BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035542
         (300 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8R116|NOTUM_MOUSE Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2
          Length = 503

 Score = 43.9 bits (102), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 12/145 (8%)

Query: 86  FREARVFLAVMKDLLTVKGMINAQNAILSGCSAGGFASILYCDNFRALFPV----GTRVK 141
           F  + +   V+++LL  KG+  A+  +L+G SAGG   +L  D    L         +V+
Sbjct: 209 FMGSLIIQEVVRELLG-KGLSGAKVLLLAGSSAGGTGVLLNVDRVAELLEELGYPSIQVR 267

Query: 142 CLADAGFFINVKDISDASHIEEFF-AQVVATHGSIKH----LPASCTKRLNPAGL--CFF 194
            LAD+G+F++ K    +  I+    A   A    I++    +P  C ++        CFF
Sbjct: 268 GLADSGWFLDNKQYRRSDCIDTINCAPTDAIRRGIRYWSGMVPERCQRQFKEGEEWNCFF 327

Query: 195 PQYVAGQVITPLFIINSAYDRWQIS 219
              V   +  P+F++   +D  Q++
Sbjct: 328 GYKVYPTLRCPVFVVQWLFDEAQLT 352


>sp|Q6P988|NOTUM_HUMAN Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2
          Length = 496

 Score = 43.5 bits (101), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 68/159 (42%), Gaps = 12/159 (7%)

Query: 72  WCNDVTTCHGTNLHFREARVFLAVMKDLLTVKGMINAQNAILSGCSAGGFASILYCD--- 128
           W    +        F  A +   V+++LL  +G+  A+  +L+G SAGG   +L  D   
Sbjct: 188 WSGASSKSEKNEYAFMGALIIQEVVRELLG-RGLSGAKVLLLAGSSAGGTGVLLNVDRVA 246

Query: 129 -NFRALFPVGTRVKCLADAGFFINVKDISDASHIEEFF-AQVVATHGSIKH----LPASC 182
                L     +V+ LAD+G+F++ K       ++    A   A    I++    +P  C
Sbjct: 247 EQLEKLGYPAIQVRGLADSGWFLDNKQYRHTDCVDTITCAPTEAIRRGIRYWNGVVPERC 306

Query: 183 TKRLNPAGL--CFFPQYVAGQVITPLFIINSAYDRWQIS 219
            ++        CFF   V   +  P+F++   +D  Q++
Sbjct: 307 RRQFQEGEEWNCFFGYKVYPTLRCPVFVVQWLFDEAQLT 345



 Score = 31.2 bits (69), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 41  VCLDCSPPTYHFDKGFGAGINNWLVFVEGGGWCNDVTTC 79
            C D SP  Y+  +  G+    WL+F+EGG +C +   C
Sbjct: 100 TCNDGSPAGYYLKESRGS--RRWLLFLEGGWYCFNRENC 136


>sp|A3QJT1|YIDC_SHELP Membrane protein insertase YidC OS=Shewanella loihica (strain ATCC
           BAA-1088 / PV-4) GN=yidC PE=3 SV=1
          Length = 542

 Score = 33.5 bits (75), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 107 NAQNAILSGCSAGGFASILYCDNFR-ALFPVGTRVKCLADAGFFINVKDISDASHIEEFF 165
           N QN I S  SAGG A+I     FR A++ V    +    A F++  KD    S I E  
Sbjct: 269 NDQNTIFSSVSAGGLANI----GFRGAVYDVAPGTQQTISAQFYVGPKDQEALSAISESL 324

Query: 166 AQVV 169
             VV
Sbjct: 325 NLVV 328


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.138    0.445 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,777,315
Number of Sequences: 539616
Number of extensions: 4722007
Number of successful extensions: 10165
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 10161
Number of HSP's gapped (non-prelim): 5
length of query: 300
length of database: 191,569,459
effective HSP length: 117
effective length of query: 183
effective length of database: 128,434,387
effective search space: 23503492821
effective search space used: 23503492821
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)