BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035547
(482 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 116/453 (25%), Positives = 178/453 (39%), Gaps = 79/453 (17%)
Query: 4 FLGTLP-DSIGTLENLTRVDLRSYNFTRPIPTSMANL-AQLFHMDFSSNHFSGPI-PSLH 60
F G LP D++ + L +DL F+ +P S+ NL A L +D SSN+FSGPI P+L
Sbjct: 327 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 386
Query: 61 KXXXXXXXXXXXXXXXEIHLLSNNQFENQFP-EISNMXXXXXXXXXXXXXPWVIPI-LKN 118
+ E++L NN F + P +SN IP L +
Sbjct: 387 QNPKNTLQ--------ELYL-QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 437
Query: 119 QSQLSFFYISNNQISGEIPNWIWEVGGVNLYFXXXXXXXXXXXXEPYHISGRTYS--FST 176
S+L + N + GEIP + V + P +S T S
Sbjct: 438 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI---PSGLSNCTNLNWISL 494
Query: 177 INKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTXXXXXXXXXXXXXXXK 236
N L G IP++I + +L LSNN+ SG+IPA
Sbjct: 495 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA------------------------- 529
Query: 237 SLANCNMLQVLDLRNNHISDNFPCWL--------RNAFSLQVLVFRSNNFSERISCPRNN 288
L +C L LDL N + P + N + + V+ N+ ++ N
Sbjct: 530 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 589
Query: 289 V-------SWPLLKI-----VDLASNKFSGRLSQKWL--LTMMIIQLK-------IPNIF 327
+ S L ++ ++ S + G S + +MM + + IP
Sbjct: 590 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 649
Query: 328 TS------IDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLL 381
S ++ N+ G +P+E+G + L ++S N L G IP + L + +DL
Sbjct: 650 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 709
Query: 382 MNNLMGKIPTSTQLQSFLPTSYEGNKGLYIPPL 414
NNL G IP Q ++F P + N GL PL
Sbjct: 710 NNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 742
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 97/403 (24%), Positives = 158/403 (39%), Gaps = 63/403 (15%)
Query: 17 NLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLHKXXXXXXXXXXXXXXX 76
NL +D+ S NF+ IP + + + L H+D S N SG
Sbjct: 198 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF------------SRAISTCT 244
Query: 77 EIHLL--SNNQFENQFPEISNMXXXXXXXXXXXXXPWVIPILKNQSQLSFFYISNNQISG 134
E+ LL S+NQF P + P+ L + ++ N+ +G
Sbjct: 245 ELKLLNISSNQFVGPIPPL--------------------PL----KSLQYLSLAENKFTG 280
Query: 135 EIPNWIWEVGGVNLYFXXXXXXXXXXXXEP--YHISGRTYSFSTINKSLIGFIP-EYICK 191
EIP+++ G + P + S + + + G +P + + K
Sbjct: 281 EIPDFL--SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 338
Query: 192 ATYFQVLDLSNNNLSGSIPACLITKSSTTXXXXXXXXXXXXXXXKSLAN--CNMLQVLDL 249
+VLDLS N SG +P L S++ +L N LQ L L
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 398
Query: 250 RNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLS 309
+NN + P L N L L N S I P + S L+ + L N G +
Sbjct: 399 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI--PSSLGSLSKLRDLKLWLNMLEGEIP 456
Query: 310 QKWL----LTMMIIQL-----KIPNIFTS------IDCSSNNFEGPMPEEMGRFKSLYAP 354
Q+ + L +I+ +IP+ ++ I S+N G +P+ +GR ++L
Sbjct: 457 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 516
Query: 355 NMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQS 397
+S+N+ G+IP+ G+ + + LDL N G IP + QS
Sbjct: 517 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 559
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 103/476 (21%), Positives = 170/476 (35%), Gaps = 130/476 (27%)
Query: 4 FLGTLPDSI-GTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLHKX 62
F G +PD + G + LT +DL +F +P + + L + SSN+FSG +P
Sbjct: 278 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP----- 332
Query: 63 XXXXXXXXXXXXXXEIHLLSNNQFENQFPEISNMXXXXXXXXXXXXXPWVIPILKNQSQ- 121
++ LS N+F + PE + PIL N Q
Sbjct: 333 ----MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 388
