BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035544
(727 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T2K|D Chain D, Structure Of The Dna Binding Domains Of Irf3, Atf-2 And
Jun Bound To Dna
Length = 61
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 223 KRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281
KR+ L RNR +A SRQ++K +V+ LE K ++ S L S+++ E A LKQ L
Sbjct: 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59
>pdb|1DH3|A Chain A, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
Basis For Creb Faimly Selective Dimerization And Dna
Binding
pdb|1DH3|C Chain C, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
Basis For Creb Faimly Selective Dimerization And Dna
Binding
Length = 55
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 27/31 (87%)
Query: 223 KRKARLMRNRESAQLSRQRKKHYVEELEDKV 253
KR+ RLM+NRE+A+ SR++KK YV+ LE++V
Sbjct: 1 KREVRLMKNREAARESRRKKKEYVKSLENRV 31
>pdb|1T2K|C Chain C, Structure Of The Dna Binding Domains Of Irf3, Atf-2 And
Jun Bound To Dna
Length = 62
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 222 MKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281
MK + + MRNR +A SR+RK + LE+KV+ + + ++L S + + A LKQ++
Sbjct: 1 MKAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 60
>pdb|1JNM|A Chain A, Crystal Structure Of The JunCRE COMPLEX
pdb|1JNM|B Chain B, Crystal Structure Of The JunCRE COMPLEX
pdb|2H7H|A Chain A, Crystal Structure Of The Jun Bzip Homodimer Complexed With
Ap-1 Dna
pdb|2H7H|B Chain B, Crystal Structure Of The Jun Bzip Homodimer Complexed With
Ap-1 Dna
pdb|1FOS|F Chain F, Two Human C-Fos:c-Jun:dna Complexes
pdb|1FOS|H Chain H, Two Human C-Fos:c-Jun:dna Complexes
Length = 62
Score = 36.2 bits (82), Expect = 0.062, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 223 KRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281
K + + MRNR +A SR+RK + LE+KV+ + + ++L S + + A LKQ++
Sbjct: 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 15/132 (11%)
Query: 169 QKIKMEEVSKKGIFKRKKDIEETNNESRNNKYRKSSSLSVNE-ADNDHNLGEEEMKRK-- 225
QK+++E+V+ G K+ +D + E +NNK K L +D NL EEE K K
Sbjct: 972 QKLQLEKVTADGKIKKMED-DILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030
Query: 226 ARLMRNRESA-----------QLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAEN 274
+L ES + SRQ + +LE + ++H IA+L ++I+ A+
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQL 1090
Query: 275 ASLKQQLSGSNA 286
A +++L + A
Sbjct: 1091 AKKEEELQAALA 1102
>pdb|1A02|J Chain J, Structure Of The Dna Binding Domains Of Nfat, Fos And Jun
Bound To Dna
Length = 56
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 222 MKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASL 277
MK + + MRNR +A SR+RK + LE+KV+ + + ++L S + + A L
Sbjct: 1 MKAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 56
>pdb|1R5I|D Chain D, Crystal Structure Of The Mam-Mhc Complex
pdb|1R5I|H Chain H, Crystal Structure Of The Mam-Mhc Complex
Length = 216
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 183 KRKKDIEETNNESRNNKYRKSSSLSVNE-------ADNDHNLGEEEMKRKARLMRNRESA 235
K +DI +N+ + K L VN+ ND+N G E K +M + S
Sbjct: 30 KELEDIYNLSNKEETKEVLKLFKLKVNQFYRHAFGIVNDYN-GLLEYKEIFNMMFLKLSV 88
Query: 236 QLSRQRKK-HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQ 279
QRK+ + VE+++ + + +A ++ +S+F+++N + ++
Sbjct: 89 VFDTQRKEANNVEQIKRNIAILDEIMAKADNDLSYFISQNKNFQE 133
>pdb|3KPH|A Chain A, Crystal Structure Of Mycoplasma Arthritidis-Derived
Mitogen
pdb|3KPH|B Chain B, Crystal Structure Of Mycoplasma Arthritidis-Derived
Mitogen
Length = 217
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 183 KRKKDIEETNNESRNNKYRKSSSLSVNE-------ADNDHNLGEEEMKRKARLMRNRESA 235
K +DI +N+ + K L VN+ ND+N G E K +M + S
Sbjct: 32 KELEDIYNLSNKEETKEVLKLFKLKVNQFYRHAFGIVNDYN-GLLEYKEIFNMMFLKLSV 90
