Query 035544
Match_columns 727
No_of_seqs 210 out of 1107
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 05:51:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035544.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035544hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t2k_D Cyclic-AMP-dependent tr 99.5 9.9E-14 3.4E-18 113.0 9.3 60 223-282 1-60 (61)
2 2wt7_A Proto-oncogene protein 99.5 1.4E-13 4.7E-18 113.2 9.6 63 222-284 1-63 (63)
3 1jnm_A Proto-oncogene C-JUN; B 99.5 9.2E-14 3.1E-18 113.6 7.0 62 223-284 1-62 (62)
4 1dh3_A Transcription factor CR 99.3 1.2E-12 3.9E-17 105.7 6.9 51 223-273 1-51 (55)
5 1ci6_A Transcription factor AT 99.2 1.7E-11 5.8E-16 101.1 7.5 61 223-283 2-62 (63)
6 2dgc_A Protein (GCN4); basic d 99.1 1.7E-10 5.7E-15 95.5 6.8 51 223-273 9-59 (63)
7 1gu4_A CAAT/enhancer binding p 98.9 1.5E-09 5E-14 93.5 7.7 66 219-284 11-76 (78)
8 1hjb_A Ccaat/enhancer binding 98.9 3.8E-09 1.3E-13 92.7 9.7 67 218-284 10-76 (87)
9 1gd2_E Transcription factor PA 98.8 1.2E-08 4.2E-13 86.3 8.8 59 225-283 10-68 (70)
10 2wt7_B Transcription factor MA 98.4 1.7E-06 5.9E-11 76.5 10.1 69 216-284 20-88 (90)
11 3a5t_A Transcription factor MA 98.3 1.5E-08 5.1E-13 91.9 -4.5 64 216-279 30-93 (107)
12 2oqq_A Transcription factor HY 98.3 1.1E-06 3.6E-11 68.1 6.1 40 243-282 2-41 (42)
13 1skn_P DNA-binding domain of S 96.4 0.00091 3.1E-08 59.4 1.8 35 217-251 56-90 (92)
14 2c9l_Y EB1, zebra, BZLF1 trans 94.7 0.12 4E-06 42.6 7.8 39 226-264 4-42 (63)
15 2kz5_A Transcription factor NF 90.7 0.02 6.9E-07 50.9 -2.2 27 218-244 61-87 (91)
16 2yy0_A C-MYC-binding protein; 90.4 0.42 1.4E-05 38.5 5.3 33 251-283 19-51 (53)
17 3mq7_A Bone marrow stromal ant 89.1 1.4 4.8E-05 40.9 8.4 45 244-288 71-115 (121)
18 1gd2_E Transcription factor PA 88.9 1.2 4.1E-05 37.7 7.2 36 243-278 35-70 (70)
19 3oja_B Anopheles plasmodium-re 88.4 2.1 7.3E-05 46.0 10.7 50 235-284 528-577 (597)
20 1kd8_A GABH AIV, GCN4 acid bas 88.0 0.54 1.8E-05 35.6 4.0 30 245-274 2-31 (36)
21 2oxj_A Hybrid alpha/beta pepti 87.6 0.62 2.1E-05 34.9 4.1 26 245-270 2-27 (34)
22 1nkp_B MAX protein, MYC proto- 87.3 1.9 6.5E-05 36.4 7.6 35 253-287 49-83 (83)
23 1kd8_B GABH BLL, GCN4 acid bas 86.1 1.3 4.4E-05 33.6 5.1 28 245-272 2-29 (36)
24 3m48_A General control protein 86.0 0.75 2.6E-05 34.4 3.7 25 246-270 2-26 (33)
25 1hjb_A Ccaat/enhancer binding 85.2 5.4 0.00019 35.1 9.5 55 228-282 27-81 (87)
26 2jee_A YIIU; FTSZ, septum, coi 85.0 2.2 7.6E-05 37.3 6.9 40 243-282 26-65 (81)
27 3c3f_A Alpha/beta peptide with 84.2 1.2 4E-05 33.5 4.1 30 245-281 2-31 (34)
28 1dip_A Delta-sleep-inducing pe 83.9 1.8 6.3E-05 37.5 5.8 33 251-283 15-47 (78)
29 1nkp_B MAX protein, MYC proto- 83.4 1.2 4.2E-05 37.6 4.6 37 242-278 45-81 (83)
30 3he5_A Synzip1; heterodimeric 83.2 2.8 9.5E-05 33.0 6.0 38 245-282 4-48 (49)
31 2hy6_A General control protein 82.2 1.5 5E-05 33.0 3.9 26 245-270 2-27 (34)
32 3m91_A Proteasome-associated A 82.2 3.7 0.00013 33.1 6.6 42 244-285 9-50 (51)
33 3efg_A Protein SLYX homolog; x 82.1 3.5 0.00012 35.4 6.9 40 244-283 14-53 (78)
34 3c3g_A Alpha/beta peptide with 81.1 2.4 8.1E-05 31.7 4.7 25 246-270 2-26 (33)
35 3o0z_A RHO-associated protein 80.7 9.9 0.00034 37.1 10.3 56 228-283 74-129 (168)
36 1fmh_A General control protein 80.7 2.8 9.6E-05 30.7 4.8 28 246-273 3-30 (33)
37 2bni_A General control protein 80.6 1.8 6.1E-05 32.5 3.9 26 245-270 2-27 (34)
38 2wq1_A General control protein 80.5 2 6.7E-05 32.1 4.1 29 246-281 2-30 (33)
39 2w6a_A ARF GTPase-activating p 79.7 2.6 8.9E-05 35.2 5.0 34 246-279 29-62 (63)
40 3m9b_A Proteasome-associated A 78.9 1.7 5.8E-05 44.7 4.5 45 243-287 53-97 (251)
41 1nlw_A MAD protein, MAX dimeri 78.7 7.6 0.00026 33.2 7.8 34 243-283 46-79 (80)
42 3i00_A HIP-I, huntingtin-inter 78.6 18 0.00061 33.4 10.8 58 228-285 24-81 (120)
43 1uo4_A General control protein 78.6 2.3 7.7E-05 32.0 3.9 30 245-281 2-31 (34)
44 1nlw_A MAD protein, MAX dimeri 78.3 3.5 0.00012 35.3 5.6 23 260-282 49-71 (80)
45 1nkp_A C-MYC, MYC proto-oncoge 77.6 4.1 0.00014 35.3 6.0 32 254-285 55-86 (88)
46 3efg_A Protein SLYX homolog; x 77.5 3.5 0.00012 35.4 5.4 41 245-285 22-62 (78)
47 3oja_B Anopheles plasmodium-re 77.4 7.9 0.00027 41.6 9.4 39 244-282 544-582 (597)
48 1gu4_A CAAT/enhancer binding p 77.3 16 0.00054 31.5 9.4 45 228-272 27-71 (78)
49 1nkp_A C-MYC, MYC proto-oncoge 77.2 6.5 0.00022 34.1 7.1 38 241-278 49-86 (88)
50 2jee_A YIIU; FTSZ, septum, coi 76.9 5.6 0.00019 34.8 6.6 35 245-279 7-41 (81)
51 3a7p_A Autophagy protein 16; c 72.8 26 0.0009 33.7 10.6 38 246-283 98-135 (152)
52 3nmd_A CGMP dependent protein 72.6 13 0.00043 32.0 7.5 26 260-285 42-67 (72)
53 3s4r_A Vimentin; alpha-helix, 71.4 30 0.001 30.3 9.9 40 242-281 54-93 (93)
54 3a2a_A Voltage-gated hydrogen 71.2 8.7 0.0003 31.7 5.9 43 246-288 13-55 (58)
55 2r2v_A GCN4 leucine zipper; co 70.6 5.2 0.00018 30.1 4.1 31 245-282 2-32 (34)
56 1am9_A Srebp-1A, protein (ster 70.1 29 0.001 29.5 9.3 56 228-283 7-75 (82)
57 1am9_A Srebp-1A, protein (ster 70.1 5.9 0.0002 33.8 5.0 29 242-270 48-76 (82)
58 2dfs_A Myosin-5A; myosin-V, in 69.8 15 0.00053 44.0 10.2 21 263-283 1021-1041(1080)
59 1kd8_B GABH BLL, GCN4 acid bas 69.3 6.5 0.00022 29.9 4.4 33 251-283 1-33 (36)
60 1gmj_A ATPase inhibitor; coile 69.2 24 0.00081 31.2 8.6 17 227-243 32-48 (84)
61 3he5_B Synzip2; heterodimeric 69.1 13 0.00044 29.5 6.3 36 249-284 15-50 (52)
62 2oqq_A Transcription factor HY 69.0 8.7 0.0003 30.1 5.2 25 244-268 17-41 (42)
63 3vmx_A Voltage-gated hydrogen 67.7 22 0.00076 28.5 7.4 40 247-286 7-46 (48)
64 3ra3_B P2F; coiled coil domain 67.3 4.1 0.00014 29.0 2.8 25 254-278 3-27 (28)
65 1fxk_A Prefoldin; archaeal pro 66.9 15 0.00052 31.4 7.1 42 242-283 63-104 (107)
66 2zqm_A Prefoldin beta subunit 66.9 14 0.00048 32.0 6.9 41 243-283 69-109 (117)
67 2j5u_A MREC protein; bacterial 66.6 2.2 7.5E-05 43.0 1.9 38 248-285 23-63 (255)
68 3swy_A Cyclic nucleotide-gated 66.5 13 0.00045 29.4 5.9 36 248-283 2-41 (46)
69 3m9b_A Proteasome-associated A 66.1 5.4 0.00019 41.0 4.6 40 241-280 58-97 (251)
70 2lz1_A Nuclear factor erythroi 65.5 0.12 4.1E-06 45.9 -6.5 25 220-244 63-87 (90)
71 2xdj_A Uncharacterized protein 65.3 60 0.0021 28.2 10.4 34 247-280 23-56 (83)
72 3u1c_A Tropomyosin alpha-1 cha 65.1 64 0.0022 28.4 10.8 49 233-281 19-67 (101)
73 1zme_C Proline utilization tra 64.9 5.2 0.00018 31.7 3.4 25 243-267 43-67 (70)
74 4dzn_A Coiled-coil peptide CC- 64.8 12 0.0004 27.5 4.8 29 252-280 3-31 (33)
75 4etp_A Kinesin-like protein KA 64.3 7.2 0.00025 41.8 5.4 39 245-283 18-56 (403)
76 3mq9_A Bone marrow stromal ant 63.7 27 0.00092 36.8 9.5 34 249-282 434-467 (471)
77 2dfs_A Myosin-5A; myosin-V, in 63.5 26 0.0009 42.1 10.4 29 244-272 1016-1044(1080)
78 2oxj_A Hybrid alpha/beta pepti 62.9 9.9 0.00034 28.6 4.3 32 252-283 2-33 (34)
79 2oa5_A Hypothetical protein BQ 62.8 3.8 0.00013 37.7 2.5 26 261-286 11-36 (110)
80 2ve7_C Kinetochore protein NUF 62.7 8.5 0.00029 38.9 5.3 62 220-281 117-178 (250)
81 1kd8_A GABH AIV, GCN4 acid bas 62.4 7.7 0.00026 29.5 3.6 32 252-283 2-33 (36)
82 1ytz_T Troponin T; muscle, THI 62.3 65 0.0022 29.2 10.4 42 247-288 52-93 (107)
83 3s9g_A Protein hexim1; cyclin 61.8 31 0.0011 31.4 8.1 21 263-283 70-90 (104)
84 1dip_A Delta-sleep-inducing pe 61.1 7.8 0.00027 33.7 4.0 25 243-267 21-45 (78)
85 3c3f_A Alpha/beta peptide with 60.3 11 0.00039 28.3 4.2 24 261-284 4-27 (34)
86 2xdj_A Uncharacterized protein 59.8 47 0.0016 28.8 8.7 60 224-283 7-66 (83)
87 3m48_A General control protein 59.4 9.1 0.00031 28.6 3.5 30 253-282 2-31 (33)
88 3nmd_A CGMP dependent protein 59.4 15 0.0005 31.6 5.3 31 241-271 37-67 (72)
89 3ghg_A Fibrinogen alpha chain; 59.0 12 0.0004 42.2 6.0 44 237-280 103-146 (562)
90 3hnw_A Uncharacterized protein 58.8 78 0.0027 29.5 10.7 7 271-277 116-122 (138)
91 2dgc_A Protein (GCN4); basic d 58.8 11 0.00038 31.0 4.4 27 255-281 34-60 (63)
92 3swf_A CGMP-gated cation chann 58.6 14 0.00047 32.0 5.1 37 247-283 3-43 (74)
93 1zxa_A CGMP-dependent protein 58.6 12 0.00043 31.6 4.8 32 241-272 22-53 (67)
94 3oja_A Leucine-rich immune mol 58.6 47 0.0016 35.1 10.4 46 234-279 425-470 (487)
95 2wuj_A Septum site-determining 58.5 8.8 0.0003 30.9 3.7 29 244-272 27-55 (57)
96 1deb_A APC protein, adenomatou 58.4 23 0.0008 28.8 6.0 37 247-283 6-49 (54)
97 3he4_B Synzip5; heterodimeric 58.4 24 0.00083 27.4 5.9 32 242-273 8-39 (46)
98 3u06_A Protein claret segregat 57.8 13 0.00045 40.0 6.0 45 242-286 15-59 (412)
99 1a93_B MAX protein, coiled coi 57.7 16 0.00054 27.6 4.6 27 256-282 5-31 (34)
100 3ljm_A Coil Ser L9C; de novo d 57.6 15 0.00052 26.6 4.3 26 246-271 3-28 (31)
101 1ic2_A Tropomyosin alpha chain 57.6 86 0.0029 26.4 10.4 48 234-281 17-64 (81)
102 3mq7_A Bone marrow stromal ant 56.8 29 0.001 32.3 7.2 33 251-283 71-103 (121)
103 2wq1_A General control protein 56.8 15 0.0005 27.6 4.2 22 262-283 4-25 (33)
104 4emc_A Monopolin complex subun 55.9 11 0.00039 37.4 4.7 41 245-285 14-54 (190)
105 3q8t_A Beclin-1; autophagy, AT 55.7 93 0.0032 27.4 10.1 60 223-282 25-84 (96)
106 3iot_A Maltose-binding protein 55.3 7.9 0.00027 40.0 3.7 20 262-281 379-398 (449)
107 1wt6_A Myotonin-protein kinase 55.3 82 0.0028 27.7 9.4 47 231-277 14-71 (81)
108 3vkg_A Dynein heavy chain, cyt 54.8 32 0.0011 46.0 9.8 48 223-270 2014-2061(3245)
109 1dh3_A Transcription factor CR 54.5 12 0.0004 30.1 3.8 29 258-286 22-50 (55)
110 3c3g_A Alpha/beta peptide with 54.0 17 0.00058 27.2 4.2 30 253-282 2-31 (33)
111 2hy6_A General control protein 53.9 18 0.00063 27.2 4.4 32 252-283 2-33 (34)
112 3s9g_A Protein hexim1; cyclin 53.9 54 0.0018 29.9 8.3 30 251-280 65-94 (104)
113 3ra3_A P1C; coiled coil domain 53.8 14 0.00048 26.3 3.5 25 255-279 4-28 (28)
114 3s4r_A Vimentin; alpha-helix, 53.3 29 0.00098 30.5 6.4 27 256-282 54-80 (93)
115 1uo4_A General control protein 53.1 14 0.00049 27.8 3.7 24 261-284 4-27 (34)
116 1gmj_A ATPase inhibitor; coile 53.1 87 0.003 27.6 9.3 52 229-283 22-76 (84)
117 3hnw_A Uncharacterized protein 52.1 68 0.0023 29.9 9.1 21 259-279 111-131 (138)
118 2v71_A Nuclear distribution pr 52.1 1E+02 0.0034 30.6 10.7 55 229-283 27-81 (189)
119 2er8_A Regulatory protein Leu3 51.9 7.3 0.00025 31.2 2.3 23 242-264 47-69 (72)
120 1go4_E MAD1 (mitotic arrest de 51.4 71 0.0024 28.9 8.7 52 234-285 23-95 (100)
121 1jcd_A Major outer membrane li 51.4 28 0.00095 28.1 5.5 29 246-274 6-34 (52)
122 2akf_A Coronin-1A; coiled coil 51.2 17 0.0006 26.7 3.8 27 248-274 3-29 (32)
123 1jnm_A Proto-oncogene C-JUN; B 50.5 80 0.0027 25.4 8.2 33 253-285 24-56 (62)
124 1l8d_A DNA double-strand break 50.4 48 0.0016 28.7 7.4 39 244-282 64-102 (112)
125 1p9i_A Cortexillin I/GCN4 hybr 50.2 19 0.00066 26.1 3.9 25 248-272 3-27 (31)
126 3qh9_A Liprin-beta-2; coiled-c 49.5 42 0.0014 29.5 6.7 38 245-282 27-64 (81)
127 1lwu_C Fibrinogen gamma chain; 48.7 32 0.0011 36.4 7.0 39 245-283 13-51 (323)
128 2r2v_A GCN4 leucine zipper; co 48.3 27 0.00094 26.3 4.6 21 262-282 5-25 (34)
129 2bni_A General control protein 48.1 17 0.00059 27.3 3.5 31 252-282 2-32 (34)
130 3mq9_A Bone marrow stromal ant 47.9 71 0.0024 33.6 9.6 27 257-283 435-461 (471)
131 3cvf_A Homer-3, homer protein 46.8 47 0.0016 28.9 6.6 13 271-283 61-73 (79)
132 1hlo_A Protein (transcription 45.8 16 0.00054 30.7 3.4 21 260-280 59-79 (80)
133 3cve_A Homer protein homolog 1 45.8 52 0.0018 28.2 6.6 13 271-283 55-67 (72)
134 3lay_A Zinc resistance-associa 45.7 76 0.0026 30.8 8.6 26 259-284 114-143 (175)
135 1deb_A APC protein, adenomatou 45.5 21 0.00073 29.0 3.9 24 260-283 5-28 (54)
136 3w03_C DNA repair protein XRCC 45.3 43 0.0015 33.0 6.9 39 244-282 145-183 (184)
