Query 035544
Match_columns 727
No_of_seqs 210 out of 1107
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 03:53:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035544.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035544hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.4 5E-13 1.1E-17 110.2 9.3 63 220-282 2-64 (65)
2 PF00170 bZIP_1: bZIP transcri 99.3 4.4E-12 9.6E-17 104.4 9.3 63 219-281 1-63 (64)
3 KOG3584 cAMP response element 99.2 4.8E-11 1E-15 124.3 7.0 57 216-272 284-340 (348)
4 KOG0709 CREB/ATF family transc 99.1 2.6E-11 5.5E-16 132.4 4.9 75 213-287 241-315 (472)
5 KOG4343 bZIP transcription fac 99.1 2.5E-10 5.5E-15 126.1 12.0 65 215-286 273-337 (655)
6 PF07716 bZIP_2: Basic region 99.1 7.4E-10 1.6E-14 89.1 8.9 52 221-273 3-54 (54)
7 KOG4005 Transcription factor X 98.7 2.8E-08 6.2E-13 101.9 9.0 65 218-282 64-135 (292)
8 KOG0837 Transcriptional activa 98.5 3.3E-07 7.2E-12 95.1 9.1 67 218-284 201-267 (279)
9 KOG4571 Activating transcripti 98.2 1.1E-05 2.5E-10 84.9 11.7 64 220-283 224-287 (294)
10 PF03131 bZIP_Maf: bZIP Maf tr 98.1 3.6E-08 7.9E-13 87.1 -8.2 66 216-281 23-88 (92)
11 KOG3119 Basic region leucine z 98.0 2.2E-05 4.8E-10 81.6 8.5 67 218-284 189-255 (269)
12 KOG4196 bZIP transcription fac 97.3 0.0012 2.6E-08 63.3 9.4 72 216-287 46-117 (135)
13 KOG3863 bZIP transcription fac 97.2 0.00042 9.1E-09 79.2 5.1 61 223-283 490-550 (604)
14 KOG1414 Transcriptional activa 96.6 0.00018 3.9E-09 78.3 -3.3 75 218-292 149-227 (395)
15 KOG1414 Transcriptional activa 96.0 0.0011 2.4E-08 72.3 -1.3 71 217-287 279-350 (395)
16 PRK00295 hypothetical protein; 93.2 0.53 1.1E-05 40.5 7.9 41 244-284 5-52 (68)
17 PRK00736 hypothetical protein; 93.0 0.57 1.2E-05 40.3 7.9 41 244-284 5-52 (68)
18 PRK13729 conjugal transfer pil 92.9 0.82 1.8E-05 52.1 11.2 43 246-288 85-127 (475)
19 PRK02793 phi X174 lysis protei 92.4 0.7 1.5E-05 40.2 7.8 42 244-285 8-56 (72)
20 PRK02119 hypothetical protein; 92.3 0.75 1.6E-05 40.2 7.7 43 243-285 8-57 (73)
21 PRK04406 hypothetical protein; 91.7 0.91 2E-05 39.9 7.7 42 244-285 11-59 (75)
22 PRK00846 hypothetical protein; 90.6 1.5 3.1E-05 39.2 7.9 43 243-285 12-61 (77)
23 PRK10884 SH3 domain-containing 90.0 2.3 5.1E-05 43.6 10.0 43 241-283 122-164 (206)
24 PF08172 CASP_C: CASP C termin 89.6 1 2.2E-05 47.4 7.2 50 239-288 88-137 (248)
25 KOG4797 Transcriptional regula 89.5 1.4 3.1E-05 41.9 7.4 32 248-279 64-95 (123)
26 TIGR02449 conserved hypothetic 88.7 1.5 3.3E-05 38.0 6.5 40 244-283 7-46 (65)
27 PF06156 DUF972: Protein of un 88.0 1.2 2.5E-05 41.7 5.7 41 246-286 10-57 (107)
28 KOG4005 Transcription factor X 87.7 2.4 5.3E-05 45.0 8.4 30 256-285 123-152 (292)
29 PRK13922 rod shape-determining 87.6 3.2 7E-05 43.0 9.3 46 240-285 65-113 (276)
30 PF12808 Mto2_bdg: Micro-tubul 87.2 1.5 3.2E-05 36.7 5.2 43 241-283 1-47 (52)
31 KOG3335 Predicted coiled-coil 85.9 1.8 3.8E-05 44.1 6.1 46 221-272 89-134 (181)
32 PF15058 Speriolin_N: Sperioli 85.9 4.4 9.5E-05 41.8 8.9 39 247-286 8-46 (200)
33 PF06005 DUF904: Protein of un 85.5 2.8 6.1E-05 36.8 6.4 35 246-280 20-54 (72)
34 KOG3119 Basic region leucine z 85.2 16 0.00035 38.7 13.0 61 216-276 190-254 (269)
35 PF04102 SlyX: SlyX; InterPro 84.6 4 8.8E-05 35.0 6.9 42 243-284 3-51 (69)
36 PF06156 DUF972: Protein of un 84.0 3.3 7.2E-05 38.7 6.6 30 243-272 28-57 (107)
37 PF01166 TSC22: TSC-22/dip/bun 83.9 1.5 3.3E-05 37.5 4.0 32 251-282 14-45 (59)
38 PRK13169 DNA replication intia 83.8 2.5 5.4E-05 39.9 5.7 39 246-284 10-55 (110)
39 PRK04325 hypothetical protein; 83.8 3.8 8.3E-05 35.9 6.5 38 244-281 9-46 (74)
40 TIGR00219 mreC rod shape-deter 83.2 2.5 5.5E-05 44.8 6.2 39 247-285 69-111 (283)
41 KOG4343 bZIP transcription fac 83.1 2.7 5.8E-05 48.8 6.7 64 215-278 277-343 (655)
42 PF08232 Striatin: Striatin fa 82.8 9.7 0.00021 36.6 9.3 62 226-287 14-75 (134)
43 PF02183 HALZ: Homeobox associ 82.7 3.1 6.7E-05 33.6 5.0 37 248-284 2-38 (45)
44 PRK13169 DNA replication intia 82.5 4.1 9E-05 38.5 6.6 31 240-270 25-55 (110)
45 TIGR02894 DNA_bind_RsfA transc 81.7 5.8 0.00013 39.9 7.6 48 237-284 104-151 (161)
46 PF11932 DUF3450: Protein of u 80.3 15 0.00032 37.9 10.4 52 235-286 47-98 (251)
47 PF04102 SlyX: SlyX; InterPro 80.3 5.4 0.00012 34.3 6.0 38 244-281 18-55 (69)
48 KOG1029 Endocytic adaptor prot 79.6 7.2 0.00016 47.2 8.6 23 604-628 868-890 (1118)
49 KOG1924 RhoA GTPase effector D 79.4 10 0.00023 46.1 9.8 58 226-283 460-520 (1102)
50 PF13851 GAS: Growth-arrest sp 79.2 18 0.00039 36.9 10.4 62 220-281 69-130 (201)
51 PF10186 Atg14: UV radiation r 78.7 17 0.00037 37.0 10.1 24 365-388 199-222 (302)
52 PF08614 ATG16: Autophagy prot 78.5 22 0.00048 35.6 10.6 62 222-283 115-183 (194)
53 COG3074 Uncharacterized protei 77.9 6.5 0.00014 35.2 5.9 40 243-282 24-63 (79)
54 PF10473 CENP-F_leu_zip: Leuci 77.8 20 0.00043 35.3 9.7 61 223-283 31-91 (140)
55 TIGR02894 DNA_bind_RsfA transc 77.1 7.7 0.00017 39.0 6.9 38 246-283 99-136 (161)
56 PRK15422 septal ring assembly 75.9 8.1 0.00018 35.0 6.0 37 246-282 27-63 (79)
57 COG2433 Uncharacterized conser 75.7 6.2 0.00013 46.6 6.6 41 244-284 422-462 (652)
58 PRK10884 SH3 domain-containing 75.1 23 0.0005 36.5 9.9 42 242-283 130-171 (206)
59 PF06005 DUF904: Protein of un 73.8 13 0.00029 32.6 6.7 38 244-281 25-62 (72)
60 PF09744 Jnk-SapK_ap_N: JNK_SA 72.4 33 0.00072 34.2 9.9 30 254-283 85-114 (158)
61 PF09726 Macoilin: Transmembra 71.9 17 0.00038 43.5 9.2 34 247-280 548-581 (697)
62 PRK14127 cell division protein 71.8 12 0.00027 35.3 6.5 42 244-285 30-71 (109)
63 PRK11637 AmiB activator; Provi 71.4 30 0.00065 38.4 10.4 12 480-491 355-366 (428)
64 PRK00888 ftsB cell division pr 71.3 14 0.0003 34.3 6.6 35 239-273 29-63 (105)
65 PRK10803 tol-pal system protei 71.0 26 0.00056 36.9 9.3 42 242-283 59-100 (263)
66 PRK11637 AmiB activator; Provi 70.9 30 0.00065 38.4 10.2 13 479-491 342-354 (428)
67 PF08826 DMPK_coil: DMPK coile 70.6 38 0.00082 29.3 8.5 38 242-279 23-60 (61)
68 PF04977 DivIC: Septum formati 70.5 10 0.00022 31.7 5.2 33 240-272 20-52 (80)
69 PF00170 bZIP_1: bZIP transcri 69.6 60 0.0013 27.0 9.5 33 243-275 32-64 (64)
70 PF05377 FlaC_arch: Flagella a 69.5 13 0.00028 31.7 5.4 38 246-283 2-39 (55)
71 KOG1055 GABA-B ion channel rec 69.5 5.4 0.00012 48.2 4.4 64 222-285 725-793 (865)
72 PHA03162 hypothetical protein; 69.4 7.3 0.00016 38.2 4.5 27 261-287 16-42 (135)
73 PF11559 ADIP: Afadin- and alp 69.3 43 0.00094 32.0 9.7 45 226-270 48-92 (151)
74 TIGR02449 conserved hypothetic 69.3 9.6 0.00021 33.2 4.8 18 264-281 13-30 (65)
75 PF15556 Zwint: ZW10 interacto 69.2 42 0.0009 35.5 10.1 54 228-281 118-171 (252)
76 PF09726 Macoilin: Transmembra 68.5 21 0.00046 42.8 9.0 34 249-282 543-576 (697)
77 PRK00888 ftsB cell division pr 68.3 12 0.00026 34.7 5.6 34 246-279 29-62 (105)
78 PF10226 DUF2216: Uncharacteri 68.3 35 0.00077 35.4 9.3 59 219-280 19-77 (195)
79 COG4467 Regulator of replicati 67.9 12 0.00025 35.9 5.4 37 245-281 9-45 (114)
80 PF12999 PRKCSH-like: Glucosid 67.7 27 0.00059 35.6 8.3 40 234-273 136-175 (176)
81 PF10186 Atg14: UV radiation r 67.1 46 0.001 33.9 10.0 6 277-282 138-143 (302)
82 KOG1962 B-cell receptor-associ 66.9 14 0.0003 38.7 6.3 45 240-284 168-212 (216)
83 PF04977 DivIC: Septum formati 66.8 17 0.00037 30.4 5.8 31 254-284 20-50 (80)
84 PF04156 IncA: IncA protein; 66.6 55 0.0012 32.0 10.0 53 228-280 114-166 (191)
85 smart00338 BRLZ basic region l 66.4 67 0.0015 26.8 9.1 28 246-273 35-62 (65)
86 PF11500 Cut12: Spindle pole b 66.3 42 0.00091 33.6 9.1 55 219-273 80-134 (152)
87 PF05529 Bap31: B-cell recepto 66.1 33 0.00072 34.0 8.5 35 250-284 153-187 (192)
88 PF14915 CCDC144C: CCDC144C pr 66.0 23 0.0005 38.8 7.9 51 233-283 182-239 (305)
89 PF03980 Nnf1: Nnf1 ; InterPr 65.6 9.4 0.0002 34.7 4.3 31 242-272 78-108 (109)
90 PRK09039 hypothetical protein; 65.0 41 0.00088 36.9 9.6 19 264-282 136-154 (343)
91 PRK13729 conjugal transfer pil 64.9 19 0.00041 41.6 7.4 30 484-513 255-288 (475)
92 PF09304 Cortex-I_coil: Cortex 64.9 72 0.0016 30.5 9.9 61 222-282 15-75 (107)
93 COG4942 Membrane-bound metallo 64.6 39 0.00085 38.6 9.6 51 223-273 38-88 (420)
94 PF13815 Dzip-like_N: Iguana/D 64.4 27 0.00058 32.7 7.1 44 238-281 74-117 (118)
95 PF10224 DUF2205: Predicted co 64.3 34 0.00075 30.9 7.4 44 242-285 21-64 (80)
96 KOG4196 bZIP transcription fac 64.3 13 0.00029 36.5 5.2 35 254-288 77-111 (135)
97 PRK04325 hypothetical protein; 64.3 48 0.001 29.2 8.2 42 244-285 16-57 (74)
98 KOG0818 GTPase-activating prot 64.1 21 0.00045 41.8 7.4 46 242-287 421-466 (669)
99 PF07558 Shugoshin_N: Shugoshi 63.8 6.6 0.00014 31.8 2.6 36 247-282 10-45 (46)
100 PF05266 DUF724: Protein of un 63.7 47 0.001 34.0 9.2 22 232-253 98-119 (190)
101 KOG0971 Microtubule-associated 61.4 44 0.00096 41.6 9.7 64 225-288 282-362 (1243)
102 PF05812 Herpes_BLRF2: Herpesv 61.2 10 0.00023 36.5 3.8 27 260-286 5-31 (118)
103 PF08647 BRE1: BRE1 E3 ubiquit 61.0 83 0.0018 28.6 9.4 60 225-284 5-71 (96)
104 PF07926 TPR_MLP1_2: TPR/MLP1/ 61.0 1E+02 0.0023 29.2 10.5 37 247-283 94-130 (132)
105 PF11559 ADIP: Afadin- and alp 60.9 93 0.002 29.7 10.2 41 227-267 63-103 (151)
106 PF01920 Prefoldin_2: Prefoldi 60.5 40 0.00087 29.6 7.2 42 242-283 60-101 (106)
107 COG1382 GimC Prefoldin, chaper 60.5 30 0.00065 33.4 6.8 45 239-283 65-109 (119)
108 PRK15422 septal ring assembly 60.3 29 0.00063 31.5 6.2 39 244-282 4-42 (79)
109 PF04728 LPP: Lipoprotein leuc 60.3 27 0.00058 29.9 5.6 32 246-277 5-36 (56)
110 COG2900 SlyX Uncharacterized p 60.2 36 0.00078 30.5 6.6 39 244-282 8-46 (72)
111 TIGR02209 ftsL_broad cell divi 60.2 75 0.0016 27.3 8.6 32 241-272 28-59 (85)
112 PF11932 DUF3450: Protein of u 60.1 61 0.0013 33.5 9.5 20 369-388 154-173 (251)
113 TIGR02209 ftsL_broad cell divi 60.1 31 0.00068 29.6 6.3 34 252-285 25-58 (85)
114 PF06216 RTBV_P46: Rice tungro 59.9 20 0.00043 38.9 6.0 44 244-287 64-107 (389)
115 PRK09413 IS2 repressor TnpA; R 59.8 27 0.00059 32.4 6.3 32 252-283 72-103 (121)
116 PF10805 DUF2730: Protein of u 59.6 40 0.00086 31.2 7.2 42 242-283 47-90 (106)
117 PF06637 PV-1: PV-1 protein (P 59.5 97 0.0021 35.4 11.3 34 249-283 348-381 (442)
118 PF02183 HALZ: Homeobox associ 59.4 30 0.00065 28.1 5.6 36 247-282 8-43 (45)
119 PTZ00454 26S protease regulato 58.5 25 0.00054 39.2 6.8 39 249-287 27-65 (398)
120 COG4026 Uncharacterized protei 58.2 70 0.0015 34.4 9.5 59 228-286 147-205 (290)
121 PF12709 Kinetocho_Slk19: Cent 58.1 39 0.00084 31.2 6.7 28 248-275 53-80 (87)
122 PF13747 DUF4164: Domain of un 57.9 94 0.002 28.3 9.1 58 218-275 6-63 (89)
123 COG1792 MreC Cell shape-determ 57.9 24 0.00052 37.8 6.3 44 242-285 64-110 (284)
124 PF01166 TSC22: TSC-22/dip/bun 57.9 17 0.00037 31.4 4.1 21 245-265 22-42 (59)
125 PRK10803 tol-pal system protei 57.7 22 0.00048 37.4 5.9 39 245-283 55-93 (263)
126 PF08317 Spc7: Spc7 kinetochor 57.4 81 0.0017 34.1 10.2 41 242-282 228-268 (325)
127 PF05300 DUF737: Protein of un 56.8 36 0.00078 35.0 7.0 51 228-278 118-168 (187)
128 COG4467 Regulator of replicati 56.7 29 0.00063 33.3 5.9 41 243-283 14-54 (114)
129 COG3074 Uncharacterized protei 56.7 36 0.00078 30.6 6.1 11 246-256 6-16 (79)
130 PF04728 LPP: Lipoprotein leuc 56.3 49 0.0011 28.4 6.6 35 246-280 12-46 (56)
131 PF11365 DUF3166: Protein of u 56.3 32 0.00069 32.2 6.0 42 246-287 3-44 (96)
132 KOG3910 Helix loop helix trans 56.1 56 0.0012 38.4 9.0 18 268-285 569-586 (632)
133 PHA03155 hypothetical protein; 55.7 15 0.00033 35.3 3.9 25 261-285 11-35 (115)
134 PRK12704 phosphodiesterase; Pr 54.7 86 0.0019 36.5 10.4 13 673-685 470-482 (520)
135 PF10205 KLRAQ: Predicted coil 54.6 1.1E+02 0.0023 29.1 9.1 52 228-279 23-75 (102)
136 PF05700 BCAS2: Breast carcino 54.5 1.1E+02 0.0024 31.5 10.2 39 246-284 177-215 (221)
137 cd04776 HTH_GnyR Helix-Turn-He 54.4 52 0.0011 30.7 7.1 39 243-281 79-117 (118)
138 PRK11546 zraP zinc resistance 53.5 61 0.0013 32.2 7.7 31 220-250 46-76 (143)
139 TIGR03752 conj_TIGR03752 integ 53.5 26 0.00056 40.5 6.0 38 247-284 97-135 (472)
140 PF07926 TPR_MLP1_2: TPR/MLP1/ 53.4 69 0.0015 30.4 7.9 43 227-269 88-130 (132)
141 PF03670 UPF0184: Uncharacteri 53.3 39 0.00085 31.0 5.9 41 245-285 34-74 (83)
142 smart00340 HALZ homeobox assoc 53.3 21 0.00045 29.3 3.7 32 257-288 4-35 (44)
143 KOG1853 LIS1-interacting prote 53.2 80 0.0017 34.5 9.1 43 225-267 26-68 (333)
144 PF07795 DUF1635: Protein of u 52.9 53 0.0011 34.6 7.6 55 227-281 16-70 (214)
145 PLN02320 seryl-tRNA synthetase 52.9 53 0.0011 38.3 8.3 55 227-281 113-167 (502)
146 PF01486 K-box: K-box region; 52.8 31 0.00067 31.1 5.3 28 255-282 72-99 (100)
147 PF05529 Bap31: B-cell recepto 52.6 65 0.0014 32.0 8.0 31 243-273 160-190 (192)
148 PF08537 NBP1: Fungal Nap bind 52.5 89 0.0019 34.8 9.5 27 220-246 119-145 (323)
149 COG2919 Septum formation initi 52.4 1.5E+02 0.0033 27.9 9.9 59 222-280 20-86 (117)
150 PF04111 APG6: Autophagy prote 52.0 1.1E+02 0.0023 33.4 10.1 12 272-283 120-131 (314)
151 PF05812 Herpes_BLRF2: Herpesv 52.0 23 0.0005 34.2 4.5 28 242-269 1-28 (118)
152 KOG1318 Helix loop helix trans 52.0 22 0.00048 40.4 5.1 38 246-283 292-329 (411)
153 PF15070 GOLGA2L5: Putative go 51.9 75 0.0016 37.9 9.5 44 240-283 118-171 (617)
154 PF13863 DUF4200: Domain of un 51.7 1.5E+02 0.0032 27.2 9.6 32 237-268 74-105 (126)
155 TIGR03689 pup_AAA proteasome A 51.0 33 0.00071 39.8 6.4 44 246-289 3-46 (512)
156 TIGR03752 conj_TIGR03752 integ 50.9 30 0.00065 40.0 6.0 50 234-283 86-141 (472)
157 PF05103 DivIVA: DivIVA protei 50.3 9.2 0.0002 35.0 1.6 39 244-282 25-63 (131)
158 PF05266 DUF724: Protein of un 50.2 1.3E+02 0.0028 30.8 9.8 46 238-283 125-177 (190)
159 TIGR01242 26Sp45 26S proteasom 50.0 30 0.00065 37.3 5.6 41 247-287 2-42 (364)
160 PF05377 FlaC_arch: Flagella a 49.7 29 0.00063 29.6 4.2 34 245-278 8-41 (55)
161 PF11180 DUF2968: Protein of u 49.6 1.7E+02 0.0037 30.5 10.5 36 247-282 150-185 (192)
162 PF10211 Ax_dynein_light: Axon 49.4 1.5E+02 0.0032 30.2 9.9 21 243-263 126-146 (189)
163 PF12709 Kinetocho_Slk19: Cent 49.2 57 0.0012 30.1 6.3 34 242-282 40-73 (87)
164 COG4985 ABC-type phosphate tra 48.8 72 0.0016 34.5 7.8 47 237-283 199-246 (289)
165 cd00632 Prefoldin_beta Prefold 48.7 66 0.0014 29.3 6.7 43 241-283 60-102 (105)
166 PF12718 Tropomyosin_1: Tropom 48.7 51 0.0011 32.1 6.3 23 258-280 35-57 (143)
167 PF05615 THOC7: Tho complex su 48.5 2.1E+02 0.0045 27.1 10.3 66 219-284 42-107 (139)
168 PF08614 ATG16: Autophagy prot 48.1 1.8E+02 0.0038 29.2 10.3 49 235-283 121-169 (194)
169 PF07334 IFP_35_N: Interferon- 48.0 40 0.00087 30.4 5.0 36 253-288 2-37 (76)
170 PF04880 NUDE_C: NUDE protein, 47.8 25 0.00054 35.5 4.2 19 263-281 29-47 (166)
171 KOG0288 WD40 repeat protein Ti 47.6 1.1E+02 0.0024 35.3 9.5 29 242-270 46-74 (459)
172 PF12711 Kinesin-relat_1: Kine 47.5 46 0.00099 30.6 5.4 37 249-285 22-64 (86)
173 PF03962 Mnd1: Mnd1 family; I 47.3 1.6E+02 0.0034 30.0 9.8 22 262-283 107-128 (188)
174 PF11382 DUF3186: Protein of u 47.2 38 0.00082 36.6 5.8 42 243-284 31-72 (308)
175 PF14916 CCDC92: Coiled-coil d 47.1 36 0.00078 29.5 4.5 42 244-285 3-48 (60)
176 PF02403 Seryl_tRNA_N: Seryl-t 47.0 44 0.00096 30.1 5.3 30 254-283 70-99 (108)
177 PRK00106 hypothetical protein; 47.0 1.3E+02 0.0029 35.4 10.4 15 491-505 348-362 (535)
178 PHA03155 hypothetical protein; 46.9 23 0.00051 34.1 3.7 25 245-269 9-33 (115)
179 PHA03162 hypothetical protein; 46.8 14 0.0003 36.4 2.2 28 241-268 10-37 (135)
180 KOG4797 Transcriptional regula 46.6 99 0.0021 30.0 7.7 33 234-266 64-96 (123)
181 PF14775 NYD-SP28_assoc: Sperm 46.4 80 0.0017 27.0 6.4 25 259-283 34-58 (60)
182 PF10267 Tmemb_cc2: Predicted 46.2 5.1E+02 0.011 29.7 15.1 15 269-283 273-287 (395)
183 PTZ00454 26S protease regulato 46.0 64 0.0014 36.1 7.4 37 244-280 29-65 (398)
184 PLN02678 seryl-tRNA synthetase 45.8 89 0.0019 35.8 8.6 35 590-624 322-365 (448)
185 KOG0709 CREB/ATF family transc 45.7 52 0.0011 38.1 6.7 28 247-274 289-316 (472)
186 TIGR03319 YmdA_YtgF conserved 45.5 1.4E+02 0.0031 34.6 10.3 14 673-686 464-477 (514)
187 PRK03992 proteasome-activating 45.4 55 0.0012 36.0 6.8 40 247-286 11-50 (389)
188 PF12808 Mto2_bdg: Micro-tubul 45.4 56 0.0012 27.6 5.2 32 241-272 19-50 (52)
189 PF07558 Shugoshin_N: Shugoshi 45.2 23 0.00051 28.7 2.9 43 225-268 3-45 (46)
190 TIGR00414 serS seryl-tRNA synt 45.2 1E+02 0.0022 34.8 8.8 55 227-281 50-106 (418)
191 PF12718 Tropomyosin_1: Tropom 44.6 1.5E+02 0.0031 29.0 8.8 36 246-281 30-65 (143)
192 PF04871 Uso1_p115_C: Uso1 / p 44.5 2.2E+02 0.0048 27.7 9.9 54 235-288 53-114 (136)
193 TIGR02338 gimC_beta prefoldin, 44.1 84 0.0018 28.9 6.7 42 242-283 65-106 (110)
194 PF09789 DUF2353: Uncharacteri 43.9 1.3E+02 0.0029 33.4 9.2 42 247-288 75-116 (319)
195 PF14282 FlxA: FlxA-like prote 43.9 68 0.0015 29.7 6.1 22 261-282 54-75 (106)
196 COG4372 Uncharacterized protei 43.8 1.5E+02 0.0032 34.2 9.7 51 228-278 128-178 (499)
197 PF04880 NUDE_C: NUDE protein, 43.7 28 0.00061 35.2 3.9 30 253-283 26-55 (166)
198 PF06785 UPF0242: Uncharacteri 43.6 76 0.0017 35.7 7.4 22 259-280 202-223 (401)
199 PRK13923 putative spore coat p 43.3 82 0.0018 32.2 7.1 44 244-287 111-154 (170)
200 KOG0977 Nuclear envelope prote 43.3 1.1E+02 0.0024 36.2 9.0 15 250-264 168-182 (546)
201 PF04999 FtsL: Cell division p 43.2 1.7E+02 0.0038 25.9 8.4 25 259-283 43-67 (97)
202 PF10481 CENP-F_N: Cenp-F N-te 43.1 1.3E+02 0.0027 33.3 8.7 59 227-285 71-129 (307)
203 KOG0995 Centromere-associated 43.0 1.6E+02 0.0035 35.1 10.2 42 243-284 279-327 (581)
204 PF12777 MT: Microtubule-bindi 42.6 96 0.0021 33.8 8.0 65 220-284 218-282 (344)
205 PF04568 IATP: Mitochondrial A 42.2 1.3E+02 0.0027 28.4 7.6 8 231-238 56-63 (100)
206 COG4026 Uncharacterized protei 42.1 69 0.0015 34.4 6.5 28 256-283 161-188 (290)
207 PF07106 TBPIP: Tat binding pr 42.1 46 0.001 32.4 5.0 41 246-286 95-137 (169)
208 KOG1318 Helix loop helix trans 42.0 1.9E+02 0.0041 33.3 10.3 26 263-288 302-327 (411)
209 PF12329 TMF_DNA_bd: TATA elem 41.9 2.4E+02 0.0053 24.8 10.0 44 240-283 29-72 (74)
210 KOG0483 Transcription factor H 41.9 32 0.0007 35.5 4.1 41 247-287 108-148 (198)
211 PF09755 DUF2046: Uncharacteri 41.9 2.2E+02 0.0047 31.7 10.4 25 260-284 180-204 (310)
212 PF04999 FtsL: Cell division p 41.9 66 0.0014 28.6 5.6 27 246-272 44-70 (97)
213 PF07716 bZIP_2: Basic region 41.5 1.2E+02 0.0026 24.7 6.6 22 261-282 28-49 (54)
214 PF07888 CALCOCO1: Calcium bin 41.4 1.9E+02 0.0041 34.4 10.4 16 266-281 221-236 (546)
215 KOG4571 Activating transcripti 41.3 1.2E+02 0.0026 33.5 8.3 30 243-272 254-283 (294)
216 PF06698 DUF1192: Protein of u 41.3 65 0.0014 27.8 5.1 25 246-270 23-47 (59)
217 cd07596 BAR_SNX The Bin/Amphip 40.8 2.3E+02 0.005 27.4 9.5 21 229-249 116-136 (218)
218 PF10224 DUF2205: Predicted co 40.7 1.2E+02 0.0026 27.5 7.0 23 248-270 41-63 (80)
219 COG1382 GimC Prefoldin, chaper 40.7 70 0.0015 31.0 5.8 43 237-279 70-112 (119)
220 smart00787 Spc7 Spc7 kinetocho 40.7 2.3E+02 0.0049 31.2 10.4 40 243-282 224-263 (312)
221 cd00890 Prefoldin Prefoldin is 40.3 83 0.0018 28.6 6.1 35 248-282 91-125 (129)
222 KOG2483 Upstream transcription 39.9 60 0.0013 34.4 5.7 41 240-287 101-141 (232)
223 PF03276 Gag_spuma: Spumavirus 39.9 2.5E+02 0.0055 33.5 11.0 37 247-283 136-172 (582)
224 PF04156 IncA: IncA protein; 39.7 2.8E+02 0.006 27.2 10.0 48 234-281 134-181 (191)
225 PF04849 HAP1_N: HAP1 N-termin 39.6 76 0.0016 35.0 6.6 43 241-283 224-266 (306)
226 PF06810 Phage_GP20: Phage min 39.6 1.3E+02 0.0028 29.8 7.7 34 242-275 32-68 (155)
227 PF10226 DUF2216: Uncharacteri 39.5 1.5E+02 0.0032 31.1 8.2 39 246-284 103-141 (195)
228 COG3883 Uncharacterized protei 39.3 2.3E+02 0.005 30.8 10.0 63 221-283 36-98 (265)
229 PF07047 OPA3: Optic atrophy 3 39.3 52 0.0011 31.6 4.8 20 244-263 112-131 (134)
230 KOG1924 RhoA GTPase effector D 39.2 2.8E+02 0.006 34.8 11.5 10 411-420 616-625 (1102)
231 PF15556 Zwint: ZW10 interacto 39.1 2.3E+02 0.0049 30.3 9.5 58 228-285 111-168 (252)
232 PRK05431 seryl-tRNA synthetase 39.0 1.5E+02 0.0033 33.5 9.0 29 255-283 70-98 (425)
233 PF10211 Ax_dynein_light: Axon 39.0 2.7E+02 0.0059 28.3 10.0 20 263-282 168-187 (189)
234 PHA02562 46 endonuclease subun 38.9 2E+02 0.0043 32.5 10.0 10 356-365 469-478 (562)
235 PF04201 TPD52: Tumour protein 38.7 84 0.0018 31.9 6.3 31 252-282 37-67 (162)
236 PF07047 OPA3: Optic atrophy 3 38.5 68 0.0015 30.8 5.5 25 247-271 108-132 (134)
237 PF12325 TMF_TATA_bd: TATA ele 38.4 94 0.002 29.9 6.3 62 219-280 19-83 (120)
238 PF05278 PEARLI-4: Arabidopsis 38.2 2.7E+02 0.0058 30.5 10.3 18 249-266 212-229 (269)
239 PF04859 DUF641: Plant protein 38.1 52 0.0011 32.2 4.6 36 245-280 95-130 (131)
240 PF04599 Pox_G5: Poxvirus G5 p 37.9 93 0.002 35.8 7.2 26 232-257 87-112 (425)
241 PF10779 XhlA: Haemolysin XhlA 37.9 1.2E+02 0.0027 26.1 6.4 34 244-277 20-53 (71)
242 PF08781 DP: Transcription fac 37.8 1.6E+02 0.0034 29.4 7.8 20 237-256 15-34 (142)
243 PF08961 DUF1875: Domain of un 37.8 11 0.00023 39.9 0.0 33 245-277 130-162 (243)
244 PF03961 DUF342: Protein of un 37.8 2E+02 0.0044 32.4 9.7 33 252-284 376-408 (451)
245 PF06785 UPF0242: Uncharacteri 37.7 62 0.0013 36.4 5.6 44 240-283 123-173 (401)
246 PF10146 zf-C4H2: Zinc finger- 37.7 2.4E+02 0.0051 29.9 9.6 125 234-360 71-229 (230)
247 KOG0250 DNA repair protein RAD 37.7 1.4E+02 0.0031 37.8 9.2 19 235-253 370-388 (1074)
248 PRK02119 hypothetical protein; 37.7 1.3E+02 0.0028 26.6 6.5 32 246-277 25-56 (73)
249 TIGR02169 SMC_prok_A chromosom 37.4 2.1E+02 0.0045 34.8 10.4 17 695-711 1142-1159(1164)
250 PF10805 DUF2730: Protein of u 37.4 87 0.0019 29.0 5.8 34 250-283 48-83 (106)
251 PF06210 DUF1003: Protein of u 37.3 1.7E+02 0.0037 27.7 7.7 45 228-277 55-99 (108)
252 PF08286 Spc24: Spc24 subunit 37.2 11 0.00024 35.0 0.0 37 247-283 2-38 (118)
253 PF11471 Sugarporin_N: Maltopo 36.9 56 0.0012 28.0 4.1 29 249-277 30-58 (60)
254 PF12999 PRKCSH-like: Glucosid 36.8 1.7E+02 0.0037 30.1 8.1 11 20-30 21-31 (176)
255 PRK14162 heat shock protein Gr 36.6 87 0.0019 32.3 6.2 17 248-264 57-73 (194)
256 KOG0946 ER-Golgi vesicle-tethe 36.5 2.3E+02 0.005 35.4 10.3 60 222-281 649-708 (970)
257 PF04420 CHD5: CHD5-like prote 36.3 98 0.0021 30.6 6.3 21 263-283 71-91 (161)
258 PF01486 K-box: K-box region; 36.3 1.6E+02 0.0035 26.6 7.2 46 223-268 49-99 (100)
259 PF11853 DUF3373: Protein of u 36.2 33 0.0007 39.9 3.4 28 244-271 31-58 (489)
260 KOG2391 Vacuolar sorting prote 36.2 1.1E+02 0.0023 34.6 7.1 54 227-283 224-278 (365)
261 PF08172 CASP_C: CASP C termin 36.1 1.3E+02 0.0029 31.9 7.6 55 221-276 85-139 (248)
262 PRK14872 rod shape-determining 36.1 79 0.0017 35.2 6.1 38 244-281 57-97 (337)
263 PF07767 Nop53: Nop53 (60S rib 36.0 2.3E+02 0.0049 31.4 9.7 30 225-254 278-307 (387)
264 PRK04406 hypothetical protein; 35.9 1.4E+02 0.003 26.5 6.5 26 247-272 28-53 (75)
265 TIGR02169 SMC_prok_A chromosom 35.9 2.3E+02 0.0049 34.5 10.4 11 382-392 612-622 (1164)
266 PF00769 ERM: Ezrin/radixin/mo 35.9 2.8E+02 0.0061 29.2 9.9 18 263-280 80-97 (246)
267 COG3879 Uncharacterized protei 35.9 1.8E+02 0.0039 31.4 8.5 31 227-257 54-84 (247)
268 PF02996 Prefoldin: Prefoldin 35.8 81 0.0017 28.5 5.3 33 247-279 87-119 (120)
269 PRK13922 rod shape-determining 35.8 1.7E+02 0.0036 30.6 8.2 43 244-287 63-108 (276)
270 COG2919 Septum formation initi 35.8 77 0.0017 29.8 5.3 30 256-285 55-84 (117)
271 KOG1962 B-cell receptor-associ 35.4 1.9E+02 0.004 30.7 8.4 35 249-283 156-190 (216)
272 COG1579 Zn-ribbon protein, pos 35.1 3.1E+02 0.0066 29.5 10.0 44 225-268 33-76 (239)
273 PF15035 Rootletin: Ciliary ro 35.1 95 0.0021 31.6 6.1 20 258-277 95-114 (182)
274 PRK02793 phi X174 lysis protei 35.1 1.5E+02 0.0032 26.0 6.5 34 245-278 23-56 (72)
275 PRK09343 prefoldin subunit bet 35.0 1.2E+02 0.0026 28.7 6.4 31 251-281 85-115 (121)
276 PF05278 PEARLI-4: Arabidopsis 35.0 2.9E+02 0.0062 30.3 9.9 34 250-283 206-239 (269)
277 PF04340 DUF484: Protein of un 34.9 97 0.0021 31.5 6.2 25 246-270 42-66 (225)
278 PRK14154 heat shock protein Gr 34.9 87 0.0019 32.8 5.9 23 246-268 68-90 (208)
279 cd07666 BAR_SNX7 The Bin/Amphi 34.8 1.9E+02 0.0041 30.9 8.5 45 226-270 152-196 (243)
