Query 035547
Match_columns 482
No_of_seqs 295 out of 4043
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 05:54:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035547.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035547hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.9E-51 6.7E-56 440.0 32.4 311 99-423 369-753 (768)
2 3rgz_A Protein brassinosteroid 100.0 9.2E-48 3.1E-52 411.6 29.9 400 1-409 209-717 (768)
3 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-46 4.2E-51 406.9 27.6 396 1-413 33-564 (844)
4 3t6q_A CD180 antigen; protein- 100.0 1.4E-45 5E-50 385.5 28.8 405 1-412 42-563 (606)
5 3vq2_A TLR4, TOLL-like recepto 100.0 9.9E-45 3.4E-49 379.2 30.9 386 1-413 41-562 (606)
6 4eco_A Uncharacterized protein 100.0 3.3E-44 1.1E-48 375.7 24.8 381 1-412 90-603 (636)
7 3t6q_A CD180 antigen; protein- 100.0 5E-43 1.7E-47 366.3 32.6 376 2-391 91-565 (606)
8 2z63_A TOLL-like receptor 4, v 100.0 9E-43 3.1E-47 361.7 30.2 388 1-413 37-535 (570)
9 1ziw_A TOLL-like receptor 3; i 100.0 5.7E-42 1.9E-46 363.1 35.1 407 2-413 83-626 (680)
10 4eco_A Uncharacterized protein 100.0 2.8E-43 9.4E-48 368.8 23.1 355 1-388 192-602 (636)
11 4ecn_A Leucine-rich repeat pro 100.0 8.8E-43 3E-47 371.5 25.8 380 1-410 332-841 (876)
12 3vq2_A TLR4, TOLL-like recepto 100.0 1.8E-41 6E-46 354.5 31.7 274 99-392 286-564 (606)
13 2z81_A CD282 antigen, TOLL-lik 100.0 1E-41 3.5E-46 352.2 27.2 379 1-413 35-514 (549)
14 1ziw_A TOLL-like receptor 3; i 100.0 8.6E-41 2.9E-45 354.0 34.9 375 1-387 34-518 (680)
15 3v47_A TOLL-like receptor 5B a 100.0 1.4E-40 4.9E-45 335.5 30.3 362 6-394 23-416 (455)
16 4ecn_A Leucine-rich repeat pro 100.0 1.8E-41 6.3E-46 361.3 24.7 362 1-389 434-843 (876)
17 2z63_A TOLL-like receptor 4, v 100.0 2.4E-41 8.3E-46 350.9 25.1 374 1-395 61-540 (570)
18 2z7x_B TOLL-like receptor 1, v 100.0 1.9E-41 6.6E-46 347.7 22.0 377 1-411 9-483 (520)
19 3j0a_A TOLL-like receptor 5; m 100.0 5.5E-41 1.9E-45 362.8 25.4 381 7-408 18-538 (844)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.4E-40 1.1E-44 341.4 25.0 353 1-389 40-513 (562)
21 4g8a_A TOLL-like receptor 4; l 100.0 2.1E-39 7.3E-44 340.5 29.8 209 191-412 369-583 (635)
22 2z7x_B TOLL-like receptor 1, v 100.0 8.1E-40 2.8E-44 335.6 24.7 357 1-390 30-485 (520)
23 3v47_A TOLL-like receptor 5B a 100.0 9E-39 3.1E-43 322.3 28.7 346 1-366 39-412 (455)
24 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-38 3.8E-43 329.4 29.6 365 1-391 59-515 (549)
25 4g8a_A TOLL-like receptor 4; l 100.0 2.2E-38 7.6E-43 332.7 28.9 208 169-389 371-583 (635)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.2E-38 1.4E-42 325.7 26.3 334 1-365 61-513 (562)
27 1jl5_A Outer protein YOPM; leu 100.0 3.5E-38 1.2E-42 316.3 21.0 329 2-387 21-371 (454)
28 2id5_A Lingo-1, leucine rich r 100.0 2.9E-37 9.9E-42 313.2 27.6 315 19-362 14-333 (477)
29 1o6v_A Internalin A; bacterial 100.0 1.1E-36 3.9E-41 307.6 30.8 326 12-387 64-389 (466)
30 1o6v_A Internalin A; bacterial 100.0 4.9E-36 1.7E-40 303.0 30.5 346 14-410 44-389 (466)
31 3o6n_A APL1; leucine-rich repe 100.0 2.2E-36 7.7E-41 298.5 27.3 332 14-412 43-377 (390)
32 2id5_A Lingo-1, leucine rich r 100.0 5.8E-36 2E-40 303.6 26.1 336 6-370 24-364 (477)
33 4fmz_A Internalin; leucine ric 100.0 5.6E-35 1.9E-39 283.9 30.2 305 14-386 42-346 (347)
34 3oja_B Anopheles plasmodium-re 100.0 2.1E-35 7.3E-40 307.2 27.9 333 14-413 49-384 (597)
35 1jl5_A Outer protein YOPM; leu 100.0 6.9E-35 2.4E-39 292.4 23.9 339 14-410 9-371 (454)
36 3bz5_A Internalin-J, INLJ; leu 100.0 2.3E-34 7.9E-39 288.8 26.4 343 4-392 30-393 (457)
37 3bz5_A Internalin-J, INLJ; leu 100.0 3.2E-34 1.1E-38 287.8 26.3 312 25-387 27-353 (457)
38 1xku_A Decorin; proteoglycan, 100.0 5.3E-33 1.8E-37 268.0 27.6 266 99-384 53-330 (330)
39 4fmz_A Internalin; leucine ric 100.0 2E-32 6.7E-37 266.0 29.0 307 35-408 39-345 (347)
40 3o6n_A APL1; leucine-rich repe 100.0 4.7E-33 1.6E-37 274.7 23.0 309 39-411 44-354 (390)
41 1xku_A Decorin; proteoglycan, 100.0 3.6E-32 1.2E-36 262.2 28.0 267 16-302 52-329 (330)
42 1ogq_A PGIP-2, polygalacturona 100.0 9.4E-34 3.2E-38 270.8 16.3 195 184-418 116-312 (313)
43 2ft3_A Biglycan; proteoglycan, 100.0 9.5E-33 3.2E-37 266.4 21.6 248 116-384 74-331 (332)
44 2ft3_A Biglycan; proteoglycan, 100.0 2.2E-32 7.6E-37 263.8 22.9 284 17-336 34-331 (332)
45 3oja_B Anopheles plasmodium-re 100.0 8.5E-33 2.9E-37 287.6 20.7 309 39-411 50-360 (597)
46 1ogq_A PGIP-2, polygalacturona 100.0 2.2E-32 7.5E-37 261.3 17.4 247 98-385 50-303 (313)
47 1z7x_W Ribonuclease inhibitor; 100.0 1.3E-34 4.3E-39 292.5 1.4 360 16-388 3-413 (461)
48 1z7x_W Ribonuclease inhibitor; 100.0 2.5E-33 8.5E-38 283.0 0.2 362 12-387 24-441 (461)
49 2z66_A Variable lymphocyte rec 100.0 1.8E-29 6.1E-34 240.6 20.2 250 102-390 11-265 (306)
50 3zyi_A Leucine-rich repeat-con 100.0 1.3E-28 4.5E-33 247.6 26.4 249 100-390 56-307 (452)
51 2z80_A TOLL-like receptor 2, v 100.0 5.9E-30 2E-34 249.0 13.9 281 60-391 28-319 (353)
52 3zyj_A Leucine-rich repeat-con 100.0 2.3E-28 7.7E-33 245.0 25.5 248 100-389 45-295 (440)
53 2z66_A Variable lymphocyte rec 100.0 9.2E-29 3.1E-33 235.7 17.9 178 98-279 28-212 (306)
54 3g06_A SSPH2 (leucine-rich rep 100.0 2.1E-27 7.1E-32 245.4 27.8 223 98-368 81-303 (622)
55 1ozn_A Reticulon 4 receptor; N 100.0 9.5E-29 3.2E-33 233.1 16.3 249 123-412 14-264 (285)
56 3g06_A SSPH2 (leucine-rich rep 100.0 1.7E-27 5.8E-32 246.0 26.3 269 16-349 40-308 (622)
57 2z80_A TOLL-like receptor 2, v 100.0 3.1E-28 1.1E-32 236.9 18.5 277 11-309 26-318 (353)
58 4fcg_A Uncharacterized protein 100.0 5.1E-28 1.8E-32 232.4 19.7 233 98-386 81-314 (328)
59 3zyi_A Leucine-rich repeat-con 100.0 2.4E-27 8E-32 238.4 23.8 248 149-413 57-307 (452)
60 3zyj_A Leucine-rich repeat-con 100.0 2.7E-27 9.3E-32 237.1 23.2 229 170-412 65-295 (440)
61 1ozn_A Reticulon 4 receptor; N 100.0 2.9E-27 9.9E-32 222.9 19.9 197 102-305 15-214 (285)
62 4fcg_A Uncharacterized protein 100.0 1.4E-27 4.6E-32 229.5 17.5 234 61-362 79-314 (328)
63 3o53_A Protein LRIM1, AGAP0063 99.9 5.4E-29 1.8E-33 238.4 5.8 241 98-390 34-280 (317)
64 3o53_A Protein LRIM1, AGAP0063 99.9 8.7E-29 3E-33 236.9 5.2 240 10-274 28-270 (317)
65 1wwl_A Monocyte differentiatio 99.9 5.7E-28 2E-32 230.7 4.4 251 116-386 39-309 (312)
66 1wwl_A Monocyte differentiatio 99.9 1.7E-27 5.9E-32 227.3 7.6 242 99-363 44-310 (312)
67 3oja_A Leucine-rich immune mol 99.9 5.9E-27 2E-31 237.0 10.5 150 193-386 99-250 (487)
68 3ogk_B Coronatine-insensitive 99.9 1.4E-28 4.8E-33 256.1 -2.6 355 14-388 110-528 (592)
69 3oja_A Leucine-rich immune mol 99.9 1.4E-26 4.6E-31 234.4 9.6 236 14-299 32-269 (487)
70 2z62_A TOLL-like receptor 4, v 99.9 8.4E-25 2.9E-29 205.0 20.1 39 40-78 28-67 (276)
71 2z62_A TOLL-like receptor 4, v 99.9 7.3E-25 2.5E-29 205.4 19.6 212 171-392 30-243 (276)
72 1p9a_G Platelet glycoprotein I 99.9 4.9E-24 1.7E-28 200.9 19.7 205 116-388 6-210 (290)
73 2o6q_A Variable lymphocyte rec 99.9 7.5E-24 2.6E-28 197.8 19.6 204 148-390 18-222 (270)
74 2o6q_A Variable lymphocyte rec 99.9 2.7E-23 9.4E-28 194.0 22.3 201 100-308 18-221 (270)
75 3goz_A Leucine-rich repeat-con 99.9 8.4E-25 2.9E-29 213.2 9.1 124 186-309 159-301 (362)
76 3goz_A Leucine-rich repeat-con 99.9 1.2E-24 4.3E-29 212.0 7.7 44 116-161 46-95 (362)
77 3rfs_A Internalin B, repeat mo 99.9 3.7E-24 1.3E-28 200.1 10.6 224 102-374 23-247 (272)
78 1p9a_G Platelet glycoprotein I 99.9 7.6E-23 2.6E-27 192.7 19.5 200 12-279 6-208 (290)
79 2xwt_C Thyrotropin receptor; s 99.9 4.7E-23 1.6E-27 188.8 15.3 185 6-206 24-218 (239)
80 3ogk_B Coronatine-insensitive 99.9 1.5E-24 5E-29 225.8 5.9 272 98-383 243-548 (592)
81 3rfs_A Internalin B, repeat mo 99.9 1.9E-22 6.4E-27 188.5 18.8 187 189-391 37-223 (272)
82 3m19_A Variable lymphocyte rec 99.9 6.7E-23 2.3E-27 189.1 15.0 212 193-421 14-232 (251)
83 2ast_B S-phase kinase-associat 99.9 1.2E-23 4E-28 203.1 10.3 250 121-392 48-312 (336)
84 2p1m_B Transport inhibitor res 99.9 5.6E-25 1.9E-29 229.0 0.1 350 14-386 103-519 (594)
85 2ca6_A RAN GTPase-activating p 99.9 3.8E-23 1.3E-27 203.4 12.4 257 111-390 22-320 (386)
86 2p1m_B Transport inhibitor res 99.9 2E-25 6.9E-30 232.4 -4.3 362 2-386 115-544 (594)
87 2ca6_A RAN GTPase-activating p 99.9 5.1E-24 1.8E-28 209.6 5.5 239 97-365 31-319 (386)
88 1h6u_A Internalin H; cell adhe 99.9 4.2E-22 1.4E-26 189.4 17.3 150 189-362 81-230 (308)
89 2xwt_C Thyrotropin receptor; s 99.9 1.9E-22 6.5E-27 184.7 13.8 195 170-383 32-236 (239)
90 4glp_A Monocyte differentiatio 99.9 4.6E-23 1.6E-27 196.5 8.0 160 120-305 91-264 (310)
91 1h6u_A Internalin H; cell adhe 99.9 1.6E-21 5.3E-26 185.5 17.5 168 99-280 42-209 (308)
92 4glp_A Monocyte differentiatio 99.9 3.3E-22 1.1E-26 190.5 12.1 207 191-409 89-307 (310)
93 2ast_B S-phase kinase-associat 99.9 1E-22 3.5E-27 196.4 8.4 233 98-371 70-315 (336)
94 3m19_A Variable lymphocyte rec 99.9 7.9E-21 2.7E-25 175.2 18.8 179 98-307 14-194 (251)
95 4ay9_X Follicle-stimulating ho 99.9 4.8E-21 1.6E-25 185.6 15.9 199 66-281 12-217 (350)
96 4ay9_X Follicle-stimulating ho 99.8 1.7E-20 5.7E-25 181.8 16.4 219 16-276 30-256 (350)
97 2v70_A SLIT-2, SLIT homolog 2 99.8 3.5E-21 1.2E-25 173.7 10.1 156 222-390 14-170 (220)
98 2v9t_B SLIT homolog 2 protein 99.8 4.2E-21 1.4E-25 173.2 10.1 153 223-388 15-167 (220)
99 3cvr_A Invasion plasmid antige 99.8 2.4E-20 8.3E-25 190.3 15.3 187 41-265 60-253 (571)
100 2o6s_A Variable lymphocyte rec 99.8 3.2E-20 1.1E-24 166.0 13.9 151 149-305 10-161 (208)
101 3e6j_A Variable lymphocyte rec 99.8 1.9E-19 6.6E-24 163.4 15.2 157 220-390 20-176 (229)
102 2xot_A Amphoterin-induced prot 99.8 5.8E-20 2E-24 178.8 11.6 177 196-388 21-204 (361)
103 1h6t_A Internalin B; cell adhe 99.8 5E-19 1.7E-23 166.7 15.5 123 18-160 26-148 (291)
104 3cvr_A Invasion plasmid antige 99.8 5.3E-19 1.8E-23 180.4 16.4 55 192-255 139-193 (571)
105 2o6s_A Variable lymphocyte rec 99.8 1E-18 3.5E-23 156.2 15.8 173 196-391 10-183 (208)
106 1h6t_A Internalin B; cell adhe 99.8 1.8E-18 6.3E-23 162.8 16.7 168 98-279 46-213 (291)
107 2v9t_B SLIT homolog 2 protein 99.8 3.2E-18 1.1E-22 154.3 16.8 157 150-312 15-172 (220)
108 4ezg_A Putative uncharacterize 99.8 2.8E-18 9.4E-23 152.0 13.9 150 220-387 45-195 (197)
109 1xeu_A Internalin C; cellular 99.8 4.4E-19 1.5E-23 164.5 8.5 170 192-388 18-187 (263)
110 3e6j_A Variable lymphocyte rec 99.8 6.9E-18 2.3E-22 153.1 16.2 154 100-308 21-175 (229)
111 2xot_A Amphoterin-induced prot 99.8 2.4E-18 8.2E-23 167.3 14.0 154 99-279 40-202 (361)
112 2v70_A SLIT-2, SLIT homolog 2 99.8 1E-17 3.5E-22 150.9 17.0 136 173-312 36-173 (220)
113 1m9s_A Internalin B; cell inva 99.8 2.5E-18 8.5E-23 177.4 14.2 191 16-256 21-211 (605)
114 1m9s_A Internalin B; cell inva 99.8 8.3E-18 2.8E-22 173.5 16.5 170 98-281 43-212 (605)
115 1w8a_A SLIT protein; signaling 99.8 1.5E-18 5.3E-23 152.9 9.3 133 221-390 10-143 (192)
116 4b8c_D Glucose-repressible alc 99.8 1.4E-18 4.8E-23 183.6 10.1 224 120-386 173-404 (727)
117 1xeu_A Internalin C; cellular 99.7 3.1E-18 1E-22 158.8 10.5 169 98-307 19-187 (263)
118 1dce_A Protein (RAB geranylger 99.7 8.1E-21 2.8E-25 194.7 -8.7 184 13-207 346-547 (567)
119 4ezg_A Putative uncharacterize 99.7 1.3E-17 4.5E-22 147.6 12.5 150 119-278 43-193 (197)
120 3sb4_A Hypothetical leucine ri 99.7 2.7E-18 9.4E-23 164.8 8.5 299 6-332 13-328 (329)
121 1dce_A Protein (RAB geranylger 99.7 2.8E-19 9.5E-24 183.4 0.9 216 117-380 346-567 (567)
122 1w8a_A SLIT protein; signaling 99.7 6.9E-18 2.4E-22 148.7 9.3 107 196-309 11-119 (192)
123 4b8c_D Glucose-repressible alc 99.7 8.6E-18 3E-22 177.6 7.0 179 41-231 174-353 (727)
124 2wfh_A SLIT homolog 2 protein 99.7 5.6E-17 1.9E-21 142.8 10.1 129 222-388 13-141 (193)
125 3sb4_A Hypothetical leucine ri 99.7 9.8E-17 3.4E-21 153.9 10.9 284 38-379 23-327 (329)
126 2ell_A Acidic leucine-rich nuc 99.7 3.2E-16 1.1E-20 134.8 11.6 134 241-387 23-161 (168)
127 2o6r_A Variable lymphocyte rec 99.6 1.1E-15 3.7E-20 132.7 12.8 134 220-390 8-141 (177)
128 2je0_A Acidic leucine-rich nuc 99.6 4.2E-16 1.4E-20 131.3 9.6 128 242-382 17-149 (149)
129 2ell_A Acidic leucine-rich nuc 99.6 1.9E-15 6.4E-20 130.0 12.0 133 120-281 24-162 (168)
130 2wfh_A SLIT homolog 2 protein 99.6 2.6E-15 9E-20 132.1 12.9 104 196-306 13-116 (193)
131 4fdw_A Leucine rich hypothetic 99.6 4.5E-14 1.5E-18 138.5 21.7 200 116-338 176-383 (401)
132 2je0_A Acidic leucine-rich nuc 99.6 2.5E-15 8.4E-20 126.5 10.7 84 189-274 60-148 (149)
133 4fdw_A Leucine rich hypothetic 99.6 6.4E-14 2.2E-18 137.4 20.9 263 15-305 112-383 (401)
134 4fs7_A Uncharacterized protein 99.6 1.1E-13 3.6E-18 136.2 21.1 306 11-382 66-375 (394)
135 1a9n_A U2A', U2A'; complex (nu 99.6 6.7E-15 2.3E-19 127.6 10.1 133 238-386 15-153 (176)
136 2o6r_A Variable lymphocyte rec 99.5 4.4E-14 1.5E-18 122.5 13.2 113 193-309 28-141 (177)
137 1a9n_A U2A', U2A'; complex (nu 99.5 2.6E-14 9E-19 123.8 9.9 133 116-280 15-154 (176)
138 1ds9_A Outer arm dynein; leuci 99.5 6.3E-16 2.1E-20 136.8 -1.6 161 189-386 14-185 (198)
139 4fs7_A Uncharacterized protein 99.5 4.7E-13 1.6E-17 131.5 18.1 293 28-383 59-353 (394)
140 1ds9_A Outer arm dynein; leuci 99.5 1E-15 3.4E-20 135.5 -3.4 154 119-305 17-185 (198)
141 3g39_A Variable lymphocyte rec 99.5 2.3E-13 7.9E-18 117.0 10.1 109 244-390 11-119 (170)
142 3g39_A Variable lymphocyte rec 99.4 1.4E-12 4.7E-17 112.1 12.7 108 195-309 11-119 (170)
143 2r9u_A Variable lymphocyte rec 99.4 6.6E-13 2.3E-17 114.5 10.2 108 245-390 15-122 (174)
144 2r9u_A Variable lymphocyte rec 99.4 1.2E-12 4.1E-17 112.9 10.5 105 196-307 15-120 (174)
145 3un9_A NLR family member X1; l 99.4 9.1E-14 3.1E-18 134.9 2.5 168 192-364 71-254 (372)
146 3un9_A NLR family member X1; l 99.3 6.2E-13 2.1E-17 129.1 4.5 60 220-279 184-252 (372)
147 4gt6_A Cell surface protein; l 99.3 3.1E-10 1E-14 111.4 22.5 312 11-384 58-389 (394)
148 2ifg_A High affinity nerve gro 99.2 2.7E-11 9.3E-16 116.8 10.2 104 246-387 12-117 (347)
149 2ifg_A High affinity nerve gro 99.2 4E-11 1.4E-15 115.6 10.0 111 196-313 11-124 (347)
150 4gt6_A Cell surface protein; l 99.2 3.5E-09 1.2E-13 103.8 23.8 303 10-361 81-390 (394)
151 4h09_A Hypothetical leucine ri 99.1 8.4E-09 2.9E-13 100.5 21.5 58 323-381 284-341 (379)
152 2ra8_A Uncharacterized protein 99.0 9.2E-10 3.1E-14 105.9 8.2 185 188-384 134-341 (362)
153 4h09_A Hypothetical leucine ri 98.8 4.2E-07 1.5E-11 88.4 22.2 299 12-349 42-356 (379)
154 1io0_A Tropomodulin; LRR prote 98.7 7.8E-09 2.7E-13 89.7 3.2 45 235-279 29-78 (185)
155 1io0_A Tropomodulin; LRR prote 98.6 1.4E-08 4.8E-13 88.1 3.8 86 220-305 37-136 (185)
156 2ra8_A Uncharacterized protein 98.6 6.5E-08 2.2E-12 92.9 7.6 142 140-305 168-320 (362)
157 3rw6_A Nuclear RNA export fact 98.3 2.8E-07 9.7E-12 84.0 4.8 84 224-309 148-237 (267)
158 3rw6_A Nuclear RNA export fact 98.2 1.7E-06 6E-11 78.8 6.5 59 220-280 171-234 (267)
159 1pgv_A TMD-1, tropomodulin TMD 97.8 2E-05 6.8E-10 67.9 4.7 101 236-338 64-170 (197)
160 3e4g_A ATP synthase subunit S, 97.7 1.1E-05 3.8E-10 68.2 2.5 86 266-362 61-153 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 9.3E-05 3.2E-09 63.7 6.2 68 237-304 93-169 (197)
162 3e4g_A ATP synthase subunit S, 97.6 2.6E-05 8.7E-10 66.0 2.6 85 291-384 60-150 (176)
163 3rfe_A Platelet glycoprotein I 97.1 0.00086 2.9E-08 53.8 6.3 55 223-279 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.9 0.0015 5.2E-08 52.3 6.1 57 329-387 12-69 (130)
165 2knc_B Integrin beta-3; transm 80.9 1.6 5.5E-05 30.8 3.7 14 466-479 41-54 (79)
166 2k1k_A Ephrin type-A receptor 77.6 0.67 2.3E-05 27.6 0.7 21 441-461 13-33 (38)
167 1iij_A ERBB-2 receptor protein 59.1 1 3.5E-05 26.0 -1.2 6 458-463 27-32 (35)
168 2l9u_A Receptor tyrosine-prote 56.2 9 0.00031 21.7 2.3 21 445-465 13-33 (40)
169 2l6w_A Beta-type platelet-deri 60.6 2.4 8.4E-05 24.9 0.0 16 454-469 23-38 (39)
170 2lz0_A Uncharacterized protein 48.2 20 0.0007 26.4 4.1 45 27-72 7-52 (100)
171 2lz0_A Uncharacterized protein 45.7 30 0.001 25.5 4.7 41 10-51 14-54 (100)
172 2klu_A T-cell surface glycopro 37.1 2 6.7E-05 28.6 -2.6 18 444-461 12-29 (70)
173 2k9j_B Integrin beta-3; transm 33.3 38 0.0013 20.5 2.9 6 453-458 20-25 (43)
174 2l34_A TYRO protein tyrosine k 28.2 35 0.0012 19.4 1.9 18 445-462 13-30 (33)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.9e-51 Score=440.03 Aligned_cols=311 Identities=27% Similarity=0.360 Sum_probs=251.5
Q ss_pred cccEEEccCCCCC-CCCC-CCC--CCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCC-CCCCccE
Q 035547 99 SFSKLRLASSKPW-VIPI-LKN--QSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYH-ISGRTYS 173 (482)
Q Consensus 99 ~L~~L~l~~n~l~-~l~~-~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~-~~~~l~~ 173 (482)
+|+.|++++|.+. .+|. +.. +++|++|++++|++++.+|..+..++. |++|++++|++++..+..+ .+++|+.
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 446 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE--LVSLHLSFNYLSGTIPSSLGSLSKLRD 446 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTT--CCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCC--CCEEECcCCcccCcccHHHhcCCCCCE
Confidence 5555555555554 3333 333 667777777777777777777777777 8888888887775443333 6778888
Q ss_pred EEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCC-chhhhcccCCCCCEEeCCCc
Q 035547 174 FSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLG-VVLKSLANCNMLQVLDLRNN 252 (482)
Q Consensus 174 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~Ls~N 252 (482)
|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+.... +|++|++++|.+. .+|.++..+++|++|++++|
T Consensus 447 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~--~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 524 (768)
T 3rgz_A 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT--NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT--TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred EECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCC--CCCEEEccCCccCCcCChHHhcCCCCCEEECCCC
Confidence 88888888877788888888888888888888877787777666 8888888888885 67777888888888888888
Q ss_pred ccCCCcChhhhcCCCCcEEEcccCccccccCC------------------------------------------------
Q 035547 253 HISDNFPCWLRNAFSLQVLVFRSNNFSERISC------------------------------------------------ 284 (482)
Q Consensus 253 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~------------------------------------------------ 284 (482)
.+.+..|..+..+++|++|++++|.+.+.+|.
T Consensus 525 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (768)
T 3rgz_A 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604 (768)
T ss_dssp CCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGG
T ss_pred cccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhh
Confidence 88877788888888888888888877654421
Q ss_pred --------------------CCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHh
Q 035547 285 --------------------PRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEE 344 (482)
Q Consensus 285 --------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 344 (482)
+..+..+++|++|||++|.++|.+|..+ ..++.|+.|+|++|.+++.+|..
T Consensus 605 ~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l---------~~l~~L~~L~Ls~N~l~g~ip~~ 675 (768)
T 3rgz_A 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI---------GSMPYLFILNLGHNDISGSIPDE 675 (768)
T ss_dssp GGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG---------GGCTTCCEEECCSSCCCSCCCGG
T ss_pred hccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH---------hccccCCEEeCcCCccCCCCChH
Confidence 2235567889999999999999999765 68999999999999999999999
Q ss_pred hhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCccccCCCCcccCcCCCCcccCCCCCCCCCCCCCCCCCCC
Q 035547 345 MGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQSFLPTSYEGNKGLYIPPLTNDIQTHPP 423 (482)
Q Consensus 345 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~~~~~~~~~c~~~~~ 423 (482)
++++++|+.|+|++|++++.+|..+..+++|++||+++|+++|.+|...++.++....+.|||.+|+.|.. .|.....