137 2zxx_A Geminin; coiled-coil, c 44.9 45 0.0015 29.1 6.2 26 255-280 38-63 (79)
138 2yy0_A C-MYC-binding protein; 44.8 19 0.00066 28.9 3.6 22 247-268 29-50 (53)
139 1jcd_A Major outer membrane li 44.3 65 0.0022 26.0 6.6 30 252-281 5-34 (52)
140 1fxk_C Protein (prefoldin); ar 44.1 47 0.0016 29.7 6.5 35 246-280 97-131 (133)
141 2fxo_A Myosin heavy chain, car 43.9 1E+02 0.0035 28.0 8.7 40 244-283 83-122 (129)
142 3oa7_A Head morphogenesis prot 43.7 47 0.0016 33.4 6.9 59 226-287 15-73 (206)
143 2w6a_A ARF GTPase-activating p 43.2 66 0.0022 27.0 6.6 38 246-283 22-59 (63)
144 1go4_E MAD1 (mitotic arrest de 42.5 43 0.0015 30.3 5.9 29 245-273 13-41 (100)
145 2wt7_B Transcription factor MA 42.2 1.2E+02 0.0042 26.8 8.6 48 236-283 29-80 (90)
146 3q0x_A Centriole protein; cent 42.0 95 0.0032 31.5 8.9 56 223-284 163-218 (228)
147 3he4_A Synzip6; heterodimeric 41.8 58 0.002 26.2 5.8 36 246-281 19-54 (56)
148 3u59_A Tropomyosin beta chain; 41.8 1.8E+02 0.006 25.4 10.8 16 242-257 42-57 (101)
149 1wle_A Seryl-tRNA synthetase; 41.8 1E+02 0.0034 34.2 9.9 32 252-283 117-148 (501)
150 1l8d_A DNA double-strand break 41.7 55 0.0019 28.3 6.4 42 244-285 3-44 (112)
151 3cvf_A Homer-3, homer protein 41.6 63 0.0022 28.1 6.6 33 249-281 25-57 (79)
152 3u06_A Protein claret segregat 41.4 71 0.0024 34.4 8.5 14 576-589 336-349 (412)
153 3o0z_A RHO-associated protein 41.3 94 0.0032 30.4 8.5 36 247-282 44-79 (168)
154 2wvr_A Geminin; DNA replicatio 41.3 59 0.002 32.8 7.2 26 245-270 123-148 (209)
155 3kin_B Kinesin heavy chain; mo 40.6 34 0.0012 31.0 5.0 27 252-278 90-116 (117)
156 1wlq_A Geminin; coiled-coil; 2 40.5 62 0.0021 28.5 6.4 24 256-279 43-66 (83)
157 2oa5_A Hypothetical protein BQ 40.0 15 0.0005 33.9 2.5 25 244-268 8-32 (110)
158 4ati_A MITF, microphthalmia-as 39.8 16 0.00055 33.2 2.8 38 244-285 74-111 (118)
159 1uii_A Geminin; human, DNA rep 39.7 54 0.0019 28.9 5.9 26 255-280 50-75 (83)
160 1m1j_C Fibrinogen gamma chain; 39.3 59 0.002 35.3 7.5 42 245-286 92-133 (409)
161 2v4h_A NF-kappa-B essential mo 38.3 76 0.0026 29.2 6.9 38 245-282 63-107 (110)
162 1uii_A Geminin; human, DNA rep 37.7 1.1E+02 0.0036 27.1 7.4 26 258-283 46-71 (83)
163 3na7_A HP0958; flagellar bioge 37.4 1.6E+02 0.0054 29.2 9.7 6 412-417 229-234 (256)
164 3a7o_A Autophagy protein 16; c 37.3 1.6E+02 0.0056 25.4 8.2 45 241-285 29-73 (75)
165 2wg5_A General control protein 37.3 22 0.00075 31.8 3.2 28 252-279 8-35 (109)
166 3q8t_A Beclin-1; autophagy, AT 37.0 1.6E+02 0.0053 25.9 8.5 32 239-270 20-51 (96)
167 1ci6_A Transcription factor AT 36.6 1.2E+02 0.0043 24.6 7.3 29 244-272 30-58 (63)
168 1i84_S Smooth muscle myosin he 36.5 34 0.0012 41.1 5.6 15 256-270 918-932 (1184)
169 1fmh_A General control protein 36.4 13 0.00046 27.2 1.3 26 260-285 3-28 (33)
170 1t2k_D Cyclic-AMP-dependent tr 36.3 61 0.0021 26.0 5.4 24 247-270 32-55 (61)
171 4ani_A Protein GRPE; chaperone 36.2 56 0.0019 32.7 6.2 39 245-283 60-98 (213)
172 4b4t_K 26S protease regulatory 36.2 58 0.002 35.2 6.8 40 246-285 51-90 (428)
173 4abm_A Charged multivesicular 36.1 52 0.0018 28.2 5.2 23 228-250 40-62 (79)
174 4b4t_J 26S protease regulatory 35.9 57 0.0019 35.3 6.7 45 242-286 23-67 (405)
175 2lw1_A ABC transporter ATP-bin 35.7 1E+02 0.0036 26.2 7.1 22 246-267 24-45 (89)
176 1ses_A Seryl-tRNA synthetase; 35.6 47 0.0016 35.7 6.0 30 254-283 67-96 (421)
177 1f5n_A Interferon-induced guan 35.4 1.9E+02 0.0066 32.6 11.0 16 237-252 505-520 (592)
178 4dyl_A Tyrosine-protein kinase 35.0 2.8E+02 0.0096 29.2 11.7 55 234-288 320-396 (406)
179 1fzc_C Fibrin; blood coagulati 34.7 15 0.0005 38.8 1.9 40 245-284 5-44 (319)
180 2aze_A Transcription factor DP 34.2 1.3E+02 0.0043 29.2 8.0 18 239-256 21-38 (155)
181 3mud_A DNA repair protein XRCC 34.0 80 0.0028 31.0 6.7 39 235-273 133-171 (175)
182 2dq0_A Seryl-tRNA synthetase; 33.9 62 0.0021 35.2 6.6 30 254-283 72-101 (455)
183 4b4t_L 26S protease subunit RP 33.9 38 0.0013 36.8 4.9 38 242-279 63-100 (437)
184 3htk_A Structural maintenance 33.6 1.5E+02 0.0053 23.1 7.3 24 258-281 33-56 (60)
185 3plt_A Sphingolipid long chain 33.6 2.1E+02 0.0071 29.2 9.9 24 225-248 95-119 (234)
186 4etp_A Kinesin-like protein KA 33.4 1E+02 0.0035 33.0 8.1 47 237-283 17-63 (403)
187 3ol1_A Vimentin; structural ge 33.4 98 0.0034 28.0 6.9 22 259-280 70-91 (119)
188 1t6f_A Geminin; coiled-coil, c 33.3 72 0.0025 24.4 4.8 24 255-278 11-34 (37)
189 3lay_A Zinc resistance-associa 33.2 2.8E+02 0.0096 26.9 10.4 19 265-283 113-131 (175)
190 1fxk_C Protein (prefoldin); ar 32.7 1E+02 0.0036 27.4 6.9 23 251-273 95-117 (133)
191 2z5i_A TM, general control pro 32.7 1.2E+02 0.0041 24.2 6.4 37 247-283 8-44 (52)
192 3trt_A Vimentin; cytoskeleton, 32.4 2.1E+02 0.0071 23.5 10.1 49 227-278 21-76 (77)
193 3oja_A Leucine-rich immune mol 32.4 2.3E+02 0.0078 29.9 10.5 34 237-270 435-468 (487)
194 1i84_S Smooth muscle myosin he 32.3 1E+02 0.0035 37.0 8.7 23 261-283 916-938 (1184)
195 3qne_A Seryl-tRNA synthetase, 32.2 77 0.0026 35.2 7.1 29 255-283 75-103 (485)
196 4emc_A Monopolin complex subun 31.6 67 0.0023 32.0 5.8 9 273-281 69-77 (190)
197 3m91_A Proteasome-associated A 31.5 91 0.0031 25.1 5.5 35 243-277 15-49 (51)
198 1j1d_B Troponin T, TNT; THIN f 31.5 1.2E+02 0.0041 27.5 7.0 45 243-287 48-92 (106)
199 2ve7_A Kinetochore protein HEC 31.0 63 0.0022 33.5 5.9 34 243-276 184-217 (315)
200 2v66_B Nuclear distribution pr 31.0 3.1E+02 0.011 25.1 9.9 33 246-278 37-69 (111)
201 2xzr_A Immunoglobulin-binding 30.8 3.1E+02 0.011 25.0 10.4 39 245-283 70-108 (114)
202 2gkw_A TNF receptor-associated 30.3 68 0.0023 30.3 5.5 31 246-276 2-32 (192)
203 1hlo_A Protein (transcription 30.2 98 0.0034 25.8 5.9 13 269-281 61-73 (80)
204 2v71_A Nuclear distribution pr 30.1 3.2E+02 0.011 27.0 10.3 22 260-281 90-111 (189)
205 3a7p_A Autophagy protein 16; c 30.0 3.4E+02 0.012 26.2 10.1 42 240-281 78-119 (152)
206 1a93_B MAX protein, coiled coi 29.2 72 0.0025 24.0 4.2 19 251-269 14-32 (34)
207 3cve_A Homer protein homolog 1 29.2 1.9E+02 0.0065 24.8 7.4 33 249-281 19-51 (72)
208 2zdi_C Prefoldin subunit alpha 28.9 69 0.0024 29.5 5.2 38 246-283 107-144 (151)
209 3iyn_Q Protein IX, PIX, hexon- 28.7 67 0.0023 30.4 5.0 26 261-286 108-133 (140)
210 2v4h_A NF-kappa-B essential mo 28.5 3.5E+02 0.012 24.9 10.4 57 227-283 28-101 (110)
211 3rrk_A V-type ATPase 116 kDa s 28.1 86 0.003 31.9 6.2 39 246-284 94-135 (357)
212 4h22_A Leucine-rich repeat fli 27.8 1.5E+02 0.005 27.1 6.9 46 243-288 36-88 (103)
213 1gk7_A Vimentin; intermediate 27.7 1.3E+02 0.0043 22.9 5.4 18 265-282 20-37 (39)
214 3vkg_A Dynein heavy chain, cyt 27.6 1.4E+02 0.0047 40.3 9.2 42 241-282 2025-2066(3245)
215 1f5n_A Interferon-induced guan 27.4 2.1E+02 0.0072 32.3 9.6 24 232-255 496-519 (592)
216 3lss_A Seryl-tRNA synthetase; 27.3 1.7E+02 0.0057 32.5 8.6 27 257-283 109-136 (484)
217 3pjs_K KCSA, voltage-gated pot 27.0 94 0.0032 28.8 5.8 27 241-267 135-161 (166)
218 3qh9_A Liprin-beta-2; coiled-c 26.7 1.7E+02 0.0057 25.8 6.7 33 251-283 47-79 (81)
219 4dci_A Uncharacterized protein 26.7 1.6E+02 0.0054 28.2 7.3 11 273-283 92-102 (150)
220 3a2a_A Voltage-gated hydrogen 26.7 75 0.0026 26.3 4.3 20 246-265 27-46 (58)
221 4ati_A MITF, microphthalmia-as 26.6 84 0.0029 28.5 5.2 28 226-253 26-53 (118)
222 2eqb_B RAB guanine nucleotide 26.5 3.6E+02 0.012 24.3 10.4 20 264-283 75-94 (97)
223 3haj_A Human pacsin2 F-BAR; pa 26.4 2.1E+02 0.0071 30.9 9.1 63 219-281 185-248 (486)
224 3q0x_A Centriole protein; cent 26.3 1.1E+02 0.0039 30.9 6.6 23 252-274 193-215 (228)
225 1hwt_C Protein (heme activator 25.9 25 0.00086 28.5 1.5 23 242-264 56-78 (81)
226 1ik9_A DNA repair protein XRCC 25.4 1.3E+02 0.0045 29.9 6.7 29 242-270 137-165 (213)
227 1wle_A Seryl-tRNA synthetase; 25.4 3.1E+02 0.011 30.4 10.3 57 227-283 90-155 (501)
228 4ath_A MITF, microphthalmia-as 25.0 1.3E+02 0.0045 26.3 5.9 28 245-272 50-77 (83)
229 1p9i_A Cortexillin I/GCN4 hybr 24.9 52 0.0018 23.9 2.7 22 262-283 3-24 (31)
230 1zxa_A CGMP-dependent protein 24.8 91 0.0031 26.4 4.6 42 247-288 14-55 (67)
231 2ve7_C Kinetochore protein NUF 24.7 48 0.0016 33.5 3.5 22 248-269 152-173 (250)
232 1t6f_A Geminin; coiled-coil, c 24.5 87 0.003 23.9 4.0 25 258-282 7-31 (37)
233 1wlq_A Geminin; coiled-coil; 2 24.5 2E+02 0.0068 25.4 6.8 18 246-263 47-64 (83)
234 4b4t_K 26S protease regulatory 24.0 68 0.0023 34.7 4.8 34 246-279 58-91 (428)
235 3vp9_A General transcriptional 24.0 2E+02 0.0069 25.6 6.9 16 270-285 73-88 (92)
236 3gpv_A Transcriptional regulat 23.9 1E+02 0.0034 28.3 5.3 40 245-284 96-135 (148)
237 3m0d_C TNF receptor-associated 23.7 2.5E+02 0.0085 22.9 7.0 13 246-258 8-20 (65)
238 3he4_B Synzip5; heterodimeric 23.4 2.5E+02 0.0086 21.8 6.4 39 246-284 5-43 (46)
239 1lwu_C Fibrinogen gamma chain; 23.1 1.8E+02 0.0061 30.7 7.6 37 246-282 21-57 (323)
240 2zvf_A Alanyl-tRNA synthetase; 23.1 96 0.0033 28.4 5.0 32 247-278 28-59 (171)
241 2zqm_A Prefoldin beta subunit 22.8 1.6E+02 0.0054 25.3 6.0 29 248-276 81-109 (117)
242 2w83_C C-JUN-amino-terminal ki 22.7 1.3E+02 0.0045 26.2 5.3 37 247-283 33-69 (77)
243 2v66_B Nuclear distribution pr 22.7 4.4E+02 0.015 24.1 9.2 48 235-282 47-101 (111)
244 1lrz_A FEMA, factor essential 22.5 1.4E+02 0.0048 31.3 6.7 20 244-263 247-266 (426)
245 1joc_A EEA1, early endosomal a 22.5 4E+02 0.014 24.0 8.9 36 245-280 19-54 (125)
246 3w03_C DNA repair protein XRCC 22.2 1E+02 0.0035 30.4 5.2 29 245-273 153-181 (184)
247 2wg5_A General control protein 22.0 71 0.0024 28.5 3.7 27 261-287 10-36 (109)
248 1lwu_B Fibrinogen beta chain; 21.7 93 0.0032 32.7 5.1 28 252-279 29-56 (323)
249 3ghg_C Fibrinogen gamma chain; 21.7 2.1E+02 0.0073 31.3 8.0 45 244-288 91-135 (411)
250 2xzr_A Immunoglobulin-binding 21.7 4.6E+02 0.016 23.9 9.6 58 226-283 34-101 (114)
251 2wvr_A Geminin; DNA replicatio 21.6 1.4E+02 0.0049 30.0 6.1 29 253-281 117-145 (209)
252 1ykh_B RNA polymerase II holoe 21.5 1.6E+02 0.0054 27.2 6.0 33 251-283 92-124 (132)
253 3u1c_A Tropomyosin alpha-1 cha 21.2 4.2E+02 0.014 23.2 10.8 41 228-268 28-68 (101)
254 1deq_A Fibrinogen (alpha chain 20.9 2.2E+02 0.0075 31.1 7.8 42 242-283 111-159 (390)
255 1yke_B RNA polymerase II holoe 20.9 1.6E+02 0.0054 27.9 6.0 34 250-283 91-124 (151)
256 1g6u_A Domain swapped dimer; d 20.7 1.1E+02 0.0039 23.9 4.1 16 266-281 28-43 (48)
257 1g6u_A Domain swapped dimer; d 20.5 1.5E+02 0.005 23.3 4.7 25 253-277 22-46 (48)
258 3he4_A Synzip6; heterodimeric 20.5 42 0.0014 27.0 1.7 29 245-273 25-53 (56)
259 2ve7_A Kinetochore protein HEC 20.4 1.5E+02 0.0053 30.6 6.4 16 267-282 219-234 (315)
260 3coq_A Regulatory protein GAL4 20.4 84 0.0029 25.6 3.6 22 243-264 44-65 (89)
261 3viq_B Mating-type switching p 20.3 1E+02 0.0036 27.1 4.3 8 279-286 62-69 (85)
262 4ath_A MITF, microphthalmia-as 20.3 1.8E+02 0.0062 25.5 5.8 38 242-283 37-74 (83)
263 3jsv_C NF-kappa-B essential mo 20.3 2.5E+02 0.0085 25.3 6.7 28 230-257 9-36 (94)
264 1j1d_C Troponin I, TNI; THIN f 20.2 2.1E+02 0.0072 26.9 6.6 42 244-285 65-106 (133)
265 3rrk_A V-type ATPase 116 kDa s 20.1 1.5E+02 0.0052 30.1 6.2 38 243-280 98-138 (357)
266 3mud_A DNA repair protein XRCC 20.1 1.7E+02 0.0057 28.8 6.1 40 244-283 128-167 (175)
No 1
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.48 E-value=9.9e-14 Score=113.00 Aligned_cols=60 Identities=40% Similarity=0.525 Sum_probs=58.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 223 KRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 223 KR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
||++|++|||+||++||+|||+|+++||.++..|+.+|..|+.++..|+.|+..|+++|.