280 PF10498 IFT57: Intra-flagella 34.6 3E+02 0.0065 30.9 10.3 46 242-287 278-323 (359)
281 PF09304 Cortex-I_coil: Cortex 34.6 1.4E+02 0.0031 28.6 6.7 7 243-249 29-35 (107)
282 PRK11239 hypothetical protein; 34.6 58 0.0013 34.4 4.6 26 247-272 186-211 (215)
283 PRK14158 heat shock protein Gr 34.5 1E+02 0.0023 31.8 6.3 20 247-266 57-76 (194)
284 KOG0982 Centrosomal protein Nu 34.5 1.3E+02 0.0027 35.0 7.5 65 222-288 263-327 (502)
285 TIGR00293 prefoldin, archaeal 34.3 1.4E+02 0.003 27.6 6.6 22 249-270 98-119 (126)
286 PHA02562 46 endonuclease subun 34.1 2.2E+02 0.0048 32.1 9.4 30 248-277 369-398 (562)
287 PF14584 DUF4446: Protein of u 34.0 2.2E+02 0.0049 28.3 8.3 36 248-283 43-78 (151)
288 PF13851 GAS: Growth-arrest sp 33.9 1.1E+02 0.0024 31.3 6.4 21 263-283 98-118 (201)
289 KOG0995 Centromere-associated 33.9 1.5E+02 0.0032 35.5 8.0 40 244-283 301-350 (581)
290 KOG4001 Axonemal dynein light 33.6 1.8E+02 0.004 31.0 7.9 21 263-283 233-253 (259)
291 COG1579 Zn-ribbon protein, pos 33.5 2.8E+02 0.0061 29.8 9.4 50 234-283 28-77 (239)
292 PF07888 CALCOCO1: Calcium bin 33.4 2.3E+02 0.0051 33.6 9.6 35 223-257 150-184 (546)
293 PF02185 HR1: Hr1 repeat; Int 33.4 1.5E+02 0.0032 25.2 6.1 52 222-273 7-62 (70)
294 PF08946 Osmo_CC: Osmosensory 33.3 77 0.0017 26.4 4.1 31 243-273 11-41 (46)
295 PF04899 MbeD_MobD: MbeD/MobD 33.3 1.6E+02 0.0034 26.2 6.3 37 247-283 31-67 (70)
296 PF14662 CCDC155: Coiled-coil 33.2 3.4E+02 0.0073 28.5 9.6 8 255-262 78-85 (193)
297 TIGR02977 phageshock_pspA phag 33.1 1.9E+02 0.0042 29.6 8.0 27 247-273 102-128 (219)
298 PF08317 Spc7: Spc7 kinetochor 33.1 2.3E+02 0.0049 30.8 8.9 8 53-60 23-31 (325)
299 PRK09343 prefoldin subunit bet 32.8 1.4E+02 0.003 28.4 6.4 42 242-283 69-110 (121)
300 PF02841 GBP_C: Guanylate-bind 32.8 3.5E+02 0.0075 28.9 10.1 30 239-268 224-253 (297)
301 PRK14140 heat shock protein Gr 32.6 1.1E+02 0.0025 31.5 6.2 38 246-283 39-76 (191)
302 TIGR02231 conserved hypothetic 32.6 1.7E+02 0.0037 33.4 8.3 35 251-285 138-172 (525)
303 KOG0993 Rab5 GTPase effector R 32.6 1.8E+02 0.0039 33.8 8.2 60 224-283 101-173 (542)
304 PF08537 NBP1: Fungal Nap bind 32.4 1.1E+02 0.0025 34.0 6.5 38 246-283 184-221 (323)
305 PRK00295 hypothetical protein; 32.4 1.3E+02 0.0028 26.2 5.6 34 245-278 20-53 (68)
306 PRK14143 heat shock protein Gr 32.1 1.2E+02 0.0025 32.3 6.4 23 246-268 83-105 (238)
307 PF07407 Seadorna_VP6: Seadorn 32.1 66 0.0014 36.1 4.7 32 582-613 337-369 (420)
308 PF14197 Cep57_CLD_2: Centroso 31.8 97 0.0021 27.1 4.8 18 266-283 48-65 (69)
309 PRK14148 heat shock protein Gr 31.8 1.2E+02 0.0026 31.4 6.3 38 246-283 42-79 (195)
310 PF10168 Nup88: Nuclear pore c 31.8 3E+02 0.0065 33.6 10.4 44 240-283 575-618 (717)
311 KOG2391 Vacuolar sorting prote 31.8 3E+02 0.0064 31.3 9.5 45 239-283 220-264 (365)
312 PRK03947 prefoldin subunit alp 31.7 1.4E+02 0.0031 28.2 6.4 34 247-280 104-137 (140)
313 KOG4552 Vitamin-D-receptor int 31.4 2.6E+02 0.0055 30.1 8.6 30 240-269 70-99 (272)
314 PF15397 DUF4618: Domain of un 31.3 2.9E+02 0.0063 30.0 9.2 39 232-270 69-107 (258)
315 PF04201 TPD52: Tumour protein 31.3 68 0.0015 32.6 4.3 39 245-283 37-80 (162)
316 PF05769 DUF837: Protein of un 31.1 4.1E+02 0.0089 27.1 9.8 21 265-285 70-90 (181)
317 COG1730 GIM5 Predicted prefold 31.0 2.3E+02 0.0049 28.3 7.8 36 247-282 104-139 (145)
318 PF07439 DUF1515: Protein of u 30.9 3.6E+02 0.0078 26.2 8.7 65 221-287 16-84 (112)
319 PF10883 DUF2681: Protein of u 30.9 1.5E+02 0.0032 27.4 6.0 37 247-283 26-64 (87)
320 PF09755 DUF2046: Uncharacteri 30.7 3.3E+02 0.0071 30.4 9.6 27 247-273 138-164 (310)
321 TIGR02168 SMC_prok_B chromosom 30.6 3.2E+02 0.0069 33.1 10.4 13 696-708 1158-1171(1179)
322 TIGR00219 mreC rod shape-deter 30.4 86 0.0019 33.6 5.2 36 252-287 67-106 (283)
323 PF08702 Fib_alpha: Fibrinogen 30.3 2.2E+02 0.0047 28.1 7.5 43 241-284 88-130 (146)
324 PF03980 Nnf1: Nnf1 ; InterPr 30.2 96 0.0021 28.3 4.8 31 255-285 77-107 (109)
325 cd07665 BAR_SNX1 The Bin/Amphi 30.1 1.5E+02 0.0032 31.4 6.8 46 240-285 25-70 (234)
326 PF13600 DUF4140: N-terminal d 30.1 1.1E+02 0.0023 27.5 5.0 6 251-256 77-82 (104)
327 PF11598 COMP: Cartilage oligo 29.8 2.3E+02 0.0049 23.4 6.3 40 248-287 5-44 (45)
328 KOG1029 Endocytic adaptor prot 29.5 2.1E+02 0.0045 35.7 8.4 21 263-283 435-455 (1118)
329 PF04012 PspA_IM30: PspA/IM30 29.5 3.9E+02 0.0084 27.0 9.4 29 252-280 113-141 (221)
330 cd00632 Prefoldin_beta Prefold 29.4 1.5E+02 0.0033 27.0 5.9 34 244-277 70-103 (105)
331 PF01763 Herpes_UL6: Herpesvir 29.4 1.3E+02 0.0028 35.8 6.7 46 242-287 361-406 (557)
332 KOG1265 Phospholipase C [Lipid 29.4 3.7E+02 0.008 34.2 10.5 64 222-285 1027-1102(1189)
333 KOG1760 Molecular chaperone Pr 29.4 1.4E+02 0.003 29.5 5.9 35 249-283 86-120 (131)
334 KOG4643 Uncharacterized coiled 29.4 1.1E+02 0.0025 38.6 6.5 45 228-272 502-558 (1195)
335 PF13805 Pil1: Eisosome compon 29.2 3.5E+02 0.0075 29.6 9.4 16 227-242 131-146 (271)
336 TIGR02338 gimC_beta prefoldin, 29.2 1.2E+02 0.0027 27.9 5.4 32 246-277 76-107 (110)
337 TIGR02168 SMC_prok_B chromosom 29.2 3.3E+02 0.0071 33.0 10.2 8 597-604 1171-1178(1179)
338 PRK15178 Vi polysaccharide exp 29.2 2.3E+02 0.0049 32.8 8.4 63 221-283 251-332 (434)
339 COG5570 Uncharacterized small 29.1 1.1E+02 0.0025 26.2 4.6 37 244-280 5-55 (57)
340 PF05600 DUF773: Protein of un 28.9 3.3E+02 0.0072 31.8 9.8 38 246-283 455-492 (507)
341 PF15070 GOLGA2L5: Putative go 28.9 3.6E+02 0.0079 32.4 10.3 59 227-285 10-70 (617)
342 PRK14160 heat shock protein Gr 28.8 1.5E+02 0.0033 31.0 6.5 38 246-283 63-100 (211)
343 PF11068 YlqD: YlqD protein; 28.8 2.3E+02 0.0049 27.7 7.3 10 274-283 76-85 (131)
344 cd07429 Cby_like Chibby, a nuc 28.8 79 0.0017 30.2 4.1 24 252-275 80-103 (108)
345 PRK14139 heat shock protein Gr 28.8 1.3E+02 0.0029 30.8 6.0 22 256-277 44-65 (185)
346 PRK12704 phosphodiesterase; Pr 28.8 3.6E+02 0.0077 31.6 10.0 11 587-597 363-373 (520)
347 PF15254 CCDC14: Coiled-coil d 28.7 2.8E+02 0.006 34.5 9.3 36 248-283 445-480 (861)
348 PF11690 DUF3287: Protein of u 28.7 1.9E+02 0.0041 27.8 6.5 40 242-281 40-81 (109)
349 PHA03161 hypothetical protein; 28.6 2.6E+02 0.0056 28.3 7.7 12 270-281 94-105 (150)
350 PF05308 Mito_fiss_reg: Mitoch 28.4 3.3E+02 0.0071 29.3 9.0 19 252-270 123-141 (253)
351 PRK10361 DNA recombination pro 28.3 3.6E+02 0.0078 31.6 9.9 11 477-488 243-253 (475)
352 PRK14151 heat shock protein Gr 28.3 1.2E+02 0.0026 30.7 5.6 36 247-282 23-58 (176)
353 PF09486 HrpB7: Bacterial type 28.3 1.7E+02 0.0037 29.5 6.5 42 243-284 78-119 (158)
354 PRK06835 DNA replication prote 28.2 3.2E+02 0.0069 30.0 9.1 58 226-283 11-83 (329)
355 PRK06798 fliD flagellar cappin 28.2 2.9E+02 0.0064 31.5 9.1 31 253-283 406-436 (440)
356 PF11285 DUF3086: Protein of u 27.9 1.1E+02 0.0024 33.4 5.4 28 246-273 6-33 (283)
357 KOG0933 Structural maintenance 27.9 2.8E+02 0.0061 35.4 9.3 38 659-712 1130-1167(1174)
358 TIGR01242 26Sp45 26S proteasom 27.8 1.4E+02 0.003 32.3 6.3 37 244-280 6-42 (364)
359 COG4942 Membrane-bound metallo 27.8 4.3E+02 0.0094 30.6 10.2 7 412-418 352-358 (420)
360 PF12911 OppC_N: N-terminal TM 27.7 32 0.0007 27.5 1.2 28 360-388 13-40 (56)
361 PF13863 DUF4200: Domain of un 27.7 4.8E+02 0.01 23.9 9.4 29 256-284 79-107 (126)
362 PF10669 Phage_Gp23: Protein g 27.6 2E+02 0.0043 27.6 6.4 19 218-236 50-68 (121)
363 PF06305 DUF1049: Protein of u 27.6 62 0.0013 26.7 2.9 8 252-259 56-63 (68)
364 cd07627 BAR_Vps5p The Bin/Amph 27.5 1.6E+02 0.0034 30.0 6.3 48 240-287 7-54 (216)
365 PRK14155 heat shock protein Gr 27.5 1.2E+02 0.0025 31.7 5.4 21 247-267 30-50 (208)
366 PF09311 Rab5-bind: Rabaptin-l 27.5 36 0.00078 34.0 1.7 42 246-287 10-51 (181)
367 PF15619 Lebercilin: Ciliary p 27.5 98 0.0021 31.8 4.8 12 271-282 67-78 (194)
368 PF06818 Fez1: Fez1; InterPro 27.5 2.4E+02 0.0052 29.7 7.6 44 241-284 63-106 (202)
369 KOG2072 Translation initiation 27.4 4E+02 0.0087 33.5 10.3 66 220-285 605-690 (988)
370 PRK13182 racA polar chromosome 27.4 2.9E+02 0.0063 28.1 8.0 25 245-269 86-110 (175)
371 PRK14161 heat shock protein Gr 27.3 1.5E+02 0.0032 30.2 6.0 37 247-283 22-58 (178)
372 PRK03947 prefoldin subunit alp 27.1 2E+02 0.0044 27.1 6.6 16 224-239 95-110 (140)
373 PF06305 DUF1049: Protein of u 27.1 78 0.0017 26.1 3.4 20 258-277 48-67 (68)
374 KOG3335 Predicted coiled-coil 27.1 3E+02 0.0065 28.6 8.0 33 253-285 108-140 (181)
375 cd00890 Prefoldin Prefoldin is 26.9 1.7E+02 0.0036 26.6 5.7 30 247-276 97-126 (129)
376 PF05565 Sipho_Gp157: Siphovir 26.8 1.8E+02 0.0038 28.8 6.3 40 244-283 47-86 (162)
377 PF00038 Filament: Intermediat 26.8 5.5E+02 0.012 27.0 10.3 13 269-281 266-278 (312)
378 PRK03918 chromosome segregatio 26.8 3.9E+02 0.0085 32.1 10.2 16 698-713 862-877 (880)
379 PRK11448 hsdR type I restricti 26.8 2.2E+02 0.0049 36.3 8.6 44 233-276 166-209 (1123)
380 PF09744 Jnk-SapK_ap_N: JNK_SA 26.8 4.4E+02 0.0095 26.5 9.0 33 248-280 86-118 (158)
381 PF14389 Lzipper-MIP1: Leucine 26.7 1.9E+02 0.0041 26.2 5.9 21 262-282 58-78 (88)
382 PF03962 Mnd1: Mnd1 family; I 26.5 3.7E+02 0.008 27.4 8.6 45 237-281 103-151 (188)
383 PF14362 DUF4407: Domain of un 26.5 3.9E+02 0.0085 28.3 9.2 37 247-283 131-167 (301)
384 KOG0804 Cytoplasmic Zn-finger 26.5 4.7E+02 0.01 30.8 10.2 64 219-282 374-445 (493)
385 PF09325 Vps5: Vps5 C terminal 26.5 2.3E+02 0.0051 28.2 7.2 48 241-288 28-75 (236)
386 PF02996 Prefoldin: Prefoldin 26.4 1.5E+02 0.0034 26.7 5.4 16 252-267 99-114 (120)
387 PF10883 DUF2681: Protein of u 26.3 1.4E+02 0.003 27.6 5.1 14 246-259 32-45 (87)
388 TIGR01843 type_I_hlyD type I s 26.3 2.8E+02 0.006 29.7 8.1 14 406-419 341-354 (423)
389 PF09766 FimP: Fms-interacting 26.2 1.8E+02 0.0038 32.3 6.8 60 218-281 86-145 (355)
390 TIGR02977 phageshock_pspA phag 26.2 4.6E+02 0.0099 26.9 9.3 33 243-275 105-137 (219)
391 cd07664 BAR_SNX2 The Bin/Amphi 26.2 2E+02 0.0043 30.3 6.8 48 240-287 25-72 (234)
392 TIGR01554 major_cap_HK97 phage 26.1 4.3E+02 0.0093 28.9 9.6 42 240-281 23-64 (378)
393 COG3879 Uncharacterized protei 26.1 1.5E+02 0.0032 32.0 6.0 25 247-271 60-84 (247)
394 KOG0994 Extracellular matrix g 26.0 3.1E+02 0.0067 35.8 9.2 44 240-283 1706-1749(1758)
395 PF13600 DUF4140: N-terminal d 25.9 1.7E+02 0.0036 26.2 5.5 22 247-268 80-101 (104)
396 KOG0243 Kinesin-like protein [ 25.9 3.7E+02 0.008 34.4 9.9 14 52-65 94-107 (1041)
397 KOG0980 Actin-binding protein 25.8 4.1E+02 0.0089 33.6 10.1 46 232-277 398-443 (980)
398 PRK00286 xseA exodeoxyribonucl 25.7 4.4E+02 0.0095 29.5 9.8 20 266-285 373-392 (438)
399 cd07623 BAR_SNX1_2 The Bin/Amp 25.7 2E+02 0.0043 29.6 6.6 46 240-285 15-60 (224)
400 PRK14147 heat shock protein Gr 25.7 1.5E+02 0.0032 30.0 5.6 18 248-265 36-53 (172)
401 PF14662 CCDC155: Coiled-coil 25.6 1.5E+02 0.0033 30.9 5.7 32 246-277 10-41 (193)
402 PF04111 APG6: Autophagy prote 25.5 6.3E+02 0.014 27.7 10.7 25 259-283 100-124 (314)
403 KOG0612 Rho-associated, coiled 25.3 3.4E+02 0.0074 35.3 9.5 46 236-281 493-538 (1317)
404 PRK14141 heat shock protein Gr 25.2 1.3E+02 0.0028 31.5 5.3 29 252-280 39-67 (209)
405 PF07028 DUF1319: Protein of u 25.2 4.4E+02 0.0095 26.1 8.4 46 241-286 43-88 (126)
406 PRK14872 rod shape-determining 25.2 1.2E+02 0.0025 34.0 5.2 31 251-281 57-87 (337)
407 PRK00106 hypothetical protein; 25.1 4.4E+02 0.0096 31.3 10.0 14 673-686 485-498 (535)
408 PF04849 HAP1_N: HAP1 N-termin 25.0 1.1E+02 0.0024 33.8 4.9 30 244-273 160-189 (306)
409 PF15358 TSKS: Testis-specific 24.8 5E+02 0.011 30.4 10.0 13 271-283 220-232 (558)
410 PRK06569 F0F1 ATP synthase sub 24.8 6.6E+02 0.014 25.4 9.8 32 224-255 42-73 (155)
411 COG1842 PspA Phage shock prote 24.8 5.5E+02 0.012 27.1 9.7 39 243-281 105-143 (225)
412 PF06637 PV-1: PV-1 protein (P 24.7 9.9E+02 0.022 27.8 12.1 13 271-283 380-392 (442)
413 PF02388 FemAB: FemAB family; 24.7 1.9E+02 0.0041 32.3 6.7 26 261-286 276-301 (406)
414 PF05103 DivIVA: DivIVA protei 24.7 28 0.00061 31.9 0.4 36 246-281 34-69 (131)
415 PRK14011 prefoldin subunit alp 24.6 1.9E+02 0.0042 28.5 6.1 38 231-271 85-122 (144)
416 TIGR03495 phage_LysB phage lys 24.6 2.6E+02 0.0057 27.6 6.9 28 254-281 71-98 (135)
417 KOG4010 Coiled-coil protein TP 24.6 98 0.0021 32.4 4.2 36 248-283 48-83 (208)
418 cd07429 Cby_like Chibby, a nuc 24.6 1.7E+02 0.0036 28.1 5.4 26 246-271 81-106 (108)
419 PRK01203 prefoldin subunit alp 24.5 1.9E+02 0.0041 28.4 5.9 40 247-286 3-42 (130)
420 KOG1103 Predicted coiled-coil 24.4 1.9E+02 0.004 33.1 6.5 42 245-286 246-287 (561)
421 KOG1656 Protein involved in gl 24.4 1.7E+02 0.0038 31.0 5.9 26 226-251 54-79 (221)
422 KOG4378 Nuclear protein COP1 [ 24.3 68 0.0015 37.9 3.3 23 258-280 650-672 (673)
423 PF15290 Syntaphilin: Golgi-lo 24.3 1.9E+02 0.0042 32.0 6.4 11 271-281 123-133 (305)
424 PF14645 Chibby: Chibby family 24.2 1E+02 0.0023 29.3 4.0 27 256-282 69-95 (116)
425 KOG0250 DNA repair protein RAD 24.1 3.8E+02 0.0082 34.4 9.6 54 227-280 672-725 (1074)
426 PF09457 RBD-FIP: FIP domain ; 24.1 3E+02 0.0066 22.9 6.1 39 247-285 3-41 (48)
427 PRK03918 chromosome segregatio 24.0 4.9E+02 0.011 31.3 10.3 9 694-702 870-878 (880)
428 PF14723 SSFA2_C: Sperm-specif 24.0 3.9E+02 0.0084 27.8 8.1 49 235-283 110-170 (179)
429 KOG4010 Coiled-coil protein TP 23.9 2.1E+02 0.0045 30.2 6.3 19 379-397 141-159 (208)
430 PF09325 Vps5: Vps5 C terminal 23.9 4.1E+02 0.0088 26.5 8.3 44 228-271 133-183 (236)
431 KOG0996 Structural maintenance 23.8 3.1E+02 0.0067 35.5 8.8 41 234-274 532-572 (1293)
432 PF10481 CENP-F_N: Cenp-F N-te 23.8 3.6E+02 0.0078 29.9 8.3 18 266-283 96-113 (307)
433 PF12325 TMF_TATA_bd: TATA ele 23.7 6.7E+02 0.015 24.2 9.7 12 226-237 40-51 (120)
434 PRK05771 V-type ATP synthase s 23.6 4.8E+02 0.01 30.9 10.0 40 247-286 89-128 (646)
435 PRK14163 heat shock protein Gr 23.6 1.8E+02 0.0039 30.7 5.9 20 248-267 58-77 (214)
436 COG0172 SerS Seryl-tRNA synthe 23.6 2.6E+02 0.0056 32.3 7.6 54 228-281 50-105 (429)
437 KOG0977 Nuclear envelope prote 23.6 2.1E+02 0.0045 34.0 7.0 20 237-256 35-54 (546)
438 KOG0249 LAR-interacting protei 23.5 2.1E+02 0.0046 35.3 7.1 24 590-619 604-627 (916)
439 KOG0614 cGMP-dependent protein 23.4 3.7E+02 0.0081 32.5 8.8 40 240-279 34-73 (732)
440 PRK10963 hypothetical protein; 23.4 1.5E+02 0.0033 30.5 5.3 19 250-268 43-61 (223)
441 PF05483 SCP-1: Synaptonemal c 23.4 4.3E+02 0.0093 32.6 9.5 43 241-283 584-626 (786)
442 KOG0561 bHLH transcription fac 23.4 2.8E+02 0.006 31.2 7.4 27 241-267 102-128 (373)
443 PF06632 XRCC4: DNA double-str 23.3 2.1E+02 0.0046 31.9 6.7 14 272-285 194-207 (342)
444 PF04859 DUF641: Plant protein 23.2 1.9E+02 0.0041 28.4 5.6 40 244-283 80-119 (131)
445 KOG1955 Ral-GTPase effector RA 23.1 2.3E+02 0.0051 33.7 7.2 54 225-285 679-732 (737)
446 COG5509 Uncharacterized small 23.1 1.2E+02 0.0026 26.7 3.8 25 261-285 28-52 (65)
447 COG1730 GIM5 Predicted prefold 22.9 2.2E+02 0.0047 28.4 6.1 49 220-268 91-139 (145)
448 PRK15396 murein lipoprotein; P 22.9 1.9E+02 0.004 26.3 5.1 36 246-281 34-69 (78)
449 COG2433 Uncharacterized conser 22.9 4E+02 0.0086 32.4 9.0 25 482-506 595-619 (652)
450 TIGR01843 type_I_hlyD type I s 22.8 6.5E+02 0.014 27.0 10.1 36 246-281 146-181 (423)
451 PF09340 NuA4: Histone acetylt 22.8 1.5E+02 0.0033 26.5 4.6 30 244-273 2-31 (80)
452 PHA03065 Hypothetical protein; 22.6 2.4E+02 0.0051 32.8 7.0 52 232-283 89-152 (438)
453 COG4238 Murein lipoprotein [Ce 22.6 2.4E+02 0.0051 25.9 5.6 38 246-283 34-71 (78)
454 cd07624 BAR_SNX7_30 The Bin/Am 22.5 2E+02 0.0044 29.0 5.9 47 241-287 18-64 (200)
455 KOG0728 26S proteasome regulat 22.5 2.3E+02 0.0051 31.5 6.6 46 238-283 18-63 (404)
456 KOG0163 Myosin class VI heavy 22.5 4.6E+02 0.0099 33.0 9.5 12 51-62 746-757 (1259)
457 PHA02109 hypothetical protein 22.4 2.2E+02 0.0048 29.8 6.1 35 241-275 190-224 (233)
458 PF14257 DUF4349: Domain of un 22.3 2.7E+02 0.0059 28.9 7.0 29 255-283 166-194 (262)
459 KOG4643 Uncharacterized coiled 22.3 3.7E+02 0.0081 34.4 8.9 24 224-247 374-397 (1195)
460 PF07412 Geminin: Geminin; In 22.3 2.1E+02 0.0045 30.1 6.0 8 276-283 160-167 (200)
461 KOG0163 Myosin class VI heavy 22.2 4.1E+02 0.0089 33.4 9.1 24 231-254 963-986 (1259)
462 PF05769 DUF837: Protein of un 22.1 5.6E+02 0.012 26.2 8.9 23 261-283 156-178 (181)
463 KOG1645 RING-finger-containing 22.1 3.3E+02 0.0071 31.7 7.9 61 217-283 51-111 (463)
464 PF06698 DUF1192: Protein of u 22.0 1.3E+02 0.0027 26.1 3.7 24 261-284 24-47 (59)
465 COG1792 MreC Cell shape-determ 21.9 2.4E+02 0.0053 30.4 6.7 33 255-287 70-105 (284)
466 PF09728 Taxilin: Myosin-like 21.9 5.8E+02 0.013 28.0 9.6 46 227-272 54-99 (309)
467 PF07227 DUF1423: Protein of u 21.9 1.7E+02 0.0037 33.9 5.8 39 235-273 341-379 (446)
468 PRK13923 putative spore coat p 21.9 3.8E+02 0.0082 27.6 7.6 28 256-283 109-136 (170)
469 PRK14157 heat shock protein Gr 21.9 1.8E+02 0.0039 31.0 5.5 18 249-266 96-113 (227)
470 PTZ00464 SNF-7-like protein; P 21.8 6.9E+02 0.015 26.2 9.7 21 232-252 60-80 (211)
471 PRK05771 V-type ATP synthase s 21.8 1.9E+02 0.0042 34.0 6.4 39 241-279 90-128 (646)
472 PF08581 Tup_N: Tup N-terminal 21.8 3.5E+02 0.0075 24.5 6.6 38 247-284 28-76 (79)
473 KOG4447 Transcription factor T 21.8 5.3E+02 0.011 26.6 8.4 41 243-283 66-106 (173)
474 COG1196 Smc Chromosome segrega 21.8 4.2E+02 0.0091 33.7 9.6 8 499-506 1067-1074(1163)
475 PRK03992 proteasome-activating 21.8 2.8E+02 0.0061 30.7 7.3 36 244-279 15-50 (389)
476 PF13805 Pil1: Eisosome compon 21.8 2.4E+02 0.0053 30.8 6.6 48 223-270 144-191 (271)
477 PF04949 Transcrip_act: Transc 21.7 5.7E+02 0.012 26.2 8.6 65 219-283 40-109 (159)
478 COG5019 CDC3 Septin family pro 21.7 4.9E+02 0.011 29.8 9.1 55 229-283 313-367 (373)
479 COG4420 Predicted membrane pro 21.6 3.2E+02 0.0069 28.7 7.1 58 228-285 109-168 (191)
480 COG1729 Uncharacterized protei 21.6 1.5E+02 0.0033 32.0 5.1 28 246-274 58-85 (262)
481 PF09727 CortBP2: Cortactin-bi 21.6 4.5E+02 0.0097 27.5 8.2 28 223-252 94-121 (192)
482 PF04568 IATP: Mitochondrial A 21.5 2.1E+02 0.0046 27.0 5.3 15 238-252 66-80 (100)
483 PF04899 MbeD_MobD: MbeD/MobD 21.5 2.5E+02 0.0055 24.9 5.5 29 255-283 25-53 (70)
484 KOG4673 Transcription factor T 21.4 4.4E+02 0.0096 32.7 9.1 55 229-283 569-623 (961)
485 COG3132 Uncharacterized protei 21.3 1.1E+02 0.0023 32.0 3.7 58 227-284 136-211 (215)
486 PF03993 DUF349: Domain of Unk 21.3 4.9E+02 0.011 21.7 8.9 56 232-287 8-72 (77)
487 PF12128 DUF3584: Protein of u 21.2 5.5E+02 0.012 32.9 10.5 51 233-283 479-529 (1201)
488 PRK14145 heat shock protein Gr 21.2 2.5E+02 0.0054 29.2 6.3 35 248-282 49-83 (196)
489 PF10473 CENP-F_leu_zip: Leuci 21.2 6.6E+02 0.014 25.0 8.9 19 263-281 57-75 (140)
490 PF03961 DUF342: Protein of un 21.1 4.7E+02 0.01 29.6 8.9 34 244-277 375-408 (451)
491 PF13118 DUF3972: Protein of u 20.9 3.2E+02 0.007 26.9 6.6 41 243-283 84-124 (126)
492 PF11336 DUF3138: Protein of u 20.9 2.4E+02 0.0052 33.0 6.6 29 258-286 25-53 (514)
493 PF11544 Spc42p: Spindle pole 20.9 6.5E+02 0.014 23.0 9.6 37 237-273 19-55 (76)
494 PRK02224 chromosome segregatio 20.9 5.7E+02 0.012 30.9 10.1 11 386-396 817-827 (880)
495 TIGR00993 3a0901s04IAP86 chlor 20.8 3.9E+02 0.0086 33.0 8.6 32 227-258 414-445 (763)
496 PRK14153 heat shock protein Gr 20.8 2.3E+02 0.005 29.4 6.0 21 246-266 49-69 (194)
497 KOG3433 Protein involved in me 20.7 4.6E+02 0.01 27.6 8.0 59 223-281 95-153 (203)
498 PRK10265 chaperone-modulator p 20.7 1.2E+02 0.0026 27.8 3.6 27 262-288 75-101 (101)
499 PF06295 DUF1043: Protein of u 20.7 3.1E+02 0.0068 26.2 6.5 49 235-283 16-64 (128)
500 cd07647 F-BAR_PSTPIP The F-BAR 20.6 9.1E+02 0.02 25.0 10.3 63 219-281 153-216 (239)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.44 E-value=5e-13 Score=110.17 Aligned_cols=63 Identities=41% Similarity=0.518 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 220 EEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 220 kEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
+++|+.+|+++||+||++||+||++|+.+||.++..|+.+|..|+.++..|+.|+..|++++.
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356899999999999999999999999999999999999999999999999999999999875
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.35 E-value=4.4e-12 Score=104.44 Aligned_cols=63 Identities=46% Similarity=0.598 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 219 EEEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 219 EkEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
+++.|+.+|+++||+||++||+||++|+++||.+|..|+.+|..|+.++..|..++..|+.++
T Consensus 1 e~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 1 EKEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356789999999999999999999999999999999999999999999999999999999876
No 3
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.15 E-value=4.8e-11 Score=124.30 Aligned_cols=57 Identities=33% Similarity=0.482 Sum_probs=51.7
Q ss_pred CCChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 216 NLGEEEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMA 272 (727)
Q Consensus 216 ~eeEkEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~Lqa 272 (727)
..||...||+-||+|||||||.||+|||+||++||.+|..||.+|..|-++|..|.+
T Consensus 284 ~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKe 340 (348)
T KOG3584|consen 284 GAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKE 340 (348)
T ss_pred cchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHH
Confidence 557888999999999999999999999999999999999999999888877776643
No 4
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=99.15 E-value=2.6e-11 Score=132.35 Aligned_cols=75 Identities=32% Similarity=0.411 Sum_probs=70.4
Q ss_pred CCCCCChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 035544 213 NDHNLGEEEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAM 287 (727)
Q Consensus 213 ~~~~eeEkEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~ 287 (727)
.-++.+|+..||.||++||.++||.||+|||+||+.||.+|....+||++|+++++.|+.+|+.|-+||.++.+.
T Consensus 241 PLTKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~ 315 (472)
T KOG0709|consen 241 PLTKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTL 315 (472)
T ss_pred CchHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 346778999999999999999999999999999999999999999999999999999999999999999976544
No 5
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.14 E-value=2.5e-10 Score=126.14 Aligned_cols=65 Identities=35% Similarity=0.454 Sum_probs=58.0
Q ss_pred CCCChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 035544 215 HNLGEEEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNA 286 (727)
Q Consensus 215 ~~eeEkEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a 286 (727)
.+.|.+--||+.|++||||+|++||+|||+|+.-||.+++.|.+|| ++|++||.+||+||....+
T Consensus 273 ~~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~En-------e~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 273 VGSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSEN-------EQLKKENATLKRQLDELVS 337 (655)
T ss_pred CccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhHHHHHHHHHHhh
Confidence 4567899999999999999999999999999999999999998888 4567899999999987543
No 6
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.07 E-value=7.4e-10 Score=89.15 Aligned_cols=52 Identities=44% Similarity=0.546 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 221 EMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAE 273 (727)
Q Consensus 221 EeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaE 273 (727)
++++.+|. +||+||++||+|||+++++||.++..|+.+|..|+.++..|+.|
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45677777 99999999999999999999999999999999999999999876
No 7
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=98.75 E-value=2.8e-08 Score=101.88 Aligned_cols=65 Identities=29% Similarity=0.349 Sum_probs=54.7
Q ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Q 035544 218 GEEEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIAD-------LNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 218 eEkEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqe-------Lr~qls~LqaEN~~LRqQL~ 282 (727)
-..|+|-+||+++||+|||.+|.|||++++++|.++++|+.||+. |+++.+.|.++|.+|++.|.