T Consensus 676 l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~ 753 (768)
T 3rgz_A 676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNA 753 (768)
T ss_dssp GGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-
T ss_pred HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 7866543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.2e-48 Score=411.61 Aligned_cols=400 Identities=28% Similarity=0.418 Sum_probs=308.6
Q ss_pred CCcceecCCcCCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCc----
Q 035547 1 NTSFLGTLPDSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLN---- 76 (482)
Q Consensus 1 ~n~~~g~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~---- 76 (482)
+|++.+.+|. ++.+++|++|++++|.+++..|..|+++++|++|++++|.+.+..|.. .+++|++|++++|+++
T Consensus 209 ~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip 286 (768)
T 3rgz_A 209 SNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIP 286 (768)
T ss_dssp SSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCC
T ss_pred CCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccC
Confidence 4677777776 888888888888888888877888888888888888888887766654 7788888888887654
Q ss_pred -----------ccccCCCCcccccCCCCCcCCccccEEEccCCCCC-CCCC--CCCCCCCCEEEcccCcccccCChhhhh
Q 035547 77 -----------EIHLLSNNQFENQFPEISNMSSSFSKLRLASSKPW-VIPI--LKNQSQLSFFYISNNQISGEIPNWIWE 142 (482)
Q Consensus 77 -----------~l~~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 142 (482)
.+ ++++|.+.+.+|..+...++|+.|++++|.+. .+|. +.++++|++|++++|++++.+|..+..
T Consensus 287 ~~~~~~~~~L~~L-~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 365 (768)
T 3rgz_A 287 DFLSGACDTLTGL-DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 365 (768)
T ss_dssp CCSCTTCTTCSEE-ECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHH
T ss_pred HHHHhhcCcCCEE-ECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHh
Confidence 22 66777777777777766688888888888887 7775 788888888888888888788877777
Q ss_pred cC-CCCccEEeCCCCcccCC---------------------------CCCCCCCCCccEEEccCCcccccChhhhhcCCC
Q 035547 143 VG-GVNLYFLNLSQNLLVSL---------------------------QEPYHISGRTYSFSTINKSLIGFIPEYICKATY 194 (482)
Q Consensus 143 l~-~~~L~~L~L~~n~i~~~---------------------------~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~ 194 (482)
+. . |++|++++|+++.. +..+..+++|+.|++++|.+.+..|..+..+++
T Consensus 366 l~~~--L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 443 (768)
T 3rgz_A 366 LSAS--LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443 (768)
T ss_dssp HTTT--CSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred hhcC--CcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCC
Confidence 65 4 66666666655431 112224556666666666666666666666666
Q ss_pred CCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCC-chhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEc
Q 035547 195 FQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLG-VVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVF 273 (482)
Q Consensus 195 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 273 (482)
|+.|++++|.+.+.+|..+.... +|++|++++|.++ .+|..+..+++|++|++++|++++..|.+++.+++|++|++
T Consensus 444 L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 521 (768)
T 3rgz_A 444 LRDLKLWLNMLEGEIPQELMYVK--TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCT--TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCEEECCCCcccCcCCHHHcCCC--CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEEC
Confidence 66666666666666666666555 7778888887775 56778888888888888888888888888888888888888
Q ss_pred ccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHH-----------------------------------
Q 035547 274 RSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMI----------------------------------- 318 (482)
Q Consensus 274 ~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~----------------------------------- 318 (482)
++|++++.. +..++.+++|++|++++|.++|.+|..++.....
T Consensus 522 ~~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (768)
T 3rgz_A 522 SNNSFSGNI--PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599 (768)
T ss_dssp CSSCCEEEC--CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred CCCcccCcC--CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccc
Confidence 888888776 6778889999999999999988888765421000
Q ss_pred --------------------------HHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCC
Q 035547 319 --------------------------IQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNL 372 (482)
Q Consensus 319 --------------------------~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 372 (482)
..+..+++|+.|||++|++++.+|..++.+++|+.|+|++|++++.+|..+..+
T Consensus 600 ~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L 679 (768)
T 3rgz_A 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679 (768)
T ss_dssp CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC
Confidence 012235678999999999999999999999999999999999999999999999
Q ss_pred CCCCEEeCCCCCccccCCCC-cccCcCCCCcccCCCCC
Q 035547 373 KQIESLDLLMNNLMGKIPTS-TQLQSFLPTSYEGNKGL 409 (482)
Q Consensus 373 ~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~~ 409 (482)
++|++||+++|+++|.+|.. ..+..+..+++.+|+..
T Consensus 680 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 99999999999999999975 34566777778877543
No 3
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-46 Score=406.91 Aligned_cols=396 Identities=18% Similarity=0.120 Sum_probs=261.3
Q ss_pred CCcceecCCcCCCCCCCCCEEeCCCCcCCCCC-chhccCCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCccc
Q 035547 1 NTSFLGTLPDSIGTLENLTRVDLRSYNFTRPI-PTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLNEI 78 (482)
Q Consensus 1 ~n~~~g~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l 78 (482)
+|+|.+..|++|.++++|++|+|++|...+.+ |.+|+++++|++|+|++|.+.+..|+. ..+++|++|+|++|.++..
T Consensus 33 ~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 112 (844)
T 3j0a_A 33 FNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112 (844)
T ss_dssp SCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSC
T ss_pred CCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcc
Confidence 47788888888888888888888888555444 778888888888888888888877766 8888888888888877631
Q ss_pred ccCCCCcccccCCC--CCcCCccccEEEccCCCCCCCC--C-CCCCCCCCEEEcccCcccccCChhhhhc--CC------
Q 035547 79 HLLSNNQFENQFPE--ISNMSSSFSKLRLASSKPWVIP--I-LKNQSQLSFFYISNNQISGEIPNWIWEV--GG------ 145 (482)
Q Consensus 79 ~~l~~n~l~~~~p~--~~~~~~~L~~L~l~~n~l~~l~--~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~------ 145 (482)
+|. .+..+++|++|++++|.+..++ . |+++++|++|++++|.+++..+..+..+ ..
T Consensus 113 -----------~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 113 -----------VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp -----------CSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred -----------cccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 121 1333377777777777776442 2 7777777777777777776666655544 11
Q ss_pred ----------------------CCccEEeCCCCcccCCCCCC------------------------------------C-
Q 035547 146 ----------------------VNLYFLNLSQNLLVSLQEPY------------------------------------H- 166 (482)
Q Consensus 146 ----------------------~~L~~L~L~~n~i~~~~~~~------------------------------------~- 166 (482)
..|+.|++++|.++...... +
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 01445555554332111000 0
Q ss_pred --CCCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCch-hhhcccCCC
Q 035547 167 --ISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVV-LKSLANCNM 243 (482)
Q Consensus 167 --~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~ 243 (482)
..++++.|++++|.+.+..+..+..+++|+.|++++|++.+..|..+.... +|++|++++|.++.+ |..+..+++
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~~l~~ 339 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD--NLQVLNLSYNLLGELYSSNFYGLPK 339 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCS--SCCEEEEESCCCSCCCSCSCSSCTT
T ss_pred ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCC--CCCEEECCCCCCCccCHHHhcCCCC
Confidence 014566777777776666666667777777777777777666566665555 677777777776555 446666677
Q ss_pred CCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCC--------------------------------------
Q 035547 244 LQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCP-------------------------------------- 285 (482)
Q Consensus 244 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~-------------------------------------- 285 (482)
|+.|++++|.+.+..+..|..+++|++|++++|.+++....+
T Consensus 340 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~ 419 (844)
T 3j0a_A 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDIL 419 (844)
T ss_dssp CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTH
T ss_pred CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchh
Confidence 777777777776666666666666666666666655421000
Q ss_pred CCCCCCCCCCEEecCCCCCcccCCHHHHHH---------------------HHHHHhhcCCcceEEeCCCCcccccChHh
Q 035547 286 RNNVSWPLLKIVDLASNKFSGRLSQKWLLT---------------------MMIIQLKIPNIFTSIDCSSNNFEGPMPEE 344 (482)
Q Consensus 286 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~---------------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 344 (482)
..+..+++|++|+|++|.+++..+...... .....+..+++|++|+|++|.+++..|..
T Consensus 420 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 499 (844)
T 3j0a_A 420 YFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV 499 (844)
T ss_dssp HHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTS
T ss_pred hhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhH
Confidence 001245666666666666653222100000 00011245678888888888888888888
Q ss_pred hhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCccccCCCCcccCcCCCCcccCCCCCCCCC
Q 035547 345 MGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQSFLPTSYEGNKGLYIPP 413 (482)
Q Consensus 345 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~~~~~ 413 (482)
|.++++|+.|+|++|++++..+..+. ++|+.|++++|++++.+|.. +..+..+++.+||+.|.++
T Consensus 500 ~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 500 FSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECE 564 (844)
T ss_dssp SSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSS
T ss_pred ccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccc
Confidence 88888888888888888866555555 78888888888888877764 4577788899999999554
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-45 Score=385.47 Aligned_cols=405 Identities=16% Similarity=0.108 Sum_probs=272.4
Q ss_pred CCcceecCCcCCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCcccc
Q 035547 1 NTSFLGTLPDSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLNEIH 79 (482)
Q Consensus 1 ~n~~~g~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l~ 79 (482)
+|+|.+..|.+|+++++|++|+|++|.++++.|.+|+++++|++|++++|.+.+..+.. ..+++|++|++++|.++.+.
T Consensus 42 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~ 121 (606)
T 3t6q_A 42 FNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121 (606)
T ss_dssp TCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG
T ss_pred CCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCC
Confidence 47888888889999999999999999999988999999999999999999998887766 88999999999999887541
Q ss_pred -------------cCCCCccccc-CCCCCcCCccccEEEccCCCCCCCCC--CCCCCCCC--EEEcccCcccccCChh--
Q 035547 80 -------------LLSNNQFENQ-FPEISNMSSSFSKLRLASSKPWVIPI--LKNQSQLS--FFYISNNQISGEIPNW-- 139 (482)
Q Consensus 80 -------------~l~~n~l~~~-~p~~~~~~~~L~~L~l~~n~l~~l~~--~~~l~~L~--~L~Ls~n~l~~~~~~~-- 139 (482)
++++|.+.+. .|.... .++|+.|++++|.+..++. ++.+++|+ .|++++|.+++..|..
T Consensus 122 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~ 200 (606)
T 3t6q_A 122 FIPLHNQKTLESLYLGSNHISSIKLPKGFP-TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD 200 (606)
T ss_dssp GSCCTTCTTCCEEECCSSCCCCCCCCTTCC-CTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT
T ss_pred cchhccCCcccEEECCCCcccccCcccccC-CcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh
Confidence 6677777763 355555 4788888888888775543 66666666 6666666665443322
Q ss_pred -------------------------------------------------------------------------hhhcCCC
Q 035547 140 -------------------------------------------------------------------------IWEVGGV 146 (482)
Q Consensus 140 -------------------------------------------------------------------------~~~l~~~ 146 (482)
|..++.
T Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~- 279 (606)
T 3t6q_A 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG- 279 (606)
T ss_dssp TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTT-
T ss_pred hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccC-
Confidence 344444
Q ss_pred CccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChh-hhhcCcCccceEE
Q 035547 147 NLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPAC-LITKSSTTLGVLN 225 (482)
Q Consensus 147 ~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~~~L~~L~ 225 (482)
|++|++++|+++.+|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+|.. +.... +|++|+
T Consensus 280 -L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~--~L~~L~ 356 (606)
T 3t6q_A 280 -LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE--NLRELD 356 (606)
T ss_dssp -CSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT--TCCEEE
T ss_pred -CCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC--cCCEEE
Confidence 77788888877777776667778888888888887777777777778888888887776555543 44444 777777
Q ss_pred ccCCCCCch---hhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCC
Q 035547 226 LRRNNLGVV---LKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASN 302 (482)
Q Consensus 226 l~~n~l~~~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n 302 (482)
+++|.++.+ +..+..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+ +..+..+++|++|++++|
T Consensus 357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA-QSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT-CCTTTTCTTCCEEECTTC
T ss_pred CCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc-chhhhCcccCCEEECCCC
Confidence 777777555 4456667777777777777766666666666677777777766665432 233555555555555555
Q ss_pred CCcccCCHHHHHHHH------------------HHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCccc
Q 035547 303 KFSGRLSQKWLLTMM------------------IIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGS 364 (482)
Q Consensus 303 ~l~~~~~~~~~~~~~------------------~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 364 (482)
.+++..+..+..... ...+..+++|++|++++|.+++..|..|+.+++|++|+|++|++++.
T Consensus 436 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 515 (606)
T 3t6q_A 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515 (606)
T ss_dssp CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGG
T ss_pred ccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcC
Confidence 555444432210000 00123455555555555555555555566666666666666666655
Q ss_pred ccccccCCCCCCEEeCCCCCccccCCCC-cccCcCCCCcccCCCCCCCC
Q 035547 365 IPSSFGNLKQIESLDLLMNNLMGKIPTS-TQLQSFLPTSYEGNKGLYIP 412 (482)
Q Consensus 365 ~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~~~~~ 412 (482)
.|..+..+++| .|++++|++++.+|.. ..+..+..+++.+||+.|.+
T Consensus 516 ~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 516 SIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp GGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred ChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 55666666666 6666666666544432 23445566777777777643
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.9e-45 Score=379.16 Aligned_cols=386 Identities=18% Similarity=0.100 Sum_probs=300.0
Q ss_pred CCcceecCCcCCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCcccc
Q 035547 1 NTSFLGTLPDSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLNEIH 79 (482)
Q Consensus 1 ~n~~~g~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l~ 79 (482)
+|++.+..|.+|.++++|++|++++|.++++.|.+|+++++|++|++++|.+++..|+. ..+++|++|++++|.++.++
T Consensus 41 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 120 (606)
T 3vq2_A 41 FNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSS
T ss_pred CCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccc
Confidence 47788888888999999999999999998877888999999999999999998887766 88999999999998887553
Q ss_pred cCCCCcccccCCCCCcCCccccEEEccCCCCC--CCCC-CCCCCCCCEEEcccCcccccCChhhhhcCCCCcc----EEe
Q 035547 80 LLSNNQFENQFPEISNMSSSFSKLRLASSKPW--VIPI-LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLY----FLN 152 (482)
Q Consensus 80 ~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~--~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~----~L~ 152 (482)
+..+..+++|+.|++++|.+. .+|. ++++++|++|++++|++++..+..+..+.. |+ +|+
T Consensus 121 -----------~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~~l~~L~ 187 (606)
T 3vq2_A 121 -----------SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE--NPQVNLSLD 187 (606)
T ss_dssp -----------SSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHH--CTTCCCEEE
T ss_pred -----------ccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhc--cccccceee
Confidence 233444488889999988887 4677 888889999999998888777777766654 33 566
Q ss_pred CCCCcccCCCCCCCCCCCccEEEccCCccc--------------------------------------------------
Q 035547 153 LSQNLLVSLQEPYHISGRTYSFSTINKSLI-------------------------------------------------- 182 (482)
Q Consensus 153 L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~-------------------------------------------------- 182 (482)
+++|.++.+++..+...+++.|++++|.+.
T Consensus 188 l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 267 (606)
T 3vq2_A 188 MSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267 (606)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEE
T ss_pred ccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhee
Confidence 666666655544443224444444444321
Q ss_pred ----------------------------------------------------ccCh--------------------hhhh
Q 035547 183 ----------------------------------------------------GFIP--------------------EYIC 190 (482)
Q Consensus 183 ----------------------------------------------------~~~~--------------------~~~~ 190 (482)
+.+| ..+.
T Consensus 268 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~ 347 (606)
T 3vq2_A 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKV 347 (606)
T ss_dssp ECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCC
T ss_pred ccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhc
Confidence 1111 1223
Q ss_pred cCCCCCEEeCCCCccccc--CChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcC-hhhhcCCC
Q 035547 191 KATYFQVLDLSNNNLSGS--IPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFP-CWLRNAFS 267 (482)
Q Consensus 191 ~l~~L~~L~l~~n~l~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~ 267 (482)
.+++|+.|++++|.+.+. .|..+.... +|++|++++|.+..+|..+..+++|++|++++|.+.+..+ ..+..+++
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTN--SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCS--CCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCC--cccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 455666677777766643 256665555 8888888888888888888888999999999999988766 67888999
Q ss_pred CcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCccc-CCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhh
Q 035547 268 LQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGR-LSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMG 346 (482)
Q Consensus 268 L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 346 (482)
|++|++++|.+.+.. +..+..+++|++|++++|.+++. +|..+ ..+++|++|++++|.+++..|..++
T Consensus 426 L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---------~~l~~L~~L~Ls~n~l~~~~~~~~~ 494 (606)
T 3vq2_A 426 LLYLDISYTNTKIDF--DGIFLGLTSLNTLKMAGNSFKDNTLSNVF---------ANTTNLTFLDLSKCQLEQISWGVFD 494 (606)
T ss_dssp CCEEECTTSCCEECC--TTTTTTCTTCCEEECTTCEEGGGEECSCC---------TTCTTCCEEECTTSCCCEECTTTTT
T ss_pred CCEEECcCCCCCccc--hhhhcCCCCCCEEECCCCcCCCcchHHhh---------ccCCCCCEEECCCCcCCccChhhhc
Confidence 999999999998866 56788999999999999998873 45333 6789999999999999999999999
Q ss_pred cCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCccccCCCC-cccC-cCCCCcccCCCCCCCCC
Q 035547 347 RFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPTS-TQLQ-SFLPTSYEGNKGLYIPP 413 (482)
Q Consensus 347 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~-~~~~~~~~~n~~~~~~~ 413 (482)
.+++|++|+|++|++++..|..|..+++|++|++++|+++. +|.. ..+. .+..+++.+||+.|.++
T Consensus 495 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99999999999999998889999999999999999999984 4443 3343 47788899999998665
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.3e-44 Score=375.75 Aligned_cols=381 Identities=19% Similarity=0.229 Sum_probs=308.3
Q ss_pred CCcceecCCcCCCCCCCCCEEeCCCCcC----------------------------------------------------
Q 035547 1 NTSFLGTLPDSIGTLENLTRVDLRSYNF---------------------------------------------------- 28 (482)
Q Consensus 1 ~n~~~g~~p~~~~~l~~L~~L~L~~n~l---------------------------------------------------- 28 (482)
+|++.|.+|++|+.+++|++|+|++|.+
T Consensus 90 ~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~ 169 (636)
T 4eco_A 90 GFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSD 169 (636)
T ss_dssp TSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHC
T ss_pred CcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcC
Confidence 4789999999999999999999998843
Q ss_pred --------------------------CCCCchhccCCCCCCEEeCCCCcccC------------------CCCCCC--CC
Q 035547 29 --------------------------TRPIPTSMANLAQLFHMDFSSNHFSG------------------PIPSLH--KS 62 (482)
Q Consensus 29 --------------------------~~~~~~~~~~l~~L~~L~L~~n~l~~------------------~~~~~~--~l 62 (482)
++ +|..|+++++|++|+|++|.+++ +++..+ .+
T Consensus 170 l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l 248 (636)
T 4eco_A 170 PQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL 248 (636)
T ss_dssp TTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC
T ss_pred ccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhccc
Confidence 34 68889999999999999999998 555557 89
Q ss_pred CCCCEEECcCCCCcccccCCCCcccccCCCCCcCCccccEEEccCCC-CC--CCCC-CCCC------CCCCEEEcccCcc
Q 035547 63 RNLNYLDLSSNNLNEIHLLSNNQFENQFPEISNMSSSFSKLRLASSK-PW--VIPI-LKNQ------SQLSFFYISNNQI 132 (482)
Q Consensus 63 ~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~-l~--~l~~-~~~l------~~L~~L~Ls~n~l 132 (482)
++|++|+|++|++. +.+|+.+..+++|+.|++++|. ++ .+|. ++.+ ++|++|++++|++
T Consensus 249 ~~L~~L~L~~n~l~-----------~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 249 KDLTDVEVYNCPNL-----------TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTCCEEEEECCTTC-----------SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred CCCCEEEecCCcCC-----------ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 99999999998654 3456666555899999999998 77 4777 6665 8999999999999
Q ss_pred cccCCh--hhhhcCCCCccEEeCCCCccc-CCCCCCCCCCCccEEEccCCcccccChhhhhcCCC-CCEEeCCCCccccc
Q 035547 133 SGEIPN--WIWEVGGVNLYFLNLSQNLLV-SLQEPYHISGRTYSFSTINKSLIGFIPEYICKATY-FQVLDLSNNNLSGS 208 (482)
Q Consensus 133 ~~~~~~--~~~~l~~~~L~~L~L~~n~i~-~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~ 208 (482)
+ .+|. .+..++. |++|++++|+++ .++ .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .
T Consensus 318 ~-~ip~~~~l~~l~~--L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~ 391 (636)
T 4eco_A 318 K-TFPVETSLQKMKK--LGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-Y 391 (636)
T ss_dssp S-SCCCHHHHTTCTT--CCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-S
T ss_pred C-ccCchhhhccCCC--CCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-c
Confidence 8 8888 8888887 999999999998 676 4447889999999999988 67777888888 999999999988 7
Q ss_pred CChhhhhcCcCccceEEccCCCCCc-hhhhcc-------cCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCcccc
Q 035547 209 IPACLITKSSTTLGVLNLRRNNLGV-VLKSLA-------NCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSE 280 (482)
Q Consensus 209 ~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~-------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 280 (482)
+|..+.....++|++|++++|.++. +|..+. .+++|++|++++|.+++..+..+..+++|++|++++|.++.
T Consensus 392 lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~ 471 (636)
T 4eco_A 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471 (636)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB
T ss_pred cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC
Confidence 8877766555579999999998854 455666 67789999999999987666667778999999999999984
Q ss_pred ccCCCCCCCCC-------CCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCe
Q 035547 281 RISCPRNNVSW-------PLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYA 353 (482)
Q Consensus 281 ~~~~~~~~~~l-------~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 353 (482)
.. ...+... ++|++|+|++|.++ .+|..++ ...+++|++|+|++|++++ +|..+..+++|+.
T Consensus 472 i~--~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-------~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~ 540 (636)
T 4eco_A 472 IP--KNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFR-------ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKG 540 (636)
T ss_dssp CC--SSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGS-------TTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCE
T ss_pred cC--HHHhccccccccccCCccEEECcCCcCC-ccChhhh-------hccCCCcCEEECCCCCCCC-cChhhhcCCCCCE
Confidence 43 3333333 38999999999998 5554331 0267899999999999997 7888889999999
Q ss_pred eec------cCCcCcccccccccCCCCCCEEeCCCCCccccCCCCcccCcCCCCcccCCCCCCCC
Q 035547 354 PNM------SHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQSFLPTSYEGNKGLYIP 412 (482)
Q Consensus 354 L~L------s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~~~~ 412 (482)
|+| ++|++.+.+|..+..+++|+.|++++|++ +.+|.... ..+..+++.+|+..|..
T Consensus 541 L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNISID 603 (636)
T ss_dssp EECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCEEE
T ss_pred EECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCcccc
Confidence 999 45777788899999999999999999999 57776533 67788888888887643
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5e-43 Score=366.25 Aligned_cols=376 Identities=18% Similarity=0.155 Sum_probs=269.2
Q ss_pred CcceecCCcCCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCC-CCCCCCCCCCEEECcCCCCcccc-
Q 035547 2 TSFLGTLPDSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPI-PSLHKSRNLNYLDLSSNNLNEIH- 79 (482)
Q Consensus 2 n~~~g~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~Ls~N~i~~l~- 79 (482)
|++.+..|.+|+++++|++|++++|.+++..+..|+++++|++|++++|.+.+.. +....+++|++|++++|.++.+.
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence 4444445555555555555555555555544445555555566666666555533 33344667777777776665221
Q ss_pred --------------cCCCCcccccCCCCC---------------------------------------------------
Q 035547 80 --------------LLSNNQFENQFPEIS--------------------------------------------------- 94 (482)
Q Consensus 80 --------------~l~~n~l~~~~p~~~--------------------------------------------------- 94 (482)
++++|.+.+..|..+
T Consensus 171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~ 250 (606)
T 3t6q_A 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250 (606)
T ss_dssp HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhch
Confidence 345565555444332
Q ss_pred ------------------------cCCccccEEEccCCCCCCCCC-CCCCCCCCEEEcccCcccccCChhhhhcCCCCcc
Q 035547 95 ------------------------NMSSSFSKLRLASSKPWVIPI-LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLY 149 (482)
Q Consensus 95 ------------------------~~~~~L~~L~l~~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~ 149 (482)
...++|++|++++|.++.+|. +.++++|++|++++|++++..|..+..++. |+
T Consensus 251 l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--L~ 328 (606)
T 3t6q_A 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS--LT 328 (606)
T ss_dssp GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT--CS
T ss_pred hhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCc--CC
Confidence 222455566666666655555 556666666666666665555555555555 66
Q ss_pred EEeCCCCccc-CCCCCCC-CCCCccEEEccCCcccccC--hhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEE
Q 035547 150 FLNLSQNLLV-SLQEPYH-ISGRTYSFSTINKSLIGFI--PEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLN 225 (482)
Q Consensus 150 ~L~L~~n~i~-~~~~~~~-~~~~l~~L~l~~n~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ 225 (482)
+|++++|.+. .++...+ .+++|+.|++++|.+.+.. +..+..+++|++|++++|++.+..|..+.... +|++|+
T Consensus 329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~ 406 (606)
T 3t6q_A 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP--QLELLD 406 (606)
T ss_dssp EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCT--TCSEEE
T ss_pred EEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCc--cCCeEE
Confidence 6666666555 3333333 6677788888887777654 66777888888888888888767777776666 888888
Q ss_pred ccCCCCCchh--hhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccc-cCCCCCCCCCCCCCEEecCCC
Q 035547 226 LRRNNLGVVL--KSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSER-ISCPRNNVSWPLLKIVDLASN 302 (482)
Q Consensus 226 l~~n~l~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~~~l~~L~~L~Ls~n 302 (482)
+++|.+.... ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+. .+....+..+++|++|++++|
T Consensus 407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp CTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred CCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 8888885542 3478889999999999999988888899999999999999999863 223467889999999999999
Q ss_pred CCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCC
Q 035547 303 KFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLM 382 (482)
Q Consensus 303 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 382 (482)
.+++..|..+ ..+++|++|++++|++++..|..+..+++| .|++++|++++..|..+..+++|+.+++++
T Consensus 487 ~l~~~~~~~~---------~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 556 (606)
T 3t6q_A 487 DLSSIDQHAF---------TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQ 556 (606)
T ss_dssp CCCEECTTTT---------TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTT
T ss_pred ccCccChhhh---------ccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCC
Confidence 9998877544 678999999999999999999999999999 999999999988888899999999999999
Q ss_pred CCccccCCC
Q 035547 383 NNLMGKIPT 391 (482)
Q Consensus 383 N~l~~~~p~ 391 (482)
|++.+.++.