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 588999999999999999999999999999999999999999999999999999999985
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.47 E-value=1.4e-13 Score=113.17 Aligned_cols=63 Identities=22% Similarity=0.377 Sum_probs=60.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 222 MKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 222 eKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
+||.+|++|||+||++||+|||+|+++||.+|..|+.+|..|+.++..|+.|...|++.|..|
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~H 63 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAAH 63 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 378999999999999999999999999999999999999999999999999999999998765
No 3
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.45 E-value=9.2e-14 Score=113.64 Aligned_cols=62 Identities=32% Similarity=0.453 Sum_probs=54.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 223 KRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 223 KR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
|+++|++|||+||++||+|||+|+++||.+|..|+.+|..|..++..|+.|+..|+++|..|
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~~H 62 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVMNH 62 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999999999999999999999999999998765
No 4
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.35 E-value=1.2e-12 Score=105.75 Aligned_cols=51 Identities=37% Similarity=0.552 Sum_probs=47.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 223 KRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAE 273 (727)
Q Consensus 223 KR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaE 273 (727)
|+++|+++||+||++||+|||+|+++||.+|..|+.+|..|..++..|+.+
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999998888764
No 5
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.22 E-value=1.7e-11 Score=101.08 Aligned_cols=61 Identities=20% Similarity=0.279 Sum_probs=53.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 223 KRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 223 KR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
|+.+++++||+||++||+|||+++++||.+++.|+.+|.+|+.+++.|+.|+..||+.|..
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6788999999999999999999999999999999999999999999999999999998753
No 6
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.08 E-value=1.7e-10 Score=95.45 Aligned_cols=51 Identities=29% Similarity=0.343 Sum_probs=42.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 223 KRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAE 273 (727)
Q Consensus 223 KR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaE 273 (727)
+..++..+||+||++||+||++|+.+||.+|..|+.+|..|..++..|..+
T Consensus 9 ~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 9 PAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556679999999999999999999999999999998887776666544
No 7
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.94 E-value=1.5e-09 Score=93.50 Aligned_cols=66 Identities=21% Similarity=0.203 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 219 EEEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 219 EkEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
.++.+...|..||.+||++||+++|+...+++.++..|+.||..|+.+|..|..|+..||+.|.++
T Consensus 11 k~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q~ 76 (78)
T 1gu4_A 11 KHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (78)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred cCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 344456667889999999999999999999999999999999999999999999999999887654
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.92 E-value=3.8e-09 Score=92.66 Aligned_cols=67 Identities=21% Similarity=0.200 Sum_probs=60.8
Q ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 218 GEEEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 218 eEkEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
+.++.+...|..||.+||++||+++|+...+++.++..|+.||..|+.+|..|..|+..|++.|..+
T Consensus 10 dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3344556677899999999999999999999999999999999999999999999999999999874
No 9
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.82 E-value=1.2e-08 Score=86.31 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=49.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 225 KARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 225 ~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.+|+.+||+|++.+|+||++||.+||.+|..|+.++..|......|..++..|...|..
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999887777776666666666666666543
No 10
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.37 E-value=1.7e-06 Score=76.48 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=64.1
Q ss_pred CCChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 216 NLGEEEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 216 ~eeEkEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
.++-...|..||.++||.+|+.||.||.+...+||.++..|..+...|+.++..+..|...+|+.+..+
T Consensus 20 ~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 20 KDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345578899999999999999999999999999999999999999999999999999999999998764
No 11
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.31 E-value=1.5e-08 Score=91.91 Aligned_cols=64 Identities=22% Similarity=0.284 Sum_probs=47.4
Q ss_pred CCChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 216 NLGEEEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQ 279 (727)
Q Consensus 216 ~eeEkEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRq 279 (727)
.++..+.|.+||.++||.+||.||.||.+.+++||.++..|+.+...|..+...|..|...||+
T Consensus 30 ~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~ 93 (107)
T 3a5t_A 30 KEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRS 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSS
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466888999999999999999999999999999988876665554444444444444444333
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=98.30 E-value=1.1e-06 Score=68.14 Aligned_cols=40 Identities=28% Similarity=0.550 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
|+|+.+||.++++|+..|.+|.++++.|++||+.|||.|.
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 6899999999999999999999999999999999999885
No 13
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=96.44 E-value=0.00091 Score=59.38 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=29.2
Q ss_pred CChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 035544 217 LGEEEMKRKARLMRNRESAQLSRQRKKHYVEELED 251 (727)
Q Consensus 217 eeEkEeKR~RRllRNRESAqrSRqRKKqYVeeLE~ 251 (727)
+.-...|..||..+||+||++||+||.+.+++|+.
T Consensus 56 ~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 56 YQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 34467788999999999999999999999988764
No 14
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=94.73 E-value=0.12 Score=42.60 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=27.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 226 ARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLN 264 (727)
Q Consensus 226 RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr 264 (727)
+..-+||.|+++||.|=|+.++...+-...-.+||..|+
T Consensus 4 ~kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr 42 (63)
T 2c9l_Y 4 IKRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLR 42 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHH
Confidence 456789999999999988877766554444444444443
No 15
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=90.73 E-value=0.02 Score=50.87 Aligned_cols=27 Identities=26% Similarity=0.183 Sum_probs=23.2
Q ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHH
Q 035544 218 GEEEMKRKARLMRNRESAQLSRQRKKH 244 (727)
Q Consensus 218 eEkEeKR~RRllRNRESAqrSRqRKKq 244 (727)
.-.-.+..||.-+||+|||.||+||..
T Consensus 61 Ql~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 61 QLALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 446678889999999999999999864
No 16
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=90.45 E-value=0.42 Score=38.49 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 251 DKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 251 ~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
..+..|..||++|+.++..|++++..|+.+|.+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578899999999999999999999999999975
No 17
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=89.14 E-value=1.4 Score=40.92 Aligned_cols=45 Identities=22% Similarity=0.407 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAMP 288 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~p 288 (727)
..+++|+.+++.|.++.+....+++.|+.+|..|..++......+
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~~~~~ 115 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADKKYYP 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhcccCc
Confidence 348999999999999999999999999999999999998766544
No 18
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=88.91 E-value=1.2 Score=37.75 Aligned_cols=36 Identities=19% Similarity=0.124 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKISFFMAENASLK 278 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LR 278 (727)
...+.+||.....|..+|..|+.++..|+.||..||
T Consensus 35 E~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 35 ETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345788999999999999999999999999998875
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.41 E-value=2.1 Score=46.00 Aligned_cols=50 Identities=14% Similarity=0.174 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 235 AQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 235 AqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
.++..+.|++..+.||+++..++.+.++.++++..+.+|+..+++++.+.
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 528 RRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33444455566677778888888888888888889999998888888773
No 20
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=88.00 E-value=0.54 Score=35.64 Aligned_cols=30 Identities=27% Similarity=0.409 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMAEN 274 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~LqaEN 274 (727)
++.+||.+|+.|..++.+|..++..|+..+
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 467899999988888877776666665543
No 21
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=87.62 E-value=0.62 Score=34.94 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFF 270 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~L 270 (727)
++.+||.||+.|-.+|.+|+.++..|
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 57789999998887776655544443
No 22
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=87.28 E-value=1.9 Score=36.45 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 035544 253 VRNMHSTIADLNSKISFFMAENASLKQQLSGSNAM 287 (727)
Q Consensus 253 Vk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~ 287 (727)
++.|+.+++.|+.++..|..+|..|+++|..+..|
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~~~ 83 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALGGC 83 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34556666667777888888899999998876543
No 23
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=86.09 E-value=1.3 Score=33.62 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMA 272 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~Lqa 272 (727)
++.+||.+|++|-.++.+|+.++..|+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4678888888887777666655555443
No 24
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=85.96 E-value=0.75 Score=34.35 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFF 270 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~L 270 (727)
+.+||.||++|-.+|.+|+.++..|
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5678888888877776665555444
No 25
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=85.24 E-value=5.4 Score=35.06 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=38.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 228 LMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 228 llRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
..|-|++++.-=.--++.+++||.+...|+.++.+|+.++..|..-...+...+.
T Consensus 27 arrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~~ 81 (87)
T 1hjb_A 27 VRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLL 81 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHh
Confidence 4445555555445566778999999999999999999999999887776666543
No 26
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=85.00 E-value=2.2 Score=37.32 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
+..+++|..+...|..++++++.....|..||..|+++..
T Consensus 26 qmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 26 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3445555555566666666655555557777777777654
No 27
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=84.22 E-value=1.2 Score=33.47 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
++.+||.||+.|-.+|.+|+ +|...||..|
T Consensus 2 RMnQLEdKVEeLl~~~~~Le-------~EV~RLk~ll 31 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXE-------NEXARIXKLL 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHH-------HHHHHHHHHH
Confidence 46788888888877776555 4555555544
No 28
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=83.90 E-value=1.8 Score=37.48 Aligned_cols=33 Identities=30% Similarity=0.273 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 251 DKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 251 ~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
++|+.|+.++.+|.+++.+|+.||..||+....
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~asp 47 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTLASP 47 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 356788888999999999999999999987644
No 29
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=83.42 E-value=1.2 Score=37.61 Aligned_cols=37 Identities=16% Similarity=0.295 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 242 KKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLK 278 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LR 278 (727)
--.||..|+.+++.|+.+..+|+.++..|+++...|.
T Consensus 45 Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 45 ATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3579999999999999999999999999998877653
No 30
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=83.24 E-value=2.8 Score=32.96 Aligned_cols=38 Identities=24% Similarity=0.443 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Q 035544 245 YVEELEDKVRNMHSTIADLNS-------KISFFMAENASLKQQLS 282 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~-------qls~LqaEN~~LRqQL~ 282 (727)
.+.+||.+|..|+.||..|+. -+..|+.|.+.||..+.
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 456788888888888887764 35678999999998764
No 31
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=82.20 E-value=1.5 Score=32.99 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFF 270 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~L 270 (727)
++.+||.+|++|-.+|.+|..++..|
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL 27 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARL 27 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 46788888888877776655554444
No 32
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=82.15 E-value=3.7 Score=33.06 Aligned_cols=42 Identities=10% Similarity=0.189 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
..+.+|..++..|.+.|.+|...+...+.|...|+++|....
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344578888999999999999999999999999999987643
No 33
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=82.13 E-value=3.5 Score=35.42 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
++|.+||.++..++..+.+|...+...+.+...|+.+|..
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~ 53 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRH 53 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888887777777766666555555555555443
No 34
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=81.10 E-value=2.4 Score=31.68 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFF 270 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~L 270 (727)
+.+||.||+.|-.+|.+|+.++..|
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RL 26 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARI 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5788889888877776655544443
No 35
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=80.74 E-value=9.9 Score=37.12 Aligned_cols=56 Identities=13% Similarity=0.253 Sum_probs=45.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 228 LMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 228 llRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+..-=+.=++.|.+-.+.+.+|+.++..|+.++..++.++..+..||+.|-.+|..
T Consensus 74 LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~ 129 (168)
T 3o0z_A 74 LQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNH 129 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455677888889999999999999999999998888888888888777654
No 36
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=80.69 E-value=2.8 Score=30.72 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAE 273 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaE 273 (727)
+..||.+|.+-+.||-+|.+++.+|+.|
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4678888888888888888888887765
No 37
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=80.60 E-value=1.8 Score=32.54 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFF 270 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~L 270 (727)
++.+||.||+.|-.+|.+|..++..|
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHH
Confidence 56788889888877776655544443
No 38
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=80.50 E-value=2 Score=32.11 Aligned_cols=29 Identities=28% Similarity=0.294 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
+.+||.||++|-.++.+|. .|...||..|
T Consensus 2 MnQLEdKVEell~~~~~le-------~EV~Rl~~ll 30 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNT-------NEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHH-------HHHHHHHHHh
Confidence 5678888887776665554 4555555544
No 39
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=79.68 E-value=2.6 Score=35.23 Aligned_cols=34 Identities=26% Similarity=0.366 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQ 279 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRq 279 (727)
|+.|=+-...|..|...|++++..|+.||..||.
T Consensus 29 iQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 29 VQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 4444444556777777788899999999999985
No 40
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=78.87 E-value=1.7 Score=44.68 Aligned_cols=45 Identities=9% Similarity=0.155 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAM 287 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~ 287 (727)
...+.+|+.++..|+++|..|...+..++.|+..||.+|..+...
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sP 97 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQP 97 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 445778899999999999999999999999999999999887644
No 41
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=78.69 E-value=7.6 Score=33.21 Aligned_cols=34 Identities=32% Similarity=0.369 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.+||..|+.+.+ +|..+...|+.|+..|+++|..
T Consensus 46 ~~yI~~L~~~~~-------~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 46 KLHIKKLEDSDR-------KAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555554 4555556667777777777654
No 42
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=78.61 E-value=18 Score=33.39 Aligned_cols=58 Identities=10% Similarity=0.129 Sum_probs=47.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 228 LMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 228 llRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
+.+=|.-=.+....-+.|+.+|+.+|..|+.++.+-+........||..||.++....