T Consensus 64 LS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le 135 (292)
T KOG4005|consen 64 LSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELE 135 (292)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 357889999999999999999999999999999999988876665 55666667777888877776
No 8
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=98.51 E-value=3.3e-07 Score=95.05 Aligned_cols=67 Identities=34% Similarity=0.460 Sum_probs=61.1
Q ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 218 GEEEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 218 eEkEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
+++..|-+|..+|||+||.+||+||-++|..||.+|+.|..+|.+|...+..|.....+|||++..|
T Consensus 201 ~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~h 267 (279)
T KOG0837|consen 201 DQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEH 267 (279)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666899999999999999999999999999999999999999999999999999999984
No 9
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=98.20 E-value=1.1e-05 Score=84.91 Aligned_cols=64 Identities=23% Similarity=0.233 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 220 EEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 220 kEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
++.+..|..++|..||.|-|+|||+..+.|+.+++.|+.+|++|+.++..|+.|++.|||.+..
T Consensus 224 ~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 224 PEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILE 287 (294)
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444467788889999999999999999999999999999999999999999999999865
No 10
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.07 E-value=3.6e-08 Score=87.09 Aligned_cols=66 Identities=32% Similarity=0.476 Sum_probs=52.9
Q ss_pred CCChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 216 NLGEEEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 216 ~eeEkEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
.++..+.|..||..+||.||+.||.||++++.+||.++..|..+...|..++..+..|...|++++
T Consensus 23 ~~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~ 88 (92)
T PF03131_consen 23 EEQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKL 88 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577899999999999999999999999999999998887777777766666666655554443
No 11
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=97.97 E-value=2.2e-05 Score=81.58 Aligned_cols=67 Identities=21% Similarity=0.320 Sum_probs=60.5
Q ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 218 GEEEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 218 eEkEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
+.++.+-..|+.||-+||++||.+.|+..+++..|+..|+.||+.|+.++.+|+.|+..||+.+...
T Consensus 189 ~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~ 255 (269)
T KOG3119|consen 189 EKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQL 255 (269)
T ss_pred hcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3355566677888999999999999999999999999999999999999999999999999998763
No 12
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.35 E-value=0.0012 Score=63.33 Aligned_cols=72 Identities=19% Similarity=0.238 Sum_probs=63.7
Q ss_pred CCChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 035544 216 NLGEEEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAM 287 (727)
Q Consensus 216 ~eeEkEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~ 287 (727)
.++--..|..||-++||=-|+-||-|+-+.-.+||.+...|.+|..+|+++++.++.|...|+.....+...
T Consensus 46 reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~ 117 (135)
T KOG4196|consen 46 REEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNS 117 (135)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345577888999999999999999999999999999999999999999999999999999999888774443
No 13
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=97.16 E-value=0.00042 Score=79.22 Aligned_cols=61 Identities=28% Similarity=0.290 Sum_probs=56.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 223 KRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 223 KR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
|-.||+=|||+|||+||+||-.-|.+||..+..|+.+-.+|.++-..+..+...+++||..
T Consensus 490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~ 550 (604)
T KOG3863|consen 490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSE 550 (604)
T ss_pred hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3367888999999999999999999999999999999999999999999999999999887
No 14
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=96.62 E-value=0.00018 Score=78.31 Aligned_cols=75 Identities=28% Similarity=0.257 Sum_probs=70.3
Q ss_pred ChHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 035544 218 GEEEMKRKARLMRNRESAQL---SRQRKKHYVEELEDKVRNMH-STIADLNSKISFFMAENASLKQQLSGSNAMPPPLG 292 (727)
Q Consensus 218 eEkEeKR~RRllRNRESAqr---SRqRKKqYVeeLE~KVk~LE-sENqeLr~qls~LqaEN~~LRqQL~~~~a~pp~~g 292 (727)
.+.+.|+..|++||+.||.+ ||.||+.+...|+.+|+.|+ .++..|+.+++.|+.|+..|...+..|+.+|..-+
T Consensus 149 ~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~~~l~~h~~~~~~~~ 227 (395)
T KOG1414|consen 149 PEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLEKELNTHRPPCSGNG 227 (395)
T ss_pred CcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHHHHHhccCCCcccCC
Confidence 56788999999999999999 99999999999999999999 99999999999999999999999999998876543
No 15
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=96.03 E-value=0.0011 Score=72.27 Aligned_cols=71 Identities=28% Similarity=0.344 Sum_probs=57.6
Q ss_pred CChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccCCC
Q 035544 217 LGEEEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLN-SKISFFMAENASLKQQLSGSNAM 287 (727)
Q Consensus 217 eeEkEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr-~qls~LqaEN~~LRqQL~~~~a~ 287 (727)
.++.++++.+.++|||.||-+||+|||.|+..|+.+...+..+|..|. .+++.|..++..+.+-+..++.|
T Consensus 279 ~~~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 350 (395)
T KOG1414|consen 279 DEDPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNEVKQLSQALLTHKDC 350 (395)
T ss_pred CCCchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhHHhhhcccccccccC
Confidence 345566667789999999999999999999999999999999999999 67777777777776633334444
No 16
>PRK00295 hypothetical protein; Provisional
Probab=93.15 E-value=0.53 Score=40.54 Aligned_cols=41 Identities=24% Similarity=0.216 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcc
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKIS-------FFMAENASLKQQLSGS 284 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls-------~LqaEN~~LRqQL~~~ 284 (727)
++|.+||.++..++..+.+|...+. .|+.+.+.|+.+|...
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3488999998887777777665554 4555555555555553
No 17
>PRK00736 hypothetical protein; Provisional
Probab=93.02 E-value=0.57 Score=40.35 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcc
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKI-------SFFMAENASLKQQLSGS 284 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~ql-------s~LqaEN~~LRqQL~~~ 284 (727)
++|.+||.++..++..+.+|...+ ..|+.+.+.|..+|...
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 458899999888777777665544 45556666666666553
No 18
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=92.92 E-value=0.82 Score=52.09 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAMP 288 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~p 288 (727)
++.|+++++.|.++.++++++|+.|++||..|++|+...+..+
T Consensus 85 LaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~ 127 (475)
T PRK13729 85 YEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANP 127 (475)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 3444444444446677899999999999999999996655544
No 19
>PRK02793 phi X174 lysis protein; Provisional
Probab=92.44 E-value=0.7 Score=40.21 Aligned_cols=42 Identities=24% Similarity=0.281 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhccC
Q 035544 244 HYVEELEDKVRNMHSTIADLNSK-------ISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~q-------ls~LqaEN~~LRqQL~~~~ 285 (727)
++|.+||.++...+..+.+|... +..|+.+.+.|+++|...+
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56788888888777766666544 4555666666666666543
No 20
>PRK02119 hypothetical protein; Provisional
Probab=92.26 E-value=0.75 Score=40.20 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhccC
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKI-------SFFMAENASLKQQLSGSN 285 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~ql-------s~LqaEN~~LRqQL~~~~ 285 (727)
.+++.+||.++...+..+.+|...+ ..|+.+.+.|+++|....
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3567888888887777666665544 455566666666665533
No 21
>PRK04406 hypothetical protein; Provisional
Probab=91.72 E-value=0.91 Score=39.94 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhccC
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKI-------SFFMAENASLKQQLSGSN 285 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~ql-------s~LqaEN~~LRqQL~~~~ 285 (727)
++|.+||.++..++..+.+|...+ ..|+.+.+.|+++|....
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467888888877777666665544 455555666666665533
No 22
>PRK00846 hypothetical protein; Provisional
Probab=90.58 E-value=1.5 Score=39.23 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhccC
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKIS-------FFMAENASLKQQLSGSN 285 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~qls-------~LqaEN~~LRqQL~~~~ 285 (727)
.++|.+||.++...+..+.+|...+. .|+.+.+.|+.+|....
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46678888888776666666655554 45555555555555533
No 23
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.00 E-value=2.3 Score=43.58 Aligned_cols=43 Identities=9% Similarity=0.146 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 241 RKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 241 RKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
..++.+++++..+..|+++|++|+++++.+++|+..|++++..
T Consensus 122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666667777788888888888777777777777655
No 24
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=89.63 E-value=1 Score=47.35 Aligned_cols=50 Identities=24% Similarity=0.370 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035544 239 RQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAMP 288 (727)
Q Consensus 239 RqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~p 288 (727)
|.|=|+...+||+++..+.+++..|+.+++.|++.|..|=.++.-.....
T Consensus 88 RDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 88 RDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 34444556999999999999999999999999999999988877654443
No 25
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=89.55 E-value=1.4 Score=41.92 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 248 ELEDKVRNMHSTIADLNSKISFFMAENASLKQ 279 (727)
Q Consensus 248 eLE~KVk~LEsENqeLr~qls~LqaEN~~LRq 279 (727)
-..++|+.|+.++.+|.+++.+|++||.-||.
T Consensus 64 AVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 64 AVREEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666777777777777777777777764
No 26
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=88.75 E-value=1.5 Score=38.02 Aligned_cols=40 Identities=20% Similarity=0.161 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+.|+.|=..++.|+.||..|+.++..++.|+..|++++..
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~ 46 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQ 46 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777889999999999999999999999888765
No 27
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=87.99 E-value=1.2 Score=41.68 Aligned_cols=41 Identities=17% Similarity=0.407 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhccCC
Q 035544 246 VEELEDKVRNMHSTIADLNSKI-------SFFMAENASLKQQLSGSNA 286 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~ql-------s~LqaEN~~LRqQL~~~~a 286 (727)
+.+||+++..|..+..+|+.++ +.|+.||..||.+|.....
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666655555555555555 4556667777777776443
No 28
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=87.68 E-value=2.4 Score=45.04 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 256 MHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 256 LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
|-.+|.+|..+++.+.+|...|+++.....
T Consensus 123 L~~~n~el~~~le~~~~~l~~~~~~~~~~~ 152 (292)
T KOG4005|consen 123 LLAKNHELDSELELLRQELAELKQQQQHNT 152 (292)
T ss_pred HHhhhHHHHHHHHHHHHHHHhhHHHHHHhh
Confidence 334666666777777777777776655433
No 29
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=87.61 E-value=3.2 Score=42.97 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccC
Q 035544 240 QRKKHYVEELEDKVRNMHSTIADLNSKIS---FFMAENASLKQQLSGSN 285 (727)
Q Consensus 240 qRKKqYVeeLE~KVk~LEsENqeLr~qls---~LqaEN~~LRqQL~~~~ 285 (727)
-..-....+|.++.+.|++||.+|+.++. .+++||.+||+.|....
T Consensus 65 ~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~~ 113 (276)
T PRK13922 65 FESLASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLKE 113 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 34445567788888888888888887776 67899999999887543
No 30
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=87.17 E-value=1.5 Score=36.72 Aligned_cols=43 Identities=23% Similarity=0.269 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 241 RKKHYVEELEDKVRNMHS----TIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 241 RKKqYVeeLE~KVk~LEs----ENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
|+...+++||.+++.-.+ +....+.+|..|+.||..||.+|..
T Consensus 1 kw~~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~ 47 (52)
T PF12808_consen 1 KWLLRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELER 47 (52)
T ss_pred CHHHHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888775432 4556788999999999999999875
No 31
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=85.94 E-value=1.8 Score=44.07 Aligned_cols=46 Identities=30% Similarity=0.414 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 221 EMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMA 272 (727)
Q Consensus 221 EeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~Lqa 272 (727)
|-.|.+|.++++ -+..++.+.+|+.+++.|+.+.++++..+.+|-.
T Consensus 89 Ey~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~ 134 (181)
T KOG3335|consen 89 EYWRQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQLHS 134 (181)
T ss_pred hhHHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666 5667778888888888888877777777766653
No 32
>PF15058 Speriolin_N: Speriolin N terminus
Probab=85.93 E-value=4.4 Score=41.84 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNA 286 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a 286 (727)
+-|-++++.|-.||++|++++. |..||++||.-|.+..+
T Consensus 8 eGlrhqierLv~ENeeLKKlVr-LirEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVR-LIRENHELKSALGEACA 46 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHhhc
Confidence 4566778888899999998886 66799999999887443
No 33
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=85.50 E-value=2.8 Score=36.78 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQ 280 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQ 280 (727)
|..|+.++..|+.+|..|......|+.||..|++.
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555543
No 34
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=85.15 E-value=16 Score=38.74 Aligned_cols=61 Identities=16% Similarity=0.269 Sum_probs=47.6
Q ss_pred CCChHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 216 NLGEEEMKRKAR----LMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENAS 276 (727)
Q Consensus 216 ~eeEkEeKR~RR----llRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~ 276 (727)
+.+++...|++| +.|-|.+|+.--..-+..+.+||.+.+.|..++.+|+.++..|..--..
T Consensus 190 ~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 190 KKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred cCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444 7778888888778888899999999999999999999999998765443
No 35
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=84.57 E-value=4 Score=35.03 Aligned_cols=42 Identities=26% Similarity=0.309 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcc
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKISF-------FMAENASLKQQLSGS 284 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~qls~-------LqaEN~~LRqQL~~~ 284 (727)
.++|.+||.++..++..+.+|...+.. |+.+.+.|+.+|...
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356888888888877777777655554 455555555555543
No 36
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=84.03 E-value=3.3 Score=38.73 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKISFFMA 272 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~qls~Lqa 272 (727)
|.++.+|.++...|+-||+.|++++..+..
T Consensus 28 K~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 28 KKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444555555555555554433
No 37
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=83.94 E-value=1.5 Score=37.53 Aligned_cols=32 Identities=34% Similarity=0.412 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 251 DKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 251 ~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
++|+.|..++.+|..++.+|+.||..||+...
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~ 45 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNAS 45 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46788999999999999999999999998753
No 38
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=83.84 E-value=2.5 Score=39.87 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcc
Q 035544 246 VEELEDKVRNMHSTIADLN-------SKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr-------~qls~LqaEN~~LRqQL~~~ 284 (727)
+..||+++..|..+..+|+ ++...|+.||..||.+|...
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555544 45555666677777777764
No 39
>PRK04325 hypothetical protein; Provisional
Probab=83.80 E-value=3.8 Score=35.89 Aligned_cols=38 Identities=24% Similarity=0.210 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
++|.+||.++..++..+.+|...+...+.++..|+.+|
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql 46 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQL 46 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34899999998888877777665555444444444333
No 40
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=83.18 E-value=2.5 Score=44.82 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhccC
Q 035544 247 EELEDKVRNMHSTIADLNSKIS----FFMAENASLKQQLSGSN 285 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls----~LqaEN~~LRqQL~~~~ 285 (727)
.+|+++.++|++|+.+|++++. .|++||++||+.|.-..
T Consensus 69 ~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~~ 111 (283)
T TIGR00219 69 NNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSPL 111 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 4566677777777666644443 38899999999887644
No 41
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=83.11 E-value=2.7 Score=48.82 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=46.9
Q ss_pred CCCChHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 215 HNLGEEEMKRKARLMRNRESAQLSRQ---RKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLK 278 (727)
Q Consensus 215 ~~eeEkEeKR~RRllRNRESAqrSRq---RKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LR 278 (727)
.+--.+++|..|-++.--.|-++-++ -=+..+++|+++.++|..||..|++|+..|..||..||
T Consensus 277 ~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 277 IKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 34455666666655555555444443 45677889999999999999999999999999988765
No 42
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=82.76 E-value=9.7 Score=36.64 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=56.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 035544 226 ARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAM 287 (727)
Q Consensus 226 RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~ 287 (727)
.|.+|.|.+.---|.-=|..|..||.+.+.++.-+..|.++|.-|+..+...|..+......
T Consensus 14 ~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~~ 75 (134)
T PF08232_consen 14 HRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKYG 75 (134)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 47889999999999999999999999999999999999999999999999999998874433
No 43
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.66 E-value=3.1 Score=33.62 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 248 ELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 248 eLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
.||..+..|......|......|..||..|+.++...
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888888888888888888887663
No 44
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=82.49 E-value=4.1 Score=38.45 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 240 QRKKHYVEELEDKVRNMHSTIADLNSKISFF 270 (727)
Q Consensus 240 qRKKqYVeeLE~KVk~LEsENqeLr~qls~L 270 (727)
..=|+++.+|.++...|+-||+.|++++..+
T Consensus 25 ~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 25 GALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345556666666666666666666666655
No 45
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=81.69 E-value=5.8 Score=39.86 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 237 LSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 237 rSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
.-.++.+..+.+|..+++.|+.+|..|..++..++.+-..|-+.+...
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RA 151 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA 151 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777777777777777777777777777777777766553
No 46
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=80.34 E-value=15 Score=37.93 Aligned_cols=52 Identities=21% Similarity=0.172 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 035544 235 AQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNA 286 (727)
Q Consensus 235 AqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a 286 (727)
....++.-++.++.|+.+++.|+..|.+|++.+..++.|...|.+++.....
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666777788888888888889999999999999999988887443
No 47
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=80.26 E-value=5.4 Score=34.26 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
..|++|-..|...+.++..|++++..|......+....
T Consensus 18 ~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~~ 55 (69)
T PF04102_consen 18 DTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELEDPS 55 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34677777777788888888888888888888877544
No 48
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.57 E-value=7.2 Score=47.24 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=13.3
Q ss_pred ecCCCCCceeecCcccccchhhccc
Q 035544 604 DASPAPGAIIPASSVANMTAEHRQN 628 (727)
Q Consensus 604 d~s~~~g~ivpas~~~n~s~~~~~n 628 (727)
|+ .+|.+.++-++...|++...|
T Consensus 868 ~~--~t~st~~~~s~es~sae~p~~ 890 (1118)
T KOG1029|consen 868 GA--ITGSTTKIESPESLSAEAPGA 890 (1118)
T ss_pred cc--cccccccccCcccccccCccc
Confidence 55 345566665566666665555
No 49
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=79.41 E-value=10 Score=46.07 Aligned_cols=58 Identities=16% Similarity=0.231 Sum_probs=39.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 226 ARLMRNRESAQLSRQRKKHYVEELEDKVRN---MHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 226 RRllRNRESAqrSRqRKKqYVeeLE~KVk~---LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
--.+-+.+-|.++++|--++-.++++.... .++|.+++.+++..|++|.+.|+.+-.-
T Consensus 460 iD~~vdkak~eeseqkA~e~~kk~~ke~ta~qe~qael~k~e~Ki~~l~ae~~al~s~~~~ 520 (1102)
T KOG1924|consen 460 IDKMVDKAKAEESEQKAAELEKKFDKELTARQEAQAELQKHEEKIKLLEAEKQALSSPSQL 520 (1102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCchhhhhccCcccC
Confidence 345566677777887776666666666543 4455666667777788888888877554
No 50
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=79.18 E-value=18 Score=36.86 Aligned_cols=62 Identities=21% Similarity=0.296 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 220 EEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 220 kEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
.+...+++.+++-+.-..+=+.-|..+..++.+++.|+-++..|..++..++.|-..|..+.
T Consensus 69 ~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 69 EEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677778888777777778888888999999999999999988888888877776554
No 51
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=78.70 E-value=17 Score=37.04 Aligned_cols=24 Identities=25% Similarity=0.138 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHhhcccccccc
Q 035544 365 ASVSFLGLLFFILLFGGLVPLVDV 388 (727)
Q Consensus 365 asvsllgllf~~~~fg~l~p~vn~ 388 (727)
|+++.+-+|..++-+-.-+|+-.+
T Consensus 199 aALgyvahlv~lls~yL~v~Lpy~ 222 (302)
T PF10186_consen 199 AALGYVAHLVSLLSRYLGVPLPYP 222 (302)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCC
Confidence 455555555555555555555544
No 52
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=78.50 E-value=22 Score=35.55 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=36.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 222 MKRKARLMRNRESAQLSRQRKKHYVEELED-------KVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 222 eKR~RRllRNRESAqrSRqRKKqYVeeLE~-------KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.++++.+...+..-+.-....+..+.+++. ++..|.-++..|..++..|+.||..|-+++..
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333333444444443 44455566677788888999999999888764
No 53
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.91 E-value=6.5 Score=35.15 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
+-.|++|-++...|.+|.+.++...+.|+.||..|+++-.
T Consensus 24 QmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~ 63 (79)
T COG3074 24 QMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQN 63 (79)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666677777788888888877643
No 54
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=77.77 E-value=20 Score=35.28 Aligned_cols=61 Identities=20% Similarity=0.336 Sum_probs=51.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 223 KRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 223 KR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+.+.....|++.|-+--.-+|+.+..|+.++..+..+.+.|...+..+..|+..|-+.|..
T Consensus 31 reLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~ 91 (140)
T PF10473_consen 31 RELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQK 91 (140)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445577888888888899999999999999999999999999999998888888777654
No 55
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=77.12 E-value=7.7 Score=39.04 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
...|+.+.+.|+.++.+|+.++..|+.||..|.+++..
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~ 136 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLST 136 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777778888888888888888888777654
No 56
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=75.91 E-value=8.1 Score=34.97 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
|++|..+...|..+++.++.....|+.||..||++..
T Consensus 27 ieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 27 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3344444444444444433334447777777776643
No 57
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=75.71 E-value=6.2 Score=46.56 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
..+..|+.+++.|+.||+.|+..+..|+.|+..|+.+|...
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~ 462 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERF 462 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888888888888888888888888888888888763
No 58
>PRK10884 SH3 domain-containing protein; Provisional
Probab=75.08 E-value=23 Score=36.53 Aligned_cols=42 Identities=5% Similarity=0.088 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 242 KKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.++.+.+|+++.+.|+++++.++.++..|++||..++..+..
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~ 171 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIM 171 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444466677777888888888888887777777777765543
No 59
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=73.81 E-value=13 Score=32.65 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
..+++|..+...|..+|..|+.+..+|+.|-.....+|
T Consensus 25 ~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 25 MENEELKEKNNELKEENEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555544444433
No 60
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=72.35 E-value=33 Score=34.21 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 254 RNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 254 k~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
..++.+.+.|..+++.|+.+|+.|...+..
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 356778899999999999999999877765
No 61
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=71.91 E-value=17 Score=43.47 Aligned_cols=34 Identities=15% Similarity=0.312 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLKQQ 280 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQ 280 (727)
.+||.+++.|+.|....++++..|+.|.+.||..
T Consensus 548 ~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 548 RQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444445545444443
No 62
>PRK14127 cell division protein GpsB; Provisional
Probab=71.75 E-value=12 Score=35.35 Aligned_cols=42 Identities=14% Similarity=0.273 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
++++++-..++.|..||.+|++++..|+.+...++.++....
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 567777778888889999999999999999999998888543
No 63
>PRK11637 AmiB activator; Provisional
Probab=71.37 E-value=30 Score=38.36 Aligned_cols=12 Identities=8% Similarity=0.296 Sum_probs=6.4
Q ss_pred EeecCCceEEEe
Q 035544 480 YVPRNDKLVKID 491 (727)
Q Consensus 480 yvprn~k~vki~ 491 (727)
|++--|.+|.||
T Consensus 355 ~~~~~G~~vii~ 366 (428)
T PRK11637 355 WLQGYGLVVVVE 366 (428)
T ss_pred ccCCcccEEEEE
Confidence 444455566554
No 64
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=71.34 E-value=14 Score=34.32 Aligned_cols=35 Identities=11% Similarity=0.060 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 239 RQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAE 273 (727)
Q Consensus 239 RqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaE 273 (727)
..+.++.+++++++++.|+++|+.|++++..|+..
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 34566677888888888888888888888888763
No 65
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=70.99 E-value=26 Score=36.95 Aligned_cols=42 Identities=5% Similarity=0.191 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 242 KKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
=.+.|++|+.+|..|.-+++++..+++++++..+.|-++|..
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666667777777777777777667765
No 66
>PRK11637 AmiB activator; Provisional
Probab=70.89 E-value=30 Score=38.38 Aligned_cols=13 Identities=8% Similarity=0.181 Sum_probs=8.9
Q ss_pred EEeecCCceEEEe
Q 035544 479 LYVPRNDKLVKID 491 (727)
Q Consensus 479 lyvprn~k~vki~ 491 (727)
++-+-+|+.|.++
T Consensus 342 v~A~~~G~V~~~~ 354 (428)
T PRK11637 342 VKAIADGRVLLAD 354 (428)
T ss_pred EEecCCeEEEEee
Confidence 4667778877764
No 67
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=70.63 E-value=38 Score=29.27 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 242 KKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQ 279 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRq 279 (727)
=|.--..+|.+++.-+..|..|..++..|..+...||.
T Consensus 23 vk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 23 VKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444556677777777777777777777777776664
No 68
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=70.55 E-value=10 Score=31.68 Aligned_cols=33 Identities=12% Similarity=0.267 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 240 QRKKHYVEELEDKVRNMHSTIADLNSKISFFMA 272 (727)
Q Consensus 240 qRKKqYVeeLE~KVk~LEsENqeLr~qls~Lqa 272 (727)
.+.++.+.+|+.+++.++.+|.+|+.+++.|..
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~ 52 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLKN 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344555677777777777777777777777733
No 69
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=69.61 E-value=60 Score=27.03 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKISFFMAENA 275 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~ 275 (727)
...+..|+.+...|..++..|..++..|..||.
T Consensus 32 e~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 32 EEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445678888888888888888888888888773
No 70
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=69.48 E-value=13 Score=31.67 Aligned_cols=38 Identities=13% Similarity=0.312 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+++||.++..++.....++.+++.+..+...|.+-+..
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778877777777777777777766666666655543
No 71
>KOG1055 consensus GABA-B ion channel receptor subunit GABABR1 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=69.47 E-value=5.4 Score=48.25 Aligned_cols=64 Identities=23% Similarity=0.212 Sum_probs=53.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 222 MKRKARLMRNRESAQLSRQRKKHY----VEELED-KVRNMHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 222 eKR~RRllRNRESAqrSRqRKKqY----VeeLE~-KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
-.+.+.+.+|=..|...|..++-. +.+.++ +.+.|+.||.+|++++...+++..+||++|....
T Consensus 725 vpKv~~l~t~p~~~se~q~n~~~~~ss~~~k~~eer~~~lk~EN~~l~~~i~ekee~i~e~~~~l~~~~ 793 (865)
T KOG1055|consen 725 VPKLRHLITNPQWASEAQRNMKTGPSSSVNENEEERLRLLKKENRRLRKKIMEKEERLSELKHQLQPRP 793 (865)
T ss_pred chhheeeecCchhhhhhhhccccCcccccchhHHHHhhhhhcccHHHHHhcccchHHHHHHHHhccccc
Confidence 466778888888888887777665 666655 7888999999999999999999999999998744
No 72
>PHA03162 hypothetical protein; Provisional
Probab=69.38 E-value=7.3 Score=38.19 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC
Q 035544 261 ADLNSKISFFMAENASLKQQLSGSNAM 287 (727)
Q Consensus 261 qeLr~qls~LqaEN~~LRqQL~~~~a~ 287 (727)
++|..++++|+.||..||++|..+..+
T Consensus 16 EeLaaeL~kLqmENK~LKkkl~~~~~~ 42 (135)
T PHA03162 16 EDLAAEIAKLQLENKALKKKIKEGTDD 42 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 456667778899999999999876655
No 73
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=69.35 E-value=43 Score=31.95 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=22.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 226 ARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFF 270 (727)
Q Consensus 226 RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~L 270 (727)
.|-+..|+.......++..-++.|+..++.|+.++..+++++..+
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~ 92 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASA 92 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555444444444433
No 74
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=69.34 E-value=9.6 Score=33.25 Aligned_cols=18 Identities=22% Similarity=0.145 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 035544 264 NSKISFFMAENASLKQQL 281 (727)
Q Consensus 264 r~qls~LqaEN~~LRqQL 281 (727)
-.....|+.||..||+++
T Consensus 13 i~~~~~L~~EN~~Lr~q~ 30 (65)
T TIGR02449 13 LEYLERLKSENRLLRAQE 30 (65)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444443
No 75
>PF15556 Zwint: ZW10 interactor
Probab=69.17 E-value=42 Score=35.50 Aligned_cols=54 Identities=13% Similarity=0.191 Sum_probs=23.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 228 LMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 228 llRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
++|+|.|..+-......++..|.+...++...-..-+.++..|..|...|++|.
T Consensus 118 ~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa 171 (252)
T PF15556_consen 118 MEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQA 171 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443333333344444444443333333333444445555555555543
No 76
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=68.48 E-value=21 Score=42.76 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 249 LEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 249 LE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
|.++.++||.|..+|+.++...+++++.|.+++.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~ 576 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQ 576 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555443
No 77
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=68.28 E-value=12 Score=34.69 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQ 279 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRq 279 (727)
..+|+++++.++++|++|+.+...|+.|...|+.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4566666666777777776666666666666655
No 78
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=68.25 E-value=35 Score=35.41 Aligned_cols=59 Identities=19% Similarity=0.267 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 219 EEEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQ 280 (727)
Q Consensus 219 EkEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQ 280 (727)
++-.+|+||.+..+.++-.-+-+ -|.+...+++..-.|+..|+...+.|+.||++||..
T Consensus 19 eel~~rLR~~E~ek~~~m~~~g~---lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdL 77 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSLMVEHGR---LMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDL 77 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457777777777777655443 345555566666666677777777777777777664
No 79
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=67.86 E-value=12 Score=35.89 Aligned_cols=37 Identities=19% Similarity=0.393 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
.+.+||+++-.|-+|...|++++..|..||..||-..
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lEN 45 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLEN 45 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhH
Confidence 4577888888777777777777766655555554433
No 80
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=67.70 E-value=27 Score=35.61 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 234 SAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAE 273 (727)
Q Consensus 234 SAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaE 273 (727)
..++-=++|++++++-+.+.+.++.+..+|+.++...++|
T Consensus 136 ~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~e 175 (176)
T PF12999_consen 136 IYKEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAKQE 175 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344444577888887777777777777777777666554
No 81
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=67.13 E-value=46 Score=33.94 Aligned_cols=6 Identities=50% Similarity=0.750 Sum_probs=2.2
Q ss_pred HHHHHh
Q 035544 277 LKQQLS 282 (727)
Q Consensus 277 LRqQL~ 282 (727)
|..++.
T Consensus 138 l~~~l~ 143 (302)
T PF10186_consen 138 LQSQLA 143 (302)
T ss_pred HHHHHH
Confidence 333333
No 82
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=66.87 E-value=14 Score=38.72 Aligned_cols=45 Identities=18% Similarity=0.356 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 240 QRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 240 qRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
++|+..++.++.++..|+.+.+.+..+...|.+|++.|+.|+...
T Consensus 168 ~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 168 EKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcc
Confidence 456777888899999999999999999999999999999999763
No 83
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=66.83 E-value=17 Score=30.39 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 254 RNMHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 254 k~LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
..+..+.++|+.+++.++.||..|++++...
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555555555554
No 84
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=66.63 E-value=55 Score=32.04 Aligned_cols=53 Identities=13% Similarity=0.245 Sum_probs=29.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 228 LMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQ 280 (727)
Q Consensus 228 llRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQ 280 (727)
+.......+..++++++.++.++..++.+.++..+|+..+..++.+...++++
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~ 166 (191)
T PF04156_consen 114 LKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQ 166 (191)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555666666777777777766666666664333333443333333
No 85
>smart00338 BRLZ basic region leucin zipper.
Probab=66.41 E-value=67 Score=26.76 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAE 273 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaE 273 (727)
+..|+.+...|..++..|+.++..|..+
T Consensus 35 ~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 35 VEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444
No 86
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=66.35 E-value=42 Score=33.65 Aligned_cols=55 Identities=15% Similarity=0.316 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 219 EEEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAE 273 (727)
Q Consensus 219 EkEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaE 273 (727)
++-.+..++|++.|..|+-.=+.|-....+|..+++..+....+++.+|..|...
T Consensus 80 ~~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~ 134 (152)
T PF11500_consen 80 EKAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQ 134 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667789999999988888888888888888776665555555555554443
No 87
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=66.15 E-value=33 Score=33.99 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 250 EDKVRNMHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 250 E~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
+++.+.+++|.++|+++++..+.|...||.|....
T Consensus 153 ~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677888888888888888899998887653
No 88
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=65.97 E-value=23 Score=38.83 Aligned_cols=51 Identities=25% Similarity=0.319 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 233 ESAQLSRQRKKHYVEELEDKV-------RNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 233 ESAqrSRqRKKqYVeeLE~KV-------k~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+.+|+-....+..+.++|..+ ..+...-..|++++.+|+.||.-|||||..
T Consensus 182 E~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLdd 239 (305)
T PF14915_consen 182 ESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDD 239 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555666665544 444555567899999999999999999975
No 89
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=65.60 E-value=9.4 Score=34.73 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 242 KKHYVEELEDKVRNMHSTIADLNSKISFFMA 272 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsENqeLr~qls~Lqa 272 (727)
|+.+++.|+.+++.++.+|..|..++..+++
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4666777777777777777777777776654
No 90
>PRK09039 hypothetical protein; Validated
Probab=64.96 E-value=41 Score=36.93 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 035544 264 NSKISFFMAENASLKQQLS 282 (727)
Q Consensus 264 r~qls~LqaEN~~LRqQL~ 282 (727)
+.++..|++|...||.||.
T Consensus 136 ~~~V~~L~~qI~aLr~Qla 154 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLA 154 (343)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 91
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=64.93 E-value=19 Score=41.57 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=18.0
Q ss_pred CCceEEEecceEEeeh---hhhhhhhhccc-ccc
Q 035544 484 NDKLVKIDGNLIIHSV---LASEKAMASHD-ASK 513 (727)
Q Consensus 484 n~k~vki~gnliihsv---laseka~a~~~-~~~ 513 (727)
|++...|+|-+||-|. |.||+|..+.. .++
T Consensus 255 N~~~~dl~gC~v~gsa~GDLSSER~~~R~~~lSC 288 (475)
T PRK13729 255 NSKTYDATGCFVGLEAWGDVSSERAIVRTRNISC 288 (475)
T ss_pred CCcccccCCcEEEEEEEeecccceeEEEEeeEEe
Confidence 5566677777766543 66777755443 355
No 92
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=64.88 E-value=72 Score=30.52 Aligned_cols=61 Identities=20% Similarity=0.261 Sum_probs=48.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 222 MKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 222 eKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
.-+.+-+.+-.+....||..=...-++|+..+..|+.++..+..++..|+++...++..|.
T Consensus 15 ~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 15 QNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777788887777777778888888998888888888888888888877764
No 93
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=64.56 E-value=39 Score=38.57 Aligned_cols=51 Identities=12% Similarity=0.245 Sum_probs=26.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 223 KRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAE 273 (727)
Q Consensus 223 KR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaE 273 (727)
++++-..++=++-.+.....+.....||.+++.++.++..+..++...+.+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~ 88 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADD 88 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 444444444444444444455555666666666666665555554443333
No 94
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=64.35 E-value=27 Score=32.66 Aligned_cols=44 Identities=20% Similarity=0.328 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 238 SRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 238 SRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
+++.=...++.|+++++.+..++++|+..+..+.+|...||.++
T Consensus 74 ~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 74 CQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444455777888888888888888888888888888887764
No 95
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=64.31 E-value=34 Score=30.92 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 242 KKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
=.+++..|...+..|-......+.....|..||..|.+-+..+-
T Consensus 21 Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 21 LIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456777777777777777777888888888888888877643
No 96
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=64.30 E-value=13 Score=36.45 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035544 254 RNMHSTIADLNSKISFFMAENASLKQQLSGSNAMP 288 (727)
Q Consensus 254 k~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~p 288 (727)
.+||.++..|++++++|..||..|+..+.....-+
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~ 111 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKY 111 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999998855443
No 97
>PRK04325 hypothetical protein; Provisional
Probab=64.28 E-value=48 Score=29.19 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
..+..+|.-++.|.....+.++++..|+.+.+.|..+|....