T Consensus 557 N~~~c~c~~ 565 (606)
T 3t6q_A 557 NPLDCTCSN 565 (606)
T ss_dssp CCEECSGGG
T ss_pred CCccccCCc
Confidence 999976654
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9e-43 Score=361.70 Aligned_cols=388 Identities=16% Similarity=0.129 Sum_probs=283.1
Q ss_pred CCcceecCCcCCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCcccc
Q 035547 1 NTSFLGTLPDSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLNEIH 79 (482)
Q Consensus 1 ~n~~~g~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l~ 79 (482)
+|++.+..|.+|.++++|++|++++|.++++.+..|+++++|++|++++|.+++.++.. ..+++|++|++++|+++.++
T Consensus 37 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 116 (570)
T 2z63_A 37 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116 (570)
T ss_dssp SCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCST
T ss_pred CCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCC
Confidence 36667766777888888888888888877766777788888888888888877776655 77888888888888777553
Q ss_pred cCCCCcccccCCCCCcCCccccEEEccCCCCCC--CCC-CCCCCCCCEEEcccCcccccCChhhhhcCCCCc----cEEe
Q 035547 80 LLSNNQFENQFPEISNMSSSFSKLRLASSKPWV--IPI-LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNL----YFLN 152 (482)
Q Consensus 80 ~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~--l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L----~~L~ 152 (482)
+..+..+++|++|++++|.+.. +|. ++++++|++|++++|++++..+..+..+.. | +.|+
T Consensus 117 -----------~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~~~~~L~ 183 (570)
T 2z63_A 117 -----------NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ--MPLLNLSLD 183 (570)
T ss_dssp -----------TCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHT--CTTCCCEEE
T ss_pred -----------CccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhc--cchhhhhcc
Confidence 2123333889999999998885 577 888999999999999998777777887777 7 7888
Q ss_pred CCCCcccCCCCCCCCCCCccEEEccCC-----------------------------------------------------
Q 035547 153 LSQNLLVSLQEPYHISGRTYSFSTINK----------------------------------------------------- 179 (482)
Q Consensus 153 L~~n~i~~~~~~~~~~~~l~~L~l~~n----------------------------------------------------- 179 (482)
+++|.++.+++..+...+++.+++++|
T Consensus 184 l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 263 (570)
T 2z63_A 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263 (570)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred cCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence 888888877665553335556555554
Q ss_pred -----cccccChhhhhcCCCCCEEeCCCCcccccCChhhhh---------------------------------------
Q 035547 180 -----SLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLIT--------------------------------------- 215 (482)
Q Consensus 180 -----~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------------------------- 215 (482)
.+.+..++.+..+++|+.|++++|.+. .+|..+..
T Consensus 264 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~ 342 (570)
T 2z63_A 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342 (570)
T ss_dssp EEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCC
T ss_pred hhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccc
Confidence 222334444555556666666555554 33322211
Q ss_pred -cCcCccceEEccCCCCCch---hhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCC
Q 035547 216 -KSSTTLGVLNLRRNNLGVV---LKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSW 291 (482)
Q Consensus 216 -~~~~~L~~L~l~~n~l~~~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l 291 (482)
...++|++|++++|.++.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ...+..+
T Consensus 343 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l 420 (570)
T 2z63_A 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSE-FSVFLSL 420 (570)
T ss_dssp CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTT-SCTTTTC
T ss_pred cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccc-hhhhhcC
Confidence 1223677777777777554 45677777888888888877764444 7778888888888888876543 3567888
Q ss_pred CCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCccc-ccChHhhhcCCCCCeeeccCCcCccccccccc
Q 035547 292 PLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFE-GPMPEEMGRFKSLYAPNMSHNALKGSIPSSFG 370 (482)
Q Consensus 292 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 370 (482)
++|++|++++|.+.+..+..+ ..+++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..|.
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~---------~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 491 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIF---------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTT---------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred CCCCEEeCcCCcccccchhhh---------hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhh
Confidence 889999999988887776443 57888999999999887 56788888889999999999999877788888
Q ss_pred CCCCCCEEeCCCCCccccCCCC-cccCcCCCCcccCCCCCCCCC
Q 035547 371 NLKQIESLDLLMNNLMGKIPTS-TQLQSFLPTSYEGNKGLYIPP 413 (482)
Q Consensus 371 ~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~~~~~~ 413 (482)
.+++|++|++++|++++..|.. ..+..+..+++.+|++.|.++
T Consensus 492 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 8999999999999988776653 456677788888888887554
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.7e-42 Score=363.06 Aligned_cols=407 Identities=19% Similarity=0.132 Sum_probs=247.4
Q ss_pred CcceecCCcCCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCcccc-
Q 035547 2 TSFLGTLPDSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLNEIH- 79 (482)
Q Consensus 2 n~~~g~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l~- 79 (482)
|++.+..+.+|+.+++|++|++++|.++++.|.+|+++++|++|++++|.+++..+.. ..+++|++|++++|.++.+.
T Consensus 83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred CccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH
Confidence 4455433345777777777777777777655666777777777777777776665555 66777777777777654221
Q ss_pred --------------cCCCCcccccCCCC---------------------------------------------------C
Q 035547 80 --------------LLSNNQFENQFPEI---------------------------------------------------S 94 (482)
Q Consensus 80 --------------~l~~n~l~~~~p~~---------------------------------------------------~ 94 (482)
+++.|.+.+..|.. +
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~ 242 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred HHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHh
Confidence 44555554443321 1
Q ss_pred cCC--ccccEEEccCCCCCCCC-C-CCCCCCCCEEEcccCcccccCChhhhhcCC-------------------------
Q 035547 95 NMS--SSFSKLRLASSKPWVIP-I-LKNQSQLSFFYISNNQISGEIPNWIWEVGG------------------------- 145 (482)
Q Consensus 95 ~~~--~~L~~L~l~~n~l~~l~-~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~------------------------- 145 (482)
... ++|+.|++++|.+..++ . |..+++|++|++++|++++..|..+..+..
T Consensus 243 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~ 322 (680)
T 1ziw_A 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322 (680)
T ss_dssp GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECT
T ss_pred hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccCh
Confidence 111 23777777777777544 3 777777888888877777665555544333
Q ss_pred ------CCccEEeCCCCcccCCCCCCC-CCCCccEEEc----------------------------cCCcccccChhhhh
Q 035547 146 ------VNLYFLNLSQNLLVSLQEPYH-ISGRTYSFST----------------------------INKSLIGFIPEYIC 190 (482)
Q Consensus 146 ------~~L~~L~L~~n~i~~~~~~~~-~~~~l~~L~l----------------------------~~n~~~~~~~~~~~ 190 (482)
.+|++|++++|+++.+++..+ .+++|+.|++ ++|.+.+..|.++.
T Consensus 323 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~ 402 (680)
T 1ziw_A 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT
T ss_pred hhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhh
Confidence 114444444444444433222 3333333333 23333333344444
Q ss_pred cCCCCCEEeCCCCcccccCC-hhhhhcCcCccceEEccCCCCCchh-hhcccCCCCCEEeCCCcccC--CCcChhhhcCC
Q 035547 191 KATYFQVLDLSNNNLSGSIP-ACLITKSSTTLGVLNLRRNNLGVVL-KSLANCNMLQVLDLRNNHIS--DNFPCWLRNAF 266 (482)
Q Consensus 191 ~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~ 266 (482)
.+++|+.|++++|.+.+.+| ..+.... +|++|++++|.+..++ ..+..+++|+.|++++|.+. +..|..|..++
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLE--NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCT--TCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcc--cccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC
Confidence 44444444444444443333 2333332 4445555554443332 24444555555555555544 34566677777
Q ss_pred CCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhh
Q 035547 267 SLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMG 346 (482)
Q Consensus 267 ~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 346 (482)
+|++|++++|.+++.. +..+..+++|++|++++|.+++..+..+... ....+..+++|++|+|++|.++.+.+..|.
T Consensus 481 ~L~~L~Ls~N~l~~i~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~ 557 (680)
T 1ziw_A 481 NLTILDLSNNNIANIN--DDMLEGLEKLEILDLQHNNLARLWKHANPGG-PIYFLKGLSHLHILNLESNGFDEIPVEVFK 557 (680)
T ss_dssp TCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCGGGGSTTSTTS-CCCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCEEECCCCCCCcCC--hhhhccccccCEEeCCCCCccccchhhccCC-cchhhcCCCCCCEEECCCCCCCCCCHHHcc
Confidence 8888888888877655 5567788888888888888775422110000 000125678889999999999866666788
Q ss_pred cCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCccccCCCCc--ccCcCCCCcccCCCCCCCCC
Q 035547 347 RFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPTST--QLQSFLPTSYEGNKGLYIPP 413 (482)
Q Consensus 347 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~--~~~~~~~~~~~~n~~~~~~~ 413 (482)
++++|+.|+|++|++++..+..|..+++|+.|++++|++++..|... .+..+..+++.+||+.|.++
T Consensus 558 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred cccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 99999999999999986666677889999999999999987665432 45677888899999998655
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.8e-43 Score=368.76 Aligned_cols=355 Identities=16% Similarity=0.207 Sum_probs=307.6
Q ss_pred CCcceecCCcCCCCCCCCCEEeCCCCcCCCC-----------------Cchhcc--CCCCCCEEeCCCCcccCCCCCC-C
Q 035547 1 NTSFLGTLPDSIGTLENLTRVDLRSYNFTRP-----------------IPTSMA--NLAQLFHMDFSSNHFSGPIPSL-H 60 (482)
Q Consensus 1 ~n~~~g~~p~~~~~l~~L~~L~L~~n~l~~~-----------------~~~~~~--~l~~L~~L~L~~n~l~~~~~~~-~ 60 (482)
+|+++| +|++|+++++|++|+|++|.+++. +|..++ ++++|++|++++|.+.+..|.. .
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 368899 999999999999999999999996 899988 9999999999999998888876 8
Q ss_pred CCCCCCEEECcCCC-CcccccCCCCcccccCCCCCcC------CccccEEEccCCCCCCCCC---CCCCCCCCEEEcccC
Q 035547 61 KSRNLNYLDLSSNN-LNEIHLLSNNQFENQFPEISNM------SSSFSKLRLASSKPWVIPI---LKNQSQLSFFYISNN 130 (482)
Q Consensus 61 ~l~~L~~L~Ls~N~-i~~l~~l~~n~l~~~~p~~~~~------~~~L~~L~l~~n~l~~l~~---~~~l~~L~~L~Ls~n 130 (482)
.+++|++|++++|+ ++.- .+|..+.. .++|+.|++++|.++.+|. ++++++|++|++++|
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~----------~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGE----------QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp TCSSCCEEECTTCTTSCHH----------HHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC
T ss_pred cCCCCCEEECcCCCCCccc----------cchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCC
Confidence 99999999999997 6630 12322211 2789999999999999997 999999999999999
Q ss_pred cccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCC-ccEEEccCCcccccChhhhhcCC--CCCEEeCCCCcccc
Q 035547 131 QISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGR-TYSFSTINKSLIGFIPEYICKAT--YFQVLDLSNNNLSG 207 (482)
Q Consensus 131 ~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~-l~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~l~~ 207 (482)
++++.+| .+..++. |++|++++|+++.++..+..+++ |+.|++++|.+. .+|..+..+. +|+.|++++|.+.+
T Consensus 341 ~l~g~ip-~~~~l~~--L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 341 QLEGKLP-AFGSEIK--LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp CCEEECC-CCEEEEE--ESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred cCccchh-hhCCCCC--CCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCC
Confidence 9998999 8888888 99999999999998888778888 999999999998 6777776654 89999999999998
Q ss_pred cCChhhh-------hcCcCccceEEccCCCCCchhhhc-ccCCCCCEEeCCCcccCCCcChhhhcCC-------CCcEEE
Q 035547 208 SIPACLI-------TKSSTTLGVLNLRRNNLGVVLKSL-ANCNMLQVLDLRNNHISDNFPCWLRNAF-------SLQVLV 272 (482)
Q Consensus 208 ~~~~~~~-------~~~~~~L~~L~l~~n~l~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-------~L~~L~ 272 (482)
..|..+. ... +|++|++++|.++.+|..+ ..+++|++|++++|.++...+..+.... +|++|+
T Consensus 417 ~~p~~l~~~~~~~~~~~--~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~ 494 (636)
T 4eco_A 417 VDGKNFDPLDPTPFKGI--NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494 (636)
T ss_dssp TTTCSSCTTCSSCCCCC--CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEE
T ss_pred cchhhhcccccccccCC--CCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEE
Confidence 8887776 444 9999999999999998754 5689999999999999965555555443 999999
Q ss_pred cccCccccccCCCCCCC--CCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeC------CCCcccccChHh
Q 035547 273 FRSNNFSERISCPRNNV--SWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDC------SSNNFEGPMPEE 344 (482)
Q Consensus 273 L~~N~i~~~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L------s~n~l~~~~~~~ 344 (482)
+++|.++.. +..+. .+++|++|+|++|.+++ +|..+ ..+++|++|++ ++|++.+.+|..
T Consensus 495 Ls~N~l~~l---p~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~---------~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~ 561 (636)
T 4eco_A 495 LRFNKLTKL---SDDFRATTLPYLVGIDLSYNSFSK-FPTQP---------LNSSTLKGFGIRNQRDAQGNRTLREWPEG 561 (636)
T ss_dssp CCSSCCCBC---CGGGSTTTCTTCCEEECCSSCCSS-CCCGG---------GGCSSCCEEECCSCBCTTCCBCCCCCCTT
T ss_pred CcCCcCCcc---ChhhhhccCCCcCEEECCCCCCCC-cChhh---------hcCCCCCEEECCCCcccccCcccccChHH
Confidence 999999954 44555 99999999999999998 66544 57899999999 568888899999
Q ss_pred hhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCcccc
Q 035547 345 MGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGK 388 (482)
Q Consensus 345 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 388 (482)
++.+++|++|+|++|++. .+|..+. ++|+.|++++|++...
T Consensus 562 l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 562 ITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp GGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEE
T ss_pred HhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccc
Confidence 999999999999999995 8888766 7999999999988753
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.8e-43 Score=371.46 Aligned_cols=380 Identities=18% Similarity=0.251 Sum_probs=294.0
Q ss_pred CCcceecCCcCCCCCCCCCEEeC-CCCcCCCC------------------------------------------------
Q 035547 1 NTSFLGTLPDSIGTLENLTRVDL-RSYNFTRP------------------------------------------------ 31 (482)
Q Consensus 1 ~n~~~g~~p~~~~~l~~L~~L~L-~~n~l~~~------------------------------------------------ 31 (482)
+|++.|.+|++|+.+++|++|+| ++|.+++.
T Consensus 332 ~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~ 411 (876)
T 4ecn_A 332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN 411 (876)
T ss_dssp TTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTC
T ss_pred cCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhC
Confidence 57899999999999999999999 66644332
Q ss_pred ----------------------------CchhccCCCCCCEEeCCCCcccC------------------CCCCCC--CCC
Q 035547 32 ----------------------------IPTSMANLAQLFHMDFSSNHFSG------------------PIPSLH--KSR 63 (482)
Q Consensus 32 ----------------------------~~~~~~~l~~L~~L~L~~n~l~~------------------~~~~~~--~l~ 63 (482)
+|..|+++++|++|+|++|.+++ +++..+ .++
T Consensus 412 ~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~ 491 (876)
T 4ecn_A 412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK 491 (876)
T ss_dssp TTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred ccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC
Confidence 67889999999999999999998 555546 899
Q ss_pred CCCEEECcCCCCcccccCCCCcccccCCCCCcCCccccEEEccCCC-CCC--CCC-CC-------CCCCCCEEEcccCcc
Q 035547 64 NLNYLDLSSNNLNEIHLLSNNQFENQFPEISNMSSSFSKLRLASSK-PWV--IPI-LK-------NQSQLSFFYISNNQI 132 (482)
Q Consensus 64 ~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~-l~~--l~~-~~-------~l~~L~~L~Ls~n~l 132 (482)
+|++|+|++|++. +.+|..+..+++|+.|++++|+ +.. +|. ++ .+++|++|++++|++
T Consensus 492 ~L~~L~Ls~N~l~-----------~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 492 DLTDVELYNCPNM-----------TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TCCEEEEESCTTC-----------CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CCCEEECcCCCCC-----------ccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 9999999998654 3346555555888999999887 763 665 44 445899999999998
Q ss_pred cccCCh--hhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCC-CCEEeCCCCcccccC
Q 035547 133 SGEIPN--WIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATY-FQVLDLSNNNLSGSI 209 (482)
Q Consensus 133 ~~~~~~--~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~ 209 (482)
+ .+|. .+..++. |+.|++++|+++.++ .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+
T Consensus 561 ~-~ip~~~~l~~L~~--L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l 634 (876)
T 4ecn_A 561 E-EFPASASLQKMVK--LGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI 634 (876)
T ss_dssp C-BCCCHHHHTTCTT--CCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred C-ccCChhhhhcCCC--CCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence 8 7887 8888887 999999999888777 4557888999999999888 67777888888 999999999888 78
Q ss_pred ChhhhhcCcCccceEEccCCCCCchhhhc----c--cCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccC
Q 035547 210 PACLITKSSTTLGVLNLRRNNLGVVLKSL----A--NCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERIS 283 (482)
Q Consensus 210 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 283 (482)
|..+.....++|+.|++++|.+...++.+ . .+++|+.|++++|.+++..+..+..+++|+.|+|++|.++...
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip- 713 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIP- 713 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCC-
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccC-
Confidence 87766655445889999998885443222 2 3458889999999988654445567889999999999888443
Q ss_pred CCCCCC-------CCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeec
Q 035547 284 CPRNNV-------SWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNM 356 (482)
Q Consensus 284 ~~~~~~-------~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 356 (482)
...+. ++++|+.|+|++|.++ .+|..+. ...+++|+.|+|++|.+++ +|..+..+++|+.|+|
T Consensus 714 -~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~-------~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~L 783 (876)
T 4ecn_A 714 -ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFR-------ATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGI 783 (876)
T ss_dssp -TTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGS-------TTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEEC
T ss_pred -hHHhccccccccccCCccEEECCCCCCc-cchHHhh-------hccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEEC
Confidence 23333 2338999999999888 4554331 0267889999999999986 6778888999999988
Q ss_pred cC------CcCcccccccccCCCCCCEEeCCCCCccccCCCCcccCcCCCCcccCCCCCC
Q 035547 357 SH------NALKGSIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQSFLPTSYEGNKGLY 410 (482)
Q Consensus 357 s~------N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~~ 410 (482)
++ |++.+.+|..+..+++|+.|++++|++ +.+|... ...+..+++.+|+...
T Consensus 784 s~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l-~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 784 RHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL-TPQLYILDIADNPNIS 841 (876)
T ss_dssp CCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CSSSCEEECCSCTTCE
T ss_pred CCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh-cCCCCEEECCCCCCCc
Confidence 76 777778888888899999999999998 6777752 3567777888887654
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.8e-41 Score=354.53 Aligned_cols=274 Identities=15% Similarity=0.087 Sum_probs=224.6
Q ss_pred cccEEEccCCCCCCCCCCCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccC
Q 035547 99 SFSKLRLASSKPWVIPILKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTIN 178 (482)
Q Consensus 99 ~L~~L~l~~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~ 178 (482)
+|+.|++++|.+..+|.+..+++|++|++++|.+ +.+| .+ .++. |++|++++|+..... .+..+++|+.|++++
T Consensus 286 ~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~--L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~ 359 (606)
T 3vq2_A 286 NVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFP-TL-DLPF--LKSLTLTMNKGSISF-KKVALPSLSYLDLSR 359 (606)
T ss_dssp TCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCC-CC-CCSS--CCEEEEESCSSCEEC-CCCCCTTCCEEECCS
T ss_pred CCCEEEecCccchhhhhccccccCCEEEcccccC-cccc-cC-CCCc--cceeeccCCcCccch-hhccCCCCCEEECcC
Confidence 3444444444444555555666777777777777 3666 33 5555 777777777433321 333788999999999
Q ss_pred Cccccc--ChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhh--hcccCCCCCEEeCCCccc
Q 035547 179 KSLIGF--IPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLK--SLANCNMLQVLDLRNNHI 254 (482)
Q Consensus 179 n~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~l~~L~~L~Ls~N~l 254 (482)
|.+.+. .+..+..+++|+.|++++|.+. .+|..+.... +|++|++++|.+...+. .+..+++|++|++++|.+
T Consensus 360 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 436 (606)
T 3vq2_A 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLE--ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436 (606)
T ss_dssp SCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCT--TCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred CccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCC--CCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence 999876 4888999999999999999998 5777777666 99999999999977654 788999999999999999
Q ss_pred CCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCC
Q 035547 255 SDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSS 334 (482)
Q Consensus 255 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 334 (482)
.+..|..+..+++|++|++++|.+.+... +..+..+++|++|++++|.+++..|..+ ..+++|++|++++
T Consensus 437 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---------~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTL-SNVFANTTNLTFLDLSKCQLEQISWGVF---------DTLHRLQLLNMSH 506 (606)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEGGGEE-CSCCTTCTTCCEEECTTSCCCEECTTTT---------TTCTTCCEEECCS
T ss_pred CccchhhhcCCCCCCEEECCCCcCCCcch-HHhhccCCCCCEEECCCCcCCccChhhh---------cccccCCEEECCC
Confidence 99899999999999999999999997321 6788999999999999999998887544 6789999999999
Q ss_pred CcccccChHhhhcCCCCCeeeccCCcCcccccccccCCC-CCCEEeCCCCCccccCCCC
Q 035547 335 NNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLK-QIESLDLLMNNLMGKIPTS 392 (482)
Q Consensus 335 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~p~~ 392 (482)
|++++..|..++.+++|+.|+|++|+++ .+|..+..++ +|+.|++++|++.+.++..
T Consensus 507 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp SCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 9999999999999999999999999999 7777899997 5999999999999776654
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1e-41 Score=352.16 Aligned_cols=379 Identities=18% Similarity=0.156 Sum_probs=244.9
Q ss_pred CCcceecCCcCCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCcccc
Q 035547 1 NTSFLGTLPDSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLNEIH 79 (482)
Q Consensus 1 ~n~~~g~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l~ 79 (482)
+|++.+..|.+|.++++|++|++++|.+++..|.+|+++++|++|++++|.+++.++.. ..+++|++|++++|+++.++
T Consensus 35 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 114 (549)
T 2z81_A 35 FNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG 114 (549)
T ss_dssp SSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSC
T ss_pred CCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccc
Confidence 35666666777777777777777777777766667777777777777777777666664 67777777777777666431
Q ss_pred cCCCCcccccCCCCCcCCccccEEEccCCC-CCCCCC--CCCCCCCCEEEcccCcccccCChhhhhcCC-----------
Q 035547 80 LLSNNQFENQFPEISNMSSSFSKLRLASSK-PWVIPI--LKNQSQLSFFYISNNQISGEIPNWIWEVGG----------- 145 (482)
Q Consensus 80 ~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~-l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~----------- 145 (482)
.|..+...++|+.|++++|. +..+|. +.++++|++|++++|++++..|..+..++.
T Consensus 115 ----------~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 115 ----------VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp ----------SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred ----------hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 22333333666666666665 444542 666666666666666666555555544332
Q ss_pred -----------CCccEEeCCCCcccCCC---CCCC-CCCCccEEEccCCcccccChhh----------------------
Q 035547 146 -----------VNLYFLNLSQNLLVSLQ---EPYH-ISGRTYSFSTINKSLIGFIPEY---------------------- 188 (482)
Q Consensus 146 -----------~~L~~L~L~~n~i~~~~---~~~~-~~~~l~~L~l~~n~~~~~~~~~---------------------- 188 (482)
.+|++|++++|++++.+ ..+. ..++++.|++++|.+.+..+..
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 12666666666666542 1111 3344444444444433221111
Q ss_pred -----------------------------------------hhcCCCCCEEeCCCCcccccCChhhh-hcCcCccceEEc
Q 035547 189 -----------------------------------------ICKATYFQVLDLSNNNLSGSIPACLI-TKSSTTLGVLNL 226 (482)
Q Consensus 189 -----------------------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~~~L~~L~l 226 (482)
+...++|+.|++++|.+. .+|..+. ... +|++|++
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~--~L~~L~L 341 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLK--SLEFLDL 341 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCT--TCCEEEC
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCc--cccEEEc
Confidence 122345556666666654 5565553 344 7888888
Q ss_pred cCCCCCch-h---hhcccCCCCCEEeCCCcccCCCcC--hhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecC
Q 035547 227 RRNNLGVV-L---KSLANCNMLQVLDLRNNHISDNFP--CWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLA 300 (482)
Q Consensus 227 ~~n~l~~~-~---~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls 300 (482)
++|.+... | ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|++++. +..+..+++|++|+++
T Consensus 342 s~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l---p~~~~~~~~L~~L~Ls 418 (549)
T 2z81_A 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM---PDSCQWPEKMRFLNLS 418 (549)
T ss_dssp CSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC---CSCCCCCTTCCEEECT
T ss_pred cCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC---ChhhcccccccEEECC
Confidence 88887553 2 235677888888888888876432 4577788888888888888743 4566777888888888
Q ss_pred CCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeC
Q 035547 301 SNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDL 380 (482)
Q Consensus 301 ~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 380 (482)
+|.+++... ..+++|++|++++|++++.. ..+++|++|+|++|+++ .+|. ...+++|++|++
T Consensus 419 ~N~l~~l~~------------~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~L 480 (549)
T 2z81_A 419 STGIRVVKT------------CIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKI 480 (549)
T ss_dssp TSCCSCCCT------------TSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEEC
T ss_pred CCCcccccc------------hhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEec
Confidence 888774332 23467888888888887643 46788888888888887 6665 456788888888
Q ss_pred CCCCccccCCCC-cccCcCCCCcccCCCCCCCCC
Q 035547 381 LMNNLMGKIPTS-TQLQSFLPTSYEGNKGLYIPP 413 (482)
Q Consensus 381 ~~N~l~~~~p~~-~~~~~~~~~~~~~n~~~~~~~ 413 (482)
++|++++.+|.. ..+..+..+++.+|++.|.++
T Consensus 481 s~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 481 SRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 888888766653 456677778888888877543
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.6e-41 Score=354.00 Aligned_cols=375 Identities=19% Similarity=0.169 Sum_probs=216.9
Q ss_pred CCcceecCCcCCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCcccc
Q 035547 1 NTSFLGTLPDSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLNEIH 79 (482)
Q Consensus 1 ~n~~~g~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l~ 79 (482)
+|++.+..|.+|+++++|++|++++|.+++..|.+|+++++|++|++++|.++++++.. ..+++|++|++++|+++.++
T Consensus 34 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 113 (680)
T 1ziw_A 34 HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113 (680)
T ss_dssp SSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccC
Confidence 35666666666777888888888888887777777778888888888888877766654 77788888888877766442
Q ss_pred -------------cCCCCcccccCCCCCcCCccccEEEccCCCCCCCCC--C--CCCCCCCEEEcccCcccccCChhhhh
Q 035547 80 -------------LLSNNQFENQFPEISNMSSSFSKLRLASSKPWVIPI--L--KNQSQLSFFYISNNQISGEIPNWIWE 142 (482)
Q Consensus 80 -------------~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~l~~--~--~~l~~L~~L~Ls~n~l~~~~~~~~~~ 142 (482)
++++|.+.+..|..+..+++|++|++++|.++.++. + ..+++|++|++++|.+++..|..+..