T Consensus 24 ie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 24 ISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455677788899999999999999999999888999999999999998643
No 43
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=78.61 E-value=2.3 Score=32.00 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
++.+||.||+.|-.+|.+|+ .|..+||..|
T Consensus 2 RM~QLEdKVEeLl~~n~~Le-------~EV~RLk~LL 31 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIE-------NELARIKKLL 31 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHH-------HHHHHHHHHT
T ss_pred chhHHHHHHHHHHHhhHHHH-------HHHHHHHHHH
Confidence 45778888888777775554 4555555544
No 44
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=78.32 E-value=3.5 Score=35.33 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 035544 260 IADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 260 NqeLr~qls~LqaEN~~LRqQL~ 282 (727)
+..|+.+...|+.|+..|+.+..
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~ 71 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQR 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555443
No 45
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=77.59 E-value=4.1 Score=35.32 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 254 RNMHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 254 k~LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
+.|+.+++.|..++..|+.+|..|+++|..+.
T Consensus 55 ~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 55 LSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555556666677777777777777654
No 46
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=77.51 E-value=3.5 Score=35.35 Aligned_cols=41 Identities=12% Similarity=0.019 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
.+..+|.-+..|.....+.+.++..|+.+.+.|.++|....
T Consensus 22 klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 22 RLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677778888888899999999999999999999988744
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=77.38 E-value=7.9 Score=41.65 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
+.+++||.+.+..+++..+|+++++.+.+|...|.+.+.
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555555555555555555555444444444433
No 48
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=77.30 E-value=16 Score=31.52 Aligned_cols=45 Identities=18% Similarity=0.347 Sum_probs=35.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 228 LMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMA 272 (727)
Q Consensus 228 llRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~Lqa 272 (727)
..|-|+.++.-=+--++.+++||.+...|+.++..|+.++..|..
T Consensus 27 akrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 27 VRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566655555556778899999999999999999999988864
No 49
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=77.17 E-value=6.5 Score=34.07 Aligned_cols=38 Identities=11% Similarity=0.123 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 241 RKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLK 278 (727)
Q Consensus 241 RKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LR 278 (727)
+-.+||..|+.+...|+.+...|+.+...|..+...|+
T Consensus 49 ~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 49 KATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34689999999999999999999999999999888875
No 50
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=76.93 E-value=5.6 Score=34.79 Aligned_cols=35 Identities=37% Similarity=0.379 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMAENASLKQ 279 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRq 279 (727)
-++.||.|++.+-..+.-|+-++..|..+|..|.+
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777776666555544444444444444433
No 51
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=72.84 E-value=26 Score=33.75 Aligned_cols=38 Identities=18% Similarity=0.102 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
++.|..++..|+.++..|+.++..|++||..|-+++..
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666677778888889999999999998887654
No 52
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=72.60 E-value=13 Score=32.04 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 260 IADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 260 NqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
+.+|..++.....+++.|+.+|.+.+
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444445555555555555443
No 53
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=71.37 E-value=30 Score=30.35 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 242 KKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
-..||.+|..++..+..++..|.-++..|+++...||.+|
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3466777777777777777777777777777777777654
No 54
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=71.15 E-value=8.7 Score=31.72 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAMP 288 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~p 288 (727)
+..|-+....|-.+.++|+.+....++|+.+|+..|..|+-.+
T Consensus 13 ~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkqHgl~~ 55 (58)
T 3a2a_A 13 LLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQHGLLG 55 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 3444444455556666777777888889999999998887653
No 55
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=70.59 E-value=5.2 Score=30.11 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
++.+||.||+.|-.++.. |+.|..+|+..|.
T Consensus 2 RMnQledKvEel~~~~~~-------l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYH-------NANELARVAKLLG 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHH-------HHHHHHHHHHHhc
Confidence 466788888777666654 5555555665554
No 56
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=70.12 E-value=29 Score=29.46 Aligned_cols=56 Identities=20% Similarity=0.140 Sum_probs=35.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH----------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 228 LMRNRESAQLSRQRKKHYVEELEDKV----------RNMH---STIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 228 llRNRESAqrSRqRKKqYVeeLE~KV----------k~LE---sENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+...-.+-++-|.+=..++.+|..-| ..|. .-+..|+.++..|+.|+..|+.++..
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344555555555566677766544 2232 24456778888888888888887765
No 57
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=70.11 E-value=5.9 Score=33.76 Aligned_cols=29 Identities=10% Similarity=0.161 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 242 KKHYVEELEDKVRNMHSTIADLNSKISFF 270 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsENqeLr~qls~L 270 (727)
--+||..|+.+++.|+.++..|+.+++..
T Consensus 48 Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 48 AIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35788888888888888888888776654
No 58
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=69.75 E-value=15 Score=44.00 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 035544 263 LNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 263 Lr~qls~LqaEN~~LRqQL~~ 283 (727)
|++++..|+.||+.|++|+..
T Consensus 1021 L~~kv~~L~~e~~~L~qq~~~ 1041 (1080)
T 2dfs_A 1021 TEQLVSELKEQNTLLKTEKEE 1041 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555567777777776654
No 59
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=69.27 E-value=6.5 Score=29.87 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 251 DKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 251 ~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+++.+|+....+|..+...|+.|..+||..|..
T Consensus 1 eRMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 357889999999999999999999999988865
No 60
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=69.15 E-value=24 Score=31.16 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=6.6
Q ss_pred HHHHhHHHHHHHHHHHH
Q 035544 227 RLMRNRESAQLSRQRKK 243 (727)
Q Consensus 227 RllRNRESAqrSRqRKK 243 (727)
+-.+.++.++....|++
T Consensus 32 ~YfrqkekEqL~~LKkk 48 (84)
T 1gmj_A 32 RYFRARAKEQLAALKKH 48 (84)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444443333333
No 61
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=69.10 E-value=13 Score=29.55 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 249 LEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 249 LE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
|....-+|+..-+.|.+-+..|+.|...|...+..|
T Consensus 15 lkkdnlqlerdeqnlekiianlrdeiarlenevash 50 (52)
T 3he5_B 15 LKKDNLQLERDEQNLEKIIANLRDEIARLENEVASH 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 333334455555555566666666666666555543
No 62
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=68.96 E-value=8.7 Score=30.09 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKIS 268 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls 268 (727)
....+||+++..|+.||+-|++.+.
T Consensus 17 ~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 17 NKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 3458999999999999999988653
No 63
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=67.70 E-value=22 Score=28.53 Aligned_cols=40 Identities=18% Similarity=0.068 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNA 286 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a 286 (727)
..|-+-...|-...++|+.....+++|+.+|+..|..|+-
T Consensus 7 ~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkqHgl 46 (48)
T 3vmx_A 7 LRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQNGL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcCC
Confidence 3333344444555566667777778888899888888764
No 64
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=67.29 E-value=4.1 Score=28.98 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 254 RNMHSTIADLNSKISFFMAENASLK 278 (727)
Q Consensus 254 k~LEsENqeLr~qls~LqaEN~~LR 278 (727)
+.|.+.|+.|++++..|+-|...|.
T Consensus 3 rrlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 4566667777777777777776664
No 65
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=66.87 E-value=15 Score=31.40 Aligned_cols=42 Identities=14% Similarity=0.251 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 242 KKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+...+..|+.+.+.++.+...|..++..++.+...|+.+|..
T Consensus 63 ~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 63 KDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777788888888888888888888888764
No 66
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=66.85 E-value=14 Score=32.04 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
...+..|+.+.+.++.+...|..++..++.+...|+.+|..
T Consensus 69 ~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 69 DKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666677777788888888888888888888888876
No 67
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=66.64 E-value=2.2 Score=43.04 Aligned_cols=38 Identities=16% Similarity=0.289 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccC
Q 035544 248 ELEDKVRNMHSTIADLNS---KISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 248 eLE~KVk~LEsENqeLr~---qls~LqaEN~~LRqQL~~~~ 285 (727)
.|.++.+.|++||.+|+. ++..|++||.+||+.|....
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~~~ 63 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLESEVADLKKENKDLKESLDITD 63 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 445556666777766664 44567889999999887543
No 68
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=66.45 E-value=13 Score=29.43 Aligned_cols=36 Identities=33% Similarity=0.553 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhc
Q 035544 248 ELEDKVRNMHSTIADLNSKISFFMAE----NASLKQQLSG 283 (727)
Q Consensus 248 eLE~KVk~LEsENqeLr~qls~LqaE----N~~LRqQL~~ 283 (727)
+||++|..|+.....|+.+++.|.+| ...|||++..
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~ 41 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQ 41 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999888898888888777 4556666543
No 69
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=66.06 E-value=5.4 Score=41.04 Aligned_cols=40 Identities=13% Similarity=0.201 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 241 RKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQ 280 (727)
Q Consensus 241 RKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQ 280 (727)
.++..+..|+.+.+.|..+.++|++++..|++|+..|++-
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sP 97 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQP 97 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3566778888899999999999999999999999888764
No 70
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=65.50 E-value=0.12 Score=45.95 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 035544 220 EEMKRKARLMRNRESAQLSRQRKKH 244 (727)
Q Consensus 220 kEeKR~RRllRNRESAqrSRqRKKq 244 (727)
.-.+..||.-+||+|||.||+||..
T Consensus 63 ~lIrdiRRRgKNkvAAqnCRKRKld 87 (90)
T 2lz1_A 63 ALIRDIRRRGKNKVAAQNCRKRKLE 87 (90)
T ss_dssp HHHHHHHHHSCSCCCCCCCSCCCCS
T ss_pred HHHHHHHHhhhhHHHHHHcchhhcc
Confidence 4556788999999999999999853
No 71
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=65.35 E-value=60 Score=28.17 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLKQQ 280 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQ 280 (727)
-+|-.++..|+.|+..|+.+++.+.-++..|+++
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555443
No 72
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=65.10 E-value=64 Score=28.45 Aligned_cols=49 Identities=12% Similarity=0.216 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 233 ESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 233 ESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
+.|..--..-+..+..+|.+...++.++..|++++..|+.+...+..+|
T Consensus 19 e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L 67 (101)
T 3u1c_A 19 ENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEEL 67 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444455555555555555555544444433333
No 73
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=64.92 E-value=5.2 Score=31.75 Aligned_cols=25 Identities=12% Similarity=0.352 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKI 267 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~ql 267 (727)
+.|++.||.++..|+.++..|+..+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999999888887777654
No 74
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=64.82 E-value=12 Score=27.52 Aligned_cols=29 Identities=31% Similarity=0.385 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 252 KVRNMHSTIADLNSKISFFMAENASLKQQ 280 (727)
Q Consensus 252 KVk~LEsENqeLr~qls~LqaEN~~LRqQ 280 (727)
++..|.+|+..|++++..|.-|...|+|-
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkqg 31 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45567778888888888888888888763
No 75
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=64.33 E-value=7.2 Score=41.76 Aligned_cols=39 Identities=15% Similarity=0.254 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
..++||++++.++.++++|++++...+.+.+.|-.++..
T Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~e 56 (403)
T 4etp_A 18 KIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQE 56 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555556666666666666665555555556555555
No 76
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=63.66 E-value=27 Score=36.78 Aligned_cols=34 Identities=9% Similarity=0.192 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 249 LEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 249 LE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
||.+|.+-++.+++|+.++..|.++.+.++.++.
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 434 LDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444443
No 77
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=63.47 E-value=26 Score=42.06 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMA 272 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~Lqa 272 (727)
+..++|++++..|++||+.|++++..|+.
T Consensus 1016 ~~~~~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1016 KYKHETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33467778888888888888888887763
No 78
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=62.90 E-value=9.9 Score=28.60 Aligned_cols=32 Identities=16% Similarity=0.246 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 252 KVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 252 KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+..+|+....+|-.+.+.|+.|+..||..|..
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ll~~ 33 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXLVXE 33 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 46778888888888888888888888887753
No 79
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=62.77 E-value=3.8 Score=37.67 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC
Q 035544 261 ADLNSKISFFMAENASLKQQLSGSNA 286 (727)
Q Consensus 261 qeLr~qls~LqaEN~~LRqQL~~~~a 286 (727)
.+|..++++|+.||..||++|...+.
T Consensus 11 EeLaaeL~kLqmENK~LKkkl~~~g~ 36 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKVKSSGA 36 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 56778888899999999999976433
No 80
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=62.66 E-value=8.5 Score=38.94 Aligned_cols=62 Identities=13% Similarity=0.113 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 220 EEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 220 kEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
.+.+|.+|++.-=.-=.++|+-|..-.+++-.+.+.+..+.++|+.++..++++...|++++
T Consensus 117 P~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~ 178 (250)
T 2ve7_C 117 PKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEV 178 (250)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC------
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888876655556666666665555544444444444444444444444433333333
No 81
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=62.35 E-value=7.7 Score=29.49 Aligned_cols=32 Identities=16% Similarity=0.353 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 252 KVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 252 KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
++.+|+.+..+|..+...|+.|..+||..|..
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 46788888888888888888888888887764
No 82
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=62.28 E-value=65 Score=29.24 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAMP 288 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~p 288 (727)
.+|..++..|+.|--.|..++..-.-|...|++++..++.+-
T Consensus 52 keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dlgKfk 93 (107)
T 1ytz_T 52 KELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQAQKHS 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHhcCcc
Confidence 344444555566666677777777888999999998886653
No 83
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=61.80 E-value=31 Score=31.41 Aligned_cols=21 Identities=24% Similarity=0.154 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 035544 263 LNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 263 Lr~qls~LqaEN~~LRqQL~~ 283 (727)
|..++..|..||+.|+++-..
T Consensus 70 Le~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 70 LELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334445555666666655544
No 84
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=61.14 E-value=7.8 Score=33.66 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKI 267 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~ql 267 (727)
|+.|.+|+.++.+|+.||.-|+.-.
T Consensus 21 Ke~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 21 KEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5567888888888888887776543
No 85
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=60.35 E-value=11 Score=28.26 Aligned_cols=24 Identities=4% Similarity=0.171 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 261 ADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 261 qeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
.+|..+++.|..+|..|.+++..+
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Confidence 456666677777777777666553
No 86
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=59.81 E-value=47 Score=28.84 Aligned_cols=60 Identities=8% Similarity=0.166 Sum_probs=45.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 224 RKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 224 R~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
|..++++--.+.+++-..=...++.|..+|..|.-+++++..++.++....+.+-+.|..
T Consensus 7 rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~ 66 (83)
T 2xdj_A 7 RVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDS 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444322333344455677889999999999999999999999999999998888865
No 87
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=59.45 E-value=9.1 Score=28.65 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 253 VRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 253 Vk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
..+||....+|..+.+.|++|...||..|.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 456777888888888888888888887664
No 88
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=59.45 E-value=15 Score=31.65 Aligned_cols=31 Identities=16% Similarity=0.315 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 241 RKKHYVEELEDKVRNMHSTIADLNSKISFFM 271 (727)
Q Consensus 241 RKKqYVeeLE~KVk~LEsENqeLr~qls~Lq 271 (727)
.|.+.|++||.++.+.+.++++|+.++..++
T Consensus 37 ~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 37 QRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3555677777777777777777777766553
No 89
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=59.03 E-value=12 Score=42.24 Aligned_cols=44 Identities=7% Similarity=0.123 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 237 LSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQ 280 (727)
Q Consensus 237 rSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQ 280 (727)
.....+.||-++||++++.|+.+++.-..+|..||.-.+.|+..
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~k 146 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVD 146 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777778999998888876554334444444444444333
No 90
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=58.83 E-value=78 Score=29.53 Aligned_cols=7 Identities=14% Similarity=0.017 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 035544 271 MAENASL 277 (727)
Q Consensus 271 qaEN~~L 277 (727)
+.++..|
T Consensus 116 ~~~~~~l 122 (138)
T 3hnw_A 116 KSEINKY 122 (138)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 91
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=58.82 E-value=11 Score=31.02 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 255 NMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 255 ~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
.|+.+...|..+...|..|+..|+++|
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 92
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=58.65 E-value=14 Score=31.95 Aligned_cols=37 Identities=35% Similarity=0.500 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhc
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAE----NASLKQQLSG 283 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaE----N~~LRqQL~~ 283 (727)
++||++|..|+.....|+.+++.|.+| .+.|||+|..