T Consensus 16 ~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 16 IQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778888888988888999999999999999999987754
No 98
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=64.11 E-value=21 Score=41.79 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 035544 242 KKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAM 287 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~ 287 (727)
-|..+..|+.++..|..|+++|.+-+..|+++|..|++.+...+..
T Consensus 421 ~~~e~s~l~~~~vt~~~q~~el~~~v~~l~~~n~~l~s~~~~~r~n 466 (669)
T KOG0818|consen 421 MKSELSDLRKQAVTLTKQVQELTEVVHALQASNAKLQSLMKVNREN 466 (669)
T ss_pred hhhhhhhHhhcchhhHHHHHHHHHHHHHHHhhhHHHHHHHhhcccc
Confidence 3667899999999999999999999999999999999999875533
No 99
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=63.79 E-value=6.6 Score=31.77 Aligned_cols=36 Identities=22% Similarity=0.411 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
.+|-.....+...+.+|..+++.|..||..||.++.
T Consensus 10 ~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 10 RELAKRNSALSIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp --------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 334344455556666677777777777777777653
No 100
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=63.69 E-value=47 Score=33.97 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 035544 232 RESAQLSRQRKKHYVEELEDKV 253 (727)
Q Consensus 232 RESAqrSRqRKKqYVeeLE~KV 253 (727)
..+-+..+.+.+.+.+.||.++
T Consensus 98 LL~lk~~~~~~~e~~k~le~~~ 119 (190)
T PF05266_consen 98 LLSLKDDQEKLLEERKKLEKKI 119 (190)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH
Confidence 3333443434444444443333
No 101
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=61.43 E-value=44 Score=41.60 Aligned_cols=64 Identities=19% Similarity=0.373 Sum_probs=47.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 035544 225 KARLMRNRESAQLSRQRKKHYVEEL-----------------EDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAM 287 (727)
Q Consensus 225 ~RRllRNRESAqrSRqRKKqYVeeL-----------------E~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~ 287 (727)
+|++.|-|..|+...+.|.+|.++| |++...|+.|...|++++..|+.+..-||..+.+.+..
T Consensus 282 qrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~ 361 (1243)
T KOG0971|consen 282 QRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSD 361 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4567778888888777777776665 34445566777778888888888888888888877544
Q ss_pred C
Q 035544 288 P 288 (727)
Q Consensus 288 p 288 (727)
.
T Consensus 362 ~ 362 (1243)
T KOG0971|consen 362 G 362 (1243)
T ss_pred C
Confidence 3
No 102
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=61.24 E-value=10 Score=36.46 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC
Q 035544 260 IADLNSKISFFMAENASLKQQLSGSNA 286 (727)
Q Consensus 260 NqeLr~qls~LqaEN~~LRqQL~~~~a 286 (727)
.++|..++++|+.||..||++|..+..
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~~ 31 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSVG 31 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 356777888899999999999998775
No 103
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=61.05 E-value=83 Score=28.64 Aligned_cols=60 Identities=18% Similarity=0.092 Sum_probs=46.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcc
Q 035544 225 KARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIAD-------LNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 225 ~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqe-------Lr~qls~LqaEN~~LRqQL~~~ 284 (727)
+.++...+..++..=..|+.-+..||+++..|+.|... +.+....|..|+..|+.++...
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks 71 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKS 71 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 45677777778888888888889999999888776654 5556667888888888887664
No 104
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=60.96 E-value=1e+02 Score=29.19 Aligned_cols=37 Identities=19% Similarity=0.358 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
...+.+-..|+.++..++.++..|..+|.-|-+||..
T Consensus 94 ~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 94 ASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555678888889999999999999999998864
No 105
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=60.90 E-value=93 Score=29.75 Aligned_cols=41 Identities=27% Similarity=0.323 Sum_probs=16.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 227 RLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKI 267 (727)
Q Consensus 227 RllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~ql 267 (727)
++...-+......+|=+..++++|.++..++.....|+.++
T Consensus 63 ~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~ 103 (151)
T PF11559_consen 63 RLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQL 103 (151)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444333333333333
No 106
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=60.49 E-value=40 Score=29.57 Aligned_cols=42 Identities=24% Similarity=0.486 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 242 KKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+...++.|+.+.+.++.+...|+.++..++.+...++..|..
T Consensus 60 ~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 60 KEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677788888888888888888888888888888888865
No 107
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=60.47 E-value=30 Score=33.40 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 239 RQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 239 RqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+..|..-+++|+.+++.|+.+...|+++...++.+...|++.|..
T Consensus 65 k~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 65 KVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788899999999988888999888898888888888876
No 108
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=60.33 E-value=29 Score=31.54 Aligned_cols=39 Identities=33% Similarity=0.376 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
+-++.||.|++..-..+.-|+-+++.|..+|..|.+...
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~ 42 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888877666666666666666666666655543
No 109
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=60.31 E-value=27 Score=29.92 Aligned_cols=32 Identities=19% Similarity=0.421 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASL 277 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~L 277 (727)
|++|+..|..|..+..+|...+..|+.+.+..
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~a 36 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAA 36 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555554444443333
No 110
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.21 E-value=36 Score=30.51 Aligned_cols=39 Identities=26% Similarity=0.214 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
++|.+||.++..-+..+.+|...+...+.....++.+|.
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr 46 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLR 46 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888887777777776666655555444444443
No 111
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=60.16 E-value=75 Score=27.31 Aligned_cols=32 Identities=9% Similarity=0.213 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 241 RKKHYVEELEDKVRNMHSTIADLNSKISFFMA 272 (727)
Q Consensus 241 RKKqYVeeLE~KVk~LEsENqeLr~qls~Lqa 272 (727)
.....++.++++.+.++.+|.+|+.++..|..
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44455666666777777777777776666654
No 112
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=60.14 E-value=61 Score=33.55 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhcccccccc
Q 035544 369 FLGLLFFILLFGGLVPLVDV 388 (727)
Q Consensus 369 llgllf~~~~fg~l~p~vn~ 388 (727)
+|.+++.-+=||.-+-+..-
T Consensus 154 vlea~~~E~~yg~~i~~~~~ 173 (251)
T PF11932_consen 154 VLEAYQIEMEYGRTIEVYQG 173 (251)
T ss_pred HHHHHHHHHHhCCceeEEEE
Confidence 46778888888877555443
No 113
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=60.11 E-value=31 Score=29.62 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 252 KVRNMHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 252 KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
....+..+.+.++++++.+++||..|+.++....
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445556666666666677777777766666543
No 114
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=59.93 E-value=20 Score=38.85 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAM 287 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~ 287 (727)
+|+=.||.+.+.+..|...|+.|++.|+..|..||+||...+..
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~ 107 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREI 107 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888999999999999999999999999999999875433
No 115
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=59.79 E-value=27 Score=32.38 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 252 KVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 252 KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
..+.++.++.+|++++.+|+.||.-||.-+.-
T Consensus 72 ~~~~~~~ei~~L~~el~~L~~E~diLKKa~~~ 103 (121)
T PRK09413 72 ELAAAMKQIKELQRLLGKKTMENELLKEAVEY 103 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35568889999999999999999999988744
No 116
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=59.63 E-value=40 Score=31.24 Aligned_cols=42 Identities=21% Similarity=0.396 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 242 KKHYVEELEDKVRNM--HSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 242 KKqYVeeLE~KVk~L--EsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
...+++.||.+++.| ..+..+|+-+++.++-+...|..+|..
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~ 90 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQG 90 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 455667777777766 566666666666666666666666543
No 117
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=59.51 E-value=97 Score=35.44 Aligned_cols=34 Identities=26% Similarity=0.238 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 249 LEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 249 LE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
||+| ..|+.|-..|.++++..+.|...|+.++..
T Consensus 348 LEEK-aaLrkerd~L~keLeekkreleql~~q~~v 381 (442)
T PF06637_consen 348 LEEK-AALRKERDSLAKELEEKKRELEQLKMQLAV 381 (442)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444 446666667777777777788888877765
No 118
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=59.42 E-value=30 Score=28.06 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
+-|-.....|..++..|..+.+.|++|...|+..|.
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445566777777788888888888888888877764
No 119
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=58.54 E-value=25 Score=39.20 Aligned_cols=39 Identities=10% Similarity=0.104 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 035544 249 LEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAM 287 (727)
Q Consensus 249 LE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~ 287 (727)
|+.+++.|+.++..|+.++..++.|...|+.+|......
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSV 65 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 445555555555666666666666666666666665433
No 120
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=58.20 E-value=70 Score=34.37 Aligned_cols=59 Identities=14% Similarity=0.201 Sum_probs=40.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 035544 228 LMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNA 286 (727)
Q Consensus 228 llRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a 286 (727)
.++-.++-.+--.+++..++++..+++.|+.+|.+|.+.+..|.-|...|+.++..+..
T Consensus 147 ~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 147 LQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 44445555555566666666666777777777777777777777788888887776543
No 121
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=58.10 E-value=39 Score=31.19 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 248 ELEDKVRNMHSTIADLNSKISFFMAENA 275 (727)
Q Consensus 248 eLE~KVk~LEsENqeLr~qls~LqaEN~ 275 (727)
+|+.++..|..||.+|+.++...+.|-.
T Consensus 53 ~L~~e~~~l~~E~e~L~~~l~~e~~Ek~ 80 (87)
T PF12709_consen 53 ELENENKALKRENEQLKKKLDTEREEKQ 80 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334433333333333
No 122
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=57.89 E-value=94 Score=28.29 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 218 GEEEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENA 275 (727)
Q Consensus 218 eEkEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~ 275 (727)
-+.-.+++.+.+.+=++|-..|.-+..-..+||.+++.|......|-+++.+..++..
T Consensus 6 le~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~ 63 (89)
T PF13747_consen 6 LEAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARAN 63 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHH
Confidence 3455677777777777777777777777788888888877777777666665544433
No 123
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=57.89 E-value=24 Score=37.79 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccC
Q 035544 242 KKHYVEELEDKVRNMHSTIAD---LNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsENqe---Lr~qls~LqaEN~~LRqQL~~~~ 285 (727)
+-.+.++|+.+.+.|++++.+ +..+++.|++||++||..|....
T Consensus 64 ~~~~~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~~ 110 (284)
T COG1792 64 FLKSLKDLALENEELKKELAELEQLLEEVESLEEENKRLKELLDFKE 110 (284)
T ss_pred HHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 334445555555555555544 45677789999999999998744
No 124
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=57.89 E-value=17 Score=31.42 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 035544 245 YVEELEDKVRNMHSTIADLNS 265 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~ 265 (727)
.|.+|+.++.+|+.||.-|+.
T Consensus 22 ~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 22 QIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444443
No 125
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=57.72 E-value=22 Score=37.41 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
-+-+|..++..|+.|+.+|+.+++.++-+...|+++...
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999888766
No 126
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=57.45 E-value=81 Score=34.14 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 242 KKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
+|+-+.+|+.+++.++.+++++..+...+++|.+.+...+.
T Consensus 228 ~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 228 KKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555444443
No 127
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=56.78 E-value=36 Score=34.97 Aligned_cols=51 Identities=24% Similarity=0.364 Sum_probs=41.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 228 LMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLK 278 (727)
Q Consensus 228 llRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LR 278 (727)
++|-|.++..-|+|-+.+..+||.+=+.|.....-.+++|..|+..|..+=
T Consensus 118 i~rer~~~~~E~~ka~~la~qLe~ke~el~~~d~fykeql~~le~k~~e~y 168 (187)
T PF05300_consen 118 ILRERASTEQERQKAKQLARQLEEKEAELKKQDAFYKEQLARLEEKNAEFY 168 (187)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556677888889999999999999999999999999998887764
No 128
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=56.75 E-value=29 Score=33.32 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.+.+..|-+++..|.+....|-++...|+-||..||.+|..
T Consensus 14 e~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 14 EEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 45677888888999999999999999999999999999987
No 129
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.68 E-value=36 Score=30.64 Aligned_cols=11 Identities=45% Similarity=0.616 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q 035544 246 VEELEDKVRNM 256 (727)
Q Consensus 246 VeeLE~KVk~L 256 (727)
++.||.|+++-
T Consensus 6 ~ekLE~KiqqA 16 (79)
T COG3074 6 FEKLEAKVQQA 16 (79)
T ss_pred HHHHHHHHHHH
Confidence 44555555443
No 130
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=56.32 E-value=49 Score=28.38 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQ 280 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQ 280 (727)
|..|-.+|.+|..+...|+..+.....|-.+-.++
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~R 46 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADVQAAKEEAARANQR 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555444443333333
No 131
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=56.30 E-value=32 Score=32.15 Aligned_cols=42 Identities=21% Similarity=0.247 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAM 287 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~ 287 (727)
..+|..+++..+.|-.-|++.+..|..+|..|..+|.+....
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~ 44 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSK 44 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357788888888999999999999999999999999985543
No 132
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=56.06 E-value=56 Score=38.37 Aligned_cols=18 Identities=28% Similarity=0.167 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhccC
Q 035544 268 SFFMAENASLKQQLSGSN 285 (727)
Q Consensus 268 s~LqaEN~~LRqQL~~~~ 285 (727)
.+..+-+..|.||+.+.+
T Consensus 569 hqAVsVIlsLEQQVRERN 586 (632)
T KOG3910|consen 569 HQAVSVILSLEQQVRERN 586 (632)
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 334455667777777644
No 133
>PHA03155 hypothetical protein; Provisional
Probab=55.72 E-value=15 Score=35.27 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 261 ADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 261 qeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
.+|..+++.|+.||..||++|..+.
T Consensus 11 EeLaaeL~kL~~ENK~LKkkl~~~~ 35 (115)
T PHA03155 11 EELEKELQKLKIENKALKKKLLQHG 35 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4566677778888888888887766
No 134
>PRK12704 phosphodiesterase; Provisional
Probab=54.73 E-value=86 Score=36.48 Aligned_cols=13 Identities=31% Similarity=0.562 Sum_probs=9.1
Q ss_pred EEEEeCCcccCCC
Q 035544 673 VSVLVDPRETGDG 685 (727)
Q Consensus 673 vsvl~dpre~gd~ 685 (727)
|-|+|+|-...|.
T Consensus 470 irv~v~~~~v~d~ 482 (520)
T PRK12704 470 IRVIVKPDKVDDL 482 (520)
T ss_pred EEEEeCCCcCChH
Confidence 5677888776664
No 135
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=54.58 E-value=1.1e+02 Score=29.12 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=36.9
Q ss_pred HHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 228 LMRNRESAQLSRQRKKH-YVEELEDKVRNMHSTIADLNSKISFFMAENASLKQ 279 (727)
Q Consensus 228 llRNRESAqrSRqRKKq-YVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRq 279 (727)
-++.+.++-+...|.|+ -+..+|+++..|.-.|++|.++++.|+.|.....+
T Consensus 23 eEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~~ 75 (102)
T PF10205_consen 23 EEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESEQ 75 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445555555555554 67888888888888888888888888888774433
No 136
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=54.46 E-value=1.1e+02 Score=31.48 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
+..||.+-..+-..|-++...+..|++|+..||++....
T Consensus 177 L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 177 LRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888888888999998888887653
No 137
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=54.36 E-value=52 Score=30.72 Aligned_cols=39 Identities=13% Similarity=0.321 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
++.++.|+++.+.|+++.++|+..+..|.........+|
T Consensus 79 ~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~~~~ 117 (118)
T cd04776 79 EKMLEKIEKRRAELEQQRRDIDAALAELDAAEERCRERL 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566777777777777777777777766666655554
No 138
>PRK11546 zraP zinc resistance protein; Provisional
Probab=53.51 E-value=61 Score=32.21 Aligned_cols=31 Identities=23% Similarity=0.134 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 035544 220 EEMKRKARLMRNRESAQLSRQRKKHYVEELE 250 (727)
Q Consensus 220 kEeKR~RRllRNRESAqrSRqRKKqYVeeLE 250 (727)
.|.......+.+.-.++-...|.+.|....|
T Consensus 46 ~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~E 76 (143)
T PRK11546 46 TEQQAAWQKIHNDFYAQTSALRQQLVSKRYE 76 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555677777777777777777766554
No 139
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=53.50 E-value=26 Score=40.49 Aligned_cols=38 Identities=13% Similarity=0.326 Sum_probs=27.3
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 247 EELEDKVR-NMHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 247 eeLE~KVk-~LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
..+..+++ .++.+.++|.++.++|+.|.+.|+.+|..+
T Consensus 97 ~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 97 QSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554 356677778888888888888887777664
No 140
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=53.36 E-value=69 Score=30.41 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=26.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 227 RLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISF 269 (727)
Q Consensus 227 RllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~ 269 (727)
.+..++.++..-|..=+..+.+++.++..|..+|.-|..+|+.
T Consensus 88 ~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 88 ELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555555555566666666666666666666666666654
No 141
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=53.27 E-value=39 Score=30.95 Aligned_cols=41 Identities=7% Similarity=0.256 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
.++.|..-+..|++.|..|..++..|.+.|++.|.++++..
T Consensus 34 ~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~ 74 (83)
T PF03670_consen 34 MLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQL 74 (83)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56778888888999999999999999999999999987743
No 142
>smart00340 HALZ homeobox associated leucin zipper.
Probab=53.26 E-value=21 Score=29.30 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035544 257 HSTIADLNSKISFFMAENASLKQQLSGSNAMP 288 (727)
Q Consensus 257 EsENqeLr~qls~LqaEN~~LRqQL~~~~a~p 288 (727)
|.+..-|++-.+.|..||++|+..|+++++.-
T Consensus 4 EvdCe~LKrcce~LteeNrRL~ke~~eLralk 35 (44)
T smart00340 4 EVDCELLKRCCESLTEENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455677888888888888888888877664
No 143
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=53.17 E-value=80 Score=34.48 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=25.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 225 KARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKI 267 (727)
Q Consensus 225 ~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~ql 267 (727)
+.+.+.-|+--..+..--.+|-.+||.++.+++..|..|..+.
T Consensus 26 kq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~n 68 (333)
T KOG1853|consen 26 KQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRN 68 (333)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666666555554444333
No 144
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=52.92 E-value=53 Score=34.61 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=48.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 227 RLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 227 RllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
.++.-|.+|+.-.+|+++.+..|..-++.--+|-.+.+.+++.|..++..|.++.
T Consensus 16 ELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~~~~~l~~~~ 70 (214)
T PF07795_consen 16 ELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLLLEKLSLQQQQ 70 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 5788899999999999999999999999888999999999999998877666544
No 145
>PLN02320 seryl-tRNA synthetase
Probab=52.87 E-value=53 Score=38.29 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=27.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 227 RLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 227 RllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
|.+||..|.+-..++++...++|-++++.|.++...|.+++..++++...+-..|
T Consensus 113 r~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 113 RAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555666655544333333445555555555555555555555555444444333
No 146
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=52.78 E-value=31 Score=31.07 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 255 NMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 255 ~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
.|..++..|+.+...|..||..|++++.
T Consensus 72 ~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 72 LLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556777788888888888888888875
No 147
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=52.59 E-value=65 Score=31.96 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKISFFMAE 273 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~qls~LqaE 273 (727)
++.+++|+.+++..+.+...|++|.+.|+.|
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445555555555555555555555444
No 148
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=52.55 E-value=89 Score=34.80 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 035544 220 EEMKRKARLMRNRESAQLSRQRKKHYV 246 (727)
Q Consensus 220 kEeKR~RRllRNRESAqrSRqRKKqYV 246 (727)
...++.|+++++|++....=+||-..+
T Consensus 119 ~~~~e~r~~lk~RI~rSEAFKRKllE~ 145 (323)
T PF08537_consen 119 KSGREERRLLKDRILRSEAFKRKLLEK 145 (323)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666789999999888777775443
No 149
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=52.40 E-value=1.5e+02 Score=27.91 Aligned_cols=59 Identities=19% Similarity=0.209 Sum_probs=28.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 222 MKRKARLMRNRESAQLSRQRKKHY--------VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQ 280 (727)
Q Consensus 222 eKR~RRllRNRESAqrSRqRKKqY--------VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQ 280 (727)
..+.+|++-.+.++-..--..-.| +..|..+++.++++++.|..+...|++|+..|+..
T Consensus 20 ~~~~~~~l~~~l~~~l~~f~~~~~~g~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 20 RVRRRRILTLVLLALLALFQYLAWFGKNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344455555565555443332222 23344444455555555555555555555555544
No 150
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=52.03 E-value=1.1e+02 Score=33.37 Aligned_cols=12 Identities=17% Similarity=0.111 Sum_probs=5.1
Q ss_pred HHHHHHHHHHhc
Q 035544 272 AENASLKQQLSG 283 (727)
Q Consensus 272 aEN~~LRqQL~~ 283 (727)
++...++++|..
T Consensus 120 ~q~~~~~~~L~~ 131 (314)
T PF04111_consen 120 NQYEYASNQLDR 131 (314)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 333344444444
No 151
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=52.03 E-value=23 Score=34.21 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 242 KKHYVEELEDKVRNMHSTIADLNSKISF 269 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsENqeLr~qls~ 269 (727)
|..-+++|+.++..|+-||..|++++.+
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456899999999999999999998865
No 152
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=52.00 E-value=22 Score=40.40 Aligned_cols=38 Identities=24% Similarity=0.305 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
..++|.+-+.|+..|++|..+++.|+.++..+..++..
T Consensus 292 ~~E~~~rqk~le~~n~~L~~rieeLk~~~~~~~~~~~~ 329 (411)
T KOG1318|consen 292 ARELENRQKKLESTNQELALRIEELKSEAGRHGLQVEP 329 (411)
T ss_pred HHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 44445555555555555555555555555544444433
No 153
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=51.91 E-value=75 Score=37.88 Aligned_cols=44 Identities=23% Similarity=0.378 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhc
Q 035544 240 QRKKHYVEELEDKVRNMHSTIADLNSKIS----------FFMAENASLKQQLSG 283 (727)
Q Consensus 240 qRKKqYVeeLE~KVk~LEsENqeLr~qls----------~LqaEN~~LRqQL~~ 283 (727)
+.+++.+.+||.+++.++.+.....+.++ ...+.|+.||+||..
T Consensus 118 ~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~E 171 (617)
T PF15070_consen 118 QEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAE 171 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHH
Confidence 47788888888888777655443333332 234556666666665
No 154
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=51.69 E-value=1.5e+02 Score=27.23 Aligned_cols=32 Identities=19% Similarity=0.426 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 237 LSRQRKKHYVEELEDKVRNMHSTIADLNSKIS 268 (727)
Q Consensus 237 rSRqRKKqYVeeLE~KVk~LEsENqeLr~qls 268 (727)
+.+..|..-|..|..++..|..++..|..++.
T Consensus 74 k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 74 KKKEEKEAEIKKLKAELEELKSEISKLEEKLE 105 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 155
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=50.99 E-value=33 Score=39.84 Aligned_cols=44 Identities=20% Similarity=0.199 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAMPP 289 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~pp 289 (727)
+.+|..++..|.++|.+|.+.+...+.|...|+++|.+....|.
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p~~ 46 (512)
T TIGR03689 3 LRELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQPPS 46 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 45688889999999999999999999999999999999876553
No 156
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=50.93 E-value=30 Score=39.99 Aligned_cols=50 Identities=18% Similarity=0.307 Sum_probs=38.0
Q ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 234 SAQLSRQRK------KHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 234 SAqrSRqRK------KqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.++..|.|| ++--+.|+..-++|+++.++|+.++.+++.....|..||..
T Consensus 86 ~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 86 KAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555 23335566666788899999999999999999999999965
No 157
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=50.29 E-value=9.2 Score=34.97 Aligned_cols=39 Identities=18% Similarity=0.397 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
.||+.|...+..|..+|..|+.++..|+.++..++....
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~ 63 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEE 63 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 577778888888887777777777776666555554433
No 158
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=50.21 E-value=1.3e+02 Score=30.80 Aligned_cols=46 Identities=24% Similarity=0.355 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhc
Q 035544 238 SRQRKKHYVEELEDKVRNMHSTIADLNS-------KISFFMAENASLKQQLSG 283 (727)
Q Consensus 238 SRqRKKqYVeeLE~KVk~LEsENqeLr~-------qls~LqaEN~~LRqQL~~ 283 (727)
.+.++...+.+||.++..|+.+.+.+.. .+..|+.+...|.+.+..
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~ 177 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIEN 177 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666677776666665444443 334444444444554443
No 159
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=50.05 E-value=30 Score=37.26 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAM 287 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~ 287 (727)
++|+.++++|++++.+++.++..++.|...|+++|.+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (364)
T TIGR01242 2 SELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSP 42 (364)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34555566666666666666666667777777777665544
No 160
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=49.65 E-value=29 Score=29.59 Aligned_cols=34 Identities=6% Similarity=0.156 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMAENASLK 278 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LR 278 (727)
.+..|+..+..++.||++|+..++.+..-.+.|-
T Consensus 8 ~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll 41 (55)
T PF05377_consen 8 ELPRIESSINTVKKENEEISESVEKIEENVKDLL 41 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777777777766555543
No 161
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=49.55 E-value=1.7e+02 Score=30.52 Aligned_cols=36 Identities=6% Similarity=0.168 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
.....++..|+.+...++.++..|+...+.|..+..
T Consensus 150 ~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 150 QQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333344455555556666666666666666655544
No 162
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=49.43 E-value=1.5e+02 Score=30.19 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 035544 243 KHYVEELEDKVRNMHSTIADL 263 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeL 263 (727)
+..+.+|+.+...|+.+...|
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l 146 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQEL 146 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433333
No 163
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=49.20 E-value=57 Score=30.13 Aligned_cols=34 Identities=32% Similarity=0.449 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 242 KKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
||-|-...|.++..|+ .++..|..||..|+.+|.
T Consensus 40 KksYe~rwek~v~~L~-------~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 40 KKSYEARWEKKVDELE-------NENKALKRENEQLKKKLD 73 (87)
T ss_pred HhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 4444444444444444 444555555555555443
No 164
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=48.79 E-value=72 Score=34.46 Aligned_cols=47 Identities=15% Similarity=0.299 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 237 LSRQRKKHYVEELEDKVR-NMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 237 rSRqRKKqYVeeLE~KVk-~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
|-.+||++--.+|..+.+ .+-.|..+|++++++|+.|...|++.+.+
T Consensus 199 RL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~~e~~r 246 (289)
T COG4985 199 RLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDALRAELER 246 (289)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 334455555555555543 46678888999999999999999988876
No 165
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=48.69 E-value=66 Score=29.26 Aligned_cols=43 Identities=14% Similarity=0.239 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 241 RKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 241 RKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
-+..-+..|+.+++.++.+...|..++..++.+...|+..|..
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567788888888888888888888888888888887764
No 166
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=48.66 E-value=51 Score=32.13 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 035544 258 STIADLNSKISFFMAENASLKQQ 280 (727)
Q Consensus 258 sENqeLr~qls~LqaEN~~LRqQ 280 (727)
.++..|+.++..|+.+...|..+
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~~ 57 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEEQ 57 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 167
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=48.45 E-value=2.1e+02 Score=27.14 Aligned_cols=66 Identities=18% Similarity=0.182 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 219 EEEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 219 EkEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
+....-..+++.-..++.-+=.|-+..++--+.+++.++..+.++...+..+..++..||.+|...
T Consensus 42 e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~a 107 (139)
T PF05615_consen 42 EESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEA 107 (139)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556777777777777777777788888888899999999999999988898888888663
No 168
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=48.14 E-value=1.8e+02 Score=29.24 Aligned_cols=49 Identities=10% Similarity=0.198 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 235 AQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 235 AqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.+..+...+..+.+|+..++.++..++.|+.++..|+.++..|..++..
T Consensus 121 l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~ 169 (194)
T PF08614_consen 121 LEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRK 169 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556677777777777777777777777777777777666554
No 169
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=48.01 E-value=40 Score=30.44 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035544 253 VRNMHSTIADLNSKISFFMAENASLKQQLSGSNAMP 288 (727)
Q Consensus 253 Vk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~p 288 (727)
+..|.+||.+|++++..|++|.+.++...+-....|
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~~qIk~diP 37 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKREFQIKEDIP 37 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCc
Confidence 346788999999999999999988888766666554
No 170
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=47.81 E-value=25 Score=35.52 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=2.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035544 263 LNSKISFFMAENASLKQQL 281 (727)
Q Consensus 263 Lr~qls~LqaEN~~LRqQL 281 (727)
|+.+++.|+.|.+.||+.|
T Consensus 29 L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 29 LREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555544
No 171
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=47.61 E-value=1.1e+02 Score=35.27 Aligned_cols=29 Identities=17% Similarity=0.093 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 242 KKHYVEELEDKVRNMHSTIADLNSKISFF 270 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsENqeLr~qls~L 270 (727)
=++++.++|..++.|+.||.+|.++..+.
T Consensus 46 i~a~~~~~E~~l~~Lq~e~~~l~e~~v~~ 74 (459)
T KOG0288|consen 46 IKAKLQEKELELNRLQEENTQLNEERVRE 74 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888889999999998887665443
No 172
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=47.51 E-value=46 Score=30.61 Aligned_cols=37 Identities=24% Similarity=0.382 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhccC
Q 035544 249 LEDKVRNMHSTIADLNSKIS------FFMAENASLKQQLSGSN 285 (727)
Q Consensus 249 LE~KVk~LEsENqeLr~qls------~LqaEN~~LRqQL~~~~ 285 (727)
|++..+.|..|++.|+.++. ....||..|+.++....
T Consensus 22 ~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~ 64 (86)
T PF12711_consen 22 LEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQ 64 (86)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444666777777765443 56778888888876644
No 173
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=47.25 E-value=1.6e+02 Score=29.97 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 035544 262 DLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 262 eLr~qls~LqaEN~~LRqQL~~ 283 (727)
.|.+++..|+.++..|+.+|..
T Consensus 107 ~~l~~l~~l~~~~~~l~~el~~ 128 (188)
T PF03962_consen 107 ELLEELEELKKELKELKKELEK 128 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555543
No 174
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=47.15 E-value=38 Score=36.57 Aligned_cols=42 Identities=14% Similarity=0.299 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
+.-++.||.++..|++||.+|+.+++.+++++....+.+...
T Consensus 31 ~~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~ 72 (308)
T PF11382_consen 31 PNLIDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAV 72 (308)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445688999999999999999999999999998888887763
No 175
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=47.14 E-value=36 Score=29.46 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccC
Q 035544 244 HYVEELEDKVRNMHSTIAD----LNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqe----Lr~qls~LqaEN~~LRqQL~~~~ 285 (727)
..|..||.-+..|++|... |..+|+.|+.+|..|.-+|....
T Consensus 3 ~qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~~kL~m~~ 48 (60)
T PF14916_consen 3 QQVQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNKDLTFKLIMKQ 48 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeecC
Confidence 4567788888888776544 56677777777777776666543
No 176
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=47.05 E-value=44 Score=30.10 Aligned_cols=30 Identities=13% Similarity=0.320 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 254 RNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 254 k~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
..|..+...|..++..++.+...+..++..
T Consensus 70 ~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 70 EELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555544
No 177
>PRK00106 hypothetical protein; Provisional
Probab=47.04 E-value=1.3e+02 Score=35.36 Aligned_cols=15 Identities=33% Similarity=0.355 Sum_probs=9.7
Q ss_pred ecceEEeehhhhhhh
Q 035544 491 DGNLIIHSVLASEKA 505 (727)
Q Consensus 491 ~gnliihsvlaseka 505 (727)
+.||+-|||-...-|
T Consensus 348 ~qnl~~HSv~VA~lA 362 (535)
T PRK00106 348 GQNVLRHSVEVGKLA 362 (535)
T ss_pred CCcHHHHHHHHHHHH
Confidence 456888887655544
No 178
>PHA03155 hypothetical protein; Provisional
Probab=46.93 E-value=23 Score=34.07 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISF 269 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~ 269 (727)
-+++|+.++..|+-||..|++++.+
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4799999999999999999998854
No 179
>PHA03162 hypothetical protein; Provisional
Probab=46.84 E-value=14 Score=36.38 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 241 RKKHYVEELEDKVRNMHSTIADLNSKIS 268 (727)
Q Consensus 241 RKKqYVeeLE~KVk~LEsENqeLr~qls 268 (727)
+|+.-+++|+.++..|+-||..|++++.
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999999883
No 180
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=46.64 E-value=99 Score=29.98 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 234 SAQLSRQRKKHYVEELEDKVRNMHSTIADLNSK 266 (727)
Q Consensus 234 SAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~q 266 (727)
|-|.--+-=|+.|.+||+++..|++||.-|+.-
T Consensus 64 AVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 64 AVREEVEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555666778888888888888888877754
No 181
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=46.36 E-value=80 Score=26.98 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 259 TIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 259 ENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+...|..+...|+++|.+||..|.+
T Consensus 34 ~R~~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 34 DRAALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556778889999999999998864
No 182
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=46.23 E-value=5.1e+02 Score=29.71 Aligned_cols=15 Identities=33% Similarity=0.383 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhc
Q 035544 269 FFMAENASLKQQLSG 283 (727)
Q Consensus 269 ~LqaEN~~LRqQL~~ 283 (727)
.-+.|...|||.|..
T Consensus 273 lHq~Ei~~LKqeLa~ 287 (395)
T PF10267_consen 273 LHQNEIYNLKQELAS 287 (395)
T ss_pred HHHHHHHHHHHHHHh
Confidence 347788888888754
No 183
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=46.02 E-value=64 Score=36.10 Aligned_cols=37 Identities=11% Similarity=0.072 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQ 280 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQ 280 (727)
..++.|+.+.+.++.++.++++++..++.|+..|++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (398)
T PTZ00454 29 KELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSV 65 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4678899999999999999999999999999998765
No 184
>PLN02678 seryl-tRNA synthetase
Probab=45.79 E-value=89 Score=35.85 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=18.4
Q ss_pred CccCCCCcceeeee------ecC---CCCCceeecCcccccchh
Q 035544 590 PLLSSGMCTEVFQF------DAS---PAPGAIIPASSVANMTAE 624 (727)
Q Consensus 590 p~lssgmctevfqf------d~s---~~~g~ivpas~~~n~s~~ 624 (727)
|.----|||.-.-| ||= |+.+...=+||++|.+.=
T Consensus 322 pyrvv~~~sgdlg~~a~~~yDiE~W~P~~~~y~EvsS~Snc~D~ 365 (448)
T PLN02678 322 PYQVVSIVSGALNDAAAKKYDLEAWFPASKTYRELVSCSNCTDY 365 (448)
T ss_pred CeEEEeecccccCCchhhceeeEeeccccCCceEEeeecccccH
Confidence 54445556554333 331 444555556777776654
No 185
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=45.74 E-value=52 Score=38.12 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAEN 274 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN 274 (727)
++|.++|+.|+.+|..|.+|+.+|++-.