T Consensus 114 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 193 (680)
T 1ziw_A 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGG
T ss_pred hhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhh
Confidence 334444444444433333455555555555444332 2 23344555555555544444433332
Q ss_pred cCC-------------------------CCccEEeCCCCcccCCCCCCC-CC--CCccEEEccCCcccccChhhhhcCCC
Q 035547 143 VGG-------------------------VNLYFLNLSQNLLVSLQEPYH-IS--GRTYSFSTINKSLIGFIPEYICKATY 194 (482)
Q Consensus 143 l~~-------------------------~~L~~L~L~~n~i~~~~~~~~-~~--~~l~~L~l~~n~~~~~~~~~~~~l~~ 194 (482)
+.. .+|+.|++++|.++...+..+ .+ ++|+.|++++|.+.+..+..+..+++
T Consensus 194 l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (680)
T 1ziw_A 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ 273 (680)
T ss_dssp SSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCccc
Confidence 211 124444444444444333333 22 23777777777777666666777777
Q ss_pred CCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCC------chhh----hcccCCCCCEEeCCCcccCCCcChhhhc
Q 035547 195 FQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLG------VVLK----SLANCNMLQVLDLRNNHISDNFPCWLRN 264 (482)
Q Consensus 195 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~------~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 264 (482)
|++|++++|++.+..|..+.... +|++|++++|... .+|. .+..+++|++|++++|.+++..+..|.+
T Consensus 274 L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 351 (680)
T 1ziw_A 274 LEYFFLEYNNIQHLFSHSLHGLF--NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351 (680)
T ss_dssp CCEEECCSCCBSEECTTTTTTCT--TCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTT
T ss_pred ccEeeCCCCccCccChhhhcCCC--CccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhcc
Confidence 77777777777665555555444 5555555544321 2222 4555666666666666666655555555
Q ss_pred CCCCcEEEcccC----------------------------ccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHH
Q 035547 265 AFSLQVLVFRSN----------------------------NFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTM 316 (482)
Q Consensus 265 l~~L~~L~L~~N----------------------------~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 316 (482)
+++|++|++++| .+++.. +..+..+++|++|++++|.+++.++...
T Consensus 352 l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~---- 425 (680)
T 1ziw_A 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE--SDAFSWLGHLEVLDLGLNEIGQELTGQE---- 425 (680)
T ss_dssp CTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCEEECCSGG----
T ss_pred ccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEC--hhhhhCCCCCCEEeCCCCcCccccCccc----
Confidence 555555555444 333333 3456667777777777777766554321
Q ss_pred HHHHhhcCCcceEEeCCCCcccccC--------------------------hHhhhcCCCCCeeeccCCcCccccccccc
Q 035547 317 MIIQLKIPNIFTSIDCSSNNFEGPM--------------------------PEEMGRFKSLYAPNMSHNALKGSIPSSFG 370 (482)
Q Consensus 317 ~~~~~~~~~~L~~L~Ls~n~l~~~~--------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 370 (482)
+..+++|++|++++|++.+.. |..+..+++|+.|++++|++++..+..|.
T Consensus 426 ----~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 501 (680)
T 1ziw_A 426 ----WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501 (680)
T ss_dssp ----GTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ----ccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc
Confidence 245666666666666665443 44455555566666666666544445555
Q ss_pred CCCCCCEEeCCCCCccc
Q 035547 371 NLKQIESLDLLMNNLMG 387 (482)
Q Consensus 371 ~l~~L~~L~l~~N~l~~ 387 (482)
++++|+.|++++|++++
T Consensus 502 ~l~~L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 502 GLEKLEILDLQHNNLAR 518 (680)
T ss_dssp TCTTCCEEECCSSCCGG
T ss_pred cccccCEEeCCCCCccc
Confidence 66666666666666554
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-40 Score=335.52 Aligned_cols=362 Identities=16% Similarity=0.122 Sum_probs=302.8
Q ss_pred ecCCcCCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccC-CCCCC-CCCCCCCEEECcCCCCcccccCCC
Q 035547 6 GTLPDSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSG-PIPSL-HKSRNLNYLDLSSNNLNEIHLLSN 83 (482)
Q Consensus 6 g~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~-~~l~~L~~L~Ls~N~i~~l~~l~~ 83 (482)
..+|+ + .++|++|+|++|.++++.|..|+++++|++|++++|.+.+ +.+.. ..+++|++|+|++|+++.+.
T Consensus 23 ~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~---- 95 (455)
T 3v47_A 23 HQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE---- 95 (455)
T ss_dssp SSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEEC----
T ss_pred ccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccC----
Confidence 34565 2 2789999999999999889999999999999999999874 44444 88999999999999887552
Q ss_pred CcccccCCCCCcCCccccEEEccCCCCCC--CCC--CCCCCCCCEEEcccCcccccCChh-hhhcCCCCccEEeCCCCcc
Q 035547 84 NQFENQFPEISNMSSSFSKLRLASSKPWV--IPI--LKNQSQLSFFYISNNQISGEIPNW-IWEVGGVNLYFLNLSQNLL 158 (482)
Q Consensus 84 n~l~~~~p~~~~~~~~L~~L~l~~n~l~~--l~~--~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~~~L~~L~L~~n~i 158 (482)
|..+...++|++|++++|.+.. ++. +.++++|++|++++|++++..|.. +..++. |++|++++|++
T Consensus 96 -------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~--L~~L~L~~n~l 166 (455)
T 3v47_A 96 -------TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR--FHVLDLTFNKV 166 (455)
T ss_dssp -------TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT--CCEEECTTCCB
T ss_pred -------hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc--ccEEeCCCCcc
Confidence 5555555999999999999985 333 889999999999999999777876 778888 99999999999
Q ss_pred cCCCCCCC-C--CCCccEEEccCCcccccChhh--------hhcCCCCCEEeCCCCcccccCChhhhhc-CcCccceEEc
Q 035547 159 VSLQEPYH-I--SGRTYSFSTINKSLIGFIPEY--------ICKATYFQVLDLSNNNLSGSIPACLITK-SSTTLGVLNL 226 (482)
Q Consensus 159 ~~~~~~~~-~--~~~l~~L~l~~n~~~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~~~L~~L~l 226 (482)
+...+..+ . ..+++.+++++|.+.+..+.. +..+++|+.|++++|++.+..|..+... ..++|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 98766554 3 379999999999998765433 2356789999999999998888776653 2238999999
Q ss_pred cCCCCCchh-----------hhcc--cCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCC
Q 035547 227 RRNNLGVVL-----------KSLA--NCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPL 293 (482)
Q Consensus 227 ~~n~l~~~~-----------~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~ 293 (482)
++|...... ..+. ..++|++|++++|.+++..|..+..+++|++|++++|.+.+.. +..+..+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~ 324 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID--DNAFWGLTH 324 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC--TTTTTTCTT
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC--hhHhcCccc
Confidence 988652211 1222 2368999999999999988999999999999999999999876 678899999
Q ss_pred CCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCC
Q 035547 294 LKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLK 373 (482)
Q Consensus 294 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 373 (482)
|++|+|++|.+++..+..+ ..+++|++|++++|.+++..|..+..+++|++|+|++|++++..+..+..++
T Consensus 325 L~~L~Ls~N~l~~~~~~~~---------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 395 (455)
T 3v47_A 325 LLKLNLSQNFLGSIDSRMF---------ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT 395 (455)
T ss_dssp CCEEECCSSCCCEECGGGG---------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred CCEEECCCCccCCcChhHh---------cCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCC
Confidence 9999999999988777544 6789999999999999999999999999999999999999976667789999
Q ss_pred CCCEEeCCCCCccccCCCCcc
Q 035547 374 QIESLDLLMNNLMGKIPTSTQ 394 (482)
Q Consensus 374 ~L~~L~l~~N~l~~~~p~~~~ 394 (482)
+|+.|++++|++++.+|....
T Consensus 396 ~L~~L~l~~N~l~~~~~~~~~ 416 (455)
T 3v47_A 396 SLQKIWLHTNPWDCSCPRIDY 416 (455)
T ss_dssp TCCEEECCSSCBCCCTTTTHH
T ss_pred cccEEEccCCCcccCCCcchH
Confidence 999999999999999886543
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-41 Score=361.31 Aligned_cols=362 Identities=14% Similarity=0.179 Sum_probs=303.1
Q ss_pred CCcceecCCcCCCCCCCCCEEeCCCCcCCCC-----------------Cchhcc--CCCCCCEEeCCCCcccCCCCCC-C
Q 035547 1 NTSFLGTLPDSIGTLENLTRVDLRSYNFTRP-----------------IPTSMA--NLAQLFHMDFSSNHFSGPIPSL-H 60 (482)
Q Consensus 1 ~n~~~g~~p~~~~~l~~L~~L~L~~n~l~~~-----------------~~~~~~--~l~~L~~L~L~~n~l~~~~~~~-~ 60 (482)
+|++.| +|++|+++++|++|+|++|.+++. +|..++ ++++|++|+|++|.+.+..|.. .
T Consensus 434 ~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 434 TNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred cCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 378888 999999999999999999999993 788877 9999999999999998888876 8
Q ss_pred CCCCCCEEECcCCC-Ccc--cccCCCCcccccCCCCCcCCccccEEEccCCCCCCCCC---CCCCCCCCEEEcccCcccc
Q 035547 61 KSRNLNYLDLSSNN-LNE--IHLLSNNQFENQFPEISNMSSSFSKLRLASSKPWVIPI---LKNQSQLSFFYISNNQISG 134 (482)
Q Consensus 61 ~l~~L~~L~Ls~N~-i~~--l~~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~l~~---~~~l~~L~~L~Ls~n~l~~ 134 (482)
.+++|++|+|++|+ ++. ++ ..+. ..+..+...++|+.|++++|.+..+|. ++++++|++|+|++|+++
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP----~~i~-~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~- 586 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLK----ADWT-RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR- 586 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHH----HHHH-HHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-
T ss_pred CCCCCCEEECcCCCCcccccch----HHHH-hhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-
Confidence 99999999999997 663 32 0000 001012222699999999999999987 999999999999999999
Q ss_pred cCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCC-ccEEEccCCcccccChhhhhcCC--CCCEEeCCCCcccccCCh
Q 035547 135 EIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGR-TYSFSTINKSLIGFIPEYICKAT--YFQVLDLSNNNLSGSIPA 211 (482)
Q Consensus 135 ~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~-l~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~ 211 (482)
.+| .+..++. |+.|++++|+++.++..+..+++ |+.|++++|.+. .+|..+..+. +|+.|++++|++.+.+|.
T Consensus 587 ~lp-~~~~L~~--L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 587 HLE-AFGTNVK--LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp BCC-CCCTTSE--ESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred cch-hhcCCCc--ceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcccc
Confidence 888 8888888 99999999999998888777888 999999999998 6777777665 499999999999876653
Q ss_pred ---hhhhcCcCccceEEccCCCCCchhhhcc-cCCCCCEEeCCCcccCCCcChhhhcC-------CCCcEEEcccCcccc
Q 035547 212 ---CLITKSSTTLGVLNLRRNNLGVVLKSLA-NCNMLQVLDLRNNHISDNFPCWLRNA-------FSLQVLVFRSNNFSE 280 (482)
Q Consensus 212 ---~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l-------~~L~~L~L~~N~i~~ 280 (482)
.+.....++|+.|++++|.++.+|..+. .+++|+.|++++|.++.+.+..+... ++|++|+|++|+++.
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~ 742 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC
T ss_pred chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc
Confidence 2333334489999999999999998654 78999999999999996444444332 389999999999994
Q ss_pred ccCCCCCCC--CCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCC------CcccccChHhhhcCCCCC
Q 035547 281 RISCPRNNV--SWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSS------NNFEGPMPEEMGRFKSLY 352 (482)
Q Consensus 281 ~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~ 352 (482)
. +..+. .+++|+.|+|++|.+++ +|..+ ..+++|+.|+|++ |.+.+.+|..+.++++|+
T Consensus 743 l---p~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l---------~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~ 809 (876)
T 4ecn_A 743 L---SDDFRATTLPYLSNMDVSYNCFSS-FPTQP---------LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809 (876)
T ss_dssp C---CGGGSTTTCTTCCEEECCSSCCSS-CCCGG---------GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred c---hHHhhhccCCCcCEEEeCCCCCCc-cchhh---------hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCC
Confidence 4 45555 89999999999999998 56444 5789999999976 888889999999999999
Q ss_pred eeeccCCcCcccccccccCCCCCCEEeCCCCCccccC
Q 035547 353 APNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKI 389 (482)
Q Consensus 353 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 389 (482)
.|+|++|++ +.+|..+. ++|+.||+++|++...-
T Consensus 810 ~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 810 QLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp EEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred EEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccC
Confidence 999999999 58888866 69999999999987543
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-41 Score=350.91 Aligned_cols=374 Identities=16% Similarity=0.139 Sum_probs=271.4
Q ss_pred CCcceecCCcCCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCccc-
Q 035547 1 NTSFLGTLPDSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLNEI- 78 (482)
Q Consensus 1 ~n~~~g~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l- 78 (482)
+|++.+..|++|+++++|++|++++|.+++..|.+|+++++|++|++++|.+++.++.. ..+++|++|++++|.++.+
T Consensus 61 ~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 140 (570)
T 2z63_A 61 RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140 (570)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCC
T ss_pred CCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceec
Confidence 36677776777888888888888888888766777888888888888888777666544 7777777777777766532
Q ss_pred -c------------cCCCCcccccCCCCCcCCccc----cEEEccCCCCCCCC---------------------------
Q 035547 79 -H------------LLSNNQFENQFPEISNMSSSF----SKLRLASSKPWVIP--------------------------- 114 (482)
Q Consensus 79 -~------------~l~~n~l~~~~p~~~~~~~~L----~~L~l~~n~l~~l~--------------------------- 114 (482)
+ ++++|.+.+..|..+..+++| +.+++++|.+..++
T Consensus 141 lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 220 (570)
T 2z63_A 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC 220 (570)
T ss_dssp CCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHH
T ss_pred ChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhh
Confidence 1 233333333322222111222 33333333333221
Q ss_pred -------------------------------------------------------C-CCCCCCCCEEEcccCcccccCCh
Q 035547 115 -------------------------------------------------------I-LKNQSQLSFFYISNNQISGEIPN 138 (482)
Q Consensus 115 -------------------------------------------------------~-~~~l~~L~~L~Ls~n~l~~~~~~ 138 (482)
. +..+++|++|++++|.++ .+|.
T Consensus 221 ~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~ 299 (570)
T 2z63_A 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKD 299 (570)
T ss_dssp HHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCB
T ss_pred hcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhh
Confidence 1 233344444444444444 3444
Q ss_pred hhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccC--Chhhhhc
Q 035547 139 WIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSI--PACLITK 216 (482)
Q Consensus 139 ~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~ 216 (482)
.+..+ . |++|++++|.++.++. ..+++++.|++++|.+.+..+. ..+++|++|++++|.+.+.. +..+...
T Consensus 300 ~~~~~-~--L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 372 (570)
T 2z63_A 300 FSYNF-G--WQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372 (570)
T ss_dssp CCSCC-C--CSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTC
T ss_pred hhccC-C--ccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccccccccc
Confidence 33333 3 4445555444443332 2445566666666665554443 67889999999999988543 6666666
Q ss_pred CcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcC-hhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCC
Q 035547 217 SSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFP-CWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLK 295 (482)
Q Consensus 217 ~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~ 295 (482)
. +|++|++++|.+..++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.. +..+..+++|+
T Consensus 373 ~--~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~ 448 (570)
T 2z63_A 373 T--SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF--NGIFNGLSSLE 448 (570)
T ss_dssp S--CCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC--TTTTTTCTTCC
T ss_pred C--ccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc--hhhhhcCCcCc
Confidence 6 9999999999999998889999999999999999988655 57889999999999999999876 67889999999
Q ss_pred EEecCCCCCc-ccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCC
Q 035547 296 IVDLASNKFS-GRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQ 374 (482)
Q Consensus 296 ~L~Ls~n~l~-~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 374 (482)
+|++++|.++ +.+|..+ ..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..|..+++
T Consensus 449 ~L~l~~n~l~~~~~p~~~---------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 519 (570)
T 2z63_A 449 VLKMAGNSFQENFLPDIF---------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519 (570)
T ss_dssp EEECTTCEEGGGEECSCC---------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred EEECcCCcCccccchhhh---------hcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccC
Confidence 9999999997 4566433 67899999999999999998999999999999999999999888888999999
Q ss_pred CCEEeCCCCCccccCCCCccc
Q 035547 375 IESLDLLMNNLMGKIPTSTQL 395 (482)
Q Consensus 375 L~~L~l~~N~l~~~~p~~~~~ 395 (482)
|+.|++++|+++|.+|....+
T Consensus 520 L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 520 LQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp CCEEECCSSCBCCCTTTTHHH
T ss_pred CcEEEecCCcccCCCcchHHH
Confidence 999999999999998876544
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.9e-41 Score=347.71 Aligned_cols=377 Identities=17% Similarity=0.168 Sum_probs=229.0
Q ss_pred CCcceecCCcCCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCcccc
Q 035547 1 NTSFLGTLPDSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLNEIH 79 (482)
Q Consensus 1 ~n~~~g~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l~ 79 (482)
+|++. .+|+.+. ++|++|++++|.+++..|.+|.++++|++|++++|++++..|+. ..+++|++|+|++|+|+.++
T Consensus 9 ~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp 85 (520)
T 2z7x_B 9 KNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS 85 (520)
T ss_dssp TSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEE
T ss_pred CCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecC
Confidence 46666 6888777 89999999999999988889999999999999999999887766 89999999999999998774
Q ss_pred cCCCCcccccCCCCCcCCccccEEEccCCCCCC--CCC-CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCC
Q 035547 80 LLSNNQFENQFPEISNMSSSFSKLRLASSKPWV--IPI-LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQN 156 (482)
Q Consensus 80 ~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~--l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n 156 (482)
.. ..++|++|++++|.+.. +|. ++++++|++|++++|.+++ ..+..+...+|+.|++++|
T Consensus 86 ------------~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 86 ------------CH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLG 148 (520)
T ss_dssp ------------CC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEEC
T ss_pred ------------cc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecc
Confidence 22 22889999999999885 555 8899999999999998875 3455666611288888888
Q ss_pred cc--cCCC-CCCC--------------------------CCCCccEEEccCCc-------ccccChhhhhc---------
Q 035547 157 LL--VSLQ-EPYH--------------------------ISGRTYSFSTINKS-------LIGFIPEYICK--------- 191 (482)
Q Consensus 157 ~i--~~~~-~~~~--------------------------~~~~l~~L~l~~n~-------~~~~~~~~~~~--------- 191 (482)
.+ .... ..+. .+++++.+++++|. +.+.++ .+..
T Consensus 149 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l 227 (520)
T 2z7x_B 149 ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTL 227 (520)
T ss_dssp TTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEE
T ss_pred cccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccc
Confidence 77 2221 1111 13334444444332 111111 1111
Q ss_pred ------------------CCCCCEEeCCCCcccccCChhh-----hhcC------------------------cCccceE
Q 035547 192 ------------------ATYFQVLDLSNNNLSGSIPACL-----ITKS------------------------STTLGVL 224 (482)
Q Consensus 192 ------------------l~~L~~L~l~~n~l~~~~~~~~-----~~~~------------------------~~~L~~L 224 (482)
.++|+.|++++|++.+.+|..+ .... .++|+.|
T Consensus 228 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L 307 (520)
T 2z7x_B 228 NNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNF 307 (520)
T ss_dssp EEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEE
T ss_pred cccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEE
Confidence 2345555555555555555444 2211 0023333
Q ss_pred EccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCC
Q 035547 225 NLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKF 304 (482)
Q Consensus 225 ~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l 304 (482)
++++|.+..++ ....+++|++|++++|.+++..|..+..+++|++|++++|.+++....+..+..+++|++|++++|.+
T Consensus 308 ~l~~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l 386 (520)
T 2z7x_B 308 TVSGTRMVHML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386 (520)
T ss_dssp EEESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC
T ss_pred EcCCCcccccc-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC
Confidence 33333332221 01445566666666666666555666666666666666666654321123455566666666666666
Q ss_pred cccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCC
Q 035547 305 SGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNN 384 (482)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 384 (482)
++.+|... +..+++|++|++++|.+++..|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+
T Consensus 387 ~~~l~~~~--------~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 387 SYDEKKGD--------CSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp BCCGGGCS--------CCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred Ccccccch--------hccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCc
Confidence 65343221 13455666666666666554444332 45666666666666 555555566666666666666
Q ss_pred ccccCCC--CcccCcCCCCcccCCCCCCC
Q 035547 385 LMGKIPT--STQLQSFLPTSYEGNKGLYI 411 (482)
Q Consensus 385 l~~~~p~--~~~~~~~~~~~~~~n~~~~~ 411 (482)
++. +|. ...+..+..+++.+||+.|.
T Consensus 456 l~~-l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 456 LKS-VPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CCC-CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCc-cCHHHhccCCcccEEECcCCCCccc
Confidence 663 333 22344455555666666553
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.5e-41 Score=362.75 Aligned_cols=381 Identities=18% Similarity=0.117 Sum_probs=283.1
Q ss_pred cCCcCCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCccc-CCCCCC-CCCCCCCEEECcCCCCcccccCCCC
Q 035547 7 TLPDSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFS-GPIPSL-HKSRNLNYLDLSSNNLNEIHLLSNN 84 (482)
Q Consensus 7 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~-~~l~~L~~L~Ls~N~i~~l~~l~~n 84 (482)
.+|. -.+++++|+|++|.++++.+.+|.++++|++|+|++|... .+.+.. ..+++|++|+|++|.++.+
T Consensus 18 ~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~------ 88 (844)
T 3j0a_A 18 QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL------ 88 (844)
T ss_dssp CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE------
T ss_pred CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc------
Confidence 4676 4579999999999999988999999999999999999654 444555 8999999999999988755
Q ss_pred cccccCCCCCcCCccccEEEccCCCCCC-CCC---CCCCCCCCEEEcccCcccccCC-hhhhhcCCCCccEEeCCCCccc
Q 035547 85 QFENQFPEISNMSSSFSKLRLASSKPWV-IPI---LKNQSQLSFFYISNNQISGEIP-NWIWEVGGVNLYFLNLSQNLLV 159 (482)
Q Consensus 85 ~l~~~~p~~~~~~~~L~~L~l~~n~l~~-l~~---~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~~~L~~L~L~~n~i~ 159 (482)
.|+.+..+++|++|++++|.+.. ++. +.++++|++|+|++|.+++..+ ..|..+++ |++|++++|.++
T Consensus 89 -----~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~--L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 89 -----HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS--LKSIDFSSNQIF 161 (844)
T ss_dssp -----CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSS--CCEEEEESSCCC
T ss_pred -----CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCC--CCEEECCCCcCC
Confidence 36666666999999999999984 443 9999999999999999987655 67888988 999999999987
Q ss_pred CCCCCCC-CC--CC------------------------------ccEEEccCCcccccChhhhhc---------------
Q 035547 160 SLQEPYH-IS--GR------------------------------TYSFSTINKSLIGFIPEYICK--------------- 191 (482)
Q Consensus 160 ~~~~~~~-~~--~~------------------------------l~~L~l~~n~~~~~~~~~~~~--------------- 191 (482)
...+..+ .+ ++ ++.|++++|.+.+..+..+..
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 7543222 11 22 666777766555443333321
Q ss_pred -----------------------CCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCch-hhhcccCCCCCEE
Q 035547 192 -----------------------ATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVV-LKSLANCNMLQVL 247 (482)
Q Consensus 192 -----------------------l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L 247 (482)
.++|+.|++++|.+.+..+..+.... +|++|++++|.++.+ |..|..+++|++|
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 319 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK--DLKVLNLAYNKINKIADEAFYGLDNLQVL 319 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCC--CCCEEEEESCCCCEECTTTTTTCSSCCEE
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCC--CCCEEECCCCcCCCCChHHhcCCCCCCEE
Confidence 14677777777777766666666555 888888888888766 4578888889999
Q ss_pred eCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCC------------------
Q 035547 248 DLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLS------------------ 309 (482)
Q Consensus 248 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------------------ 309 (482)
++++|.+++..+..|..+++|++|++++|.+.+.. +..+..+++|++|+|++|.+++...
T Consensus 320 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~ 397 (844)
T 3j0a_A 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ--DQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLP 397 (844)
T ss_dssp EEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCC--SSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCC
T ss_pred ECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccC--hhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccc
Confidence 99999888877888888889999999999887765 5678889999999999988765211
Q ss_pred HHHH-------------HHHHHHHhhcCCcceEEeCCCCcccccC------------------------------hHhhh
Q 035547 310 QKWL-------------LTMMIIQLKIPNIFTSIDCSSNNFEGPM------------------------------PEEMG 346 (482)
Q Consensus 310 ~~~~-------------~~~~~~~~~~~~~L~~L~Ls~n~l~~~~------------------------------~~~~~ 346 (482)
.... .......+..+++|++|++++|++++.. +..|.
T Consensus 398 ~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 477 (844)
T 3j0a_A 398 KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477 (844)
T ss_dssp CCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSS
T ss_pred ccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhc
Confidence 0000 0000011235677777777777776322 23456
Q ss_pred cCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCccccCCCCcccCcCCCCcccCCCC
Q 035547 347 RFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQSFLPTSYEGNKG 408 (482)
Q Consensus 347 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~ 408 (482)
++++|+.|+|++|++++..|..|..+++|+.|++++|++++..|.... ..+..+++.+|..
T Consensus 478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l 538 (844)
T 3j0a_A 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQL 538 (844)
T ss_dssp CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECC
T ss_pred CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcC
Confidence 677888888888888877777888999999999999999876555433 4555556666543
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.4e-40 Score=341.44 Aligned_cols=353 Identities=19% Similarity=0.210 Sum_probs=214.8
Q ss_pred CCcceecCCcCCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCcccc
Q 035547 1 NTSFLGTLPDSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLNEIH 79 (482)
Q Consensus 1 ~n~~~g~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l~ 79 (482)
+|++.+ +|..+. ++|++|++++|.++++.+.+|+++++|++|++++|.++++.++. ..+++|++|+|++|+|+.++
T Consensus 40 ~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp 116 (562)
T 3a79_B 40 NRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS 116 (562)
T ss_dssp TSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred CCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccC
Confidence 355654 887765 79999999999999988889999999999999999999988876 88999999999999998774
Q ss_pred cCCCCcccccCCCCCcCCccccEEEccCCCCCCCC--C-CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCC
Q 035547 80 LLSNNQFENQFPEISNMSSSFSKLRLASSKPWVIP--I-LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQN 156 (482)
Q Consensus 80 ~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~l~--~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n 156 (482)
.. . .++|+.|++++|.+..++ . |+++++|++|++++|++++. .+..+...+|+.|++++|
T Consensus 117 ------------~~-~-l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 117 ------------CC-P-MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp ------------SC-C-CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEES
T ss_pred ------------cc-c-cccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecc
Confidence 22 2 288999999999998654 4 89999999999999998753 344555412488998888
Q ss_pred cc--cCCCCCCC---------------------------CCCCccEEEccCCc---------------------------
Q 035547 157 LL--VSLQEPYH---------------------------ISGRTYSFSTINKS--------------------------- 180 (482)
Q Consensus 157 ~i--~~~~~~~~---------------------------~~~~l~~L~l~~n~--------------------------- 180 (482)
++ +...+..+ .+++++.+++++|.
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence 87 43322111 12344444444442
Q ss_pred -cccc----ChhhhhcCCCCCEEeCCCCcccccCChhhhh----------------------------------------
Q 035547 181 -LIGF----IPEYICKATYFQVLDLSNNNLSGSIPACLIT---------------------------------------- 215 (482)
Q Consensus 181 -~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------------------------------- 215 (482)
+.+. .+.. ...++|++|++++|.+.+.+|..+..
