Query 035547
Match_columns 482
No_of_seqs 295 out of 4043
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 03:55:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035547.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035547hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 6.8E-48 1.5E-52 424.1 32.8 397 1-413 173-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 6.3E-46 1.4E-50 408.5 29.9 405 2-413 150-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 8.7E-43 1.9E-47 330.9 1.9 367 17-400 79-462 (873)
4 KOG4194 Membrane glycoprotein 100.0 6E-42 1.3E-46 325.2 4.2 377 19-413 55-456 (873)
5 KOG0444 Cytoskeletal regulator 100.0 8.2E-38 1.8E-42 299.3 -3.1 373 12-417 3-383 (1255)
6 KOG0444 Cytoskeletal regulator 100.0 5.4E-36 1.2E-40 286.8 -4.2 360 1-391 16-380 (1255)
7 KOG0472 Leucine-rich repeat pr 100.0 7.1E-36 1.5E-40 272.4 -12.0 193 7-205 82-309 (565)
8 KOG0472 Leucine-rich repeat pr 100.0 1E-34 2.3E-39 264.8 -5.3 346 7-386 151-541 (565)
9 KOG0618 Serine/threonine phosp 100.0 2.7E-31 5.8E-36 265.5 0.7 379 2-409 54-489 (1081)
10 KOG0618 Serine/threonine phosp 99.9 1.9E-28 4.1E-33 245.3 -0.9 352 18-406 47-462 (1081)
11 PLN03210 Resistant to P. syrin 99.9 4.9E-24 1.1E-28 235.8 26.9 335 10-384 552-904 (1153)
12 PRK15387 E3 ubiquitin-protein 99.9 4.5E-24 9.7E-29 220.2 18.1 261 41-390 202-462 (788)
13 PRK15387 E3 ubiquitin-protein 99.9 5.2E-24 1.1E-28 219.7 17.2 265 16-369 201-465 (788)
14 KOG4237 Extracellular matrix p 99.9 3.8E-27 8.2E-32 215.2 -5.3 347 17-383 68-498 (498)
15 PLN03210 Resistant to P. syrin 99.9 4.8E-23 1E-27 227.9 24.1 336 32-406 550-903 (1153)
16 KOG4237 Extracellular matrix p 99.9 1.8E-24 3.8E-29 197.9 -0.0 276 98-388 67-361 (498)
17 PRK15370 E3 ubiquitin-protein 99.9 4.6E-22 1E-26 206.6 11.4 223 16-279 178-401 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 6.6E-21 1.4E-25 198.0 13.9 246 98-386 178-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 2E-19 4.3E-24 173.4 6.5 210 170-384 82-318 (319)
20 cd00116 LRR_RI Leucine-rich re 99.8 4.2E-19 9.2E-24 171.1 7.2 263 102-388 2-293 (319)
21 KOG0617 Ras suppressor protein 99.7 2.8E-19 6.1E-24 145.9 -4.9 187 112-305 25-212 (264)
22 KOG0617 Ras suppressor protein 99.7 8.1E-19 1.7E-23 143.2 -2.4 163 38-241 31-195 (264)
23 PLN03150 hypothetical protein; 99.5 3.6E-14 7.8E-19 147.3 12.7 118 293-419 419-538 (623)
24 KOG1909 Ran GTPase-activating 99.5 1E-14 2.2E-19 132.5 2.5 139 242-385 157-310 (382)
25 KOG1909 Ran GTPase-activating 99.4 1.1E-13 2.5E-18 125.8 3.3 138 220-361 158-310 (382)
26 KOG0532 Leucine-rich repeat (L 99.4 2.1E-14 4.5E-19 138.2 -1.9 196 45-262 55-253 (722)
27 COG4886 Leucine-rich repeat (L 99.4 1.3E-12 2.9E-17 129.6 8.7 180 98-312 116-297 (394)
28 COG4886 Leucine-rich repeat (L 99.3 3.5E-12 7.5E-17 126.6 8.7 196 43-282 96-293 (394)
29 KOG0532 Leucine-rich repeat (L 99.3 1.8E-13 3.8E-18 131.9 -2.5 195 119-360 74-271 (722)
30 KOG1259 Nischarin, modulator o 99.3 9.2E-13 2E-17 117.4 2.0 179 98-309 237-416 (490)
31 KOG1259 Nischarin, modulator o 99.3 9.3E-13 2E-17 117.4 1.4 127 98-256 284-413 (490)
32 KOG3207 Beta-tubulin folding c 99.3 1.5E-12 3.2E-17 121.9 1.5 218 116-362 117-339 (505)
33 KOG0531 Protein phosphatase 1, 99.2 9.6E-13 2.1E-17 130.9 -0.1 247 15-306 71-319 (414)
34 PLN03150 hypothetical protein; 99.2 2.5E-11 5.5E-16 126.2 10.4 113 267-390 419-532 (623)
35 PF14580 LRR_9: Leucine-rich r 99.2 1.3E-11 2.8E-16 105.5 6.3 112 190-307 16-128 (175)
36 PF14580 LRR_9: Leucine-rich r 99.2 1.5E-11 3.2E-16 105.2 6.2 135 108-274 7-148 (175)
37 KOG3207 Beta-tubulin folding c 99.2 3.7E-12 8E-17 119.3 2.4 203 98-305 121-339 (505)
38 KOG0531 Protein phosphatase 1, 99.0 3.4E-11 7.4E-16 119.8 -0.6 60 98-161 95-155 (414)
39 PF13855 LRR_8: Leucine rich r 99.0 4E-10 8.6E-15 79.3 3.0 61 325-385 1-61 (61)
40 PF13855 LRR_8: Leucine rich r 98.9 5.3E-10 1.1E-14 78.6 2.6 60 16-75 1-61 (61)
41 KOG1859 Leucine-rich repeat pr 98.8 1.1E-10 2.4E-15 115.9 -6.0 128 194-338 165-292 (1096)
42 KOG1859 Leucine-rich repeat pr 98.7 3.6E-10 7.8E-15 112.3 -5.1 127 121-279 165-292 (1096)
43 KOG4658 Apoptotic ATPase [Sign 98.7 1.5E-08 3.4E-13 108.0 5.7 203 16-257 523-732 (889)
44 KOG4658 Apoptotic ATPase [Sign 98.7 3E-08 6.5E-13 105.8 6.4 129 60-203 520-652 (889)
45 COG5238 RNA1 Ran GTPase-activa 98.6 1.8E-08 3.9E-13 89.2 3.1 195 187-386 86-316 (388)
46 COG5238 RNA1 Ran GTPase-activa 98.6 2.6E-09 5.6E-14 94.4 -2.7 206 114-362 86-316 (388)
47 KOG2982 Uncharacterized conser 98.6 1.5E-08 3.3E-13 90.8 1.0 186 186-381 90-287 (418)
48 KOG2120 SCF ubiquitin ligase, 98.5 6.1E-09 1.3E-13 93.3 -4.2 179 98-302 185-373 (419)
49 KOG4579 Leucine-rich repeat (L 98.3 4.9E-08 1.1E-12 77.6 -2.0 48 186-236 93-140 (177)
50 KOG2982 Uncharacterized conser 98.3 2.2E-07 4.8E-12 83.5 1.4 59 98-158 71-133 (418)
51 KOG2120 SCF ubiquitin ligase, 98.3 1.7E-07 3.8E-12 84.2 -0.2 179 194-383 186-373 (419)
52 KOG4579 Leucine-rich repeat (L 98.2 6E-08 1.3E-12 77.1 -3.3 86 290-386 51-136 (177)
53 KOG1644 U2-associated snRNP A' 98.2 2.6E-06 5.5E-11 72.6 5.2 101 17-129 43-149 (233)
54 KOG1644 U2-associated snRNP A' 98.2 3.6E-06 7.7E-11 71.8 5.6 104 98-203 42-150 (233)
55 PF12799 LRR_4: Leucine Rich r 98.1 2E-06 4.2E-11 55.4 2.7 38 16-54 1-38 (44)
56 PF12799 LRR_4: Leucine Rich r 98.1 5E-06 1.1E-10 53.5 3.7 37 220-256 2-38 (44)
57 PRK15386 type III secretion pr 98.0 2.4E-05 5.2E-10 75.5 7.8 17 62-78 51-67 (426)
58 PRK15386 type III secretion pr 97.9 6.7E-05 1.4E-09 72.5 9.4 32 169-203 156-187 (426)
59 KOG3665 ZYG-1-like serine/thre 97.8 2E-05 4.2E-10 82.5 4.7 145 193-344 122-269 (699)
60 KOG2739 Leucine-rich acidic nu 97.7 2.2E-05 4.8E-10 69.9 2.2 71 6-78 33-106 (260)
61 KOG3665 ZYG-1-like serine/thre 97.5 2.9E-05 6.3E-10 81.2 0.1 110 97-210 147-267 (699)
62 KOG2739 Leucine-rich acidic nu 97.3 0.00018 3.8E-09 64.3 3.6 85 220-306 44-130 (260)
63 PF13306 LRR_5: Leucine rich r 97.2 0.00079 1.7E-08 55.1 5.5 60 237-300 7-66 (129)
64 PF13306 LRR_5: Leucine rich r 97.2 0.0013 2.8E-08 53.8 6.7 63 11-76 7-70 (129)
65 KOG2123 Uncharacterized conser 97.1 3.4E-05 7.4E-10 69.1 -3.1 85 221-309 21-105 (388)
66 KOG4341 F-box protein containi 97.1 2.3E-05 4.9E-10 74.1 -5.2 279 16-336 138-437 (483)
67 KOG2123 Uncharacterized conser 97.0 0.0001 2.2E-09 66.1 -1.2 96 148-272 21-123 (388)
68 KOG4341 F-box protein containi 97.0 6.8E-05 1.5E-09 71.0 -2.9 276 98-384 138-437 (483)
69 KOG4308 LRR-containing protein 95.9 0.00017 3.7E-09 72.3 -7.5 94 185-279 107-217 (478)
70 PF00560 LRR_1: Leucine Rich R 95.4 0.0059 1.3E-07 32.5 0.6 19 351-370 2-20 (22)
71 PF00560 LRR_1: Leucine Rich R 95.3 0.0061 1.3E-07 32.5 0.6 21 17-38 1-21 (22)
72 KOG4308 LRR-containing protein 94.9 0.00034 7.4E-09 70.1 -9.4 185 121-305 88-303 (478)
73 PF13504 LRR_7: Leucine rich r 93.0 0.062 1.4E-06 26.5 1.3 11 221-231 3-13 (17)
74 KOG1947 Leucine rich repeat pr 91.1 0.057 1.2E-06 55.0 -0.4 112 192-304 187-307 (482)
75 smart00370 LRR Leucine-rich re 90.3 0.29 6.2E-06 27.1 2.2 16 16-31 2-17 (26)
76 smart00369 LRR_TYP Leucine-ric 90.3 0.29 6.2E-06 27.1 2.2 16 16-31 2-17 (26)
77 smart00370 LRR Leucine-rich re 90.2 0.28 6.1E-06 27.1 2.1 18 242-259 2-19 (26)
78 smart00369 LRR_TYP Leucine-ric 90.2 0.28 6.1E-06 27.1 2.1 18 242-259 2-19 (26)
79 smart00365 LRR_SD22 Leucine-ri 90.0 0.32 6.9E-06 27.0 2.2 17 63-79 2-18 (26)
80 KOG0473 Leucine-rich repeat pr 89.9 0.012 2.7E-07 51.7 -5.3 59 325-385 65-123 (326)
81 PF08693 SKG6: Transmembrane a 88.0 0.53 1.2E-05 29.0 2.3 24 441-464 14-37 (40)
82 PF13516 LRR_6: Leucine Rich r 87.6 0.24 5.1E-06 26.8 0.6 13 326-338 3-15 (24)
83 KOG3864 Uncharacterized conser 87.4 0.1 2.2E-06 45.2 -1.4 60 243-302 102-161 (221)
84 PF07204 Orthoreo_P10: Orthore 86.7 0.48 1E-05 35.0 1.9 34 438-471 41-74 (98)
85 KOG1947 Leucine rich repeat pr 85.9 0.34 7.4E-06 49.3 1.2 157 219-384 188-373 (482)
86 KOG0473 Leucine-rich repeat pr 84.9 0.037 7.9E-07 48.9 -5.3 57 220-277 66-122 (326)
87 PF04478 Mid2: Mid2 like cell 82.6 0.81 1.8E-05 37.6 1.8 23 439-461 49-71 (154)
88 PTZ00382 Variant-specific surf 80.9 1.8 3.9E-05 33.1 3.0 27 440-466 67-93 (96)
89 PF01102 Glycophorin_A: Glycop 80.7 0.7 1.5E-05 36.8 0.8 26 440-465 65-90 (122)
90 PF08374 Protocadherin: Protoc 78.8 1.9 4E-05 37.6 2.8 26 437-462 36-61 (221)
91 KOG3763 mRNA export factor TAP 78.1 1.5 3.3E-05 44.0 2.3 42 190-231 241-282 (585)
92 smart00364 LRR_BAC Leucine-ric 77.8 1.4 3.1E-05 24.4 1.2 16 350-366 3-18 (26)
93 KOG4242 Predicted myosin-I-bin 76.8 14 0.00031 36.6 8.3 15 243-257 355-369 (553)
94 PF02009 Rifin_STEVOR: Rifin/s 75.4 3.1 6.7E-05 39.0 3.5 26 454-479 268-294 (299)
95 TIGR00864 PCC polycystin catio 73.8 1.8 3.9E-05 51.9 1.8 33 355-387 1-33 (2740)
96 PF02439 Adeno_E3_CR2: Adenovi 72.8 1.3 2.9E-05 26.8 0.2 8 444-451 8-15 (38)
97 smart00368 LRR_RI Leucine rich 72.0 3.4 7.3E-05 23.3 1.8 14 63-76 2-15 (28)
98 KOG3864 Uncharacterized conser 71.9 2 4.4E-05 37.4 1.3 35 170-204 102-136 (221)
99 KOG3763 mRNA export factor TAP 70.8 2.4 5.2E-05 42.6 1.7 63 98-160 218-284 (585)
100 PF14991 MLANA: Protein melan- 61.7 2.4 5.2E-05 32.7 -0.2 25 453-477 37-61 (118)
101 PF01034 Syndecan: Syndecan do 60.6 2.8 6E-05 28.8 -0.0 11 454-464 27-37 (64)
102 PF12191 stn_TNFRSF12A: Tumour 60.1 5.1 0.00011 31.7 1.3 29 439-467 79-107 (129)
103 PF12606 RELT: Tumour necrosis 58.7 4.6 0.0001 26.4 0.7 33 443-475 3-35 (50)
104 PF06697 DUF1191: Protein of u 58.7 36 0.00079 31.5 6.7 7 437-443 211-217 (278)
105 KOG4242 Predicted myosin-I-bin 58.4 46 0.001 33.3 7.6 60 17-76 215-281 (553)
106 PF15102 TMEM154: TMEM154 prot 56.7 8.9 0.00019 31.5 2.2 29 438-466 58-86 (146)
107 PF00558 Vpu: Vpu protein; In 51.2 9.2 0.0002 27.9 1.3 12 467-478 33-44 (81)
108 PF04995 CcmD: Heme exporter p 51.0 41 0.00088 21.6 4.2 31 447-477 10-40 (46)
109 PF15050 SCIMP: SCIMP protein 50.0 9.2 0.0002 29.9 1.2 16 449-464 16-31 (133)
110 PF01299 Lamp: Lysosome-associ 49.4 4.4 9.5E-05 38.6 -0.7 14 444-457 275-288 (306)
111 PF08374 Protocadherin: Protoc 49.1 10 0.00023 33.2 1.6 28 439-466 34-61 (221)
112 PF03302 VSP: Giardia variant- 48.3 12 0.00026 37.0 2.2 28 439-466 367-394 (397)
113 PF02009 Rifin_STEVOR: Rifin/s 48.3 13 0.00028 34.9 2.3 22 443-464 262-283 (299)
114 PF14575 EphA2_TM: Ephrin type 46.3 9.8 0.00021 27.5 0.9 7 459-465 20-26 (75)
115 PF11044 TMEMspv1-c74-12: Plec 45.9 22 0.00047 22.3 2.2 29 443-471 8-36 (49)
116 PF14316 DUF4381: Domain of un 44.8 30 0.00065 28.7 3.7 16 462-477 43-58 (146)
117 PHA03265 envelope glycoprotein 44.5 23 0.0005 33.5 3.1 28 439-466 347-374 (402)
118 PF04971 Lysis_S: Lysis protei 42.9 19 0.0004 25.2 1.7 27 438-464 32-58 (68)
119 PF15050 SCIMP: SCIMP protein 42.8 6 0.00013 30.9 -0.7 28 439-466 9-36 (133)
120 PRK00523 hypothetical protein; 42.1 20 0.00043 25.4 1.8 24 446-469 10-33 (72)
121 PF05393 Hum_adeno_E3A: Human 42.1 21 0.00045 26.3 2.0 14 449-462 43-56 (94)
122 PF01102 Glycophorin_A: Glycop 40.8 14 0.0003 29.6 1.0 17 450-466 78-94 (122)
123 PF05454 DAG1: Dystroglycan (D 40.8 9.1 0.0002 35.7 0.0 30 440-469 149-178 (290)
124 PF11980 DUF3481: Domain of un 40.4 31 0.00067 25.2 2.6 28 438-465 15-43 (87)
125 PF15176 LRR19-TM: Leucine-ric 39.8 42 0.00091 25.5 3.3 12 436-447 14-25 (102)
126 TIGR03141 cytochro_ccmD heme e 39.0 61 0.0013 20.7 3.6 28 448-475 12-39 (45)
127 PF06365 CD34_antigen: CD34/Po 39.0 42 0.00091 29.5 3.8 19 450-468 112-130 (202)
128 smart00367 LRR_CC Leucine-rich 38.7 24 0.00051 19.2 1.5 11 40-50 2-12 (26)
129 PF12877 DUF3827: Domain of un 37.8 37 0.00079 35.2 3.6 20 436-455 267-286 (684)
130 PF05624 LSR: Lipolysis stimul 36.7 56 0.0012 20.8 3.0 21 439-459 2-22 (49)
131 PF13703 PepSY_TM_2: PepSY-ass 35.2 11 0.00023 28.3 -0.4 22 443-464 20-41 (88)
132 PF15069 FAM163: FAM163 family 34.0 56 0.0012 26.7 3.5 24 440-463 6-29 (143)
133 PRK01844 hypothetical protein; 33.8 38 0.00081 24.1 2.1 16 450-465 13-28 (72)
134 PF06809 NPDC1: Neural prolife 33.3 58 0.0013 30.5 3.9 25 440-464 199-223 (341)
135 TIGR00864 PCC polycystin catio 32.5 28 0.00061 42.5 2.2 32 298-338 1-32 (2740)
136 PTZ00046 rifin; Provisional 31.4 39 0.00084 32.5 2.5 26 441-466 319-344 (358)
137 PF15176 LRR19-TM: Leucine-ric 30.9 68 0.0015 24.4 3.2 37 436-472 11-47 (102)
138 TIGR01477 RIFIN variant surfac 30.7 41 0.00088 32.3 2.5 24 443-466 316-339 (353)
139 PHA03099 epidermal growth fact 29.7 24 0.00051 28.1 0.7 24 443-466 104-127 (139)
140 PF12259 DUF3609: Protein of u 29.4 57 0.0012 31.8 3.4 24 444-467 302-325 (361)
141 PF14610 DUF4448: Protein of u 29.0 35 0.00075 29.8 1.7 24 439-462 157-180 (189)
142 PF03229 Alpha_GJ: Alphavirus 28.2 1.8E+02 0.0039 22.8 5.1 24 441-464 85-109 (126)
143 PF05568 ASFV_J13L: African sw 27.7 61 0.0013 26.3 2.7 20 446-465 36-55 (189)
144 PF10661 EssA: WXG100 protein 26.6 57 0.0012 27.1 2.5 22 447-468 123-144 (145)
145 PF15345 TMEM51: Transmembrane 26.6 2.3E+02 0.0049 25.5 6.2 27 442-468 59-85 (233)
146 PF05337 CSF-1: Macrophage col 24.9 24 0.00052 32.3 0.0 26 442-467 228-253 (285)
147 PF10808 DUF2542: Protein of u 24.3 89 0.0019 22.3 2.6 31 451-481 10-40 (79)
148 PF12301 CD99L2: CD99 antigen 24.3 37 0.00081 28.9 1.0 26 445-470 120-145 (169)
149 PF05808 Podoplanin: Podoplani 24.0 26 0.00056 29.3 0.0 31 439-469 129-160 (162)
150 TIGR01478 STEVOR variant surfa 20.1 78 0.0017 29.3 2.2 16 459-474 275-290 (295)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.8e-48 Score=424.06 Aligned_cols=397 Identities=24% Similarity=0.355 Sum_probs=285.5
Q ss_pred CCcceecCCcCCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCc---
Q 035547 1 NTSFLGTLPDSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLN--- 76 (482)
Q Consensus 1 ~n~~~g~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~--- 76 (482)
+|.+.+.+|++|+.+++|++|++++|.+++..|..++++++|++|++++|.+.+..|.. ..+++|++|++++|.++
T Consensus 173 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 252 (968)
T PLN00113 173 GNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI 252 (968)
T ss_pred cCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecccc
Confidence 46677788888888888888888888887777878888888888888888877666655 77788888888877654
Q ss_pred -----------ccccCCCCcccccCCCCCcCCccccEEEccCCCCC-CCCC-CCCCCCCCEEEcccCcccccCChhhhhc
Q 035547 77 -----------EIHLLSNNQFENQFPEISNMSSSFSKLRLASSKPW-VIPI-LKNQSQLSFFYISNNQISGEIPNWIWEV 143 (482)
Q Consensus 77 -----------~l~~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~-~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 143 (482)
.+ +++.|.+.+.+|..+...++|+.|++++|.+. .+|. +.++++|+.|++++|.+.+..|..+..+
T Consensus 253 p~~l~~l~~L~~L-~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 331 (968)
T PLN00113 253 PSSLGNLKNLQYL-FLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL 331 (968)
T ss_pred ChhHhCCCCCCEE-ECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC
Confidence 22 56667777766666555577777777777766 5555 6777777777777777777777777776
Q ss_pred CCCCccEEeCCCCcccCCC-CCCCCCCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccc
Q 035547 144 GGVNLYFLNLSQNLLVSLQ-EPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLG 222 (482)
Q Consensus 144 ~~~~L~~L~L~~n~i~~~~-~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~ 222 (482)
+. |+.|++++|.++... ..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+.... +|+
T Consensus 332 ~~--L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~--~L~ 407 (968)
T PLN00113 332 PR--LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACR--SLR 407 (968)
T ss_pred CC--CCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCC--CCC
Confidence 66 777777777766432 2233566666777776666666666666666666666666666655665555444 566
Q ss_pred eEEccCCCCC-chhhhcccCCCCCEEeCCCcccCCCcChhhhcCC-----------------------CCcEEEcccCcc
Q 035547 223 VLNLRRNNLG-VVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAF-----------------------SLQVLVFRSNNF 278 (482)
Q Consensus 223 ~L~l~~n~l~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----------------------~L~~L~L~~N~i 278 (482)
.|++++|.++ .+|..+..+++|+.|++++|.+++..+..+..++ +|+.|++++|++
T Consensus 408 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l 487 (968)
T PLN00113 408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQF 487 (968)
T ss_pred EEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCcc
Confidence 6666666553 3444555555555555555555554444444444 455555555555
Q ss_pred ccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccC
Q 035547 279 SERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSH 358 (482)
Q Consensus 279 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 358 (482)
.+.. +..+..+++|+.|+|++|.+.+.+|..+ ..+++|++|++++|.+++.+|..+..+++|+.|+|++
T Consensus 488 ~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~~---------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 556 (968)
T PLN00113 488 SGAV--PRKLGSLSELMQLKLSENKLSGEIPDEL---------SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQ 556 (968)
T ss_pred CCcc--ChhhhhhhccCEEECcCCcceeeCChHH---------cCccCCCEEECCCCcccccCChhHhCcccCCEEECCC
Confidence 5444 3455666777777777777777776544 5788999999999999999999999999999999999
Q ss_pred CcCcccccccccCCCCCCEEeCCCCCccccCCCCcccCcCCCCcccCCCCCCCCC
Q 035547 359 NALKGSIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQSFLPTSYEGNKGLYIPP 413 (482)
Q Consensus 359 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~~~~~ 413 (482)
|++++.+|..+..+++|+.+++++|++.+.+|...++..+....+.||+.+|+.+
T Consensus 557 N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 557 NQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 9999999999999999999999999999999998888888889999999999754
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.3e-46 Score=408.49 Aligned_cols=405 Identities=29% Similarity=0.413 Sum_probs=240.4
Q ss_pred CcceecCCcCCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCc----
Q 035547 2 TSFLGTLPDSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLN---- 76 (482)
Q Consensus 2 n~~~g~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~---- 76 (482)
|.+.|.+|..++.+++|++|++++|.+.+..|.+++++++|++|++++|.+.+..|.. ..+++|++|+|++|+++
T Consensus 150 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 229 (968)
T PLN00113 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP 229 (968)
T ss_pred CcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC
Confidence 3444455555555555555555555555445555555555555555555554444433 44555555555555443
Q ss_pred ----------ccccCCCCcccccCCCCCcCCccccEEEccCCCCC-CCCC-CCCCCCCCEEEcccCcccccCChhhhhcC
Q 035547 77 ----------EIHLLSNNQFENQFPEISNMSSSFSKLRLASSKPW-VIPI-LKNQSQLSFFYISNNQISGEIPNWIWEVG 144 (482)
Q Consensus 77 ----------~l~~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~-~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 144 (482)
.+ ++++|.+.+.+|..+..+++|+.|++++|.+. .+|. +.++++|++|++++|.+.+.+|..+..+.
T Consensus 230 ~~l~~l~~L~~L-~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 308 (968)
T PLN00113 230 YEIGGLTSLNHL-DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308 (968)
T ss_pred hhHhcCCCCCEE-ECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC
Confidence 11 33444444444444333344444444444443 3333 44444455555555554444444444444
Q ss_pred CCCccEEeCCCCcccCCCCCCC-CCCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccce
Q 035547 145 GVNLYFLNLSQNLLVSLQEPYH-ISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGV 223 (482)
Q Consensus 145 ~~~L~~L~L~~n~i~~~~~~~~-~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~ 223 (482)
. |+.|++++|.++...+..+ .+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+.... +|+.