T Consensus 289 qeL~kkV~~Le~~N~sLl~qL~klQt~v 316 (472)
T KOG0709|consen 289 QELQKKVEELELSNRSLLAQLKKLQTLV 316 (472)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 4555555555555555555555555443
No 186
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=45.50 E-value=1.4e+02 Score=34.64 Aligned_cols=14 Identities=29% Similarity=0.660 Sum_probs=10.3
Q ss_pred EEEEeCCcccCCCC
Q 035544 673 VSVLVDPRETGDGD 686 (727)
Q Consensus 673 vsvl~dpre~gd~d 686 (727)
|-|+|+|-...|.+
T Consensus 464 irv~v~~~~v~d~~ 477 (514)
T TIGR03319 464 IRVMVKPEKISDDQ 477 (514)
T ss_pred EEEEecCCcCChHH
Confidence 67888888877743
No 187
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=45.41 E-value=55 Score=36.04 Aligned_cols=40 Identities=25% Similarity=0.379 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNA 286 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a 286 (727)
.+|+.++++|+.++.+|..++..++.+...|+.++.....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 11 SELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3456666666666667776667777777777777765443
No 188
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=45.36 E-value=56 Score=27.58 Aligned_cols=32 Identities=3% Similarity=0.048 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 241 RKKHYVEELEDKVRNMHSTIADLNSKISFFMA 272 (727)
Q Consensus 241 RKKqYVeeLE~KVk~LEsENqeLr~qls~Lqa 272 (727)
+.+.--.....++..|+.||..|+.++..++.
T Consensus 19 ~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 19 ARSLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333455566777888888888888776653
No 189
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=45.20 E-value=23 Score=28.66 Aligned_cols=43 Identities=21% Similarity=0.238 Sum_probs=13.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 225 KARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKIS 268 (727)
Q Consensus 225 ~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls 268 (727)
+++..+||+=|+..-.. ...+.+||.++..|..||-.|+.++.
T Consensus 3 ~k~~~qn~~laK~Ns~l-~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 3 EKYSRQNRELAKRNSAL-SIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhHHH-HhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 45666677665543332 34578899999999999988887763
No 190
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=45.17 E-value=1e+02 Score=34.77 Aligned_cols=55 Identities=16% Similarity=0.328 Sum_probs=25.1
Q ss_pred HHHHhHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 227 RLMRNRESAQLSRQRKK-HY-VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 227 RllRNRESAqrSRqRKK-qY-VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
|.+||..|.+--..+|+ +. .++|-.+++.|.++..+|.+++..++++...+-..|
T Consensus 50 ~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 50 QAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45556665555332222 11 344444455555555555555444444444443333
No 191
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=44.62 E-value=1.5e+02 Score=29.04 Aligned_cols=36 Identities=14% Similarity=0.248 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
...+|.++..|+..|..|..++..++.....++..+
T Consensus 30 ~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 30 NEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555444444444444
No 192
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=44.49 E-value=2.2e+02 Score=27.65 Aligned_cols=54 Identities=19% Similarity=0.178 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035544 235 AQLSRQRKKHYVEELEDKVRNMH--------STIADLNSKISFFMAENASLKQQLSGSNAMP 288 (727)
Q Consensus 235 AqrSRqRKKqYVeeLE~KVk~LE--------sENqeLr~qls~LqaEN~~LRqQL~~~~a~p 288 (727)
+.......+..+..|+.....|. .+...|---+..+...+..+|.+|..+|...
T Consensus 53 ~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eV 114 (136)
T PF04871_consen 53 AEAELEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGEEV 114 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCc
Confidence 33333444444455554444433 3333344455566888999999999988654
No 193
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=44.09 E-value=84 Score=28.94 Aligned_cols=42 Identities=14% Similarity=0.279 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 242 KKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+..-+.+|+.+++.++.....|..+...|+.+...++++|..
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666666666666666666666666665543
No 194
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=43.89 E-value=1.3e+02 Score=33.36 Aligned_cols=42 Identities=12% Similarity=0.235 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAMP 288 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~p 288 (727)
.+...+.+.|+.|...|++++..++-++..||+++...+.+.
T Consensus 75 ~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~ 116 (319)
T PF09789_consen 75 SESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGD 116 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhh
Confidence 444556667777777888888888888999999998877665
No 195
>PF14282 FlxA: FlxA-like protein
Probab=43.86 E-value=68 Score=29.73 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 035544 261 ADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 261 qeLr~qls~LqaEN~~LRqQL~ 282 (727)
..|+.+|..|+++.+.|..+..
T Consensus 54 q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 54 QLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 196
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=43.75 E-value=1.5e+02 Score=34.20 Aligned_cols=51 Identities=16% Similarity=0.230 Sum_probs=37.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 228 LMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLK 278 (727)
Q Consensus 228 llRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LR 278 (727)
..+|-..|++--.|-.+.-.+|..+++.|-.+..+|..+...|.++-..|.
T Consensus 128 a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 128 ARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777888777777777788888888877777777777666666555554
No 197
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=43.74 E-value=28 Score=35.19 Aligned_cols=30 Identities=13% Similarity=0.242 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 253 VRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 253 Vk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.+.|..++|+|+.++..|..|. .+++++..
T Consensus 26 KE~L~~~~QRLkDE~RDLKqEl-~V~ek~~~ 55 (166)
T PF04880_consen 26 KENLREEVQRLKDELRDLKQEL-IVQEKLRK 55 (166)
T ss_dssp HHHHHHCH-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHhhh
Confidence 3457778888888888888888 77777654
No 198
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=43.65 E-value=76 Score=35.73 Aligned_cols=22 Identities=36% Similarity=0.311 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 035544 259 TIADLNSKISFFMAENASLKQQ 280 (727)
Q Consensus 259 ENqeLr~qls~LqaEN~~LRqQ 280 (727)
.+.+|+.++..|+-|.+.|.|.
T Consensus 202 yI~~LEsKVqDLm~EirnLLQl 223 (401)
T PF06785_consen 202 YIGKLESKVQDLMYEIRNLLQL 223 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666777777666553
No 199
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=43.33 E-value=82 Score=32.15 Aligned_cols=44 Identities=9% Similarity=0.171 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAM 287 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~ 287 (727)
+++..|+.+.+.|+.++..|+.+....+.+-..|...+...+..
T Consensus 111 ~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~rark~ 154 (170)
T PRK13923 111 EQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNRARRM 154 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 57788888888888888888888888888888888887765443
No 200
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=43.28 E-value=1.1e+02 Score=36.22 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 035544 250 EDKVRNMHSTIADLN 264 (727)
Q Consensus 250 E~KVk~LEsENqeLr 264 (727)
|.++..|..||..|+
T Consensus 168 e~e~~~Lk~en~rl~ 182 (546)
T KOG0977|consen 168 EDELKRLKAENSRLR 182 (546)
T ss_pred HHHHHHHHHHhhhhH
Confidence 333333333333333
No 201
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=43.18 E-value=1.7e+02 Score=25.93 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 259 TIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 259 ENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
++++|+.+..+|+.||..|+-++..
T Consensus 43 ~l~~l~~~~~~l~~e~~~L~lE~~~ 67 (97)
T PF04999_consen 43 ELQQLEKEIDQLQEENERLRLEIAT 67 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 202
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=43.09 E-value=1.3e+02 Score=33.27 Aligned_cols=59 Identities=22% Similarity=0.264 Sum_probs=48.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 227 RLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 227 RllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
+++--++.-.+.|+|=..-+.-=|.+|..|+.++...+.+++.|+.|+..+|..|....
T Consensus 71 ~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 71 SLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred hHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666667777777777777888889999999999999999999999999998743
No 203
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=43.04 E-value=1.6e+02 Score=35.11 Aligned_cols=42 Identities=29% Similarity=0.439 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 243 KHYVEELEDKVRNMH-------STIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 243 KqYVeeLE~KVk~LE-------sENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
+.|+..++.+.+.++ .|+.+-..+++.|+.+|..|+.++...
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555555444444 444444455556666666666666544
No 204
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=42.56 E-value=96 Score=33.78 Aligned_cols=65 Identities=14% Similarity=0.155 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 220 EEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 220 kEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
+..++..+..++-..|+..=+.++..+.+|+.++..|+.+......+...|+.+......+|...
T Consensus 218 P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA 282 (344)
T PF12777_consen 218 PKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERA 282 (344)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH
Confidence 34444455555556666666677788888888888888888887777777777777766666653
No 205
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=42.20 E-value=1.3e+02 Score=28.40 Aligned_cols=8 Identities=50% Similarity=0.530 Sum_probs=3.7
Q ss_pred hHHHHHHH
Q 035544 231 NRESAQLS 238 (727)
Q Consensus 231 NRESAqrS 238 (727)
-|++|+..
T Consensus 56 krE~A~E~ 63 (100)
T PF04568_consen 56 KREAAQEE 63 (100)
T ss_dssp HHHHHHHH
T ss_pred hHHHhhHH
Confidence 34555443
No 206
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=42.08 E-value=69 Score=34.43 Aligned_cols=28 Identities=14% Similarity=0.342 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 256 MHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 256 LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
|+.+..+++.++..|+.||..|...+..
T Consensus 161 le~e~ee~~erlk~le~E~s~LeE~~~~ 188 (290)
T COG4026 161 LEAEYEEVQERLKRLEVENSRLEEMLKK 188 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455555555555555554443
No 207
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=42.07 E-value=46 Score=32.42 Aligned_cols=41 Identities=24% Similarity=0.330 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 035544 246 VEELEDKVRNMHS--TIADLNSKISFFMAENASLKQQLSGSNA 286 (727)
Q Consensus 246 VeeLE~KVk~LEs--ENqeLr~qls~LqaEN~~LRqQL~~~~a 286 (727)
+..|+.++..|.+ .+.+|..++..|+.|+..|..+|.....
T Consensus 95 ~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 95 VKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444443 3456788999999999999999987543
No 208
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=42.03 E-value=1.9e+02 Score=33.26 Aligned_cols=26 Identities=15% Similarity=0.029 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCC
Q 035544 263 LNSKISFFMAENASLKQQLSGSNAMP 288 (727)
Q Consensus 263 Lr~qls~LqaEN~~LRqQL~~~~a~p 288 (727)
|......|...++.|+.++..++...
T Consensus 302 le~~n~~L~~rieeLk~~~~~~~~~~ 327 (411)
T KOG1318|consen 302 LESTNQELALRIEELKSEAGRHGLQV 327 (411)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 44555566666666666666666554
No 209
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=41.95 E-value=2.4e+02 Score=24.80 Aligned_cols=44 Identities=20% Similarity=0.375 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 240 QRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 240 qRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.+-..-|..|-.+++.++.++..|..++..+..+...|+..+..
T Consensus 29 l~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 29 LKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33445567777888888888888888888899999998888765
No 210
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=41.93 E-value=32 Score=35.55 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAM 287 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~ 287 (727)
.+||.....|..+...|..+...|+.|+..|+.++.....+
T Consensus 108 kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~ 148 (198)
T KOG0483|consen 108 KQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKRE 148 (198)
T ss_pred hhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 56889999999999999999999999999999999875444
No 211
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=41.91 E-value=2.2e+02 Score=31.74 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 260 IADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 260 NqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
++.|+.++.+|.+|++.|+.+|...
T Consensus 180 vN~L~Kqm~~l~~eKr~Lq~~l~~~ 204 (310)
T PF09755_consen 180 VNRLWKQMDKLEAEKRRLQEKLEQP 204 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4568999999999999999999873
No 212
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=41.88 E-value=66 Score=28.58 Aligned_cols=27 Identities=15% Similarity=0.335 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMA 272 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~Lqa 272 (727)
++.|+.+...|+.||.+|+-+++.|..
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 666666667777777666666666644
No 213
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=41.46 E-value=1.2e+02 Score=24.67 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 035544 261 ADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 261 qeLr~qls~LqaEN~~LRqQL~ 282 (727)
..|..++..|..+|..|++++.
T Consensus 28 ~~le~~~~~L~~en~~L~~~i~ 49 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEIA 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555543
No 214
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=41.38 E-value=1.9e+02 Score=34.39 Aligned_cols=16 Identities=19% Similarity=0.191 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 035544 266 KISFFMAENASLKQQL 281 (727)
Q Consensus 266 qls~LqaEN~~LRqQL 281 (727)
++..|+.++..|+++.
T Consensus 221 ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 221 RIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333343344343333
No 215
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=41.34 E-value=1.2e+02 Score=33.48 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKISFFMA 272 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~qls~Lqa 272 (727)
.-.++.||.+.++|+.+..+|.++|..|..
T Consensus 254 ~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 254 LGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777777766654
No 216
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=41.25 E-value=65 Score=27.78 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFF 270 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~L 270 (727)
+++|++++..|+.|+..++..+..-
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666665555443
No 217
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=40.79 E-value=2.3e+02 Score=27.36 Aligned_cols=21 Identities=24% Similarity=0.214 Sum_probs=8.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHH
Q 035544 229 MRNRESAQLSRQRKKHYVEEL 249 (727)
Q Consensus 229 lRNRESAqrSRqRKKqYVeeL 249 (727)
+..-+.|++.-.+|+..++.|
T Consensus 116 ~~~~~~~~~~l~~k~~~~~kl 136 (218)
T cd07596 116 LLTLQSLKKDLASKKAQLEKL 136 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444433333
No 218
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=40.74 E-value=1.2e+02 Score=27.51 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 035544 248 ELEDKVRNMHSTIADLNSKISFF 270 (727)
Q Consensus 248 eLE~KVk~LEsENqeLr~qls~L 270 (727)
..+.++..|++||+-|+.-|..|
T Consensus 41 ~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 41 EVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444433
No 219
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=40.72 E-value=70 Score=31.02 Aligned_cols=43 Identities=12% Similarity=0.126 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 237 LSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQ 279 (727)
Q Consensus 237 rSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRq 279 (727)
....-=++.++.||.+++.|+.+-..|++++..|+++...+-.
T Consensus 70 ~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 70 EAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334445567889999999999999999999999988766543
No 220
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=40.68 E-value=2.3e+02 Score=31.18 Aligned_cols=40 Identities=33% Similarity=0.430 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
+.-+++++.+++.++..++....+...++.+.+.+...+.
T Consensus 224 ~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 224 VKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335555555555555555555555544444444444443
No 221
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=40.32 E-value=83 Score=28.59 Aligned_cols=35 Identities=14% Similarity=0.332 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 248 ELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 248 eLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
.|+.++..|+.+...|...+..++.+...|+.+|.
T Consensus 91 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 91 FLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444443
No 222
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=39.92 E-value=60 Score=34.43 Aligned_cols=41 Identities=22% Similarity=0.226 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 035544 240 QRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAM 287 (727)
Q Consensus 240 qRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~ 287 (727)
.|.++||..|+.+.... ...++.|+.||..|+++|.++...
T Consensus 101 ~kA~~~i~~l~~~~~~~-------~~~~e~l~~e~~~l~~rl~ql~~~ 141 (232)
T KOG2483|consen 101 DKALEHIQSLERKSATQ-------QQDIEDLSRENRKLKARLEQLSLP 141 (232)
T ss_pred hhHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHhcCc
Confidence 45677887777776544 456677777888888888775543
No 223
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=39.86 E-value=2.5e+02 Score=33.51 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
++||+-+....+-..++-.-|...+.|++.||+++.+
T Consensus 136 ~el~~~L~~~~~i~~~mi~~i~~~~~Eir~Lr~~~~~ 172 (582)
T PF03276_consen 136 DELEDVLNFQGQILEQMIDDIGMQQREIRDLRETIQR 172 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555444444445555566667777777666655
No 224
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=39.74 E-value=2.8e+02 Score=27.21 Aligned_cols=48 Identities=15% Similarity=0.284 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 234 SAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 234 SAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
++....+...+.+.+|+.++++++.+.+.++.++..++++...|.+++
T Consensus 134 ~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (191)
T PF04156_consen 134 SLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKI 181 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455554444444444444444444444444443333
No 225
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=39.61 E-value=76 Score=35.04 Aligned_cols=43 Identities=28% Similarity=0.415 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 241 RKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 241 RKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
||.+-.....+++..|..+...|+.++.++..||..|.++|..
T Consensus 224 ~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ 266 (306)
T PF04849_consen 224 RKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQA 266 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5555556666666677777777788888888888888887765
No 226
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=39.59 E-value=1.3e+02 Score=29.80 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 035544 242 KKHYVEELEDKVRNMHS---TIADLNSKISFFMAENA 275 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEs---ENqeLr~qls~LqaEN~ 275 (727)
.+..|.+...+++.|+. .|.+|+.++..|+++|.
T Consensus 32 ~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 32 LKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 33344444444444443 44445555555554444
No 227
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=39.53 E-value=1.5e+02 Score=31.12 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
..-+.++|..++++..+|..+.+.|..||..||+....+
T Consensus 103 a~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl~L 141 (195)
T PF10226_consen 103 ASVMRQEVAQYQQKLKELEDKQEELIRENLELKELCLYL 141 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456677889999999999999999999999999986653
No 228
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.33 E-value=2.3e+02 Score=30.83 Aligned_cols=63 Identities=17% Similarity=0.296 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 221 EMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 221 EeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
......-+..+..-++.-=++....++++-.+...++.++.+++..+..|+.|...|++++..
T Consensus 36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 36 QDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666777777777777777777777777777777776666666554
No 229
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=39.29 E-value=52 Score=31.63 Aligned_cols=20 Identities=20% Similarity=0.508 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035544 244 HYVEELEDKVRNMHSTIADL 263 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeL 263 (727)
+.+++||.++.+|+.+++++
T Consensus 112 ~~l~~L~~~i~~L~~~~~~~ 131 (134)
T PF07047_consen 112 ERLEELEERIEELEEQVEKQ 131 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555444444433
No 230
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=39.22 E-value=2.8e+02 Score=34.75 Aligned_cols=10 Identities=10% Similarity=-0.127 Sum_probs=4.7
Q ss_pred CceEEEEcCC
Q 035544 411 RGRVLTINGY 420 (727)
Q Consensus 411 ~~rv~~v~~~ 420 (727)
+-++|-+..+
T Consensus 616 pKK~~k~e~~ 625 (1102)
T KOG1924|consen 616 PKKVYKPEVP 625 (1102)
T ss_pred ccccCCCCCc
Confidence 3445555444
No 231
>PF15556 Zwint: ZW10 interactor
Probab=39.05 E-value=2.3e+02 Score=30.34 Aligned_cols=58 Identities=14% Similarity=0.162 Sum_probs=51.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 228 LMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 228 llRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
..+.++|..+.|.-.|+|.-.-|..++.|..--++++++....+.|...|.+.|..+.
T Consensus 111 qaKKqva~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lk 168 (252)
T PF15556_consen 111 QAKKQVAMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLK 168 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999998743
No 232
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=39.04 E-value=1.5e+02 Score=33.47 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 255 NMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 255 ~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.|.++..+|++++..|+++...+.+++..
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555554
No 233
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=38.95 E-value=2.7e+02 Score=28.29 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 035544 263 LNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 263 Lr~qls~LqaEN~~LRqQL~ 282 (727)
...++..|..+|+.|+++|.
T Consensus 168 ~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 168 HQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34445555566666666654
No 234
>PHA02562 46 endonuclease subunit; Provisional
Probab=38.88 E-value=2e+02 Score=32.48 Aligned_cols=10 Identities=0% Similarity=0.119 Sum_probs=5.2
Q ss_pred CCCCccccch
Q 035544 356 SDGSKTKKVA 365 (727)
Q Consensus 356 ~~~~ktkkva 365 (727)
.+.+..++++
T Consensus 469 lS~Ge~~r~~ 478 (562)
T PHA02562 469 FSQGEKARID 478 (562)
T ss_pred cChhHHHHHH
Confidence 3445555555
No 235
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=38.75 E-value=84 Score=31.94 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 252 KVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 252 KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
++..+|.|++.|++-|...+..-..||.+|.
T Consensus 37 EL~KvEeEI~TLrqvL~aKer~~~eLKrkLG 67 (162)
T PF04201_consen 37 ELAKVEEEIQTLRQVLAAKERHCAELKRKLG 67 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHC
Confidence 4455556666666666666666666666654
No 236
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=38.49 E-value=68 Score=30.83 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFM 271 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~Lq 271 (727)
++++++++.|+.+..+|+.+++.++
T Consensus 108 ~~~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 108 EELQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666666666665544
No 237
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=38.42 E-value=94 Score=29.87 Aligned_cols=62 Identities=19% Similarity=0.184 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 035544 219 EEEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLN---SKISFFMAENASLKQQ 280 (727)
Q Consensus 219 EkEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr---~qls~LqaEN~~LRqQ 280 (727)
++=....||+..-..+.+.--.|=...-+.|..++-.|..+|.+++ .++..|+.+...|.++
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQR 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544444444444555555555555554432 2333444444444443
No 238
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=38.19 E-value=2.7e+02 Score=30.46 Aligned_cols=18 Identities=11% Similarity=0.512 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 035544 249 LEDKVRNMHSTIADLNSK 266 (727)
Q Consensus 249 LE~KVk~LEsENqeLr~q 266 (727)
+++++++.+++.++++.+
T Consensus 212 ~~EeL~~~Eke~~e~~~~ 229 (269)
T PF05278_consen 212 LEEELKQKEKEVKEIKER 229 (269)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 239
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=38.07 E-value=52 Score=32.20 Aligned_cols=36 Identities=31% Similarity=0.409 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQ 280 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQ 280 (727)
-+++||.+++.-..|+..|++++..+...|..|..+
T Consensus 95 ~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 95 VVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 356677777777778888888888888888877654
No 240
>PF04599 Pox_G5: Poxvirus G5 protein; InterPro: IPR007678 Protein G5 is found in a number of Poxviruses.
Probab=37.90 E-value=93 Score=35.78 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 232 RESAQLSRQRKKHYVEELEDKVRNMH 257 (727)
Q Consensus 232 RESAqrSRqRKKqYVeeLE~KVk~LE 257 (727)
|.|-+..-+||++.++.|+.....|.
T Consensus 87 r~a~k~~~~RK~~~i~~l~~~~~~ld 112 (425)
T PF04599_consen 87 RKALKNTIKRKREEIENLEDCIKNLD 112 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 77888888999999999988776443
No 241
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=37.89 E-value=1.2e+02 Score=26.06 Aligned_cols=34 Identities=15% Similarity=0.266 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASL 277 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~L 277 (727)
+.+..||..-..++.+...+..++..+..-+..+
T Consensus 20 ~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~ 53 (71)
T PF10779_consen 20 ERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWI 53 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555566666666665554444
No 242
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=37.82 E-value=1.6e+02 Score=29.43 Aligned_cols=20 Identities=20% Similarity=0.129 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035544 237 LSRQRKKHYVEELEDKVRNM 256 (727)
Q Consensus 237 rSRqRKKqYVeeLE~KVk~L 256 (727)
..=++|++|+++|+.+...|
T Consensus 15 ~rI~~K~~~LqEL~~Q~va~ 34 (142)
T PF08781_consen 15 ERIKKKKEQLQELILQQVAF 34 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33467888898888776655
No 243
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=37.77 E-value=11 Score=39.91 Aligned_cols=33 Identities=24% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMAENASL 277 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~LqaEN~~L 277 (727)
.|.+|...|..|..||+.|++.+.+|.+||..|
T Consensus 130 ~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 130 KIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777888889999999999999999888
No 244
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=37.76 E-value=2e+02 Score=32.38 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 252 KVRNMHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 252 KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
+++.+.....+|.++++.|.++...|+.+|...
T Consensus 376 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 376 QLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566677777888888888888888888775
No 245
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=37.75 E-value=62 Score=36.42 Aligned_cols=44 Identities=18% Similarity=0.319 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhc
Q 035544 240 QRKKHYVEELEDKVRNMHSTIADLNSKISFFMA-------ENASLKQQLSG 283 (727)
Q Consensus 240 qRKKqYVeeLE~KVk~LEsENqeLr~qls~Lqa-------EN~~LRqQL~~ 283 (727)
.|-|...+.||.-+..+++||++|+-++..+.. |++.|...|.+
T Consensus 123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 123 MKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 466777888999999999999998888877643 45666555544
No 246
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=37.67 E-value=2.4e+02 Score=29.89 Aligned_cols=125 Identities=16% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH------HHHHHHHhccCCCCCCCCCCCC-----
Q 035544 234 SAQLSRQRKKHYVEELEDKVRNMHSTIADLNSK------ISFFMAEN------ASLKQQLSGSNAMPPPLGMYPP----- 296 (727)
Q Consensus 234 SAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~q------ls~LqaEN------~~LRqQL~~~~a~pp~~g~~P~----- 296 (727)
.|+..|.|.++.+..|..++..|..+..+++.. +..|.+|. ..|...-..........+.++.
T Consensus 71 qa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~~Lp~l~eE~~~~~~~~~~~~~~~~~~p~~~~~~~P~~~~~~~ 150 (230)
T PF10146_consen 71 QAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLEPLPSLEEEELSKISPDYLQKVKSPWAPQASTTSLPSSLPSFS 150 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccccccCHHHhhcccccCCCcccCCCCCCcccccC
Q ss_pred -CCCCCCCCCCCCCCCCCCCccccCCCCCCCcccCCCCCccccccc--------------ccCC--CCCCCCCCCCCCCC
Q 035544 297 -PPHMAAAPMPYGWMPCAAPYMVKPQGSQVPLVPIPRLKPQAAAAA--------------VPSR--TKKSDGNKSKSDGS 359 (727)
Q Consensus 297 -pP~~~~apmP~p~~P~l~P~~~KpegSqVPLvPIP~lkpq~paa~--------------~~~~--~kkse~~~~~~~~~ 359 (727)
|++....+.-...+.-. .-.+++.......+-....-++|.++ .-|+ --||-|++.||.++
T Consensus 151 ~P~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Q~PPMK~C~sC~qqIHRNAPiCPlCK~KsRSrnpKk~k~ 228 (230)
T PF10146_consen 151 PPPPPSAMPPFMAALLQA--QQLQPGRHPSFESPSNSSFRQQPPPMKTCQSCHQQIHRNAPICPLCKAKSRSRNPKKPKR 228 (230)
T ss_pred CCCCccccccccchhhhh--hhccCCCCCCCCCCccccccccCCCcchhHhHHHHHhcCCCCCcccccccccCCCCCccc
Q ss_pred c
Q 035544 360 K 360 (727)
Q Consensus 360 k 360 (727)
|
T Consensus 229 k 229 (230)
T PF10146_consen 229 K 229 (230)
T ss_pred C
No 247
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=37.67 E-value=1.4e+02 Score=37.79 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035544 235 AQLSRQRKKHYVEELEDKV 253 (727)
Q Consensus 235 AqrSRqRKKqYVeeLE~KV 253 (727)
.+.++.+....|.+++.+.
T Consensus 370 ~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 248
>PRK02119 hypothetical protein; Provisional
Probab=37.67 E-value=1.3e+02 Score=26.56 Aligned_cols=32 Identities=13% Similarity=0.311 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASL 277 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~L 277 (727)
|++|-.-|...++++..|++++..|......+
T Consensus 25 ie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 25 LEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444455555555555555555444443
No 249
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=37.38 E-value=2.1e+02 Score=34.84 Aligned_cols=17 Identities=18% Similarity=0.110 Sum_probs=9.5
Q ss_pred CCceEEEEEEe-cceeEE
Q 035544 695 SLSRIFVVVLL-DSVKYV 711 (727)
Q Consensus 695 slsrifvvvl~-dsvkyv 711 (727)
-..|++.|-.. ++|-+|
T Consensus 1142 ~~d~~~~~~~~~~g~S~~ 1159 (1164)
T TIGR02169 1142 YADRAIGVTMRRNGESQV 1159 (1164)
T ss_pred hcceeEeEEEecCCeeEE
Confidence 34566666665 565444
No 250
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=37.36 E-value=87 Score=29.03 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhc
Q 035544 250 EDKVRNMHSTIADL--NSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 250 E~KVk~LEsENqeL--r~qls~LqaEN~~LRqQL~~ 283 (727)
+.++..+|.+.+.| +..++.|+.+...|+-++..
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~ 83 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKE 83 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHH
Confidence 55555555555555 55555555555555554443
No 251
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=37.25 E-value=1.7e+02 Score=27.67 Aligned_cols=45 Identities=20% Similarity=0.281 Sum_probs=20.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 228 LMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASL 277 (727)
Q Consensus 228 llRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~L 277 (727)
+-+||.+++..++-...|--.|. -|.|+..|.+++..+..+...+
T Consensus 55 msQNRq~~~dr~ra~~D~~inl~-----ae~ei~~l~~~l~~l~~~~~~~ 99 (108)
T PF06210_consen 55 MSQNRQAARDRLRAELDYQINLK-----AEQEIERLHRKLDALREKLGEL 99 (108)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHhHHH
Confidence 45788887753333333332221 2334444444444444443333
No 252
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=37.23 E-value=11 Score=35.05 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.+||.+...+.+++..|...+..|+.|...|++++..
T Consensus 2 ~~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~e 38 (118)
T PF08286_consen 2 QELDNEKFRLAKELSDLESELESLQSELEELKEELEE 38 (118)
T ss_dssp -------------------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555544
No 253
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=36.95 E-value=56 Score=28.00 Aligned_cols=29 Identities=7% Similarity=0.150 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 249 LEDKVRNMHSTIADLNSKISFFMAENASL 277 (727)
Q Consensus 249 LE~KVk~LEsENqeLr~qls~LqaEN~~L 277 (727)
+|+|+..||++.++.+++....+.+....
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~~~ 58 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAKQA 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666666666666665555443
No 254
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=36.78 E-value=1.7e+02 Score=30.10 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=5.2
Q ss_pred CCCCCCCCCcc
Q 035544 20 SIPPLDPPYLN 30 (727)
Q Consensus 20 ~ipp~~~~f~~ 30 (727)
-|||-+-+||.
T Consensus 21 GV~p~~~~~Y~ 31 (176)
T PF12999_consen 21 GVSPSDQHLYE 31 (176)
T ss_pred CCCHHHHHHcC
Confidence 44555544444
No 255
>PRK14162 heat shock protein GrpE; Provisional
Probab=36.63 E-value=87 Score=32.34 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 035544 248 ELEDKVRNMHSTIADLN 264 (727)
Q Consensus 248 eLE~KVk~LEsENqeLr 264 (727)
+|..++..+.++...++
T Consensus 57 elkd~~lR~~AEfeN~r 73 (194)
T PRK14162 57 DLEDKYLRSQAEIQNMQ 73 (194)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 256
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.46 E-value=2.3e+02 Score=35.37 Aligned_cols=60 Identities=18% Similarity=0.234 Sum_probs=38.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 222 MKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 222 eKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
.|....+.++-..=.--+.+-...++.|.++.+.|+.||++|++++..+..+...|+.|+
T Consensus 649 ~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~ 708 (970)
T KOG0946|consen 649 EKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQL 708 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555566666677778888888888888888777766555444444443
No 257
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=36.35 E-value=98 Score=30.56 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 035544 263 LNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 263 Lr~qls~LqaEN~~LRqQL~~ 283 (727)
|++++.++++|...+++++..
T Consensus 71 l~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 71 LNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 258
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=36.27 E-value=1.6e+02 Score=26.56 Aligned_cols=46 Identities=30% Similarity=0.402 Sum_probs=29.7
Q ss_pred HHHHHHHHhHH-HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 223 KRKARLMRNRE-SAQLSRQRKKH----YVEELEDKVRNMHSTIADLNSKIS 268 (727)
Q Consensus 223 KR~RRllRNRE-SAqrSRqRKKq----YVeeLE~KVk~LEsENqeLr~qls 268 (727)
+.+.+++++=+ |-.+-|.||.+ .++.|..++..|+.+|..|+.++.
T Consensus 49 ~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 49 KELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444433 33455666644 567788888888889988888764
No 259
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=36.23 E-value=33 Score=39.88 Aligned_cols=28 Identities=18% Similarity=0.388 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFM 271 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~Lq 271 (727)
+.|++|++|+++|++|..+|+++++..+
T Consensus 31 qkie~L~kql~~Lk~q~~~l~~~v~k~e 58 (489)
T PF11853_consen 31 QKIEALKKQLEELKAQQDDLNDRVDKVE 58 (489)
T ss_pred HHHHHHHHHHHHHHHhhcccccccchhh
Confidence 3566666666666666666655554443
No 260
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.17 E-value=1.1e+02 Score=34.63 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=23.9
Q ss_pred HHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 227 RLMRNRESA-QLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 227 RllRNRESA-qrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+.+-+|..| |.+=+|.++.+ -.=.+.|+.+.+.|++++..|++...-|+....+
T Consensus 224 eeeme~~~aeq~slkRt~EeL---~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 224 EEEMERLQAEQESLKRTEEEL---NIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHhhHHHH---HhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 333344444 44444444433 2223334444445555555555555555444443
No 261
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=36.11 E-value=1.3e+02 Score=31.94 Aligned_cols=55 Identities=18% Similarity=0.272 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 221 EMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENAS 276 (727)
Q Consensus 221 EeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~ 276 (727)
-..|.|++.||.|==..- .+-++.+..|..+++.|++.|-+|=+++..|+.-+..
T Consensus 85 tsQRDRFR~Rn~ELE~el-r~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~~~ 139 (248)
T PF08172_consen 85 TSQRDRFRQRNAELEEEL-RKQQQTISSLRREVESLRADNVKLYEKIRYLQSYNNK 139 (248)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Confidence 345566677776654444 3345567899999999999999999999999876654
No 262
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=36.09 E-value=79 Score=35.23 Aligned_cols=38 Identities=16% Similarity=0.051 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISF---FMAENASLKQQL 281 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~---LqaEN~~LRqQL 281 (727)
++...|.++.+.|.+||.+|+.++.. +++||..|+..+
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr~ll 97 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSYEEANQTPPLFSEIL 97 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44466667777777777777555544 346666555444
No 263
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=36.00 E-value=2.3e+02 Score=31.37 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=14.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 225 KARLMRNRESAQLSRQRKKHYVEELEDKVR 254 (727)
Q Consensus 225 ~RRllRNRESAqrSRqRKKqYVeeLE~KVk 254 (727)
.-+.+|||+..++-++++.+....+..+..
T Consensus 278 KTk~qRnK~~r~k~~~~~~~~~k~~k~~~~ 307 (387)
T PF07767_consen 278 KTKAQRNKEKRRKEEERKEKERKKEKKKIK 307 (387)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555554444443333
No 264
>PRK04406 hypothetical protein; Provisional
Probab=35.95 E-value=1.4e+02 Score=26.54 Aligned_cols=26 Identities=19% Similarity=0.462 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMA 272 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~Lqa 272 (727)
++|-.-|...+.++..|++++..|..
T Consensus 28 e~LN~~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 28 EELNDALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555555544
No 265
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=35.92 E-value=2.3e+02 Score=34.54 Aligned_cols=11 Identities=18% Similarity=0.428 Sum_probs=5.1
Q ss_pred ccccccccCCC
Q 035544 382 LVPLVDVKYGG 392 (727)
Q Consensus 382 l~p~vn~~~g~ 392 (727)
|.|++...||.
T Consensus 612 ~~~~~~~~lg~ 622 (1164)
T TIGR02169 612 YEPAFKYVFGD 622 (1164)
T ss_pred HHHHHHHHCCC
Confidence 34444445553
No 266
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=35.91 E-value=2.8e+02 Score=29.24 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 035544 263 LNSKISFFMAENASLKQQ 280 (727)
Q Consensus 263 Lr~qls~LqaEN~~LRqQ 280 (727)
|..++..++.+...|.+.