Query: 236 QLSRQRKK-HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQ 279
QRK+ + VE+++ + + +A ++ +S+F+++N + ++
Sbjct: 91 VFDTQRKEANNVEQIKRNIAILDEIMAKADNDLSYFISQNKNFQE 135
>pdb|2ICW|G Chain G, Crystal Structure Of A Complete Ternary Complex Between
Tcr, Superantigen, And Peptide-Mhc Class Ii Molecule
pdb|2ICW|H Chain H, Crystal Structure Of A Complete Ternary Complex Between
Tcr, Superantigen, And Peptide-Mhc Class Ii Molecule
Length = 213
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 183 KRKKDIEETNNESRNNKYRKSSSLSVNE-------ADNDHNLGEEEMKRKARLMRNRESA 235
K +DI +N+ + K L VN+ ND+N G E K +M + S
Sbjct: 27 KELEDIYNLSNKEETKEVLKLFKLKVNQFYRHAFGIVNDYN-GLLEYKEIFNMMFLKLSV 85
Query: 236 QLSRQRKK-HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQ 279
QRK+ + VE+++ + + +A ++ +S+F+++N + ++
Sbjct: 86 VFDTQRKEANNVEQIKRNIAILDEIMAKADNDLSYFISQNKNFQE 130
>pdb|2OJE|D Chain D, Mycoplasma Arthritidis-Derived Mitogen Complexed With
Class Ii Mhc Molecule Hla-Dr1HA COMPLEX IN THE PRESENCE
OF EDTA
pdb|2OJE|H Chain H, Mycoplasma Arthritidis-Derived Mitogen Complexed With
Class Ii Mhc Molecule Hla-Dr1HA COMPLEX IN THE PRESENCE
OF EDTA
Length = 214
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 183 KRKKDIEETNNESRNNKYRKSSSLSVNE-------ADNDHNLGEEEMKRKARLMRNRESA 235
K +DI +N+ + K L VN+ ND+N G E K +M + S
Sbjct: 28 KELEDIYNLSNKEETKEVLKLFKLKVNQFYRHAFGIVNDYN-GLLEYKEIFNMMFLKLSV 86
Query: 236 QLSRQRKK-HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQ 279
QRK+ + VE+++ + + +A ++ +S+F+++N + ++
Sbjct: 87 VFDTQRKEANNVEQIKRNIAILDEIMAKADNDLSYFISQNKNFQE 131
>pdb|4G6Z|A Chain A, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From
Burkholderia Thailandensis Bound To L-Glutamate
Length = 490
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 545 SHFYRNPAERQRAISSGSTDALKDHMKSSAANGKLQQWFQEGLSGPL 591
+ FYR PA A++ TDA++ + AA K +W +E ++ L
Sbjct: 392 AMFYRAPAPGADALAQHVTDAVRPALVEFAAALKTVEWTKEAIAAAL 438
>pdb|1S9K|E Chain E, Crystal Structure Of Human Nfat1 And Fos-Jun On The Il-2
Arre1 Site
Length = 52
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 229 MRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASL 277
MRNR +A R+RK + LE+KV+ + + ++L S + + A L
Sbjct: 4 MRNRIAASKCRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 52
>pdb|1A02|F Chain F, Structure Of The Dna Binding Domains Of Nfat, Fos And Jun
Bound To Dna
Length = 56
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 222 MKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASL 277
MKR+ R RN+ +A SR R++ + L+ + + + L ++I+ + E L
Sbjct: 1 MKRRIRRERNKMAAAKSRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56
>pdb|1YSA|C Chain C, The Gcn4 Basic Region Leucine Zipper Binds Dna As A Dimer
Of Uninterrupted Alpha Helices: Crystal Structure Of The
Protein-Dna Complex
pdb|1YSA|D Chain D, The Gcn4 Basic Region Leucine Zipper Binds Dna As A Dimer
Of Uninterrupted Alpha Helices: Crystal Structure Of The
Protein-Dna Complex
Length = 58
Score = 29.3 bits (64), Expect = 9.1, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 230 RNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKIS 268
RN E+A+ SR RK +++LEDKV + S L ++++
Sbjct: 11 RNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVA 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,254,818
Number of Sequences: 62578
Number of extensions: 662289
Number of successful extensions: 1017
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1001
Number of HSP's gapped (non-prelim): 21
length of query: 727
length of database: 14,973,337
effective HSP length: 106
effective length of query: 621
effective length of database: 8,340,069
effective search space: 5179182849
effective search space used: 5179182849
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)