Query: 122 ----LSFFYISNNQISGEIPNWI---WEVGGVNLYFXXXXXXXXXXXXEPYHISGRT-YS 173
L Y+ NN +G+IP + E+ ++L F ++SG S
Sbjct: 389 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN--------------YLSGTIPSS 434
Query: 174 FSTINK---------SLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTXXXX 224
+++K L G IP+ + + L L N+L+G IP+
Sbjct: 435 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS------------- 481
Query: 225 XXXXXXXXXXXKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISC 284
L+NC L + L NN ++ P W+ +L +L +N+FS I
Sbjct: 482 ------------GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI-- 527
Query: 285 PRNNVSWPLLKIVDLASNKF-----------SGRLSQKWLLTMMIIQLKIPNIFTSIDCS 333
P L +DL +N F SG+++ ++ + +K + +
Sbjct: 528 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 587
Query: 334 SN--NFEGPMPEEMGRFKS----------------------------------------- 350
N F+G E++ R +
Sbjct: 588 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 647
Query: 351 -------LYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQSFL 399
L+ N+ HN + GSIP G+L+ + LDL N L G+IP + + L
Sbjct: 648 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 703
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 15/207 (7%)
Query: 191 KATYFQVLDLSNNNLSGSIPACLITKSSTTXXXXXXXXXXXXXXXKSLANCNMLQVLDLR 250
K +VLDLS N++SG+ + ++ C L+ LD+
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVS 205
Query: 251 NNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQ 310
+N+ S P +L + +LQ L N S S R + LK+++++SN+F G +
Sbjct: 206 SNNFSTGIP-FLGDCSALQHLDISGNKLSGDFS--RAISTCTELKLLNISSNQFVGPIPP 262
Query: 311 KWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEM-GRFKSLYAPNMSHNALKGSIPSSF 369
L ++ + L + N F G +P+ + G +L ++S N G++P F
Sbjct: 263 LPLKSLQYLSL-----------AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 311
Query: 370 GNLKQIESLDLLMNNLMGKIPTSTQLQ 396
G+ +ESL L NN G++P T L+
Sbjct: 312 GSCSLLESLALSSNNFSGELPMDTLLK 338
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 86/228 (37%), Gaps = 23/228 (10%)
Query: 1 NTSFLGTLPDSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLH 60
N G +P IG LENL + L + +F+ IP + + L +D ++N F+G IP+
Sbjct: 496 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Query: 61 KXXXXXXXXXXXXXXXEIHLLSNNQFENQFPEISNMXX-----XXXXXXXXXXXPWVI-- 113
++ + N+ + + N+ P I
Sbjct: 556 FKQSGKIAANFIAGKRYVY-IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 614
Query: 114 --------PILKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFXXXXXXXXXXXXEPY 165
P N + F +S N +SG IP E+G + F P
Sbjct: 615 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK---EIGSMPYLFILNLGHNDISGSIPD 671
Query: 166 HISGRTYSFSTINKS---LIGFIPEYICKATYFQVLDLSNNNLSGSIP 210
+ G + ++ S L G IP+ + T +DLSNNNLSG IP
Sbjct: 672 EV-GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 116/453 (25%), Positives = 178/453 (39%), Gaps = 79/453 (17%)
Query: 4 FLGTLP-DSIGTLENLTRVDLRSYNFTRPIPTSMANL-AQLFHMDFSSNHFSGPI-PSLH 60
F G LP D++ + L +DL F+ +P S+ NL A L +D SSN+FSGPI P+L
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389
Query: 61 KXXXXXXXXXXXXXXXEIHLLSNNQFENQFP-EISNMXXXXXXXXXXXXXPWVIPI-LKN 118
+ E++L NN F + P +SN IP L +
Sbjct: 390 QNPKNTLQ--------ELYL-QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440
Query: 119 QSQLSFFYISNNQISGEIPNWIWEVGGVNLYFXXXXXXXXXXXXEPYHISGRTYS--FST 176
S+L + N + GEIP + V + P +S T S
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI---PSGLSNCTNLNWISL 497
Query: 177 INKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTXXXXXXXXXXXXXXXK 236
N L G IP++I + +L LSNN+ SG+IPA
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA------------------------- 532