T Consensus 309 ~--L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~--~L~~ 384 (968)
T PLN00113 309 N--LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG--NLFK 384 (968)
T ss_pred C--CcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC--CCCE
Confidence 4 5555555554443222222 445555555555555555555555555555555555555555555554443 5666
Q ss_pred EEccCCCC-CchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCC
Q 035547 224 LNLRRNNL-GVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASN 302 (482)
Q Consensus 224 L~l~~n~l-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n 302 (482)
|++++|.+ +.+|..+..+++|+.|++++|.+++..|..|..+++|+.|++++|.+++.. +..+..+++|+.|++++|
T Consensus 385 L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~n 462 (968)
T PLN00113 385 LILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI--NSRKWDMPSLQMLSLARN 462 (968)
T ss_pred EECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCcc--ChhhccCCCCcEEECcCc
Confidence 66666655 345666777778888888888887777777888888888888888877655 333444555555555555
Q ss_pred CCcccCCHHHHHHH--------------HHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCccccccc
Q 035547 303 KFSGRLSQKWLLTM--------------MIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSS 368 (482)
Q Consensus 303 ~l~~~~~~~~~~~~--------------~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 368 (482)
.+.+.+|..+.... ....+..+++|++|++++|.+.+.+|+.+..+++|+.|+|++|.+++.+|..
T Consensus 463 ~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 542 (968)
T PLN00113 463 KFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS 542 (968)
T ss_pred eeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChh
Confidence 44443333221000 0012356778888899999998888888888999999999999999889999
Q ss_pred ccCCCCCCEEeCCCCCccccCCCC-cccCcCCCCcccCCCCCCCCC
Q 035547 369 FGNLKQIESLDLLMNNLMGKIPTS-TQLQSFLPTSYEGNKGLYIPP 413 (482)
Q Consensus 369 ~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~~~~~~ 413 (482)
|..+++|+.|++++|++++.+|.. ..+..+..+++.+|+..+..|
T Consensus 543 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 543 FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred HhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 999999999999999999888864 345566777788887665333
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=8.7e-43 Score=330.89 Aligned_cols=367 Identities=18% Similarity=0.166 Sum_probs=226.6
Q ss_pred CCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccc-------------cCCC
Q 035547 17 NLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIH-------------LLSN 83 (482)
Q Consensus 17 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~-------------~l~~ 83 (482)
.-+.||+++|.+..+.++.|.++++|+.+++.+|.++.++.......+|+.|+|.+|.|+++. |+|.
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 456799999999988888899999999999999998865544467777999999999887553 4555
Q ss_pred CcccccCCCCCcCCccccEEEccCCCCCCCCC--CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCC
Q 035547 84 NQFENQFPEISNMSSSFSKLRLASSKPWVIPI--LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSL 161 (482)
Q Consensus 84 n~l~~~~p~~~~~~~~L~~L~l~~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~ 161 (482)
|.++-.--..+....++++|+|++|+|+.+.. |.++.+|.+|.|+.|+++..-+..|..++. |+.|+|..|+|..+
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~--L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK--LESLDLNRNRIRIV 236 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcch--hhhhhccccceeee
Confidence 55443222222222556666666666665554 666666666666666666333444544655 66666666666665
Q ss_pred CCCCC-CCCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCch-hhhcc
Q 035547 162 QEPYH-ISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVV-LKSLA 239 (482)
Q Consensus 162 ~~~~~-~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~ 239 (482)
.+..| .+++++.|.+..|.+...-.+.|..+.++++|+|+.|++...-..+++++. +|++|+++.|.|..+ ++++.
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt--~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT--SLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc--hhhhhccchhhhheeecchhh
Confidence 55555 666666666666666655555666666666666666666544444555554 666666666666444 23455
Q ss_pred cCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHH
Q 035547 240 NCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMII 319 (482)
Q Consensus 240 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 319 (482)
.+++|++|||++|+++...++.|..+..|++|+|++|++.... ..+|.++++|++|||++|.+++.+.+.- .
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~--e~af~~lssL~~LdLr~N~ls~~IEDaa------~ 386 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLA--EGAFVGLSSLHKLDLRSNELSWCIEDAA------V 386 (873)
T ss_pred hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHH--hhHHHHhhhhhhhcCcCCeEEEEEecch------h
Confidence 5566666666666666666666666666666666666666555 4556666666666666666665544322 2
Q ss_pred HhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCccccCCCCcccCcCC
Q 035547 320 QLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQSFL 399 (482)
Q Consensus 320 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~ 399 (482)
.+.++++|+.|+|.+|++..+...+|.++++|++|||.+|.|..+-|++|..+ .|+.|-+..-.+- ++|++.|+.
T Consensus 387 ~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssfl----CDCql~Wl~ 461 (873)
T KOG4194|consen 387 AFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFL----CDCQLKWLA 461 (873)
T ss_pred hhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceE----EeccHHHHH
Confidence 34556666666666666665555666666666666666666665556666665 5555555433332 344444444
Q ss_pred C
Q 035547 400 P 400 (482)
Q Consensus 400 ~ 400 (482)
+
T Consensus 462 q 462 (873)
T KOG4194|consen 462 Q 462 (873)
T ss_pred H
Confidence 3
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6e-42 Score=325.24 Aligned_cols=377 Identities=18% Similarity=0.142 Sum_probs=268.9
Q ss_pred CEEeCCCCcCCCCCchhccCC--CCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCcccccCCCCcccccCCCCCc
Q 035547 19 TRVDLRSYNFTRPIPTSMANL--AQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEISN 95 (482)
Q Consensus 19 ~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~~ 95 (482)
..||.+++.+..+....+.++ +.-++||+++|++..+.... .++++|+++++.+|.++.+| ....
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP------------~f~~ 122 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIP------------RFGH 122 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcc------------cccc
Confidence 558999999988655555544 45667999999999888776 89999999999999999774 3333
Q ss_pred CCccccEEEccCCCCCCCCC--CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCC-CCCCcc
Q 035547 96 MSSSFSKLRLASSKPWVIPI--LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYH-ISGRTY 172 (482)
Q Consensus 96 ~~~~L~~L~l~~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~-~~~~l~ 172 (482)
....++.|+|.+|.|.++.+ +..++.|+.||||.|.|+..-..+|..-.+ +++|+|++|+|+.+...-| .+.+|.
T Consensus 123 ~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~n--i~~L~La~N~It~l~~~~F~~lnsL~ 200 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVN--IKKLNLASNRITTLETGHFDSLNSLL 200 (873)
T ss_pred cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCC--ceEEeeccccccccccccccccchhe
Confidence 33557777777777776665 777777777777777776333344444334 7777777777777776666 666777
Q ss_pred EEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhh-hcccCCCCCEEeCCC
Q 035547 173 SFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLK-SLANCNMLQVLDLRN 251 (482)
Q Consensus 173 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~Ls~ 251 (482)
.|.++.|+++...+..|.++++|+.|+|..|++.-.--..|..+. +|+.|.+.+|++..+.+ .|..+.++++|+|+.
T Consensus 201 tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~--Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~ 278 (873)
T KOG4194|consen 201 TLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLP--SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET 278 (873)
T ss_pred eeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCch--hhhhhhhhhcCcccccCcceeeecccceeeccc
Confidence 777777777776666777777777777777777521123333333 67777777777766654 456666777777777
Q ss_pred cccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHH-------------
Q 035547 252 NHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMI------------- 318 (482)
Q Consensus 252 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~------------- 318 (482)
|++...-.+++.++.+|+.|+|++|.|..+. .+.++.+++|++|+|++|+++...+..|...-..
T Consensus 279 N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih--~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l 356 (873)
T KOG4194|consen 279 NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH--IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL 356 (873)
T ss_pred chhhhhhcccccccchhhhhccchhhhheee--cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH
Confidence 7776666666666777777777777766655 4556666677777777777665555544432111
Q ss_pred --HHhhcCCcceEEeCCCCcccccCh---HhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCccccCCCCc
Q 035547 319 --IQLKIPNIFTSIDCSSNNFEGPMP---EEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPTST 393 (482)
Q Consensus 319 --~~~~~~~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~ 393 (482)
..+..+++|++|||++|.+++.+. ..|.+|++|+.|.+.+|+|..+...+|.+++.|+.|||.+|.+...-|...
T Consensus 357 ~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAF 436 (873)
T KOG4194|consen 357 AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAF 436 (873)
T ss_pred HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccc
Confidence 456788999999999999987654 457789999999999999997777789999999999999999987666665
Q ss_pred ccCcCCCCcccCCCCCCCCC
Q 035547 394 QLQSFLPTSYEGNKGLYIPP 413 (482)
Q Consensus 394 ~~~~~~~~~~~~n~~~~~~~ 413 (482)
.-..++++.+....++|++.
T Consensus 437 e~m~Lk~Lv~nSssflCDCq 456 (873)
T KOG4194|consen 437 EPMELKELVMNSSSFLCDCQ 456 (873)
T ss_pred ccchhhhhhhcccceEEecc
Confidence 55567777777777888653
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=8.2e-38 Score=299.27 Aligned_cols=373 Identities=21% Similarity=0.293 Sum_probs=317.0
Q ss_pred CCCCCCCCEEeCCCCcCCC-CCchhccCCCCCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccccCCCCcccccC
Q 035547 12 IGTLENLTRVDLRSYNFTR-PIPTSMANLAQLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIHLLSNNQFENQF 90 (482)
Q Consensus 12 ~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~ 90 (482)
.+-++-++-.|+++|.++| -.|+.+..|+++++|.|.+.++..++.+.+.+++|++|.+++|++.++. |.+
T Consensus 3 tgVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vh--------GEL 74 (1255)
T KOG0444|consen 3 TGVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVH--------GEL 74 (1255)
T ss_pred ccccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhh--------hhh
Confidence 4557788999999999995 4699999999999999999999877666699999999999999988662 222
Q ss_pred CCCCcCCccccEEEccCCCCC--CCCC-CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCC-
Q 035547 91 PEISNMSSSFSKLRLASSKPW--VIPI-LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYH- 166 (482)
Q Consensus 91 p~~~~~~~~L~~L~l~~n~l~--~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~- 166 (482)
.+. +.|+.+.+..|++. .||. +..+..|++||||+|++. ..|..+....+ +-.|+|++|+|.++|.+++
T Consensus 75 s~L----p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn--~iVLNLS~N~IetIPn~lfi 147 (1255)
T KOG0444|consen 75 SDL----PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKN--SIVLNLSYNNIETIPNSLFI 147 (1255)
T ss_pred ccc----hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcC--cEEEEcccCccccCCchHHH
Confidence 222 88999999999997 7888 889999999999999998 89998888877 9999999999999999999
Q ss_pred CCCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCC--CchhhhcccCCCC
Q 035547 167 ISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNL--GVVLKSLANCNML 244 (482)
Q Consensus 167 ~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~l~~L 244 (482)
.+..|..|++++|++.. +|.....+..|++|++++|.+.-.--..++.+. +|++|++++.+- ..+|..+..+.+|
T Consensus 148 nLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmt--sL~vLhms~TqRTl~N~Ptsld~l~NL 224 (1255)
T KOG0444|consen 148 NLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMT--SLSVLHMSNTQRTLDNIPTSLDDLHNL 224 (1255)
T ss_pred hhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccch--hhhhhhcccccchhhcCCCchhhhhhh
Confidence 99999999999999965 566789999999999999987632223333444 899999998754 7789999999999
Q ss_pred CEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcC
Q 035547 245 QVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIP 324 (482)
Q Consensus 245 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 324 (482)
..+|+|.|.+.. .|+.+..+++|+.|+|++|+|+... ...+.+.+|++|+||+|+++. .|+. ...+
T Consensus 225 ~dvDlS~N~Lp~-vPecly~l~~LrrLNLS~N~iteL~---~~~~~W~~lEtLNlSrNQLt~-LP~a---------vcKL 290 (1255)
T KOG0444|consen 225 RDVDLSENNLPI-VPECLYKLRNLRRLNLSGNKITELN---MTEGEWENLETLNLSRNQLTV-LPDA---------VCKL 290 (1255)
T ss_pred hhccccccCCCc-chHHHhhhhhhheeccCcCceeeee---ccHHHHhhhhhhccccchhcc-chHH---------Hhhh
Confidence 999999999975 8999999999999999999999763 456778999999999999984 4533 3578
Q ss_pred CcceEEeCCCCcccc-cChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCccccCCCCcccCcCCCCcc
Q 035547 325 NIFTSIDCSSNNFEG-PMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQSFLPTSY 403 (482)
Q Consensus 325 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~ 403 (482)
++|+.|...+|+++- -+|..++.+.+|+.+..++|.+. ..|+.++.+.+|+.|.|++|++........-+..+..+++
T Consensus 291 ~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 291 TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDL 369 (1255)
T ss_pred HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeec
Confidence 899999999999873 37889999999999999999998 8999999999999999999999865555556677888999
Q ss_pred cCCCCCCCCCCCCC
Q 035547 404 EGNKGLYIPPLTND 417 (482)
Q Consensus 404 ~~n~~~~~~~~~~~ 417 (482)
+.||.+..+|.+.+
T Consensus 370 reNpnLVMPPKP~d 383 (1255)
T KOG0444|consen 370 RENPNLVMPPKPND 383 (1255)
T ss_pred cCCcCccCCCCcch
Confidence 99999988876554
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=5.4e-36 Score=286.84 Aligned_cols=360 Identities=22% Similarity=0.281 Sum_probs=310.9
Q ss_pred CCcce-ecCCcCCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccc
Q 035547 1 NTSFL-GTLPDSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIH 79 (482)
Q Consensus 1 ~n~~~-g~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~ 79 (482)
+|-|+ +.+|.+...|+.++.|.|.+.++.. +|+.++.+.+|++|.+++|++..+..+...++.|+.+++.+|++..
T Consensus 16 gNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~-vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKn-- 92 (1255)
T KOG0444|consen 16 GNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQ-VPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKN-- 92 (1255)
T ss_pred CCcCCCCcCchhHHHhhheeEEEechhhhhh-ChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcccccc--
Confidence 47787 6799999999999999999999987 7999999999999999999998777777899999999999998753
Q ss_pred cCCCCcccccCCCCCcCCccccEEEccCCCCCCCCC-CCCCCCCCEEEcccCcccccCC-hhhhhcCCCCccEEeCCCCc
Q 035547 80 LLSNNQFENQFPEISNMSSSFSKLRLASSKPWVIPI-LKNQSQLSFFYISNNQISGEIP-NWIWEVGGVNLYFLNLSQNL 157 (482)
Q Consensus 80 ~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~~~L~~L~L~~n~ 157 (482)
+|..++.+.+ ..|+.|+|++|++.++|. +...+++-+|+||+|+|. .+| .-|.+++. |-.|||++|+
T Consensus 93 -------sGiP~diF~l-~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtD--LLfLDLS~Nr 161 (1255)
T KOG0444|consen 93 -------SGIPTDIFRL-KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTD--LLFLDLSNNR 161 (1255)
T ss_pred -------CCCCchhccc-ccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHh--Hhhhccccch
Confidence 2444666666 999999999999999999 999999999999999998 566 45668888 9999999999
Q ss_pred ccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCccc-ccCChhhhhcCcCccceEEccCCCCCchhh
Q 035547 158 LVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLS-GSIPACLITKSSTTLGVLNLRRNNLGVVLK 236 (482)
Q Consensus 158 i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 236 (482)
+..+|+.+..+..|+.|.+++|.+.-.--..+..+++|++|.+++.+-+ ..+|.++..+. +|..++++.|.+..+|.
T Consensus 162 Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~--NL~dvDlS~N~Lp~vPe 239 (1255)
T KOG0444|consen 162 LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLH--NLRDVDLSENNLPIVPE 239 (1255)
T ss_pred hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhh--hhhhccccccCCCcchH
Confidence 9999999889999999999999987654455666788999999997543 47898888888 99999999999999999
Q ss_pred hcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcc-cCCHHHHHH
Q 035547 237 SLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSG-RLSQKWLLT 315 (482)
Q Consensus 237 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~ 315 (482)
.+..+++|+.|+||+|.|++. .-......+|++|+|+.|+++.. +.+++.+++|+.|.+.+|+++- -+|...
T Consensus 240 cly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt~L---P~avcKL~kL~kLy~n~NkL~FeGiPSGI--- 312 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLTVL---PDAVCKLTKLTKLYANNNKLTFEGIPSGI--- 312 (1255)
T ss_pred HHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhccc---hHHHhhhHHHHHHHhccCcccccCCccch---
Confidence 999999999999999999974 33445567899999999999865 6889999999999999998762 344333
Q ss_pred HHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCccccCCC
Q 035547 316 MMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPT 391 (482)
Q Consensus 316 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 391 (482)
+.+.+|+++..++|.+. ..|+.++.+..|+.|.|++|++. ++|+.+.-++.|+.||+..|+--...|.
T Consensus 313 ------GKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 313 ------GKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred ------hhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence 56788899999999998 78999999999999999999998 8999999999999999999965544443
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=7.1e-36 Score=272.43 Aligned_cols=193 Identities=22% Similarity=0.324 Sum_probs=107.2
Q ss_pred cCCcCCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccc-------
Q 035547 7 TLPDSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIH------- 79 (482)
Q Consensus 7 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~------- 79 (482)
++|++++.+.+++.|+.++|++.. +|+.++.+.+|+.|+.++|.+...+++++.+..|+.++..+|++++++
T Consensus 82 ~lp~aig~l~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~ 160 (565)
T KOG0472|consen 82 QLPAAIGELEALKSLNVSHNKLSE-LPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLS 160 (565)
T ss_pred hCCHHHHHHHHHHHhhcccchHhh-ccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHH
Confidence 455666666666666666666655 555666666666666666666655555566666666666666665443
Q ss_pred -----cCCCCcccccCCCCCcCCccccEEEccCCCCCCCCC-CCCCCCCCEEEcccCcccc-------------------
Q 035547 80 -----LLSNNQFENQFPEISNMSSSFSKLRLASSKPWVIPI-LKNQSQLSFFYISNNQISG------------------- 134 (482)
Q Consensus 80 -----~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~------------------- 134 (482)
++.+|.+....|+..+| +.|++|++..|.++.+|. ++++.+|..|+|.+|+|..
T Consensus 161 ~l~~l~~~~n~l~~l~~~~i~m-~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~ 239 (565)
T KOG0472|consen 161 KLSKLDLEGNKLKALPENHIAM-KRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQ 239 (565)
T ss_pred HHHHhhccccchhhCCHHHHHH-HHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccH
Confidence 34444444444444443 555555555555555554 5555555555555555540
Q ss_pred --cCChhhh-hcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcc
Q 035547 135 --EIPNWIW-EVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNL 205 (482)
Q Consensus 135 --~~~~~~~-~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 205 (482)
.+|.... ++.. +.+|||+.|+++++|..+..+.++..||+++|.+++ +|..++++ .|+.|.+.+|.+
T Consensus 240 i~~lpae~~~~L~~--l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 240 IEMLPAEHLKHLNS--LLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred HHhhHHHHhccccc--ceeeeccccccccCchHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCch
Confidence 3333333 3444 555666666666655555555556666666665544 34445555 555555555544
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=1e-34 Score=264.81 Aligned_cols=346 Identities=23% Similarity=0.321 Sum_probs=268.4
Q ss_pred cCCcCCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccccCCCCcc
Q 035547 7 TLPDSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIHLLSNNQF 86 (482)
Q Consensus 7 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~n~l 86 (482)
++|++++.+.++..|++.+|++....|..+. ++.|++||...|-+..++|+.+.+.+|+.|+|.+|+|..+
T Consensus 151 slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~l-------- 221 (565)
T KOG0472|consen 151 SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFL-------- 221 (565)
T ss_pred cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccC--------
Confidence 3466666666666666666666664443333 6777777777777776666667777777777777777655
Q ss_pred cccCCCCCcCCccccEEEccCCCCCCCCC--CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCC
Q 035547 87 ENQFPEISNMSSSFSKLRLASSKPWVIPI--LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEP 164 (482)
Q Consensus 87 ~~~~p~~~~~~~~L~~L~l~~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~ 164 (482)
|++ ..+..|++++++.|+++.+|+ .+++.++.+|||.+|+++ ..|+.++.+.+ |+.||+++|.|+.+|..
T Consensus 222 ----Pef-~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrs--L~rLDlSNN~is~Lp~s 293 (565)
T KOG0472|consen 222 ----PEF-PGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRS--LERLDLSNNDISSLPYS 293 (565)
T ss_pred ----CCC-CccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhh--hhhhcccCCccccCCcc
Confidence 322 222889999999999999999 789999999999999998 99999999998 99999999999999988
Q ss_pred CCCCCCccEEEccCCccccc-------------------------------------Ch----hhhhcCCCCCEEeCCCC
Q 035547 165 YHISGRTYSFSTINKSLIGF-------------------------------------IP----EYICKATYFQVLDLSNN 203 (482)
Q Consensus 165 ~~~~~~l~~L~l~~n~~~~~-------------------------------------~~----~~~~~l~~L~~L~l~~n 203 (482)
+..+ +++.|-+.+|.+... .+ .....+.+.+.|++++-
T Consensus 294 Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ 372 (565)
T KOG0472|consen 294 LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK 372 (565)
T ss_pred cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc
Confidence 7766 889998888875210 00 01122345677888888
Q ss_pred cccccCChhhhhcCcC-ccceEEccCCCCCchhhhcccCCCC-CEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccc
Q 035547 204 NLSGSIPACLITKSST-TLGVLNLRRNNLGVVLKSLANCNML-QVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSER 281 (482)
Q Consensus 204 ~l~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 281 (482)
+++ .+|+..+..... -+..++++.|++.++|..+..++.+ +.+++++|.+ +..|..++.+++|+.|+|++|.+...
T Consensus 373 qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln~L 450 (565)
T KOG0472|consen 373 QLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLNDL 450 (565)
T ss_pred ccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhhhc
Confidence 887 888887765511 2778999999999999988877755 4455666655 45888899999999999999998866
Q ss_pred cCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcC
Q 035547 282 ISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNAL 361 (482)
Q Consensus 282 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 361 (482)
|..++.+-.|+.||++.|.+.. .|... --+..++.+--++|++....|+.+.+|.+|..|||.+|.+
T Consensus 451 ---P~e~~~lv~Lq~LnlS~NrFr~-lP~~~---------y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl 517 (565)
T KOG0472|consen 451 ---PEEMGSLVRLQTLNLSFNRFRM-LPECL---------YELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL 517 (565)
T ss_pred ---chhhhhhhhhheeccccccccc-chHHH---------hhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCch
Confidence 5667788889999999998873 44332 1234455556677999988888899999999999999999
Q ss_pred cccccccccCCCCCCEEeCCCCCcc
Q 035547 362 KGSIPSSFGNLKQIESLDLLMNNLM 386 (482)
Q Consensus 362 ~~~~~~~~~~l~~L~~L~l~~N~l~ 386 (482)
. .+|..++++.+|++|++++|+++
T Consensus 518 q-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 518 Q-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred h-hCChhhccccceeEEEecCCccC
Confidence 8 89999999999999999999998
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=2.7e-31 Score=265.52 Aligned_cols=379 Identities=23% Similarity=0.315 Sum_probs=272.5
Q ss_pred CcceecCCcCCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccc--
Q 035547 2 TSFLGTLPDSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIH-- 79 (482)
Q Consensus 2 n~~~g~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~-- 79 (482)
|+..+.+|..+..+.+|+.|.++.|.|.. .|.+..++.+|++|.|.+|.+...+.+...+++|++|++|+|++..+|
T Consensus 54 nn~~~~fp~~it~l~~L~~ln~s~n~i~~-vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~ 132 (1081)
T KOG0618|consen 54 NNQISSFPIQITLLSHLRQLNLSRNYIRS-VPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLV 132 (1081)
T ss_pred ccccccCCchhhhHHHHhhcccchhhHhh-CchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchh
Confidence 56677888888888899999999888887 678888889999999999988866656688999999999999887443
Q ss_pred ----------cCCCC-------------------cccccCCCCCcCCccccEEEccCCCCCCCCCCCCCCCCCEEEcccC
Q 035547 80 ----------LLSNN-------------------QFENQFPEISNMSSSFSKLRLASSKPWVIPILKNQSQLSFFYISNN 130 (482)
Q Consensus 80 ----------~l~~n-------------------~l~~~~p~~~~~~~~L~~L~l~~n~l~~l~~~~~l~~L~~L~Ls~n 130 (482)
..++| .+.+.++.....++. .|+|++|.+. +-.+..+.+|++|..+.|
T Consensus 133 i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~dls~~~~l~~l~c~rn 209 (1081)
T KOG0618|consen 133 IEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLDLSNLANLEVLHCERN 209 (1081)
T ss_pred HHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhhhhhccchhhhhhhhc
Confidence 33333 122222111111111 3555555554 222445555555555555
Q ss_pred cccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCC
Q 035547 131 QISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIP 210 (482)
Q Consensus 131 ~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 210 (482)
++.... ...+.++.|+..+|.++.. ...|...+++.++++.|++++ +|++++.+.+|+.++..+|++. .+|
T Consensus 210 ~ls~l~------~~g~~l~~L~a~~n~l~~~-~~~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp 280 (1081)
T KOG0618|consen 210 QLSELE------ISGPSLTALYADHNPLTTL-DVHPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALP 280 (1081)
T ss_pred ccceEE------ecCcchheeeeccCcceee-ccccccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhH
Confidence 554211 1112377777777777632 122356788889999998877 4588889999999999999996 788
Q ss_pred hhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhh-------------------------cC
Q 035547 211 ACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLR-------------------------NA 265 (482)
Q Consensus 211 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------------------------~l 265 (482)
..+.... +|+.|.+.+|.++.+|......++|++|||..|.+....+..+. .+
T Consensus 281 ~ri~~~~--~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~ 358 (1081)
T KOG0618|consen 281 LRISRIT--SLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNH 358 (1081)
T ss_pred HHHhhhh--hHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhh
Confidence 7777766 88888888888888888888888888888888888763332221 12
Q ss_pred CCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhh
Q 035547 266 FSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEM 345 (482)
Q Consensus 266 ~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 345 (482)
+.|+.|++.+|.++... -..+.+.++|++|+|++|++. ..|+.+. .++..|++|+||+|+++ .+|+..