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~ 43 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTK 43 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777777777766555 4455555544
No 93
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=58.62 E-value=12 Score=31.60 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 241 RKKHYVEELEDKVRNMHSTIADLNSKISFFMA 272 (727)
Q Consensus 241 RKKqYVeeLE~KVk~LEsENqeLr~qls~Lqa 272 (727)
.|.+.|.+||..+..-..++++|+.++..++.
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666777777766666666666655555443
No 94
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=58.57 E-value=47 Score=35.07 Aligned_cols=46 Identities=13% Similarity=-0.057 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 234 SAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQ 279 (727)
Q Consensus 234 SAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRq 279 (727)
.=++-|+|.+++++...++.+.|++++++|+..+..+..+...-++
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
T 3oja_A 425 EQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANA 470 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhccc
Confidence 3344555555666666666666666666666665555444333333
No 95
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=58.53 E-value=8.8 Score=30.92 Aligned_cols=29 Identities=7% Similarity=0.206 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMA 272 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~Lqa 272 (727)
++++++...++.|..+|.+|++++..|+.
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666666666666665544
No 96
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=58.45 E-value=23 Score=28.80 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhc
Q 035544 247 EELEDKVRNMHSTIADLNSKI-------SFFMAENASLKQQLSG 283 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~ql-------s~LqaEN~~LRqQL~~ 283 (727)
++|-.+|+.|..||..|++++ +.|+.|-..+|.-|..
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~ 49 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQ 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHH
Confidence 567778888888888887655 4677777777766654
No 97
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=58.37 E-value=24 Score=27.44 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 242 KKHYVEELEDKVRNMHSTIADLNSKISFFMAE 273 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsENqeLr~qls~LqaE 273 (727)
-|.||++||++..+|..-...|+-.-..|+-|
T Consensus 8 lknyiqeleernaelknlkehlkfakaelefe 39 (46)
T 3he4_B 8 LKNYIQELEERNAELKNLKEHLKFAKAELEFE 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHH
Confidence 46789999888777765555555444444443
No 98
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=57.82 E-value=13 Score=40.04 Aligned_cols=45 Identities=11% Similarity=0.049 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 035544 242 KKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNA 286 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a 286 (727)
.++.+++|+++.++++.+++++++++.+.+.+.+.|-.+|+....
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 15 LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344457788888888888888888888888888888888877443
No 99
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=57.74 E-value=16 Score=27.55 Aligned_cols=27 Identities=26% Similarity=0.239 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 256 MHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 256 LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
+..+|+..++.+..|..+|..|.+|+.
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666664
No 100
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=57.65 E-value=15 Score=26.62 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFM 271 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~Lq 271 (727)
.+.||.++..|+...+.|..+++.|+
T Consensus 3 wealekkcaalesklqalekkleale 28 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788899999988888888888775
No 101
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=57.63 E-value=86 Score=26.43 Aligned_cols=48 Identities=13% Similarity=0.147 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 234 SAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 234 SAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
.|..--..-...+.+.|.+...++.++..|++++..|+.+...+..+|
T Consensus 17 ~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l 64 (81)
T 1ic2_A 17 NALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444555555555555555666655555554444444
No 102
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=56.81 E-value=29 Score=32.34 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 251 DKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 251 ~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.++++|+.|+..|.+++....+|..+||.....
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~ 103 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQV 103 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence 357788889999999999999999999887664
No 103
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=56.80 E-value=15 Score=27.55 Aligned_cols=22 Identities=14% Similarity=0.087 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 035544 262 DLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 262 eLr~qls~LqaEN~~LRqQL~~ 283 (727)
+|..+++.|..+|..|.+++..
T Consensus 4 QLEdKVEell~~~~~le~EV~R 25 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIAR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 4555555555555555555544
No 104
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=55.92 E-value=11 Score=37.38 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
+++.-+.-|+.|..||..|.++++....|+..|+.||..++
T Consensus 14 ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~ 54 (190)
T 4emc_A 14 QIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLN 54 (190)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445667777777777777777777777777776543
No 105
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=55.71 E-value=93 Score=27.37 Aligned_cols=60 Identities=12% Similarity=0.160 Sum_probs=41.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 223 KRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 223 KR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
..+..++++|+....-....+.....|+.+=..+..+.+.++.++..++.|...|..|+.
T Consensus 25 ~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~ 84 (96)
T 3q8t_A 25 QELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMR 84 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777777776666666666666666666666777777777777777777777664
No 106
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=55.34 E-value=7.9 Score=40.02 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035544 262 DLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 262 eLr~qls~LqaEN~~LRqQL 281 (727)
++++++.+++.+.+.+.||-
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~ 398 (449)
T 3iot_A 379 KAFESLKSFQQQQQQQQQQQ 398 (449)
T ss_dssp HHHHHHHHTC----------
T ss_pred HHHHHHHhhccccccccCCC
Confidence 34444444444444443333
No 107
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=55.27 E-value=82 Score=27.67 Aligned_cols=47 Identities=11% Similarity=0.167 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 231 NRESAQLSRQRKKHYV-----------EELEDKVRNMHSTIADLNSKISFFMAENASL 277 (727)
Q Consensus 231 NRESAqrSRqRKKqYV-----------eeLE~KVk~LEsENqeLr~qls~LqaEN~~L 277 (727)
|-.||-.+--|-|+-| ..+|.++++.+..|.+|..++..|+.+...|
T Consensus 14 eLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554444444 2334444444445555544444444444443
No 108
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=54.80 E-value=32 Score=45.96 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=32.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 223 KRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFF 270 (727)
Q Consensus 223 KR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~L 270 (727)
++++.++++-+.|++.-+.+++.+.+||++++.|+.+.+++.++.+.|
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L 2061 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQI 2061 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666667777777788888888888888877665544443333
No 109
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=54.53 E-value=12 Score=30.08 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 035544 258 STIADLNSKISFFMAENASLKQQLSGSNA 286 (727)
Q Consensus 258 sENqeLr~qls~LqaEN~~LRqQL~~~~a 286 (727)
....+|..++..|+.||..|+.++..+..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888999999888877443
No 110
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=53.96 E-value=17 Score=27.20 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 253 VRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 253 Vk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
..+||....+|-.+...|+.|...||..|.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 467888888888888888888888888775
No 111
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=53.88 E-value=18 Score=27.17 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 252 KVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 252 KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
++.+|+....+|-.+...|+.|..+||..|..
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ll~~ 33 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKAVGE 33 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 56788888888988889999999999887753
No 112
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=53.88 E-value=54 Score=29.87 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 251 DKVRNMHSTIADLNSKISFFMAENASLKQQ 280 (727)
Q Consensus 251 ~KVk~LEsENqeLr~qls~LqaEN~~LRqQ 280 (727)
.+|..|+.+..+|+.+...|..||...+++
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 344444444444444445555666666654
No 113
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=53.78 E-value=14 Score=26.29 Aligned_cols=25 Identities=32% Similarity=0.282 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 255 NMHSTIADLNSKISFFMAENASLKQ 279 (727)
Q Consensus 255 ~LEsENqeLr~qls~LqaEN~~LRq 279 (727)
.|+-||..|++++..|.+....|+|
T Consensus 4 alefendaleqkiaalkqkiaslkq 28 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASLKQ 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHhccHHHHHHHHHHHHHHHHhcC
Confidence 4666777777777777777766664
No 114
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=53.27 E-value=29 Score=30.47 Aligned_cols=27 Identities=7% Similarity=0.246 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 256 MHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 256 LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
++.++..|+.++..+..|+..|..++.
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~d 80 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERD 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666655554
No 115
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=53.13 E-value=14 Score=27.76 Aligned_cols=24 Identities=8% Similarity=0.129 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 261 ADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 261 qeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
.+|..+++.|..+|..|.+++..+
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RL 27 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHH
Confidence 456677777777777777776653
No 116
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=53.08 E-value=87 Score=27.61 Aligned_cols=52 Identities=23% Similarity=0.276 Sum_probs=31.9
Q ss_pred HHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 229 MRNRESAQLS---RQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 229 lRNRESAqrS---RqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
-.-|++|+.- |++-++.|..|-.+ |+.++..-+.+|..|+.+...++..|..
T Consensus 22 FgKrEaA~Ee~YfrqkekEqL~~LKkk---l~~el~~h~~ei~~le~~i~rhk~~i~~ 76 (84)
T 1gmj_A 22 FGKREQAEEERYFRARAKEQLAALKKH---KENEISHHAKEIERLQKEIERHKQSIKK 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777765 46666666665444 3555666666666676666666666544
No 117
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=52.12 E-value=68 Score=29.93 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 035544 259 TIADLNSKISFFMAENASLKQ 279 (727)
Q Consensus 259 ENqeLr~qls~LqaEN~~LRq 279 (727)
++.+|++++..|+.++..|..
T Consensus 111 e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 111 EIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444333
No 118
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=52.06 E-value=1e+02 Score=30.56 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=35.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 229 MRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 229 lRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
..-+.-=..+..-=+++=.+||..+..++..+..|+.++..|..|...+|..+..
T Consensus 27 ~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~ 81 (189)
T 2v71_A 27 QEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEH 81 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455566666667777777777777777777777777776666655543
No 119
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=51.86 E-value=7.3 Score=31.19 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 035544 242 KKHYVEELEDKVRNMHSTIADLN 264 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsENqeLr 264 (727)
++.|+++||.++..|+..++.|.
T Consensus 47 ~~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 47 KRARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Confidence 34788999998888877666553
No 120
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=51.39 E-value=71 Score=28.85 Aligned_cols=52 Identities=19% Similarity=0.137 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 234 SAQLSRQRKKHYVEELEDKVRNM---------------------HSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 234 SAqrSRqRKKqYVeeLE~KVk~L---------------------EsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
+-.+.|.|=++.++.||.++... ....++.+..+++|++|+..||.+|....
T Consensus 23 ~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~lE 95 (100)
T 1go4_E 23 ELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAME 95 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555556666677766541 12334678999999999999999998754
No 121
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=51.35 E-value=28 Score=28.14 Aligned_cols=29 Identities=0% Similarity=0.077 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAEN 274 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN 274 (727)
+++|..+|..|..+..+|...+..|+.+.
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v 34 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDA 34 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555444444444444444333
No 122
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=51.16 E-value=17 Score=26.68 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 248 ELEDKVRNMHSTIADLNSKISFFMAEN 274 (727)
Q Consensus 248 eLE~KVk~LEsENqeLr~qls~LqaEN 274 (727)
.||+.+..|+.-.++|++++..|+.-.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888888887654
No 123
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=50.48 E-value=80 Score=25.42 Aligned_cols=33 Identities=12% Similarity=0.243 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 253 VRNMHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 253 Vk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
+..|+.+...|..+...|..+...|+.++..+.
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666665543
No 124
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=50.38 E-value=48 Score=28.75 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
..++..+.++..++.+...|+.++..+..+...|++++.
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666677777777777777776665
No 125
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=50.23 E-value=19 Score=26.07 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 248 ELEDKVRNMHSTIADLNSKISFFMA 272 (727)
Q Consensus 248 eLE~KVk~LEsENqeLr~qls~Lqa 272 (727)
+|..-+..|+.||.+|+.+++.|.+
T Consensus 3 qlnallasleaenkqlkakveella 27 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666777777666666544
No 126
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=49.51 E-value=42 Score=29.47 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
.|.+|--+|..|+.|-.+...++..-.+|...|++||.
T Consensus 27 Ei~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe 64 (81)
T 3qh9_A 27 ELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVA 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34555555555555555544555555555555555543
No 127
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=48.70 E-value=32 Score=36.36 Aligned_cols=39 Identities=23% Similarity=0.112 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.+..||..+...+.+++.|+.++..+++....|+++|..
T Consensus 13 ~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~ 51 (323)
T 1lwu_C 13 EVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVD 51 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666666666666666665554
No 128
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=48.33 E-value=27 Score=26.28 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 035544 262 DLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 262 eLr~qls~LqaEN~~LRqQL~ 282 (727)
+|..+++.|..++..|-.++.
T Consensus 5 QledKvEel~~~~~~l~nEv~ 25 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELA 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 344444555555555554443
No 129
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=48.11 E-value=17 Score=27.35 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 252 KVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 252 KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
+..+|+....+|-.+-+.|++|...||..|.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 5567888888888888888888888887664
No 130
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=47.92 E-value=71 Score=33.60 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 257 HSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 257 EsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+++..+-+++++.|+.|...|.++|..
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (471)
T 3mq9_A 435 DAEKAQGQKKVEELEGEITTLNHKLQD 461 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445566666666666666654
No 131
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=46.85 E-value=47 Score=28.85 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHhc
Q 035544 271 MAENASLKQQLSG 283 (727)
Q Consensus 271 qaEN~~LRqQL~~ 283 (727)
..|...||+.|..
T Consensus 61 I~eL~elRqgLak 73 (79)
T 3cvf_A 61 LFELSELREGLAR 73 (79)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555544
No 132
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=45.85 E-value=16 Score=30.73 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 035544 260 IADLNSKISFFMAENASLKQQ 280 (727)
Q Consensus 260 NqeLr~qls~LqaEN~~LRqQ 280 (727)
+..|+.++..|+.|+..|+++
T Consensus 59 I~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 59 IQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 445566666666666666554
No 133
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=45.76 E-value=52 Score=28.20 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhc
Q 035544 271 MAENASLKQQLSG 283 (727)
Q Consensus 271 qaEN~~LRqQL~~ 283 (727)
..|...||+.|..
T Consensus 55 I~eL~elrq~Lak 67 (72)
T 3cve_A 55 IFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555554
No 134
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=45.71 E-value=76 Score=30.81 Aligned_cols=26 Identities=4% Similarity=0.047 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHhcc
Q 035544 259 TIADLNSKISFFMAEN----ASLKQQLSGS 284 (727)
Q Consensus 259 ENqeLr~qls~LqaEN----~~LRqQL~~~ 284 (727)
++.+|.+++..|+.+. ..++.+|.+.
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~R~k~~~em~Ke 143 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQRVKRDVAMAQA 143 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444443333 3344455444
No 135
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=45.47 E-value=21 Score=29.03 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 260 IADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 260 NqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
..+|-+|++.|..||..||+.|..
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~d 28 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELED 28 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHh
Confidence 357888999999999999998865
No 136
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=45.25 E-value=43 Score=33.02 Aligned_cols=39 Identities=5% Similarity=0.081 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
++++-|=.++..|+.+|.+|+++.+.|+.|-....+||.
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555566666666666666666666666666555554
No 137
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=44.93 E-value=45 Score=29.08 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 255 NMHSTIADLNSKISFFMAENASLKQQ 280 (727)
Q Consensus 255 ~LEsENqeLr~qls~LqaEN~~LRqQ 280 (727)
.|..++.+++..+..|+.||..|+.-
T Consensus 38 ~Lh~~ie~~~eEi~~LkeEN~~L~el 63 (79)
T 2zxx_A 38 KLHKEIEQKDSEIARLRKENKDLAEV 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555443
No 138
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=44.85 E-value=19 Score=28.87 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 035544 247 EELEDKVRNMHSTIADLNSKIS 268 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls 268 (727)
++|..++..|++++++|+.++.
T Consensus 29 ~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 29 AEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555555543
No 139
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=44.32 E-value=65 Score=26.04 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 252 KVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 252 KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
++.+|..+.+.|..++.+|..+...||..+
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v 34 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDA 34 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555544
No 140
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=44.11 E-value=47 Score=29.71 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQ 280 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQ 280 (727)
++.|+..++.|+.+...++.++..++.+.+.+.++
T Consensus 97 ~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 97 KNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35566677777777777777777777777766654
No 141
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=43.86 E-value=1e+02 Score=28.04 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
..+.+|+.++...+..|..|...-..|+.++..|+.+|..