T Consensus 260 ~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 260 ETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp EECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEE
T ss_pred cCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEc
Confidence 0000 0000 11225556666666655555543310
Q ss_pred -----------cCcCccceEEccCCCCCc-hhhhcccCCCCCEEeCCCcccCCCc--ChhhhcCCCCcEEEcccCccccc
Q 035547 216 -----------KSSTTLGVLNLRRNNLGV-VLKSLANCNMLQVLDLRNNHISDNF--PCWLRNAFSLQVLVFRSNNFSER 281 (482)
Q Consensus 216 -----------~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~i~~~ 281 (482)
...++|++|++++|.++. +|..+..+++|++|++++|.+++.. |..+..+++|++|++++|.+++.
T Consensus 339 ~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 339 SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418 (562)
T ss_dssp ESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred cCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc
Confidence 111255555555555543 4445555555555555555555421 23455555555555555555542
Q ss_pred cCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcC-CcceEEeCCCCcccccChHhhhcCCCCCeeeccCCc
Q 035547 282 ISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIP-NIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNA 360 (482)
Q Consensus 282 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 360 (482)
.+ ...+..+++|++|++++|.+++..+. .+ ++|++|++++|+++ .+|..+..+++|++|+|++|+
T Consensus 419 ~~-~~~~~~l~~L~~L~l~~n~l~~~~~~------------~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 419 AY-DRTCAWAESILVLNLSSNMLTGSVFR------------CLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp CS-SCCCCCCTTCCEEECCSSCCCGGGGS------------SCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSC
T ss_pred cC-hhhhcCcccCCEEECCCCCCCcchhh------------hhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCC
Confidence 22 33445555555555555555543332 12 45555555555555 334334455555555555555
Q ss_pred Cccccccc-ccCCCCCCEEeCCCCCccccC
Q 035547 361 LKGSIPSS-FGNLKQIESLDLLMNNLMGKI 389 (482)
Q Consensus 361 l~~~~~~~-~~~l~~L~~L~l~~N~l~~~~ 389 (482)
++ .+|.. +..+++|+.|++++|++.|.+
T Consensus 485 l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 485 LK-SVPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp CC-CCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred CC-CCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 55 33333 555555555555555555433
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.1e-39 Score=340.46 Aligned_cols=209 Identities=20% Similarity=0.167 Sum_probs=145.1
Q ss_pred cCCCCCEEeCCCCcccc--cCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCc-ChhhhcCCC
Q 035547 191 KATYFQVLDLSNNNLSG--SIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNF-PCWLRNAFS 267 (482)
Q Consensus 191 ~l~~L~~L~l~~n~l~~--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~ 267 (482)
.+++|+.+++++|.+.. ..+....... +|+.+++..+.+..++..+..+++|+.++++.+...... +..|..+.+
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~--~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~ 446 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTI--SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 446 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCS--CCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTT
T ss_pred cccccccchhhccccccccccccchhhhh--hhhhhhccccccccccccccccccccchhhhhccccccccccccccccc
Confidence 46789999999998863 3444444444 888888888887777777777777888887776655432 345667777
Q ss_pred CcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcc-cCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhh
Q 035547 268 LQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSG-RLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMG 346 (482)
Q Consensus 268 L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 346 (482)
++.++++.|.+.+.. +..+..+++|++|++++|.+.. ..|.. +..+++|++|+|++|++++..|..|+
T Consensus 447 l~~l~ls~n~l~~~~--~~~~~~~~~L~~L~Ls~N~~~~~~~~~~---------~~~l~~L~~L~Ls~N~L~~l~~~~f~ 515 (635)
T 4g8a_A 447 LIYLDISHTHTRVAF--NGIFNGLSSLEVLKMAGNSFQENFLPDI---------FTELRNLTFLDLSQCQLEQLSPTAFN 515 (635)
T ss_dssp CCEEECTTSCCEECC--TTTTTTCTTCCEEECTTCEEGGGEECSC---------CTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred ccccccccccccccc--ccccccchhhhhhhhhhcccccccCchh---------hhhccccCEEECCCCccCCcChHHHc
Confidence 777777777777665 5566777777777777776433 33322 24667777777777777777777777
Q ss_pred cCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCccccCCCCcc-c-CcCCCCcccCCCCCCCC
Q 035547 347 RFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPTSTQ-L-QSFLPTSYEGNKGLYIP 412 (482)
Q Consensus 347 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~-~-~~~~~~~~~~n~~~~~~ 412 (482)
++++|++|+|++|+|++..|..|..+++|++||+++|++++..|.... + ..+..+++.+||+.|.+
T Consensus 516 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 516 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 777777777777777766666777777777777777777776665432 2 34566677777777744
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.1e-40 Score=335.61 Aligned_cols=357 Identities=17% Similarity=0.171 Sum_probs=275.2
Q ss_pred CCcceecCCcCCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCccccc
Q 035547 1 NTSFLGTLPDSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIHL 80 (482)
Q Consensus 1 ~n~~~g~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~ 80 (482)
+|++.+..|++|.++++|++|++++|.+++..|.+|+++++|++|++++|+++++++. .+++|++|++++|+++.++
T Consensus 30 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~- 106 (520)
T 2z7x_B 30 QNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALP- 106 (520)
T ss_dssp SSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCC-
T ss_pred CCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCcccccc-
Confidence 4788888888999999999999999999998899999999999999999999976654 8999999999999987541
Q ss_pred CCCCcccccCCCCCcCCccccEEEccCCCCCCCCCCCCCCCC--CEEEcccCcc--cccCChhhhhcC------------
Q 035547 81 LSNNQFENQFPEISNMSSSFSKLRLASSKPWVIPILKNQSQL--SFFYISNNQI--SGEIPNWIWEVG------------ 144 (482)
Q Consensus 81 l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~l~~~~~l~~L--~~L~Ls~n~l--~~~~~~~~~~l~------------ 144 (482)
+|..+..+++|+.|++++|.+.. ..+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 107 ---------~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~ 176 (520)
T 2z7x_B 107 ---------ICKEFGNMSQLKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176 (520)
T ss_dssp ---------CCGGGGGCTTCCEEEEEESSCCG-GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSS
T ss_pred ---------chhhhccCCcceEEEecCcccch-hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCc
Confidence 24444444777777777777664 225555556 7777777776 445555444422
Q ss_pred --------------C-------------------------------------------------------CCccEEeCCC
Q 035547 145 --------------G-------------------------------------------------------VNLYFLNLSQ 155 (482)
Q Consensus 145 --------------~-------------------------------------------------------~~L~~L~L~~ 155 (482)
. .+|++|++++
T Consensus 177 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 256 (520)
T 2z7x_B 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256 (520)
T ss_dssp CCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEE
T ss_pred chhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeec
Confidence 0 1256666666
Q ss_pred Cccc-CCCCCC-----CCCCCccEEEccCCcccccCh-hhhhcC---CCCCEEeCCCCcccccCChhhhhcCcCccceEE
Q 035547 156 NLLV-SLQEPY-----HISGRTYSFSTINKSLIGFIP-EYICKA---TYFQVLDLSNNNLSGSIPACLITKSSTTLGVLN 225 (482)
Q Consensus 156 n~i~-~~~~~~-----~~~~~l~~L~l~~n~~~~~~~-~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ 225 (482)
|+++ .++..+ ..+++++.+++++|.+ .+| ..+..+ .+|+.|++++|.+.. .+. .... ++|++|+
T Consensus 257 n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~-~~~-~~~l--~~L~~L~ 330 (520)
T 2z7x_B 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVH-MLC-PSKI--SPFLHLD 330 (520)
T ss_dssp EEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCC-CCC-CSSC--CCCCEEE
T ss_pred ccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccc-ccc-hhhC--CcccEEE
Confidence 6665 455444 3456666666666666 233 334333 567788888877652 221 1233 3999999
Q ss_pred ccCCCCCc-hhhhcccCCCCCEEeCCCcccCC--CcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCC
Q 035547 226 LRRNNLGV-VLKSLANCNMLQVLDLRNNHISD--NFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASN 302 (482)
Q Consensus 226 l~~n~l~~-~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n 302 (482)
+++|.++. +|..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+.+..+ ...+..+++|++|++++|
T Consensus 331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~-~~~~~~l~~L~~L~Ls~N 409 (520)
T 2z7x_B 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK-KGDCSWTKSLLSLNMSSN 409 (520)
T ss_dssp CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG-GCSCCCCTTCCEEECCSS
T ss_pred eECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccc-cchhccCccCCEEECcCC
Confidence 99999976 78889999999999999999997 456789999999999999999998443 456888999999999999
Q ss_pred CCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCccccccc-ccCCCCCCEEeCC
Q 035547 303 KFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSS-FGNLKQIESLDLL 381 (482)
Q Consensus 303 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~l~ 381 (482)
.+++..+.. ..++|++|++++|+++ .+|..+..+++|++|+|++|+++ .+|.. +..+++|+.|+++
T Consensus 410 ~l~~~~~~~-----------l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 410 ILTDTIFRC-----------LPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp CCCGGGGGS-----------CCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCCcchhhh-----------hcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECc
Confidence 998776642 2379999999999999 67777779999999999999999 56655 8999999999999
Q ss_pred CCCccccCC
Q 035547 382 MNNLMGKIP 390 (482)
Q Consensus 382 ~N~l~~~~p 390 (482)
+|+++|.++
T Consensus 477 ~N~~~c~c~ 485 (520)
T 2z7x_B 477 TNPWDCSCP 485 (520)
T ss_dssp SSCBCCCHH
T ss_pred CCCCcccCC
Confidence 999996554
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=9e-39 Score=322.34 Aligned_cols=346 Identities=17% Similarity=0.136 Sum_probs=295.8
Q ss_pred CCcceecCCcCCCCCCCCCEEeCCCCcCCCCC-chhccCCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCccc
Q 035547 1 NTSFLGTLPDSIGTLENLTRVDLRSYNFTRPI-PTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLNEI 78 (482)
Q Consensus 1 ~n~~~g~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l 78 (482)
+|+|.+..|++|+++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..+.. ..+++|++|++++|+++..
T Consensus 39 ~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 118 (455)
T 3v47_A 39 LNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA 118 (455)
T ss_dssp SSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTH
T ss_pred CCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCcc
Confidence 57889988999999999999999999998544 678999999999999999999887776 8999999999999988742
Q ss_pred ccCCCCcccccCCCCCcCCccccEEEccCCCCCCC-CC--CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCC
Q 035547 79 HLLSNNQFENQFPEISNMSSSFSKLRLASSKPWVI-PI--LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQ 155 (482)
Q Consensus 79 ~~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~l-~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~ 155 (482)
. . .+..+...++|++|++++|.+..+ |. +.++++|++|++++|++++..+..+..+....++.|++++
T Consensus 119 ~-~--------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 119 V-L--------SGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp H-H--------HSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred c-c--------CcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 0 0 012233348999999999999966 54 8999999999999999998889988888656699999999
Q ss_pred CcccCCCCCC---------CCCCCccEEEccCCcccccChhhhhcC---CCCCEEeCCCCccccc----------CChhh
Q 035547 156 NLLVSLQEPY---------HISGRTYSFSTINKSLIGFIPEYICKA---TYFQVLDLSNNNLSGS----------IPACL 213 (482)
Q Consensus 156 n~i~~~~~~~---------~~~~~l~~L~l~~n~~~~~~~~~~~~l---~~L~~L~l~~n~l~~~----------~~~~~ 213 (482)
|.++.++... +..++|+.|++++|.+.+..|..+... ++|+.|++++|...+. .+..+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 9999987543 245799999999999999888887665 8899999999865432 22233
Q ss_pred hhcCcCccceEEccCCCCCch-hhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCC
Q 035547 214 ITKSSTTLGVLNLRRNNLGVV-LKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWP 292 (482)
Q Consensus 214 ~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~ 292 (482)
.....++|++|++++|.+..+ |..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++.. +..+..++
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~ 347 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID--SRMFENLD 347 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--GGGGTTCT
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC--hhHhcCcc
Confidence 333335899999999999765 567899999999999999999988899999999999999999998876 57789999
Q ss_pred CCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCccccc
Q 035547 293 LLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIP 366 (482)
Q Consensus 293 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 366 (482)
+|++|+|++|.+++..|..+ ..+++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 348 ~L~~L~Ls~N~l~~~~~~~~---------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGDQSF---------LGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCCEEECCSSCCCEECTTTT---------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCEEECCCCcccccChhhc---------cccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 99999999999998877554 678999999999999998888888999999999999999997665
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-38 Score=329.44 Aligned_cols=365 Identities=16% Similarity=0.157 Sum_probs=291.5
Q ss_pred CCcceecCCcCCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCC--CCCCCCCCCCCEEECcCCC-Ccc
Q 035547 1 NTSFLGTLPDSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGP--IPSLHKSRNLNYLDLSSNN-LNE 77 (482)
Q Consensus 1 ~n~~~g~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~Ls~N~-i~~ 77 (482)
+|++.+..|++|+++++|++|++++|.+++..+..|+++++|++|++++|.+++. ++....+++|++|++++|. ++.
T Consensus 59 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 138 (549)
T 2z81_A 59 SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE 138 (549)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred CCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccc
Confidence 5788998899999999999999999999998888899999999999999999864 2334899999999999997 443
Q ss_pred cc-------------cCCCCcccccCCCCCcCCccccEEEccCCCCCCCCC--CCCCCCCCEEEcccCcccccC--Chhh
Q 035547 78 IH-------------LLSNNQFENQFPEISNMSSSFSKLRLASSKPWVIPI--LKNQSQLSFFYISNNQISGEI--PNWI 140 (482)
Q Consensus 78 l~-------------~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~--~~~~ 140 (482)
++ ++++|.+.+..|..+...++|+.|++++|.+..+|. +..+++|++|++++|++++.. |..+
T Consensus 139 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 218 (549)
T 2z81_A 139 IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPV 218 (549)
T ss_dssp ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSS
T ss_pred cCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccch
Confidence 32 556777777777777666888888888888777766 567899999999999998531 1111
Q ss_pred -----------------------------hhcCCCCccEEeCCCCcccCCCCCC--------------------------
Q 035547 141 -----------------------------WEVGGVNLYFLNLSQNLLVSLQEPY-------------------------- 165 (482)
Q Consensus 141 -----------------------------~~l~~~~L~~L~L~~n~i~~~~~~~-------------------------- 165 (482)
..+.. |+.+++++|.+..+....
T Consensus 219 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~--L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~ 296 (549)
T 2z81_A 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE--LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF 296 (549)
T ss_dssp CCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTT--CCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCG
T ss_pred hhhhhcccceeccccccchhHHHHHHHHhhhhcc--ccccccccccccccccccccchhhhhhhcccccccccccccchh
Confidence 11222 555555555544332100
Q ss_pred ---------C-CCCCccEEEccCCcccccChhhh-hcCCCCCEEeCCCCcccccCChh---hhhcCcCccceEEccCCCC
Q 035547 166 ---------H-ISGRTYSFSTINKSLIGFIPEYI-CKATYFQVLDLSNNNLSGSIPAC---LITKSSTTLGVLNLRRNNL 231 (482)
Q Consensus 166 ---------~-~~~~l~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~---~~~~~~~~L~~L~l~~n~l 231 (482)
+ ..++++.+++++|.+.. +|..+ ..+++|++|++++|++.+.+|.. +...+ +|++|++++|.+
T Consensus 297 ~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~--~L~~L~Ls~N~l 373 (549)
T 2z81_A 297 YLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP--SLQTLVLSQNHL 373 (549)
T ss_dssp GGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSST--TCCEEECTTSCC
T ss_pred hhcccchhhhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccc--cCcEEEccCCcc
Confidence 0 13578888888888865 55544 68999999999999998766543 33444 999999999999
Q ss_pred Cchhh---hcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccC
Q 035547 232 GVVLK---SLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRL 308 (482)
Q Consensus 232 ~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 308 (482)
+.++. .+..+++|++|++++|.+++ +|..+..+++|++|++++|++++.. ..+ .++|++|++++|.+++..
T Consensus 374 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~~l~---~~~--~~~L~~L~Ls~N~l~~~~ 447 (549)
T 2z81_A 374 RSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRVVK---TCI--PQTLEVLDVSNNNLDSFS 447 (549)
T ss_dssp CCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSCCSCCC---TTS--CTTCSEEECCSSCCSCCC
T ss_pred cccccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCCccccc---chh--cCCceEEECCCCChhhhc
Confidence 88863 58899999999999999996 6778889999999999999998653 222 368999999999999754
Q ss_pred CHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCcccc
Q 035547 309 SQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGK 388 (482)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 388 (482)
..+++|++|++++|+++ .+|. ...+++|+.|+|++|++++..|..+..+++|+.|++++|++.|.
T Consensus 448 -------------~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 448 -------------LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp -------------CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred -------------ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 36889999999999999 5665 46799999999999999988888899999999999999999987
Q ss_pred CCC
Q 035547 389 IPT 391 (482)
Q Consensus 389 ~p~ 391 (482)
+|.
T Consensus 513 ~~~ 515 (549)
T 2z81_A 513 CPR 515 (549)
T ss_dssp HHH
T ss_pred Ccc
Confidence 764
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.2e-38 Score=332.69 Aligned_cols=208 Identities=19% Similarity=0.193 Sum_probs=174.7
Q ss_pred CCccEEEccCCccc--ccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchh--hhcccCCCC
Q 035547 169 GRTYSFSTINKSLI--GFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVL--KSLANCNML 244 (482)
Q Consensus 169 ~~l~~L~l~~n~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~l~~L 244 (482)
++++.+++++|.+. +..+..+..+.+|+.+++..+... ..+..+.... +|+.+++.++...... ..+..++++
T Consensus 371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~--~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLE--QLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCT--TCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred cccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccc--cccchhhhhcccccccccccccccccc
Confidence 34555556665553 235667778899999999999887 4555555555 9999999988774443 367788999
Q ss_pred CEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcC
Q 035547 245 QVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIP 324 (482)
Q Consensus 245 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 324 (482)
+.++++.|.+.+..+..+..++.+++|++++|.+.+... +..+..+++|++|+|++|.+++..|..| ..+
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~-~~~~~~l~~L~~L~Ls~N~L~~l~~~~f---------~~l 517 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQCQLEQLSPTAF---------NSL 517 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE-CSCCTTCTTCCEEECTTSCCCEECTTTT---------TTC
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccC-chhhhhccccCEEECCCCccCCcChHHH---------cCC
Confidence 999999999999889999999999999999998654332 6789999999999999999998888654 689
Q ss_pred CcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCC-CCCCEEeCCCCCccccC
Q 035547 325 NIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNL-KQIESLDLLMNNLMGKI 389 (482)
Q Consensus 325 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~ 389 (482)
++|++|+|++|++++..|..|+++++|+.|+|++|+|++..|..+..+ ++|++|++++|++.|.+
T Consensus 518 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp TTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 999999999999999999999999999999999999998999999988 58999999999999544
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.2e-38 Score=325.74 Aligned_cols=334 Identities=18% Similarity=0.144 Sum_probs=260.1
Q ss_pred CCcceecCCcCCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCccccc
Q 035547 1 NTSFLGTLPDSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIHL 80 (482)
Q Consensus 1 ~n~~~g~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~ 80 (482)
+|+|.+..|++|.++++|++|++++|.++++.|.+|+++++|++|++++|+++.+++. .+++|++|++++|+++.++
T Consensus 61 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~- 137 (562)
T 3a79_B 61 QNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLP- 137 (562)
T ss_dssp SSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCC-
T ss_pred CCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccC-
Confidence 5788888888999999999999999999998899999999999999999999976665 8999999999999998662
Q ss_pred CCCCcccccCCCCCcCCccccEEEccCCCCCCCCCCCCCCCC--CEEEcccCcc--cccCChhhhhcC------------
Q 035547 81 LSNNQFENQFPEISNMSSSFSKLRLASSKPWVIPILKNQSQL--SFFYISNNQI--SGEIPNWIWEVG------------ 144 (482)
Q Consensus 81 l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~l~~~~~l~~L--~~L~Ls~n~l--~~~~~~~~~~l~------------ 144 (482)
+|..+...++|+.|++++|.+...+ +..+++| ++|++++|.+ ++..|..+..+.
T Consensus 138 ---------~p~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~ 207 (562)
T 3a79_B 138 ---------VCKEFGNLTKLTFLGLSAAKFRQLD-LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207 (562)
T ss_dssp ---------CCGGGGGCTTCCEEEEECSBCCTTT-TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSS
T ss_pred ---------chHhhcccCcccEEecCCCccccCc-hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCcc
Confidence 2344444488999999999887532 4444555 9999999988 666665554432
Q ss_pred --------------C-----------------------------------------------------CCccEEeCCCCc
Q 035547 145 --------------G-----------------------------------------------------VNLYFLNLSQNL 157 (482)
Q Consensus 145 --------------~-----------------------------------------------------~~L~~L~L~~n~ 157 (482)
. .+|++|++++|+
T Consensus 208 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 287 (562)
T 3a79_B 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287 (562)
T ss_dssp CCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEE
T ss_pred chhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccE
Confidence 1 136666666666
Q ss_pred cc-CCCCCCC-----CC--------------------------CCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcc
Q 035547 158 LV-SLQEPYH-----IS--------------------------GRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNL 205 (482)
Q Consensus 158 i~-~~~~~~~-----~~--------------------------~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 205 (482)
++ .++..++ .+ .+++.|++++|.+..... ...+++|++|++++|++
T Consensus 288 l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l 365 (562)
T 3a79_B 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVF 365 (562)
T ss_dssp ECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCC
T ss_pred eeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCcc
Confidence 65 4444331 11 224445555554432210 16788999999999999
Q ss_pred cccCChhhhhcCcCccceEEccCCCCCchh---hhcccCCCCCEEeCCCcccCC-CcChhhhcCCCCcEEEcccCccccc
Q 035547 206 SGSIPACLITKSSTTLGVLNLRRNNLGVVL---KSLANCNMLQVLDLRNNHISD-NFPCWLRNAFSLQVLVFRSNNFSER 281 (482)
Q Consensus 206 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~ 281 (482)
.+..|..+.... +|++|++++|.++.++ ..+..+++|++|++++|.+++ ..+..+..+++|++|++++|.+++.
T Consensus 366 ~~~~~~~~~~l~--~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 443 (562)
T 3a79_B 366 TDSVFQGCSTLK--RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443 (562)
T ss_dssp CTTTTTTCCSCS--SCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGG
T ss_pred ccchhhhhcccC--CCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcc
Confidence 988888887776 9999999999998654 568899999999999999998 5555688999999999999999876
Q ss_pred cCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcC
Q 035547 282 ISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNAL 361 (482)
Q Consensus 282 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 361 (482)
.+ ..+. ++|++|+|++|.++. +|..+ ..+++|++|++++|++++..+..+..+++|+.|++++|.+
T Consensus 444 ~~--~~l~--~~L~~L~L~~N~l~~-ip~~~---------~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 444 VF--RCLP--PKVKVLDLHNNRIMS-IPKDV---------THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp GG--SSCC--TTCSEEECCSSCCCC-CCTTT---------TSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred hh--hhhc--CcCCEEECCCCcCcc-cChhh---------cCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 52 2222 799999999999984 55433 3789999999999999964444489999999999999999
Q ss_pred cccc
Q 035547 362 KGSI 365 (482)
Q Consensus 362 ~~~~ 365 (482)
....
T Consensus 510 ~c~c 513 (562)
T 3a79_B 510 DCTC 513 (562)
T ss_dssp CCCH
T ss_pred CCCc
Confidence 8543
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.5e-38 Score=316.32 Aligned_cols=329 Identities=21% Similarity=0.254 Sum_probs=193.3
Q ss_pred CcceecCCcCCCCCCCCCEEeCCCCcCCCCCchhccCCCCC-------------CEEeCCCCcccCCCCCCCCCCCCCEE
Q 035547 2 TSFLGTLPDSIGTLENLTRVDLRSYNFTRPIPTSMANLAQL-------------FHMDFSSNHFSGPIPSLHKSRNLNYL 68 (482)
Q Consensus 2 n~~~g~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------~~L~L~~n~l~~~~~~~~~l~~L~~L 68 (482)
|++ |++|++|+++++|++|++++|.+++.+|.+++.+.+| ++|++++|.+++++. ..++|++|
T Consensus 21 n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~---~~~~L~~L 96 (454)
T 1jl5_A 21 SNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE---LPPHLESL 96 (454)
T ss_dssp --------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS---CCTTCSEE
T ss_pred Cch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC---CcCCCCEE
Confidence 566 8888888888888888888888887788888877654 888888888776543 24677788
Q ss_pred ECcCCCCcccc---------cCCCCcccccCCCCCcCCccccEEEccCCCCCCCCCCCCCCCCCEEEcccCcccccCChh
Q 035547 69 DLSSNNLNEIH---------LLSNNQFENQFPEISNMSSSFSKLRLASSKPWVIPILKNQSQLSFFYISNNQISGEIPNW 139 (482)
Q Consensus 69 ~Ls~N~i~~l~---------~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~ 139 (482)
++++|.++.++ ++++|.+.+. |.. .++|++|++++|.++.+|.++++++|++|++++|++++ +|..
T Consensus 97 ~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~-lp~~ 171 (454)
T 1jl5_A 97 VASCNSLTELPELPQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK-LPDL 171 (454)
T ss_dssp ECCSSCCSSCCCCCTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC-CCCC
T ss_pred EccCCcCCccccccCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc-cCCC
Confidence 88777766443 3344444431 211 15667777777776666666667777777777776663 4443
Q ss_pred hhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcC
Q 035547 140 IWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSST 219 (482)
Q Consensus 140 ~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 219 (482)
+ .. |++|++++|+++.++ .+..+++|+.|++++|.+.+ +|.. .++|+.|++++|.+. .+|. +....