T Consensus 80 Le~e~~e~~~~i~~l~ee 97 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEE 97 (246)
T ss_dssp -HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 267
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.89 E-value=1.8e+02 Score=31.42 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=17.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 227 RLMRNRESAQLSRQRKKHYVEELEDKVRNMH 257 (727)
Q Consensus 227 RllRNRESAqrSRqRKKqYVeeLE~KVk~LE 257 (727)
++..--.+.|+.+.+.+..+++||.++..++
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444556666666666666666666555
No 268
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=35.85 E-value=81 Score=28.53 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLKQ 279 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LRq 279 (727)
+.|+.+.+.++.+.++++.++..++...+++-+
T Consensus 87 ~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 119 (120)
T PF02996_consen 87 KELEEQLEKLEKELAELQAQIEQLEQTLQQLYQ 119 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555666666666666666666655555433
No 269
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=35.84 E-value=1.7e+02 Score=30.61 Aligned_cols=43 Identities=9% Similarity=0.123 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhccCCC
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASL---KQQLSGSNAM 287 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~L---RqQL~~~~a~ 287 (727)
.++..+ ....++.+||++|++++..|+.++..| +++..+++..
T Consensus 63 ~~~~~~-~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~l 108 (276)
T PRK13922 63 GVFESL-ASLFDLREENEELKKELLELESRLQELEQLEAENARLREL 108 (276)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333 345678899999999999999998855 4444444433
No 270
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=35.82 E-value=77 Score=29.82 Aligned_cols=30 Identities=17% Similarity=0.316 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 256 MHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 256 LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
+..+.+.++++++.|.++|..|++++..+.
T Consensus 55 l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~ 84 (117)
T COG2919 55 LQRQIAAQQAELEKLSARNTALEAEIKDLK 84 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555555666666666666666665533
No 271
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=35.45 E-value=1.9e+02 Score=30.73 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 249 LEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 249 LE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+.++.+.|+.|.++....++.++.++..|+.|...
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~ 190 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEG 190 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555566666655544
No 272
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=35.10 E-value=3.1e+02 Score=29.47 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=23.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 225 KARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKIS 268 (727)
Q Consensus 225 ~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls 268 (727)
.+++..-.+++.+.=.-++.-+++|+.++..++.+.+.+++++.
T Consensus 33 l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~ 76 (239)
T COG1579 33 LKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIK 76 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555556666666666666665555544443
No 273
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=35.06 E-value=95 Score=31.59 Aligned_cols=20 Identities=10% Similarity=0.116 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035544 258 STIADLNSKISFFMAENASL 277 (727)
Q Consensus 258 sENqeLr~qls~LqaEN~~L 277 (727)
..|..|...+..|..+-..|
T Consensus 95 ~~N~~L~~dl~klt~~~~~l 114 (182)
T PF15035_consen 95 KANEALQEDLQKLTQDWERL 114 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 274
>PRK02793 phi X174 lysis protein; Provisional
Probab=35.05 E-value=1.5e+02 Score=26.02 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMAENASLK 278 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LR 278 (727)
-|++|-.-|...+.++..|++++..|......++
T Consensus 23 tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 23 TIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3566666666666777777777777766555544
No 275
>PRK09343 prefoldin subunit beta; Provisional
Probab=34.96 E-value=1.2e+02 Score=28.71 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 251 DKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 251 ~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
.+++.|+.+...|+.++..++.+.+.|.++.
T Consensus 85 ~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 85 LRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555555555555555555544444443
No 276
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=34.95 E-value=2.9e+02 Score=30.27 Aligned_cols=34 Identities=6% Similarity=0.220 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 250 EDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 250 E~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+.+++.++.+..+.++++..++......|.+|..
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~ 239 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGE 239 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444445555555555555555544
No 277
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=34.95 E-value=97 Score=31.53 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFF 270 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~L 270 (727)
|.-.|.+++.|+++|++|+.+++.|
T Consensus 42 vSL~erQ~~~LR~~~~~L~~~l~~L 66 (225)
T PF04340_consen 42 VSLVERQLERLRERNRQLEEQLEEL 66 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 278
>PRK14154 heat shock protein GrpE; Provisional
Probab=34.92 E-value=87 Score=32.78 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKIS 268 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls 268 (727)
+++|..++..+.++...++++..
T Consensus 68 ~~elkd~~lRl~ADfeNyRKR~~ 90 (208)
T PRK14154 68 VDEYKTQYLRAQAEMDNLRKRIE 90 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 279
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=34.81 E-value=1.9e+02 Score=30.86 Aligned_cols=45 Identities=13% Similarity=0.193 Sum_probs=26.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 226 ARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFF 270 (727)
Q Consensus 226 RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~L 270 (727)
|-.++-|+.+|.--++|.+|+..+-.....++.+..+|+.++++.
T Consensus 152 K~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a 196 (243)
T cd07666 152 MGVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA 196 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 345666677777777776666665544445555555555555443
No 280
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=34.62 E-value=3e+02 Score=30.89 Aligned_cols=46 Identities=11% Similarity=0.237 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 035544 242 KKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAM 287 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~ 287 (727)
.+..+.+++.+.+++..-+.++..++..+..|....|+++...+..
T Consensus 278 ~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~ 323 (359)
T PF10498_consen 278 AQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSS 323 (359)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3344455555555666666667777778888888888888876643
No 281
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=34.57 E-value=1.4e+02 Score=28.59 Aligned_cols=7 Identities=43% Similarity=0.301 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 035544 243 KHYVEEL 249 (727)
Q Consensus 243 KqYVeeL 249 (727)
|.-.++|
T Consensus 29 K~S~~eL 35 (107)
T PF09304_consen 29 KTSQGEL 35 (107)
T ss_dssp HHHHHHH
T ss_pred HhhHHHH
Confidence 3333333
No 282
>PRK11239 hypothetical protein; Provisional
Probab=34.56 E-value=58 Score=34.37 Aligned_cols=26 Identities=19% Similarity=0.493 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMA 272 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~Lqa 272 (727)
+.||.+|..|++|.++|+++++.|..
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~l~~ 211 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDSLLA 211 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44777777777776666666666554
No 283
>PRK14158 heat shock protein GrpE; Provisional
Probab=34.54 E-value=1e+02 Score=31.79 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035544 247 EELEDKVRNMHSTIADLNSK 266 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~q 266 (727)
++|+.++..+.++...++++
T Consensus 57 ~el~d~~lR~~AefeN~RkR 76 (194)
T PRK14158 57 AANWDKYLRERADLENYRKR 76 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333
No 284
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=34.53 E-value=1.3e+02 Score=35.04 Aligned_cols=65 Identities=9% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035544 222 MKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAMP 288 (727)
Q Consensus 222 eKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~p 288 (727)
+...|..+--++=+-.-++|+...+..+-++.+.|+.|| |+.++++|..||..||..+..+...+
T Consensus 263 EEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~En--lqmr~qqleeentelRs~~arlksl~ 327 (502)
T KOG0982|consen 263 EEQRREQELRAEESLSEEERRHREILIKKEREASLEKEN--LQMRDQQLEEENTELRSLIARLKSLA 327 (502)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
No 285
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=34.33 E-value=1.4e+02 Score=27.59 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 035544 249 LEDKVRNMHSTIADLNSKISFF 270 (727)
Q Consensus 249 LE~KVk~LEsENqeLr~qls~L 270 (727)
|+..++.|+...+.|++++..+
T Consensus 98 l~~~~~~l~~~l~~l~~~~~~i 119 (126)
T TIGR00293 98 LEKAIEKLQEALAELASRAQQL 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 286
>PHA02562 46 endonuclease subunit; Provisional
Probab=34.10 E-value=2.2e+02 Score=32.10 Aligned_cols=30 Identities=17% Similarity=0.312 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 248 ELEDKVRNMHSTIADLNSKISFFMAENASL 277 (727)
Q Consensus 248 eLE~KVk~LEsENqeLr~qls~LqaEN~~L 277 (727)
.||.+...++.+..+|..++..+..+...+
T Consensus 369 ~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 398 (562)
T PHA02562 369 ELQAEFVDNAEELAKLQDELDKIVKTKSEL 398 (562)
T ss_pred HHHhhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444443333
No 287
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=33.98 E-value=2.2e+02 Score=28.26 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 248 ELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 248 eLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.||..+..+..++.+++++++.++.+...|+..+..
T Consensus 43 ~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (151)
T PF14584_consen 43 NLEDLLNELFDQIDELKEELEELEKRIEELEEKLRN 78 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 588888888888888888888888888888887765
No 288
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=33.94 E-value=1.1e+02 Score=31.34 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 035544 263 LNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 263 Lr~qls~LqaEN~~LRqQL~~ 283 (727)
+..++..|.-|+..|.+++..
T Consensus 98 ~ek~l~~Lk~e~evL~qr~~k 118 (201)
T PF13851_consen 98 LEKELKDLKWEHEVLEQRFEK 118 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666665544
No 289
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=33.93 E-value=1.5e+02 Score=35.46 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhc
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKIS----------FFMAENASLKQQLSG 283 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls----------~LqaEN~~LRqQL~~ 283 (727)
..+++-|.+++.|+++|..|+.+++ .+..|+..|.+.|..
T Consensus 301 ~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~ 350 (581)
T KOG0995|consen 301 SEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNK 350 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666677777766554 456677777776665
No 290
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=33.63 E-value=1.8e+02 Score=31.00 Aligned_cols=21 Identities=38% Similarity=0.645 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 035544 263 LNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 263 Lr~qls~LqaEN~~LRqQL~~ 283 (727)
+.+.++.|..-|+.||.||..
T Consensus 233 ~~eei~fLk~tN~qLKaQLeg 253 (259)
T KOG4001|consen 233 MKEEIEFLKETNRQLKAQLEG 253 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 445566677778899998864
No 291
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=33.48 E-value=2.8e+02 Score=29.75 Aligned_cols=50 Identities=14% Similarity=0.300 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 234 SAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 234 SAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
..++.=++.+..++.+-..+..++.+...|+.++.+++.+.+.++.++..
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~ 77 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKR 77 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555566666666666677777777777777766654
No 292
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=33.43 E-value=2.3e+02 Score=33.65 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=17.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 223 KRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMH 257 (727)
Q Consensus 223 KR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LE 257 (727)
|....+++......+....-+..++.|+..+...+
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ 184 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEE 184 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555545555555554444333
No 293
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=33.39 E-value=1.5e+02 Score=25.22 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=30.7
Q ss_pred HHHHHHHHHhHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 222 MKRKARLMRNRESAQLSRQ---RKKHY-VEELEDKVRNMHSTIADLNSKISFFMAE 273 (727)
Q Consensus 222 eKR~RRllRNRESAqrSRq---RKKqY-VeeLE~KVk~LEsENqeLr~qls~LqaE 273 (727)
.++..+=.+-|+.|.+-++ ..+.- ..+.+.++...+..+..|+.++..++.+
T Consensus 7 ~~~i~~E~ki~~Gae~m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~~ 62 (70)
T PF02185_consen 7 QKKIDKELKIKEGAENMLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKLQQR 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555666778877776 22322 5666666666666666666666555443
No 294
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=33.32 E-value=77 Score=26.39 Aligned_cols=31 Identities=19% Similarity=0.425 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKISFFMAE 273 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~qls~LqaE 273 (727)
+++-+..|++++.+.+++++|+++.+.|..+
T Consensus 11 qe~~d~IEqkiedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 11 QEHYDNIEQKIEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp ----THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 4566788899998888888888776666544
No 295
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=33.28 E-value=1.6e+02 Score=26.20 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.+|.......+.+|+.|..++..|......|-.++..
T Consensus 31 ~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~r 67 (70)
T PF04899_consen 31 ADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLER 67 (70)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666677777777777777777777776654
No 296
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=33.21 E-value=3.4e+02 Score=28.52 Aligned_cols=8 Identities=0% Similarity=0.057 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 035544 255 NMHSTIAD 262 (727)
Q Consensus 255 ~LEsENqe 262 (727)
.|+.+++.
T Consensus 78 ~lEE~~~~ 85 (193)
T PF14662_consen 78 SLEEENRS 85 (193)
T ss_pred HHHHHHHH
Confidence 33333333
No 297
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=33.11 E-value=1.9e+02 Score=29.56 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAE 273 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaE 273 (727)
..|+.++..++....+|+.++..|+.+
T Consensus 102 ~~l~~~~~~~~~~v~~l~~~l~~L~~k 128 (219)
T TIGR02977 102 EALERELAAVEETLAKLQEDIAKLQAK 128 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333
No 298
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=33.08 E-value=2.3e+02 Score=30.79 Aligned_cols=8 Identities=38% Similarity=0.547 Sum_probs=3.5
Q ss_pred cceec-ccc
Q 035544 53 FDFTI-DDL 60 (727)
Q Consensus 53 f~~t~-dd~ 60 (727)
..|.| ||+
T Consensus 23 ~~I~F~dDl 31 (325)
T PF08317_consen 23 TGIRFYDDL 31 (325)
T ss_pred hCceeCCCc
Confidence 34444 444
No 299
>PRK09343 prefoldin subunit beta; Provisional
Probab=32.80 E-value=1.4e+02 Score=28.36 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 242 KKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
|.+-..+|+.+++.++.++..|..+...|+.....+..+|..
T Consensus 69 ~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ 110 (121)
T PRK09343 69 KTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINE 110 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444457777777888888888888888888888888888776
No 300
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=32.75 E-value=3.5e+02 Score=28.90 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 239 RQRKKHYVEELEDKVRNMHSTIADLNSKIS 268 (727)
Q Consensus 239 RqRKKqYVeeLE~KVk~LEsENqeLr~qls 268 (727)
++.+++....||.+...++.....|.+++.
T Consensus 224 ~e~~~~~~~~le~~~~~~ee~~~~L~ekme 253 (297)
T PF02841_consen 224 EEKQKEQEQMLEQQERSYEEHIKQLKEKME 253 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555566666666665555554443
No 301
>PRK14140 heat shock protein GrpE; Provisional
Probab=32.60 E-value=1.1e+02 Score=31.46 Aligned_cols=38 Identities=13% Similarity=0.323 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+++|+.++..|+.++.+|+.++..+++|...+|.+..+
T Consensus 39 ~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~r 76 (191)
T PRK14140 39 LDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQK 76 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555443
No 302
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=32.60 E-value=1.7e+02 Score=33.43 Aligned_cols=35 Identities=9% Similarity=0.154 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 251 DKVRNMHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 251 ~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
++...+..+..+|..++..++.+...|+++|....
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445555666677777777777777777776644
No 303
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.58 E-value=1.8e+02 Score=33.77 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=33.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 224 RKARLMRNRESAQLSRQRKKHYVEE-------------LEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 224 R~RRllRNRESAqrSRqRKKqYVee-------------LE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
--.|+..||...+.-|++++..|.. ||.+...-...-.+|++-+.-+..|+..|+..|.+
T Consensus 101 ~~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~ 173 (542)
T KOG0993|consen 101 MCQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAK 173 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3445666776666666666654444 44444333333445555555666666666666544
No 304
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=32.44 E-value=1.1e+02 Score=34.01 Aligned_cols=38 Identities=21% Similarity=0.436 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+++||+++.+++.|.+.+++.|...++.|.-|...|..
T Consensus 184 ~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLdd 221 (323)
T PF08537_consen 184 IDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDD 221 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56778888888888888888888888888888887765
No 305
>PRK00295 hypothetical protein; Provisional
Probab=32.36 E-value=1.3e+02 Score=26.19 Aligned_cols=34 Identities=12% Similarity=0.267 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMAENASLK 278 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LR 278 (727)
-|++|-..|...+.++..|++++..|......+.
T Consensus 20 tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 20 TIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567777777778888889999888877766665
No 306
>PRK14143 heat shock protein GrpE; Provisional
Probab=32.14 E-value=1.2e+02 Score=32.32 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKIS 268 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls 268 (727)
+++|..++..+.++...++++..
T Consensus 83 ~~elkd~~lR~~AdfeN~RKR~~ 105 (238)
T PRK14143 83 LEELNSQYMRIAADFDNFRKRTS 105 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 307
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=32.11 E-value=66 Score=36.13 Aligned_cols=32 Identities=19% Similarity=0.362 Sum_probs=17.8
Q ss_pred HHhhhcccCccCCCCcc-eeeeeecCCCCCcee
Q 035544 582 WFQEGLSGPLLSSGMCT-EVFQFDASPAPGAII 613 (727)
Q Consensus 582 wf~eg~~gp~lssgmct-evfqfd~s~~~g~iv 613 (727)
+|--|--||-.+.=|=| -.+||||-=++.||-
T Consensus 337 ~~isg~v~~sit~l~~~~~l~~~~i~f~~~g~~ 369 (420)
T PF07407_consen 337 YFISGPVGPSITCLMKTYALYSVEIVFGEKGLY 369 (420)
T ss_pred ceEeccccchHHHHHHHhhhheeEEEEcCCceE
Confidence 34444444444433322 367899876676665
No 308
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=31.85 E-value=97 Score=27.14 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 035544 266 KISFFMAENASLKQQLSG 283 (727)
Q Consensus 266 qls~LqaEN~~LRqQL~~ 283 (727)
.+..|.+||..|+++|..
T Consensus 48 e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 48 ENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334556666666666543
No 309
>PRK14148 heat shock protein GrpE; Provisional
Probab=31.85 E-value=1.2e+02 Score=31.38 Aligned_cols=38 Identities=11% Similarity=0.246 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
++.|+.++..|+.++.+|+.++..+++|...+|.++.+
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~r 79 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555444
No 310
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=31.80 E-value=3e+02 Score=33.58 Aligned_cols=44 Identities=9% Similarity=0.234 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 240 QRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 240 qRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
++..+.+++|+++.+.|+..-..|.++++........|.+++..
T Consensus 575 e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~ 618 (717)
T PF10168_consen 575 EQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDR 618 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567777777777777777888888777777777777665
No 311
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.76 E-value=3e+02 Score=31.30 Aligned_cols=45 Identities=27% Similarity=0.382 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 239 RQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 239 RqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
|.|.++.++.|....+.|...-++|+.-.+.|+++..+|.||+..
T Consensus 220 R~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~ 264 (365)
T KOG2391|consen 220 RRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQS 264 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444555555555555444
No 312
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=31.71 E-value=1.4e+02 Score=28.16 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLKQQ 280 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQ 280 (727)
+.|+..++.|+.+...++.++..++.....|.++
T Consensus 104 ~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 104 EELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555444
No 313
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=31.38 E-value=2.6e+02 Score=30.06 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 240 QRKKHYVEELEDKVRNMHSTIADLNSKISF 269 (727)
Q Consensus 240 qRKKqYVeeLE~KVk~LEsENqeLr~qls~ 269 (727)
++..+.+..||.+|+.-..++++|+..+..
T Consensus 70 ~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~ 99 (272)
T KOG4552|consen 70 QKREQLMRTLEAHVEKRDEVIQQLQKNLKS 99 (272)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455667788888888887888888776654
No 314
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=31.30 E-value=2.9e+02 Score=29.97 Aligned_cols=39 Identities=10% Similarity=0.340 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 232 RESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFF 270 (727)
Q Consensus 232 RESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~L 270 (727)
+.-=+...++-...+..|+.++..|++++...++++..|
T Consensus 69 k~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 69 KAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555666666666655555544444443
No 315
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=31.26 E-value=68 Score=32.57 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhc
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMAE-----NASLKQQLSG 283 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~LqaE-----N~~LRqQL~~ 283 (727)
.+..+|+++..|.+-...-+++...|... ...|||.|.+
T Consensus 37 EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnlsk 80 (162)
T PF04201_consen 37 ELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNLSK 80 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHHHH
Confidence 35666777777776666666666666555 4556666665
No 316
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=31.15 E-value=4.1e+02 Score=27.14 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHhccC
Q 035544 265 SKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 265 ~qls~LqaEN~~LRqQL~~~~ 285 (727)
.++..|+.||..|+.-|..|.
T Consensus 70 ~qi~~Lq~EN~eL~~~leEhq 90 (181)
T PF05769_consen 70 RQIRQLQQENRELRQSLEEHQ 90 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888877654
No 317
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=31.02 E-value=2.3e+02 Score=28.26 Aligned_cols=36 Identities=28% Similarity=0.486 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
++|+...+.|++..++|.+++..++++++.+-++..
T Consensus 104 ~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~ 139 (145)
T COG1730 104 EELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQA 139 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666667777777777777777777766554
No 318
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=30.90 E-value=3.6e+02 Score=26.21 Aligned_cols=65 Identities=22% Similarity=0.368 Sum_probs=45.9
Q ss_pred HHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccCCC
Q 035544 221 EMKRKARLM-RNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFF---MAENASLKQQLSGSNAM 287 (727)
Q Consensus 221 EeKR~RRll-RNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~L---qaEN~~LRqQL~~~~a~ 287 (727)
+.+..|+=+ +-=..+..||-.=-.++++|..++..||.-...|+..++.+ ..+.. |++|...++.
T Consensus 16 ~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKpVT~dV~--rwklmG~GaL 84 (112)
T PF07439_consen 16 EVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSEMKPVTDDVK--RWKLMGMGAL 84 (112)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhccchHHHHH--HHHHhccchh
Confidence 334444422 33345567788888899999999999999999999888875 34444 7788766654
No 319
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=30.88 E-value=1.5e+02 Score=27.45 Aligned_cols=37 Identities=11% Similarity=0.187 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhc
Q 035544 247 EELEDKVRNMHSTIADLNSKISFF--MAENASLKQQLSG 283 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~L--qaEN~~LRqQL~~ 283 (727)
..++++.+.|++||++|..+.... +-+|...|+.-.+
T Consensus 26 ~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee 64 (87)
T PF10883_consen 26 KKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEE 64 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334444666666777766555544 3345555555443
No 320
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=30.69 E-value=3.3e+02 Score=30.40 Aligned_cols=27 Identities=11% Similarity=0.252 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAE 273 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaE 273 (727)
..|..++..|+.+...++..+.+|..|
T Consensus 138 ~kL~k~i~~Le~e~~~~q~~le~Lr~E 164 (310)
T PF09755_consen 138 NKLQKKIERLEKEKSAKQEELERLRRE 164 (310)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 444444444444443344444444333
No 321
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=30.59 E-value=3.2e+02 Score=33.10 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=8.7
Q ss_pred CceEEEEEEec-ce
Q 035544 696 LSRIFVVVLLD-SV 708 (727)
Q Consensus 696 lsrifvvvl~d-sv 708 (727)
-.|||.|.... +|
T Consensus 1158 ~d~~~~~~~~~~~~ 1171 (1179)
T TIGR02168 1158 ADQLYGVTMQEKGV 1171 (1179)
T ss_pred hhhHeeeeeccCCc
Confidence 56777777773 53
No 322
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=30.36 E-value=86 Score=33.58 Aligned_cols=36 Identities=17% Similarity=0.063 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhccCCC
Q 035544 252 KVRNMHSTIADLNSKISFFMAENAS----LKQQLSGSNAM 287 (727)
Q Consensus 252 KVk~LEsENqeLr~qls~LqaEN~~----LRqQL~~~~a~ 287 (727)
.+.+|++||++|++++..|+++... |+++..+++..
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~L 106 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLREL 106 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566889999999998877555443 56666665544
No 323
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=30.33 E-value=2.2e+02 Score=28.07 Aligned_cols=43 Identities=26% Similarity=0.203 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 241 RKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 241 RKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
||.. +..+|..+-...+.+..|+..+..++.+...|++.+...
T Consensus 88 ~~~~-~~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~ 130 (146)
T PF08702_consen 88 RKMI-IYILETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQQ 130 (146)
T ss_dssp HHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 677888888888888999999999999999999998773
No 324
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=30.24 E-value=96 Score=28.27 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 255 NMHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 255 ~LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
.++.+...|+.++..++.+|..|.++|...+
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566778899999999999999999987654
No 325
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=30.13 E-value=1.5e+02 Score=31.39 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 240 QRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 240 qRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
..||+||+.||.+++.|......|-.+-..|..--..+-.-+..++
T Consensus 25 ~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~ 70 (234)
T cd07665 25 EEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLG 70 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999988777776655555443333333333333
No 326
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=30.10 E-value=1.1e+02 Score=27.45 Aligned_cols=6 Identities=0% Similarity=0.479 Sum_probs=2.1
Q ss_pred HHHHHH
Q 035544 251 DKVRNM 256 (727)
Q Consensus 251 ~KVk~L 256 (727)
++++.|
T Consensus 77 ~~l~~l 82 (104)
T PF13600_consen 77 EELEAL 82 (104)
T ss_pred HHHHHH
Confidence 333333
No 327
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=29.78 E-value=2.3e+02 Score=23.45 Aligned_cols=40 Identities=13% Similarity=0.250 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 035544 248 ELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAM 287 (727)
Q Consensus 248 eLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~ 287 (727)
.|-.++.+|.+-.++|++.+.+-..|.+-||.-+.+-.+|
T Consensus 5 ~l~~ql~~l~~~l~elk~~l~~Q~kE~~~LRntI~eC~aC 44 (45)
T PF11598_consen 5 QLIKQLSELNQMLQELKELLRQQIKETRFLRNTIMECQAC 44 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4556778888888899999999999999999999876655
No 328
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.55 E-value=2.1e+02 Score=35.72 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 035544 263 LNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 263 Lr~qls~LqaEN~~LRqQL~~ 283 (727)
|+.+..+|+.|...|.-++.+
T Consensus 435 ~nak~~ql~~eletLn~k~qq 455 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQ 455 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555444444
No 329
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=29.52 E-value=3.9e+02 Score=26.96 Aligned_cols=29 Identities=17% Similarity=0.408 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 252 KVRNMHSTIADLNSKISFFMAENASLKQQ 280 (727)
Q Consensus 252 KVk~LEsENqeLr~qls~LqaEN~~LRqQ 280 (727)
.+..|+....+|+.++..++.+-..|+.+
T Consensus 113 ~~~~l~~~l~~l~~kl~e~k~k~~~l~ar 141 (221)
T PF04012_consen 113 QVEKLKEQLEELEAKLEELKSKREELKAR 141 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444333
No 330
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=29.45 E-value=1.5e+02 Score=26.95 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASL 277 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~L 277 (727)
.+++.|+.+++.|+.+...|..++..++.+...|
T Consensus 70 ~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 70 ERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667777777777777777776666554
No 331
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=29.44 E-value=1.3e+02 Score=35.79 Aligned_cols=46 Identities=22% Similarity=0.206 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 035544 242 KKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAM 287 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~ 287 (727)
+++-++.||.+++.+=.+++.|++..+.+...++.|+.+|.+.+..
T Consensus 361 ~nsI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 361 SNSINKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788999888888888888888888888888888888774433
No 332
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=29.42 E-value=3.7e+02 Score=34.18 Aligned_cols=64 Identities=25% Similarity=0.333 Sum_probs=44.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhccC
Q 035544 222 MKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNS------------KISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 222 eKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~------------qls~LqaEN~~LRqQL~~~~ 285 (727)
....-|-+.||.-.+.++.|..+|-++.|.+-+.|+++++.|++ --..++.|-.+|+.+|...+
T Consensus 1027 ~~~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr 1102 (1189)
T KOG1265|consen 1027 NAGRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKR 1102 (1189)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667788888888888888888888887777766665543 22345677778888877644
No 333
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=29.40 E-value=1.4e+02 Score=29.52 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 249 LEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 249 LE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
||+..+.|+.++..|+.++....++...||..|..
T Consensus 86 LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~LYa 120 (131)
T KOG1760|consen 86 LEEKKETLEKEIEELESELESISARMDELKKVLYA 120 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455556666666666666777777777754
No 334
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=29.36 E-value=1.1e+02 Score=38.60 Aligned_cols=45 Identities=24% Similarity=0.194 Sum_probs=32.5
Q ss_pred HHHhHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 228 LMRNRESAQLSRQ------------RKKHYVEELEDKVRNMHSTIADLNSKISFFMA 272 (727)
Q Consensus 228 llRNRESAqrSRq------------RKKqYVeeLE~KVk~LEsENqeLr~qls~Lqa 272 (727)
++-+|-.|..... .+.+++++||+.+-.|+.||+.|..+|+.|..
T Consensus 502 ~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 502 LELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4445566655443 34566778888888899999999998887755
No 335
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=29.25 E-value=3.5e+02 Score=29.63 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=9.2
Q ss_pred HHHHhHHHHHHHHHHH
Q 035544 227 RLMRNRESAQLSRQRK 242 (727)
Q Consensus 227 RllRNRESAqrSRqRK 242 (727)
.-+||||.+-.-++++
T Consensus 131 K~IR~~E~sl~p~R~~ 146 (271)
T PF13805_consen 131 KSIRNREESLQPSRDR 146 (271)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHH
Confidence 5678887664433333
No 336
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=29.24 E-value=1.2e+02 Score=27.86 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASL 277 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~L 277 (727)
++.||.+++.|+.+...|+.++..++.+.+.|
T Consensus 76 ~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 76 KETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457777778877788888888777776555
No 337
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=29.24 E-value=3.3e+02 Score=33.01 Aligned_cols=8 Identities=13% Similarity=0.455 Sum_probs=4.0
Q ss_pred cceeeeee
Q 035544 597 CTEVFQFD 604 (727)
Q Consensus 597 ctevfqfd 604 (727)
||.|+++|
T Consensus 1171 ~~~~~~~~ 1178 (1179)
T TIGR02168 1171 VSKIVSVD 1178 (1179)
T ss_pred ceeEeecc
Confidence 45555544
No 338
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=29.17 E-value=2.3e+02 Score=32.77 Aligned_cols=63 Identities=16% Similarity=0.139 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 035544 221 EMKRKARLMRNRESAQLSRQRKK------------HYVEELEDKVRNMHSTIADLNS-------KISFFMAENASLKQQL 281 (727)
Q Consensus 221 EeKR~RRllRNRESAqrSRqRKK------------qYVeeLE~KVk~LEsENqeLr~-------qls~LqaEN~~LRqQL 281 (727)
-.+.+.|+..-|.+=...|.|.. ..|..||.++..++.+...|+. ++..|+.+...|++|+
T Consensus 251 v~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QI 330 (434)
T PRK15178 251 VKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQI 330 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHH
Confidence 34445566666777777776653 5677888888777777776643 3445566666666666
Q ss_pred hc
Q 035544 282 SG 283 (727)
Q Consensus 282 ~~ 283 (727)
..
T Consensus 331 a~ 332 (434)
T PRK15178 331 GE 332 (434)
T ss_pred HH
Confidence 54
No 339
>COG5570 Uncharacterized small protein [Function unknown]
Probab=29.07 E-value=1.1e+02 Score=26.23 Aligned_cols=37 Identities=30% Similarity=0.322 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Q 035544 244 HYVEELEDKVRNMHSTIAD--------------LNSKISFFMAENASLKQQ 280 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqe--------------Lr~qls~LqaEN~~LRqQ 280 (727)
.++.+||.+-..|+.|+++ |+++--.|..|...||.|
T Consensus 5 shl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 5 SHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3567777777777766553 555555666666666655
No 340
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=28.93 E-value=3.3e+02 Score=31.84 Aligned_cols=38 Identities=21% Similarity=0.406 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
++.|++|..++..+..+|+-++..|.++-+.|+.++..
T Consensus 455 ~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 455 REDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34566666677777788888888888888888888876
No 341
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=28.89 E-value=3.6e+02 Score=32.38 Aligned_cols=59 Identities=15% Similarity=0.239 Sum_probs=41.9
Q ss_pred HHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 227 RLMRNRESAQLSRQR--KKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 227 RllRNRESAqrSRqR--KKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
.++|...|.+.-..+ =++++.+|-.+|..|..+..++..++..|+.....|+.++....
T Consensus 10 q~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~ 70 (617)
T PF15070_consen 10 QAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP 70 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 344444454444443 36778888888888888888888888888888888888776533
No 342
>PRK14160 heat shock protein GrpE; Provisional
Probab=28.84 E-value=1.5e+02 Score=31.02 Aligned_cols=38 Identities=11% Similarity=0.276 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+..|+.++..|+.+..+|+.++..++++...+|.+..+
T Consensus 63 ~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~k 100 (211)
T PRK14160 63 NNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAK 100 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777788888888888888888887777777665
No 343
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=28.84 E-value=2.3e+02 Score=27.74 Aligned_cols=10 Identities=40% Similarity=0.375 Sum_probs=4.0
Q ss_pred HHHHHHHHhc
Q 035544 274 NASLKQQLSG 283 (727)
Q Consensus 274 N~~LRqQL~~ 283 (727)
...|.+++..
T Consensus 76 k~~l~~ql~q 85 (131)
T PF11068_consen 76 KNQLLQQLEQ 85 (131)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 344
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=28.81 E-value=79 Score=30.20 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 252 KVRNMHSTIADLNSKISFFMAENA 275 (727)
Q Consensus 252 KVk~LEsENqeLr~qls~LqaEN~ 275 (727)
+.+.|++||+-|+-+++-|.....
T Consensus 80 k~~~LeEENNlLklKievLLDMLt 103 (108)
T cd07429 80 KNQQLEEENNLLKLKIEVLLDMLA 103 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677778777777777655443
No 345
>PRK14139 heat shock protein GrpE; Provisional
Probab=28.81 E-value=1.3e+02 Score=30.82 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 035544 256 MHSTIADLNSKISFFMAENASL 277 (727)
Q Consensus 256 LEsENqeLr~qls~LqaEN~~L 277 (727)
|+.++.+|+.++-.+++|...+
T Consensus 44 le~e~~elkd~~lR~~AefeN~ 65 (185)
T PRK14139 44 AEAKAAELQDSFLRAKAETENV 65 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 346
>PRK12704 phosphodiesterase; Provisional
Probab=28.79 E-value=3.6e+02 Score=31.62 Aligned_cols=11 Identities=27% Similarity=0.295 Sum_probs=5.6
Q ss_pred cccCccCCCCc
Q 035544 587 LSGPLLSSGMC 597 (727)
Q Consensus 587 ~~gp~lssgmc 597 (727)
.+|.|-.-|..
T Consensus 363 ~AgLLHDIGK~ 373 (520)
T PRK12704 363 RAGLLHDIGKA 373 (520)
T ss_pred HHHHHHccCcC
Confidence 35555555554
No 347
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=28.73 E-value=2.8e+02 Score=34.53 Aligned_cols=36 Identities=19% Similarity=0.125 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 248 ELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 248 eLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+.....+.|+..|.+|.+.++.+..||..|+..+..
T Consensus 445 es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~e 480 (861)
T PF15254_consen 445 ESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQE 480 (861)
T ss_pred HHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334456778888888888888888888776543
No 348
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=28.70 E-value=1.9e+02 Score=27.80 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 035544 242 KKHYVEELEDKVRNMHSTIADLNSKISFF--MAENASLKQQL 281 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsENqeLr~qls~L--qaEN~~LRqQL 281 (727)
-..+++.++.+-+.+..|.++|..+++.| +.+.+.|.+..