Query: 237 SLANCNMLQVLDLRNNHISDNFPCWL--------RNAFSLQVLVFRSNNFSERISCPRNN 288
L +C L LDL N + P + N + + V+ N+ ++ N
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592
Query: 289 V-------SWPLLKI-----VDLASNKFSGRLSQKWL--LTMMIIQLK-------IPNIF 327
+ S L ++ ++ S + G S + +MM + + IP
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652
Query: 328 TS------IDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLL 381
S ++ N+ G +P+E+G + L ++S N L G IP + L + +DL
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712
Query: 382 MNNLMGKIPTSTQLQSFLPTSYEGNKGLYIPPL 414
NNL G IP Q ++F P + N GL PL
Sbjct: 713 NNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 745
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 97/403 (24%), Positives = 158/403 (39%), Gaps = 63/403 (15%)
Query: 17 NLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLHKXXXXXXXXXXXXXXX 76
NL +D+ S NF+ IP + + + L H+D S N SG
Sbjct: 201 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF------------SRAISTCT 247
Query: 77 EIHLL--SNNQFENQFPEISNMXXXXXXXXXXXXXPWVIPILKNQSQLSFFYISNNQISG 134
E+ LL S+NQF P + P+ L + ++ N+ +G
Sbjct: 248 ELKLLNISSNQFVGPIPPL--------------------PL----KSLQYLSLAENKFTG 283
Query: 135 EIPNWIWEVGGVNLYFXXXXXXXXXXXXEP--YHISGRTYSFSTINKSLIGFIP-EYICK 191
EIP+++ G + P + S + + + G +P + + K
Sbjct: 284 EIPDFL--SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341
Query: 192 ATYFQVLDLSNNNLSGSIPACLITKSSTTXXXXXXXXXXXXXXXKSLAN--CNMLQVLDL 249
+VLDLS N SG +P L S++ +L N LQ L L
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401
Query: 250 RNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLS 309
+NN + P L N L L N S I P + S L+ + L N G +
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI--PSSLGSLSKLRDLKLWLNMLEGEIP 459
Query: 310 QKWL----LTMMIIQL-----KIPNIFTS------IDCSSNNFEGPMPEEMGRFKSLYAP 354
Q+ + L +I+ +IP+ ++ I S+N G +P+ +GR ++L
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
Query: 355 NMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQS 397
+S+N+ G+IP+ G+ + + LDL N G IP + QS
Sbjct: 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 103/476 (21%), Positives = 170/476 (35%), Gaps = 130/476 (27%)
Query: 4 FLGTLPDSI-GTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLHKX 62
F G +PD + G + LT +DL +F +P + + L + SSN+FSG +P
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP----- 335
Query: 63 XXXXXXXXXXXXXXEIHLLSNNQFENQFPEISNMXXXXXXXXXXXXXPWVIPILKNQSQ- 121
++ LS N+F + PE + PIL N Q
Sbjct: 336 ----MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391
Query: 122 ----LSFFYISNNQISGEIPNWI---WEVGGVNLYFXXXXXXXXXXXXEPYHISGRT-YS 173
L Y+ NN +G+IP + E+ ++L F ++SG S
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN--------------YLSGTIPSS 437
Query: 174 FSTINK---------SLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTXXXX 224
+++K L G IP+ + + L L N+L+G IP+
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS------------- 484
Query: 225 XXXXXXXXXXXKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISC 284
L+NC L + L NN ++ P W+ +L +L +N+FS I
Sbjct: 485 ------------GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI-- 530
Query: 285 PRNNVSWPLLKIVDLASNKF-----------SGRLSQKWLLTMMIIQLKIPNIFTSIDCS 333
P L +DL +N F SG+++ ++ + +K + +
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 590
Query: 334 SN--NFEGPMPEEMGRFKS----------------------------------------- 350
N F+G E++ R +
Sbjct: 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650
Query: 351 -------LYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQSFL 399
L+ N+ HN + GSIP G+L+ + LDL N L G+IP + + L
Sbjct: 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 15/207 (7%)