T Consensus 83 ~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 83 AKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777778888888888888888888888865
No 142
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=43.73 E-value=47 Score=33.37 Aligned_cols=59 Identities=17% Similarity=0.167 Sum_probs=47.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 035544 226 ARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAM 287 (727)
Q Consensus 226 RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~ 287 (727)
--++-|-+-|+-.| .+-+++||..+...-++.+.|....+.|++|+..||..|.....-
T Consensus 15 ~~~~~~~~~~~~~~---~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn 73 (206)
T 3oa7_A 15 LNKLLDPELAQSER---TEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGN 73 (206)
T ss_dssp HHHHHCTTCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHhcCHhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCC
Confidence 34455555555443 467889999999999999999999999999999999999985544
No 143
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=43.20 E-value=66 Score=27.01 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+..-|.|+++|-+-|+.|..++..|+.+.+.|.+.-..
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~ 59 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQ 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhh
Confidence 34557889999999999999999999998888776443
No 144
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=42.51 E-value=43 Score=30.27 Aligned_cols=29 Identities=17% Similarity=0.231 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMAE 273 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~LqaE 273 (727)
.+..|..++..|+.||..|++++..|+.+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666555555555444
No 145
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=42.21 E-value=1.2e+02 Score=26.85 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 236 QLSRQRKKHYVEELEDK----VRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 236 qrSRqRKKqYVeeLE~K----Vk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
++-|-+-+-|.+.--.+ ...|+.++..|+.+++.|..|+..++..+..
T Consensus 29 ~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~ 80 (90)
T 2wt7_B 29 KRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDA 80 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777787665443 3579999999999999999999999887754
No 146
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=41.96 E-value=95 Score=31.49 Aligned_cols=56 Identities=13% Similarity=0.132 Sum_probs=43.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 223 KRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 223 KR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
...|+-+..|-.+-+ +.+..|++++++.+.|++.++.++++.+...+.||.+-.+|
T Consensus 163 e~Ik~yLa~R~~~lK------~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~ 218 (228)
T 3q0x_A 163 SVVKQFLAFRLSEVK------GTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKH 218 (228)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555555555443 35678999999999999999999999999999999886654
No 147
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=41.84 E-value=58 Score=26.21 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
-..||.-|..|+..|+.|+..+..|+.....|...+
T Consensus 19 naklenivarlendnanlekdianlekdianlerdv 54 (56)
T 3he4_A 19 NAKLENIVARLENDNANLEKDIANLEKDIANLERDV 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhh
Confidence 356777888888888888888888888888776554
No 148
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=41.83 E-value=1.8e+02 Score=25.42 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 035544 242 KKHYVEELEDKVRNMH 257 (727)
Q Consensus 242 KKqYVeeLE~KVk~LE 257 (727)
+-+.+..|..+++.|+
T Consensus 42 ~E~ei~sL~kKiq~lE 57 (101)
T 3u59_A 42 LEEEQQGLQKKLKGTE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 149
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=41.76 E-value=1e+02 Score=34.23 Aligned_cols=32 Identities=9% Similarity=0.291 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 252 KVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 252 KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+.+.|.++..+|+.++..|+++...+.++|..
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666777777777777777777765
No 150
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=41.74 E-value=55 Score=28.35 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
..+.+++.+...+..+...|+.+...+..+...|+..+....
T Consensus 3 ~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 3 KLLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346677777777777777788888888888888877776643
No 151
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=41.60 E-value=63 Score=28.08 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 249 LEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 249 LE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
||.+|+.|+...++-+.+-..++.|...|-++|
T Consensus 25 Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 25 LEHQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433333333334444444444433
No 152
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=41.37 E-value=71 Score=34.43 Aligned_cols=14 Identities=36% Similarity=0.567 Sum_probs=11.9
Q ss_pred cchhhHHHhhhccc
Q 035544 576 NGKLQQWFQEGLSG 589 (727)
Q Consensus 576 ~~~l~qwf~eg~~g 589 (727)
|-+|-+.+++.+.|
T Consensus 336 dSkLT~LLqdsLgG 349 (412)
T 3u06_A 336 NSKLTHLLMPSLGG 349 (412)
T ss_dssp GSHHHHHHGGGTST
T ss_pred ccHHHHHHHHhcCC
Confidence 66999999999866
No 153
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=41.34 E-value=94 Score=30.36 Aligned_cols=36 Identities=19% Similarity=0.121 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
..+|..+.+|+..+..|...-..|+.|+..|..+|.
T Consensus 44 ~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~ 79 (168)
T 3o0z_A 44 SQLESLNRELQERNRILENSKSQTDKDYYQLQAILE 79 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555655555554
No 154
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=41.32 E-value=59 Score=32.76 Aligned_cols=26 Identities=8% Similarity=0.220 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFF 270 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~L 270 (727)
.|+.|+.++..|+.+|.+|+.-+..+
T Consensus 123 ~ie~l~eEi~~LkeEn~eLkeLae~~ 148 (209)
T 2wvr_A 123 EIEQKDNEIARLKKENKELAEVAEHV 148 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555444333
No 155
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=40.60 E-value=34 Score=30.97 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 252 KVRNMHSTIADLNSKISFFMAENASLK 278 (727)
Q Consensus 252 KVk~LEsENqeLr~qls~LqaEN~~LR 278 (727)
+++....++..|+.++..|+.|...+|
T Consensus 90 ~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 90 KYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444455666666666666665554
No 156
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=40.50 E-value=62 Score=28.51 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 256 MHSTIADLNSKISFFMAENASLKQ 279 (727)
Q Consensus 256 LEsENqeLr~qls~LqaEN~~LRq 279 (727)
|..++..++.++..|..||..|+.
T Consensus 43 Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 43 LHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555555543
No 157
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=39.99 E-value=15 Score=33.86 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKIS 268 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls 268 (727)
.-+++|+.+++.|+-||..|++++.
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3479999999999999999999886
No 158
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=39.82 E-value=16 Score=33.18 Aligned_cols=38 Identities=11% Similarity=0.198 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
+||..|+.+++.|+.+ ..+...|+.+|..|..+++.+.
T Consensus 74 eYIk~Lq~~~~~l~~~----~~~~~~l~~~n~~L~~riqeLE 111 (118)
T 4ati_A 74 DYIRKLQREQQRAKDL----ENRQKKLEHANRHLLLRVQELE 111 (118)
T ss_dssp HHHHHHHHHHHHHHHH----CC--------------------
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444322 1234456677777777666544
No 159
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=39.66 E-value=54 Score=28.88 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 255 NMHSTIADLNSKISFFMAENASLKQQ 280 (727)
Q Consensus 255 ~LEsENqeLr~qls~LqaEN~~LRqQ 280 (727)
.|..++..|+.++..|+.||..||..
T Consensus 50 ~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 50 KLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555543
No 160
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=39.27 E-value=59 Score=35.34 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNA 286 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a 286 (727)
.+..||..+...+.++..|+.++..++.....|++++..+..
T Consensus 92 ~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 92 EIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 455667777777778888888888888888888888776443
No 161
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=38.31 E-value=76 Score=29.24 Aligned_cols=38 Identities=13% Similarity=0.223 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHh
Q 035544 245 YVEELEDKVRNMHSTIA-------DLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 245 YVeeLE~KVk~LEsENq-------eLr~qls~LqaEN~~LRqQL~ 282 (727)
.|.-|++++..+..... +|..+.+.|+.++..|..|+.
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44455555544443222 244444555555555555544
No 162
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=37.67 E-value=1.1e+02 Score=27.08 Aligned_cols=26 Identities=23% Similarity=0.116 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 258 STIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 258 sENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.||.+|..++.+|+.|+..||+.+..
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~e 71 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKE 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667777777777777777666554
No 163
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=37.37 E-value=1.6e+02 Score=29.23 Aligned_cols=6 Identities=50% Similarity=0.872 Sum_probs=2.7
Q ss_pred ceEEEE
Q 035544 412 GRVLTI 417 (727)
Q Consensus 412 ~rv~~v 417 (727)
||+|..
T Consensus 229 gRIL~~ 234 (256)
T 3na7_A 229 GRILYA 234 (256)
T ss_dssp CCEEEC
T ss_pred CeeEEe
Confidence 444443
No 164
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=37.30 E-value=1.6e+02 Score=25.42 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 241 RKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 241 RKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
-|.+.|..|++.++--.+....|..++-.|.-||.-|+++|....
T Consensus 29 ~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 29 SKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 356677888877776666667788888899999999999987643
No 165
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=37.29 E-value=22 Score=31.78 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 252 KVRNMHSTIADLNSKISFFMAENASLKQ 279 (727)
Q Consensus 252 KVk~LEsENqeLr~qls~LqaEN~~LRq 279 (727)
+.++|+.+..+|++++..+++|+..|++
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4566666777777777777777776665
No 166
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=36.98 E-value=1.6e+02 Score=25.93 Aligned_cols=32 Identities=9% Similarity=0.233 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 239 RQRKKHYVEELEDKVRNMHSTIADLNSKISFF 270 (727)
Q Consensus 239 RqRKKqYVeeLE~KVk~LEsENqeLr~qls~L 270 (727)
..+-.+.+..||..-..+..++..|+.+...|
T Consensus 20 E~~L~~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 20 EERLIQELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555544
No 167
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=36.63 E-value=1.2e+02 Score=24.60 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMA 272 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~Lqa 272 (727)
..+++|+.+...|+.++..|+.++..|..
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666543
No 168
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=36.50 E-value=34 Score=41.08 Aligned_cols=15 Identities=7% Similarity=0.155 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 035544 256 MHSTIADLNSKISFF 270 (727)
Q Consensus 256 LEsENqeLr~qls~L 270 (727)
++.+..+|+.+++.+
T Consensus 918 l~~~~~~Le~~l~el 932 (1184)
T 1i84_S 918 LAAKKQELEEILHEM 932 (1184)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 169
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=36.40 E-value=13 Score=27.21 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 260 IADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 260 NqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
.++|.+++.+.++||-.|.|.+.++.
T Consensus 3 vaqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45667777777888888877776643
No 170
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=36.27 E-value=61 Score=25.97 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 247 EELEDKVRNMHSTIADLNSKISFF 270 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~L 270 (727)
+.|+.+...|..++..|+.++..|
T Consensus 32 ~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 32 EDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 171
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=36.18 E-value=56 Score=32.72 Aligned_cols=39 Identities=3% Similarity=0.214 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.++.|+.++..|+.++.+|+.++..+++|...+|.+..+
T Consensus 60 e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~r 98 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQ 98 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777777777777777766655
No 172
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.18 E-value=58 Score=35.19 Aligned_cols=40 Identities=8% Similarity=0.094 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
++.||++.+.|+.|+..|+.++..++.|...++.++....
T Consensus 51 lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 51 LKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4456666666666666677777777777777777766544
No 173
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=36.12 E-value=52 Score=28.22 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=15.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Q 035544 228 LMRNRESAQLSRQRKKHYVEELE 250 (727)
Q Consensus 228 llRNRESAqrSRqRKKqYVeeLE 250 (727)
..+|+..|-.+=+|||.|-..|+
T Consensus 40 ~~knK~~Al~aLkrKK~~E~qL~ 62 (79)
T 4abm_A 40 GTKNKRAALQALKRKKRYEKQLA 62 (79)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHhHHHHHHH
Confidence 35577777777777777654443
No 174
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.92 E-value=57 Score=35.26 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 035544 242 KKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNA 286 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a 286 (727)
+++.++++|.+++.+++....|+.+...|..+...|+.++..+..
T Consensus 23 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~~ 67 (405)
T 4b4t_J 23 FEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQE 67 (405)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334566677777666666667777777777777777777765443
No 175
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=35.71 E-value=1e+02 Score=26.22 Aligned_cols=22 Identities=14% Similarity=0.478 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKI 267 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~ql 267 (727)
++.||.++..|+.+...|..++
T Consensus 24 le~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555444
No 176
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=35.55 E-value=47 Score=35.71 Aligned_cols=30 Identities=7% Similarity=0.003 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 254 RNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 254 k~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+.|.++..+|+.++..|+++...+.++|..
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666666666655
No 177
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=35.38 E-value=1.9e+02 Score=32.55 Aligned_cols=16 Identities=13% Similarity=0.273 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 035544 237 LSRQRKKHYVEELEDK 252 (727)
Q Consensus 237 rSRqRKKqYVeeLE~K 252 (727)
..+++.++.-+.+|++
T Consensus 505 ~l~~~~~~~~~~~~~~ 520 (592)
T 1f5n_A 505 MLHEMQRKNEQMMEQK 520 (592)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 178
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=35.01 E-value=2.8e+02 Score=29.20 Aligned_cols=55 Identities=16% Similarity=0.122 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035544 234 SAQLSRQRKKHYVEELEDKVRNM----------------------HSTIADLNSKISFFMAENASLKQQLSGSNAMP 288 (727)
Q Consensus 234 SAqrSRqRKKqYVeeLE~KVk~L----------------------EsENqeLr~qls~LqaEN~~LRqQL~~~~a~p 288 (727)
-+++-=..|++.++.|+..+..- ..+.+.|+..-..|+++...|++.|..++.-.
T Consensus 320 ~~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 396 (406)
T 4dyl_A 320 VATEMVFRRQEMVTQLQQELRNEEENTHPRERVQLLGKRQVLQEALQGLQVALCSQAKLQAQQELLQTKLEHLGPGE 396 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444556777777777766432 22334455556677888888888888887544
No 179
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=34.66 E-value=15 Score=38.78 Aligned_cols=40 Identities=15% Similarity=0.103 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
.|..||.++..+++++..|+..+..++++...|++++..+
T Consensus 5 ~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l 44 (319)
T 1fzc_C 5 EIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQL 44 (319)
T ss_dssp -----CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777777777766553
No 180
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=34.17 E-value=1.3e+02 Score=29.16 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 035544 239 RQRKKHYVEELEDKVRNM 256 (727)
Q Consensus 239 RqRKKqYVeeLE~KVk~L 256 (727)
-++|++|+++|+.+...+
T Consensus 21 I~~K~~~LqeL~~Q~vaf 38 (155)
T 2aze_A 21 IKQKQSQLQELILQQIAF 38 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 367889999998876655
No 181
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=33.96 E-value=80 Score=31.02 Aligned_cols=39 Identities=13% Similarity=0.259 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 235 AQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAE 273 (727)
Q Consensus 235 AqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaE 273 (727)
|-++-.+.+..++.||.++.....++..+++.+.+...|
T Consensus 133 AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl~e 171 (175)
T 3mud_A 133 CLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTLLE 171 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555556666666666666666665555544433
No 182
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=33.90 E-value=62 Score=35.24 Aligned_cols=30 Identities=13% Similarity=0.199 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 254 RNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 254 k~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+.|.++..+|+.++..|+++...+.++|..
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 72 DELLAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666777777777777666665
No 183
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.86 E-value=38 Score=36.77 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 242 KKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQ 279 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRq 279 (727)
|....++||.+++.++.+...|++++..++.|...|++
T Consensus 63 ~l~~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 100 (437)
T 4b4t_L 63 KLLEHRRYDDQLKQRRQNIRDLEKLYDKTENDIKALQS 100 (437)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344678888888888888888888877777766654
No 184
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=33.61 E-value=1.5e+02 Score=23.10 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 258 STIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 258 sENqeLr~qls~LqaEN~~LRqQL 281 (727)
....++.+.+...+.+...|+.++
T Consensus 33 ~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 33 EKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444555555555544
No 185
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=33.60 E-value=2.1e+02 Score=29.24 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=13.4
Q ss_pred HHHHHHhHHHH-HHHHHHHHHHHHH
Q 035544 225 KARLMRNRESA-QLSRQRKKHYVEE 248 (727)
Q Consensus 225 ~RRllRNRESA-qrSRqRKKqYVee 248 (727)
.-.-+||||.. +.+|.||+.-..+
T Consensus 95 ~LK~IR~~E~svqp~R~~R~~l~~~ 119 (234)
T 3plt_A 95 TLKSIRNIEASVQPSRDRKEKITDE 119 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34567888866 4455554443333
No 186
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=33.41 E-value=1e+02 Score=32.99 Aligned_cols=47 Identities=9% Similarity=0.065 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 237 LSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 237 rSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+..+..++++++|+.+++.|+++..+.+.....|..+.+.||..+.-
T Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV 63 (403)
T 4etp_A 17 EKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRV 63 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 33455667777888888887777777777777777777777776655
No 187
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=33.40 E-value=98 Score=27.95 Aligned_cols=22 Identities=9% Similarity=0.184 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 035544 259 TIADLNSKISFFMAENASLKQQ 280 (727)
Q Consensus 259 ENqeLr~qls~LqaEN~~LRqQ 280 (727)
++..|++.+.....-...|..+
T Consensus 70 di~~lrK~lD~~~l~r~dLE~~ 91 (119)
T 3ol1_A 70 TLQSFRQDVDNASLARLDLERK 91 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccHHHHHHHHHHHH
Confidence 3333443333333333333333
No 188
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=33.26 E-value=72 Score=24.38 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 255 NMHSTIADLNSKISFFMAENASLK 278 (727)
Q Consensus 255 ~LEsENqeLr~qls~LqaEN~~LR 278 (727)
.|..++.+-.+++..|+.||..|+
T Consensus 11 kLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 11 KLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344444444555555556665554
No 189
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=33.18 E-value=2.8e+02 Score=26.85 Aligned_cols=19 Identities=37% Similarity=0.357 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 035544 265 SKISFFMAENASLKQQLSG 283 (727)
Q Consensus 265 ~qls~LqaEN~~LRqQL~~ 283 (727)
.++..|..|...||++|..