T Consensus 359 ~~Lq~LylanN~Ltd~c--~p~l~~~~hLKVLhLsyNrL~-~fpas~~--------~kle~LeeL~LSGNkL~-~Lp~tv 426 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSC--FPVLVNFKHLKVLHLSYNRLN-SFPASKL--------RKLEELEELNLSGNKLT-TLPDTV 426 (1081)
T ss_pred HHHHHHHHhcCcccccc--hhhhccccceeeeeecccccc-cCCHHHH--------hchHHhHHHhcccchhh-hhhHHH
Confidence 35677788888887654 456788899999999999887 4555443 67888999999999999 578888
Q ss_pred hcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCcccc-CCCCcccCcCCCCcccCCCCC
Q 035547 346 GRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGK-IPTSTQLQSFLPTSYEGNKGL 409 (482)
Q Consensus 346 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~~~~~~~~~~~n~~~ 409 (482)
..++.|+.|...+|+|. ..| .+..+++|+.+|++.|+++.. +|.......++.+++.||+++
T Consensus 427 a~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 427 ANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred HhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 89999999999999988 777 788899999999999988743 333333367788888888854
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=1.9e-28 Score=245.25 Aligned_cols=352 Identities=20% Similarity=0.225 Sum_probs=218.5
Q ss_pred CCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccccCCCCcccccCCCCCcCC
Q 035547 18 LTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEISNMS 97 (482)
Q Consensus 18 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~~~~ 97 (482)
|+.||+++|.+.. .|..+..+.+|+.|+++.|.+...+.....+.+|+++.|..|.++.+ |..+..+
T Consensus 47 L~~l~lsnn~~~~-fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~l------------P~~~~~l 113 (1081)
T KOG0618|consen 47 LKSLDLSNNQISS-FPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSL------------PASISEL 113 (1081)
T ss_pred eEEeecccccccc-CCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcC------------chhHHhh
Confidence 5555555555544 45555555555555555555554443335555555555555554433 3333223
Q ss_pred ccccEEEccCCCCCCCCC-CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCC-CCCCcc-EE
Q 035547 98 SSFSKLRLASSKPWVIPI-LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYH-ISGRTY-SF 174 (482)
Q Consensus 98 ~~L~~L~l~~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~-~~~~l~-~L 174 (482)
++|+.|++++|.+..+|- +..++.+++++.++|.-....+ ...++.+++..|.+..- +. ....++ .+
T Consensus 114 knl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg-------~~~ik~~~l~~n~l~~~---~~~~i~~l~~~l 183 (1081)
T KOG0618|consen 114 KNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLG-------QTSIKKLDLRLNVLGGS---FLIDIYNLTHQL 183 (1081)
T ss_pred hcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhc-------cccchhhhhhhhhcccc---hhcchhhhheee
Confidence 555555555555555555 4444444444444441100000 00123333333322221 11 112222 25
Q ss_pred EccCCcccccChhhhhcC--------------------CCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCch
Q 035547 175 STINKSLIGFIPEYICKA--------------------TYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVV 234 (482)
Q Consensus 175 ~l~~n~~~~~~~~~~~~l--------------------~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 234 (482)
++.+|.+.. -.+..+ ++|+.|+.+.|.+....+.. ... +|+++++++|++..+
T Consensus 184 dLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p--~p~--nl~~~dis~n~l~~l 256 (1081)
T KOG0618|consen 184 DLRYNEMEV---LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHP--VPL--NLQYLDISHNNLSNL 256 (1081)
T ss_pred ecccchhhh---hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecccc--ccc--cceeeecchhhhhcc
Confidence 555555541 112223 34444555555444211111 112 788888888888888
Q ss_pred hhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHH
Q 035547 235 LKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLL 314 (482)
Q Consensus 235 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 314 (482)
|+++..+.+|+.++..+|++.. .|..+..+.+|+.|....|.+.... ....++++|+.|+|..|++... |+.++.
T Consensus 257 p~wi~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~yip---~~le~~~sL~tLdL~~N~L~~l-p~~~l~ 331 (1081)
T KOG0618|consen 257 PEWIGACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELEYIP---PFLEGLKSLRTLDLQSNNLPSL-PDNFLA 331 (1081)
T ss_pred hHHHHhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhhhCC---Ccccccceeeeeeehhcccccc-chHHHh
Confidence 8888888999999999998865 6777778888888888888888763 4566788999999999998744 444443
Q ss_pred HHHH-----------------------------------------HHhhcCCcceEEeCCCCcccccChHhhhcCCCCCe
Q 035547 315 TMMI-----------------------------------------IQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYA 353 (482)
Q Consensus 315 ~~~~-----------------------------------------~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 353 (482)
.... .++.+..+|+.|+|++|++.......+.+++.|++
T Consensus 332 v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~Lee 411 (1081)
T KOG0618|consen 332 VLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEE 411 (1081)
T ss_pred hhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHH
Confidence 2111 57788899999999999999777777889999999
Q ss_pred eeccCCcCcccccccccCCCCCCEEeCCCCCccccCCCCcccCcCCCCcccCC
Q 035547 354 PNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQSFLPTSYEGN 406 (482)
Q Consensus 354 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n 406 (482)
|+||+|+++ .+|.++..++.|++|-..+|++. ..|...++..+...++..|
T Consensus 412 L~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 412 LNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCN 462 (1081)
T ss_pred Hhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccc
Confidence 999999998 88899999999999999999998 4556666666766676666
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=4.9e-24 Score=235.81 Aligned_cols=335 Identities=18% Similarity=0.187 Sum_probs=265.8
Q ss_pred cCCCCCCCCCEEeCCCCc------CCCCCchhccCCC-CCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccccCC
Q 035547 10 DSIGTLENLTRVDLRSYN------FTRPIPTSMANLA-QLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIHLLS 82 (482)
Q Consensus 10 ~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~ 82 (482)
.+|.+|++|+.|.+..+. +...+|..|..++ +|+.|++.++.+...+. .....+|++|++++|++..++
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~-~f~~~~L~~L~L~~s~l~~L~--- 627 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPS-NFRPENLVKLQMQGSKLEKLW--- 627 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCC-cCCccCCcEEECcCccccccc---
Confidence 468899999999996653 3334677777774 69999999999886544 456799999999999988663
Q ss_pred CCcccccCCCCCcCCccccEEEccCCC-CCCCCCCCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCC-cccC
Q 035547 83 NNQFENQFPEISNMSSSFSKLRLASSK-PWVIPILKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQN-LLVS 160 (482)
Q Consensus 83 ~n~l~~~~p~~~~~~~~L~~L~l~~n~-l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n-~i~~ 160 (482)
......++|+.|+++++. +..+|.+..+++|++|+|++|.....+|..+..+.. |+.|++++| .++.
T Consensus 628 ---------~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~--L~~L~L~~c~~L~~ 696 (1153)
T PLN03210 628 ---------DGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNK--LEDLDMSRCENLEI 696 (1153)
T ss_pred ---------cccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCC--CCEEeCCCCCCcCc
Confidence 222233899999999875 678888999999999999998776789999999988 999999986 6777
Q ss_pred CCCCCCCCCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhh----
Q 035547 161 LQEPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLK---- 236 (482)
Q Consensus 161 ~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---- 236 (482)
+|..+ .+++|+.|++++|.....+|.. ..+|+.|++++|.+. .+|..+ .. ++|++|++.++....++.
T Consensus 697 Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l--~~L~~L~l~~~~~~~l~~~~~~ 768 (1153)
T PLN03210 697 LPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RL--ENLDELILCEMKSEKLWERVQP 768 (1153)
T ss_pred cCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cc--cccccccccccchhhccccccc
Confidence 76544 6889999999999776655543 468999999999987 777654 23 388889888754422221
Q ss_pred ----hcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHH
Q 035547 237 ----SLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKW 312 (482)
Q Consensus 237 ----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 312 (482)
.....++|+.|++++|.....+|..++++++|+.|++++|...+..| ... .+++|+.|++++|.....+|
T Consensus 769 l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP--~~~-~L~sL~~L~Ls~c~~L~~~p--- 842 (1153)
T PLN03210 769 LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP--TGI-NLESLESLDLSGCSRLRTFP--- 842 (1153)
T ss_pred cchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC--CCC-CccccCEEECCCCCcccccc---
Confidence 22345789999999998777789999999999999999986444442 222 78999999999987555554
Q ss_pred HHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCC-cCcccccccccCCCCCCEEeCCCCC
Q 035547 313 LLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHN-ALKGSIPSSFGNLKQIESLDLLMNN 384 (482)
Q Consensus 313 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 384 (482)
....++++|+|++|.++ .+|..+..+++|+.|+|++| ++. .+|..+..+++|+.+++++|.
T Consensus 843 ---------~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 843 ---------DISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ---------ccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence 24578999999999998 68889999999999999996 565 678888899999999999884
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.92 E-value=4.5e-24 Score=220.18 Aligned_cols=261 Identities=22% Similarity=0.256 Sum_probs=128.4
Q ss_pred CCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccccCCCCcccccCCCCCcCCccccEEEccCCCCCCCCCCCCCC
Q 035547 41 QLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEISNMSSSFSKLRLASSKPWVIPILKNQS 120 (482)
Q Consensus 41 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~l~~~~~l~ 120 (482)
.-..|++++|.++.+++... ++|+.|++++|+|+.++ .. .++|+.|++++|+++.+|.+ .+
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP------------~l---p~~Lk~LdLs~N~LtsLP~l--p~ 262 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLP------------AL---PPELRTLEVSGNQLTSLPVL--PP 262 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCC------------CC---CCCCcEEEecCCccCcccCc--cc
Confidence 34556666666664443222 25666666666665442 10 14566666666666655542 24
Q ss_pred CCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCCCEEeC
Q 035547 121 QLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLDL 200 (482)
Q Consensus 121 ~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 200 (482)
+|+.|++++|.++ .+|..+ .. |+.|++++|+++.++. . .++|+.|++
T Consensus 263 sL~~L~Ls~N~L~-~Lp~lp---~~--L~~L~Ls~N~Lt~LP~---~------------------------p~~L~~LdL 309 (788)
T PRK15387 263 GLLELSIFSNPLT-HLPALP---SG--LCKLWIFGNQLTSLPV---L------------------------PPGLQELSV 309 (788)
T ss_pred ccceeeccCCchh-hhhhch---hh--cCEEECcCCccccccc---c------------------------ccccceeEC
Confidence 5666666666665 344322 22 6666666666665432 1 233444455
Q ss_pred CCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCcccc
Q 035547 201 SNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSE 280 (482)
Q Consensus 201 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 280 (482)
++|++. .+|... . +|+.|++++|.++.+|.. ..+|+.|++++|++++ +|.. ..+|+.|++++|.+..
T Consensus 310 S~N~L~-~Lp~lp---~--~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~ 376 (788)
T PRK15387 310 SDNQLA-SLPALP---S--ELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS 376 (788)
T ss_pred CCCccc-cCCCCc---c--cccccccccCcccccccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc
Confidence 444444 233211 1 344455555555444421 1345555555555544 2221 1344555555555543
Q ss_pred ccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCc
Q 035547 281 RISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNA 360 (482)
Q Consensus 281 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 360 (482)
.. . ...+|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|.. ..+|+.|++++|+
T Consensus 377 LP---~---l~~~L~~LdLs~N~Lt~-LP~------------l~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~Nq 433 (788)
T PRK15387 377 LP---A---LPSGLKELIVSGNRLTS-LPV------------LPSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQ 433 (788)
T ss_pred Cc---c---cccccceEEecCCcccC-CCC------------cccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCc
Confidence 21 1 12345555555555553 221 23445555555555553 3322 2345556666666
Q ss_pred CcccccccccCCCCCCEEeCCCCCccccCC
Q 035547 361 LKGSIPSSFGNLKQIESLDLLMNNLMGKIP 390 (482)
Q Consensus 361 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 390 (482)
|+ .+|..+..+++|+.|++++|++++.++
T Consensus 434 Lt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 434 LT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred cc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 65 556666666666666666666665443
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.91 E-value=5.2e-24 Score=219.68 Aligned_cols=265 Identities=22% Similarity=0.281 Sum_probs=177.6
Q ss_pred CCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccccCCCCcccccCCCCCc
Q 035547 16 ENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEISN 95 (482)
Q Consensus 16 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~~ 95 (482)
..-..|+++++.++. +|..+. ++|+.|++++|+++.++. ..++|++|++++|+|+.++ ..
T Consensus 201 ~~~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP------------~l-- 260 (788)
T PRK15387 201 NGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLP------------VL-- 260 (788)
T ss_pred CCCcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCccc------------Cc--
Confidence 456789999999996 677765 489999999999997543 4689999999999998774 11
Q ss_pred CCccccEEEccCCCCCCCCCCCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEE
Q 035547 96 MSSSFSKLRLASSKPWVIPILKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFS 175 (482)
Q Consensus 96 ~~~~L~~L~l~~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~ 175 (482)
.++|+.|++++|.+..+|.+ .++|+.|++++|+++ .+|.. .+. |+.|++++|+++.++.. ..
T Consensus 261 -p~sL~~L~Ls~N~L~~Lp~l--p~~L~~L~Ls~N~Lt-~LP~~---p~~--L~~LdLS~N~L~~Lp~l---p~------ 322 (788)
T PRK15387 261 -PPGLLELSIFSNPLTHLPAL--PSGLCKLWIFGNQLT-SLPVL---PPG--LQELSVSDNQLASLPAL---PS------ 322 (788)
T ss_pred -ccccceeeccCCchhhhhhc--hhhcCEEECcCCccc-ccccc---ccc--cceeECCCCccccCCCC---cc------
Confidence 17899999999999988872 257889999999998 56653 234 99999999999987531 12
Q ss_pred ccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccC
Q 035547 176 TINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHIS 255 (482)
Q Consensus 176 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~ 255 (482)
.|+.|++++|++. .+|... . +|+.|++++|+++.+|.. ..+|+.|++++|.+.
T Consensus 323 ------------------~L~~L~Ls~N~L~-~LP~lp---~--~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~ 375 (788)
T PRK15387 323 ------------------ELCKLWAYNNQLT-SLPTLP---S--GLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT 375 (788)
T ss_pred ------------------cccccccccCccc-cccccc---c--ccceEecCCCccCCCCCC---Ccccceehhhccccc
Confidence 2444455555554 333211 1 555555555555555532 234555666666665
Q ss_pred CCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCC
Q 035547 256 DNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSN 335 (482)
Q Consensus 256 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 335 (482)
+ +|.. ..+|+.|++++|.+++... ..++|+.|++++|.+++ +|. .+.+|+.|++++|
T Consensus 376 ~-LP~l---~~~L~~LdLs~N~Lt~LP~------l~s~L~~LdLS~N~Lss-IP~------------l~~~L~~L~Ls~N 432 (788)
T PRK15387 376 S-LPAL---PSGLKELIVSGNRLTSLPV------LPSELKELMVSGNRLTS-LPM------------LPSGLLSLSVYRN 432 (788)
T ss_pred c-Cccc---ccccceEEecCCcccCCCC------cccCCCEEEccCCcCCC-CCc------------chhhhhhhhhccC
Confidence 4 3322 2356666666666664321 12456667777776664 331 1235666777777
Q ss_pred cccccChHhhhcCCCCCeeeccCCcCcccccccc
Q 035547 336 NFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSF 369 (482)
Q Consensus 336 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 369 (482)
.++ .+|..+.++++|+.|+|++|++++..+..+
T Consensus 433 qLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 433 QLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 777 567777778888888888888876666555
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=3.8e-27 Score=215.23 Aligned_cols=347 Identities=21% Similarity=0.220 Sum_probs=195.7
Q ss_pred CCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcC-CCCcccccCCCCcccccCCCCC
Q 035547 17 NLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSS-NNLNEIHLLSNNQFENQFPEIS 94 (482)
Q Consensus 17 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~-N~i~~l~~l~~n~l~~~~p~~~ 94 (482)
.-..++|..|+|+.+-+.+|+.+++||.||||+|.|+.+.|+. .++++|..|-+-+ |+|+.++ ...|
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~-----------k~~F 136 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP-----------KGAF 136 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh-----------hhHh
Confidence 3455566666666655556666666666666666666665555 5555555444433 5665443 1122
Q ss_pred cCCccccEEEccCCCCCCCCC--CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCc---------------
Q 035547 95 NMSSSFSKLRLASSKPWVIPI--LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNL--------------- 157 (482)
Q Consensus 95 ~~~~~L~~L~l~~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~--------------- 157 (482)
+.+.+++.|.+.-|++.-++. |..++++..|.+-+|.+......+|..+.. ++.+.+..|.
T Consensus 137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~--i~tlhlA~np~icdCnL~wla~~~a 214 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAA--IKTLHLAQNPFICDCNLPWLADDLA 214 (498)
T ss_pred hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhc--cchHhhhcCccccccccchhhhHHh
Confidence 222444444444444443333 444444444444444444222224444444 4444444443
Q ss_pred ---------------------ccCCCCCCCCCCCccEE---EccCCcccccC-hhhhhcCCCCCEEeCCCCcccccCChh
Q 035547 158 ---------------------LVSLQEPYHISGRTYSF---STINKSLIGFI-PEYICKATYFQVLDLSNNNLSGSIPAC 212 (482)
Q Consensus 158 ---------------------i~~~~~~~~~~~~l~~L---~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~ 212 (482)
+..+++.-| ...++.+ ..+.+...+.. ...|.++++|++|++++|+++..-+.+
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf-~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a 293 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKF-LCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA 293 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhh-hhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence 333322222 0112222 11222233333 356888999999999999998777888
Q ss_pred hhhcCcCccceEEccCCCCCchhh-hcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCcccccc---------
Q 035547 213 LITKSSTTLGVLNLRRNNLGVVLK-SLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERI--------- 282 (482)
Q Consensus 213 ~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~--------- 282 (482)
|.... ++++|+|.+|++..+.. .|.++..|+.|+|.+|+|+...|..|..+..|.+|+|-.|.+...-
T Consensus 294 Fe~~a--~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wl 371 (498)
T KOG4237|consen 294 FEGAA--ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWL 371 (498)
T ss_pred hcchh--hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHH
Confidence 88877 89999999999977764 6788889999999999998888888988899999999888765210
Q ss_pred CCCCCC-----CCCCCCCEEecCCCCCcc---cCCH--------------HHHHHHHH-------H-HhhcCCcceEEeC
Q 035547 283 SCPRNN-----VSWPLLKIVDLASNKFSG---RLSQ--------------KWLLTMMI-------I-QLKIPNIFTSIDC 332 (482)
Q Consensus 283 ~~~~~~-----~~l~~L~~L~Ls~n~l~~---~~~~--------------~~~~~~~~-------~-~~~~~~~L~~L~L 332 (482)
...... +.-..++.+.+++..+.. ..|+ .....+.. . .-+.+...+++++
T Consensus 372 r~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl 451 (498)
T KOG4237|consen 372 RKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYL 451 (498)
T ss_pred hhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhc
Confidence 000000 112245566666554421 1111 11111111 0 0122334456777
Q ss_pred CCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCC
Q 035547 333 SSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMN 383 (482)
Q Consensus 333 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 383 (482)
.+|.++ .+|+. .+.+| .+|+++|++....-..|.++.+|.+|-+++|
T Consensus 452 ~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 452 DGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred ccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 777777 44544 45566 6777777776555556777777777777765
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=4.8e-23 Score=227.94 Aligned_cols=336 Identities=16% Similarity=0.152 Sum_probs=255.6
Q ss_pred CchhccCCCCCCEEeCCCCccc------CCCCC-CCC-CCCCCEEECcCCCCcccccCCCCcccccCCCCCcCCccccEE
Q 035547 32 IPTSMANLAQLFHMDFSSNHFS------GPIPS-LHK-SRNLNYLDLSSNNLNEIHLLSNNQFENQFPEISNMSSSFSKL 103 (482)
Q Consensus 32 ~~~~~~~l~~L~~L~L~~n~l~------~~~~~-~~~-l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~~~~~~L~~L 103 (482)
.+.+|.+|++|+.|.+..+... ...|. ... .++|+.|++.++.++.+ |..+.. .+|++|
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~l------------P~~f~~-~~L~~L 616 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCM------------PSNFRP-ENLVKL 616 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCC------------CCcCCc-cCCcEE
Confidence 4567999999999999766432 22233 333 46799999999998876 344433 889999
Q ss_pred EccCCCCCCCCC-CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCC-cccCCCCCCCCCCCccEEEccCCcc
Q 035547 104 RLASSKPWVIPI-LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQN-LLVSLQEPYHISGRTYSFSTINKSL 181 (482)
Q Consensus 104 ~l~~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n-~i~~~~~~~~~~~~l~~L~l~~n~~ 181 (482)
++.+|.+..++. +..+++|+.|+|+++.....+|. +..+++ |+.|++++| .+..+|..+..+++|+.|++++|..
T Consensus 617 ~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~--Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~ 693 (1153)
T PLN03210 617 QMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATN--LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN 693 (1153)
T ss_pred ECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCc--ccEEEecCCCCccccchhhhccCCCCEEeCCCCCC
Confidence 999999999988 89999999999998765557774 666766 999999987 4777777767889999999999877
Q ss_pred cccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCccc-------
Q 035547 182 IGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHI------- 254 (482)
Q Consensus 182 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l------- 254 (482)
...+|..+ .+++|+.|++++|.....+|.. .. +|+.|++++|.++.+|..+ .+++|+.|++.++..
T Consensus 694 L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~--nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~ 766 (1153)
T PLN03210 694 LEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---ST--NISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERV 766 (1153)
T ss_pred cCccCCcC-CCCCCCEEeCCCCCCccccccc---cC--CcCeeecCCCccccccccc-cccccccccccccchhhccccc
Confidence 66677655 7899999999998765566643 22 8999999999999999765 578999999887432
Q ss_pred CCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCC
Q 035547 255 SDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSS 334 (482)
Q Consensus 255 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 334 (482)
....+..+...++|+.|++++|...+.. +..++++++|+.|++++|...+.+|.. ..+++|+.|++++
T Consensus 767 ~~l~~~~~~~~~sL~~L~Ls~n~~l~~l--P~si~~L~~L~~L~Ls~C~~L~~LP~~----------~~L~sL~~L~Ls~ 834 (1153)
T PLN03210 767 QPLTPLMTMLSPSLTRLFLSDIPSLVEL--PSSIQNLHKLEHLEIENCINLETLPTG----------INLESLESLDLSG 834 (1153)
T ss_pred cccchhhhhccccchheeCCCCCCcccc--ChhhhCCCCCCEEECCCCCCcCeeCCC----------CCccccCEEECCC
Confidence 1222333344579999999999876655 567899999999999998655556642 2578999999999
Q ss_pred CcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCC-CccccCCCCcccCcCCCCcccCC
Q 035547 335 NNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMN-NLMGKIPTSTQLQSFLPTSYEGN 406 (482)
Q Consensus 335 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~p~~~~~~~~~~~~~~~n 406 (482)
|.....+|.. .++|+.|+|++|.++ .+|.++..+++|+.|++++| ++.+..+....+..+..+.+.++
T Consensus 835 c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 835 CSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 8765555543 468999999999998 78999999999999999984 55543333334444444444443
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=1.8e-24 Score=197.88 Aligned_cols=276 Identities=16% Similarity=0.131 Sum_probs=213.1
Q ss_pred ccccEEEccCCCCCCCCC--CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCC-CcccCCCCCCC-CCCCccE
Q 035547 98 SSFSKLRLASSKPWVIPI--LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQ-NLLVSLQEPYH-ISGRTYS 173 (482)
Q Consensus 98 ~~L~~L~l~~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~-n~i~~~~~~~~-~~~~l~~ 173 (482)
....+++|..|+|+.||. |+.+++|+.||||+|+|+.+.|++|.++.. +.+|-+.+ |+|++++...| .+..++-
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~--l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLAS--LLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHh--hhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 667899999999999998 999999999999999999999999999988 77766555 99999999888 8899999
Q ss_pred EEccCCcccccChhhhhcCCCCCEEeCCCCcccccCCh-hhhhcCcCccceEEccCCCC-------------Cchhhhcc
Q 035547 174 FSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPA-CLITKSSTTLGVLNLRRNNL-------------GVVLKSLA 239 (482)
Q Consensus 174 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~~L~~L~l~~n~l-------------~~~~~~~~ 239 (482)
|.+.-|++.-...++|..+++|..|.+-+|.+. .++. .+.... .++++++..|.. ...|..++
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~--~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLA--AIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchh--ccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 999999998888899999999999999999887 5554 555555 888888888873 11222344
Q ss_pred cCCCCCEEeCCCcccCCCcChhhhcC-CCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHH
Q 035547 240 NCNMLQVLDLRNNHISDNFPCWLRNA-FSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMI 318 (482)
Q Consensus 240 ~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 318 (482)
+.....-..+.++++..+.+..|... ..+..-..+.......-| ...|..+++|+.|+|++|.+++.-+..|
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP-~~cf~~L~~L~~lnlsnN~i~~i~~~aF------ 294 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICP-AKCFKKLPNLRKLNLSNNKITRIEDGAF------ 294 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcCh-HHHHhhcccceEeccCCCccchhhhhhh------
Confidence 44455555555555555444444321 112111112222222222 4457888999999999999987666444
Q ss_pred HHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCcccc
Q 035547 319 IQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGK 388 (482)
Q Consensus 319 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 388 (482)
++..++++|.|..|++..+....|.++..|+.|+|.+|+|+...|..|..+.+|.+|++-.|++.+.
T Consensus 295 ---e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 295 ---EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred ---cchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence 6788899999999999877788899999999999999999988999999999999999999988743
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.87 E-value=4.6e-22 Score=206.61 Aligned_cols=223 Identities=25% Similarity=0.383 Sum_probs=127.6
Q ss_pred CCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccccCCCCcccccCCCCCc
Q 035547 16 ENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEISN 95 (482)
Q Consensus 16 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~~ 95 (482)
.+..+|+++++.++. +|..+. ++|+.|++++|+++.++.... .+|++|++++|+++.++ ..+|
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP--------~~l~---- 240 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIP--------ATLP---- 240 (754)
T ss_pred cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCC--------hhhh----
Confidence 456788888888886 565443 578888888888886654333 47888888888877553 0111
Q ss_pred CCccccEEEccCCCCCCCCC-CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEE
Q 035547 96 MSSSFSKLRLASSKPWVIPI-LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSF 174 (482)
Q Consensus 96 ~~~~L~~L~l~~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L 174 (482)
..|+.|++++|.+..+|. +. ++|+.|++++|+++ .+|..+. .. |+.|++++|+++.++..++ .+++.|
T Consensus 241 --~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~s--L~~L~Ls~N~Lt~LP~~lp--~sL~~L 309 (754)
T PRK15370 241 --DTIQEMELSINRITELPERLP--SALQSLDLFHNKIS-CLPENLP--EE--LRYLSVYDNSIRTLPAHLP--SGITHL 309 (754)
T ss_pred --ccccEEECcCCccCcCChhHh--CCCCEEECcCCccC-ccccccC--CC--CcEEECCCCccccCcccch--hhHHHH
Confidence 467888888888887776 43 46788888888887 5666543 23 8888888887777654322 244555
Q ss_pred EccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCccc
Q 035547 175 STINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHI 254 (482)
Q Consensus 175 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l 254 (482)
++++|.+.. +|..+ .++|+.|++++|.++ .+|..+. . +|+.|++++|.++.+|..+. ++|+.|++++|.+
T Consensus 310 ~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~--sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~L 379 (754)
T PRK15370 310 NVQSNSLTA-LPETL--PPGLKTLEAGENALT-SLPASLP--P--ELQVLDVSKNQITVLPETLP--PTITTLDVSRNAL 379 (754)
T ss_pred HhcCCcccc-CCccc--cccceeccccCCccc-cCChhhc--C--cccEEECCCCCCCcCChhhc--CCcCEEECCCCcC
Confidence 555555543 22211 134555555555544 2443322 1 45555555555544444331 3455555555554
Q ss_pred CCCcChhhhcCCCCcEEEcccCccc
Q 035547 255 SDNFPCWLRNAFSLQVLVFRSNNFS 279 (482)
Q Consensus 255 ~~~~~~~~~~l~~L~~L~L~~N~i~ 279 (482)
++ +|..+. .+|+.|++++|++.