T Consensus 172 ~---~~--L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~-- 237 (454)
T 1jl5_A 172 P---PS--LEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLP-- 237 (454)
T ss_dssp C---TT--CCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCT--
T ss_pred c---cc--ccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCC--
Confidence 2 23 666777777666654 34466666666666666654 2221 135666666666665 5553 44433
Q ss_pred ccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEec
Q 035547 220 TLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDL 299 (482)
Q Consensus 220 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~L 299 (482)
+|++|++++|.++.+|.. +++|++|++++|.+++ .|.. .++|++|++++|.+++.... .++|++|++
T Consensus 238 ~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~------~~~L~~L~l 304 (454)
T 1jl5_A 238 FLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSEL------PPNLYYLNA 304 (454)
T ss_dssp TCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCC------CTTCCEEEC
T ss_pred CCCEEECCCCcCCccccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCc------CCcCCEEEC
Confidence 666666666666665542 3566666666666665 3322 25666666666666653211 145666666
Q ss_pred CCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEe
Q 035547 300 ASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLD 379 (482)
Q Consensus 300 s~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 379 (482)
++|.+++.. ..+++|++|++++|++++ +|.. +++|+.|++++|+++ .+|. .+++|++|+
T Consensus 305 ~~N~l~~i~-------------~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~ 363 (454)
T 1jl5_A 305 SSNEIRSLC-------------DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLH 363 (454)
T ss_dssp CSSCCSEEC-------------CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEE
T ss_pred cCCcCCccc-------------CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEE
Confidence 666655421 123466777777777764 3332 466777777777776 4554 356677777
Q ss_pred CCCCCccc
Q 035547 380 LLMNNLMG 387 (482)
Q Consensus 380 l~~N~l~~ 387 (482)
+++|++++
T Consensus 364 L~~N~l~~ 371 (454)
T 1jl5_A 364 VEYNPLRE 371 (454)
T ss_dssp CCSSCCSS
T ss_pred CCCCCCCc
Confidence 77777766
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.9e-37 Score=313.15 Aligned_cols=315 Identities=16% Similarity=0.113 Sum_probs=207.8
Q ss_pred CEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCcccccCCCCcccccCCCCCcCC
Q 035547 19 TRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEISNMS 97 (482)
Q Consensus 19 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~~~~ 97 (482)
+.++.++++++. +|..+. ++++.|+|++|.++++.+.. ..+++|++|+|++|.++.+. |..+..+
T Consensus 14 ~~v~c~~~~l~~-ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-----------~~~~~~l 79 (477)
T 2id5_A 14 RAVLCHRKRFVA-VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE-----------PGAFNNL 79 (477)
T ss_dssp TEEECCSCCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-----------TTTTTTC
T ss_pred CEEEeCCCCcCc-CCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeC-----------hhhhhCC
Confidence 455555555555 344332 45666666666666655544 56666666666666555432 3333333
Q ss_pred ccccEEEccCCCCCCCCC--CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCC-CCCCccEE
Q 035547 98 SSFSKLRLASSKPWVIPI--LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYH-ISGRTYSF 174 (482)
Q Consensus 98 ~~L~~L~l~~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~-~~~~l~~L 174 (482)
++|+.|++++|.+..+|. |.++++|++|++++|++.+..+..|..+.. |++|++++|.++.+.+..+ .+++|+.|
T Consensus 80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN--LKSLEVGDNDLVYISHRAFSGLNSLEQL 157 (477)
T ss_dssp TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT--CCEEEECCTTCCEECTTSSTTCTTCCEE
T ss_pred ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc--CCEEECCCCccceeChhhccCCCCCCEE
Confidence 666666666666666654 677777777777777777666777777766 7777777777777655444 66777777
Q ss_pred EccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCC-CchhhhcccCCCCCEEeCCCcc
Q 035547 175 STINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNL-GVVLKSLANCNMLQVLDLRNNH 253 (482)
Q Consensus 175 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~l~~L~~L~Ls~N~ 253 (482)
++++|.+.+..+..+..+++|+.|++++|.+.+..+..+.... +|++|++++|.. +.+|.......+|++|++++|.
T Consensus 158 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 235 (477)
T 2id5_A 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY--RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235 (477)
T ss_dssp EEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCT--TCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC
T ss_pred ECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCc--ccceeeCCCCccccccCcccccCccccEEECcCCc
Confidence 7777777766677788888888888888888766555665555 788888887654 5566655555678888888888
Q ss_pred cCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCC
Q 035547 254 ISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCS 333 (482)
Q Consensus 254 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 333 (482)
+++..+..+..+++|++|++++|.+++.. +..+..+++|++|+|++|.+++..+..+ ..+++|++|+++
T Consensus 236 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~---------~~l~~L~~L~L~ 304 (477)
T 2id5_A 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIE--GSMLHELLRLQEIQLVGGQLAVVEPYAF---------RGLNYLRVLNVS 304 (477)
T ss_dssp CCSCCHHHHTTCTTCCEEECCSSCCCEEC--TTSCTTCTTCCEEECCSSCCSEECTTTB---------TTCTTCCEEECC
T ss_pred ccccCHHHhcCccccCeeECCCCcCCccC--hhhccccccCCEEECCCCccceECHHHh---------cCcccCCEEECC
Confidence 87755567778888888888888887665 4566777777777777777765544322 345555555555
Q ss_pred CCcccccChHhhhcCCCCCeeeccCCcCc
Q 035547 334 SNNFEGPMPEEMGRFKSLYAPNMSHNALK 362 (482)
Q Consensus 334 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 362 (482)
+|.+++..+..|..+++|+.|+|++|.+.
T Consensus 305 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 305 GNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp SSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 55555555555555556666666666554
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.1e-36 Score=307.63 Aligned_cols=326 Identities=21% Similarity=0.255 Sum_probs=154.3
Q ss_pred CCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccccCCCCcccccCC
Q 035547 12 IGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIHLLSNNQFENQFP 91 (482)
Q Consensus 12 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p 91 (482)
+..+++|++|++++|.+++..+ +.++++|++|++++|.+.+.++ ...+++|++|++++|.++.++
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~------------ 128 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDID------------ 128 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG------------
T ss_pred hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCCh------------
Confidence 3344444444444444444222 4444444444444444443333 344444444444444444331
Q ss_pred CCCcCCccccEEEccCCCCCCCCCCCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCc
Q 035547 92 EISNMSSSFSKLRLASSKPWVIPILKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRT 171 (482)
Q Consensus 92 ~~~~~~~~L~~L~l~~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l 171 (482)
. +..+++|++|++++|.+..++.+..+++|++|+++ |.+.+. + .+..++. |+.|++++|.++.++. +..+++|
T Consensus 129 ~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~--L~~L~l~~n~l~~~~~-l~~l~~L 201 (466)
T 1o6v_A 129 P-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDL-K-PLANLTT--LERLDISSNKVSDISV-LAKLTNL 201 (466)
T ss_dssp G-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE-ESCCCC-G-GGTTCTT--CCEEECCSSCCCCCGG-GGGCTTC
T ss_pred H-HcCCCCCCEEECCCCccCCChhhccCCcccEeecC-CcccCc-h-hhccCCC--CCEEECcCCcCCCChh-hccCCCC
Confidence 0 11114444444444444444444444444444443 222211 1 1444444 5555555555554421 2244555
Q ss_pred cEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCC
Q 035547 172 YSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRN 251 (482)
Q Consensus 172 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~ 251 (482)
+.|++++|.+.+..+ +..+++|+.|++++|++.+ ++ .+.... +|++|++++|.++.++. +..+++|++|++++
T Consensus 202 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~l~~l~--~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~ 274 (466)
T 1o6v_A 202 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG-TLASLT--NLTDLDLANNQISNLAP-LSGLTKLTELKLGA 274 (466)
T ss_dssp SEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCT--TCSEEECCSSCCCCCGG-GTTCTTCSEEECCS
T ss_pred CEEEecCCccccccc--ccccCCCCEEECCCCCccc-ch-hhhcCC--CCCEEECCCCccccchh-hhcCCCCCEEECCC
Confidence 555555555554333 4445555555555555542 22 233333 55555555555554443 44555555555555
Q ss_pred cccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEe
Q 035547 252 NHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSID 331 (482)
Q Consensus 252 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 331 (482)
|.+++..+ +..+++|++|++++|++.+..+ +..+++|++|++++|.+++..+ +..+++|++|+
T Consensus 275 n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~-----------~~~l~~L~~L~ 337 (466)
T 1o6v_A 275 NQISNISP--LAGLTALTNLELNENQLEDISP----ISNLKNLTYLTLYFNNISDISP-----------VSSLTKLQRLF 337 (466)
T ss_dssp SCCCCCGG--GTTCTTCSEEECCSSCCSCCGG----GGGCTTCSEEECCSSCCSCCGG-----------GGGCTTCCEEE
T ss_pred CccCcccc--ccCCCccCeEEcCCCcccCchh----hcCCCCCCEEECcCCcCCCchh-----------hccCccCCEeE
Confidence 55554322 4455555555555555554321 4455555555555555554433 13455555555
Q ss_pred CCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCccc
Q 035547 332 CSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMG 387 (482)
Q Consensus 332 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 387 (482)
+++|.+++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 555555543 244555555555555555554443 4555555555555555554
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.9e-36 Score=303.00 Aligned_cols=346 Identities=22% Similarity=0.235 Sum_probs=296.1
Q ss_pred CCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccccCCCCcccccCCCC
Q 035547 14 TLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEI 93 (482)
Q Consensus 14 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~ 93 (482)
.+++++.|+++++.+.. +| .+..+++|++|++++|.+++.++ ...+++|++|++++|.++.++ .
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~------------~- 107 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT------------P- 107 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG------------G-
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccCh------------h-
Confidence 36789999999999987 45 48899999999999999998766 789999999999999988663 1
Q ss_pred CcCCccccEEEccCCCCCCCCCCCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccE
Q 035547 94 SNMSSSFSKLRLASSKPWVIPILKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYS 173 (482)
Q Consensus 94 ~~~~~~L~~L~l~~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~ 173 (482)
+..+++|+.|++++|.+..++.+.++++|++|++++|.+.+ ++ .+..+.. |+.|+++ |.+...++ +..+++|+.
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~--L~~L~l~-~~~~~~~~-~~~l~~L~~ 181 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD-IS-ALSGLTS--LQQLSFG-NQVTDLKP-LANLTTLER 181 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECC-CG-GGTTCTT--CSEEEEE-ESCCCCGG-GTTCTTCCE
T ss_pred hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCC-Ch-hhccCCc--ccEeecC-CcccCchh-hccCCCCCE
Confidence 22238999999999999999889999999999999999984 44 4778887 9999996 56665543 448899999
Q ss_pred EEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcc
Q 035547 174 FSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNH 253 (482)
Q Consensus 174 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~ 253 (482)
|++++|.+.+. ..+..+++|+.|++++|.+.+..| +.... +|++|++++|.++.++ .+..+++|++|++++|.
T Consensus 182 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~--~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~ 254 (466)
T 1o6v_A 182 LDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILT--NLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQ 254 (466)
T ss_dssp EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCT--TCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC
T ss_pred EECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccC--CCCEEECCCCCcccch-hhhcCCCCCEEECCCCc
Confidence 99999998774 348899999999999999986554 44455 9999999999998885 68889999999999999
Q ss_pred cCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCC
Q 035547 254 ISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCS 333 (482)
Q Consensus 254 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 333 (482)
+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 255 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~-----------~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 255 ISNLAP--LSGLTKLTELKLGANQISNISP----LAGLTALTNLELNENQLEDISP-----------ISNLKNLTYLTLY 317 (466)
T ss_dssp CCCCGG--GTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCSCCGG-----------GGGCTTCSEEECC
T ss_pred cccchh--hhcCCCCCEEECCCCccCcccc----ccCCCccCeEEcCCCcccCchh-----------hcCCCCCCEEECc
Confidence 998654 8899999999999999997652 7889999999999999997654 3678999999999
Q ss_pred CCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCccccCCCCcccCcCCCCcccCCCCCC
Q 035547 334 SNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQSFLPTSYEGNKGLY 410 (482)
Q Consensus 334 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~~ 410 (482)
+|.+++..| ++.+++|++|++++|.+++. ..+..+++|+.|++++|++++..| ...+..+..+.+.+|++..
T Consensus 318 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 318 FNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred CCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 999998766 78999999999999999954 478999999999999999998877 5566777777788887654
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.2e-36 Score=298.52 Aligned_cols=332 Identities=16% Similarity=0.176 Sum_probs=234.9
Q ss_pred CCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCcccccCCCCcccccCCC
Q 035547 14 TLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPE 92 (482)
Q Consensus 14 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~ 92 (482)
.++++++|++++|.++.+.+..|..+++|++|++++|.+.++++.. ..+++|++|++++|+++.++ |.
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----------~~ 111 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP-----------PH 111 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-----------TT
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCC-----------HH
Confidence 4588899999998888865666788899999999999988877755 88899999999988877553 44
Q ss_pred CCcCCccccEEEccCCCCCCCCC--CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCC
Q 035547 93 ISNMSSSFSKLRLASSKPWVIPI--LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGR 170 (482)
Q Consensus 93 ~~~~~~~L~~L~l~~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~ 170 (482)
.+...++|+.|++++|.+..+|. |.++++|++|++++|.+++..+..+..++. |++|++++|+++.++
T Consensus 112 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~~-------- 181 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS--LQNLQLSSNRLTHVD-------- 181 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTT--CCEEECCSSCCSBCC--------
T ss_pred HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCC--CCEEECCCCcCCccc--------
Confidence 44444788888888888887776 678888888888888887666777777777 888888888777652
Q ss_pred ccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCC
Q 035547 171 TYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLR 250 (482)
Q Consensus 171 l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls 250 (482)
+..+++|+.|++++|.+.+ ++ ... +|++|++++|.++.+|... .++|+.|+++
T Consensus 182 ------------------~~~l~~L~~L~l~~n~l~~-~~----~~~--~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~ 234 (390)
T 3o6n_A 182 ------------------LSLIPSLFHANVSYNLLST-LA----IPI--AVEELDASHNSINVVRGPV--NVELTILKLQ 234 (390)
T ss_dssp ------------------GGGCTTCSEEECCSSCCSE-EE----CCS--SCSEEECCSSCCCEEECCC--CSSCCEEECC
T ss_pred ------------------cccccccceeecccccccc-cC----CCC--cceEEECCCCeeeeccccc--cccccEEECC
Confidence 3445566666666666552 11 112 6666677766666665432 3567777777
Q ss_pred CcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEE
Q 035547 251 NNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSI 330 (482)
Q Consensus 251 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L 330 (482)
+|.+++. ..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++.... ...+++|++|
T Consensus 235 ~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~----------~~~l~~L~~L 300 (390)
T 3o6n_A 235 HNNLTDT--AWLLNYPGLVEVDLSYNELEKIM--YHPFVKMQRLERLYISNNRLVALNLY----------GQPIPTLKVL 300 (390)
T ss_dssp SSCCCCC--GGGGGCTTCSEEECCSSCCCEEE--SGGGTTCSSCCEEECCSSCCCEEECS----------SSCCTTCCEE
T ss_pred CCCCccc--HHHcCCCCccEEECCCCcCCCcC--hhHccccccCCEEECCCCcCcccCcc----------cCCCCCCCEE
Confidence 7776652 45666677777777777776654 45566677777777777776653221 1346777777
Q ss_pred eCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCccccCCCCcccCcCCCCcccCCCCCC
Q 035547 331 DCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQSFLPTSYEGNKGLY 410 (482)
Q Consensus 331 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~~ 410 (482)
++++|+++ .+|..+..+++|++|++++|+++. ++ +..+++|+.|++++|++.+.... ..+..+....+.+++..|
T Consensus 301 ~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c 375 (390)
T 3o6n_A 301 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHC 375 (390)
T ss_dssp ECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCC
T ss_pred ECCCCcce-ecCccccccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCcee
Confidence 77777777 466678889999999999999984 44 77889999999999999864322 123344455556666666
Q ss_pred CC
Q 035547 411 IP 412 (482)
Q Consensus 411 ~~ 412 (482)
..
T Consensus 376 ~~ 377 (390)
T 3o6n_A 376 KI 377 (390)
T ss_dssp CT
T ss_pred cc
Confidence 44
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.8e-36 Score=303.62 Aligned_cols=336 Identities=16% Similarity=0.137 Sum_probs=285.1
Q ss_pred ecCCcCCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCcccccCCCC
Q 035547 6 GTLPDSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLNEIHLLSNN 84 (482)
Q Consensus 6 g~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l~~l~~n 84 (482)
..+|..+. +++++|+|++|.++++.+..|.++++|++|+|++|.++++.+.. ..+++|++|+|++|+++.++
T Consensus 24 ~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~----- 96 (477)
T 2id5_A 24 VAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP----- 96 (477)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCC-----
T ss_pred CcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccC-----
Confidence 35777664 58999999999999988899999999999999999999987776 89999999999999988663
Q ss_pred cccccCCCCCcCCccccEEEccCCCCCCCC-C-CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCC
Q 035547 85 QFENQFPEISNMSSSFSKLRLASSKPWVIP-I-LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQ 162 (482)
Q Consensus 85 ~l~~~~p~~~~~~~~L~~L~l~~n~l~~l~-~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~ 162 (482)
+..+..+++|+.|++++|.+..++ . |.++++|++|++++|.+++..+..|..+.. |+.|++++|+++.++
T Consensus 97 ------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 97 ------LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS--LEQLTLEKCNLTSIP 168 (477)
T ss_dssp ------TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTT--CCEEEEESCCCSSCC
T ss_pred ------cccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCC--CCEEECCCCcCcccC
Confidence 334444499999999999999664 4 999999999999999999888889999988 999999999999988
Q ss_pred CCCC-CCCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhh-hccc
Q 035547 163 EPYH-ISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLK-SLAN 240 (482)
Q Consensus 163 ~~~~-~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~ 240 (482)
...+ .+++|+.|++++|.+.+..+..|..+++|+.|++++|...+.+|....... +|++|++++|.++.+|. .+..
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~ 246 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL--NLTSLSITHCNLTAVPYLAVRH 246 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC--CCSEEEEESSCCCSCCHHHHTT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCc--cccEEECcCCcccccCHHHhcC
Confidence 6655 889999999999999998888999999999999999988878887766655 99999999999999984 7889
Q ss_pred CCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHH
Q 035547 241 CNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQ 320 (482)
Q Consensus 241 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 320 (482)
+++|+.|++++|.+++..+..|..+++|++|++++|.+++.. +..+..+++|++|+|++|.+++..+..
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~--------- 315 (477)
T 2id5_A 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE--PYAFRGLNYLRVLNVSGNQLTTLEESV--------- 315 (477)
T ss_dssp CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEEC--TTTBTTCTTCCEEECCSSCCSCCCGGG---------
T ss_pred ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceEC--HHHhcCcccCCEEECCCCcCceeCHhH---------
Confidence 999999999999999988888999999999999999999887 678999999999999999999766543
Q ss_pred hhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCccccccccc
Q 035547 321 LKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFG 370 (482)
Q Consensus 321 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 370 (482)
+..+++|++|++++|.+....+..+ -...+..+.+.++...-..|..+.
T Consensus 316 ~~~l~~L~~L~l~~N~l~c~c~~~~-~~~~~~~~~~~~~~~~C~~p~~~~ 364 (477)
T 2id5_A 316 FHSVGNLETLILDSNPLACDCRLLW-VFRRRWRLNFNRQQPTCATPEFVQ 364 (477)
T ss_dssp BSCGGGCCEEECCSSCEECSGGGHH-HHTTTTSSCCTTCCCBEEESGGGT
T ss_pred cCCCcccCEEEccCCCccCccchHh-HHhhhhccccCccCceeCCchHHc
Confidence 3678999999999999985433222 123344455555555433444433
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.6e-35 Score=283.90 Aligned_cols=305 Identities=21% Similarity=0.282 Sum_probs=211.8
Q ss_pred CCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccccCCCCcccccCCCC
Q 035547 14 TLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEI 93 (482)
Q Consensus 14 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~ 93 (482)
.+++|++|++++|.+... + .+..+++|++|++++|.+++.++ ...+++|++|++++|.++.++ .
T Consensus 42 ~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~------------~- 105 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS------------A- 105 (347)
T ss_dssp HHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG------------G-
T ss_pred hcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch------------H-
Confidence 456666666666666552 2 35666666666666666665433 455666666666666655431 1
Q ss_pred CcCCccccEEEccCCCCCCCCCCCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccE
Q 035547 94 SNMSSSFSKLRLASSKPWVIPILKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYS 173 (482)
Q Consensus 94 ~~~~~~L~~L~l~~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~ 173 (482)
+...++|++|++++|.+..++.+..+++|++|++++|.....+ ..+..++. |++|++++|.++..
T Consensus 106 ~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~--L~~L~l~~~~~~~~------------ 170 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDL-SPLSNMTG--LNYLTVTESKVKDV------------ 170 (347)
T ss_dssp GTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCC-GGGTTCTT--CCEEECCSSCCCCC------------
T ss_pred HcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccc-cchhhCCC--CcEEEecCCCcCCc------------
Confidence 1111555555555555555555555555555555555443222 22444444 55555555555443
Q ss_pred EEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcc
Q 035547 174 FSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNH 253 (482)
Q Consensus 174 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~ 253 (482)
.+ +..+++|+.|++++|.+. .++. +.... +|+.+++++|.+..++. +..+++|++|++++|.
T Consensus 171 -----------~~--~~~l~~L~~L~l~~n~l~-~~~~-~~~l~--~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 171 -----------TP--IANLTDLYSLSLNYNQIE-DISP-LASLT--SLHYFTAYVNQITDITP-VANMTRLNSLKIGNNK 232 (347)
T ss_dssp -----------GG--GGGCTTCSEEECTTSCCC-CCGG-GGGCT--TCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred -----------hh--hccCCCCCEEEccCCccc-cccc-ccCCC--ccceeecccCCCCCCch-hhcCCcCCEEEccCCc
Confidence 22 678888888888888887 3433 45555 88889998888877765 7788899999999998
Q ss_pred cCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCC
Q 035547 254 ISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCS 333 (482)
Q Consensus 254 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 333 (482)
+++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+++. + . +..+++|++|+++
T Consensus 233 l~~~~~--~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~l~~n~l~~~-~-~---------~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 233 ITDLSP--LANLSQLTWLEIGTNQISDI----NAVKDLTKLKMLNVGSNQISDI-S-V---------LNNLSQLNSLFLN 295 (347)
T ss_dssp CCCCGG--GTTCTTCCEEECCSSCCCCC----GGGTTCTTCCEEECCSSCCCCC-G-G---------GGGCTTCSEEECC
T ss_pred cCCCcc--hhcCCCCCEEECCCCccCCC----hhHhcCCCcCEEEccCCccCCC-h-h---------hcCCCCCCEEECc
Confidence 887544 78888999999999988764 3577888999999999988864 2 1 3678899999999
Q ss_pred CCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCcc
Q 035547 334 SNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLM 386 (482)
Q Consensus 334 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 386 (482)
+|.+++..+..++.+++|++|++++|++++..| +..+++|+.|++++|+++
T Consensus 296 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 296 NNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 999998889999999999999999999996555 888999999999999875
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.1e-35 Score=307.22 Aligned_cols=333 Identities=16% Similarity=0.169 Sum_probs=238.0
Q ss_pred CCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCcccccCCCCcccccCCC
Q 035547 14 TLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPE 92 (482)
Q Consensus 14 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~ 92 (482)
.+++++.|++++|.+..+.+..|..+++|++|+|++|.+.++++.. ..+++|++|+|++|.++.++ |.
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----------~~ 117 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP-----------PH 117 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-----------TT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCC-----------HH
Confidence 3577888888888888866667788888888888888888877755 78888888888888777553 44
Q ss_pred CCcCCccccEEEccCCCCCCCCC--CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCC
Q 035547 93 ISNMSSSFSKLRLASSKPWVIPI--LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGR 170 (482)
Q Consensus 93 ~~~~~~~L~~L~l~~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~ 170 (482)
.+..+++|+.|++++|.+..+|. |+++++|++|++++|.+++..|..|..++. |++|++++|.++.++
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~--L~~L~L~~N~l~~~~-------- 187 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS--LQNLQLSSNRLTHVD-------- 187 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT--CCEEECTTSCCSBCC--------
T ss_pred HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCc--CcEEECcCCCCCCcC--------
Confidence 44444778888888888877776 677888888888888887777777777776 888888887777642
Q ss_pred ccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCC
Q 035547 171 TYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLR 250 (482)
Q Consensus 171 l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls 250 (482)
+..+++|+.|++++|.+.+. + ... +|+.|++++|.++.++..+ .++|+.|+++
T Consensus 188 ------------------~~~l~~L~~L~l~~n~l~~l-~----~~~--~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~ 240 (597)
T 3oja_B 188 ------------------LSLIPSLFHANVSYNLLSTL-A----IPI--AVEELDASHNSINVVRGPV--NVELTILKLQ 240 (597)
T ss_dssp ------------------GGGCTTCSEEECCSSCCSEE-E----CCT--TCSEEECCSSCCCEEECSC--CSCCCEEECC
T ss_pred ------------------hhhhhhhhhhhcccCccccc-c----CCc--hhheeeccCCccccccccc--CCCCCEEECC
Confidence 34456666677766666531 1 112 6677777777776665443 2567777777
Q ss_pred CcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEE
Q 035547 251 NNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSI 330 (482)
Q Consensus 251 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L 330 (482)
+|.+++ +..+..+++|++|++++|.+.+.. +..++.+++|++|+|++|.+++..+. ...+++|+.|
T Consensus 241 ~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~l~~~----------~~~l~~L~~L 306 (597)
T 3oja_B 241 HNNLTD--TAWLLNYPGLVEVDLSYNELEKIM--YHPFVKMQRLERLYISNNRLVALNLY----------GQPIPTLKVL 306 (597)
T ss_dssp SSCCCC--CGGGGGCTTCSEEECCSSCCCEEE--SGGGTTCSSCCEEECTTSCCCEEECS----------SSCCTTCCEE
T ss_pred CCCCCC--ChhhccCCCCCEEECCCCccCCCC--HHHhcCccCCCEEECCCCCCCCCCcc----------cccCCCCcEE
Confidence 777765 355667777777777777777665 45667777777777777777654221 1346778888
Q ss_pred eCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCccccCCCCcccCcCCCCcccCCCCCC
Q 035547 331 DCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQSFLPTSYEGNKGLY 410 (482)
Q Consensus 331 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~~ 410 (482)
+|++|.++ .+|..+..+++|+.|+|++|.+++ +| +..+++|+.|++++|++.+.... ..+..+....+.+++..|
T Consensus 307 ~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C 381 (597)
T 3oja_B 307 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHC 381 (597)
T ss_dssp ECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCC
T ss_pred ECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccC
Confidence 88888887 567778899999999999999984 43 67788999999999999876432 234445555667777777
Q ss_pred CCC
Q 035547 411 IPP 413 (482)
Q Consensus 411 ~~~ 413 (482)
+.+
T Consensus 382 ~~~ 384 (597)
T 3oja_B 382 KID 384 (597)
T ss_dssp CTT
T ss_pred Ccc
Confidence 653
No 35
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=6.9e-35 Score=292.38 Aligned_cols=339 Identities=22% Similarity=0.240 Sum_probs=255.6
Q ss_pred CCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCC-CCCCC-------------CCEEECcCCCCcccc
Q 035547 14 TLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRN-------------LNYLDLSSNNLNEIH 79 (482)
Q Consensus 14 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~-------------L~~L~Ls~N~i~~l~ 79 (482)
..+.|++|++++|.+ +.+|.+++++++|++|++++|.+.+..|.. +.+.+ +++|++++|+++.++
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 468999999999999 668999999999999999999998777766 77776 499999999887543
Q ss_pred ---------cCCCCcccccCCCCCcCCccccEEEccCCCCCCCCCCCCCCCCCEEEcccCcccccCChhhhhcCCCCccE
Q 035547 80 ---------LLSNNQFENQFPEISNMSSSFSKLRLASSKPWVIPILKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYF 150 (482)
Q Consensus 80 ---------~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~ 150 (482)
+++.|.+.+ +|+.. ++|+.|++++|.+..+|.+. ++|++|++++|++++ +| ++..++. |++
T Consensus 88 ~~~~~L~~L~l~~n~l~~-lp~~~---~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~-lp-~~~~l~~--L~~ 157 (454)
T 1jl5_A 88 ELPPHLESLVASCNSLTE-LPELP---QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEK-LP-ELQNSSF--LKI 157 (454)
T ss_dssp SCCTTCSEEECCSSCCSS-CCCCC---TTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSS-CC-CCTTCTT--CCE
T ss_pred CCcCCCCEEEccCCcCCc-ccccc---CCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCC-Cc-ccCCCCC--CCE
Confidence 677888877 56532 78999999999988887632 689999999999985 77 5888888 999
Q ss_pred EeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCC
Q 035547 151 LNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNN 230 (482)
Q Consensus 151 L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~ 230 (482)
|++++|+++.++.. ..+++.|++++|.+.+ +| .+..+++|+.|++++|++.+ +|... . +|++|++++|.