Query: 191 KATYFQVLDLSNNNLSGSIPACLITKSSTTXXXXXXXXXXXXXXXKSLANCNMLQVLDLR 250
K +VLDLS N++SG+ + ++ C L+ LD+
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVS 208
Query: 251 NNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQ 310
+N+ S P +L + +LQ L N S S R + LK+++++SN+F G +
Sbjct: 209 SNNFSTGIP-FLGDCSALQHLDISGNKLSGDFS--RAISTCTELKLLNISSNQFVGPIPP 265
Query: 311 KWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEM-GRFKSLYAPNMSHNALKGSIPSSF 369
L ++ + L + N F G +P+ + G +L ++S N G++P F
Sbjct: 266 LPLKSLQYLSL-----------AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314
Query: 370 GNLKQIESLDLLMNNLMGKIPTSTQLQ 396
G+ +ESL L NN G++P T L+
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLK 341
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 86/228 (37%), Gaps = 23/228 (10%)
Query: 1 NTSFLGTLPDSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLH 60
N G +P IG LENL + L + +F+ IP + + L +D ++N F+G IP+
Sbjct: 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Query: 61 KXXXXXXXXXXXXXXXEIHLLSNNQFENQFPEISNMXX-----XXXXXXXXXXXPWVI-- 113
++ + N+ + + N+ P I
Sbjct: 559 FKQSGKIAANFIAGKRYVY-IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617
Query: 114 --------PILKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFXXXXXXXXXXXXEPY 165
P N + F +S N +SG IP E+G + F P
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK---EIGSMPYLFILNLGHNDISGSIPD 674
Query: 166 HISGRTYSFSTINKS---LIGFIPEYICKATYFQVLDLSNNNLSGSIP 210
+ G + ++ S L G IP+ + T +DLSNNNLSG IP
Sbjct: 675 EV-GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 103/248 (41%), Gaps = 41/248 (16%)
Query: 181 LIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTXXXXXXXXXXXXXXXKSLAN 240
L+G IP I K T L +++ N+SG+IP L+
Sbjct: 89 LVGPIPPAIAKLTQLHYLYITHTNVSGAIP-------------------------DFLSQ 123
Query: 241 CNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLA 300
L LD N +S P + + +L + F N S I + S L + ++
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK-LFTSMTIS 182
Query: 301 SNKFSGRLSQKWL--------LTMMIIQLKIPNIFTS------IDCSSNNFEGPMPEEMG 346
N+ +G++ + L+ +++ +F S I + N+ + ++G
Sbjct: 183 RNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVG 241
Query: 347 RFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQSFLPTSYEGN 406
K+L ++ +N + G++P LK + SL++ NNL G+IP LQ F ++Y N
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301
Query: 407 KGLYIPPL 414
K L PL
Sbjct: 302 KCLCGSPL 309
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 77/383 (20%), Positives = 140/383 (36%), Gaps = 130/383 (33%)
Query: 1 NTSFLGTLPDSIGTLENLTRVDLRSYNFTR--PIPTSMANLAQLFHMDFSS-NHFSGPIP 57
N ++LG L D+ + +DL N + PIP+S+ANL L + N+ GPIP
Sbjct: 35 NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94
Query: 58 SLHKXXXXXXXXXXXXXXXEIHLLSNNQFENQFPEISNMXXXXXXXXXXXXXPWVIPILK 117
P I+ +
Sbjct: 95 ---------------------------------PAIAKL--------------------- 100
Query: 118 NQSQLSFFYISNNQISGEIPNWIWEVG---GVNLYFXXXXXXXXXXXXEPYHISGRTYSF 174
+QL + YI++ +SG IP+++ ++ ++ + ++ G T+
Sbjct: 101 --TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158
Query: 175 STINKSLIGFIPE-YICKATYFQVLDLSNNNLSGSIPACLITKSSTTXXXXXXXXXXXXX 233
+ I+ G IP+ Y + F + +S N L+G IP
Sbjct: 159 NRIS----GAIPDSYGSFSKLFTSMTISRNRLTGKIPP---------------------- 192
Query: 234 XXKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPL 293
+ AN N L +DL N + + ++F S+ +++I +N++++ L
Sbjct: 193 ---TFANLN-LAFVDLSRNMLEGD-----------ASVLFGSDKNTQKIHLAKNSLAFDL 237
Query: 294 LKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYA 353
K V L+ N +D +N G +P+ + + K L++
Sbjct: 238 GK-VGLSKN------------------------LNGLDLRNNRIYGTLPQGLTQLKFLHS 272