T Consensus 380 t~-LP~~l~--~sL~~LdLs~N~L~ 401 (754)
T PRK15370 380 TN-LPENLP--AALQIMQASRNNLV 401 (754)
T ss_pred CC-CCHhHH--HHHHHHhhccCCcc
Confidence 43 232222 13444444444444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.85 E-value=6.6e-21 Score=198.04 Aligned_cols=246 Identities=23% Similarity=0.335 Sum_probs=168.0
Q ss_pred ccccEEEccCCCCCCCCC-CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEc
Q 035547 98 SSFSKLRLASSKPWVIPI-LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFST 176 (482)
Q Consensus 98 ~~L~~L~l~~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l 176 (482)
.+...|+++++.++.+|. +. ++|+.|+|++|+++ .+|..+. .+ |++|++++|+++.+|..++ .+++.|++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~n--L~~L~Ls~N~LtsLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPENLQ--GN--IKTLYANSNQLTSIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCChhhc--cC--CCEEECCCCccccCChhhh--ccccEEEC
Confidence 445677777777777776 42 46777777777777 5565443 23 7777777777777655433 35777777
Q ss_pred cCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCC
Q 035547 177 INKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISD 256 (482)
Q Consensus 177 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 256 (482)
++|.+.. +|..+. .+|+.|++++|++. .+|..+. . +|+.|++++|.++.+|..+. ++|+.|++++|.++.
T Consensus 249 s~N~L~~-LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~--sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 249 SINRITE-LPERLP--SALQSLDLFHNKIS-CLPENLP--E--ELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTA 318 (754)
T ss_pred cCCccCc-CChhHh--CCCCEEECcCCccC-ccccccC--C--CCcEEECCCCccccCcccch--hhHHHHHhcCCcccc
Confidence 7777763 455443 46888888888887 5666543 2 78888888888887776543 478888888888876
Q ss_pred CcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCc
Q 035547 257 NFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNN 336 (482)
Q Consensus 257 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 336 (482)
+|..+ .++|+.|++++|.+++.. ..+ .++|+.|++++|.++. +|.. .+++|++|++++|.
T Consensus 319 -LP~~l--~~sL~~L~Ls~N~Lt~LP---~~l--~~sL~~L~Ls~N~L~~-LP~~-----------lp~~L~~LdLs~N~ 378 (754)
T PRK15370 319 -LPETL--PPGLKTLEAGENALTSLP---ASL--PPELQVLDVSKNQITV-LPET-----------LPPTITTLDVSRNA 378 (754)
T ss_pred -CCccc--cccceeccccCCccccCC---hhh--cCcccEEECCCCCCCc-CChh-----------hcCCcCEEECCCCc
Confidence 34433 257888888888887642 222 3678888888888873 4432 24678888888888
Q ss_pred ccccChHhhhcCCCCCeeeccCCcCcccccccc----cCCCCCCEEeCCCCCcc
Q 035547 337 FEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSF----GNLKQIESLDLLMNNLM 386 (482)
Q Consensus 337 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~l~~L~~L~l~~N~l~ 386 (482)
++. +|..+. .+|+.|++++|+++ .+|..+ ..++.+..+++.+|+++
T Consensus 379 Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 379 LTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 884 455443 36888888888887 555544 33477788888888876
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.78 E-value=2e-19 Score=173.41 Aligned_cols=210 Identities=20% Similarity=0.198 Sum_probs=98.7
Q ss_pred CccEEEccCCcccccChhhhhcCCC---CCEEeCCCCcccc----cCChhhhhcCcCccceEEccCCCCC-----chhhh
Q 035547 170 RTYSFSTINKSLIGFIPEYICKATY---FQVLDLSNNNLSG----SIPACLITKSSTTLGVLNLRRNNLG-----VVLKS 237 (482)
Q Consensus 170 ~l~~L~l~~n~~~~~~~~~~~~l~~---L~~L~l~~n~l~~----~~~~~~~~~~~~~L~~L~l~~n~l~-----~~~~~ 237 (482)
+++.|++++|.+.+..+..+..+.. |+.|++++|++.+ .+...+... .++|++|++++|.++ .++..
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~-~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDL-PPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhC-CCCceEEEcCCCcCCchHHHHHHHH
Confidence 3334444444333333333333333 6666666665542 111122222 025566666666554 23334
Q ss_pred cccCCCCCEEeCCCcccCCC----cChhhhcCCCCcEEEcccCccccccC--CCCCCCCCCCCCEEecCCCCCcccCCHH
Q 035547 238 LANCNMLQVLDLRNNHISDN----FPCWLRNAFSLQVLVFRSNNFSERIS--CPRNNVSWPLLKIVDLASNKFSGRLSQK 311 (482)
Q Consensus 238 ~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 311 (482)
+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+... ....+..+++|++|++++|.+++.....
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 45555666666666666531 12223344566666666666543210 1123445566666666666655422111
Q ss_pred HHHHHHHHHhhcCCcceEEeCCCCcccc----cChHhhhcCCCCCeeeccCCcCccc----ccccccCC-CCCCEEeCCC
Q 035547 312 WLLTMMIIQLKIPNIFTSIDCSSNNFEG----PMPEEMGRFKSLYAPNMSHNALKGS----IPSSFGNL-KQIESLDLLM 382 (482)
Q Consensus 312 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l-~~L~~L~l~~ 382 (482)
+.. ........|++|++++|.++. .+...+..+++|+++++++|.++.. ....+... +.++.+++.+
T Consensus 241 l~~----~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 241 LAS----ALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred HHH----HHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 110 011123566666666666642 1223344455666666666666532 33333333 4566666666
Q ss_pred CC
Q 035547 383 NN 384 (482)
Q Consensus 383 N~ 384 (482)
|+
T Consensus 317 ~~ 318 (319)
T cd00116 317 DS 318 (319)
T ss_pred CC
Confidence 54
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=4.2e-19 Score=171.13 Aligned_cols=263 Identities=20% Similarity=0.172 Sum_probs=178.8
Q ss_pred EEEccCCCCC--CCCC-CCCCCCCCEEEcccCccccc----CChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEE
Q 035547 102 KLRLASSKPW--VIPI-LKNQSQLSFFYISNNQISGE----IPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSF 174 (482)
Q Consensus 102 ~L~l~~n~l~--~l~~-~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L 174 (482)
.|+|.++.+. .... +..+.+|++|+++++.++.. ++..+...+. ++.|+++++.+...+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~--l~~l~l~~~~~~~~~~----------- 68 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPS--LKELCLSLNETGRIPR----------- 68 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCC--ceEEeccccccCCcch-----------
Confidence 3555555554 3333 55566677777777766432 2233333333 6666666655442110
Q ss_pred EccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCc-CccceEEccCCCCC-----chhhhcccC-CCCCEE
Q 035547 175 STINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSS-TTLGVLNLRRNNLG-----VVLKSLANC-NMLQVL 247 (482)
Q Consensus 175 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-~~L~~L~l~~n~l~-----~~~~~~~~l-~~L~~L 247 (482)
....++..+..+++|+.|++++|.+.+..+..+..... ++|++|++++|.++ .+...+..+ ++|++|
T Consensus 69 ------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L 142 (319)
T cd00116 69 ------GLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL 142 (319)
T ss_pred ------HHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEE
Confidence 01224567788999999999999997655555544330 24999999999986 234456677 899999
Q ss_pred eCCCcccCCC----cChhhhcCCCCcEEEcccCccccccC--CCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHh
Q 035547 248 DLRNNHISDN----FPCWLRNAFSLQVLVFRSNNFSERIS--CPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQL 321 (482)
Q Consensus 248 ~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 321 (482)
++++|.+++. .+..+..+.+|++|++++|.+++... ....+..+++|+.|++++|.+++.....+. ..+
T Consensus 143 ~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~-----~~~ 217 (319)
T cd00116 143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA-----ETL 217 (319)
T ss_pred EcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH-----HHh
Confidence 9999999842 34456778899999999999984210 122345567999999999998754332222 344
Q ss_pred hcCCcceEEeCCCCcccccChHhhhc-----CCCCCeeeccCCcCcc----cccccccCCCCCCEEeCCCCCcccc
Q 035547 322 KIPNIFTSIDCSSNNFEGPMPEEMGR-----FKSLYAPNMSHNALKG----SIPSSFGNLKQIESLDLLMNNLMGK 388 (482)
Q Consensus 322 ~~~~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~ 388 (482)
..+++|++|++++|.+++.....+.. .+.|++|++++|.++. .+...+..+++|+.+++++|.++..
T Consensus 218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 67789999999999998644444432 3799999999999962 3445667778999999999998843
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=2.8e-19 Score=145.89 Aligned_cols=187 Identities=24% Similarity=0.279 Sum_probs=138.3
Q ss_pred CCCCCCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhc
Q 035547 112 VIPILKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICK 191 (482)
Q Consensus 112 ~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~ 191 (482)
.+|.+.++.+++.|.||+|+++ .+|..+..+.+ |+.|++++|+|+.+|..+..++.++.|+++-|++. ..|..|+.
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~-~vppnia~l~n--levln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs 100 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLT-VVPPNIAELKN--LEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGS 100 (264)
T ss_pred hcccccchhhhhhhhcccCcee-ecCCcHHHhhh--hhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCC
Confidence 3444555666666667777766 55656666666 77777777777776666666666777776666653 36788999
Q ss_pred CCCCCEEeCCCCcccc-cCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcE
Q 035547 192 ATYFQVLDLSNNNLSG-SIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQV 270 (482)
Q Consensus 192 l~~L~~L~l~~n~l~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 270 (482)
++.|++||+.+|++.. .+|..|+.+. .|+.|++++|.++.+|..++.+++|+.|.+.+|.+-+ .|..++.+..|++
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~--tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lre 177 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMT--TLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRE 177 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHH--HHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHH
Confidence 9999999999998874 5788888887 9999999999999999999999999999999999887 7888999999999
Q ss_pred EEcccCccccccCCCCCCCCCCCCCEEecCCCCCc
Q 035547 271 LVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFS 305 (482)
Q Consensus 271 L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 305 (482)
|.+.+|+++-..|.-..+.-..+=+++.+.+|.+.
T Consensus 178 lhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 178 LHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred HhcccceeeecChhhhhhhhhhhHHHHhhhhCCCC
Confidence 99999999866532222222222333444455544
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=8.1e-19 Score=143.23 Aligned_cols=163 Identities=24% Similarity=0.353 Sum_probs=119.4
Q ss_pred CCCCCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccccCCCCcccccCCCCCcCCccccEEEccCCCCCCCCC-C
Q 035547 38 NLAQLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEISNMSSSFSKLRLASSKPWVIPI-L 116 (482)
Q Consensus 38 ~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~l~~-~ 116 (482)
.+.+.+.|.||+|+++.++|.+..+.+|+.|++++|+|++++ ....-+++|+.|+++-|++..+|. |
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp------------~~issl~klr~lnvgmnrl~~lprgf 98 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELP------------TSISSLPKLRILNVGMNRLNILPRGF 98 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcC------------hhhhhchhhhheecchhhhhcCcccc
Confidence 345666677777777777776677777777777777776663 111111556666666666666677 8
Q ss_pred CCCCCCCEEEcccCcccc-cCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCC
Q 035547 117 KNQSQLSFFYISNNQISG-EIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYF 195 (482)
Q Consensus 117 ~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L 195 (482)
+.++.|++|||++|++.. .+|..|+.++. |+.|.|+.|.+.-+ |...+++++|
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~t--lralyl~dndfe~l------------------------p~dvg~lt~l 152 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTT--LRALYLGDNDFEIL------------------------PPDVGKLTNL 152 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHH--HHHHHhcCCCcccC------------------------Chhhhhhcce
Confidence 888888888888888864 67777777777 88888888777764 5667888889
Q ss_pred CEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccC
Q 035547 196 QVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANC 241 (482)
Q Consensus 196 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l 241 (482)
+.|.+.+|.+. .+|..+..+. .|++|++.+|.++.+|..++.+
T Consensus 153 qil~lrdndll-~lpkeig~lt--~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 153 QILSLRDNDLL-SLPKEIGDLT--RLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred eEEeeccCchh-hCcHHHHHHH--HHHHHhcccceeeecChhhhhh
Confidence 99999988887 7888888877 8888888888888888766543
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.54 E-value=3.6e-14 Score=147.30 Aligned_cols=118 Identities=26% Similarity=0.403 Sum_probs=103.4
Q ss_pred CCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCC
Q 035547 293 LLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNL 372 (482)
Q Consensus 293 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 372 (482)
.++.|+|++|.+.+.+|..+ ..+++|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|..+..+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i---------~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L 489 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI---------SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489 (623)
T ss_pred EEEEEECCCCCccccCCHHH---------hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcC
Confidence 47889999999999999765 578999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEeCCCCCccccCCCCcc--cCcCCCCcccCCCCCCCCCCCCCCC
Q 035547 373 KQIESLDLLMNNLMGKIPTSTQ--LQSFLPTSYEGNKGLYIPPLTNDIQ 419 (482)
Q Consensus 373 ~~L~~L~l~~N~l~~~~p~~~~--~~~~~~~~~~~n~~~~~~~~~~~c~ 419 (482)
++|+.|++++|+++|.+|.... ........+.+|+.+|+.|....|.
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999999999999997532 1234466788999999877666674
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.48 E-value=1e-14 Score=132.54 Aligned_cols=139 Identities=16% Similarity=0.167 Sum_probs=70.0
Q ss_pred CCCCEEeCCCcccCCC----cChhhhcCCCCcEEEcccCccccc--cCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHH
Q 035547 242 NMLQVLDLRNNHISDN----FPCWLRNAFSLQVLVFRSNNFSER--ISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLT 315 (482)
Q Consensus 242 ~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 315 (482)
+.|++++.++|++... ....|...+.|+.+.+..|.|... ......+..+++|++|||.+|.++.... .
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs-----~ 231 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS-----V 231 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH-----H
Confidence 4555555555555432 123344445555555555555421 1112234455566666666655542211 2
Q ss_pred HHHHHhhcCCcceEEeCCCCcccccChHhhh-----cCCCCCeeeccCCcCcc----cccccccCCCCCCEEeCCCCCc
Q 035547 316 MMIIQLKIPNIFTSIDCSSNNFEGPMPEEMG-----RFKSLYAPNMSHNALKG----SIPSSFGNLKQIESLDLLMNNL 385 (482)
Q Consensus 316 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~l~~N~l 385 (482)
.+...+..+++|++|++++|.+......++. ..|+|+.|.|.+|.++. .+...+...+.|+.|++++|++
T Consensus 232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2223444555666666666666554444332 24566666666666652 1233344556666666766666
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.40 E-value=1.1e-13 Score=125.83 Aligned_cols=138 Identities=20% Similarity=0.257 Sum_probs=103.6
Q ss_pred ccceEEccCCCCCc-----hhhhcccCCCCCEEeCCCcccCCC----cChhhhcCCCCcEEEcccCccccc--cCCCCCC
Q 035547 220 TLGVLNLRRNNLGV-----VLKSLANCNMLQVLDLRNNHISDN----FPCWLRNAFSLQVLVFRSNNFSER--ISCPRNN 288 (482)
Q Consensus 220 ~L~~L~l~~n~l~~-----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~--~~~~~~~ 288 (482)
.|+++..++|.+.. +-..|...+.|+++.+++|.|... ....|..+++|++|||.+|.++.. ......+
T Consensus 158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL 237 (382)
T KOG1909|consen 158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL 237 (382)
T ss_pred ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh
Confidence 67777777777733 334677778899999998887642 335577889999999999988733 2224567
Q ss_pred CCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCccccc----ChHhhhcCCCCCeeeccCCcC
Q 035547 289 VSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGP----MPEEMGRFKSLYAPNMSHNAL 361 (482)
Q Consensus 289 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l 361 (482)
..|++|++|++++|.+.......++. ......+.|+.|.+.+|.|+.. +...+...+.|+.|+|++|.+
T Consensus 238 ~s~~~L~El~l~dcll~~~Ga~a~~~----al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 238 SSWPHLRELNLGDCLLENEGAIAFVD----ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccchheeecccccccccccHHHHHH----HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 88999999999999998776666653 3335678999999999999853 233445689999999999999
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.40 E-value=2.1e-14 Score=138.17 Aligned_cols=196 Identities=24% Similarity=0.301 Sum_probs=158.0
Q ss_pred EeCCCCcccCCCCCC--CCCCCCCEEECcCCCCcccccCCCCcccccCCCCCcCCccccEEEccCCCCCCCCC-CCCCCC
Q 035547 45 MDFSSNHFSGPIPSL--HKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEISNMSSSFSKLRLASSKPWVIPI-LKNQSQ 121 (482)
Q Consensus 45 L~L~~n~l~~~~~~~--~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~l~~-~~~l~~ 121 (482)
|.|++-++...+-.. ..+.--...||+.|++.++ |+.......|+.+.++.|.+..+|. +.++..
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~el------------p~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~ 122 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSEL------------PEEACAFVSLESLILYHNCIRTIPEAICNLEA 122 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccC------------chHHHHHHHHHHHHHHhccceecchhhhhhhH
Confidence 344444454433333 3344445667777777665 4433333678888888888888888 999999
Q ss_pred CCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCCCEEeCC
Q 035547 122 LSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLS 201 (482)
Q Consensus 122 L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 201 (482)
|+.|||+.|+++ ..|..++.++ |+.|-+++|+++.+|..+...+++..|+.+.|.+.. +|..++.+.+|+.|.+.
T Consensus 123 lt~l~ls~NqlS-~lp~~lC~lp---Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 123 LTFLDLSSNQLS-HLPDGLCDLP---LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVR 197 (722)
T ss_pred HHHhhhccchhh-cCChhhhcCc---ceeEEEecCccccCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHh
Confidence 999999999998 8888888877 999999999999999988888999999999999876 56778999999999999
Q ss_pred CCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhh
Q 035547 202 NNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWL 262 (482)
Q Consensus 202 ~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 262 (482)
.|++. .+|..+..+ .|..||++.|++..+|..|.+|+.|++|-|.+|.+.+ .|-.+
T Consensus 198 Rn~l~-~lp~El~~L---pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS-PPAqI 253 (722)
T KOG0532|consen 198 RNHLE-DLPEELCSL---PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS-PPAQI 253 (722)
T ss_pred hhhhh-hCCHHHhCC---ceeeeecccCceeecchhhhhhhhheeeeeccCCCCC-ChHHH
Confidence 99998 788888755 7999999999999999999999999999999999987 44433
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.37 E-value=1.3e-12 Score=129.63 Aligned_cols=180 Identities=28% Similarity=0.333 Sum_probs=131.5
Q ss_pred ccccEEEccCCCCCCCCC-CCCCC-CCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEE
Q 035547 98 SSFSKLRLASSKPWVIPI-LKNQS-QLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFS 175 (482)
Q Consensus 98 ~~L~~L~l~~n~l~~l~~-~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~ 175 (482)
+.++.|++.+|.+..++. ....+ +|+.|++++|++. .+|..+..++. |+.|+++.|++++++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~--L~~L~l~~N~l~~l~------------- 179 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPN--LKNLDLSFNDLSDLP------------- 179 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhcccc--ccccccCCchhhhhh-------------
Confidence 567888888888888877 55553 7888888888887 66666677777 888888888888863
Q ss_pred ccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccC
Q 035547 176 TINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHIS 255 (482)
Q Consensus 176 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~ 255 (482)
...+..+.|+.|++++|++. .+|....... .|+++.+++|.+...+..+..+.++..+.+.+|++.
T Consensus 180 -----------~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~--~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~ 245 (394)
T COG4886 180 -----------KLLSNLSNLNNLDLSGNKIS-DLPPEIELLS--ALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE 245 (394)
T ss_pred -----------hhhhhhhhhhheeccCCccc-cCchhhhhhh--hhhhhhhcCCcceecchhhhhcccccccccCCceee
Confidence 33336677777778877777 6666543333 577888888866666677777788888888888776
Q ss_pred CCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHH
Q 035547 256 DNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKW 312 (482)
Q Consensus 256 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 312 (482)
. .+..++.+++++.|++++|.++... .++.+.+++.|++++|.+....+...
T Consensus 246 ~-~~~~~~~l~~l~~L~~s~n~i~~i~----~~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 246 D-LPESIGNLSNLETLDLSNNQISSIS----SLGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred e-ccchhccccccceeccccccccccc----cccccCccCEEeccCccccccchhhh
Confidence 5 3566777778888888888887654 26778888888888888876666543
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.32 E-value=3.5e-12 Score=126.64 Aligned_cols=196 Identities=29% Similarity=0.381 Sum_probs=141.9
Q ss_pred CEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccccCCCCcccccCCCCCcCCc-cccEEEccCCCCCCCCC-CCCCC
Q 035547 43 FHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEISNMSS-SFSKLRLASSKPWVIPI-LKNQS 120 (482)
Q Consensus 43 ~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~~~~~-~L~~L~l~~n~l~~l~~-~~~l~ 120 (482)
..+++..|.+..........+.++.|++.+|.++.++ ....... +|+.|++++|.+..+|. ++.++
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~------------~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~ 163 (394)
T COG4886 96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIP------------PLIGLLKSNLKELDLSDNKIESLPSPLRNLP 163 (394)
T ss_pred ceeeccccccccCchhhhcccceeEEecCCcccccCc------------cccccchhhcccccccccchhhhhhhhhccc
Confidence 3688888887555555566788999999999888773 2222323 79999999999998875 89999
Q ss_pred CCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCCCEEeC
Q 035547 121 QLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLDL 200 (482)
Q Consensus 121 ~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 200 (482)
+|+.|++++|+++ .+|........ |+.|++++|+++.++. .......|+++.+
T Consensus 164 ~L~~L~l~~N~l~-~l~~~~~~~~~--L~~L~ls~N~i~~l~~------------------------~~~~~~~L~~l~~ 216 (394)
T COG4886 164 NLKNLDLSFNDLS-DLPKLLSNLSN--LNNLDLSGNKISDLPP------------------------EIELLSALEELDL 216 (394)
T ss_pred cccccccCCchhh-hhhhhhhhhhh--hhheeccCCccccCch------------------------hhhhhhhhhhhhh
Confidence 9999999999998 66665556666 9999999999998743 2234445677777
Q ss_pred CCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCcccc
Q 035547 201 SNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSE 280 (482)
Q Consensus 201 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 280 (482)
++|++. ..+..+.... ++..+.+.+|++..++..+..+++++.|++++|.++...+ +..+.+++.|++++|.+..
T Consensus 217 ~~N~~~-~~~~~~~~~~--~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 217 SNNSII-ELLSSLSNLK--NLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred cCCcce-ecchhhhhcc--cccccccCCceeeeccchhccccccceecccccccccccc--ccccCccCEEeccCccccc
Confidence 777443 4444455444 6667777777776666777777778888888887776433 6777788888888877765
Q ss_pred cc
Q 035547 281 RI 282 (482)
Q Consensus 281 ~~ 282 (482)
..
T Consensus 292 ~~ 293 (394)
T COG4886 292 AL 293 (394)
T ss_pred cc
Confidence 54
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.29 E-value=1.8e-13 Score=131.85 Aligned_cols=195 Identities=25% Similarity=0.286 Sum_probs=96.1
Q ss_pred CCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCCCEE
Q 035547 119 QSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVL 198 (482)
Q Consensus 119 l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L 198 (482)
+..-...||+.|++. .+|..+..+.. |+.+.|..|.+..+ |.+++.+..|.++
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~--Le~liLy~n~~r~i------------------------p~~i~~L~~lt~l 126 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVS--LESLILYHNCIRTI------------------------PEAICNLEALTFL 126 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHH--HHHHHHHhccceec------------------------chhhhhhhHHHHh
Confidence 334455566666665 66666665555 66666666666554 3444444555555
Q ss_pred eCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCcc
Q 035547 199 DLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNF 278 (482)
Q Consensus 199 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 278 (482)
+++.|+++ .+|..+..+ -|+.|.+++|+++.+|..++....|..||.+.|.+.. .|..++.+.+|+.|++..|.+
T Consensus 127 ~ls~NqlS-~lp~~lC~l---pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l 201 (722)
T KOG0532|consen 127 DLSSNQLS-HLPDGLCDL---PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHL 201 (722)
T ss_pred hhccchhh-cCChhhhcC---cceeEEEecCccccCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhh
Confidence 55555554 444444333 3445555555555555555444455555555555544 344444555555555555544
Q ss_pred ccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcC---CCCCeee
Q 035547 279 SERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRF---KSLYAPN 355 (482)
Q Consensus 279 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~ 355 (482)
.... ..++ .=.|..||+|.|+++ .+|.+| ..+.+|++|-|.+|.++ ..|..+.-. .--++|+
T Consensus 202 ~~lp---~El~-~LpLi~lDfScNkis-~iPv~f---------r~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~ 266 (722)
T KOG0532|consen 202 EDLP---EELC-SLPLIRLDFSCNKIS-YLPVDF---------RKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLS 266 (722)
T ss_pred hhCC---HHHh-CCceeeeecccCcee-ecchhh---------hhhhhheeeeeccCCCC-CChHHHHhccceeeeeeec
Confidence 4332 1222 223444555555544 334333 34555555555555555 344444322 2235666
Q ss_pred ccCCc
Q 035547 356 MSHNA 360 (482)
Q Consensus 356 Ls~N~ 360 (482)
..-++
T Consensus 267 ~qA~q 271 (722)
T KOG0532|consen 267 TQACQ 271 (722)
T ss_pred chhcc
Confidence 66663
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.29 E-value=9.2e-13 Score=117.44 Aligned_cols=179 Identities=22% Similarity=0.203 Sum_probs=95.8
Q ss_pred ccccEEEccCCCCCCCCCCCCCCCCCEEEcccC-cccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEc
Q 035547 98 SSFSKLRLASSKPWVIPILKNQSQLSFFYISNN-QISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFST 176 (482)
Q Consensus 98 ~~L~~L~l~~n~l~~l~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l 176 (482)
+.|+.+...+..+...|.+-..+.+.-...+.- ...|..-..+..... |+++||++|.|+.++..+
T Consensus 237 ptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~--LtelDLS~N~I~~iDESv----------- 303 (490)
T KOG1259|consen 237 PTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQE--LTELDLSGNLITQIDESV----------- 303 (490)
T ss_pred chhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhh--hhhccccccchhhhhhhh-----------
Confidence 677777777776665554322232222211111 111222222223344 888888888888875433
Q ss_pred cCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCC
Q 035547 177 INKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISD 256 (482)
Q Consensus 177 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 256 (482)
.-.|.++.|++++|.+. .+.. +..+. +|++|++++|.++.+..+-..+-+++.|.|++|.+.+
T Consensus 304 -------------KL~Pkir~L~lS~N~i~-~v~n-La~L~--~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~ 366 (490)
T KOG1259|consen 304 -------------KLAPKLRRLILSQNRIR-TVQN-LAELP--QLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIET 366 (490)
T ss_pred -------------hhccceeEEecccccee-eehh-hhhcc--cceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhh
Confidence 33445555555555554 2221 33333 5555555555555554444455566666666666654
Q ss_pred CcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCC
Q 035547 257 NFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLS 309 (482)
Q Consensus 257 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 309 (482)
. ..+..+-+|..||+++|+|..... ...++++|.|+.+.|.+|.+.+.+.