T Consensus 113 akI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777655
No 190
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=32.70 E-value=1e+02 Score=27.42 Aligned_cols=23 Identities=9% Similarity=0.211 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 035544 251 DKVRNMHSTIADLNSKISFFMAE 273 (727)
Q Consensus 251 ~KVk~LEsENqeLr~qls~LqaE 273 (727)
.+++.|+.....|++.+..++++
T Consensus 95 ~r~~~l~~~~~~l~~~l~~l~~~ 117 (133)
T 1fxk_C 95 SQKNELESTLQKMGENLRAITDI 117 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 191
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=32.66 E-value=1.2e+02 Score=24.21 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+.-|..|+.|+.++..|...+..-..++..+.+.|..
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666666544
No 192
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=32.42 E-value=2.1e+02 Score=23.46 Aligned_cols=49 Identities=16% Similarity=0.216 Sum_probs=29.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 227 RLMRNRESAQLSRQRKKHYVEELEDKV-------RNMHSTIADLNSKISFFMAENASLK 278 (727)
Q Consensus 227 RllRNRESAqrSRqRKKqYVeeLE~KV-------k~LEsENqeLr~qls~LqaEN~~LR 278 (727)
-..+||+-|-.-=+.| +++|...+ ...+.|+.+|++++..|+.|...||
T Consensus 21 ia~knr~EaE~~y~~k---~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 21 VAAKNLQEAEEWYKSK---FADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4556666554433333 34444433 3445677778888888888877776
No 193
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=32.39 E-value=2.3e+02 Score=29.89 Aligned_cols=34 Identities=6% Similarity=0.044 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 237 LSRQRKKHYVEELEDKVRNMHSTIADLNSKISFF 270 (727)
Q Consensus 237 rSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~L 270 (727)
+--+..++.++.|+++.+.++.++.++..++...
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKLNGEADLALASA 468 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhc
Confidence 3333334444444444444444444444444433
No 194
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=32.29 E-value=1e+02 Score=37.03 Aligned_cols=23 Identities=9% Similarity=0.049 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 035544 261 ADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 261 qeLr~qls~LqaEN~~LRqQL~~ 283 (727)
..|..++..|+.+...|..++..
T Consensus 916 ~~l~~~~~~Le~~l~ele~elee 938 (1184)
T 1i84_S 916 VRLAAKKQELEEILHEMEARIEE 938 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555554433
No 195
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=32.15 E-value=77 Score=35.15 Aligned_cols=29 Identities=10% Similarity=0.200 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 255 NMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 255 ~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.|.++..+|+.++..|+++...|.++|..
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666554
No 196
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=31.62 E-value=67 Score=32.00 Aligned_cols=9 Identities=33% Similarity=0.549 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 035544 273 ENASLKQQL 281 (727)
Q Consensus 273 EN~~LRqQL 281 (727)
||..+..-|
T Consensus 69 e~i~i~~DL 77 (190)
T 4emc_A 69 ENSEVIKDL 77 (190)
T ss_dssp HHHHHHHHH
T ss_pred HhhhHHHHH
Confidence 344443333
No 197
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=31.54 E-value=91 Score=25.06 Aligned_cols=35 Identities=11% Similarity=0.222 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKISFFMAENASL 277 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~L 277 (727)
+..+..|..+...|.....+.+.+|..|.+|...|
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456676777777777777777777777776655
No 198
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=31.53 E-value=1.2e+02 Score=27.52 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAM 287 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~ 287 (727)
++...+|..++..|+.|--.|..++..-.-|...|++++..++.+
T Consensus 48 ~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dlgKf 92 (106)
T 1j1d_B 48 REKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDNQKV 92 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 455677777777788888888888888889999999999988655
No 199
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=31.05 E-value=63 Score=33.51 Aligned_cols=34 Identities=32% Similarity=0.309 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKISFFMAENAS 276 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~ 276 (727)
.+.++.|+++.+.|++|.++|+++.+.+...|..
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~ 217 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKANAE 217 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 4466777777777777777776666665554433
No 200
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=31.00 E-value=3.1e+02 Score=25.08 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLK 278 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LR 278 (727)
+..|+.++..|...+..|..++..|+..|-.|-
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLE 69 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 69 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 455666677777777777777777777666664
No 201
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=30.84 E-value=3.1e+02 Score=25.02 Aligned_cols=39 Identities=21% Similarity=0.288 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.+.+--+++++++.+.++|-.++-.++.|...|+..+.-
T Consensus 70 QI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~~~ 108 (114)
T 2xzr_A 70 QINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLIKL 108 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344444555666666677777777778888888877654
No 202
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=30.30 E-value=68 Score=30.34 Aligned_cols=31 Identities=6% Similarity=0.021 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENAS 276 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~ 276 (727)
+..||+++..++.+...++.++..|+.+...
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (192)
T 2gkw_A 2 TGLLESQLSRHDQMLSVHDIRLADMDLRFQV 32 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666555555555544444333
No 203
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=30.23 E-value=98 Score=25.84 Aligned_cols=13 Identities=15% Similarity=0.414 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 035544 269 FFMAENASLKQQL 281 (727)
Q Consensus 269 ~LqaEN~~LRqQL 281 (727)
.|+.++..|++++
T Consensus 61 ~L~~~~~~L~~e~ 73 (80)
T 1hlo_A 61 YMRRKNHTHQQDI 73 (80)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 204
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=30.11 E-value=3.2e+02 Score=27.01 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 035544 260 IADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 260 NqeLr~qls~LqaEN~~LRqQL 281 (727)
...|+.++..|+.++..|+.+|
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~i 111 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYV 111 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 205
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=30.01 E-value=3.4e+02 Score=26.20 Aligned_cols=42 Identities=21% Similarity=0.265 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 240 QRKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 240 qRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
.+.+..+.+|+..++.-...++.|+.++..|+.++..|.+++
T Consensus 78 ~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl 119 (152)
T 3a7p_A 78 KSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKL 119 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555554444444444444444444444444444443
No 206
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=29.25 E-value=72 Score=24.05 Aligned_cols=19 Identities=11% Similarity=0.219 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035544 251 DKVRNMHSTIADLNSKISF 269 (727)
Q Consensus 251 ~KVk~LEsENqeLr~qls~ 269 (727)
+.+.+|+.+|..|+.++..
T Consensus 14 qDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 14 QDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 3444455555555555443
No 207
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=29.18 E-value=1.9e+02 Score=24.76 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 249 LEDKVRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 249 LE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
||.+|..|+....+-+.+-..++.|...|-++|
T Consensus 19 Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~L 51 (72)
T 3cve_A 19 LEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEIL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333444444444433
No 208
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=28.88 E-value=69 Score=29.47 Aligned_cols=38 Identities=16% Similarity=0.354 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
++.|+..++.|+.....++.++..++...+.|.+++..
T Consensus 107 i~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~~ 144 (151)
T 2zdi_C 107 LKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQSM 144 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777778888888888888888877777665543
No 209
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=28.74 E-value=67 Score=30.37 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC
Q 035544 261 ADLNSKISFFMAENASLKQQLSGSNA 286 (727)
Q Consensus 261 qeLr~qls~LqaEN~~LRqQL~~~~a 286 (727)
+.|.+|+..|.++...|++|.....+
T Consensus 108 e~ls~qL~~ls~~v~~L~~q~~~~~~ 133 (140)
T 3iyn_Q 108 DSLTRELNVVSQQLLDLRQQVSALKA 133 (140)
T ss_dssp HHHHHHHHHHHHHHHTHHHHTTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444444444444555555554433
No 210
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=28.45 E-value=3.5e+02 Score=24.89 Aligned_cols=57 Identities=16% Similarity=0.268 Sum_probs=40.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH--------------HHHHHHHHHHHHHhc
Q 035544 227 RLMRNRESAQLSRQRKKHYVEELEDKVRNMHS---TIADLNSKIS--------------FFMAENASLKQQLSG 283 (727)
Q Consensus 227 RllRNRESAqrSRqRKKqYVeeLE~KVk~LEs---ENqeLr~qls--------------~LqaEN~~LRqQL~~ 283 (727)
-+..|=.+|.+.=..|...+++|.+++..++. ++.-|+.|+. .+..|...|.++|..
T Consensus 28 ~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~ 101 (110)
T 2v4h_A 28 DLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQ 101 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHH
Confidence 35556677888888888888888888887776 5555666654 356667777777754
No 211
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=28.07 E-value=86 Score=31.95 Aligned_cols=39 Identities=18% Similarity=0.121 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhcc
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQ---LSGS 284 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQ---L~~~ 284 (727)
++++|..+..+..+..+|.+++..|+++...|+++ +...
T Consensus 94 ~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L 135 (357)
T 3rrk_A 94 LEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKL 135 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 56677777777777777788888888888888777 5543
No 212
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=27.77 E-value=1.5e+02 Score=27.08 Aligned_cols=46 Identities=20% Similarity=0.230 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhccCCCC
Q 035544 243 KHYVEELEDKVRNMHSTIAD-------LNSKISFFMAENASLKQQLSGSNAMP 288 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqe-------Lr~qls~LqaEN~~LRqQL~~~~a~p 288 (727)
|-.++++|+.+.++..++.+ ++..+..|+.+...|+.+|.+.....
T Consensus 36 KD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~LI 88 (103)
T 4h22_A 36 KDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEML 88 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666555554443 45555667778888888888766554
No 213
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=27.70 E-value=1.3e+02 Score=22.93 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 035544 265 SKISFFMAENASLKQQLS 282 (727)
Q Consensus 265 ~qls~LqaEN~~LRqQL~ 282 (727)
.++..|+++|..|..++.
T Consensus 20 dkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 20 DKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555555555543
No 214
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=27.60 E-value=1.4e+02 Score=40.34 Aligned_cols=42 Identities=17% Similarity=0.265 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 241 RKKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 241 RKKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
..++.+++++++++.++++.++|+++.+.+.+|.+.|++++.
T Consensus 2025 ~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~ 2066 (3245)
T 3vkg_A 2025 ELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESS 2066 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555666666666666666777777766666554
No 215
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=27.41 E-value=2.1e+02 Score=32.26 Aligned_cols=24 Identities=25% Similarity=0.170 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 232 RESAQLSRQRKKHYVEELEDKVRN 255 (727)
Q Consensus 232 RESAqrSRqRKKqYVeeLE~KVk~ 255 (727)
+++|++.++.-.+...++|+.++.
T Consensus 496 ~e~~~~~~~~l~~~~~~~~~~~~~ 519 (592)
T 1f5n_A 496 AESAQASAKMLHEMQRKNEQMMEQ 519 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 216
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=27.29 E-value=1.7e+02 Score=32.51 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=18.4
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 257 HST-IADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 257 EsE-NqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.++ ..+|+.++..|+++...|.++|..
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~ 136 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDK 136 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 666777777777777777777765
No 217
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=27.03 E-value=94 Score=28.82 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 241 RKKHYVEELEDKVRNMHSTIADLNSKI 267 (727)
Q Consensus 241 RKKqYVeeLE~KVk~LEsENqeLr~ql 267 (727)
+.++.++.++++++.|..+.++|++++
T Consensus 135 ~~~~~~~~l~~~i~~L~~~l~~le~~~ 161 (166)
T 3pjs_K 135 SEKAAEEAYTRTTRALHERFDRLERML 161 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555556555555555554443
No 218
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=26.73 E-value=1.7e+02 Score=25.78 Aligned_cols=33 Identities=27% Similarity=0.321 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 251 DKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 251 ~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.+++.-..|.+.|++++..-.+|...|..+|..
T Consensus 47 kKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 47 WKLKATKAEVAQLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 344444568888999999999999999998864
No 219
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=26.72 E-value=1.6e+02 Score=28.22 Aligned_cols=11 Identities=27% Similarity=0.262 Sum_probs=4.8
Q ss_pred HHHHHHHHHhc
Q 035544 273 ENASLKQQLSG 283 (727)
Q Consensus 273 EN~~LRqQL~~ 283 (727)
....|.+++..
T Consensus 92 ~k~~l~~ql~q 102 (150)
T 4dci_A 92 QKRNLLQQQAQ 102 (150)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 220
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=26.70 E-value=75 Score=26.30 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNS 265 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~ 265 (727)
++.||..+.+.++|+.+|.+
T Consensus 27 v~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 27 IQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 221
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=26.64 E-value=84 Score=28.46 Aligned_cols=28 Identities=11% Similarity=0.068 Sum_probs=14.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 035544 226 ARLMRNRESAQLSRQRKKHYVEELEDKV 253 (727)
Q Consensus 226 RRllRNRESAqrSRqRKKqYVeeLE~KV 253 (727)
.|+...-.+.++-|.+=..++.+|..-|
T Consensus 26 ~kr~~Hn~~ERrRR~~In~~~~~L~~lv 53 (118)
T 4ati_A 26 QKKDNHNLIERRRRFNINDRIKELGTLI 53 (118)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444556666666667777776644
No 222
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.49 E-value=3.6e+02 Score=24.30 Aligned_cols=20 Identities=20% Similarity=0.092 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 035544 264 NSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 264 r~qls~LqaEN~~LRqQL~~ 283 (727)
+.....++..|..|+.||..
T Consensus 75 r~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 75 RKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44455667788999998864
No 223
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=26.36 E-value=2.1e+02 Score=30.85 Aligned_cols=63 Identities=10% Similarity=0.195 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 035544 219 EEEMKRKARLMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKISFFMAE-NASLKQQL 281 (727)
Q Consensus 219 EkEeKR~RRllRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls~LqaE-N~~LRqQL 281 (727)
.+-+|.+.+..+.+..|.++++.-+..|+.++..-..++.+...+-.+++.|+.+ ...||+.|
T Consensus 185 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~lEeeRi~~lK~~L 248 (486)
T 3haj_A 185 EQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVL 248 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777888888887777777777665555555555544444444333 33333333
No 224
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=26.33 E-value=1.1e+02 Score=30.91 Aligned_cols=23 Identities=9% Similarity=0.161 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 035544 252 KVRNMHSTIADLNSKISFFMAEN 274 (727)
Q Consensus 252 KVk~LEsENqeLr~qls~LqaEN 274 (727)
+...+.+..++.+++++.+++.-
T Consensus 193 e~~s~~~~~~~~~~~~~~~~~~~ 215 (228)
T 3q0x_A 193 DRDSMVAQLAQCRQQLAQLREQY 215 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433
No 225
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=25.94 E-value=25 Score=28.50 Aligned_cols=23 Identities=17% Similarity=0.528 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 035544 242 KKHYVEELEDKVRNMHSTIADLN 264 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsENqeLr 264 (727)
++.|++.||.++..||.....|+
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Confidence 56789999999998887666553
No 226
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=25.42 E-value=1.3e+02 Score=29.88 Aligned_cols=29 Identities=10% Similarity=0.135 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 242 KKHYVEELEDKVRNMHSTIADLNSKISFF 270 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsENqeLr~qls~L 270 (727)
-++.+..|..++..|+.++.+|..+++.+
T Consensus 137 ~~~~~~~L~~e~~~l~~~~~~l~~qlE~~ 165 (213)
T 1ik9_A 137 NQAKNEHLQKENERLLRDWNDVQGRFEKA 165 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555544
No 227
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=25.41 E-value=3.1e+02 Score=30.37 Aligned_cols=57 Identities=9% Similarity=0.018 Sum_probs=37.9
Q ss_pred HHHHhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 227 RLMRNRESAQLSRQRKK---------HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 227 RllRNRESAqrSRqRKK---------qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
|.+||..|.+--..+|+ +-.++|-.+++.|..+..+|..++..++++...+-..|.+
T Consensus 90 ~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN 155 (501)
T 1wle_A 90 EEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPN 155 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34555555554443332 3566788888888888888888888888877665554433
No 228
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=24.99 E-value=1.3e+02 Score=26.35 Aligned_cols=28 Identities=11% Similarity=0.211 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMA 272 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~Lqa 272 (727)
.+.++|.+.+.|+..|..|..+++.|+.