Query: 354 PNMSHNALKGSIPSSFGNLKQIE 376
N+S N L G IP GNL++ +
Sbjct: 273 LNVSFNNLCGEIPQG-GNLQRFD 294
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 13/151 (8%)
Query: 244 LQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNK 303
+Q LDL H+ + P + SL+ LV +N+F + C N S+P L+ + + N
Sbjct: 279 VQELDLTAAHL-NGLPSGIEGMNSLKKLVLNANSFDQL--CQINAASFPSLRDLYIKGNM 335
Query: 304 FSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGP--MPEEMGRFKSLYAPNMSHNAL 361
L + L + +Q +D S ++ E ++ + L N+S+N
Sbjct: 336 RKLDLGTRCLEKLENLQ--------KLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEP 387
Query: 362 KGSIPSSFGNLKQIESLDLLMNNLMGKIPTS 392
G +F Q+E LD+ +L K P S
Sbjct: 388 LGLEDQAFKECPQLELLDVAFTHLHVKAPHS 418
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 13/151 (8%)
Query: 244 LQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNK 303
LQ LDL H+ P ++ L+ LV N+F + C + ++P L + + N
Sbjct: 277 LQELDLTATHLK-GLPSGMKGLNLLKKLVLSVNHFDQL--CQISAANFPSLTHLYIRGN- 332
Query: 304 FSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGP--MPEEMGRFKSLYAPNMSHNAL 361
+K L + ++ K+ N+ T +D S N+ E ++ L N+SHN
Sbjct: 333 -----VKKLHLGVGCLE-KLGNLQT-LDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEP 385
Query: 362 KGSIPSSFGNLKQIESLDLLMNNLMGKIPTS 392
G +F Q+E LDL L P S
Sbjct: 386 LGLQSQAFKECPQLELLDLAFTRLHINAPQS 416
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 345 MGRFKSLYAPNMSHNALKG-SIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQSFLP 400
+G K+L N++HN ++ +P F NL +E LDL N + T ++ +P
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 200
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 345 MGRFKSLYAPNMSHNALKG-SIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQSFLP 400
+G K+L N++HN ++ +P F NL +E LDL N + T ++ +P
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 345 MGRFKSLYAPNMSHNALKG-SIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQSFLP 400
+G K+L N++HN ++ +P F NL +E LDL N + T ++ +P
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 345 MGRFKSLYAPNMSHNALKG-SIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQSFLP 400
+G K+L N++HN ++ +P F NL +E LDL N + T ++ +P
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 178
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 345 MGRFKSLYAPNMSHNALKG-SIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQSFLP 400
+G K+L N++HN ++ +P F NL +E LDL N + T ++ +P
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 345 MGRFKSLYAPNMSHNALKG-SIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQSFLP 400
+G K+L N++HN ++ +P F NL +E LDL N + T ++ +P
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 177
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 345 MGRFKSLYAPNMSHNALKG-SIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQSFLP 400
+G K+L N++HN ++ +P F NL +E LDL N + T ++ +P
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 177
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 345 MGRFKSLYAPNMSHNALKG-SIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQSFLP 400
+G K+L N++HN ++ +P F NL +E LDL N + T ++ +P
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,765,280
Number of Sequences: 62578
Number of extensions: 404038
Number of successful extensions: 939
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 721
Number of HSP's gapped (non-prelim): 141
length of query: 482
length of database: 14,973,337
effective HSP length: 103
effective length of query: 379
effective length of database: 8,527,803
effective search space: 3232037337
effective search space used: 3232037337
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)