T Consensus 367 L--SGL~KLYSLvnLDl~~N~Ie~lde-V~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 367 L--SGLRKLYSLVNLDLSSNQIEELDE-VNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred h--hhhHhhhhheeccccccchhhHHH-hcccccccHHHHHhhcCCCccccch
Confidence 1 334555666666666666665433 3456677777777777777765443
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.27 E-value=9.3e-13 Score=117.41 Aligned_cols=127 Identities=24% Similarity=0.310 Sum_probs=76.5
Q ss_pred ccccEEEccCCCCCCCCC-CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEc
Q 035547 98 SSFSKLRLASSKPWVIPI-LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFST 176 (482)
Q Consensus 98 ~~L~~L~l~~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l 176 (482)
+.|+++|+++|.|+.+.. ..-.+.++.|++|+|.|. .+.. +..+.+ |+.|||++|.++.+.+
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~--L~~LDLS~N~Ls~~~G------------- 346 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQ--LQLLDLSGNLLAECVG------------- 346 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEecccccee-eehh-hhhccc--ceEeecccchhHhhhh-------------
Confidence 667777777777777766 666777777777777776 3332 556666 7777777777777543
Q ss_pred cCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchh--hhcccCCCCCEEeCCCccc
Q 035547 177 INKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVL--KSLANCNMLQVLDLRNNHI 254 (482)
Q Consensus 177 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~l~~L~~L~Ls~N~l 254 (482)
+-.++.+.++|.+++|.+. .+ ..+..+- +|..|++.+|+|..+. ..++++|.|+.+.|.+|.+
T Consensus 347 -----------wh~KLGNIKtL~La~N~iE-~L-SGL~KLY--SLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 347 -----------WHLKLGNIKTLKLAQNKIE-TL-SGLRKLY--SLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred -----------hHhhhcCEeeeehhhhhHh-hh-hhhHhhh--hheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 2233444455555555443 11 1122222 5555555555554443 2566777778888887777
Q ss_pred CC
Q 035547 255 SD 256 (482)
Q Consensus 255 ~~ 256 (482)
.+
T Consensus 412 ~~ 413 (490)
T KOG1259|consen 412 AG 413 (490)
T ss_pred cc
Confidence 66
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.5e-12 Score=121.87 Aligned_cols=218 Identities=20% Similarity=0.111 Sum_probs=123.5
Q ss_pred CCCCCCCCEEEcccCcccccCC--hhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCC
Q 035547 116 LKNQSQLSFFYISNNQISGEIP--NWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKAT 193 (482)
Q Consensus 116 ~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~ 193 (482)
-+++++|+++.|.+..+. ..+ .....++. ++.|||++|-+... ..+......++
T Consensus 117 Qsn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~--v~~LdLS~NL~~nw---------------------~~v~~i~eqLp 172 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVE-DAGIEEYSKILPN--VRDLDLSRNLFHNW---------------------FPVLKIAEQLP 172 (505)
T ss_pred hhhHHhhhheeecCcccc-ccchhhhhhhCCc--ceeecchhhhHHhH---------------------HHHHHHHHhcc
Confidence 345555666666665554 222 12333333 55555555544443 12344556678
Q ss_pred CCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCC--chhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEE
Q 035547 194 YFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLG--VVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVL 271 (482)
Q Consensus 194 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 271 (482)
+|+.|+++.|++.... ++......+.|+.|.++.|+++ .+-..+..+|+|+.|++.+|...........-+..|+.|
T Consensus 173 ~Le~LNls~Nrl~~~~-~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~L 251 (505)
T KOG3207|consen 173 SLENLNLSSNRLSNFI-SSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQEL 251 (505)
T ss_pred cchhcccccccccCCc-cccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhc
Confidence 8888888888776221 1111122337888888888883 344456677888888888885333333444556778888
Q ss_pred EcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCccccc-ChHhhhcCCC
Q 035547 272 VFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGP-MPEEMGRFKS 350 (482)
Q Consensus 272 ~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~ 350 (482)
+|++|.+..... ....+.++.|+.|+++.+.+...--.+.. ..+.....++|++|+++.|+|... .-..+..+++
T Consensus 252 dLs~N~li~~~~-~~~~~~l~~L~~Lnls~tgi~si~~~d~~---s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~n 327 (505)
T KOG3207|consen 252 DLSNNNLIDFDQ-GYKVGTLPGLNQLNLSSTGIASIAEPDVE---SLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLEN 327 (505)
T ss_pred cccCCccccccc-ccccccccchhhhhccccCcchhcCCCcc---chhhhcccccceeeecccCccccccccchhhccch
Confidence 888888776542 23457788888888888877642111110 001123455666666666666421 1123344555
Q ss_pred CCeeeccCCcCc
Q 035547 351 LYAPNMSHNALK 362 (482)
Q Consensus 351 L~~L~Ls~N~l~ 362 (482)
|+.|....|.++
T Consensus 328 lk~l~~~~n~ln 339 (505)
T KOG3207|consen 328 LKHLRITLNYLN 339 (505)
T ss_pred hhhhhccccccc
Confidence 666666666655
No 33
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.25 E-value=9.6e-13 Score=130.89 Aligned_cols=247 Identities=23% Similarity=0.205 Sum_probs=128.0
Q ss_pred CCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccccCCCCcccccCCCCC
Q 035547 15 LENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEIS 94 (482)
Q Consensus 15 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~ 94 (482)
+..++.++++.|.+.. +-..+..+.+|+.|++.+|.|..+......+++|++|++++|.|+.+. .+..
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-----~l~~------ 138 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-----GLST------ 138 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-----chhh------
Confidence 3444455555555554 222345555566666666655543332455555666666665555442 1100
Q ss_pred cCCccccEEEccCCCCCCCCCCCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEE
Q 035547 95 NMSSSFSKLRLASSKPWVIPILKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSF 174 (482)
Q Consensus 95 ~~~~~L~~L~l~~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L 174 (482)
++.|+.|++.+|.+..++.+..++.|+.+++++|.+...-+.....+.. ++.+.+.+|.+..+
T Consensus 139 --l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~--l~~l~l~~n~i~~i------------- 201 (414)
T KOG0531|consen 139 --LTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELIS--LEELDLGGNSIREI------------- 201 (414)
T ss_pred --ccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccc--hHHHhccCCchhcc-------------
Confidence 0335555555555555555555555555555555554222200223333 55555555555543
Q ss_pred EccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCccc
Q 035547 175 STINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHI 254 (482)
Q Consensus 175 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l 254 (482)
..+..+..+..+++..|.+...-+. .......|+.+++++|.+..++..+..+..++.|++.+|++
T Consensus 202 ------------~~~~~~~~l~~~~l~~n~i~~~~~l--~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 202 ------------EGLDLLKKLVLLSLLDNKISKLEGL--NELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred ------------cchHHHHHHHHhhcccccceeccCc--ccchhHHHHHHhcccCccccccccccccccccccchhhccc
Confidence 2233334444457777777622221 11110027788888888877766777777888888888877
Q ss_pred CCCcChhhhcCCCCcEEEcccCccccccCCCC--CCCCCCCCCEEecCCCCCcc
Q 035547 255 SDNFPCWLRNAFSLQVLVFRSNNFSERISCPR--NNVSWPLLKIVDLASNKFSG 306 (482)
Q Consensus 255 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~~~l~~L~~L~Ls~n~l~~ 306 (482)
... ..+.....+..+.+..|.+........ .....+.++...+..|.+..
T Consensus 268 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 268 SNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred ccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 653 223445556666666666552211011 13445566666666665554
No 34
>PLN03150 hypothetical protein; Provisional
Probab=99.24 E-value=2.5e-11 Score=126.19 Aligned_cols=113 Identities=24% Similarity=0.402 Sum_probs=100.4
Q ss_pred CCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhh
Q 035547 267 SLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMG 346 (482)
Q Consensus 267 ~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 346 (482)
.++.|+|++|.+.+.. +..++.+++|+.|+|++|.+.+.+|..+ ..+++|+.|+|++|++++.+|+.++
T Consensus 419 ~v~~L~L~~n~L~g~i--p~~i~~L~~L~~L~Ls~N~l~g~iP~~~---------~~l~~L~~LdLs~N~lsg~iP~~l~ 487 (623)
T PLN03150 419 FIDGLGLDNQGLRGFI--PNDISKLRHLQSINLSGNSIRGNIPPSL---------GSITSLEVLDLSYNSFNGSIPESLG 487 (623)
T ss_pred EEEEEECCCCCccccC--CHHHhCCCCCCEEECCCCcccCcCChHH---------hCCCCCCEEECCCCCCCCCCchHHh
Confidence 3788999999999877 5678999999999999999999999655 6889999999999999999999999
Q ss_pred cCCCCCeeeccCCcCcccccccccCC-CCCCEEeCCCCCccccCC
Q 035547 347 RFKSLYAPNMSHNALKGSIPSSFGNL-KQIESLDLLMNNLMGKIP 390 (482)
Q Consensus 347 ~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~p 390 (482)
.+++|+.|+|++|++++.+|..+..+ .++..+++.+|...+..|
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99999999999999999999988764 467889999998765544
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.23 E-value=1.3e-11 Score=105.53 Aligned_cols=112 Identities=29% Similarity=0.312 Sum_probs=41.5
Q ss_pred hcCCCCCEEeCCCCcccccCChhhh-hcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCC
Q 035547 190 CKATYFQVLDLSNNNLSGSIPACLI-TKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSL 268 (482)
Q Consensus 190 ~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 268 (482)
.+...++.|++++|.|. .+. .+. .+. +|+.|++++|.|+.+. .+..++.|++|++++|+|++..+.....+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~--~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS-TIE-NLGATLD--KLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-T--T--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred ccccccccccccccccc-ccc-chhhhhc--CCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 44456788999999887 343 233 234 8899999999998885 67888999999999999987433323468899
Q ss_pred cEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCccc
Q 035547 269 QVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGR 307 (482)
Q Consensus 269 ~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 307 (482)
++|++++|+|..... -..+..+++|++|+|.+|.++..
T Consensus 91 ~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 91 QELYLSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp -EEE-TTS---SCCC-CGGGGG-TT--EEE-TT-GGGGS
T ss_pred CEEECcCCcCCChHH-hHHHHcCCCcceeeccCCcccch
Confidence 999999999986543 34566788888888888887643
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.23 E-value=1.5e-11 Score=105.20 Aligned_cols=135 Identities=28% Similarity=0.266 Sum_probs=37.9
Q ss_pred CCCCCCCCCCCCCCCCEEEcccCcccccCChhhh-hcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccCh
Q 035547 108 SKPWVIPILKNQSQLSFFYISNNQISGEIPNWIW-EVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIP 186 (482)
Q Consensus 108 n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~ 186 (482)
+.|..++.+.+..++++|+|++|.|+ .+. .+. .+.. |+.|++++|.|+.++
T Consensus 7 ~~i~~~~~~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~--L~~L~Ls~N~I~~l~------------------------ 58 (175)
T PF14580_consen 7 NMIEQIAQYNNPVKLRELNLRGNQIS-TIE-NLGATLDK--LEVLDLSNNQITKLE------------------------ 58 (175)
T ss_dssp -------------------------------S--TT-TT----EEE-TTS--S--T------------------------
T ss_pred cccccccccccccccccccccccccc-ccc-chhhhhcC--CCEEECCCCCCcccc------------------------
Confidence 33444455555556666777777665 222 232 2344 666777777666653
Q ss_pred hhhhcCCCCCEEeCCCCcccccCChhhh-hcCcCccceEEccCCCCCchh--hhcccCCCCCEEeCCCcccCCCcC---h
Q 035547 187 EYICKATYFQVLDLSNNNLSGSIPACLI-TKSSTTLGVLNLRRNNLGVVL--KSLANCNMLQVLDLRNNHISDNFP---C 260 (482)
Q Consensus 187 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~---~ 260 (482)
.+..++.|+.|++++|+++ .+...+. ..+ +|++|++++|+|..+. ..+..+++|++|++.+|.++...- .
T Consensus 59 -~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp--~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~ 134 (175)
T PF14580_consen 59 -GLPGLPRLKTLDLSNNRIS-SISEGLDKNLP--NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLF 134 (175)
T ss_dssp -T----TT--EEE--SS----S-CHHHHHH-T--T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHH
T ss_pred -CccChhhhhhcccCCCCCC-ccccchHHhCC--cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHH
Confidence 2344555555555555555 3333222 222 5666666666553332 245567777788887777765311 2
Q ss_pred hhhcCCCCcEEEcc
Q 035547 261 WLRNAFSLQVLVFR 274 (482)
Q Consensus 261 ~~~~l~~L~~L~L~ 274 (482)
.+..+|+|+.||-.
T Consensus 135 vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 135 VIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHHH-TT-SEETTE
T ss_pred HHHHcChhheeCCE
Confidence 35567788877654
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=3.7e-12 Score=119.26 Aligned_cols=203 Identities=18% Similarity=0.076 Sum_probs=123.5
Q ss_pred ccccEEEccCCCCCCCC--C-CCCCCCCCEEEcccCcccccCC--hhhhhcCCCCccEEeCCCCcccCCCCCCC--CCCC
Q 035547 98 SSFSKLRLASSKPWVIP--I-LKNQSQLSFFYISNNQISGEIP--NWIWEVGGVNLYFLNLSQNLLVSLQEPYH--ISGR 170 (482)
Q Consensus 98 ~~L~~L~l~~n~l~~l~--~-~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~~~L~~L~L~~n~i~~~~~~~~--~~~~ 170 (482)
++|+++.|.++.+...+ . ...+++++.|||+.|-+....+ .-...++. |+.|+++.|++....+..- .+++
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~--Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPS--LENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhccc--chhcccccccccCCccccchhhhhh
Confidence 66777777777776555 2 6777888888888887753221 22334555 8888888888776554333 5667
Q ss_pred ccEEEccCCccccc-ChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchh--hhcccCCCCCEE
Q 035547 171 TYSFSTINKSLIGF-IPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVL--KSLANCNMLQVL 247 (482)
Q Consensus 171 l~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~l~~L~~L 247 (482)
++.|.+++|.++.. +......+|+|+.|+++.|...........-.. .|++|+|++|.+-..+ ...+.++.|+.|
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~--~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQ--TLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhh--HHhhccccCCcccccccccccccccchhhh
Confidence 77777777776532 334455677777788777742212222222222 6777777777775555 355667777777
Q ss_pred eCCCcccCCCc-Chh-----hhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCc
Q 035547 248 DLRNNHISDNF-PCW-----LRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFS 305 (482)
Q Consensus 248 ~Ls~N~l~~~~-~~~-----~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 305 (482)
.++.+.+.++. |+. ....++|++|++..|+|..+.. -..+..+++|+.|.+..|.+.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s-l~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRS-LNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccc-cchhhccchhhhhhccccccc
Confidence 77777776531 221 2345677777777777755432 233444555666665566554
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.02 E-value=3.4e-11 Score=119.83 Aligned_cols=60 Identities=28% Similarity=0.207 Sum_probs=36.1
Q ss_pred ccccEEEccCCCCCCCCC-CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCC
Q 035547 98 SSFSKLRLASSKPWVIPI-LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSL 161 (482)
Q Consensus 98 ~~L~~L~l~~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~ 161 (482)
+++..+++..|.+..+.. +..+++|++|++++|.|+...+ +..+.. |+.|++++|.|+.+
T Consensus 95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~--L~~L~l~~N~i~~~ 155 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTL--LKELNLSGNLISDI 155 (414)
T ss_pred cceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccc--hhhheeccCcchhc
Confidence 555666666666665555 6666667777777776653222 334444 66667777766665
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.96 E-value=4e-10 Score=79.28 Aligned_cols=61 Identities=31% Similarity=0.453 Sum_probs=52.8
Q ss_pred CcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCc
Q 035547 325 NIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNL 385 (482)
Q Consensus 325 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 385 (482)
++|++|++++|+++...++.|.++++|+.|++++|+++...|+.|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4678888888888877778889999999999999999877788899999999999999875
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=5.3e-10 Score=78.63 Aligned_cols=60 Identities=40% Similarity=0.570 Sum_probs=54.3
Q ss_pred CCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCC
Q 035547 16 ENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNL 75 (482)
Q Consensus 16 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i 75 (482)
++|++|++++|+++.+.+.+|.++++|++|++++|.++.++++. ..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 57899999999999877789999999999999999999888877 8999999999999975
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.80 E-value=1.1e-10 Score=115.89 Aligned_cols=128 Identities=22% Similarity=0.135 Sum_probs=87.3
Q ss_pred CCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEc
Q 035547 194 YFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVF 273 (482)
Q Consensus 194 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 273 (482)
.|.+.++++|.+. .+..++..++ .++.|+|++|+++.+. .+..++.|++|||++|.+....--...++ +|+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~--ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLP--ALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHH--HhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeee
Confidence 4667778888776 6666666666 7888888888887775 77778888888888888876322222333 4888888
Q ss_pred ccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCccc
Q 035547 274 RSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFE 338 (482)
Q Consensus 274 ~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 338 (482)
++|.++... .+.++.+|+.||+++|-+.+.-.-.+ +..+..|+.|+|.+|.+.
T Consensus 240 rnN~l~tL~----gie~LksL~~LDlsyNll~~hseL~p--------LwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTLR----GIENLKSLYGLDLSYNLLSEHSELEP--------LWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhhh----hHHhhhhhhccchhHhhhhcchhhhH--------HHHHHHHHHHhhcCCccc
Confidence 888877643 45677788888888887765433222 234556667777777765
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.73 E-value=3.6e-10 Score=112.27 Aligned_cols=127 Identities=28% Similarity=0.290 Sum_probs=89.1
Q ss_pred CCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCCCEEeC
Q 035547 121 QLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLDL 200 (482)
Q Consensus 121 ~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 200 (482)
.|.+.++++|.+. ....++.-++. ++.|||++|+++++ +.+..++.|+.||+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~a--le~LnLshNk~~~v-------------------------~~Lr~l~~LkhLDl 216 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPA--LESLNLSHNKFTKV-------------------------DNLRRLPKLKHLDL 216 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHH--hhhhccchhhhhhh-------------------------HHHHhccccccccc
Confidence 4555666666665 44555555555 66666666666664 47888889999999
Q ss_pred CCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCc-ChhhhcCCCCcEEEcccCccc
Q 035547 201 SNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNF-PCWLRNAFSLQVLVFRSNNFS 279 (482)
Q Consensus 201 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~i~ 279 (482)
++|.+. .+|..-.... .|+.|.+++|.++++- ++.++++|+.||+++|-+.+-- -..+..+..|+.|+|.||.+.
T Consensus 217 syN~L~-~vp~l~~~gc--~L~~L~lrnN~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 217 SYNCLR-HVPQLSMVGC--KLQLLNLRNNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccchhc-cccccchhhh--hheeeeecccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 999887 6664333323 7889999999887774 7788889999999999886521 123455677888888888875
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.70 E-value=1.5e-08 Score=108.01 Aligned_cols=203 Identities=18% Similarity=0.198 Sum_probs=105.6
Q ss_pred CCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCc--ccCCCCCC-CCCCCCCEEECcCCC-CcccccCCCCcccccCC
Q 035547 16 ENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNH--FSGPIPSL-HKSRNLNYLDLSSNN-LNEIHLLSNNQFENQFP 91 (482)
Q Consensus 16 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~-~~l~~L~~L~Ls~N~-i~~l~~l~~n~l~~~~p 91 (482)
...++..+-+|.+..+ +.+. ..++|++|-+.+|. +..+..+. ..++.|+.|||++|. +.. +|
T Consensus 523 ~~~rr~s~~~~~~~~~-~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~------------LP 588 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHI-AGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK------------LP 588 (889)
T ss_pred hheeEEEEeccchhhc-cCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc------------CC
Confidence 5567777777777653 2222 23478888888885 55555554 668888888888752 111 23
Q ss_pred CCCcCCccccEEEccCCCCCCCCC-CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCC
Q 035547 92 EISNMSSSFSKLRLASSKPWVIPI-LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGR 170 (482)
Q Consensus 92 ~~~~~~~~L~~L~l~~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~ 170 (482)
+...-+.+|+.|++++..+..+|. +++++.|.+|++..+.-...+|.....+.. |++|.+......
T Consensus 589 ~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~--Lr~L~l~~s~~~----------- 655 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQS--LRVLRLPRSALS----------- 655 (889)
T ss_pred hHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhccc--ccEEEeeccccc-----------
Confidence 333322455555555555555555 666666666666655544344444444555 666555443311
Q ss_pred ccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcC--cCccceEEccCCCCCchhhhcccCCCCCEEe
Q 035547 171 TYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKS--STTLGVLNLRRNNLGVVLKSLANCNMLQVLD 248 (482)
Q Consensus 171 l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~ 248 (482)
.....-..+..+.+|+.+........ +-..+.... ....+.+.+.++.....+..+..+.+|+.|.
T Consensus 656 ----------~~~~~l~el~~Le~L~~ls~~~~s~~--~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ 723 (889)
T KOG4658|consen 656 ----------NDKLLLKELENLEHLENLSITISSVL--LLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELS 723 (889)
T ss_pred ----------cchhhHHhhhcccchhhheeecchhH--hHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEE
Confidence 11112233344555555544332210 000010000 0022334434455555566677778888888
Q ss_pred CCCcccCCC
Q 035547 249 LRNNHISDN 257 (482)
Q Consensus 249 Ls~N~l~~~ 257 (482)
+.++.+.+.
T Consensus 724 i~~~~~~e~ 732 (889)
T KOG4658|consen 724 ILDCGISEI 732 (889)
T ss_pred EEcCCCchh
Confidence 887777653
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.66 E-value=3e-08 Score=105.85 Aligned_cols=129 Identities=18% Similarity=0.191 Sum_probs=83.7
Q ss_pred CCCCCCCEEECcCCCCcccccCCCCcccccCCCCCcCCccccEEEccCCC--CCCCCC--CCCCCCCCEEEcccCccccc
Q 035547 60 HKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEISNMSSSFSKLRLASSK--PWVIPI--LKNQSQLSFFYISNNQISGE 135 (482)
Q Consensus 60 ~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~--l~~l~~--~~~l~~L~~L~Ls~n~l~~~ 135 (482)
......++..+-+|.+..+. ..... +.|+.|-+..|. +..++. |..++.|++|||++|.=.+.
T Consensus 520 ~~~~~~rr~s~~~~~~~~~~------------~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~ 586 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEHIA------------GSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK 586 (889)
T ss_pred cchhheeEEEEeccchhhcc------------CCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc
Confidence 44456666666666665442 11111 457777777775 556666 77888888888888776668
Q ss_pred CChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCCCEEeCCCC
Q 035547 136 IPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNN 203 (482)
Q Consensus 136 ~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 203 (482)
+|+.++.+-+ |++|++++..++.+|..+..+..|.+|++........+|.....+++|++|.+..-
T Consensus 587 LP~~I~~Li~--LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 587 LPSSIGELVH--LRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred CChHHhhhhh--hhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 8888888887 88888888888887655555555555555555444444455555666666655443
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.63 E-value=1.8e-08 Score=89.22 Aligned_cols=195 Identities=20% Similarity=0.145 Sum_probs=118.5
Q ss_pred hhhhcCCCCCEEeCCCCcccccCChhhhhc--CcCccceEEccCCCCCchh-----hh---------cccCCCCCEEeCC
Q 035547 187 EYICKATYFQVLDLSNNNLSGSIPACLITK--SSTTLGVLNLRRNNLGVVL-----KS---------LANCNMLQVLDLR 250 (482)
Q Consensus 187 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~-----~~---------~~~l~~L~~L~Ls 250 (482)
.++.+||.|+..++|+|.+....|..+... ..+.|++|.+++|.++.+. .+ ...-|.|++.+..
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 456677888888888888876666544321 1237888888888774332 22 2334678888888
Q ss_pred CcccCCCcCh----hhhcCCCCcEEEcccCcccccc--C-CCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhc
Q 035547 251 NNHISDNFPC----WLRNAFSLQVLVFRSNNFSERI--S-CPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKI 323 (482)
Q Consensus 251 ~N~l~~~~~~----~~~~l~~L~~L~L~~N~i~~~~--~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~ 323 (482)
.|++..-... .+..-.+|+++.+..|.|.... . .-..+..+.+|++|||++|.++-... .....++..
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS-----~~La~al~~ 240 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS-----RYLADALCE 240 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH-----HHHHHHhcc
Confidence 8888652111 2222357888888888876321 0 00123456788888888887763222 233344555
Q ss_pred CCcceEEeCCCCcccccChHhhh------cCCCCCeeeccCCcCcccc------cccc-cCCCCCCEEeCCCCCcc
Q 035547 324 PNIFTSIDCSSNNFEGPMPEEMG------RFKSLYAPNMSHNALKGSI------PSSF-GNLKQIESLDLLMNNLM 386 (482)
Q Consensus 324 ~~~L~~L~Ls~n~l~~~~~~~~~------~l~~L~~L~Ls~N~l~~~~------~~~~-~~l~~L~~L~l~~N~l~ 386 (482)
.+.|++|.+..|-++....+++- ..|+|..|-..+|.+.+.+ +... ..+|-|..+.+.+|++.