T Consensus 50 r~~e~e~r~k~le~~n~~l~~riqELE~ 77 (83)
T 4ath_A 50 RAKDLENRQKKLEHANRHLLLRVQELEM 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3445556666666666666666655544
No 229
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=24.89 E-value=52 Score=23.90 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 035544 262 DLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 262 eLr~qls~LqaEN~~LRqQL~~ 283 (727)
+|..-+..|++||.+|+..+.+
T Consensus 3 qlnallasleaenkqlkakvee 24 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVEE 24 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555667777777777776544
No 230
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=24.80 E-value=91 Score=26.41 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAMP 288 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~p 288 (727)
++|-..++.-...+.+|+..+..-.+|++.||.+|.+..+.-
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444455556667788888888899999999998866553
No 231
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=24.72 E-value=48 Score=33.54 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 035544 248 ELEDKVRNMHSTIADLNSKISF 269 (727)
Q Consensus 248 eLE~KVk~LEsENqeLr~qls~ 269 (727)
++..++++|+.+|++|+++++.
T Consensus 152 ~~~~~i~ql~~En~~le~~Ie~ 173 (250)
T 2ve7_C 152 SSADKMQQLNAAHQEALMKLER 173 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444443333333
No 232
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=24.52 E-value=87 Score=23.93 Aligned_cols=25 Identities=24% Similarity=0.131 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 258 STIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 258 sENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
+||.+|...+++-..|.+.||+.-.
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~ 31 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENK 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 5777888888888888888877643
No 233
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=24.50 E-value=2e+02 Score=25.39 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADL 263 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeL 263 (727)
++.++.++..|+.+|.+|
T Consensus 47 ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 47 IEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 234
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.02 E-value=68 Score=34.65 Aligned_cols=34 Identities=12% Similarity=0.065 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQ 279 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRq 279 (727)
++.|+.+.+.++.+...|++++..+++|...|++
T Consensus 58 ~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 58 YELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3555556667777778888888888888777765
No 235
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=23.95 E-value=2e+02 Score=25.65 Aligned_cols=16 Identities=25% Similarity=0.275 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhccC
Q 035544 270 FMAENASLKQQLSGSN 285 (727)
Q Consensus 270 LqaEN~~LRqQL~~~~ 285 (727)
-+.|...||.+|...+
T Consensus 73 YEeEI~rLr~eLe~r~ 88 (92)
T 3vp9_A 73 YEEEIKHLKLGLEQRD 88 (92)
T ss_dssp HHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHcC
Confidence 3778888888887644
No 236
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=23.88 E-value=1e+02 Score=28.34 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
..+-|+++.+.|+++.++|++.+..|......+++.+...
T Consensus 96 ~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~ 135 (148)
T 3gpv_A 96 RLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISSA 135 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455666666666666666666666666666666655443
No 237
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=23.75 E-value=2.5e+02 Score=22.94 Aligned_cols=13 Identities=38% Similarity=0.603 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 035544 246 VEELEDKVRNMHS 258 (727)
Q Consensus 246 VeeLE~KVk~LEs 258 (727)
+.+||.++..++.
T Consensus 8 ~~~le~kl~~lEn 20 (65)
T 3m0d_C 8 LAELEGKLRVFEN 20 (65)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 238
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=23.42 E-value=2.5e+02 Score=21.84 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGS 284 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~ 284 (727)
+.+|..-+++|+..|++|+.--+.|.-....|.-.|..|
T Consensus 5 vkelknyiqeleernaelknlkehlkfakaelefelaah 43 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLKFAKAELEFELAAH 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 567777778888888887776666666666666666654
No 239
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=23.12 E-value=1.8e+02 Score=30.72 Aligned_cols=37 Identities=5% Similarity=0.042 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035544 246 VEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 246 VeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~ 282 (727)
|...+.+++.|+.+...++.+|..|+.+...|++++.
T Consensus 21 i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 21 GVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444666666666666777777777777777776654
No 240
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=23.11 E-value=96 Score=28.43 Aligned_cols=32 Identities=19% Similarity=0.157 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLK 278 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LR 278 (727)
++|..+++.|..++.+|+++++.|+.+....+
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777777777777777777777765543
No 241
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=22.75 E-value=1.6e+02 Score=25.35 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 248 ELEDKVRNMHSTIADLNSKISFFMAENAS 276 (727)
Q Consensus 248 eLE~KVk~LEsENqeLr~qls~LqaEN~~ 276 (727)
.|+.+++.|+.+...++.++..++.+...
T Consensus 81 ~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 81 TLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555554433
No 242
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=22.69 E-value=1.3e+02 Score=26.22 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 247 EELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 247 eeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
.+|-.+|.+|..|...|+.++..+++-...|++++..
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~e 69 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRE 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666667777767776666666666666666554
No 243
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=22.66 E-value=4.4e+02 Score=24.07 Aligned_cols=48 Identities=21% Similarity=0.389 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Q 035544 235 AQLSRQRKKHYVEELEDKVRNMHSTI-------ADLNSKISFFMAENASLKQQLS 282 (727)
Q Consensus 235 AqrSRqRKKqYVeeLE~KVk~LEsEN-------qeLr~qls~LqaEN~~LRqQL~ 282 (727)
-+..++.=+.|+-+||++.-.|+... ..+..++......|+-|-..|.
T Consensus 47 lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 47 TRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666665433 2344555555555666655543
No 244
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=22.55 E-value=1.4e+02 Score=31.34 Aligned_cols=20 Identities=15% Similarity=0.429 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035544 244 HYVEELEDKVRNMHSTIADL 263 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeL 263 (727)
+|+++|+++++.|+++..+|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~ 266 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKA 266 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666555
No 245
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=22.45 E-value=4e+02 Score=24.02 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQ 280 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQ 280 (727)
.++.|..++.+|..........+..+-.+|+.|...
T Consensus 19 e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~ 54 (125)
T 1joc_A 19 EIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIK 54 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 345555555555444444333344444555555443
No 246
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=22.22 E-value=1e+02 Score=30.41 Aligned_cols=29 Identities=10% Similarity=0.032 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMAE 273 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~LqaE 273 (727)
.+.+|..++..|+++|+.|+.+.....++
T Consensus 153 ~~~~L~~~n~~LqkeNeRL~~E~n~~l~q 181 (184)
T 3w03_C 153 TIAENQAKNEHLQKENERLLRDWNDVQGR 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888999999988887776654
No 247
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=22.02 E-value=71 Score=28.48 Aligned_cols=27 Identities=15% Similarity=0.290 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC
Q 035544 261 ADLNSKISFFMAENASLKQQLSGSNAM 287 (727)
Q Consensus 261 qeLr~qls~LqaEN~~LRqQL~~~~a~ 287 (727)
.+|+.++..|+.|...|+++|......
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~~~ 36 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLRSP 36 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 567888888888888888888876654
No 248
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=21.74 E-value=93 Score=32.75 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 252 KVRNMHSTIADLNSKISFFMAENASLKQ 279 (727)
Q Consensus 252 KVk~LEsENqeLr~qls~LqaEN~~LRq 279 (727)
.++.|+.+..+|+++|..|+.+...|+.
T Consensus 29 ~I~~Lq~~le~L~~KI~~LE~~v~~q~~ 56 (323)
T 1lwu_B 29 SLRSMKSVLEHLRAKMQRMEEAIKTQKE 56 (323)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555566666666555544444
No 249
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=21.73 E-value=2.1e+02 Score=31.26 Aligned_cols=45 Identities=16% Similarity=0.089 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSNAMP 288 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~a~p 288 (727)
+.+..||.-+...+.++..|+..+.......+.|++.+..+...|
T Consensus 91 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~ 135 (411)
T 3ghg_C 91 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 135 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445666666677777888888888888888888887755544
No 250
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=21.67 E-value=4.6e+02 Score=23.90 Aligned_cols=58 Identities=14% Similarity=0.323 Sum_probs=31.3
Q ss_pred HHHHHhHHHHH--------HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 226 ARLMRNRESAQ--------LSRQRKK--HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 226 RRllRNRESAq--------rSRqRKK--qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+|.-+|+.|-+ ..|.-.+ +++.....++.+-.+|..++..+.+.|...|-.|...+..
T Consensus 34 ~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar 101 (114)
T 2xzr_A 34 GRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIAR 101 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45666776655 3333222 3344444444444455555666666666667666666554
No 251
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=21.65 E-value=1.4e+02 Score=30.04 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 253 VRNMHSTIADLNSKISFFMAENASLKQQL 281 (727)
Q Consensus 253 Vk~LEsENqeLr~qls~LqaEN~~LRqQL 281 (727)
.+.|..++..|+.++..|..||..||...
T Consensus 117 N~~Lh~~ie~l~eEi~~LkeEn~eLkeLa 145 (209)
T 2wvr_A 117 NEKLHKEIEQKDNEIARLKKENKELAEVA 145 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666665543
No 252
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=21.45 E-value=1.6e+02 Score=27.19 Aligned_cols=33 Identities=6% Similarity=0.202 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 251 DKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 251 ~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
++++.|+.||....+++.....|...|..++..
T Consensus 92 ~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 124 (132)
T 1ykh_B 92 RKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDS 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666555543
No 253
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=21.18 E-value=4.2e+02 Score=23.21 Aligned_cols=41 Identities=10% Similarity=0.194 Sum_probs=22.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 228 LMRNRESAQLSRQRKKHYVEELEDKVRNMHSTIADLNSKIS 268 (727)
Q Consensus 228 llRNRESAqrSRqRKKqYVeeLE~KVk~LEsENqeLr~qls 268 (727)
+......|...+.++-+.|..|..+++.++.+...++.++.
T Consensus 28 ~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 28 AEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555566666666666666666655554444333
No 254
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=20.95 E-value=2.2e+02 Score=31.12 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhc
Q 035544 242 KKHYVEELEDKVRNMHSTI-------ADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsEN-------qeLr~qls~LqaEN~~LRqQL~~ 283 (727)
=.+|.++||++...|+..+ ..|+..|..+..++++|-..+..
T Consensus 111 ~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~ 159 (390)
T 1deq_A 111 FKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDI 159 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888887776533 33555555555555555555533
No 255
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=20.87 E-value=1.6e+02 Score=27.93 Aligned_cols=34 Identities=6% Similarity=0.162 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 250 EDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 250 E~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+++++.|+.||.+..+++.....|...|..++..
T Consensus 91 ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~ 124 (151)
T 1yke_B 91 LRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDS 124 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777777777777776665
No 256
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.72 E-value=1.1e+02 Score=23.93 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 035544 266 KISFFMAENASLKQQL 281 (727)
Q Consensus 266 qls~LqaEN~~LRqQL 281 (727)
+++.|+.....|+..|
T Consensus 28 elqalekklaalkskl 43 (48)
T 1g6u_A 28 ELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 257
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.49 E-value=1.5e+02 Score=23.29 Aligned_cols=25 Identities=16% Similarity=0.309 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 253 VRNMHSTIADLNSKISFFMAENASL 277 (727)
Q Consensus 253 Vk~LEsENqeLr~qls~LqaEN~~L 277 (727)
+..|+.|.+.|+.++..|....+.|
T Consensus 22 laaleselqalekklaalksklqal 46 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555544444
No 258
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=20.45 E-value=42 Score=27.01 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 245 YVEELEDKVRNMHSTIADLNSKISFFMAE 273 (727)
Q Consensus 245 YVeeLE~KVk~LEsENqeLr~qls~LqaE 273 (727)
.+..||.....|+..++.|+..+..|+..
T Consensus 25 ivarlendnanlekdianlekdianlerd 53 (56)
T 3he4_A 25 IVARLENDNANLEKDIANLEKDIANLERD 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 34566666677777777777777766654
No 259
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=20.44 E-value=1.5e+02 Score=30.63 Aligned_cols=16 Identities=13% Similarity=0.164 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 035544 267 ISFFMAENASLKQQLS 282 (727)
Q Consensus 267 ls~LqaEN~~LRqQL~ 282 (727)
+.+|+......++.|+
T Consensus 219 l~~Lqk~~~~~~~~LG 234 (315)
T 2ve7_A 219 LKRLQKSADLYKDRLG 234 (315)
T ss_dssp TTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcc
Confidence 3344444444444444
No 260
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=20.41 E-value=84 Score=25.64 Aligned_cols=22 Identities=9% Similarity=0.209 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 035544 243 KHYVEELEDKVRNMHSTIADLN 264 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr 264 (727)
+.|++.||.+++.||.....|.
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~ 65 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIF 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4588899999998887776654
No 261
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=20.35 E-value=1e+02 Score=27.11 Aligned_cols=8 Identities=0% Similarity=0.123 Sum_probs=3.0
Q ss_pred HHHhccCC
Q 035544 279 QQLSGSNA 286 (727)
Q Consensus 279 qQL~~~~a 286 (727)
..++..+.
T Consensus 62 g~iA~~rg 69 (85)
T 3viq_B 62 GKVAEHEK 69 (85)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 33333333
No 262
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=20.34 E-value=1.8e+02 Score=25.52 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 242 KKHYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 242 KKqYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
--+||..|.++...+.++. .+...|+..|+.|.-++++
T Consensus 37 svdYI~~Lq~e~~r~~e~e----~r~k~le~~n~~l~~riqE 74 (83)
T 4ath_A 37 SVDYIRKLQREQQRAKDLE----NRQKKLEHANRHLLLRVQE 74 (83)
T ss_dssp HHHHHHHHHHTHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHhhhhhHHHHHHHHH
Confidence 3678888877766654333 3444556666665554443
No 263
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=20.30 E-value=2.5e+02 Score=25.26 Aligned_cols=28 Identities=11% Similarity=0.260 Sum_probs=13.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035544 230 RNRESAQLSRQRKKHYVEELEDKVRNMH 257 (727)
Q Consensus 230 RNRESAqrSRqRKKqYVeeLE~KVk~LE 257 (727)
.|-.+|.+.=..|+..|++|-+.+..++
T Consensus 9 ~~L~~aEeaL~~kq~~id~lke~~~q~~ 36 (94)
T 3jsv_C 9 QQLQQAEEALVAKQELIDKLKEEAEQHK 36 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444455555555555555554444433
No 264
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=20.22 E-value=2.1e+02 Score=26.92 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSGSN 285 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~~~ 285 (727)
+...+|..++..|+.|--.|..++..-.-|...|++++..++
T Consensus 65 e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~ 106 (133)
T 1j1d_C 65 DLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHH
Confidence 334455555555666666677777777888999999998864
No 265
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=20.13 E-value=1.5e+02 Score=30.14 Aligned_cols=38 Identities=11% Similarity=0.083 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 035544 243 KHYVEELEDKVRNMHSTIADLNSKISFFMAE---NASLKQQ 280 (727)
Q Consensus 243 KqYVeeLE~KVk~LEsENqeLr~qls~LqaE---N~~LRqQ 280 (727)
.+++++++.++..++.+..+|+.++..|+.. ...|.-.
T Consensus 98 e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~ 138 (357)
T 3rrk_A 98 EAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAAL 138 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Confidence 3558899999999999999999999998888 6655543
No 266
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=20.08 E-value=1.7e+02 Score=28.81 Aligned_cols=40 Identities=23% Similarity=0.261 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035544 244 HYVEELEDKVRNMHSTIADLNSKISFFMAENASLKQQLSG 283 (727)
Q Consensus 244 qYVeeLE~KVk~LEsENqeLr~qls~LqaEN~~LRqQL~~ 283 (727)
+-|..-|..|+.|+.+|..|+.++.....++..+.+.|.+
T Consensus 128 eli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDq 167 (175)
T 3mud_A 128 ELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQ 167 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888888888888888888888777643
Done!