T Consensus 40 a~~F~~kV~~qH~~~~~e~r~L~kKi~~l~veRkmr~Les~p 81 (109)
T PF11690_consen 40 AYDFIDKVVDQHQRYCDERRKLRKKIQDLRVERKMRALESHP 81 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 34567888888888999999999999988 77777765443
No 349
>PHA03161 hypothetical protein; Provisional
Probab=28.57 E-value=2.6e+02 Score=28.32 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 035544 270 FMAENASLKQQL 281 (727)
Q Consensus 270 LqaEN~~LRqQL 281 (727)
|+.....||..|
T Consensus 94 L~drv~eLkeel 105 (150)
T PHA03161 94 LQDKILELKEDI 105 (150)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 350
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=28.36 E-value=3.3e+02 Score=29.29 Aligned_cols=19 Identities=16% Similarity=0.399 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035544 252 KVRNMHSTIADLNSKISFF 270 (727)
Q Consensus 252 KVk~LEsENqeLr~qls~L 270 (727)
|+..||.|...||.||+++
T Consensus 123 KIsALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 123 KISALEDELSRLRAQIAKI 141 (253)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554
No 351
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=28.32 E-value=3.6e+02 Score=31.62 Aligned_cols=11 Identities=27% Similarity=0.338 Sum_probs=5.5
Q ss_pred eeEEeecCCceE
Q 035544 477 ASLYVPRNDKLV 488 (727)
Q Consensus 477 a~lyvprn~k~v 488 (727)
+-+++| ++|.|
T Consensus 243 viV~LP-~~k~i 253 (475)
T PRK10361 243 VIVRLP-QGKDV 253 (475)
T ss_pred EEEECC-CCCCc
Confidence 345666 34543
No 352
>PRK14151 heat shock protein GrpE; Provisional
Probab=28.32 E-value=1.2e+02 Score=30.74 Aligned_cols=36 Identities=11% Similarity=0.248 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
..|+.++..|+.+..+|+.++-.+++|...+|.+..
T Consensus 23 ~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~ 58 (176)
T PRK14151 23 DDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAE 58 (176)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443
No 353
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=28.32 E-value=1.7e+02 Score=29.49 Aligned_cols=42 Identities=21% Similarity=0.374 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
+.|...|+.++..++.++..|+..+.....+....++.|..+
T Consensus 78 ~~~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn 119 (158)
T PF09486_consen 78 RRYRDVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARN 119 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777777777777777777777766666666553
No 354
>PRK06835 DNA replication protein DnaC; Validated
Probab=28.21 E-value=3.2e+02 Score=30.02 Aligned_cols=58 Identities=12% Similarity=0.298 Sum_probs=28.4
Q ss_pred HHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH--H------HHHHHHHHHHHHHHHHHHhc
Q 035544 226 ARLMRNRESAQLSRQRKKHY-------VEELEDKVRNMHSTIAD--L------NSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 226 RRllRNRESAqrSRqRKKqY-------VeeLE~KVk~LEsENqe--L------r~qls~LqaEN~~LRqQL~~ 283 (727)
|...+.|..+++-.+++++. +.+|+.++..+--+... | ...++.|.+++..|+++...
T Consensus 11 r~y~~~r~~~~~~~~~r~~e~~~~~P~~~~id~~i~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 83 (329)
T PRK06835 11 KEYEKRRDKEELELKNRKEEVYKKIPEIAEIDDEIAKLGIKLSRAILKNPDKKEETLKELKEKITDLRVKKAE 83 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433 45566665544222211 2 44566777777777555433
No 355
>PRK06798 fliD flagellar capping protein; Validated
Probab=28.19 E-value=2.9e+02 Score=31.53 Aligned_cols=31 Identities=13% Similarity=0.153 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 253 VRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 253 Vk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
-+.|.++...|...+.+|+.+...|.+++..
T Consensus 406 e~~l~~qf~ale~~ms~lnsQ~s~l~~~~~~ 436 (440)
T PRK06798 406 QDNIVDKYQKLESTLAALDSQLKTIKAMTKQ 436 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445556666666666666666666666554
No 356
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=27.91 E-value=1.1e+02 Score=33.43 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAE 273 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaE 273 (727)
+.+||++...|+.++++|+++-+++++|
T Consensus 6 L~eL~qrk~~Lq~eIe~LerR~~ri~~E 33 (283)
T PF11285_consen 6 LKELEQRKQALQIEIEQLERRRERIEKE 33 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555444444444
No 357
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=27.88 E-value=2.8e+02 Score=35.43 Aligned_cols=38 Identities=32% Similarity=0.468 Sum_probs=27.3
Q ss_pred ccccCCCCCCCceEEEEEeCCcccCCCCCCCccCCCCCceEEEEEEecceeEEE
Q 035544 659 KESFAGNKSASSMVVSVLVDPRETGDGDVEGMISPKSLSRIFVVVLLDSVKYVT 712 (727)
Q Consensus 659 ~~~~~~~k~~ss~vvsvl~dpre~gd~d~d~~~~~kslsrifvvvl~dsvkyvt 712 (727)
+.+|+++- =+|||. -+||..- --++|=+-++|+|--||
T Consensus 1130 kthF~~sQ---FIVVSL-----------KeGMF~N--ANvLFrtrF~DG~Stv~ 1167 (1174)
T KOG0933|consen 1130 KTHFTHSQ---FIVVSL-----------KEGMFNN--ANVLFRTRFVDGVSTVQ 1167 (1174)
T ss_pred HhhCCCCe---EEEEEc-----------hhhcccc--chhhheeeeecCceeee
Confidence 56777653 467775 2788853 34789999999998776
No 358
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=27.81 E-value=1.4e+02 Score=32.28 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQ 280 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQ 280 (727)
..+++|+++.+.++.|...+++++..++.++..|+.-
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (364)
T TIGR01242 6 VRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSP 42 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4678889999999999999999999999988877764
No 359
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=27.80 E-value=4.3e+02 Score=30.60 Aligned_cols=7 Identities=29% Similarity=0.667 Sum_probs=3.6
Q ss_pred ceEEEEc
Q 035544 412 GRVLTIN 418 (727)
Q Consensus 412 ~rv~~v~ 418 (727)
|.|++|+
T Consensus 352 G~vvIld 358 (420)
T COG4942 352 GLVVILD 358 (420)
T ss_pred ceEEEEE
Confidence 4555554
No 360
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=27.71 E-value=32 Score=27.47 Aligned_cols=28 Identities=18% Similarity=0.571 Sum_probs=20.1
Q ss_pred ccccchHHHHHHHHHHHHHhhcccccccc
Q 035544 360 KTKKVASVSFLGLLFFILLFGGLVPLVDV 388 (727)
Q Consensus 360 ktkkvasvsllgllf~~~~fg~l~p~vn~ 388 (727)
+..|+|.++++ +|.++++++.+.|++-|
T Consensus 13 ~~nk~a~~gl~-il~~~vl~ai~~p~~~p 40 (56)
T PF12911_consen 13 RRNKLAVIGLI-ILLILVLLAIFAPFISP 40 (56)
T ss_pred HhCchHHHHHH-HHHHHHHHHHHHHHcCC
Confidence 45678888887 66666777777787755
No 361
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=27.71 E-value=4.8e+02 Score=23.90 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 256 MHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 256 LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
.+.++..|..++..|+.++..|...|...
T Consensus 79 k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 79 KEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666553
No 362
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=27.62 E-value=2e+02 Score=27.63 Aligned_cols=19 Identities=42% Similarity=0.496 Sum_probs=13.3
Q ss_pred ChHHHHHHHHHHHhHHHHH
Q 035544 218 GEEEMKRKARLMRNRESAQ 236 (727)
Q Consensus 218 eEkEeKR~RRllRNRESAq 236 (727)
+|++.+.++|..|||||-+
T Consensus 50 EER~K~E~~~q~r~rES~~ 68 (121)
T PF10669_consen 50 EERSKKEEKRQKRNRESKR 68 (121)
T ss_pred HHHHHHHHHHHHHhhhhHH
Confidence 3566666778888888743
No 363
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.60 E-value=62 Score=26.72 Aligned_cols=8 Identities=0% Similarity=0.405 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 035544 252 KVRNMHST 259 (727)
Q Consensus 252 KVk~LEsE 259 (727)
+++.+++|
T Consensus 56 ~l~~le~e 63 (68)
T PF06305_consen 56 ELKKLEKE 63 (68)
T ss_pred HHHHHHHH
Confidence 33333333
No 364
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=27.53 E-value=1.6e+02 Score=30.03 Aligned_cols=48 Identities=15% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 035544 240 QRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAM 287 (727)
Q Consensus 240 qRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~ 287 (727)
..+|+||++||..++.|......|-.+-..|..-...+-..+..++.+
T Consensus 7 ~~~k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~ 54 (216)
T cd07627 7 IEKKQYLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSL 54 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 365
>PRK14155 heat shock protein GrpE; Provisional
Probab=27.50 E-value=1.2e+02 Score=31.75 Aligned_cols=21 Identities=10% Similarity=0.196 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 035544 247 EELEDKVRNMHSTIADLNSKI 267 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~ql 267 (727)
++|+.++..+.++.+.++++.
T Consensus 30 ~elkd~~lR~~AefeN~RKR~ 50 (208)
T PRK14155 30 AALKDQALRYAAEAENTKRRA 50 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 366
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=27.49 E-value=36 Score=34.00 Aligned_cols=42 Identities=14% Similarity=0.321 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAM 287 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~ 287 (727)
+..|...+..|+.+.++|+.++..|..||..||..+..+...
T Consensus 10 ~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~ 51 (181)
T PF09311_consen 10 MRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQK 51 (181)
T ss_dssp HHHHHHHHHHHHHCCHHHHT----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777788888888889999999999999988875544
No 367
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=27.47 E-value=98 Score=31.77 Aligned_cols=12 Identities=25% Similarity=0.315 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHh
Q 035544 271 MAENASLKQQLS 282 (727)
Q Consensus 271 qaEN~~LRqQL~ 282 (727)
.+|.+.||.+|.
T Consensus 67 ~eEvr~Lr~~LR 78 (194)
T PF15619_consen 67 NEEVRVLRERLR 78 (194)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 368
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=27.45 E-value=2.4e+02 Score=29.65 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 241 RKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 241 RKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
.|...++..|.++.....+...|+.++..|.+|+..||..+...
T Consensus 63 ~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 63 TKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 46667778888888888888999999999999999999999886
No 369
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=27.40 E-value=4e+02 Score=33.51 Aligned_cols=66 Identities=20% Similarity=0.284 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H------HHHHHHHHHHHHHHHHHHH
Q 035544 220 EEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHST--------------I------ADLNSKISFFMAENASLKQ 279 (727)
Q Consensus 220 kEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsE--------------N------qeLr~qls~LqaEN~~LRq 279 (727)
.|+||+.--..-|++-+.-|++++...+.+++++..+++. . +-+..+++.|..|+..|..
T Consensus 605 aE~kRl~ee~~Ere~~R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k~~d~ed~e~lD~d~i~~~q~eel~Ke~kElq~ 684 (988)
T KOG2072|consen 605 AEEKRLIEEKKEREAKRILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEKLDADQIKARQIEELEKERKELQS 684 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666777777766666777766666521 1 1146788899999999998
Q ss_pred HHhccC
Q 035544 280 QLSGSN 285 (727)
Q Consensus 280 QL~~~~ 285 (727)
+|....
T Consensus 685 rL~~q~ 690 (988)
T KOG2072|consen 685 RLQYQE 690 (988)
T ss_pred HHHHHH
Confidence 887644
No 370
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=27.38 E-value=2.9e+02 Score=28.08 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISF 269 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~ 269 (727)
.++-||.+.+.++++.++|++.++.
T Consensus 86 R~~lLe~~~~~l~~ri~eLe~~l~~ 110 (175)
T PRK13182 86 DFEQLEAQLNTITRRLDELERQLQQ 110 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544443
No 371
>PRK14161 heat shock protein GrpE; Provisional
Probab=27.33 E-value=1.5e+02 Score=30.22 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+.++.+++.|+.+..+|+.++..+++|...+|.+..+
T Consensus 22 ~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~k 58 (178)
T PRK14161 22 ETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEK 58 (178)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555544443
No 372
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=27.15 E-value=2e+02 Score=27.13 Aligned_cols=16 Identities=13% Similarity=0.059 Sum_probs=6.8
Q ss_pred HHHHHHHhHHHHHHHH
Q 035544 224 RKARLMRNRESAQLSR 239 (727)
Q Consensus 224 R~RRllRNRESAqrSR 239 (727)
....+.++.....++.
T Consensus 95 A~~~l~~~~~~l~~~~ 110 (140)
T PRK03947 95 AIEILDKRKEELEKAL 110 (140)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 373
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.13 E-value=78 Score=26.14 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035544 258 STIADLNSKISFFMAENASL 277 (727)
Q Consensus 258 sENqeLr~qls~LqaEN~~L 277 (727)
.++.+++++++.++.|+..|
T Consensus 48 ~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 48 RRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33444444444444444444
No 374
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=27.11 E-value=3e+02 Score=28.62 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 253 VRNMHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 253 Vk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
..+|+.+..+|..+++.++.+...|...|....
T Consensus 108 ~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~~ 140 (181)
T KOG3335|consen 108 IMELRLKVEKLENAIAELTKFFSQLHSKLNKPE 140 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 445556666666666666666666665555543
No 375
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=26.85 E-value=1.7e+02 Score=26.65 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENAS 276 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~ 276 (727)
+.|+.++..|+.+...++.++..++.+.+.
T Consensus 97 ~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 97 ETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666677777666665544
No 376
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=26.84 E-value=1.8e+02 Score=28.78 Aligned_cols=40 Identities=18% Similarity=0.259 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.++..||..++.+..|..+|+.+...+++....||+.|..
T Consensus 47 ~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~ 86 (162)
T PF05565_consen 47 KVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLD 86 (162)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888889999998888888888888888766
No 377
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=26.80 E-value=5.5e+02 Score=27.00 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 035544 269 FFMAENASLKQQL 281 (727)
Q Consensus 269 ~LqaEN~~LRqQL 281 (727)
.|+.|...||+++
T Consensus 266 ~le~el~~l~~~~ 278 (312)
T PF00038_consen 266 ELEEELAELREEM 278 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHH
Confidence 3344444444444
No 378
>PRK03918 chromosome segregation protein; Provisional
Probab=26.77 E-value=3.9e+02 Score=32.06 Aligned_cols=16 Identities=25% Similarity=0.169 Sum_probs=7.5
Q ss_pred eEEEEEEecceeEEEE
Q 035544 698 RIFVVVLLDSVKYVTY 713 (727)
Q Consensus 698 rifvvvl~dsvkyvty 713 (727)
+|++|---+++..|.+
T Consensus 862 ~~~~l~~~~~~s~~~~ 877 (880)
T PRK03918 862 YVIRVSLEGGVSKVEV 877 (880)
T ss_pred eEEEEEecCCeeEEEe
Confidence 4444444455544443
No 379
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=26.76 E-value=2.2e+02 Score=36.28 Aligned_cols=44 Identities=11% Similarity=0.192 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 233 ESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENAS 276 (727)
Q Consensus 233 ESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~ 276 (727)
++++.--+.+.+.++.+|+-.+++++++++|++++++|++++..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (1123)
T PRK11448 166 AQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAE 209 (1123)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444445555555555555555544433
No 380
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=26.75 E-value=4.4e+02 Score=26.53 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 248 ELEDKVRNMHSTIADLNSKISFFMAENASLKQQ 280 (727)
Q Consensus 248 eLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQ 280 (727)
.++.+.+.|...+.+|+....+|+.....+..+
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q 118 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKNLSDQ 118 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 444445555555555555555555444444333
No 381
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=26.68 E-value=1.9e+02 Score=26.22 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 035544 262 DLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 262 eLr~qls~LqaEN~~LRqQL~ 282 (727)
+|-..|+.|+.|...|.+++.
T Consensus 58 eLL~EIA~lE~eV~~LE~~v~ 78 (88)
T PF14389_consen 58 ELLEEIALLEAEVAKLEQKVL 78 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555543
No 382
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=26.53 E-value=3.7e+02 Score=27.41 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 035544 237 LSRQRKKHYVEELEDKVRNMHSTIADLN----SKISFFMAENASLKQQL 281 (727)
Q Consensus 237 rSRqRKKqYVeeLE~KVk~LEsENqeLr----~qls~LqaEN~~LRqQL 281 (727)
..|.+.-+.+++|+.+++.|+.+...+. .++..+..+...++..+
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~a 151 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAA 151 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777777776666543 34555555555555443
No 383
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=26.53 E-value=3.9e+02 Score=28.27 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
..+..+.+.+..+...|+.++..++.+...+++.+..
T Consensus 131 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 167 (301)
T PF14362_consen 131 ASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQC 167 (301)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777888888888877777777665
No 384
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=26.53 E-value=4.7e+02 Score=30.83 Aligned_cols=64 Identities=16% Similarity=0.097 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 219 EEEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVR--------NMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 219 EkEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk--------~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
+.+.|-..|++..+..-.+--++.+..+.+++..+. .|+..++++.+.+..+..+...|..||.
T Consensus 374 e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 374 EAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 385
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=26.50 E-value=2.3e+02 Score=28.19 Aligned_cols=48 Identities=17% Similarity=0.273 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035544 241 RKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAMP 288 (727)
Q Consensus 241 RKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~p 288 (727)
.+++|++.||.+++.|......|..+...|......|-.-+...+.+-
T Consensus 28 ~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E 75 (236)
T PF09325_consen 28 EIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSE 75 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 357899999999999988888888888888777777777776655543
No 386
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=26.44 E-value=1.5e+02 Score=26.72 Aligned_cols=16 Identities=13% Similarity=0.445 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 035544 252 KVRNMHSTIADLNSKI 267 (727)
Q Consensus 252 KVk~LEsENqeLr~ql 267 (727)
+++.++.+...++..+
T Consensus 99 ~~~~~~~~~~~~~~~l 114 (120)
T PF02996_consen 99 ELAELQAQIEQLEQTL 114 (120)
T ss_dssp HHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 387
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=26.35 E-value=1.4e+02 Score=27.57 Aligned_cols=14 Identities=7% Similarity=0.242 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHST 259 (727)
Q Consensus 246 VeeLE~KVk~LEsE 259 (727)
++.|.++.++|..|
T Consensus 32 ~~kL~~en~qlk~E 45 (87)
T PF10883_consen 32 NAKLQKENEQLKTE 45 (87)
T ss_pred HHHHHHHHHHHHHH
Confidence 33343443333333
No 388
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=26.25 E-value=2.8e+02 Score=29.70 Aligned_cols=14 Identities=29% Similarity=0.403 Sum_probs=9.6
Q ss_pred ccccCCceEEEEcC
Q 035544 406 FYNQHRGRVLTING 419 (727)
Q Consensus 406 ~~~~~~~rv~~v~~ 419 (727)
-|+..+|+|..|+.
T Consensus 341 ~~~~~~g~V~~i~~ 354 (423)
T TIGR01843 341 RYGILNGKVKSISP 354 (423)
T ss_pred ccCCccEEEEEECC
Confidence 34456888888863
No 389
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=26.22 E-value=1.8e+02 Score=32.28 Aligned_cols=60 Identities=20% Similarity=0.201 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 218 GEEEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 218 eEkEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
.+.-...+.|+.-- ..-|+|..+..++|+.+.+.|.++|+..+..+..|......|..-.
T Consensus 86 ~~~H~lml~RL~~E----L~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~ 145 (355)
T PF09766_consen 86 DDEHQLMLARLEFE----LEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAA 145 (355)
T ss_pred CChHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444455555332 2337777788899999999999999888888888877766665544
No 390
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=26.18 E-value=4.6e+02 Score=26.93 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKISFFMAENA 275 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~ 275 (727)
+..++.++..+..|+.....|+.++..+...-.
T Consensus 105 ~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 105 ERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444443333
No 391
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=26.17 E-value=2e+02 Score=30.33 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 035544 240 QRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAM 287 (727)
Q Consensus 240 qRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~ 287 (727)
..|++||++||.+++.|......|-.+-..|..--..+-.-+..++.|
T Consensus 25 ~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~ 72 (234)
T cd07664 25 EEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNS 72 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 392
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=26.10 E-value=4.3e+02 Score=28.85 Aligned_cols=42 Identities=10% Similarity=0.185 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 240 QRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 240 qRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
+.+.+.++..+.++++|+.+...++++...++.|...|....
T Consensus 23 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (378)
T TIGR01554 23 EKLEKELTAAALEKEELETDVEKLKEEIKLLEDAIADLEKVT 64 (378)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344455555555555565555555555555555555544433
No 393
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.08 E-value=1.5e+02 Score=31.98 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFM 271 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~Lq 271 (727)
..+++++.+|..|...|+..+...+
T Consensus 60 ~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 60 RSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555444
No 394
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=26.04 E-value=3.1e+02 Score=35.77 Aligned_cols=44 Identities=11% Similarity=0.139 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 240 QRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 240 qRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
++|-+.|++||.++..-++....+..+|..|+.+...+...+..
T Consensus 1706 ~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~~ 1749 (1758)
T KOG0994|consen 1706 NEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHINE 1749 (1758)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34556666666666555555566666677777776666665544
No 395
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=25.91 E-value=1.7e+02 Score=26.23 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 035544 247 EELEDKVRNMHSTIADLNSKIS 268 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls 268 (727)
+.||.++..++.+.+.++.++.
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 80 EALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 396
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=25.88 E-value=3.7e+02 Score=34.37 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=10.8
Q ss_pred CcceeccccCCCCC
Q 035544 52 DFDFTIDDLYFASE 65 (727)
Q Consensus 52 df~~t~dd~yf~~e 65 (727)
|=.||||-.|+|.-
T Consensus 94 ~k~ftFDkVFGpes 107 (1041)
T KOG0243|consen 94 DKTFTFDKVFGPES 107 (1041)
T ss_pred cceeecceeeCcch
Confidence 55789999988854
No 397
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=25.75 E-value=4.1e+02 Score=33.56 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 232 RESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASL 277 (727)
Q Consensus 232 RESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~L 277 (727)
+.+.|.--+|-+.-++++|.+....+++.++|++.++.|+++...|
T Consensus 398 l~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~l 443 (980)
T KOG0980|consen 398 LLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADL 443 (980)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333355666555555555555555555444443333
No 398
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=25.73 E-value=4.4e+02 Score=29.49 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHhccC
Q 035544 266 KISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 266 qls~LqaEN~~LRqQL~~~~ 285 (727)
.+...+.+...|.++|..+.
T Consensus 373 ~L~~~~~rL~~l~~rL~~ls 392 (438)
T PRK00286 373 QLKRKRQRLEALAQQLEALS 392 (438)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 33344455555555555443
No 399
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=25.66 E-value=2e+02 Score=29.62 Aligned_cols=46 Identities=15% Similarity=0.328 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 240 QRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 240 qRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
..||+||++||.+++.|......|-.+...|..-...+-.-+..++
T Consensus 15 ~~~k~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~ 60 (224)
T cd07623 15 EEKQQQIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLS 60 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999888777776665555444444433333333
No 400
>PRK14147 heat shock protein GrpE; Provisional
Probab=25.65 E-value=1.5e+02 Score=30.04 Aligned_cols=18 Identities=0% Similarity=0.041 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 035544 248 ELEDKVRNMHSTIADLNS 265 (727)
Q Consensus 248 eLE~KVk~LEsENqeLr~ 265 (727)
+|..++..+.++...+++
T Consensus 36 elkd~~lR~~Ad~eN~rk 53 (172)
T PRK14147 36 LVKADALRERADLENQRK 53 (172)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344333333333333
No 401
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=25.61 E-value=1.5e+02 Score=30.94 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASL 277 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~L 277 (727)
|++|+.--+.|..+|..|+..+..+...|+.|
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L 41 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQL 41 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555566666555555443333333
No 402
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=25.51 E-value=6.3e+02 Score=27.68 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 259 TIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 259 ENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+.+.++.++..++.|...|..|+..
T Consensus 100 ~~n~~~~~l~~~~~e~~sl~~q~~~ 124 (314)
T PF04111_consen 100 EYNELQLELIEFQEERDSLKNQYEY 124 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555666666666544
No 403
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=25.31 E-value=3.4e+02 Score=35.30 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 236 QLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 236 qrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
|..-....+.+.++|.+.+.|+.++.+|+++++.++.+|..++..+
T Consensus 493 q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~ 538 (1317)
T KOG0612|consen 493 QHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSL 538 (1317)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444556677777778888888888888887777766664433
No 404
>PRK14141 heat shock protein GrpE; Provisional
Probab=25.24 E-value=1.3e+02 Score=31.47 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 252 KVRNMHSTIADLNSKISFFMAENASLKQQ 280 (727)
Q Consensus 252 KVk~LEsENqeLr~qls~LqaEN~~LRqQ 280 (727)
+++.|++++.+|+.++..+++|...+|.+
T Consensus 39 ~i~~le~e~~elkd~~lR~~Ae~eN~RKR 67 (209)
T PRK14141 39 PLEALKAENAELKDRMLRLAAEMENLRKR 67 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444443333333
No 405
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=25.19 E-value=4.4e+02 Score=26.09 Aligned_cols=46 Identities=11% Similarity=0.205 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 035544 241 RKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNA 286 (727)
Q Consensus 241 RKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a 286 (727)
+..+-++.+..=++..+++..+|+.++..|..|...||+....+++
T Consensus 43 ~~~~~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~l~rRP 88 (126)
T PF07028_consen 43 KLLEELKNLSKIQESQRSELKELKQELDVLSKELQALRKEYLERRP 88 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3333444444444555556666677777777777777776666553
No 406
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=25.15 E-value=1.2e+02 Score=33.97 Aligned_cols=31 Identities=10% Similarity=0.067 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 251 DKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 251 ~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
..+..|.+||++|++++..|++++..+.+..
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~ 87 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSYEEAN 87 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667889999999999999988887765443
No 407
>PRK00106 hypothetical protein; Provisional
Probab=25.15 E-value=4.4e+02 Score=31.25 Aligned_cols=14 Identities=21% Similarity=0.662 Sum_probs=10.3
Q ss_pred EEEEeCCcccCCCC
Q 035544 673 VSVLVDPRETGDGD 686 (727)
Q Consensus 673 vsvl~dpre~gd~d 686 (727)
|-|+|+|....|.+
T Consensus 485 iRviV~p~~v~D~~ 498 (535)
T PRK00106 485 IRIMVQPEKISDDQ 498 (535)
T ss_pred EEEEecCCcCChHH
Confidence 66888888877743
No 408
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=24.95 E-value=1.1e+02 Score=33.76 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAE 273 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaE 273 (727)
..++.|.+|++.|+.||..|+.+...|..|
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~e 189 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTE 189 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 455667777777777777777666666533
No 409
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=24.82 E-value=5e+02 Score=30.40 Aligned_cols=13 Identities=38% Similarity=0.373 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhc
Q 035544 271 MAENASLKQQLSG 283 (727)
Q Consensus 271 qaEN~~LRqQL~~ 283 (727)
..|-++|.|+|..
T Consensus 220 e~e~qELeqklea 232 (558)
T PF15358_consen 220 EAEWQELEQKLEA 232 (558)
T ss_pred hhhHHHHHHHHhh
Confidence 4567788888766
No 410
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=24.76 E-value=6.6e+02 Score=25.36 Aligned_cols=32 Identities=9% Similarity=0.139 Sum_probs=13.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 224 RKARLMRNRESAQLSRQRKKHYVEELEDKVRN 255 (727)
Q Consensus 224 R~RRllRNRESAqrSRqRKKqYVeeLE~KVk~ 255 (727)
|..++..+-..|.+.|+.=.+...+.|++++.
T Consensus 42 R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~ 73 (155)
T PRK06569 42 RQTNIQDNITQADTLTIEVEKLNKYYNEEIDK 73 (155)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333333333333
No 411
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=24.76 E-value=5.5e+02 Score=27.11 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
++.+..++..+..|+.....|..++..+......|+.+.
T Consensus 105 ~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~ 143 (225)
T COG1842 105 EAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARK 143 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444443
No 412
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=24.73 E-value=9.9e+02 Score=27.83 Aligned_cols=13 Identities=8% Similarity=0.228 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhc
Q 035544 271 MAENASLKQQLSG 283 (727)
Q Consensus 271 qaEN~~LRqQL~~ 283 (727)
...+..|-.-+..
T Consensus 380 ~v~~saLdtCika 392 (442)
T PF06637_consen 380 AVKTSALDTCIKA 392 (442)
T ss_pred HhhhhHHHHHHHh
Confidence 3445555555554
No 413
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=24.71 E-value=1.9e+02 Score=32.31 Aligned_cols=26 Identities=4% Similarity=0.115 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC
Q 035544 261 ADLNSKISFFMAENASLKQQLSGSNA 286 (727)
Q Consensus 261 qeLr~qls~LqaEN~~LRqQL~~~~a 286 (727)
.+|+++++.++.+...+++.+..++.
T Consensus 276 ~~~~~q~~~~~k~~~~~~~~~~~~~~ 301 (406)
T PF02388_consen 276 KELEEQLASLEKRIEEAEELIAEYGD 301 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33444555555555555555555443
No 414
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=24.67 E-value=28 Score=31.86 Aligned_cols=36 Identities=22% Similarity=0.417 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
++.|..++..|+.++..|+.++..++.+...|+..|
T Consensus 34 ~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 34 LERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 344444444444444444444444444444444444
No 415
>PRK14011 prefoldin subunit alpha; Provisional
Probab=24.63 E-value=1.9e+02 Score=28.54 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 231 NRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFM 271 (727)
Q Consensus 231 NRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~Lq 271 (727)
..+.|...=+||.++++ ...+.|....+++...+..++
T Consensus 85 ~~~eA~~~~~~ri~~l~---~~~~~l~~~i~~~~~~~~~l~ 122 (144)
T PRK14011 85 DVSEVIEDFKKSVEELD---KTKKEGNKKIEELNKEITKLR 122 (144)
T ss_pred cHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444333 333333333344444444333
No 416
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=24.62 E-value=2.6e+02 Score=27.62 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 254 RNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 254 k~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
.........-+++++.|..||..||.--
T Consensus 71 ~~~~~~l~~re~~i~rL~~ENe~lR~Wa 98 (135)
T TIGR03495 71 AQARALLAQREQRIERLKRENEDLRRWA 98 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHh
Confidence 3333333344556666777777777653
No 417
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=24.62 E-value=98 Score=32.42 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 248 ELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 248 eLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+|..++..+|+|+..|++-++.-+.....||..|..
T Consensus 48 elr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLGl 83 (208)
T KOG4010|consen 48 ELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLGL 83 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 455566677777777777777766666666666543
No 418
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=24.60 E-value=1.7e+02 Score=28.06 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFM 271 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~Lq 271 (727)
...||++...|+-++.-|...++...
T Consensus 81 ~~~LeEENNlLklKievLLDMLtett 106 (108)
T cd07429 81 NQQLEEENNLLKLKIEVLLDMLAETT 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677777777777766666655443
No 419
>PRK01203 prefoldin subunit alpha; Provisional
Probab=24.48 E-value=1.9e+02 Score=28.44 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNA 286 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a 286 (727)
++|+.+++.|+++.+.|+++++.|+.....+.+-+.....
T Consensus 3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~ 42 (130)
T PRK01203 3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSD 42 (130)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4688888888888888888888888888888776665444
No 420
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=24.39 E-value=1.9e+02 Score=33.10 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNA 286 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a 286 (727)
.|+++..+++.|..+...+..+...|..|+..||..+..+.+
T Consensus 246 ~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA 287 (561)
T KOG1103|consen 246 LIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEA 287 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 455666666667777777777777788888888888766443
No 421
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.36 E-value=1.7e+02 Score=31.00 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=20.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 035544 226 ARLMRNRESAQLSRQRKKHYVEELED 251 (727)
Q Consensus 226 RRllRNRESAqrSRqRKKqYVeeLE~ 251 (727)
+-.-+|+.+|-+|=+|||.|-++|++
T Consensus 54 k~~tkNKR~AlqaLkrKK~~E~qL~q 79 (221)
T KOG1656|consen 54 KYGTKNKRMALQALKRKKRYEKQLAQ 79 (221)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33556899999999999998777654
No 422
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=24.28 E-value=68 Score=37.86 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 035544 258 STIADLNSKISFFMAENASLKQQ 280 (727)
Q Consensus 258 sENqeLr~qls~LqaEN~~LRqQ 280 (727)
.||+.|..+++.|++||++||+.
T Consensus 650 ~eNe~l~aelk~lreenq~lr~~ 672 (673)
T KOG4378|consen 650 NENEMLKAELKFLREENQTLRCG 672 (673)
T ss_pred hhhHHHHHHHHHHHHhhhhhhcc
Confidence 57888999999999999999875
No 423
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=24.27 E-value=1.9e+02 Score=31.96 Aligned_cols=11 Identities=36% Similarity=0.295 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 035544 271 MAENASLKQQL 281 (727)
Q Consensus 271 qaEN~~LRqQL 281 (727)
+.|+++|||-+
T Consensus 123 RkEIkQLkQvi 133 (305)
T PF15290_consen 123 RKEIKQLKQVI 133 (305)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 424
>PF14645 Chibby: Chibby family
Probab=24.15 E-value=1e+02 Score=29.35 Aligned_cols=27 Identities=19% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 256 MHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 256 LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
...+++.|+++..+|++||..||-++.
T Consensus 69 ~~~~~~~l~~~n~~L~EENN~Lklk~e 95 (116)
T PF14645_consen 69 DGEENQRLRKENQQLEEENNLLKLKIE 95 (116)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
No 425
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=24.13 E-value=3.8e+02 Score=34.37 Aligned_cols=54 Identities=28% Similarity=0.370 Sum_probs=37.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 227 RLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQ 280 (727)
Q Consensus 227 RllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQ 280 (727)
|+.+-=-..+.-|.+-+.-+++++.+++.|..+..+++.++..++.|...|+.-
T Consensus 672 ~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~ 725 (1074)
T KOG0250|consen 672 RLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNT 725 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333333356666677777788888888888877777777777777777777663
No 426
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=24.12 E-value=3e+02 Score=22.92 Aligned_cols=39 Identities=15% Similarity=0.105 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
++|...+..++.+|.+...++..|+.-...|-.++..+.
T Consensus 3 eeL~~~l~~~e~~~~~k~~~v~eLe~YiD~LL~rVmE~~ 41 (48)
T PF09457_consen 3 EELISLLKKQEEENARKDSRVRELEDYIDNLLVRVMEQT 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 567778888888898888899999999888888887654
No 427
>PRK03918 chromosome segregation protein; Provisional
Probab=24.02 E-value=4.9e+02 Score=31.27 Aligned_cols=9 Identities=33% Similarity=0.445 Sum_probs=5.0
Q ss_pred CCCceEEEE
Q 035544 694 KSLSRIFVV 702 (727)
Q Consensus 694 kslsrifvv 702 (727)
.-.|+|.|+
T Consensus 870 ~~~s~~~~~ 878 (880)
T PRK03918 870 GGVSKVEVV 878 (880)
T ss_pred CCeeEEEec
Confidence 345666554
No 428
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=23.99 E-value=3.9e+02 Score=27.81 Aligned_cols=49 Identities=20% Similarity=0.102 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 235 AQLSRQRKKHYVEELEDKVRNM------------HSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 235 AqrSRqRKKqYVeeLE~KVk~L------------EsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.+++-+-=+.++.+||..+..- ..|..+|+.--+.++.|.++|.+||..
T Consensus 110 mr~~ln~FR~qm~dlE~~l~~QQalvy~hMSeeER~EaeQLQsLR~avRqElqELE~QL~D 170 (179)
T PF14723_consen 110 MRRSLNSFREQMMDLELHLMRQQALVYRHMSEEEREEAEQLQSLRSAVRQELQELEFQLED 170 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444456889998876432 235566777777788888888888865
No 429
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=23.89 E-value=2.1e+02 Score=30.16 Aligned_cols=19 Identities=16% Similarity=0.438 Sum_probs=13.0
Q ss_pred hhcccccccccCCCccCCC
Q 035544 379 FGGLVPLVDVKYGGIRDGV 397 (727)
Q Consensus 379 fg~l~p~vn~~~g~~~~~~ 397 (727)
|+..-.+|-.++|.|+...