T Consensus 241 W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 241 WNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred cchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 66678888888877765554432 2477777878887665321 1111 24566667777777776
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.61 E-value=2.6e-09 Score=94.42 Aligned_cols=206 Identities=18% Similarity=0.196 Sum_probs=109.1
Q ss_pred CCCCCCCCCCEEEcccCcccccCChhhhhc--CCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCccccc-----Ch
Q 035547 114 PILKNQSQLSFFYISNNQISGEIPNWIWEV--GGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGF-----IP 186 (482)
Q Consensus 114 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~-----~~ 186 (482)
+++-++++|+..+||+|.+....|..+..+ ..+.|++|.+++|.+..+.+ -+|... .-
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG---------------~rigkal~~la~n 150 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAG---------------GRIGKALFHLAYN 150 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccch---------------hHHHHHHHHHHHH
Confidence 336678889999999998887777665543 12338888888877665422 111000 00
Q ss_pred hhhhcCCCCCEEeCCCCcccccCChhhh-----hcCcCccceEEccCCCCCc------hhhhcccCCCCCEEeCCCcccC
Q 035547 187 EYICKATYFQVLDLSNNNLSGSIPACLI-----TKSSTTLGVLNLRRNNLGV------VLKSLANCNMLQVLDLRNNHIS 255 (482)
Q Consensus 187 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~~~~L~~L~l~~n~l~~------~~~~~~~l~~L~~L~Ls~N~l~ 255 (482)
.-...-|.|+++++..|++. ..+.... ... .|+++.+..|.|.. +...+..+.+|++||+.+|.++
T Consensus 151 KKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~--~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 151 KKAADKPKLEVVICGRNRLE-NGSKELSAALLESHE--NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred hhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhc--CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 11223466777777777775 3332211 111 55666666665511 1123344555666666665554
Q ss_pred CCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCC
Q 035547 256 DNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSN 335 (482)
Q Consensus 256 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 335 (482)
-.-...+ ......|+.|+.|.+.+|-++.....+++.... -...++|+.|.+.+|
T Consensus 228 ~~gS~~L----------------------a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~---e~~~p~l~~L~~~Yn 282 (388)
T COG5238 228 LEGSRYL----------------------ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN---EKFVPNLMPLPGDYN 282 (388)
T ss_pred hhhHHHH----------------------HHHhcccchhhhccccchhhccccHHHHHHHhh---hhcCCCccccccchh
Confidence 3211111 223344555566666666555444433332111 123456666666666
Q ss_pred cccccCh-----Hhh--hcCCCCCeeeccCCcCc
Q 035547 336 NFEGPMP-----EEM--GRFKSLYAPNMSHNALK 362 (482)
Q Consensus 336 ~l~~~~~-----~~~--~~l~~L~~L~Ls~N~l~ 362 (482)
.+.+.+- .++ .++|-|..|.+.+|++.
T Consensus 283 e~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 283 ERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 6654221 111 45778888889999887
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=1.5e-08 Score=90.80 Aligned_cols=186 Identities=16% Similarity=0.127 Sum_probs=96.2
Q ss_pred hhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCC--CchhhhcccCCCCCEEeCCCcccCCC--cChh
Q 035547 186 PEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNL--GVVLKSLANCNMLQVLDLRNNHISDN--FPCW 261 (482)
Q Consensus 186 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~ 261 (482)
...+..+|.|++|+++.|.+...+.... .+..+|+.|.+.+..+ +...+.+..+|.+++|++|.|.+... ..+.
T Consensus 90 ~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c 167 (418)
T KOG2982|consen 90 GAILEQLPALTTLNLSCNSLSSDIKSLP--LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNC 167 (418)
T ss_pred HHHHhcCccceEeeccCCcCCCccccCc--ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccccc
Confidence 3445567777777777777763332221 1222777777777766 34444566667777777777743321 0011
Q ss_pred hh-cCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCccccc
Q 035547 262 LR-NAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGP 340 (482)
Q Consensus 262 ~~-~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 340 (482)
.. .-+.+++|....|...-+........-++++..+.+..|.+.......- ....+.+.-|+|+.|+|.+-
T Consensus 168 ~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~--------se~~p~~~~LnL~~~~idsw 239 (418)
T KOG2982|consen 168 IEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKG--------SEPFPSLSCLNLGANNIDSW 239 (418)
T ss_pred ccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhccc--------CCCCCcchhhhhcccccccH
Confidence 11 1123444444444332111111111234566666666665544333211 23445555666676666532
Q ss_pred -ChHhhhcCCCCCeeeccCCcCcccccc------cccCCCCCCEEeCC
Q 035547 341 -MPEEMGRFKSLYAPNMSHNALKGSIPS------SFGNLKQIESLDLL 381 (482)
Q Consensus 341 -~~~~~~~l~~L~~L~Ls~N~l~~~~~~------~~~~l~~L~~L~l~ 381 (482)
--+++..++.|+.|.+++|.+...+.. .++.+++++.|+=+
T Consensus 240 asvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 240 ASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred HHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 235666777788888888777532221 24566677766554
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=6.1e-09 Score=93.33 Aligned_cols=179 Identities=21% Similarity=0.113 Sum_probs=112.1
Q ss_pred ccccEEEccCCCCC--CCCC-CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCc-ccCCCCCCCCCCCccE
Q 035547 98 SSFSKLRLASSKPW--VIPI-LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNL-LVSLQEPYHISGRTYS 173 (482)
Q Consensus 98 ~~L~~L~l~~n~l~--~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~-i~~~~~~~~~~~~l~~ 173 (482)
+.++.+||+...++ .+-. ++.+.+|+.|.+.++++.+.+-..+.+-.. |+.|+++.+. ++..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~--L~~lnlsm~sG~t~n------------ 250 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSN--LVRLNLSMCSGFTEN------------ 250 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccc--ceeeccccccccchh------------
Confidence 34667777766665 3333 666777777777777777666666665555 7777776642 2221
Q ss_pred EEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCC----CchhhhcccCCCCCEEeC
Q 035547 174 FSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNL----GVVLKSLANCNMLQVLDL 249 (482)
Q Consensus 174 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l----~~~~~~~~~l~~L~~L~L 249 (482)
.+.-.+..+..|+.|+++++.+....-......-.++|+.|+++++.- ..+..-...+++|.+|||
T Consensus 251 ----------~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDL 320 (419)
T KOG2120|consen 251 ----------ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDL 320 (419)
T ss_pred ----------HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecc
Confidence 122346778889999999987765443333333334888888887632 444444567888999999
Q ss_pred CCccc-CCCcChhhhcCCCCcEEEcccCccccccC-CCCCCCCCCCCCEEecCCC
Q 035547 250 RNNHI-SDNFPCWLRNAFSLQVLVFRSNNFSERIS-CPRNNVSWPLLKIVDLASN 302 (482)
Q Consensus 250 s~N~l-~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~~~l~~L~~L~Ls~n 302 (482)
|+|.. +......|.+++.|++|.++.+..- +| .-..+...|+|.+||.-++
T Consensus 321 SD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 321 SDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 88754 3334455667788888888776432 11 0123566777888877654
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.32 E-value=4.9e-08 Score=77.56 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=21.9
Q ss_pred hhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhh
Q 035547 186 PEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLK 236 (482)
Q Consensus 186 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 236 (482)
|..+..++.|+.|+++.|.+. ..|..+..+. ++-.|+..+|.+..+|.
T Consensus 93 PeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~--~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 93 PEELAAMPALRSLNLRFNPLN-AEPRVIAPLI--KLDMLDSPENARAEIDV 140 (177)
T ss_pred hHHHhhhHHhhhcccccCccc-cchHHHHHHH--hHHHhcCCCCccccCcH
Confidence 333455555555555555554 3444333333 44444444444444443
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=2.2e-07 Score=83.52 Aligned_cols=59 Identities=24% Similarity=0.232 Sum_probs=31.1
Q ss_pred ccccEEEccCCCCC---CCCC-CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcc
Q 035547 98 SSFSKLRLASSKPW---VIPI-LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLL 158 (482)
Q Consensus 98 ~~L~~L~l~~n~l~---~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i 158 (482)
+.+++++|.+|.+. +|.+ +.+++.|++|+++.|++...+...=..+. +|++|-|.+..+
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~--nl~~lVLNgT~L 133 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK--NLRVLVLNGTGL 133 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccccc--ceEEEEEcCCCC
Confidence 55666666666665 3333 56666666666666666533221101222 266666665543
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.7e-07 Score=84.20 Aligned_cols=179 Identities=18% Similarity=0.152 Sum_probs=92.4
Q ss_pred CCCEEeCCCCccccc-CChhhhhcCcCccceEEccCCCC-CchhhhcccCCCCCEEeCCCcc-cCCC-cChhhhcCCCCc
Q 035547 194 YFQVLDLSNNNLSGS-IPACLITKSSTTLGVLNLRRNNL-GVVLKSLANCNMLQVLDLRNNH-ISDN-FPCWLRNAFSLQ 269 (482)
Q Consensus 194 ~L~~L~l~~n~l~~~-~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~ 269 (482)
.||.+|+++..++.. +...+.... +|+.|.+.++.+ +.+...++.-.+|+.|+++.+. +++. ..-.+..+..|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~--kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCS--KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHH--hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 355566655544421 111112222 555555555555 3344445555556666665532 2221 112344555666
Q ss_pred EEEcccCccccccCCCCCCCC-CCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCc-ccccChHhhhc
Q 035547 270 VLVFRSNNFSERISCPRNNVS-WPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNN-FEGPMPEEMGR 347 (482)
Q Consensus 270 ~L~L~~N~i~~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~ 347 (482)
.|+++.+.+.... +...+.. -++|+.|+|+++.- .++..........+++|..||||+|. ++...-.+|..
T Consensus 264 ~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rr------nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k 336 (419)
T KOG2120|consen 264 ELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRR------NLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK 336 (419)
T ss_pred hcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHh------hhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence 6666655544321 0111111 23555556655421 12222233445677888888888754 33333455667
Q ss_pred CCCCCeeeccCCcCccccccc---ccCCCCCCEEeCCCC
Q 035547 348 FKSLYAPNMSHNALKGSIPSS---FGNLKQIESLDLLMN 383 (482)
Q Consensus 348 l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~L~l~~N 383 (482)
++.|++|.+++|.. ++|+. +...|+|.+||+.+.
T Consensus 337 f~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 88888888888864 34443 556778888888765
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.22 E-value=6e-08 Score=77.09 Aligned_cols=86 Identities=22% Similarity=0.295 Sum_probs=58.6
Q ss_pred CCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccc
Q 035547 290 SWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSF 369 (482)
Q Consensus 290 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 369 (482)
....|+..+|++|.+.. .|..|. ..++..+.|+|++|.|+ .+|..+..++.|+.|+++.|.+. ..|..+
T Consensus 51 ~~~el~~i~ls~N~fk~-fp~kft--------~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi 119 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKK-FPKKFT--------IKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVI 119 (177)
T ss_pred CCceEEEEecccchhhh-CCHHHh--------hccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHH
Confidence 33445555555555552 233332 34556677777777777 56777888888888888888887 666777
Q ss_pred cCCCCCCEEeCCCCCcc
Q 035547 370 GNLKQIESLDLLMNNLM 386 (482)
Q Consensus 370 ~~l~~L~~L~l~~N~l~ 386 (482)
..+.++..||..+|.+.
T Consensus 120 ~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 120 APLIKLDMLDSPENARA 136 (177)
T ss_pred HHHHhHHHhcCCCCccc
Confidence 77888888888888665
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.18 E-value=2.6e-06 Score=72.62 Aligned_cols=101 Identities=18% Similarity=0.224 Sum_probs=52.7
Q ss_pred CCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCcccccCCCCcccccCCCCCc
Q 035547 17 NLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEISN 95 (482)
Q Consensus 17 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~~ 95 (482)
....+||++|.+... ..|..++.|.+|.+++|.|+.+.|.. ..+++|+.|.|.+|+|.++.++.. +..
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p--La~------- 111 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP--LAS------- 111 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch--hcc-------
Confidence 344556666655542 23445566666666666666665555 555566666666666655532211 100
Q ss_pred CCccccEEEccCCCCCCCCC-----CCCCCCCCEEEccc
Q 035547 96 MSSSFSKLRLASSKPWVIPI-----LKNQSQLSFFYISN 129 (482)
Q Consensus 96 ~~~~L~~L~l~~n~l~~l~~-----~~~l~~L~~L~Ls~ 129 (482)
+++|+.|.+-+|.++.-+. +..+++|++||++.
T Consensus 112 -~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 112 -CPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred -CCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 1555555555555553322 45555555555544
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.16 E-value=3.6e-06 Score=71.77 Aligned_cols=104 Identities=15% Similarity=0.130 Sum_probs=65.0
Q ss_pred ccccEEEccCCCCCCCCCCCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCC--CCCCccEEE
Q 035547 98 SSFSKLRLASSKPWVIPILKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYH--ISGRTYSFS 175 (482)
Q Consensus 98 ~~L~~L~l~~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~--~~~~l~~L~ 175 (482)
.+...++|+.|.+..++.|..++.|.+|.|++|.|+.+.|.--..++. |+.|.|.+|.|..+..--+ .++.|+.|.
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~--l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPN--LKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccc--cceEEecCcchhhhhhcchhccCCccceee
Confidence 455666667776666666777888888888888888655554444555 8888888888877654333 455566665
Q ss_pred ccCCcccccC---hhhhhcCCCCCEEeCCCC
Q 035547 176 TINKSLIGFI---PEYICKATYFQVLDLSNN 203 (482)
Q Consensus 176 l~~n~~~~~~---~~~~~~l~~L~~L~l~~n 203 (482)
+-+|.+...- ...+..+++|++||+++-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 5555544321 112345566666666554
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.12 E-value=2e-06 Score=55.38 Aligned_cols=38 Identities=32% Similarity=0.547 Sum_probs=23.8
Q ss_pred CCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccC
Q 035547 16 ENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSG 54 (482)
Q Consensus 16 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 54 (482)
++|++|++++|+|+. +|..+++|++|++|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCC
Confidence 356777777777775 44456777777777777776664
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.06 E-value=5e-06 Score=53.46 Aligned_cols=37 Identities=38% Similarity=0.469 Sum_probs=21.0
Q ss_pred ccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCC
Q 035547 220 TLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISD 256 (482)
Q Consensus 220 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 256 (482)
+|++|++++|+++.+|..+..+++|++|++++|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 5566666666666665555666666666666665554
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.95 E-value=2.4e-05 Score=75.53 Aligned_cols=17 Identities=12% Similarity=0.270 Sum_probs=8.0
Q ss_pred CCCCCEEECcCCCCccc
Q 035547 62 SRNLNYLDLSSNNLNEI 78 (482)
Q Consensus 62 l~~L~~L~Ls~N~i~~l 78 (482)
+.++++|++++|.++.+
T Consensus 51 ~~~l~~L~Is~c~L~sL 67 (426)
T PRK15386 51 ARASGRLYIKDCDIESL 67 (426)
T ss_pred hcCCCEEEeCCCCCccc
Confidence 34445555555444433
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.88 E-value=6.7e-05 Score=72.53 Aligned_cols=32 Identities=22% Similarity=0.136 Sum_probs=14.0
Q ss_pred CCccEEEccCCcccccChhhhhcCCCCCEEeCCCC
Q 035547 169 GRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNN 203 (482)
Q Consensus 169 ~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 203 (482)
++|+.|++++|.... .|+.+. .+|+.|+++.+
T Consensus 156 sSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence 345555555444321 122111 35666666554
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.80 E-value=2e-05 Score=82.50 Aligned_cols=145 Identities=19% Similarity=0.211 Sum_probs=89.9
Q ss_pred CCCCEEeCCCCcccc-cCChhhhhcCcCccceEEccCCCC--CchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCc
Q 035547 193 TYFQVLDLSNNNLSG-SIPACLITKSSTTLGVLNLRRNNL--GVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQ 269 (482)
Q Consensus 193 ~~L~~L~l~~n~l~~-~~~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 269 (482)
.+|+.|++++...-. .-|..++ ..+|+|+.|.+++-.+ +++.....++++|..||+|+.+++.. ..++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig-~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIG-TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHh-hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence 567788887754321 1122222 2245888888877665 34455667778888888888888764 5677888888
Q ss_pred EEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHh
Q 035547 270 VLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEE 344 (482)
Q Consensus 270 ~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 344 (482)
+|.+.+-.+..... -..+.++++|++||+|........ ... ..-.+-...+|.|+.||.|++.+....-+.
T Consensus 199 ~L~mrnLe~e~~~~-l~~LF~L~~L~vLDIS~~~~~~~~-~ii--~qYlec~~~LpeLrfLDcSgTdi~~~~le~ 269 (699)
T KOG3665|consen 199 VLSMRNLEFESYQD-LIDLFNLKKLRVLDISRDKNNDDT-KII--EQYLECGMVLPELRFLDCSGTDINEEILEE 269 (699)
T ss_pred HHhccCCCCCchhh-HHHHhcccCCCeeeccccccccch-HHH--HHHHHhcccCccccEEecCCcchhHHHHHH
Confidence 88888776653211 224567888888888886654322 100 111133355778888888877776544433
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.66 E-value=2.2e-05 Score=69.86 Aligned_cols=71 Identities=27% Similarity=0.430 Sum_probs=47.1
Q ss_pred ecCCcCCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCC--cccCCCCCC-CCCCCCCEEECcCCCCccc
Q 035547 6 GTLPDSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSN--HFSGPIPSL-HKSRNLNYLDLSSNNLNEI 78 (482)
Q Consensus 6 g~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l 78 (482)
|.+..-.-.+..|+.|++.+..++.. ..|-.+++|++|+++.| ++.+-.+.. ..+++|+++++++|+|+.+
T Consensus 33 g~~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l 106 (260)
T KOG2739|consen 33 GKLGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL 106 (260)
T ss_pred CCcccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc
Confidence 34555566667777777777777653 34556788888888888 444433333 5568888888888877643
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.45 E-value=2.9e-05 Score=81.23 Aligned_cols=110 Identities=15% Similarity=0.038 Sum_probs=53.8
Q ss_pred CccccEEEccCCCCCC--CCC-CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCC--CCCCCCCc
Q 035547 97 SSSFSKLRLASSKPWV--IPI-LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQE--PYHISGRT 171 (482)
Q Consensus 97 ~~~L~~L~l~~n~l~~--l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~--~~~~~~~l 171 (482)
+|.|+.|.+.+-.+.. ... +.++++|..||+|+.+++.. .++..+.+ |+.|.+.+=.+..... .+|.+.+|
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lkn--Lq~L~mrnLe~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKN--LQVLSMRNLEFESYQDLIDLFNLKKL 222 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhcccc--HHHHhccCCCCCchhhHHHHhcccCC
Confidence 3555555555544431 122 55556666666666666522 44445555 5555555544443221 22344455
Q ss_pred cEEEccCCccccc------ChhhhhcCCCCCEEeCCCCcccccCC
Q 035547 172 YSFSTINKSLIGF------IPEYICKATYFQVLDLSNNNLSGSIP 210 (482)
Q Consensus 172 ~~L~l~~n~~~~~------~~~~~~~l~~L~~L~l~~n~l~~~~~ 210 (482)
+.||+|....... .-+.-..+|+|+.||+|++.+...+-
T Consensus 223 ~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l 267 (699)
T KOG3665|consen 223 RVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL 267 (699)
T ss_pred CeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence 5555544333221 11122336777777777776664433
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.34 E-value=0.00018 Score=64.25 Aligned_cols=85 Identities=21% Similarity=0.255 Sum_probs=55.1
Q ss_pred ccceEEccCCCCCchhhhcccCCCCCEEeCCCc--ccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEE
Q 035547 220 TLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNN--HISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIV 297 (482)
Q Consensus 220 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L 297 (482)
.|+.+.+.+..++++. .+..+++|+.|+++.| ++.+-++.-...+++|+++++++|+|..... ......+.+|..|
T Consensus 44 ~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst-l~pl~~l~nL~~L 121 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST-LRPLKELENLKSL 121 (260)
T ss_pred chhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc-cchhhhhcchhhh
Confidence 4555555555554442 4556778888888888 6655455445566888888888888874322 3445566777777
Q ss_pred ecCCCCCcc
Q 035547 298 DLASNKFSG 306 (482)
Q Consensus 298 ~Ls~n~l~~ 306 (482)
|+.+|..+.
T Consensus 122 dl~n~~~~~ 130 (260)
T KOG2739|consen 122 DLFNCSVTN 130 (260)
T ss_pred hcccCCccc
Confidence 877776553
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.16 E-value=0.00079 Score=55.06 Aligned_cols=60 Identities=18% Similarity=0.211 Sum_probs=24.2
Q ss_pred hcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecC
Q 035547 237 SLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLA 300 (482)
Q Consensus 237 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls 300 (482)
+|.++.+|+.+.+.. .+..+....|.++.+|+.+.+.++ +.... ...|..+++++.+.+.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~--~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIG--DNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE---TTTTTT-TT-EEEEET
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccc--eeeeeccccccccccc
Confidence 344455555555553 344444445555555555555543 33332 3445555555555554
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.15 E-value=0.0013 Score=53.79 Aligned_cols=63 Identities=14% Similarity=0.261 Sum_probs=35.2
Q ss_pred CCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCc
Q 035547 11 SIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLN 76 (482)
Q Consensus 11 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~ 76 (482)
+|.++++|+.+.+.. .+..+...+|.++++|+.+.+.++ +..+.... ..+++|+.+.+.+ .+.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~ 70 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK 70 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc
Confidence 577777888888874 566666667888888888888775 55555444 5666777777765 444
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=3.4e-05 Score=69.08 Aligned_cols=85 Identities=24% Similarity=0.182 Sum_probs=36.9
Q ss_pred cceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecC
Q 035547 221 LGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLA 300 (482)
Q Consensus 221 L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls 300 (482)
.++|+.-++.++.+. ....++.|++|.||-|.|+... .+..+.+|++|+|..|.|..... -.-+.++++|+.|.|.
T Consensus 21 vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldE-L~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDE-LEYLKNLPSLRTLWLD 96 (388)
T ss_pred hhhhcccCCCccHHH-HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHH-HHHHhcCchhhhHhhc
Confidence 344444444444332 2334444555555555554422 23444455555555554443321 1223444455555555
Q ss_pred CCCCcccCC
Q 035547 301 SNKFSGRLS 309 (482)
Q Consensus 301 ~n~l~~~~~ 309 (482)
.|.-.+.-+
T Consensus 97 ENPCc~~ag 105 (388)
T KOG2123|consen 97 ENPCCGEAG 105 (388)
T ss_pred cCCcccccc
Confidence 544444333
No 66
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.05 E-value=2.3e-05 Score=74.09 Aligned_cols=279 Identities=16% Similarity=0.145 Sum_probs=137.3
Q ss_pred CCCCEEeCCCCcCCCCCc-h-hccCCCCCCEEeCCCCc-ccCCCC-CC-CCCCCCCEEECcCC-CCcccccCCCCccccc
Q 035547 16 ENLTRVDLRSYNFTRPIP-T-SMANLAQLFHMDFSSNH-FSGPIP-SL-HKSRNLNYLDLSSN-NLNEIHLLSNNQFENQ 89 (482)
Q Consensus 16 ~~L~~L~L~~n~l~~~~~-~-~~~~l~~L~~L~L~~n~-l~~~~~-~~-~~l~~L~~L~Ls~N-~i~~l~~l~~n~l~~~ 89 (482)
..|+.|.++++.=.+.-+ . .-..++++++|++.++. ++...- .. ..+++|++|+|..+ .|+.. .+..
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~------~Lk~- 210 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDV------SLKY- 210 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHH------HHHH-
Confidence 357788888776444322 1 23457888888888876 222111 11 66888888888874 33322 0100
Q ss_pred CCCCCcCCccccEEEccCCC-CC--CCCC-CCCCCCCCEEEcccCcccccCChhhhhcCC--CCccEEeCCCC-cccCCC
Q 035547 90 FPEISNMSSSFSKLRLASSK-PW--VIPI-LKNQSQLSFFYISNNQISGEIPNWIWEVGG--VNLYFLNLSQN-LLVSLQ 162 (482)
Q Consensus 90 ~p~~~~~~~~L~~L~l~~n~-l~--~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--~~L~~L~L~~n-~i~~~~ 162 (482)
.....++|++++++-|. +. .+.. +.+++.++.+.+.++. +...+.+..+.. ..+..+++.++ .+++..
T Consensus 211 ---la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~--e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~ 285 (483)
T KOG4341|consen 211 ---LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL--ELELEALLKAAAYCLEILKLNLQHCNQLTDED 285 (483)
T ss_pred ---HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccc--cccHHHHHHHhccChHhhccchhhhccccchH
Confidence 01112677777777664 22 3434 6777777777776532 122223322221 11555665454 344421
Q ss_pred CCCCCCCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCC-Cch--hhhcc
Q 035547 163 EPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNL-GVV--LKSLA 239 (482)
Q Consensus 163 ~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~--~~~~~ 239 (482)
+-..-..+..|+.|+.+++.-.+..+-.--....++|+.+.++.++- +.. ...-.
T Consensus 286 ----------------------~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r 343 (483)
T KOG4341|consen 286 ----------------------LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR 343 (483)
T ss_pred ----------------------HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc
Confidence 11122345556666666543322221111111223666666666543 111 11123
Q ss_pred cCCCCCEEeCCCcccCCC--cChhhhcCCCCcEEEcccCcccccc---CCCCCCCCCCCCCEEecCCCCCcccCCHHHHH
Q 035547 240 NCNMLQVLDLRNNHISDN--FPCWLRNAFSLQVLVFRSNNFSERI---SCPRNNVSWPLLKIVDLASNKFSGRLSQKWLL 314 (482)
Q Consensus 240 ~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 314 (482)
+++.|+.+++........ +..--.+++.|+++.++++...... .....-..+..|+.+.|+++.... +.
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~---d~--- 417 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT---DA--- 417 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch---HH---
Confidence 445677777666554321 1122234567777777766533211 011222455667777777776431 11
Q ss_pred HHHHHHhhcCCcceEEeCCCCc
Q 035547 315 TMMIIQLKIPNIFTSIDCSSNN 336 (482)
Q Consensus 315 ~~~~~~~~~~~~L~~L~Ls~n~ 336 (482)
..+.+...++|+.+++-.+.