T Consensus 158 L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~--~L~~L~l~~n~ 226 (454)
T 1jl5_A 158 IDVDNNSLKKLPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---L--SLESIVAGNNI 226 (454)
T ss_dssp EECCSSCCSCCCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---T--TCCEEECCSSC
T ss_pred EECCCCcCcccCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---C--cccEEECcCCc
Confidence 99999999986543 3589999999999987 45 58899999999999999984 55432 2 89999999999
Q ss_pred CCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCH
Q 035547 231 LGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQ 310 (482)
Q Consensus 231 l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 310 (482)
++.+| .+..+++|++|++++|.+++ .|. .+++|++|++++|.+++.. . .+++|++|++++|.+++...
T Consensus 227 l~~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l~---~---~~~~L~~L~ls~N~l~~l~~- 294 (454)
T 1jl5_A 227 LEELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDLP---E---LPQSLTFLDVSENIFSGLSE- 294 (454)
T ss_dssp CSSCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCCC---C---CCTTCCEEECCSSCCSEESC-
T ss_pred CCccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccccC---c---ccCcCCEEECcCCccCcccC-
Confidence 99888 48899999999999999987 443 2478999999999998753 2 24889999999999986321
Q ss_pred HHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcC-CCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCccccC
Q 035547 311 KWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRF-KSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKI 389 (482)
Q Consensus 311 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 389 (482)
.+++|++|++++|.+++.. .+ ++|+.|++++|++++ +|.. +++|+.|++++|+++. +
T Consensus 295 ------------~~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-l 352 (454)
T 1jl5_A 295 ------------LPPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-V 352 (454)
T ss_dssp ------------CCTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-C
T ss_pred ------------cCCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-c
Confidence 3478999999999998632 23 589999999999995 6654 5789999999999984 6
Q ss_pred CCCcccCcCCCCcccCCCCCC
Q 035547 390 PTSTQLQSFLPTSYEGNKGLY 410 (482)
Q Consensus 390 p~~~~~~~~~~~~~~~n~~~~ 410 (482)
|. .+..+..+++.+|...+
T Consensus 353 p~--~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 353 PE--LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CC--CCTTCCEEECCSSCCSS
T ss_pred cc--hhhhccEEECCCCCCCc
Confidence 66 46778888888887765
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.3e-34 Score=288.83 Aligned_cols=343 Identities=15% Similarity=0.131 Sum_probs=260.4
Q ss_pred ceecCCcCCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccccCCC
Q 035547 4 FLGTLPDSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIHLLSN 83 (482)
Q Consensus 4 ~~g~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~ 83 (482)
+.+..+.+++.+++|++|++++|.+++. | .++.+++|++|++++|.+++++ ...+++|++|++++|+++.++
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~---- 101 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD---- 101 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC----
T ss_pred cCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee----
Confidence 3445556788899999999999999984 5 7999999999999999999863 688999999999999888551
Q ss_pred CcccccCCCCCcCCccccEEEccCCCCCCCCCCCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCC-cccCCC
Q 035547 84 NQFENQFPEISNMSSSFSKLRLASSKPWVIPILKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQN-LLVSLQ 162 (482)
Q Consensus 84 n~l~~~~p~~~~~~~~L~~L~l~~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n-~i~~~~ 162 (482)
+...++|+.|++++|.++.+| ++.+++|++|++++|++++ ++ +..++. |++|++++| .+..+
T Consensus 102 ----------~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~-l~--l~~l~~--L~~L~l~~n~~~~~~- 164 (457)
T 3bz5_A 102 ----------VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTE-ID--VSHNTQ--LTELDCHLNKKITKL- 164 (457)
T ss_dssp ----------CTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSC-CC--CTTCTT--CCEEECTTCSCCCCC-
T ss_pred ----------cCCCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCccce-ec--cccCCc--CCEEECCCCCccccc-
Confidence 112288999999999999887 8899999999999999985 33 666777 999999999 45554
Q ss_pred CCCCCCCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCC
Q 035547 163 EPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCN 242 (482)
Q Consensus 163 ~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~ 242 (482)
.+..+++|+.|++++|.+++. | +..+++|+.|++++|++.+. + +.... +|++|++++|.++.+| +..++
T Consensus 165 -~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~-~--l~~l~--~L~~L~Ls~N~l~~ip--~~~l~ 233 (457)
T 3bz5_A 165 -DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL-D--LNQNI--QLTFLDCSSNKLTEID--VTPLT 233 (457)
T ss_dssp -CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCT--TCSEEECCSSCCSCCC--CTTCT
T ss_pred -ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee-c--cccCC--CCCEEECcCCcccccC--ccccC
Confidence 344788999999999999884 4 77889999999999999853 3 44444 9999999999998887 78889
Q ss_pred CCCEEeCCCcccCCCcChhhhcCC-------CCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHH
Q 035547 243 MLQVLDLRNNHISDNFPCWLRNAF-------SLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLT 315 (482)
Q Consensus 243 ~L~~L~Ls~N~l~~~~~~~~~~l~-------~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 315 (482)
+|+.|++++|.+++..+..+..+. +|+.|++++|.+.+..+ ++.+++|+.|++++|...+.+|......
T Consensus 234 ~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~~~~~L 309 (457)
T 3bz5_A 234 QLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDCQAAGI 309 (457)
T ss_dssp TCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEECTTCCC
T ss_pred CCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceeccCCCcc
Confidence 999999999999886544443332 34444455554444332 4678899999999998666554211000
Q ss_pred HHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCccccccccc-------------CCCCCCEEeCCC
Q 035547 316 MMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFG-------------NLKQIESLDLLM 382 (482)
Q Consensus 316 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------------~l~~L~~L~l~~ 382 (482)
.. -.+...++|++|++++|++++. + ++.+++|+.|++++|++++ ++ .+. .+..|..+++++
T Consensus 310 ~~-L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-l~-~L~~L~l~~n~l~g~~~~~~l~~l~l~~ 383 (457)
T 3bz5_A 310 TE-LDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD-FS-SVGKIPALNNNFEAEGQTITMPKETLTN 383 (457)
T ss_dssp SC-CCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-CT-TGGGSSGGGTSEEEEEEEEECCCBCCBT
T ss_pred eE-echhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-cc-ccccccccCCcEEecceeeecCcccccc
Confidence 00 0124567889999999999974 3 7888999999999999885 22 111 224567789999
Q ss_pred CCccccCCCC
Q 035547 383 NNLMGKIPTS 392 (482)
Q Consensus 383 N~l~~~~p~~ 392 (482)
|+++|.+|..
T Consensus 384 N~l~g~ip~~ 393 (457)
T 3bz5_A 384 NSLTIAVSPD 393 (457)
T ss_dssp TBEEEECCTT
T ss_pred CcEEEEcChh
Confidence 9999988874
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.2e-34 Score=287.78 Aligned_cols=312 Identities=16% Similarity=0.168 Sum_probs=258.2
Q ss_pred CCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccccCCCCcccccCCCCCcCCccccEEE
Q 035547 25 SYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEISNMSSSFSKLR 104 (482)
Q Consensus 25 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~~~~~~L~~L~ 104 (482)
........+.+++++++|++|++++|.+++. |+...+++|++|++++|+++.++ +...++|+.|+
T Consensus 27 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~--------------~~~l~~L~~L~ 91 (457)
T 3bz5_A 27 AFEMQATDTISEEQLATLTSLDCHNSSITDM-TGIEKLTGLTKLICTSNNITTLD--------------LSQNTNLTYLA 91 (457)
T ss_dssp HTTCCTTSEEEHHHHTTCCEEECCSSCCCCC-TTGGGCTTCSEEECCSSCCSCCC--------------CTTCTTCSEEE
T ss_pred hcCcCcccccChhHcCCCCEEEccCCCcccC-hhhcccCCCCEEEccCCcCCeEc--------------cccCCCCCEEE
Confidence 3445555667899999999999999999986 45688999999999999988551 12228999999
Q ss_pred ccCCCCCCCCCCCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCccccc
Q 035547 105 LASSKPWVIPILKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGF 184 (482)
Q Consensus 105 l~~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~ 184 (482)
+++|.++.++ ++++++|++|++++|++++ +| +..++. |++|++++|+++.++ +..+++|+.|++++|...+.
T Consensus 92 Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~-l~--~~~l~~--L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~ 163 (457)
T 3bz5_A 92 CDSNKLTNLD-VTPLTKLTYLNCDTNKLTK-LD--VSQNPL--LTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITK 163 (457)
T ss_dssp CCSSCCSCCC-CTTCTTCCEEECCSSCCSC-CC--CTTCTT--CCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCC
T ss_pred CcCCCCceee-cCCCCcCCEEECCCCcCCe-ec--CCCCCc--CCEEECCCCccceec--cccCCcCCEEECCCCCcccc
Confidence 9999999887 9999999999999999985 44 777777 999999999999973 55889999999999976665
Q ss_pred ChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhc
Q 035547 185 IPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRN 264 (482)
Q Consensus 185 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 264 (482)
+ .+..+++|+.|++++|++++ +| +.... +|++|++++|.++.++ +..+++|++|++++|++++ .| +..
T Consensus 164 ~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~--~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~ 231 (457)
T 3bz5_A 164 L--DVTPQTQLTTLDCSFNKITE-LD--VSQNK--LLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTP 231 (457)
T ss_dssp C--CCTTCTTCCEEECCSSCCCC-CC--CTTCT--TCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTT
T ss_pred c--ccccCCcCCEEECCCCccce-ec--cccCC--CCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccc
Confidence 5 47889999999999999985 55 54555 9999999999998884 8889999999999999998 45 789
Q ss_pred CCCCcEEEcccCccccccCCCCCCCCCC-------CCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcc
Q 035547 265 AFSLQVLVFRSNNFSERISCPRNNVSWP-------LLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNF 337 (482)
Q Consensus 265 l~~L~~L~L~~N~i~~~~~~~~~~~~l~-------~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 337 (482)
+++|++|++++|.+++.. ...+..+. +|+.|++++|.+.+.+|. ..+++|+.|++++|..
T Consensus 232 l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~-----------~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 232 LTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA-----------EGCRKIKELDVTHNTQ 298 (457)
T ss_dssp CTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC-----------TTCTTCCCCCCTTCTT
T ss_pred cCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCcccc-----------cccccCCEEECCCCcc
Confidence 999999999999999864 33333333 455566666666555552 4679999999999987
Q ss_pred cccChH--------hhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCccc
Q 035547 338 EGPMPE--------EMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMG 387 (482)
Q Consensus 338 ~~~~~~--------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 387 (482)
.+.+|. .++++++|++|++++|++++ ++ +..+++|+.|++++|++++
T Consensus 299 l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 299 LYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB
T ss_pred cceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC
Confidence 665553 25567899999999999996 43 8999999999999999987
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=5.3e-33 Score=267.97 Aligned_cols=266 Identities=19% Similarity=0.141 Sum_probs=196.1
Q ss_pred cccEEEccCCCCCCCCC--CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEc
Q 035547 99 SFSKLRLASSKPWVIPI--LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFST 176 (482)
Q Consensus 99 ~L~~L~l~~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l 176 (482)
.++.|++++|.++.++. |.++++|++|++++|++++..|..|..++. |++|++++|+++.++..++ ++|+.|++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~Ls~n~l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK--LERLYLSKNQLKELPEKMP--KTLQELRV 128 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTT--CCEEECCSSCCSBCCSSCC--TTCCEEEC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCC--CCEEECCCCcCCccChhhc--ccccEEEC
Confidence 34444444444444433 666777777777777777666666766666 7777777777776655444 57777777
Q ss_pred cCCcccccChhhhhcCCCCCEEeCCCCcccc--cCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCccc
Q 035547 177 INKSLIGFIPEYICKATYFQVLDLSNNNLSG--SIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHI 254 (482)
Q Consensus 177 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l 254 (482)
++|.+.+..+..+..+++|+.|++++|.+.. ..+..+.... +|++|++++|.++.+|..+. ++|++|++++|.+
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~--~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l 204 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK--KLSYIRIADTNITTIPQGLP--PSLTELHLDGNKI 204 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT--TCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC--CcCEEECCCCccccCCcccc--ccCCEEECCCCcC
Confidence 7777777777788888889999998888853 5566666666 88889998888888876654 7888999999888
Q ss_pred CCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCC
Q 035547 255 SDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSS 334 (482)
Q Consensus 255 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 334 (482)
++..+..+..+++|++|++++|.+++.. +..+..+++|++|++++|.++ .+|..+ ..+++|++|++++
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~-~lp~~l---------~~l~~L~~L~l~~ 272 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAVD--NGSLANTPHLRELHLNNNKLV-KVPGGL---------ADHKYIQVVYLHN 272 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEEC--TTTGGGSTTCCEEECCSSCCS-SCCTTT---------TTCSSCCEEECCS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCceeC--hhhccCCCCCCEEECCCCcCc-cCChhh---------ccCCCcCEEECCC
Confidence 8877888888888999999998888765 456788888888888888887 444332 5678888888888
Q ss_pred CcccccChHhhhc------CCCCCeeeccCCcCcc--cccccccCCCCCCEEeCCCCC
Q 035547 335 NNFEGPMPEEMGR------FKSLYAPNMSHNALKG--SIPSSFGNLKQIESLDLLMNN 384 (482)
Q Consensus 335 n~l~~~~~~~~~~------l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~l~~N~ 384 (482)
|++++..+..|.. .+.++.|++++|.+.. ..|..|..+.+++.+++++|+
T Consensus 273 N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 273 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 8888777666643 3778889999998863 556788888899999998884
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2e-32 Score=265.96 Aligned_cols=307 Identities=19% Similarity=0.260 Sum_probs=242.8
Q ss_pred hccCCCCCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccccCCCCcccccCCCCCcCCccccEEEccCCCCCCCC
Q 035547 35 SMANLAQLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEISNMSSSFSKLRLASSKPWVIP 114 (482)
Q Consensus 35 ~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~l~ 114 (482)
.+..+++|++|++++|.+... +....+++|++|++++|+++.++ . +...++|+.|++++|.+..++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~-~~~~~~~~L~~L~l~~n~i~~~~------------~-~~~l~~L~~L~L~~n~i~~~~ 104 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASI-QGIEYLTNLEYLNLNGNQITDIS------------P-LSNLVKLTNLYIGTNKITDIS 104 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCG------------G-GTTCTTCCEEECCSSCCCCCG
T ss_pred cchhcccccEEEEeCCccccc-hhhhhcCCccEEEccCCccccch------------h-hhcCCcCCEEEccCCcccCch
Confidence 456788899999999888754 44677888888888888887653 1 112267777777777777766
Q ss_pred CCCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCC
Q 035547 115 ILKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATY 194 (482)
Q Consensus 115 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~ 194 (482)
.+.++++|++|++++|.+++ ++. +..++. |++|++++|.... .+ ..+..+++
T Consensus 105 ~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~--L~~L~l~~n~~~~-----------------------~~-~~~~~l~~ 156 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDNISD-ISP-LANLTK--MYSLNLGANHNLS-----------------------DL-SPLSNMTG 156 (347)
T ss_dssp GGTTCTTCSEEECTTSCCCC-CGG-GTTCTT--CCEEECTTCTTCC-----------------------CC-GGGTTCTT
T ss_pred HHcCCCcCCEEECcCCcccC-chh-hccCCc--eeEEECCCCCCcc-----------------------cc-cchhhCCC
Confidence 67777777777777777763 332 555555 6666666664332 22 33788999
Q ss_pred CCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcc
Q 035547 195 FQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFR 274 (482)
Q Consensus 195 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 274 (482)
|++|++++|.+.+ ++. +.... +|++|++++|.++.++. +..+++|+.|++++|.+++..+ +..+++|++|+++
T Consensus 157 L~~L~l~~~~~~~-~~~-~~~l~--~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~ 229 (347)
T 4fmz_A 157 LNYLTVTESKVKD-VTP-IANLT--DLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIG 229 (347)
T ss_dssp CCEEECCSSCCCC-CGG-GGGCT--TCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECC
T ss_pred CcEEEecCCCcCC-chh-hccCC--CCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEcc
Confidence 9999999999984 333 55555 99999999999998876 8899999999999999988544 8899999999999
Q ss_pred cCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCee
Q 035547 275 SNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAP 354 (482)
Q Consensus 275 ~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 354 (482)
+|.+++..+ +..+++|++|++++|.+++. + . +..+++|++|++++|.+++. ..+..+++|++|
T Consensus 230 ~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~-~-~---------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L 292 (347)
T 4fmz_A 230 NNKITDLSP----LANLSQLTWLEIGTNQISDI-N-A---------VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSL 292 (347)
T ss_dssp SSCCCCCGG----GTTCTTCCEEECCSSCCCCC-G-G---------GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred CCccCCCcc----hhcCCCCCEEECCCCccCCC-h-h---------HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEE
Confidence 999987642 78999999999999999864 2 1 36789999999999999964 468899999999
Q ss_pred eccCCcCcccccccccCCCCCCEEeCCCCCccccCCCCcccCcCCCCcccCCCC
Q 035547 355 NMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQSFLPTSYEGNKG 408 (482)
Q Consensus 355 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~ 408 (482)
++++|++++..|..+..+++|+.|++++|++++..| ...+..+..+++.+|+.
T Consensus 293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp ECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred ECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence 999999998888999999999999999999997766 55677777888888764
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.7e-33 Score=274.73 Aligned_cols=309 Identities=20% Similarity=0.168 Sum_probs=237.9
Q ss_pred CCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCcccccCCCCcccccCCCCCcCCccccEEEccCCCCCCCCCCC
Q 035547 39 LAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEISNMSSSFSKLRLASSKPWVIPILK 117 (482)
Q Consensus 39 l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~l~~~~ 117 (482)
+.+++.|++++|.++.+++.. ..+++|++|++++|.++.++ +.. |.
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~-----------~~~----------------------~~ 90 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID-----------TYA----------------------FA 90 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEEC-----------TTT----------------------TT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccC-----------hhh----------------------cc
Confidence 467777777777776665554 56677777777777665442 111 55
Q ss_pred CCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCC-CCCCccEEEccCCcccccChhhhhcCCCCC
Q 035547 118 NQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYH-ISGRTYSFSTINKSLIGFIPEYICKATYFQ 196 (482)
Q Consensus 118 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~-~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~ 196 (482)
++++|++|++++|.+++..|..+..++. |++|++++|+++.++..++ .+++|+.|++++|.+.+..+..+..+++|+
T Consensus 91 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 168 (390)
T 3o6n_A 91 YAHTIQKLYMGFNAIRYLPPHVFQNVPL--LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168 (390)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTT--CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCC
T ss_pred CCCCcCEEECCCCCCCcCCHHHhcCCCC--CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCC
Confidence 6666666666666666555555666665 6666666666666666554 566677777777777666778899999999
Q ss_pred EEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccC
Q 035547 197 VLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSN 276 (482)
Q Consensus 197 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 276 (482)
.|++++|++.+. + +...+ +|+++++++|.++.++ ..++|++|++++|.+... |. ...++|++|++++|
T Consensus 169 ~L~l~~n~l~~~-~--~~~l~--~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n 236 (390)
T 3o6n_A 169 NLQLSSNRLTHV-D--LSLIP--SLFHANVSYNLLSTLA----IPIAVEELDASHNSINVV-RG--PVNVELTILKLQHN 236 (390)
T ss_dssp EEECCSSCCSBC-C--GGGCT--TCSEEECCSSCCSEEE----CCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSS
T ss_pred EEECCCCcCCcc-c--ccccc--ccceeecccccccccC----CCCcceEEECCCCeeeec-cc--cccccccEEECCCC
Confidence 999999999843 3 33344 9999999999997654 456899999999999875 33 23579999999999
Q ss_pred ccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeec
Q 035547 277 NFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNM 356 (482)
Q Consensus 277 ~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 356 (482)
.+++. ..+..+++|++|++++|.+++..|..+ ..+++|++|++++|++++ +|..+..+++|++|+|
T Consensus 237 ~l~~~----~~l~~l~~L~~L~Ls~n~l~~~~~~~~---------~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L 302 (390)
T 3o6n_A 237 NLTDT----AWLLNYPGLVEVDLSYNELEKIMYHPF---------VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDL 302 (390)
T ss_dssp CCCCC----GGGGGCTTCSEEECCSSCCCEEESGGG---------TTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEEC
T ss_pred CCccc----HHHcCCCCccEEECCCCcCCCcChhHc---------cccccCCEEECCCCcCcc-cCcccCCCCCCCEEEC
Confidence 99864 467889999999999999998877554 678999999999999996 4666678999999999
Q ss_pred cCCcCcccccccccCCCCCCEEeCCCCCccccCCCCcccCcCCCCcccCCCCCCC
Q 035547 357 SHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQSFLPTSYEGNKGLYI 411 (482)
Q Consensus 357 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~~~ 411 (482)
++|+++ .+|..+..+++|+.|++++|+++.. | ...+..+..+++.+|++.|.
T Consensus 303 ~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 303 SHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHH
T ss_pred CCCcce-ecCccccccCcCCEEECCCCcccee-C-chhhccCCEEEcCCCCccch
Confidence 999999 6777888999999999999999865 3 34567788889999998873
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=3.6e-32 Score=262.19 Aligned_cols=267 Identities=18% Similarity=0.143 Sum_probs=149.6
Q ss_pred CCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCcccccCCCCcccccCCCCC
Q 035547 16 ENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEIS 94 (482)
Q Consensus 16 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~ 94 (482)
+++++|++++|.++++.+..|+++++|++|++++|.++++.+.. ..+++|++|++++|+++.++ ...
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~------------~~~ 119 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP------------EKM 119 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCC------------SSC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccC------------hhh
Confidence 45666666666666655556666666666666666666654544 56666666666666665442 111
Q ss_pred cCCccccEEEccCCCCCCCCC--CCCCCCCCEEEcccCcccc--cCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCC
Q 035547 95 NMSSSFSKLRLASSKPWVIPI--LKNQSQLSFFYISNNQISG--EIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGR 170 (482)
Q Consensus 95 ~~~~~L~~L~l~~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~ 170 (482)
.++|++|++++|.+..++. +.++++|++|++++|.++. ..+..+..++. |++|++++|.++.++..++ ++
T Consensus 120 --~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~--L~~L~l~~n~l~~l~~~~~--~~ 193 (330)
T 1xku_A 120 --PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK--LSYIRIADTNITTIPQGLP--PS 193 (330)
T ss_dssp --CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT--CCEEECCSSCCCSCCSSCC--TT
T ss_pred --cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC--cCEEECCCCccccCCcccc--cc
Confidence 0456666666666665554 6666666666666666642 44555555555 6666666666666554333 55
Q ss_pred ccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCC
Q 035547 171 TYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLR 250 (482)
Q Consensus 171 l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls 250 (482)
|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+.... +|++|++++|.++.+|..+..+++|++|+++
T Consensus 194 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP--HLRELHLNNNKLVKVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST--TCCEEECCSSCCSSCCTTTTTCSSCCEEECC
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC--CCCEEECCCCcCccCChhhccCCCcCEEECC
Confidence 66666666666555555566666666666666666544444444444 5666666666665555555555566666666
Q ss_pred CcccCCCcChhhhcC------CCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCC
Q 035547 251 NNHISDNFPCWLRNA------FSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASN 302 (482)
Q Consensus 251 ~N~l~~~~~~~~~~l------~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n 302 (482)
+|.+++..+..|... ..++.+++++|.+......+..|..+.+++.++|++|
T Consensus 272 ~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 665555444444322 4455555555555432211334444455555555444
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=9.4e-34 Score=270.81 Aligned_cols=195 Identities=24% Similarity=0.369 Sum_probs=132.9
Q ss_pred cChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCC-chhhhcccCC-CCCEEeCCCcccCCCcChh
Q 035547 184 FIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLG-VVLKSLANCN-MLQVLDLRNNHISDNFPCW 261 (482)
Q Consensus 184 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~ 261 (482)
.+|..+..+++|++|++++|.+.+.+|..+.... +|++|++++|.++ .+|..+..++ +|++|++++|.+++..|..
T Consensus 116 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~ 193 (313)
T 1ogq_A 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP--NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193 (313)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT--TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC--CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH
Confidence 3456666677777777777777666666665555 6666666666664 5566666665 6666666666666556666
Q ss_pred hhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccC
Q 035547 262 LRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPM 341 (482)
Q Consensus 262 ~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 341 (482)
+..+. |++|++++|.+++.. +..+..+++|++|++++|. +++.+
T Consensus 194 ~~~l~-L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~---------------------------------l~~~~ 237 (313)
T 1ogq_A 194 FANLN-LAFVDLSRNMLEGDA--SVLFGSDKNTQKIHLAKNS---------------------------------LAFDL 237 (313)
T ss_dssp GGGCC-CSEEECCSSEEEECC--GGGCCTTSCCSEEECCSSE---------------------------------ECCBG
T ss_pred HhCCc-ccEEECcCCcccCcC--CHHHhcCCCCCEEECCCCc---------------------------------eeeec
Confidence 66654 666666666665543 3444555555555555554 44333
Q ss_pred hHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCccccCCCCcccCcCCCCcccCCCCCCCCCCCCCC
Q 035547 342 PEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQSFLPTSYEGNKGLYIPPLTNDI 418 (482)
Q Consensus 342 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~~~~~~~~~c 418 (482)
|. +..+++|++|+|++|++++.+|..+..+++|+.|++++|++++.+|....+..+..+.+.+|+.+|+.|.. .|
T Consensus 238 ~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 238 GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 43 56678888888888888878888888888888888888888888888777778888888888888887765 35
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=9.5e-33 Score=266.42 Aligned_cols=248 Identities=17% Similarity=0.121 Sum_probs=150.3
Q ss_pred CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCC
Q 035547 116 LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYF 195 (482)
Q Consensus 116 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L 195 (482)
|.++++|++|++++|++++..|..|..++. |++|++++|+++.++..++ ++|+.|++++|.+.+..+..+..+++|
T Consensus 74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L 149 (332)
T 2ft3_A 74 FKGLQHLYALVLVNNKISKIHEKAFSPLRK--LQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNM 149 (332)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGSTTCTT--CCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSC
T ss_pred hhCCCCCcEEECCCCccCccCHhHhhCcCC--CCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccC
Confidence 555555556666555555555555555555 5666666665555544433 555555666555555555556666666
Q ss_pred CEEeCCCCcccc--cCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEc
Q 035547 196 QVLDLSNNNLSG--SIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVF 273 (482)
Q Consensus 196 ~~L~l~~n~l~~--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 273 (482)
+.|++++|.+.. ..+..+... +|++|++++|.++.+|..+. ++|++|++++|.+++..+..+..+++|++|++
T Consensus 150 ~~L~l~~n~l~~~~~~~~~~~~l---~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L 224 (332)
T 2ft3_A 150 NCIEMGGNPLENSGFEPGAFDGL---KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGL 224 (332)
T ss_dssp CEEECCSCCCBGGGSCTTSSCSC---CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBC
T ss_pred CEEECCCCccccCCCCcccccCC---ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 666666666642 333333322 56666666666666665443 56666777777666665566666666777777
Q ss_pred ccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhc------
Q 035547 274 RSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGR------ 347 (482)
Q Consensus 274 ~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~------ 347 (482)
++|.+++.. +..+..+++|++|++++|.++ .+|..+ ..+++|++|++++|.+++..+..|..