T Consensus 141 ~ssvgs~Is~Kl~dmkNS~ 159 (208)
T KOG4010|consen 141 FSSVGSAISRKLGDMKNSA 159 (208)
T ss_pred HHHHhHHHHHHHhcccccH
Confidence 3444556778899998774
No 430
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=23.89 E-value=4.1e+02 Score=26.50 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=19.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 035544 228 LMRNRESAQLSRQRKKHYVEELEDK-------VRNMHSTIADLNSKISFFM 271 (727)
Q Consensus 228 llRNRESAqrSRqRKKqYVeeLE~K-------Vk~LEsENqeLr~qls~Lq 271 (727)
++..-+.|...-+||++.++.|... +..++.++.+++.++..++
T Consensus 133 ~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~ 183 (236)
T PF09325_consen 133 KLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAK 183 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555444332 3344444444444444433
No 431
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=23.79 E-value=3.1e+02 Score=35.53 Aligned_cols=41 Identities=12% Similarity=0.294 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 234 SAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAEN 274 (727)
Q Consensus 234 SAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN 274 (727)
+.+.+-++++..+..|+.++..++.|..+....+..+..|.
T Consensus 532 ~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~ 572 (1293)
T KOG0996|consen 532 ASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEE 572 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHH
Confidence 34444555666666666666555555554444444443333
No 432
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=23.77 E-value=3.6e+02 Score=29.93 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 035544 266 KISFFMAENASLKQQLSG 283 (727)
Q Consensus 266 qls~LqaEN~~LRqQL~~ 283 (727)
++..|+..+...|.+|..
T Consensus 96 qv~~lEgQl~s~Kkqie~ 113 (307)
T PF10481_consen 96 QVNFLEGQLNSCKKQIEK 113 (307)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333445555555555555
No 433
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=23.68 E-value=6.7e+02 Score=24.22 Aligned_cols=12 Identities=33% Similarity=0.404 Sum_probs=5.3
Q ss_pred HHHHHhHHHHHH
Q 035544 226 ARLMRNRESAQL 237 (727)
Q Consensus 226 RRllRNRESAqr 237 (727)
.|+.+-|..|+.
T Consensus 40 ~~l~~~r~~l~~ 51 (120)
T PF12325_consen 40 ARLEAERDELRE 51 (120)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 434
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=23.62 E-value=4.8e+02 Score=30.87 Aligned_cols=40 Identities=20% Similarity=0.376 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNA 286 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a 286 (727)
.+.+..+..++++..+|.+++++|++|.++|++++.....
T Consensus 89 ~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~ 128 (646)
T PRK05771 89 KDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEP 128 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445566677777777778888888888888877776553
No 435
>PRK14163 heat shock protein GrpE; Provisional
Probab=23.61 E-value=1.8e+02 Score=30.67 Aligned_cols=20 Identities=5% Similarity=0.290 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035544 248 ELEDKVRNMHSTIADLNSKI 267 (727)
Q Consensus 248 eLE~KVk~LEsENqeLr~ql 267 (727)
+|..++..+.++...++++.
T Consensus 58 el~d~~lR~~AEfeN~rkR~ 77 (214)
T PRK14163 58 ERTADLQRLQAEYQNYRRRV 77 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 436
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.61 E-value=2.6e+02 Score=32.33 Aligned_cols=54 Identities=24% Similarity=0.319 Sum_probs=28.0
Q ss_pred HHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 228 LMRNRESAQLSRQRK--KHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 228 llRNRESAqrSRqRK--KqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
..||+.|.+-.|..+ +.+...|-.+++.|..+...+..++..+++|...+...+
T Consensus 50 ~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~i 105 (429)
T COG0172 50 AERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLLTI 105 (429)
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhC
Confidence 345555555543222 224555666666666665555555555555554444433
No 437
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=23.59 E-value=2.1e+02 Score=34.03 Aligned_cols=20 Identities=35% Similarity=0.498 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035544 237 LSRQRKKHYVEELEDKVRNM 256 (727)
Q Consensus 237 rSRqRKKqYVeeLE~KVk~L 256 (727)
.+|+|-|+.|.+|-.++..+
T Consensus 35 ~sR~rEK~El~~LNDRLA~Y 54 (546)
T KOG0977|consen 35 DSREREKKELQELNDRLAVY 54 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35566666666665554443
No 438
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=23.54 E-value=2.1e+02 Score=35.29 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=14.0
Q ss_pred CccCCCCcceeeeeecCCCCCceeecCccc
Q 035544 590 PLLSSGMCTEVFQFDASPAPGAIIPASSVA 619 (727)
Q Consensus 590 p~lssgmctevfqfd~s~~~g~ivpas~~~ 619 (727)
|-+-.+||-+- | .+|+|+-|.+-+
T Consensus 604 pa~yva~c~~n----V--ksg~im~~lsd~ 627 (916)
T KOG0249|consen 604 PAWYVAACRAN----V--KSGAIMSALSDT 627 (916)
T ss_pred HHHHHHHHHHH----h--hhhHHHHhhhhH
Confidence 33556777652 2 567777765543
No 439
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=23.44 E-value=3.7e+02 Score=32.50 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 240 QRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQ 279 (727)
Q Consensus 240 qRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRq 279 (727)
+||.+.+.+-|..+..|.++..++...+++|++|...+|.
T Consensus 34 ~~kd~elr~rqt~~~~l~~~~~~~~~~i~~ltnel~k~r~ 73 (732)
T KOG0614|consen 34 QRKDAELRQRQTILEELIKEISKLEGEIAKLTNELDKLRS 73 (732)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhc
Confidence 3444444444444444444444444455555554444443
No 440
>PRK10963 hypothetical protein; Provisional
Probab=23.42 E-value=1.5e+02 Score=30.52 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035544 250 EDKVRNMHSTIADLNSKIS 268 (727)
Q Consensus 250 E~KVk~LEsENqeLr~qls 268 (727)
|.+++.|+++|.+|+.++.
T Consensus 43 ErQ~~~LR~r~~~Le~~l~ 61 (223)
T PRK10963 43 EWQMARQRNHIHVLEEEMT 61 (223)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344444433333
No 441
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=23.41 E-value=4.3e+02 Score=32.62 Aligned_cols=43 Identities=26% Similarity=0.457 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 241 RKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 241 RKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+|...+.-||.++..|..+.......+..|+.||..|+-++..
T Consensus 584 ~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~a 626 (786)
T PF05483_consen 584 KKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITA 626 (786)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4444455555566666665555566666778888888777654
No 442
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=23.38 E-value=2.8e+02 Score=31.21 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 241 RKKHYVEELEDKVRNMHSTIADLNSKI 267 (727)
Q Consensus 241 RKKqYVeeLE~KVk~LEsENqeLr~ql 267 (727)
..-+||-+||.+..+|-.+|.+|++.+
T Consensus 102 QTa~yI~~Le~~Kt~ll~qn~elKr~~ 128 (373)
T KOG0561|consen 102 QTADYIHQLEGHKTELLPQNGELKRLK 128 (373)
T ss_pred HHHHHHHHHHhcccccccccchHHHHH
Confidence 345788888888877777777766554
No 443
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=23.30 E-value=2.1e+02 Score=31.92 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhccC
Q 035544 272 AENASLKQQLSGSN 285 (727)
Q Consensus 272 aEN~~LRqQL~~~~ 285 (727)
+.++.|+.+|....
T Consensus 194 ~KIR~lq~~L~~~~ 207 (342)
T PF06632_consen 194 AKIRELQRLLASAK 207 (342)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 33666666676643
No 444
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=23.20 E-value=1.9e+02 Score=28.41 Aligned_cols=40 Identities=13% Similarity=0.231 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
..++++...++.++....+|+.++..-..|...||.+|..
T Consensus 80 a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~ 119 (131)
T PF04859_consen 80 AEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDE 119 (131)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666667777777777777777777888888877765
No 445
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.14 E-value=2.3e+02 Score=33.69 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=37.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 225 KARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 225 ~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
+||.-+-..|-|.+-.|.|+--. .|...|.+|++++..+..|.-.|..||.+++
T Consensus 679 ~k~v~k~kkaiq~~irknkeaNt-------VLaRLNseLqqqlkdv~~Erisle~qlEqlR 732 (737)
T KOG1955|consen 679 EKRVTKIKKAIQHVIRKNKEANT-------VLARLNSELQQQLKDVSDERISLETQLEQLR 732 (737)
T ss_pred hhhhhHHHHHHHHHHHhcchHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444445555555555554322 4555589999999999999999999998877
No 446
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=23.08 E-value=1.2e+02 Score=26.74 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 261 ADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 261 qeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
.+|.++|..|++|+.+|+.++....
T Consensus 28 ~El~eRIalLq~EIeRlkAe~~kK~ 52 (65)
T COG5509 28 AELEERIALLQAEIERLKAELAKKK 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566666777777777777776644
No 447
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=22.91 E-value=2.2e+02 Score=28.39 Aligned_cols=49 Identities=12% Similarity=0.186 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 220 EEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKIS 268 (727)
Q Consensus 220 kEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls 268 (727)
.-....+++.++.+.=.++++.=++-+++|.++...+.++++++..+..
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~ 139 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQA 139 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666666666677777777766666666655543
No 448
>PRK15396 murein lipoprotein; Provisional
Probab=22.88 E-value=1.9e+02 Score=26.25 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
++.|..++.++.++.+.++..+....+|-.+--++|
T Consensus 34 V~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~Rl 69 (78)
T PRK15396 34 VQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRL 69 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555544444544433443
No 449
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=22.86 E-value=4e+02 Score=32.39 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=13.2
Q ss_pred ecCCceEEEecceEEeehhhhhhhh
Q 035544 482 PRNDKLVKIDGNLIIHSVLASEKAM 506 (727)
Q Consensus 482 prn~k~vki~gnliihsvlaseka~ 506 (727)
|-.|..|..-|-+.+-.-=.=++|.
T Consensus 595 ~~~dV~i~~ld~~~vv~~eelr~~~ 619 (652)
T COG2433 595 PEGDVQIIRLDEFAVVDSEELRRAI 619 (652)
T ss_pred ecCceEEEEecceEeecHHHHHHHH
Confidence 3346677766666554433334443
No 450
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=22.83 E-value=6.5e+02 Score=26.96 Aligned_cols=36 Identities=11% Similarity=0.334 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
++.|+.++..++.+...++.++..++++...++.++
T Consensus 146 ~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~ 181 (423)
T TIGR01843 146 LELILAQIKQLEAELAGLQAQLQALRQQLEVISEEL 181 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555544444444444433
No 451
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=22.81 E-value=1.5e+02 Score=26.49 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAE 273 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaE 273 (727)
+.+.+|-++.+.|+.+...|+++|-.++.+
T Consensus 2 ~~L~~l~~~k~~Le~~L~~lE~qIy~~Et~ 31 (80)
T PF09340_consen 2 KELKELLQKKKKLEKDLAALEKQIYDKETS 31 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666665554
No 452
>PHA03065 Hypothetical protein; Provisional
Probab=22.64 E-value=2.4e+02 Score=32.79 Aligned_cols=52 Identities=31% Similarity=0.516 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-----HHHHHHHHHHHhc
Q 035544 232 RESAQLSRQRKKHYVEELEDKVRNM-------HSTIADLNSKISFF-----MAENASLKQQLSG 283 (727)
Q Consensus 232 RESAqrSRqRKKqYVeeLE~KVk~L-------EsENqeLr~qls~L-----qaEN~~LRqQL~~ 283 (727)
|.|-+..-+||++.++.||...+.| |+.-.+|+-+++.+ -+++..||..|..
T Consensus 89 r~a~~~~~kRK~~ei~~l~~~i~~ld~~d~~yEEikt~~~lrI~Kl~F~~fLa~~~nlk~~l~~ 152 (438)
T PHA03065 89 RKASKNTIKRKREEIEKLEDDIKNLDVDDEMYEEIKTDLELKIDKLSFQLFLANSNNLKRLLES 152 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHcchhhHHHHHHH
Confidence 5555666699999999999987632 33444555555544 4455566666554
No 453
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=22.60 E-value=2.4e+02 Score=25.87 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+++|-.++.+|+.....++.++.....|+.+-.++|..
T Consensus 34 vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn 71 (78)
T COG4238 34 VQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDN 71 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 46677777777777777777777777787777777754
No 454
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.53 E-value=2e+02 Score=29.04 Aligned_cols=47 Identities=9% Similarity=0.114 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 035544 241 RKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAM 287 (727)
Q Consensus 241 RKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~ 287 (727)
.-++|++.|+.++..++..+..|.++...|...-..|-..+...+.+
T Consensus 18 e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~ 64 (200)
T cd07624 18 KMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSAS 64 (200)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999888888888888887777776655
No 455
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=22.47 E-value=2.3e+02 Score=31.47 Aligned_cols=46 Identities=22% Similarity=0.197 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 238 SRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 238 SRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.|+--.+.+++||.++.+-.+....|+.|...|....+-||..|+.
T Consensus 18 ~~~y~~~ki~~~~~~v~~kt~nlrrleaqrneln~kvr~lreel~~ 63 (404)
T KOG0728|consen 18 LRQYYLQKIEELQLQVAEKTQNLRRLEAQRNELNAKVRLLREELQL 63 (404)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4455556667777776655555555555555555555555555544
No 456
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=22.45 E-value=4.6e+02 Score=33.01 Aligned_cols=12 Identities=33% Similarity=0.930 Sum_probs=6.0
Q ss_pred CCcceeccccCC
Q 035544 51 CDFDFTIDDLYF 62 (727)
Q Consensus 51 ~df~~t~dd~yf 62 (727)
-||.|-.--.||
T Consensus 746 ~DfkFGlTKVFF 757 (1259)
T KOG0163|consen 746 NDFKFGLTKVFF 757 (1259)
T ss_pred ccccccceeEee
Confidence 455555544433
No 457
>PHA02109 hypothetical protein
Probab=22.40 E-value=2.2e+02 Score=29.79 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 241 RKKHYVEELEDKVRNMHSTIADLNSKISFFMAENA 275 (727)
Q Consensus 241 RKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~ 275 (727)
-|-+.|.+||.++..|..|..+|+.++..+++|..
T Consensus 190 ~~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~Vk 224 (233)
T PHA02109 190 DKLKQISELTIKLEALSDEACQVKHKILNLRAEVK 224 (233)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888888888888777777777654
No 458
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=22.35 E-value=2.7e+02 Score=28.90 Aligned_cols=29 Identities=10% Similarity=0.189 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 255 NMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 255 ~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.+|.+..+.+.++++++.+.+.|..++..
T Consensus 166 ~ie~~L~~v~~eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 166 EIERELSRVRSEIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 45556666666666666666666666653
No 459
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=22.34 E-value=3.7e+02 Score=34.43 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=11.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q 035544 224 RKARLMRNRESAQLSRQRKKHYVE 247 (727)
Q Consensus 224 R~RRllRNRESAqrSRqRKKqYVe 247 (727)
..+-++.||.=-...-+++-.-++
T Consensus 374 alkllLEnrrlt~tleelqsss~E 397 (1195)
T KOG4643|consen 374 ALKLLLENRRLTGTLEELQSSSYE 397 (1195)
T ss_pred HHHHHHHhHHHHHHHHHHhhhhHH
Confidence 344566666544433333333333
No 460
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=22.27 E-value=2.1e+02 Score=30.09 Aligned_cols=8 Identities=13% Similarity=0.165 Sum_probs=3.0
Q ss_pred HHHHHHhc
Q 035544 276 SLKQQLSG 283 (727)
Q Consensus 276 ~LRqQL~~ 283 (727)
.|...|..
T Consensus 160 ~la~~ie~ 167 (200)
T PF07412_consen 160 YLAEVIER 167 (200)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333433
No 461
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=22.23 E-value=4.1e+02 Score=33.36 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 231 NRESAQLSRQRKKHYVEELEDKVR 254 (727)
Q Consensus 231 NRESAqrSRqRKKqYVeeLE~KVk 254 (727)
.|.++..-|.+.++|-..|+.+++
T Consensus 963 kRK~eEeqr~~qee~e~~l~~e~q 986 (1259)
T KOG0163|consen 963 KRKAEEEQRKAQEEEERRLALELQ 986 (1259)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344444444444444444444444
No 462
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=22.11 E-value=5.6e+02 Score=26.17 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 035544 261 ADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 261 qeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.+.++.+.+|+.||..||..|.-
T Consensus 156 ~~~qe~i~qL~~EN~~LRelL~I 178 (181)
T PF05769_consen 156 QEEQEIIAQLETENKGLRELLQI 178 (181)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhh
Confidence 46788999999999999999864
No 463
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.09 E-value=3.3e+02 Score=31.73 Aligned_cols=61 Identities=20% Similarity=0.144 Sum_probs=32.8
Q ss_pred CChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 217 LGEEEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 217 eeEkEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.+.+.-||.-|. +.|.|...-+.+--+.||.+ .+.....+|+++...+..-|.+++++|++
T Consensus 51 c~~katkr~i~~----e~alR~qa~dt~~~~rle~q--~~T~~ctree~t~k~~~~lt~e~~~~lqq 111 (463)
T KOG1645|consen 51 CSGKATKRQIRP----EYALRVQAMDTENEQRLEEQ--RRTHTCTREEKTNKEHVELTAELRAQLQQ 111 (463)
T ss_pred cCChhHHHHHHH----HHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHHHHHHhhhHHHHHhhhh
Confidence 344555555554 34444444444444444444 33344455555556666667777777776
No 464
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=22.04 E-value=1.3e+02 Score=26.09 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 261 ADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 261 qeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
.+|..+|..|++|+..+++.+...
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888887663
No 465
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=21.94 E-value=2.4e+02 Score=30.39 Aligned_cols=33 Identities=12% Similarity=0.230 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHhccCCC
Q 035544 255 NMHSTIADLNSKISF---FMAENASLKQQLSGSNAM 287 (727)
Q Consensus 255 ~LEsENqeLr~qls~---LqaEN~~LRqQL~~~~a~ 287 (727)
.+..||++|++++.. ++.+...|+++..+++..
T Consensus 70 ~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~l 105 (284)
T COG1792 70 DLALENEELKKELAELEQLLEEVESLEEENKRLKEL 105 (284)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666665543 355566666666664444
No 466
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=21.93 E-value=5.8e+02 Score=27.96 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=29.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 227 RLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMA 272 (727)
Q Consensus 227 RllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~Lqa 272 (727)
-+.+.+..++.-+.|-..-...||.-++.|+.+|..|......+..
T Consensus 54 ~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~ 99 (309)
T PF09728_consen 54 QLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAR 99 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666677777777787777777655544433
No 467
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=21.91 E-value=1.7e+02 Score=33.94 Aligned_cols=39 Identities=36% Similarity=0.311 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 235 AQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAE 273 (727)
Q Consensus 235 AqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaE 273 (727)
-+..|+|||..+++||.-|+--++|-.-.+.+....+.|
T Consensus 341 ~~~~~~~kk~~~eeLESIVRiKqAEA~MFQ~kAdEARrE 379 (446)
T PF07227_consen 341 LQFERQRKKPQIEELESIVRIKQAEAKMFQLKADEARRE 379 (446)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999998765444443333333333333
No 468
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=21.91 E-value=3.8e+02 Score=27.57 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 256 MHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 256 LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
|..++.+|+.++..|+.|+..|++++..
T Consensus 109 ~~~e~~kl~~~~e~L~~e~~~L~~~~~~ 136 (170)
T PRK13923 109 LSEQIGKLQEEEEKLSWENQTLKQELAI 136 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777776543
No 469
>PRK14157 heat shock protein GrpE; Provisional
Probab=21.85 E-value=1.8e+02 Score=30.99 Aligned_cols=18 Identities=0% Similarity=0.169 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 035544 249 LEDKVRNMHSTIADLNSK 266 (727)
Q Consensus 249 LE~KVk~LEsENqeLr~q 266 (727)
|..++..+..+...++++
T Consensus 96 ~kd~llR~~AEfeNyRKR 113 (227)
T PRK14157 96 YLEALQRERAEFINYRNR 113 (227)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444433
No 470
>PTZ00464 SNF-7-like protein; Provisional
Probab=21.83 E-value=6.9e+02 Score=26.20 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 035544 232 RESAQLSRQRKKHYVEELEDK 252 (727)
Q Consensus 232 RESAqrSRqRKKqYVeeLE~K 252 (727)
|..|.++=+|||.|-..|+.-
T Consensus 60 K~~Al~~LK~KK~~E~ql~~l 80 (211)
T PTZ00464 60 KQRAMQLLQQKRMYQNQQDMM 80 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777878888887766553
No 471
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=21.83 E-value=1.9e+02 Score=34.01 Aligned_cols=39 Identities=18% Similarity=0.360 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 241 RKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQ 279 (727)
Q Consensus 241 RKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRq 279 (727)
.....++++++++..|.++.++|+++++.++++...|+-
T Consensus 90 ~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~ 128 (646)
T PRK05771 90 DVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEP 128 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 335577888888888888888888888888877776664
No 472
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=21.82 E-value=3.5e+02 Score=24.50 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhcc
Q 035544 247 EELEDKVRNMHSTIADLNSKISFF-----------MAENASLKQQLSGS 284 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~L-----------qaEN~~LRqQL~~~ 284 (727)
+++|.++..--+|++.++..+-.| +.|...||.+|...
T Consensus 28 ~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 28 DEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555445555555555544 66777777777653
No 473
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=21.82 E-value=5.3e+02 Score=26.59 Aligned_cols=41 Identities=7% Similarity=0.093 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
--|++.||+--+++--.|-.=+++...|+.--+.||+.+..
T Consensus 66 ~~~~~~~dE~q~qrv~anvrerqRtqsLn~AF~~lr~iipt 106 (173)
T KOG4447|consen 66 TDSIQSLDELQKQRVMANVRERQRTQSLNEAFAALRKIIPT 106 (173)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCC
Confidence 34677776655555555656666777788888888887655
No 474
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=21.82 E-value=4.2e+02 Score=33.67 Aligned_cols=8 Identities=25% Similarity=0.472 Sum_probs=4.0
Q ss_pred hhhhhhhh
Q 035544 499 VLASEKAM 506 (727)
Q Consensus 499 vlaseka~ 506 (727)
.=..|||+
T Consensus 1067 LSGGEKsL 1074 (1163)
T COG1196 1067 LSGGEKSL 1074 (1163)
T ss_pred cCCcHHHH
Confidence 33446655
No 475
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=21.80 E-value=2.8e+02 Score=30.68 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQ 279 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRq 279 (727)
..++.|+.+.+.|..+...++.++..++.++..|+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 15 EQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 356778888888888888888888888888887775
No 476
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=21.75 E-value=2.4e+02 Score=30.75 Aligned_cols=48 Identities=8% Similarity=0.102 Sum_probs=30.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 223 KRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFF 270 (727)
Q Consensus 223 KR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~L 270 (727)
|..|+.+.+.++.-+.++-....+..||+++..+|.++.-.+.++..+
T Consensus 144 R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~ 191 (271)
T PF13805_consen 144 RDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNI 191 (271)
T ss_dssp HHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 444455666665544444444478889999888888777666555543
No 477
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=21.74 E-value=5.7e+02 Score=26.18 Aligned_cols=65 Identities=32% Similarity=0.327 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 219 EEEMKRKARLMRNRESAQLSR-----QRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 219 EkEeKR~RRllRNRESAqrSR-----qRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+++..|.++-.|-|+.|+.+| +|=.+.-++||.-.-=+.++...++.+|.....|...|.+-...
T Consensus 40 EeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqK 109 (159)
T PF04949_consen 40 EEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQK 109 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHH
No 478
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=21.70 E-value=4.9e+02 Score=29.81 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=30.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 229 MRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 229 lRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
..+|+.-....+|=++.-+.|++.-+.|.++..+|..++...+.+...++.+|..
T Consensus 313 ~~~~~~k~~~~~ki~~~e~~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~e~~l~~ 367 (373)
T COG5019 313 EEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEK 367 (373)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334443444444444444444444455556666777777777777777777665
No 479
>COG4420 Predicted membrane protein [Function unknown]
Probab=21.61 E-value=3.2e+02 Score=28.68 Aligned_cols=58 Identities=17% Similarity=0.326 Sum_probs=36.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 228 LMRNRESAQLSRQRKKHYVEE--LEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 228 llRNRESAqrSRqRKKqYVee--LE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
+-+||.+++---.=+..|--. -|.++..|..+..+|+..+-.+..|+..||+.+....
T Consensus 109 mSQNRQa~rDr~~a~~d~qvnlkaE~e~~~l~~kLd~lr~~lg~~~~~l~~lre~l~~i~ 168 (191)
T COG4420 109 MSQNRQAERDRLRAELDYQVNLKAEQEVAALHEKLDELRLDLGYVRDELDDLRELLAEIE 168 (191)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhchHHHHHHHHHhC
Confidence 556777655433333333333 3445667777777777777777778888888877643
No 480
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.59 E-value=1.5e+02 Score=32.03 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAEN 274 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN 274 (727)
+.+||.++..|+.++.+|+. ++.++.+|
T Consensus 58 ~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~ 85 (262)
T COG1729 58 LTQLEQQLRQLQGKIEELRG-IQELQYQN 85 (262)
T ss_pred cHHHHHHHHHHHhhHHHHHh-HHHHHHHH
Confidence 46666777777766666665 55555555
No 481
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=21.57 E-value=4.5e+02 Score=27.51 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=15.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 035544 223 KRKARLMRNRESAQLSRQRKKHYVEELEDK 252 (727)
Q Consensus 223 KR~RRllRNRESAqrSRqRKKqYVeeLE~K 252 (727)
|+--+.+.+-.+|...|.||- +.+||.+
T Consensus 94 k~~q~Rm~~qL~~aE~rhrr~--i~eLe~E 121 (192)
T PF09727_consen 94 KKMQRRMLEQLAAAEKRHRRT--IQELEEE 121 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 333445555556667776665 5566554
No 482
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=21.54 E-value=2.1e+02 Score=26.99 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 035544 238 SRQRKKHYVEELEDK 252 (727)
Q Consensus 238 SRqRKKqYVeeLE~K 252 (727)
.|++-++.|+.|-.+
T Consensus 66 ~r~~EkEqL~~Lk~k 80 (100)
T PF04568_consen 66 FRKKEKEQLKKLKEK 80 (100)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 483
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=21.50 E-value=2.5e+02 Score=24.93 Aligned_cols=29 Identities=31% Similarity=0.365 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 255 NMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 255 ~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
..+...+.|+.+.+....+|..|+.++..
T Consensus 25 ~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~ 53 (70)
T PF04899_consen 25 EWQSSYADLQHMFEQTSQENAALSEQVNN 53 (70)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444555555555555555555555443
No 484
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=21.45 E-value=4.4e+02 Score=32.66 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=35.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 229 MRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 229 lRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.+||.-.-..|+|...|+..++.--..|...-+.+-++-..++.||..|.++|+.
T Consensus 569 k~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqa 623 (961)
T KOG4673|consen 569 KENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQA 623 (961)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455544466777777776666655555555555566666677778888777766
No 485
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.31 E-value=1.1e+02 Score=32.04 Aligned_cols=58 Identities=22% Similarity=0.393 Sum_probs=37.8
Q ss_pred HHHHhHHH-------HHHHHHHHHHHHHHHHHHHHH--HH---------HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 227 RLMRNRES-------AQLSRQRKKHYVEELEDKVRN--MH---------STIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 227 RllRNRES-------AqrSRqRKKqYVeeLE~KVk~--LE---------sENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
.++.||+. ||.--+|.-.|+--+-..|.. +. .--.+|+.+++.|+.|...||++|..+
T Consensus 136 e~La~R~~gplvv~l~RepGkREsRymhLf~g~vd~aa~a~~~~~~a~a~~s~dlearv~aLe~eva~L~~rld~l 211 (215)
T COG3132 136 ERLANREDGPLVVRLAREPGKRESRYMHLFSGEVDDAAVAQPAETDAPAAASSDLEARVEALEQEVAELRARLDSL 211 (215)
T ss_pred HHHhcCCCCceeeecCCCCCcchhhhhhhhcchhhhhhhcCcccccCcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567764 555566777777766655544 11 112348888888888888888888764
No 486
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=21.25 E-value=4.9e+02 Score=21.71 Aligned_cols=56 Identities=16% Similarity=0.181 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhccCCC
Q 035544 232 RESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFF---------MAENASLKQQLSGSNAM 287 (727)
Q Consensus 232 RESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~L---------qaEN~~LRqQL~~~~a~ 287 (727)
|.+-.....|+++|.+.++.+.+.--.+-..|-.++..| ..+...|+++=...+.+
T Consensus 8 ~~a~~~~~~~~~~~~~~~~~~~~~n~~~K~~Li~~~~~l~~~~d~~~~~~~~k~l~~~Wk~iG~v 72 (77)
T PF03993_consen 8 RAACDAFFDRRKEFFEEQDAEREENLEKKEALIEEAEALAESEDWKEAAEEIKELQQEWKEIGPV 72 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCC
Confidence 455566667777777776666554444444444444443 44455555555555544
No 487
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=21.24 E-value=5.5e+02 Score=32.85 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 233 ESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 233 ESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+.|+.......+-+..++.+...++.+..+...++..++.+...|++++..
T Consensus 479 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 529 (1201)
T PF12128_consen 479 EQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAE 529 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566666666666666666665555555555555555555554
No 488
>PRK14145 heat shock protein GrpE; Provisional
Probab=21.19 E-value=2.5e+02 Score=29.24 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 248 ELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 248 eLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
.|+.++..++.+..+|+.++..+.+|...+|.++.
T Consensus 49 ~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~ 83 (196)
T PRK14145 49 ELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTE 83 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443
No 489
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=21.18 E-value=6.6e+02 Score=24.98 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035544 263 LNSKISFFMAENASLKQQL 281 (727)
Q Consensus 263 Lr~qls~LqaEN~~LRqQL 281 (727)
|+.++..+..+...|...|
T Consensus 57 L~~el~~lt~el~~L~~EL 75 (140)
T PF10473_consen 57 LEEELEELTSELNQLELEL 75 (140)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333
No 490
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=21.08 E-value=4.7e+02 Score=29.58 Aligned_cols=34 Identities=12% Similarity=0.282 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASL 277 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~L 277 (727)
+.++.|......|.++.++|+.++..|+++...+
T Consensus 375 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444555555555555555555555544444
No 491
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=20.94 E-value=3.2e+02 Score=26.91 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.+-|..|+.+.+.|...+..+++-...=+.....||+||..
T Consensus 84 dETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~ 124 (126)
T PF13118_consen 84 DETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKI 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444444444444444444444446667888888864
No 492
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=20.93 E-value=2.4e+02 Score=33.03 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 035544 258 STIADLNSKISFFMAENASLKQQLSGSNA 286 (727)
Q Consensus 258 sENqeLr~qls~LqaEN~~LRqQL~~~~a 286 (727)
.+++.|+.|+..|+.+..+||.+|....+
T Consensus 25 ~~i~~L~~ql~aLq~~v~eL~~~laa~~~ 53 (514)
T PF11336_consen 25 DQIKALQAQLQALQDQVNELRAKLAAKPA 53 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 47788889999999999999999887444
No 493
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=20.93 E-value=6.5e+02 Score=23.04 Aligned_cols=37 Identities=14% Similarity=0.078 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 237 LSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAE 273 (727)
Q Consensus 237 rSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaE 273 (727)
.-=.|-+.++..|..++..+...|..|+.+...++..
T Consensus 19 eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 19 EEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS 55 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3446677777888888888877777777777766665
No 494
>PRK02224 chromosome segregation protein; Provisional
Probab=20.91 E-value=5.7e+02 Score=30.89 Aligned_cols=11 Identities=18% Similarity=0.099 Sum_probs=5.9
Q ss_pred ccccCCCccCC
Q 035544 386 VDVKYGGIRDG 396 (727)
Q Consensus 386 vn~~~g~~~~~ 396 (727)
++-.+++++..
T Consensus 817 lDEp~~~lD~~ 827 (880)
T PRK02224 817 LDEPTVFLDSG 827 (880)
T ss_pred ecCCcccCCHH
Confidence 34466666554
No 495
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=20.81 E-value=3.9e+02 Score=33.04 Aligned_cols=32 Identities=25% Similarity=0.534 Sum_probs=25.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 227 RLMRNRESAQLSRQRKKHYVEELEDKVRNMHS 258 (727)
Q Consensus 227 RllRNRESAqrSRqRKKqYVeeLE~KVk~LEs 258 (727)
|.++--+=|+.+++.||+|++||+=+++-|++
T Consensus 414 ~~l~ksq~~kl~k~q~k~y~de~dyr~kl~~k 445 (763)
T TIGR00993 414 KPLTKAQMAKLSKEQRKAYLEEYDYRVKLLQK 445 (763)
T ss_pred ccccHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444566889999999999999999887653
No 496
>PRK14153 heat shock protein GrpE; Provisional
Probab=20.76 E-value=2.3e+02 Score=29.39 Aligned_cols=21 Identities=10% Similarity=0.417 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSK 266 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~q 266 (727)
+++|+.++..+.++...++++
T Consensus 49 ~~elkd~~lR~~AEfeN~rKR 69 (194)
T PRK14153 49 IESLKEQLFRLAAEFDNFRKR 69 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 497
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=20.73 E-value=4.6e+02 Score=27.65 Aligned_cols=59 Identities=15% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 223 KRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 223 KR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
++..++..-=+.+.+.|...++..++|+.++..|..+.+.|+.++..++.-+......+
T Consensus 95 qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~ 153 (203)
T KOG3433|consen 95 QKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKK 153 (203)
T ss_pred hhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
No 498
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=20.68 E-value=1.2e+02 Score=27.81 Aligned_cols=27 Identities=37% Similarity=0.404 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035544 262 DLNSKISFFMAENASLKQQLSGSNAMP 288 (727)
Q Consensus 262 eLr~qls~LqaEN~~LRqQL~~~~a~p 288 (727)
.|-.++++|++|++.|+++|...-..|
T Consensus 75 ~LLd~i~~Lr~el~~L~~~l~~~~~~~ 101 (101)
T PRK10265 75 TLLDEIAHLKQENRLLRQRLSRFVAHP 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
No 499
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.65 E-value=3.1e+02 Score=26.20 Aligned_cols=49 Identities=12% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 235 AQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 235 AqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+-+...++.+....||+++++.+.+..+.+.++..-=++.+.|-.+|..
T Consensus 16 ~~r~~~~~~~~q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~ 64 (128)
T PF06295_consen 16 IGRLTSSNQQKQAKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQ 64 (128)
T ss_pred HHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=20.57 E-value=9.1e+02 Score=24.97 Aligned_cols=63 Identities=22% Similarity=0.131 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 035544 219 EEEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAE-NASLKQQL 281 (727)
Q Consensus 219 EkEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaE-N~~LRqQL 281 (727)
.+-+|-+.++.+-+.+|.+++..-+..|+.|+.--...+.+-...-..++.|+.+ ...||..|
T Consensus 153 ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l 216 (239)
T cd07647 153 KEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWESEHATACQVFQNMEEERIKFLRNAL 216 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!