T Consensus 418 --~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 418 --TLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred --HHHHHhhCcccceeeeechh
Confidence 11344566677777766554
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.0001 Score=66.13 Aligned_cols=96 Identities=28% Similarity=0.189 Sum_probs=72.8
Q ss_pred ccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEcc
Q 035547 148 LYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLR 227 (482)
Q Consensus 148 L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~ 227 (482)
.+.|+..++.+.++ ....+|+.|++|.|+-|+|+..-| +.... +|++|+|.
T Consensus 21 vkKLNcwg~~L~DI-------------------------sic~kMp~lEVLsLSvNkIssL~p--l~rCt--rLkElYLR 71 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDI-------------------------SICEKMPLLEVLSLSVNKISSLAP--LQRCT--RLKELYLR 71 (388)
T ss_pred hhhhcccCCCccHH-------------------------HHHHhcccceeEEeeccccccchh--HHHHH--HHHHHHHH
Confidence 66777777777764 345679999999999999984433 33444 89999999
Q ss_pred CCCCCchhh--hcccCCCCCEEeCCCcccCCCcCh-----hhhcCCCCcEEE
Q 035547 228 RNNLGVVLK--SLANCNMLQVLDLRNNHISDNFPC-----WLRNAFSLQVLV 272 (482)
Q Consensus 228 ~n~l~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~-----~~~~l~~L~~L~ 272 (482)
.|.|..+.. -+.++++|+.|+|..|...+..+. .+..+++|+.||
T Consensus 72 kN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 72 KNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999977764 567889999999999987765543 355678888885
No 68
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.96 E-value=6.8e-05 Score=70.96 Aligned_cols=276 Identities=13% Similarity=0.063 Sum_probs=133.7
Q ss_pred ccccEEEccCCCCCC---CCC-CCCCCCCCEEEcccCcccccCChhhhhcCC--CCccEEeCCCC-cccCCCCC-CC-CC
Q 035547 98 SSFSKLRLASSKPWV---IPI-LKNQSQLSFFYISNNQISGEIPNWIWEVGG--VNLYFLNLSQN-LLVSLQEP-YH-IS 168 (482)
Q Consensus 98 ~~L~~L~l~~n~l~~---l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--~~L~~L~L~~n-~i~~~~~~-~~-~~ 168 (482)
..+++|++++++-.. +-. -.+++++++|++.++.. .....+..+.. .+|+.|++..+ .++...-. +. ..
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~--iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKK--ITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhccee--ccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 446777777776442 222 56677777777776652 22222222211 13777777663 34432111 11 44
Q ss_pred CCccEEEccCCccc-cc-ChhhhhcCCCCCEEeCCCCcccccCChhhhh--cCcCccceEEccCCCC-Cch--hhhcccC
Q 035547 169 GRTYSFSTINKSLI-GF-IPEYICKATYFQVLDLSNNNLSGSIPACLIT--KSSTTLGVLNLRRNNL-GVV--LKSLANC 241 (482)
Q Consensus 169 ~~l~~L~l~~n~~~-~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~~~~L~~L~l~~n~l-~~~--~~~~~~l 241 (482)
+++++++++++... +. +...+.++..++.+.+.++.-.+ .+.+.. .....+..+++.++.. +.. ...-..+
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 55666666555432 11 22233445555555555442211 111111 1111345555555432 221 1222345
Q ss_pred CCCCEEeCCCccc-CCCcChhh-hcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHH
Q 035547 242 NMLQVLDLRNNHI-SDNFPCWL-RNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMII 319 (482)
Q Consensus 242 ~~L~~L~Ls~N~l-~~~~~~~~-~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 319 (482)
..|++|+.++..- ++..-..+ .+..+|+++-+++++.-+.......-.+++.|+.+++..+...... ....
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~-------tL~s 366 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG-------TLAS 366 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh-------hHhh
Confidence 6777777776433 22111222 2456777777777663222211122345677777777776432110 1112
Q ss_pred HhhcCCcceEEeCCCCcccccC-----hHhhhcCCCCCeeeccCCcCc-ccccccccCCCCCCEEeCCCCC
Q 035547 320 QLKIPNIFTSIDCSSNNFEGPM-----PEEMGRFKSLYAPNMSHNALK-GSIPSSFGNLKQIESLDLLMNN 384 (482)
Q Consensus 320 ~~~~~~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 384 (482)
...+.+.|+++.|+++..-... ...-..+..|..+.|+++... ...-+.+..++.|+.+++=+.+
T Consensus 367 ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 367 LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 3356677777777766543111 111234567777777777543 2333445566677776665543
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.93 E-value=0.00017 Score=72.30 Aligned_cols=94 Identities=23% Similarity=0.193 Sum_probs=54.0
Q ss_pred ChhhhhcCCCCCEEeCCCCcccccCCh----hhhhcCcCccceEEccCCCC-----CchhhhcccCCCCCEEeCCCcccC
Q 035547 185 IPEYICKATYFQVLDLSNNNLSGSIPA----CLITKSSTTLGVLNLRRNNL-----GVVLKSLANCNMLQVLDLRNNHIS 255 (482)
Q Consensus 185 ~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~~~~~~L~~L~l~~n~l-----~~~~~~~~~l~~L~~L~Ls~N~l~ 255 (482)
+...+...+.|+.|++++|.+.+.--. .+... ...+++|++..|.+ ..+...+.....++++|++.|.+.
T Consensus 107 l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~-~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 107 LAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLP-QCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HHHHhcccccHhHhhcccCCCccHhHHHHHhhcccc-hHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccc
Confidence 344566678888888888888632111 11111 12667777777766 334456666777888888888774
Q ss_pred CC----cChhhh----cCCCCcEEEcccCccc
Q 035547 256 DN----FPCWLR----NAFSLQVLVFRSNNFS 279 (482)
Q Consensus 256 ~~----~~~~~~----~l~~L~~L~L~~N~i~ 279 (482)
.. .+..+. ...++++|+++++.++
T Consensus 186 ~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 186 ELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred hhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 21 122222 2445566666665554
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.42 E-value=0.0059 Score=32.55 Aligned_cols=19 Identities=53% Similarity=0.628 Sum_probs=9.4
Q ss_pred CCeeeccCCcCccccccccc
Q 035547 351 LYAPNMSHNALKGSIPSSFG 370 (482)
Q Consensus 351 L~~L~Ls~N~l~~~~~~~~~ 370 (482)
|++|+|++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4444443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.35 E-value=0.0061 Score=32.48 Aligned_cols=21 Identities=48% Similarity=0.725 Sum_probs=12.9
Q ss_pred CCCEEeCCCCcCCCCCchhccC
Q 035547 17 NLTRVDLRSYNFTRPIPTSMAN 38 (482)
Q Consensus 17 ~L~~L~L~~n~l~~~~~~~~~~ 38 (482)
+|++||+++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3667777777776 35555554
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.88 E-value=0.00034 Score=70.14 Aligned_cols=185 Identities=23% Similarity=0.208 Sum_probs=103.1
Q ss_pred CCCEEEcccCcccccCChhhhhc--CCCCccEEeCCCCcccCCC-----CCCCC-CCCccEEEccCCccccc----Chhh
Q 035547 121 QLSFFYISNNQISGEIPNWIWEV--GGVNLYFLNLSQNLLVSLQ-----EPYHI-SGRTYSFSTINKSLIGF----IPEY 188 (482)
Q Consensus 121 ~L~~L~Ls~n~l~~~~~~~~~~l--~~~~L~~L~L~~n~i~~~~-----~~~~~-~~~l~~L~l~~n~~~~~----~~~~ 188 (482)
.+..|.|.+|.+.......+... +.++|+.|++++|.+.... ..+.. -..++.|++..+.+++. +.+.
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 38889999999975433333221 1234899999999888432 11112 14566677777776654 3445
Q ss_pred hhcCCCCCEEeCCCCcccc----cCChhhhh--cCcCccceEEccCCCCCc-----hhhhcccCCC-CCEEeCCCcccCC
Q 035547 189 ICKATYFQVLDLSNNNLSG----SIPACLIT--KSSTTLGVLNLRRNNLGV-----VLKSLANCNM-LQVLDLRNNHISD 256 (482)
Q Consensus 189 ~~~l~~L~~L~l~~n~l~~----~~~~~~~~--~~~~~L~~L~l~~n~l~~-----~~~~~~~l~~-L~~L~Ls~N~l~~ 256 (482)
+...+.++.++++.|.+.. .++..+.. ....++++|.+.+|.++. +...+...+. +.+|++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 5556777788888877641 12222222 112267777777777632 2223444444 5567777777664
Q ss_pred C----cChhhhcC-CCCcEEEcccCccccccC--CCCCCCCCCCCCEEecCCCCCc
Q 035547 257 N----FPCWLRNA-FSLQVLVFRSNNFSERIS--CPRNNVSWPLLKIVDLASNKFS 305 (482)
Q Consensus 257 ~----~~~~~~~l-~~L~~L~L~~N~i~~~~~--~~~~~~~l~~L~~L~Ls~n~l~ 305 (482)
. ....+..+ ..+++++++.|.|+.... .......++.++++.++.|.+.
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 3 11223333 455677777776653210 1123344556666666666654
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.03 E-value=0.062 Score=26.48 Aligned_cols=11 Identities=45% Similarity=0.649 Sum_probs=3.1
Q ss_pred cceEEccCCCC
Q 035547 221 LGVLNLRRNNL 231 (482)
Q Consensus 221 L~~L~l~~n~l 231 (482)
|++|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33333333333
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.08 E-value=0.057 Score=55.00 Aligned_cols=112 Identities=19% Similarity=0.154 Sum_probs=59.1
Q ss_pred CCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCC--CCCch----hhhcccCCCCCEEeCCCcc-cCCCcChhhhc
Q 035547 192 ATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRN--NLGVV----LKSLANCNMLQVLDLRNNH-ISDNFPCWLRN 264 (482)
Q Consensus 192 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n--~l~~~----~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 264 (482)
++.|+.+.+.++.-.....-.......+.|+.|+++++ ..... ......+++|+.|+++... +++..-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56677776666533212111111122237777777762 11111 1233455777788887776 55433333332
Q ss_pred -CCCCcEEEcccCc-cccccCCCCCCCCCCCCCEEecCCCCC
Q 035547 265 -AFSLQVLVFRSNN-FSERISCPRNNVSWPLLKIVDLASNKF 304 (482)
Q Consensus 265 -l~~L~~L~L~~N~-i~~~~~~~~~~~~l~~L~~L~Ls~n~l 304 (482)
+++|++|.+.++. ++... .......+++|+.|+++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~g-l~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEG-LVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhH-HHHHHHhcCcccEEeeecCcc
Confidence 6778888766665 44221 123345677788888887654
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.30 E-value=0.29 Score=27.07 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=7.9
Q ss_pred CCCCEEeCCCCcCCCC
Q 035547 16 ENLTRVDLRSYNFTRP 31 (482)
Q Consensus 16 ~~L~~L~L~~n~l~~~ 31 (482)
++|+.|+|++|.|+.+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3445555555555543
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.30 E-value=0.29 Score=27.07 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=7.9
Q ss_pred CCCCEEeCCCCcCCCC
Q 035547 16 ENLTRVDLRSYNFTRP 31 (482)
Q Consensus 16 ~~L~~L~L~~n~l~~~ 31 (482)
++|+.|+|++|.|+.+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3445555555555543
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.17 E-value=0.28 Score=27.11 Aligned_cols=18 Identities=44% Similarity=0.521 Sum_probs=9.0
Q ss_pred CCCCEEeCCCcccCCCcC
Q 035547 242 NMLQVLDLRNNHISDNFP 259 (482)
Q Consensus 242 ~~L~~L~Ls~N~l~~~~~ 259 (482)
++|+.|+|++|.++.+.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345555555555554433
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.17 E-value=0.28 Score=27.11 Aligned_cols=18 Identities=44% Similarity=0.521 Sum_probs=9.0
Q ss_pred CCCCEEeCCCcccCCCcC
Q 035547 242 NMLQVLDLRNNHISDNFP 259 (482)
Q Consensus 242 ~~L~~L~Ls~N~l~~~~~ 259 (482)
++|+.|+|++|.++.+.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345555555555554433
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=90.00 E-value=0.32 Score=27.01 Aligned_cols=17 Identities=47% Similarity=0.681 Sum_probs=11.2
Q ss_pred CCCCEEECcCCCCcccc
Q 035547 63 RNLNYLDLSSNNLNEIH 79 (482)
Q Consensus 63 ~~L~~L~Ls~N~i~~l~ 79 (482)
.+|+.|+|++|+|+.+.
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 56677777777776553
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.91 E-value=0.012 Score=51.73 Aligned_cols=59 Identities=12% Similarity=0.133 Sum_probs=37.3
Q ss_pred CcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCc
Q 035547 325 NIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNL 385 (482)
Q Consensus 325 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 385 (482)
..+..||++.|.+. ..|..+.+...++.+++..|+.+ ..|.++...+.++.+++-+|++
T Consensus 65 t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 65 TRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred HHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence 34445555555555 45666666666666666666666 6666677777777777766644
No 81
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=87.98 E-value=0.53 Score=29.00 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=10.2
Q ss_pred eeeehhhHHHHHHHHHHHHHhhch
Q 035547 441 FIAISIGFAVSFGAVVSPLMFFVH 464 (482)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~ 464 (482)
..++++.++++++++.+++++++|
T Consensus 14 a~~VvVPV~vI~~vl~~~l~~~~r 37 (40)
T PF08693_consen 14 AVGVVVPVGVIIIVLGAFLFFWYR 37 (40)
T ss_pred EEEEEechHHHHHHHHHHhheEEe
Confidence 334444444444444444443333
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.63 E-value=0.24 Score=26.82 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=4.8
Q ss_pred cceEEeCCCCccc
Q 035547 326 IFTSIDCSSNNFE 338 (482)
Q Consensus 326 ~L~~L~Ls~n~l~ 338 (482)
+|++|++++|.|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444444
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.39 E-value=0.1 Score=45.19 Aligned_cols=60 Identities=18% Similarity=0.160 Sum_probs=28.3
Q ss_pred CCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCC
Q 035547 243 MLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASN 302 (482)
Q Consensus 243 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n 302 (482)
.++.+|-++..|..+--+.+..++.++.|.+.++.--+.-.....-.-.++|+.|++++|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC 161 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGC 161 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCC
Confidence 355666666555544444455555566665555543221100111123345555555554
No 84
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=86.69 E-value=0.48 Score=34.99 Aligned_cols=34 Identities=12% Similarity=0.064 Sum_probs=21.6
Q ss_pred ceeeeeehhhHHHHHHHHHHHHHhhchhHHHHHH
Q 035547 438 DWFFIAISIGFAVSFGAVVSPLMFFVHVKKWYND 471 (482)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (482)
-|.+++.+.+++++++++..+++++.|||.--.|
T Consensus 41 yWpyLA~GGG~iLilIii~Lv~CC~~K~K~~~~r 74 (98)
T PF07204_consen 41 YWPYLAAGGGLILILIIIALVCCCRAKHKTSAAR 74 (98)
T ss_pred hhHHhhccchhhhHHHHHHHHHHhhhhhhhHhhh
Confidence 4777777766666666666666666666643333
No 85
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=85.88 E-value=0.34 Score=49.29 Aligned_cols=157 Identities=13% Similarity=0.067 Sum_probs=92.2
Q ss_pred CccceEEccCC-CCCc--hhhhcccCCCCCEEeCCCc-ccCCCcC----hhhhcCCCCcEEEcccCc-cccccCCCCCCC
Q 035547 219 TTLGVLNLRRN-NLGV--VLKSLANCNMLQVLDLRNN-HISDNFP----CWLRNAFSLQVLVFRSNN-FSERISCPRNNV 289 (482)
Q Consensus 219 ~~L~~L~l~~n-~l~~--~~~~~~~l~~L~~L~Ls~N-~l~~~~~----~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~~ 289 (482)
+.|+.+.+.++ .+.. +-.....++.|+.|+++++ ......+ .....+.+|+.|++++.. ++... ......
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~-l~~l~~ 266 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG-LSALAS 266 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh-HHHHHh
Confidence 48888888877 4443 5556778899999999873 2211111 233456889999999887 44321 122223
Q ss_pred CCCCCCEEecCCCC-CcccCCHHHHHHHHHHHhhcCCcceEEeCCCCccccc--ChHhhhcCCCCCeeeccCCc----Cc
Q 035547 290 SWPLLKIVDLASNK-FSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGP--MPEEMGRFKSLYAPNMSHNA----LK 362 (482)
Q Consensus 290 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~N~----l~ 362 (482)
.+++|+.|.+.++. +++. .+ .......+.|++|+++++..... +.......++|+.+.+.... ++
T Consensus 267 ~c~~L~~L~l~~c~~lt~~---gl-----~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~ 338 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDE---GL-----VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLT 338 (482)
T ss_pred hCCCcceEccCCCCccchh---HH-----HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHH
Confidence 48899999987776 3422 11 13446778899999998766411 22223345555554433332 21
Q ss_pred c-------------cccccccCCCCCCEEeCCCCC
Q 035547 363 G-------------SIPSSFGNLKQIESLDLLMNN 384 (482)
Q Consensus 363 ~-------------~~~~~~~~l~~L~~L~l~~N~ 384 (482)
. ...-....++.++.+.+.++.
T Consensus 339 ~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 339 DLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred HHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 0 111124566777777777665
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.92 E-value=0.037 Score=48.88 Aligned_cols=57 Identities=14% Similarity=0.034 Sum_probs=22.7
Q ss_pred ccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCc
Q 035547 220 TLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNN 277 (482)
Q Consensus 220 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (482)
.+..++++.|.+..+|..+.....+..+++..|..+. .|.++...+.++++++-+|.
T Consensus 66 ~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 66 RLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred HHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhh-CCccccccCCcchhhhccCc
Confidence 3333444444444444433333333334433333332 33334444444444444433
No 87
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=82.61 E-value=0.81 Score=37.58 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=11.2
Q ss_pred eeeeeehhhHHHHHHHHHHHHHh
Q 035547 439 WFFIAISIGFAVSFGAVVSPLMF 461 (482)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~ 461 (482)
..+++++||+.+.+++++++++|
T Consensus 49 nIVIGvVVGVGg~ill~il~lvf 71 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGILALVF 71 (154)
T ss_pred cEEEEEEecccHHHHHHHHHhhe
Confidence 35666666654444433333333
No 88
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=80.87 E-value=1.8 Score=33.07 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=14.5
Q ss_pred eeeeehhhHHHHHHHHHHHHHhhchhH
Q 035547 440 FFIAISIGFAVSFGAVVSPLMFFVHVK 466 (482)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (482)
.+.++++++++++.+++++++|++.+|
T Consensus 67 aiagi~vg~~~~v~~lv~~l~w~f~~r 93 (96)
T PTZ00382 67 AIAGISVAVVAVVGGLVGFLCWWFVCR 93 (96)
T ss_pred cEEEEEeehhhHHHHHHHHHhheeEEe
Confidence 445555555555555555555554443
No 89
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=80.72 E-value=0.7 Score=36.80 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=14.2
Q ss_pred eeeeehhhHHHHHHHHHHHHHhhchh
Q 035547 440 FFIAISIGFAVSFGAVVSPLMFFVHV 465 (482)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (482)
.++++++|+++++++++++++|+.+|
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666555555555444
No 90
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=78.84 E-value=1.9 Score=37.65 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=16.0
Q ss_pred cceeeeeehhhHHHHHHHHHHHHHhh
Q 035547 437 IDWFFIAISIGFAVSFGAVVSPLMFF 462 (482)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (482)
+.+++++++.|+++++++++++++++
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHHH
Confidence 44566666666666666666666555
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=78.12 E-value=1.5 Score=43.97 Aligned_cols=42 Identities=31% Similarity=0.184 Sum_probs=21.8
Q ss_pred hcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCC
Q 035547 190 CKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNL 231 (482)
Q Consensus 190 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l 231 (482)
...++|..|+|++|+..-....++.......|++|.+.+|.+
T Consensus 241 q~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 241 QIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred HhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcc
Confidence 344666667777662221222233333333666677777766
No 92
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=77.83 E-value=1.4 Score=24.36 Aligned_cols=16 Identities=50% Similarity=0.644 Sum_probs=9.5
Q ss_pred CCCeeeccCCcCccccc
Q 035547 350 SLYAPNMSHNALKGSIP 366 (482)
Q Consensus 350 ~L~~L~Ls~N~l~~~~~ 366 (482)
+|+.|++++|+|+ .+|
T Consensus 3 ~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 3 SLKELNVSNNQLT-SLP 18 (26)
T ss_pred ccceeecCCCccc-cCc
Confidence 4566666666665 444
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=76.84 E-value=14 Score=36.65 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=8.9
Q ss_pred CCCEEeCCCcccCCC
Q 035547 243 MLQVLDLRNNHISDN 257 (482)
Q Consensus 243 ~L~~L~Ls~N~l~~~ 257 (482)
.+++|+...|.+.+.
T Consensus 355 R~q~l~~rdnnldge 369 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGE 369 (553)
T ss_pred eeeEeeccccccccc
Confidence 366666666666553
No 94
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=75.36 E-value=3.1 Score=39.02 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=10.7
Q ss_pred HHHHHHHhhchhHHHH-HHHHHHhhhh
Q 035547 454 AVVSPLMFFVHVKKWY-NDLIYKFIYR 479 (482)
Q Consensus 454 ~~~~~~~~~~~~~~~~-~~~~~~~~~~ 479 (482)
+++++++.|+-||+|+ .+|-++....
T Consensus 268 IVLIMvIIYLILRYRRKKKmkKKlQYi 294 (299)
T PF02009_consen 268 IVLIMVIIYLILRYRRKKKMKKKLQYI 294 (299)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3333333333443333 4444554443
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=73.80 E-value=1.8 Score=51.90 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=22.2
Q ss_pred eccCCcCcccccccccCCCCCCEEeCCCCCccc
Q 035547 355 NMSHNALKGSIPSSFGNLKQIESLDLLMNNLMG 387 (482)
Q Consensus 355 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 387 (482)
||++|+|+...+..|..+++|+.|+|++|++.|
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 466777765555566667777777777777763
No 96
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=72.76 E-value=1.3 Score=26.79 Aligned_cols=8 Identities=25% Similarity=0.410 Sum_probs=3.0
Q ss_pred ehhhHHHH
Q 035547 444 ISIGFAVS 451 (482)
Q Consensus 444 ~~~~~~~~ 451 (482)
++++++++
T Consensus 8 IIv~V~vg 15 (38)
T PF02439_consen 8 IIVAVVVG 15 (38)
T ss_pred HHHHHHHH
Confidence 33333333
No 97
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=72.02 E-value=3.4 Score=23.30 Aligned_cols=14 Identities=50% Similarity=0.629 Sum_probs=9.2
Q ss_pred CCCCEEECcCCCCc
Q 035547 63 RNLNYLDLSSNNLN 76 (482)
Q Consensus 63 ~~L~~L~Ls~N~i~ 76 (482)
++|++|+|++|.|+
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777664
No 98
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.94 E-value=2 Score=37.44 Aligned_cols=35 Identities=14% Similarity=0.079 Sum_probs=20.2
Q ss_pred CccEEEccCCcccccChhhhhcCCCCCEEeCCCCc
Q 035547 170 RTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNN 204 (482)
Q Consensus 170 ~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 204 (482)
.++.++-++..|...--+.+..++.++.|.+.++.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 44555555555555455556666666666666553
No 99
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=70.84 E-value=2.4 Score=42.64 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=26.6
Q ss_pred ccccEEEccCCCCCCCCC----CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccC
Q 035547 98 SSFSKLRLASSKPWVIPI----LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVS 160 (482)
Q Consensus 98 ~~L~~L~l~~n~l~~l~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~ 160 (482)
+.+..++|++|++..+.. -...++|++|+|++|...-....++.++....|++|-+.+|.+.+
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 344445555555443333 233345555555555221112222333332235555555554443
No 100
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=61.69 E-value=2.4 Score=32.73 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHhh
Q 035547 453 GAVVSPLMFFVHVKKWYNDLIYKFI 477 (482)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (482)
++++.+-+|++|+|..|+...++..
T Consensus 37 giLLliGCWYckRRSGYk~L~~k~~ 61 (118)
T PF14991_consen 37 GILLLIGCWYCKRRSGYKTLRDKSL 61 (118)
T ss_dssp -------------------------
T ss_pred HHHHHHhheeeeecchhhhhhhccc
Confidence 3344444555566677777766543
No 101
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=60.60 E-value=2.8 Score=28.84 Aligned_cols=11 Identities=9% Similarity=0.256 Sum_probs=0.4
Q ss_pred HHHHHHHhhch
Q 035547 454 AVVSPLMFFVH 464 (482)
Q Consensus 454 ~~~~~~~~~~~ 464 (482)
+++.+++|+.+
T Consensus 27 lLIlf~iyR~r 37 (64)
T PF01034_consen 27 LLILFLIYRMR 37 (64)
T ss_dssp ----------S
T ss_pred HHHHHHHHHHH
Confidence 33333444433
No 102
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=60.12 E-value=5.1 Score=31.69 Aligned_cols=29 Identities=7% Similarity=0.266 Sum_probs=0.0
Q ss_pred eeeeeehhhHHHHHHHHHHHHHhhchhHH
Q 035547 439 WFFIAISIGFAVSFGAVVSPLMFFVHVKK 467 (482)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (482)
|.+.+.+.+++++++++.++++|++.+|+
T Consensus 79 ~pi~~sal~v~lVl~llsg~lv~rrcrrr 107 (129)
T PF12191_consen 79 WPILGSALSVVLVLALLSGFLVWRRCRRR 107 (129)
T ss_dssp -----------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhcc
Confidence 34333444444444444455555544443
No 103
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=58.73 E-value=4.6 Score=26.44 Aligned_cols=33 Identities=9% Similarity=-0.096 Sum_probs=19.7
Q ss_pred eehhhHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 035547 443 AISIGFAVSFGAVVSPLMFFVHVKKWYNDLIYK 475 (482)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (482)
.++++.++++++++++.++-.-+++.|++.++.
T Consensus 3 ~~~iV~i~iv~~lLg~~I~~~~K~ygYkht~d~ 35 (50)
T PF12606_consen 3 AFLIVSIFIVMGLLGLSICTTLKAYGYKHTVDP 35 (50)
T ss_pred ehHHHHHHHHHHHHHHHHHHHhhccccccccCC
Confidence 344445555566666666666666677665544
No 104
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=58.69 E-value=36 Score=31.47 Aligned_cols=7 Identities=14% Similarity=0.387 Sum_probs=2.9
Q ss_pred cceeeee
Q 035547 437 IDWFFIA 443 (482)
Q Consensus 437 ~~~~~~~ 443 (482)
..|.+++
T Consensus 211 ~~W~iv~ 217 (278)
T PF06697_consen 211 WWWKIVV 217 (278)
T ss_pred eeEEEEE
Confidence 3444333
No 105
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=58.37 E-value=46 Score=33.25 Aligned_cols=60 Identities=23% Similarity=0.280 Sum_probs=31.9
Q ss_pred CCCEEeCCCCcCCCCCchhccCC---CCCCEEeCCCCcccC--CCCC-C-CCCCCCCEEECcCCCCc
Q 035547 17 NLTRVDLRSYNFTRPIPTSMANL---AQLFHMDFSSNHFSG--PIPS-L-HKSRNLNYLDLSSNNLN 76 (482)
Q Consensus 17 ~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~--~~~~-~-~~l~~L~~L~Ls~N~i~ 76 (482)
.+.+++|+.|.....+|.....+ .-++.++.+.-.+.- .... . +.-.+|+..+++.|..+
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCC
Confidence 35667777776666555543322 345666665554431 1111 1 44556777777776554
No 106
>PF15102 TMEM154: TMEM154 protein family
Probab=56.73 E-value=8.9 Score=31.46 Aligned_cols=29 Identities=7% Similarity=0.158 Sum_probs=15.7
Q ss_pred ceeeeeehhhHHHHHHHHHHHHHhhchhH
Q 035547 438 DWFFIAISIGFAVSFGAVVSPLMFFVHVK 466 (482)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (482)
-..+++-.++++++++++++++++++|||
T Consensus 58 iLmIlIP~VLLvlLLl~vV~lv~~~kRkr 86 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCLVIYYKRKR 86 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHheeEEeecc
Confidence 34555555555555555555555555554
No 107
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=51.21 E-value=9.2 Score=27.90 Aligned_cols=12 Identities=17% Similarity=-0.050 Sum_probs=2.5
Q ss_pred HHHHHHHHHhhh
Q 035547 467 KWYNDLIYKFIY 478 (482)
Q Consensus 467 ~~~~~~~~~~~~ 478 (482)
....+.+++..+
T Consensus 33 ~~rqrkId~li~ 44 (81)
T PF00558_consen 33 IKRQRKIDRLIE 44 (81)
T ss_dssp ------CHHHHH
T ss_pred HHHHHhHHHHHH
Confidence 333344444433
No 108
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=50.97 E-value=41 Score=21.59 Aligned_cols=31 Identities=3% Similarity=0.157 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHHHhh
Q 035547 447 GFAVSFGAVVSPLMFFVHVKKWYNDLIYKFI 477 (482)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (482)
+.++.++++++.++.-...++...+.+.+..
T Consensus 10 sYg~t~~~l~~l~~~~~~~~r~~~~~l~~~~ 40 (46)
T PF04995_consen 10 SYGVTALVLAGLIVWSLRRRRRLRKELKRLE 40 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 109
>PF15050 SCIMP: SCIMP protein
Probab=50.01 E-value=9.2 Score=29.86 Aligned_cols=16 Identities=13% Similarity=0.337 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhhch
Q 035547 449 AVSFGAVVSPLMFFVH 464 (482)
Q Consensus 449 ~~~~~~~~~~~~~~~~ 464 (482)
++++.+++++++||..
T Consensus 16 II~vS~~lglIlyCvc 31 (133)
T PF15050_consen 16 IILVSVVLGLILYCVC 31 (133)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555555555433
No 110
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=49.39 E-value=4.4 Score=38.56 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=5.7
Q ss_pred ehhhHHHHHHHHHH
Q 035547 444 ISIGFAVSFGAVVS 457 (482)
Q Consensus 444 ~~~~~~~~~~~~~~ 457 (482)
++||++++++++++
T Consensus 275 IaVG~~La~lvliv 288 (306)
T PF01299_consen 275 IAVGAALAGLVLIV 288 (306)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444433333333
No 111
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=49.07 E-value=10 Score=33.18 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=14.8
Q ss_pred eeeeeehhhHHHHHHHHHHHHHhhchhH
Q 035547 439 WFFIAISIGFAVSFGAVVSPLMFFVHVK 466 (482)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (482)
..++-+++++++++++++.++++..-+|
T Consensus 34 ~d~~~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 34 KDYVKIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred ccceeeeeeeecchhhhHHHHHHHHHHH
Confidence 4455555555555555555555554444
No 112
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=48.33 E-value=12 Score=36.99 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=20.8
Q ss_pred eeeeeehhhHHHHHHHHHHHHHhhchhH
Q 035547 439 WFFIAISIGFAVSFGAVVSPLMFFVHVK 466 (482)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (482)
..++++.|+++|++..+++|+.||+--|
T Consensus 367 gaIaGIsvavvvvVgglvGfLcWwf~cr 394 (397)
T PF03302_consen 367 GAIAGISVAVVVVVGGLVGFLCWWFICR 394 (397)
T ss_pred cceeeeeehhHHHHHHHHHHHhhheeec
Confidence 4666777777788888888888886543
No 113
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=48.30 E-value=13 Score=34.94 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=11.0
Q ss_pred eehhhHHHHHHHHHHHHHhhch
Q 035547 443 AISIGFAVSFGAVVSPLMFFVH 464 (482)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~ 464 (482)
+++++++|++++++..++.|||
T Consensus 262 iiaIliIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 262 IIAILIIVLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555544
No 114
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=46.27 E-value=9.8 Score=27.51 Aligned_cols=7 Identities=0% Similarity=0.112 Sum_probs=2.6
Q ss_pred HHhhchh
Q 035547 459 LMFFVHV 465 (482)
Q Consensus 459 ~~~~~~~ 465 (482)
++++.++
T Consensus 20 ~~~~~rr 26 (75)
T PF14575_consen 20 VIVCFRR 26 (75)
T ss_dssp HHCCCTT
T ss_pred EEEEEee
Confidence 3333333
No 115
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=45.91 E-value=22 Score=22.30 Aligned_cols=29 Identities=7% Similarity=-0.068 Sum_probs=14.2
Q ss_pred eehhhHHHHHHHHHHHHHhhchhHHHHHH
Q 035547 443 AISIGFAVSFGAVVSPLMFFVHVKKWYND 471 (482)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (482)
...++++++++.-++..+|..-+..+-.+
T Consensus 8 iFsvvIil~If~~iGl~IyQkikqIrgKk 36 (49)
T PF11044_consen 8 IFSVVIILGIFAWIGLSIYQKIKQIRGKK 36 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444455555556666665444333333
No 116
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=44.80 E-value=30 Score=28.73 Aligned_cols=16 Identities=6% Similarity=-0.004 Sum_probs=7.7
Q ss_pred hchhHHHHHHHHHHhh
Q 035547 462 FVHVKKWYNDLIYKFI 477 (482)
Q Consensus 462 ~~~~~~~~~~~~~~~~ 477 (482)
+++++.+|+|...+..
T Consensus 43 r~~~~~~yrr~Al~~L 58 (146)
T PF14316_consen 43 RRWRRNRYRREALREL 58 (146)
T ss_pred HHHHccHHHHHHHHHH
Confidence 3334445666555444
No 117
>PHA03265 envelope glycoprotein D; Provisional
Probab=44.47 E-value=23 Score=33.50 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=15.2
Q ss_pred eeeeeehhhHHHHHHHHHHHHHhhchhH
Q 035547 439 WFFIAISIGFAVSFGAVVSPLMFFVHVK 466 (482)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (482)
...+++++|..++.++++++++|..++|
T Consensus 347 ~~~~g~~ig~~i~glv~vg~il~~~~rr 374 (402)
T PHA03265 347 STFVGISVGLGIAGLVLVGVILYVCLRR 374 (402)
T ss_pred CcccceEEccchhhhhhhhHHHHHHhhh
Confidence 3455666666555555555555554443
No 118
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=42.85 E-value=19 Score=25.24 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=15.2
Q ss_pred ceeeeeehhhHHHHHHHHHHHHHhhch
Q 035547 438 DWFFIAISIGFAVSFGAVVSPLMFFVH 464 (482)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (482)
.|..|+++.+++++++..+.=++|+++
T Consensus 32 qW~aIGvi~gi~~~~lt~ltN~YFK~k 58 (68)
T PF04971_consen 32 QWAAIGVIGGIFFGLLTYLTNLYFKIK 58 (68)
T ss_pred cchhHHHHHHHHHHHHHHHhHhhhhhh
Confidence 466666666666665555554444443
No 119
>PF15050 SCIMP: SCIMP protein
Probab=42.78 E-value=6 Score=30.86 Aligned_cols=28 Identities=11% Similarity=0.243 Sum_probs=17.4
Q ss_pred eeeeeehhhHHHHHHHHHHHHHhhchhH
Q 035547 439 WFFIAISIGFAVSFGAVVSPLMFFVHVK 466 (482)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (482)
|+++++++.++-++++++..++|+...|
T Consensus 9 WiiLAVaII~vS~~lglIlyCvcR~~lR 36 (133)
T PF15050_consen 9 WIILAVAIILVSVVLGLILYCVCRWQLR 36 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666665544
No 120
>PRK00523 hypothetical protein; Provisional
Probab=42.11 E-value=20 Score=25.42 Aligned_cols=24 Identities=8% Similarity=-0.010 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHH
Q 035547 446 IGFAVSFGAVVSPLMFFVHVKKWY 469 (482)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~ 469 (482)
++++++++.+++.+++-+++-..|
T Consensus 10 l~i~~li~G~~~Gffiark~~~k~ 33 (72)
T PRK00523 10 LGIPLLIVGGIIGYFVSKKMFKKQ 33 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444433333
No 121
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=42.09 E-value=21 Score=26.26 Aligned_cols=14 Identities=0% Similarity=-0.240 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHhh
Q 035547 449 AVSFGAVVSPLMFF 462 (482)
Q Consensus 449 ~~~~~~~~~~~~~~ 462 (482)
++++++++.+++|.
T Consensus 43 iFil~VilwfvCC~ 56 (94)
T PF05393_consen 43 IFILLVILWFVCCK 56 (94)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444433333
No 122
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=40.79 E-value=14 Score=29.56 Aligned_cols=17 Identities=12% Similarity=0.028 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHhhchhH
Q 035547 450 VSFGAVVSPLMFFVHVK 466 (482)
Q Consensus 450 ~~~~~~~~~~~~~~~~~ 466 (482)
+++++++.+++.++++|
T Consensus 78 Ig~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 78 IGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 33334444444444443
No 123
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=40.78 E-value=9.1 Score=35.72 Aligned_cols=30 Identities=13% Similarity=0.180 Sum_probs=0.0
Q ss_pred eeeeehhhHHHHHHHHHHHHHhhchhHHHH
Q 035547 440 FFIAISIGFAVSFGAVVSPLMFFVHVKKWY 469 (482)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (482)
++.++++++++++++++++++|++|++...
T Consensus 149 ~IpaVVI~~iLLIA~iIa~icyrrkR~GK~ 178 (290)
T PF05454_consen 149 FIPAVVIAAILLIAGIIACICYRRKRKGKM 178 (290)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 333444444444444444444444444333
No 124
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=40.44 E-value=31 Score=25.20 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=14.4
Q ss_pred ceeeeeehhhHHHHHHHHH-HHHHhhchh
Q 035547 438 DWFFIAISIGFAVSFGAVV-SPLMFFVHV 465 (482)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 465 (482)
.|.++.++.+.+++++.+. +++++|.|+
T Consensus 15 ~~yyiiA~gga~llL~~v~l~vvL~C~r~ 43 (87)
T PF11980_consen 15 YWYYIIAMGGALLLLVAVCLGVVLYCHRF 43 (87)
T ss_pred eeeHHHhhccHHHHHHHHHHHHHHhhhhh
Confidence 4565655555555444444 455555444
No 125
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=39.82 E-value=42 Score=25.55 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=5.5
Q ss_pred Ccceeeeeehhh
Q 035547 436 EIDWFFIAISIG 447 (482)
Q Consensus 436 ~~~~~~~~~~~~ 447 (482)
...|.+++.+++
T Consensus 14 g~sW~~LVGVv~ 25 (102)
T PF15176_consen 14 GRSWPFLVGVVV 25 (102)
T ss_pred CcccHhHHHHHH
Confidence 445655443333
No 126
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=39.04 E-value=61 Score=20.69 Aligned_cols=28 Identities=0% Similarity=0.102 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 035547 448 FAVSFGAVVSPLMFFVHVKKWYNDLIYK 475 (482)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (482)
.++.++++++.++.-.+.++...+.+.+
T Consensus 12 Yg~t~l~l~~li~~~~~~~r~~~~~l~~ 39 (45)
T TIGR03141 12 YGITALVLAGLILWSLLDRRRLLRELRR 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334434344444443444444433
No 127
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=38.98 E-value=42 Score=29.48 Aligned_cols=19 Identities=5% Similarity=0.242 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhhchhHHH
Q 035547 450 VSFGAVVSPLMFFVHVKKW 468 (482)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~ 468 (482)
++++++.+.+||+..||.|
T Consensus 112 lLla~~~~~~Y~~~~Rrs~ 130 (202)
T PF06365_consen 112 LLLAILLGAGYCCHQRRSW 130 (202)
T ss_pred HHHHHHHHHHHHhhhhccC
Confidence 3444444444444444444
No 128
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=38.69 E-value=24 Score=19.24 Aligned_cols=11 Identities=27% Similarity=0.380 Sum_probs=5.0
Q ss_pred CCCCEEeCCCC
Q 035547 40 AQLFHMDFSSN 50 (482)
Q Consensus 40 ~~L~~L~L~~n 50 (482)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444444444
No 129
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=37.77 E-value=37 Score=35.15 Aligned_cols=20 Identities=10% Similarity=0.230 Sum_probs=10.9
Q ss_pred CcceeeeeehhhHHHHHHHH
Q 035547 436 EIDWFFIAISIGFAVSFGAV 455 (482)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~ 455 (482)
...|+++++++.++++++++
T Consensus 267 ~NlWII~gVlvPv~vV~~Ii 286 (684)
T PF12877_consen 267 NNLWIIAGVLVPVLVVLLII 286 (684)
T ss_pred CCeEEEehHhHHHHHHHHHH
Confidence 34577777665554444333
No 130
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=36.73 E-value=56 Score=20.78 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=12.1
Q ss_pred eeeeeehhhHHHHHHHHHHHH
Q 035547 439 WFFIAISIGFAVSFGAVVSPL 459 (482)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~ 459 (482)
|.++++++..++.+++++++.
T Consensus 2 Wl~V~~iilg~~ll~~LigiC 22 (49)
T PF05624_consen 2 WLFVVLIILGALLLLLLIGIC 22 (49)
T ss_pred eEEEeHHHHHHHHHHHHHHHH
Confidence 555555555555555666554
No 131
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=35.20 E-value=11 Score=28.27 Aligned_cols=22 Identities=0% Similarity=0.048 Sum_probs=12.3
Q ss_pred eehhhHHHHHHHHHHHHHhhch
Q 035547 443 AISIGFAVSFGAVVSPLMFFVH 464 (482)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~ 464 (482)
..+++++.++.++.++++++.+
T Consensus 20 v~~~al~~l~~~isGl~l~~p~ 41 (88)
T PF13703_consen 20 VGILALLLLLLLISGLYLWWPR 41 (88)
T ss_pred HHHHHHHHHHHHHHHHHHhhHH
Confidence 3344455555666666666543
No 132
>PF15069 FAM163: FAM163 family
Probab=34.05 E-value=56 Score=26.75 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=12.8
Q ss_pred eeeeehhhHHHHHHHHHHHHHhhc
Q 035547 440 FFIAISIGFAVSFGAVVSPLMFFV 463 (482)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~ 463 (482)
.+|..++...|+++.++++++|+|
T Consensus 6 vVItGgILAtVILLcIIaVLCYCR 29 (143)
T PF15069_consen 6 VVITGGILATVILLCIIAVLCYCR 29 (143)
T ss_pred EEEechHHHHHHHHHHHHHHHHHh
Confidence 444444555555555555565555
No 133
>PRK01844 hypothetical protein; Provisional
Probab=33.78 E-value=38 Score=24.09 Aligned_cols=16 Identities=6% Similarity=-0.025 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHhhchh
Q 035547 450 VSFGAVVSPLMFFVHV 465 (482)
Q Consensus 450 ~~~~~~~~~~~~~~~~ 465 (482)
++++.+++.+++-+++
T Consensus 13 ~li~G~~~Gff~ark~ 28 (72)
T PRK01844 13 ALVAGVALGFFIARKY 28 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444333
No 134
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=33.30 E-value=58 Score=30.53 Aligned_cols=25 Identities=8% Similarity=0.110 Sum_probs=11.3
Q ss_pred eeeeehhhHHHHHHHHHHHHHhhch
Q 035547 440 FFIAISIGFAVSFGAVVSPLMFFVH 464 (482)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (482)
.++++++++++++++++++.+||+|
T Consensus 199 ~lv~Iv~~cvaG~aAliva~~cW~R 223 (341)
T PF06809_consen 199 TLVLIVVCCVAGAAALIVAGYCWYR 223 (341)
T ss_pred eeehhHHHHHHHHHHHHHhhheEEE
Confidence 3333444444444444444444444
No 135
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=32.47 E-value=28 Score=42.52 Aligned_cols=32 Identities=31% Similarity=0.277 Sum_probs=21.2
Q ss_pred ecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCccc
Q 035547 298 DLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFE 338 (482)
Q Consensus 298 ~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 338 (482)
||++|+|+...+..| ..+.+|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F---------~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGIC---------ANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHh---------ccCCCceEEEeeCCccc
Confidence 577787774444322 56677778888877775
No 136
>PTZ00046 rifin; Provisional
Probab=31.39 E-value=39 Score=32.52 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=15.5
Q ss_pred eeeehhhHHHHHHHHHHHHHhhchhH
Q 035547 441 FIAISIGFAVSFGAVVSPLMFFVHVK 466 (482)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (482)
+.+++++++|++++++.+++-|||++
T Consensus 319 aSiiAIvVIVLIMvIIYLILRYRRKK 344 (358)
T PTZ00046 319 ASIVAIVVIVLIMVIIYLILRYRRKK 344 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 33455666777776666666555543
No 137
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=30.95 E-value=68 Score=24.45 Aligned_cols=37 Identities=14% Similarity=0.101 Sum_probs=19.8
Q ss_pred CcceeeeeehhhHHHHHHHHHHHHHhhchhHHHHHHH
Q 035547 436 EIDWFFIAISIGFAVSFGAVVSPLMFFVHVKKWYNDL 472 (482)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (482)
....-.+.+.+|++++++++-+++.+..+=..||+.+
T Consensus 11 ~~~g~sW~~LVGVv~~al~~SlLIalaaKC~~~~k~~ 47 (102)
T PF15176_consen 11 GEGGRSWPFLVGVVVTALVTSLLIALAAKCPVWYKYL 47 (102)
T ss_pred CCCCcccHhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444566666666666665554444444444444443
No 138
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=30.72 E-value=41 Score=32.27 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=15.9
Q ss_pred eehhhHHHHHHHHHHHHHhhchhH
Q 035547 443 AISIGFAVSFGAVVSPLMFFVHVK 466 (482)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~ 466 (482)
+++++++|++++++.+++-|||++
T Consensus 316 iIAIvvIVLIMvIIYLILRYRRKK 339 (353)
T TIGR01477 316 IIAILIIVLIMVIIYLILRYRRKK 339 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 444555666677778887777654
No 139
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=29.67 E-value=24 Score=28.14 Aligned_cols=24 Identities=8% Similarity=-0.035 Sum_probs=11.7
Q ss_pred eehhhHHHHHHHHHHHHHhhchhH
Q 035547 443 AISIGFAVSFGAVVSPLMFFVHVK 466 (482)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~ 466 (482)
.+++++.+++++..+.++++++.|
T Consensus 104 ~~il~il~~i~is~~~~~~yr~~r 127 (139)
T PHA03099 104 PGIVLVLVGIIITCCLLSVYRFTR 127 (139)
T ss_pred hHHHHHHHHHHHHHHHHhhheeee
Confidence 344555555555555455554443
No 140
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=29.44 E-value=57 Score=31.78 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=11.1
Q ss_pred ehhhHHHHHHHHHHHHHhhchhHH
Q 035547 444 ISIGFAVSFGAVVSPLMFFVHVKK 467 (482)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~ 467 (482)
.++++++++++++++++++++.++
T Consensus 302 ~v~~~~vli~vl~~~~~~~~~~~~ 325 (361)
T PF12259_consen 302 AVCGAIVLIIVLISLAWLYRTFRR 325 (361)
T ss_pred ehhHHHHHHHHHHHHHhheeehHH
Confidence 334444444445455555554433
No 141
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=28.97 E-value=35 Score=29.83 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=9.9
Q ss_pred eeeeeehhhHHHHHHHHHHHHHhh
Q 035547 439 WFFIAISIGFAVSFGAVVSPLMFF 462 (482)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~ 462 (482)
+..+++++-++++++++++.++++
T Consensus 157 ~~~laI~lPvvv~~~~~~~~~~~~ 180 (189)
T PF14610_consen 157 KYALAIALPVVVVVLALIMYGFFF 180 (189)
T ss_pred ceeEEEEccHHHHHHHHHHHhhhe
Confidence 444444444444443333333333
No 142
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=28.19 E-value=1.8e+02 Score=22.84 Aligned_cols=24 Identities=13% Similarity=0.033 Sum_probs=9.9
Q ss_pred eeeehhhH-HHHHHHHHHHHHhhch
Q 035547 441 FIAISIGF-AVSFGAVVSPLMFFVH 464 (482)
Q Consensus 441 ~~~~~~~~-~~~~~~~~~~~~~~~~ 464 (482)
.+.+++|. .++.+.+++.....+|
T Consensus 85 aLp~VIGGLcaL~LaamGA~~LLrR 109 (126)
T PF03229_consen 85 ALPLVIGGLCALTLAAMGAGALLRR 109 (126)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33444443 3334444444444333
No 143
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=27.75 E-value=61 Score=26.33 Aligned_cols=20 Identities=10% Similarity=0.104 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHHHHHhhchh
Q 035547 446 IGFAVSFGAVVSPLMFFVHV 465 (482)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~ 465 (482)
+++++.++++++.+++|.+|
T Consensus 36 iaIvVliiiiivli~lcssR 55 (189)
T PF05568_consen 36 IAIVVLIIIIIVLIYLCSSR 55 (189)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 33334444444444444333
No 144
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=26.59 E-value=57 Score=27.08 Aligned_cols=22 Identities=14% Similarity=0.073 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHhhchhHHH
Q 035547 447 GFAVSFGAVVSPLMFFVHVKKW 468 (482)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~ 468 (482)
+++.++++++++.+|..-|+.|
T Consensus 123 ~~i~g~ll~i~~giy~~~r~~~ 144 (145)
T PF10661_consen 123 LSIGGILLAICGGIYVVLRKVW 144 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444444445554444444
No 145
>PF15345 TMEM51: Transmembrane protein 51
Probab=26.55 E-value=2.3e+02 Score=25.50 Aligned_cols=27 Identities=4% Similarity=0.025 Sum_probs=11.1
Q ss_pred eeehhhHHHHHHHHHHHHHhhchhHHH
Q 035547 442 IAISIGFAVSFGAVVSPLMFFVHVKKW 468 (482)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (482)
.++.|.+.+++++++.-++...|.|++
T Consensus 59 SVAyVLVG~Gv~LLLLSICL~IR~KRr 85 (233)
T PF15345_consen 59 SVAYVLVGSGVALLLLSICLSIRDKRR 85 (233)
T ss_pred EEEEehhhHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444333
No 146
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=24.94 E-value=24 Score=32.29 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=0.0
Q ss_pred eeehhhHHHHHHHHHHHHHhhchhHH
Q 035547 442 IAISIGFAVSFGAVVSPLMFFVHVKK 467 (482)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (482)
..+.|..++++++.++.++||+++++
T Consensus 228 f~lLVPSiILVLLaVGGLLfYr~rrR 253 (285)
T PF05337_consen 228 FYLLVPSIILVLLAVGGLLFYRRRRR 253 (285)
T ss_dssp --------------------------
T ss_pred ccccccchhhhhhhccceeeeccccc
Confidence 33444445555666666676666544
No 147
>PF10808 DUF2542: Protein of unknown function (DUF2542) ; InterPro: IPR020155 This entry represents transmembrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=24.31 E-value=89 Score=22.30 Aligned_cols=31 Identities=13% Similarity=0.097 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHhhhhhc
Q 035547 451 SFGAVVSPLMFFVHVKKWYNDLIYKFIYRRF 481 (482)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (482)
..+..+.+++++-.||.|+---++|..+..+
T Consensus 10 ~~~lmi~~f~fREa~KgwRsGaVdK~vkna~ 40 (79)
T PF10808_consen 10 IAFLMIPLFCFREAWKGWRSGAVDKIVKNAQ 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHhcCCC
Confidence 3344455566677788888888888776543
No 148
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=24.31 E-value=37 Score=28.92 Aligned_cols=26 Identities=12% Similarity=-0.146 Sum_probs=10.4
Q ss_pred hhhHHHHHHHHHHHHHhhchhHHHHH
Q 035547 445 SIGFAVSFGAVVSPLMFFVHVKKWYN 470 (482)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (482)
||++++++++-++.-++-|.+|+.+|
T Consensus 120 Ivsav~valvGAvsSyiaYqkKKlCF 145 (169)
T PF12301_consen 120 IVSAVVVALVGAVSSYIAYQKKKLCF 145 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccce
Confidence 33333333333333334444445555
No 149
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=24.02 E-value=26 Score=29.33 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=0.0
Q ss_pred eeeeeehhhHHHHHHHHHHHHHhhchh-HHHH
Q 035547 439 WFFIAISIGFAVSFGAVVSPLMFFVHV-KKWY 469 (482)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 469 (482)
..++++++++++++.++.+++++..|+ .-||
T Consensus 129 ~tLVGIIVGVLlaIG~igGIIivvvRKmSGRy 160 (162)
T PF05808_consen 129 VTLVGIIVGVLLAIGFIGGIIIVVVRKMSGRY 160 (162)
T ss_dssp --------------------------------
T ss_pred eeeeeehhhHHHHHHHHhheeeEEeehhcccc
Confidence 345566666666666666655555554 3444
No 150
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.08 E-value=78 Score=29.27 Aligned_cols=16 Identities=6% Similarity=-0.060 Sum_probs=6.6
Q ss_pred HHhhchhHHHHHHHHH
Q 035547 459 LMFFVHVKKWYNDLIY 474 (482)
Q Consensus 459 ~~~~~~~~~~~~~~~~ 474 (482)
++..+-|-+++++.-|
T Consensus 275 liiLYiWlyrrRK~sw 290 (295)
T TIGR01478 275 LIILYIWLYRRRKKSW 290 (295)
T ss_pred HHHHHHHHHHhhcccc
Confidence 3333444444444444
Done!