T Consensus 225 ~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~-~lp~~l---------~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 292 (332)
T 2ft3_A 225 GHNQIRMIE--NGSLSFLPTLRELHLDNNKLS-RVPAGL---------PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK 292 (332)
T ss_dssp CSSCCCCCC--TTGGGGCTTCCEEECCSSCCC-BCCTTG---------GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSS
T ss_pred CCCcCCcCC--hhHhhCCCCCCEEECCCCcCe-ecChhh---------hcCccCCEEECCCCCCCccChhHccccccccc
Confidence 777666554 345666666777777666666 333322 45666667777777776655555544
Q ss_pred CCCCCeeeccCCcCc--ccccccccCCCCCCEEeCCCCC
Q 035547 348 FKSLYAPNMSHNALK--GSIPSSFGNLKQIESLDLLMNN 384 (482)
Q Consensus 348 l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~l~~N~ 384 (482)
.+.|+.|++++|.+. ...|..|..+++|+.+++++|+
T Consensus 293 ~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 356778888888776 4566777788888888887773
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.2e-32 Score=263.81 Aligned_cols=284 Identities=19% Similarity=0.201 Sum_probs=187.3
Q ss_pred CCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCcccccCCCCcccccCCCCCc
Q 035547 17 NLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEISN 95 (482)
Q Consensus 17 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~~ 95 (482)
+++.++++++.++. +|..+. ++|++|++++|.+.++++.. ..+++|++|++++|+++.+. |..+.
T Consensus 34 ~l~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----------~~~~~ 99 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH-----------EKAFS 99 (332)
T ss_dssp ETTEEECCSSCCSS-CCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-----------GGGST
T ss_pred cCCEEECCCCCccc-cCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC-----------HhHhh
Confidence 57777777777765 454442 57777777777777766654 77777777777777766442 33333
Q ss_pred CCccccEEEccCCCCCCCCC-CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccC--CCCCCC-CCCCc
Q 035547 96 MSSSFSKLRLASSKPWVIPI-LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVS--LQEPYH-ISGRT 171 (482)
Q Consensus 96 ~~~~L~~L~l~~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~--~~~~~~-~~~~l 171 (482)
..++|+.|++++|.+..+|. +. ++|++|++++|++++..+..|..++. |++|++++|.++. .....+ .+ ++
T Consensus 100 ~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~~~~~l-~L 174 (332)
T 2ft3_A 100 PLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRN--MNCIEMGGNPLENSGFEPGAFDGL-KL 174 (332)
T ss_dssp TCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSS--CCEEECCSCCCBGGGSCTTSSCSC-CC
T ss_pred CcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCcc--CCEEECCCCccccCCCCcccccCC-cc
Confidence 33777777777777777776 33 67777777777777555555666666 7777777777753 333333 33 77
Q ss_pred cEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhh-hcccCCCCCEEeCC
Q 035547 172 YSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLK-SLANCNMLQVLDLR 250 (482)
Q Consensus 172 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~Ls 250 (482)
+.|++++|.+.+ +|..+. ++|+.|++++|.+.+..+..+.... +|++|++++|.++.++. .+..+++|++|+++
T Consensus 175 ~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~--~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 249 (332)
T 2ft3_A 175 NYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYS--KLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249 (332)
T ss_dssp SCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCT--TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred CEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCC--CCCEEECCCCcCCcCChhHhhCCCCCCEEECC
Confidence 777777777765 333222 5777777777777755556666555 77777777777766654 67777778888888
Q ss_pred CcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCC------CCCCCEEecCCCCCc--ccCCHHHHHHHHHHHhh
Q 035547 251 NNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVS------WPLLKIVDLASNKFS--GRLSQKWLLTMMIIQLK 322 (482)
Q Consensus 251 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~------l~~L~~L~Ls~n~l~--~~~~~~~~~~~~~~~~~ 322 (482)
+|.++. +|..+..+++|++|++++|.+++.. ...+.. ...|+.|++++|.+. +..+..| .
T Consensus 250 ~N~l~~-lp~~l~~l~~L~~L~l~~N~l~~~~--~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~---------~ 317 (332)
T 2ft3_A 250 NNKLSR-VPAGLPDLKLLQVVYLHTNNITKVG--VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF---------R 317 (332)
T ss_dssp SSCCCB-CCTTGGGCTTCCEEECCSSCCCBCC--TTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGG---------T
T ss_pred CCcCee-cChhhhcCccCCEEECCCCCCCccC--hhHccccccccccccccceEeecCcccccccCcccc---------c
Confidence 877774 5666777777888888888777654 333433 356778888888776 3344322 5
Q ss_pred cCCcceEEeCCCCc
Q 035547 323 IPNIFTSIDCSSNN 336 (482)
Q Consensus 323 ~~~~L~~L~Ls~n~ 336 (482)
.+++|+.+++++|+
T Consensus 318 ~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 318 CVTDRLAIQFGNYK 331 (332)
T ss_dssp TBCCSTTEEC----
T ss_pred ccchhhhhhccccc
Confidence 67777788887764
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.5e-33 Score=287.63 Aligned_cols=309 Identities=20% Similarity=0.161 Sum_probs=239.5
Q ss_pred CCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCcccccCCCCcccccCCCCCcCCccccEEEccCCCCCCCCCCC
Q 035547 39 LAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEISNMSSSFSKLRLASSKPWVIPILK 117 (482)
Q Consensus 39 l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~l~~~~ 117 (482)
+.+++.|++++|.+..+++.. ..+++|++|+|++|.|+.++ |.. |.
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~-----------~~~----------------------~~ 96 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID-----------TYA----------------------FA 96 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEEC-----------TTT----------------------TT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCC-----------hHH----------------------hc
Confidence 466677777777766665554 55667777777766665442 111 66
Q ss_pred CCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCC-CCCCccEEEccCCcccccChhhhhcCCCCC
Q 035547 118 NQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYH-ISGRTYSFSTINKSLIGFIPEYICKATYFQ 196 (482)
Q Consensus 118 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~-~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~ 196 (482)
.+++|++|+|++|.+++..|..|..++. |++|++++|.++.+++.++ .+++|+.|++++|.+.+..|..+..+++|+
T Consensus 97 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 174 (597)
T 3oja_B 97 YAHTIQKLYMGFNAIRYLPPHVFQNVPL--LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174 (597)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTT--CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred CCCCCCEEECCCCcCCCCCHHHHcCCCC--CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCc
Confidence 6666777777777766655556666666 7777777777776666654 666777777777777777788899999999
Q ss_pred EEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccC
Q 035547 197 VLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSN 276 (482)
Q Consensus 197 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 276 (482)
.|++++|.+.+. + +...+ +|+.|++++|.++.++ ..++|+.|++++|.+....+.. .++|+.|++++|
T Consensus 175 ~L~L~~N~l~~~-~--~~~l~--~L~~L~l~~n~l~~l~----~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n 242 (597)
T 3oja_B 175 NLQLSSNRLTHV-D--LSLIP--SLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRGPV---NVELTILKLQHN 242 (597)
T ss_dssp EEECTTSCCSBC-C--GGGCT--TCSEEECCSSCCSEEE----CCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSS
T ss_pred EEECcCCCCCCc-C--hhhhh--hhhhhhcccCcccccc----CCchhheeeccCCccccccccc---CCCCCEEECCCC
Confidence 999999999853 3 33334 9999999999997653 4568999999999998744332 368999999999
Q ss_pred ccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeec
Q 035547 277 NFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNM 356 (482)
Q Consensus 277 ~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 356 (482)
.+++. ..+..+++|++|+|++|.+++..|..+ ..+++|+.|+|++|.+++ +|..+..+++|+.|+|
T Consensus 243 ~l~~~----~~l~~l~~L~~L~Ls~N~l~~~~~~~~---------~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L 308 (597)
T 3oja_B 243 NLTDT----AWLLNYPGLVEVDLSYNELEKIMYHPF---------VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDL 308 (597)
T ss_dssp CCCCC----GGGGGCTTCSEEECCSSCCCEEESGGG---------TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEEC
T ss_pred CCCCC----hhhccCCCCCEEECCCCccCCCCHHHh---------cCccCCCEEECCCCCCCC-CCcccccCCCCcEEEC
Confidence 99873 467899999999999999999888655 678999999999999997 4666788999999999
Q ss_pred cCCcCcccccccccCCCCCCEEeCCCCCccccCCCCcccCcCCCCcccCCCCCCC
Q 035547 357 SHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQSFLPTSYEGNKGLYI 411 (482)
Q Consensus 357 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~~~ 411 (482)
++|.++ .+|..+..+++|+.|++++|++++.. ...+..+..+++.+||+.|.
T Consensus 309 s~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 309 SHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCCh
Confidence 999999 78888899999999999999998653 33566778888999998773
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.2e-32 Score=261.29 Aligned_cols=247 Identities=23% Similarity=0.329 Sum_probs=193.3
Q ss_pred ccccEEEccCCCCC---CCCC-CCCCCCCCEEEccc-CcccccCChhhhhcCCCCccEEeCCCCccc-CCCCCCCCCCCc
Q 035547 98 SSFSKLRLASSKPW---VIPI-LKNQSQLSFFYISN-NQISGEIPNWIWEVGGVNLYFLNLSQNLLV-SLQEPYHISGRT 171 (482)
Q Consensus 98 ~~L~~L~l~~n~l~---~l~~-~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~-~~~~~~~~~~~l 171 (482)
.+++.|++++|.+. .+|. +.++++|++|++++ |.+.+.+|..+..++. |++|++++|+++ .++..+..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~--L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ--LHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTT--CSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCC--CCEEECcCCeeCCcCCHHHhCCCCC
Confidence 34666666666665 3565 77778888888884 7777777877777777 888888888877 344444477788
Q ss_pred cEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCC-chhhhcccCCCCCEEeCC
Q 035547 172 YSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLG-VVLKSLANCNMLQVLDLR 250 (482)
Q Consensus 172 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~Ls 250 (482)
+.|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+.... ++|++|++++|.++ .+|..+..++ |++|+++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS-KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC-TTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh-hcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 8888888888878899999999999999999999989998887653 28999999999996 7788888887 9999999
Q ss_pred CcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEE
Q 035547 251 NNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSI 330 (482)
Q Consensus 251 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L 330 (482)
+|.+++..|..|..+++|++|++++|.+++..+ .+..+++|++|++++|.++
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~l~~L~~L~Ls~N~l~------------------------- 257 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG---KVGLSKNLNGLDLRNNRIY------------------------- 257 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECCBGG---GCCCCTTCCEEECCSSCCE-------------------------
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceeeecC---cccccCCCCEEECcCCccc-------------------------
Confidence 999999899999999999999999999987653 2555666666666665554
Q ss_pred eCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCc
Q 035547 331 DCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNL 385 (482)
Q Consensus 331 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 385 (482)
+.+|..+..+++|++|+|++|++++.+|.. ..+++|+.+++++|+.
T Consensus 258 --------~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 258 --------GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp --------ECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred --------CcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCC
Confidence 455666677777777777777777777665 6677777777777763
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.3e-34 Score=292.49 Aligned_cols=360 Identities=17% Similarity=0.132 Sum_probs=261.9
Q ss_pred CCCCEEeCCCCcCCCCCch-hccCCCCCCEEeCCCCcccCC----CCCC-CCCCCCCEEECcCCCCcccccCCCCccccc
Q 035547 16 ENLTRVDLRSYNFTRPIPT-SMANLAQLFHMDFSSNHFSGP----IPSL-HKSRNLNYLDLSSNNLNEIHLLSNNQFENQ 89 (482)
Q Consensus 16 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~----~~~~-~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~ 89 (482)
++|++|++++|+++..... .+..+++|++|++++|.++.. .+.. ..+++|++|+|++|.++... ...+...
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~---~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVG---VHCVLQG 79 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHH---HHHHHHT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHH---HHHHHHH
Confidence 5688999999998875433 378889999999999988742 1223 66899999999999886421 0001100
Q ss_pred CCCCCcCCccccEEEccCCCCCC-----CCC-CCCCCCCCEEEcccCcccccCChhhhhc-C--CCCccEEeCCCCcccC
Q 035547 90 FPEISNMSSSFSKLRLASSKPWV-----IPI-LKNQSQLSFFYISNNQISGEIPNWIWEV-G--GVNLYFLNLSQNLLVS 160 (482)
Q Consensus 90 ~p~~~~~~~~L~~L~l~~n~l~~-----l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~--~~~L~~L~L~~n~i~~ 160 (482)
.+. ...+|++|++++|.+.. ++. +..+++|++|++++|.+++..+..+... . .++|++|++++|+++.
T Consensus 80 l~~---~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 80 LQT---PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp TCS---TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred Hhh---CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 110 00269999999999883 455 8899999999999999976555554432 1 1249999999998886
Q ss_pred CCC-----CCCCCCCccEEEccCCcccccChhhhhc-----CCCCCEEeCCCCccccc----CChhhhhcCcCccceEEc
Q 035547 161 LQE-----PYHISGRTYSFSTINKSLIGFIPEYICK-----ATYFQVLDLSNNNLSGS----IPACLITKSSTTLGVLNL 226 (482)
Q Consensus 161 ~~~-----~~~~~~~l~~L~l~~n~~~~~~~~~~~~-----l~~L~~L~l~~n~l~~~----~~~~~~~~~~~~L~~L~l 226 (482)
... .+...++|+.|++++|.+.+..+..+.. .++|+.|++++|.+.+. ++..+.... +|++|++
T Consensus 157 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~--~L~~L~L 234 (461)
T 1z7x_W 157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA--SLRELAL 234 (461)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCT--TCCEEEC
T ss_pred HHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCC--CccEEec
Confidence 431 1124689999999999987665544433 66899999999988753 455665555 9999999
Q ss_pred cCCCCCch------hhhcccCCCCCEEeCCCcccCCC----cChhhhcCCCCcEEEcccCccccccCC---CCCCCCCCC
Q 035547 227 RRNNLGVV------LKSLANCNMLQVLDLRNNHISDN----FPCWLRNAFSLQVLVFRSNNFSERISC---PRNNVSWPL 293 (482)
Q Consensus 227 ~~n~l~~~------~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~~~---~~~~~~l~~ 293 (482)
++|.++.. +..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+.... .......++
T Consensus 235 s~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 314 (461)
T 1z7x_W 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314 (461)
T ss_dssp CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCC
T ss_pred cCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcc
Confidence 99988543 22334578999999999998864 466677899999999999998743210 011123468
Q ss_pred CCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhc-----CCCCCeeeccCCcCcc----c
Q 035547 294 LKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGR-----FKSLYAPNMSHNALKG----S 364 (482)
Q Consensus 294 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~ 364 (482)
|++|++++|.+++.....+. ..+..+++|++|++++|.+++..+..+.. .++|++|+|++|.+++ .
T Consensus 315 L~~L~L~~n~l~~~~~~~l~-----~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 389 (461)
T 1z7x_W 315 LESLWVKSCSFTAACCSHFS-----SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS 389 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHH-----HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred ceeeEcCCCCCchHHHHHHH-----HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHH
Confidence 99999999998865433222 34467889999999999998776665553 6799999999999985 6
Q ss_pred ccccccCCCCCCEEeCCCCCcccc
Q 035547 365 IPSSFGNLKQIESLDLLMNNLMGK 388 (482)
Q Consensus 365 ~~~~~~~l~~L~~L~l~~N~l~~~ 388 (482)
+|..+..+++|++|++++|++++.
T Consensus 390 l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHHHHhCCCccEEECCCCCCCHH
Confidence 788888899999999999988743
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.5e-33 Score=283.02 Aligned_cols=362 Identities=14% Similarity=0.091 Sum_probs=269.8
Q ss_pred CCCCCCCCEEeCCCCcCCCC----CchhccCCCCCCEEeCCCCcccCCCCCC--CCCC----CCCEEECcCCCCcccccC
Q 035547 12 IGTLENLTRVDLRSYNFTRP----IPTSMANLAQLFHMDFSSNHFSGPIPSL--HKSR----NLNYLDLSSNNLNEIHLL 81 (482)
Q Consensus 12 ~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~l~----~L~~L~Ls~N~i~~l~~l 81 (482)
+..+++|++|++++|.++.. ++..+..+++|++|++++|.+....+.. ..++ +|++|++++|+++...
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~-- 101 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG-- 101 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGG--
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHH--
Confidence 67789999999999999853 4667888999999999999987533322 3344 7999999999887320
Q ss_pred CCCcccccCCCCCcCCccccEEEccCCCCCC-----CCC--CCCCCCCCEEEcccCcccccC----ChhhhhcCCCCccE
Q 035547 82 SNNQFENQFPEISNMSSSFSKLRLASSKPWV-----IPI--LKNQSQLSFFYISNNQISGEI----PNWIWEVGGVNLYF 150 (482)
Q Consensus 82 ~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~-----l~~--~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~~~L~~ 150 (482)
...++..+...++|++|++++|.+.. +.. ....++|++|++++|.+++.. +..+..++. |++
T Consensus 102 -----~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~--L~~ 174 (461)
T 1z7x_W 102 -----CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD--FKE 174 (461)
T ss_dssp -----HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTT--CCE
T ss_pred -----HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCC--CCE
Confidence 01123333334899999999999862 222 344678999999999998644 555566677 999
Q ss_pred EeCCCCcccCCCCCCC------CCCCccEEEccCCccccc----ChhhhhcCCCCCEEeCCCCcccccCChhhhh---cC
Q 035547 151 LNLSQNLLVSLQEPYH------ISGRTYSFSTINKSLIGF----IPEYICKATYFQVLDLSNNNLSGSIPACLIT---KS 217 (482)
Q Consensus 151 L~L~~n~i~~~~~~~~------~~~~l~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---~~ 217 (482)
|++++|.++....... ..++++.|++++|.+++. ++..+..+++|+.|++++|.+.+.....+.. ..
T Consensus 175 L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~ 254 (461)
T 1z7x_W 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP 254 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTST
T ss_pred EECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcC
Confidence 9999999876432111 246999999999999874 5778889999999999999987532222211 11
Q ss_pred cCccceEEccCCCCCc-----hhhhcccCCCCCEEeCCCcccCCCcChhhhc-----CCCCcEEEcccCccccccC--CC
Q 035547 218 STTLGVLNLRRNNLGV-----VLKSLANCNMLQVLDLRNNHISDNFPCWLRN-----AFSLQVLVFRSNNFSERIS--CP 285 (482)
Q Consensus 218 ~~~L~~L~l~~n~l~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~L~~N~i~~~~~--~~ 285 (482)
.++|++|++++|.++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++... .+
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence 3499999999999977 7888888999999999999997654444443 2699999999999986420 12
Q ss_pred CCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhh-cCCcceEEeCCCCcccc----cChHhhhcCCCCCeeeccCCc
Q 035547 286 RNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLK-IPNIFTSIDCSSNNFEG----PMPEEMGRFKSLYAPNMSHNA 360 (482)
Q Consensus 286 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~ 360 (482)
..+..+++|++|++++|.+++..+..+. ..+. ..++|++|++++|.+++ .+|..+..+++|++|++++|+
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~-----~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLEDAGVRELC-----QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHHHHHHHHH-----HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHHhhCCCccEEEccCCccccccHHHHH-----HHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 3456779999999999998754433322 2222 26799999999999996 678888999999999999999
Q ss_pred Cccccc----cccc-CCCCCCEEeCCCCCccc
Q 035547 361 LKGSIP----SSFG-NLKQIESLDLLMNNLMG 387 (482)
Q Consensus 361 l~~~~~----~~~~-~l~~L~~L~l~~N~l~~ 387 (482)
+++.-. ..+. ...+|+.|++.++.+..
T Consensus 410 i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 410 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred CCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 985311 1222 24468888888776653
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.8e-29 Score=240.63 Aligned_cols=250 Identities=20% Similarity=0.201 Sum_probs=181.7
Q ss_pred EEEccCCCCCCCCC-CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCc
Q 035547 102 KLRLASSKPWVIPI-LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKS 180 (482)
Q Consensus 102 ~L~l~~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~ 180 (482)
.++++++.++.+|. + .++|++|++++|+++...+..|..++. |++|++++|+++..
T Consensus 11 ~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~--L~~L~L~~n~l~~~------------------- 67 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQ--LTKLSLSSNGLSFK------------------- 67 (306)
T ss_dssp EEECCSSCCSSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTT--CSEEECCSSCCCEE-------------------
T ss_pred EEEcCCCCcccCCCCC--CCCCCEEECCCCccCccCHhHhhcccc--CCEEECCCCccCcc-------------------
Confidence 45555555555554 2 145566666666665322233445554 55555555555432
Q ss_pred ccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhh--hcccCCCCCEEeCCCcccCCCc
Q 035547 181 LIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLK--SLANCNMLQVLDLRNNHISDNF 258 (482)
Q Consensus 181 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~l~~L~~L~Ls~N~l~~~~ 258 (482)
+..+..+..+++|++|++++|.+. .+|..+.... +|++|++++|.++.++. .+..+++|++|++++|.+.+..
T Consensus 68 --~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 68 --GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLE--QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp --EEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCT--TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred --cCcccccccccccCEEECCCCccc-cChhhcCCCC--CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence 122455566777777777777776 4555555544 77777777777766653 6777888888888888888877
Q ss_pred ChhhhcCCCCcEEEcccCcccc-ccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcc
Q 035547 259 PCWLRNAFSLQVLVFRSNNFSE-RISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNF 337 (482)
Q Consensus 259 ~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 337 (482)
+..+..+++|++|++++|.+.+ .. +..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---------~~l~~L~~L~L~~N~l 211 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFL--PDIFTELRNLTFLDLSQCQLEQLSPTAF---------NSLSSLQVLNMSHNNF 211 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEE--CSCCTTCTTCCEEECTTSCCCEECTTTT---------TTCTTCCEEECTTSCC
T ss_pred hhhcccCcCCCEEECCCCccccccc--hhHHhhCcCCCEEECCCCCcCCcCHHHh---------cCCCCCCEEECCCCcc
Confidence 8888888888888888888876 33 5677888889999999998887766443 5678899999999999
Q ss_pred cccChHhhhcCCCCCeeeccCCcCcccccccccCCC-CCCEEeCCCCCccccCC
Q 035547 338 EGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLK-QIESLDLLMNNLMGKIP 390 (482)
Q Consensus 338 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~p 390 (482)
++..+..+..+++|+.|++++|++++..|..+..++ +|+.|++++|++++.++
T Consensus 212 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 212 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp SBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 888787889999999999999999988888999885 89999999999986544
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=1.3e-28 Score=247.61 Aligned_cols=249 Identities=18% Similarity=0.143 Sum_probs=181.0
Q ss_pred ccEEEccCCCCCCCCC-CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccC
Q 035547 100 FSKLRLASSKPWVIPI-LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTIN 178 (482)
Q Consensus 100 L~~L~l~~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~ 178 (482)
...+++++..++.+|. +. +++++|+|++|++++..+..|..+.. |++|++++|+++.+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~--L~~L~Ls~n~i~~~----------------- 114 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHH--LEVLQLGRNSIRQI----------------- 114 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTT--CCEEECCSSCCCEE-----------------
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCC--CCEEECCCCccCCc-----------------
Confidence 3455555555555554 32 46677777777776666666666666 66666666666654
Q ss_pred CcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhh-hcccCCCCCEEeCCC-cccCC
Q 035547 179 KSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLK-SLANCNMLQVLDLRN-NHISD 256 (482)
Q Consensus 179 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~Ls~-N~l~~ 256 (482)
.+..|..+++|++|++++|++.+..+..+.... +|++|++++|.++.++. .+..+++|+.|++++ |.+..
T Consensus 115 ------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~ 186 (452)
T 3zyi_A 115 ------EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS--KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY 186 (452)
T ss_dssp ------CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCT--TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE
T ss_pred ------ChhhccCcccCCEEECCCCcCCccChhhhcccC--CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccc
Confidence 345566666777777777776644444454444 77777777777766654 567778888888887 45555
Q ss_pred CcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCc
Q 035547 257 NFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNN 336 (482)
Q Consensus 257 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 336 (482)
..+..|.++++|++|++++|.+++.. .+..+++|++|+|++|.+++..+..+ ..+++|++|++++|.
T Consensus 187 i~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~---------~~l~~L~~L~L~~n~ 253 (452)
T 3zyi_A 187 ISEGAFEGLFNLKYLNLGMCNIKDMP----NLTPLVGLEELEMSGNHFPEIRPGSF---------HGLSSLKKLWVMNSQ 253 (452)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCSSCC----CCTTCTTCCEEECTTSCCSEECGGGG---------TTCTTCCEEECTTSC
T ss_pred cChhhccCCCCCCEEECCCCcccccc----cccccccccEEECcCCcCcccCcccc---------cCccCCCEEEeCCCc
Confidence 55556778888888888888887642 46778888888888888887777544 678888999999999
Q ss_pred ccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCccccCC
Q 035547 337 FEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIP 390 (482)
Q Consensus 337 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 390 (482)
+++..+..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++.+.+.
T Consensus 254 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 254 VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 988888899999999999999999997777778899999999999999886543
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=5.9e-30 Score=248.98 Aligned_cols=281 Identities=16% Similarity=0.182 Sum_probs=175.7
Q ss_pred CCCCCCCEEECcCCCCcccccCCCCcccccCCCCCcCCccccEEEccCCCCCCCCC--CCCCCCCCEEEcccCcccccCC
Q 035547 60 HKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEISNMSSSFSKLRLASSKPWVIPI--LKNQSQLSFFYISNNQISGEIP 137 (482)
Q Consensus 60 ~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~ 137 (482)
..++.....+.++|.++.++ ..+ .+++++|++++|.++.++. +.++++|++|++++|++++..|
T Consensus 28 ~~C~~~~~c~~~~~~l~~iP------------~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLNSIP------------SGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE 93 (353)
T ss_dssp CEECTTSEEECCSTTCSSCC------------TTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred CCCCCCeEeeCCCCCccccc------------ccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCH
Confidence 45666677888888777663 211 1567888888888876665 7778888888888888876666
Q ss_pred hhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCCh--hhhh
Q 035547 138 NWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPA--CLIT 215 (482)
Q Consensus 138 ~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~ 215 (482)
..|..+.. |++|++++|+++.++. ..+..+++|++|++++|++. .+|. .+..
T Consensus 94 ~~~~~l~~--L~~L~Ls~n~l~~~~~-----------------------~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~ 147 (353)
T 2z80_A 94 DSFSSLGS--LEHLDLSYNYLSNLSS-----------------------SWFKPLSSLTFLNLLGNPYK-TLGETSLFSH 147 (353)
T ss_dssp TTTTTCTT--CCEEECCSSCCSSCCH-----------------------HHHTTCTTCSEEECTTCCCS-SSCSSCSCTT
T ss_pred hhcCCCCC--CCEEECCCCcCCcCCH-----------------------hHhCCCccCCEEECCCCCCc-ccCchhhhcc
Confidence 77777776 8888888777777643 33455555555555555554 3332 3333
Q ss_pred cCcCccceEEccCC-CCCchh-hhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCC
Q 035547 216 KSSTTLGVLNLRRN-NLGVVL-KSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPL 293 (482)
Q Consensus 216 ~~~~~L~~L~l~~n-~l~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~ 293 (482)
.. +|++|++++| .++.++ ..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.... ...+..+++
T Consensus 148 l~--~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~ 223 (353)
T 2z80_A 148 LT--KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL--EIFVDVTSS 223 (353)
T ss_dssp CT--TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH--HHHHHHTTT
T ss_pred CC--CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch--hhhhhhccc
Confidence 33 5555555555 344442 34555555555555555555544555555555555555555554332 122233455
Q ss_pred CCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccc----cChHhhhcCCCCCeeeccCCcCccccccc-
Q 035547 294 LKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEG----PMPEEMGRFKSLYAPNMSHNALKGSIPSS- 368 (482)
Q Consensus 294 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~- 368 (482)
|++|++++|.+++..+..+. .......++.++++++.+++ .+|..+..+++|++|++++|+++ .+|..
T Consensus 224 L~~L~L~~n~l~~~~~~~l~------~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~ 296 (353)
T 2z80_A 224 VECLELRDTDLDTFHFSELS------TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGI 296 (353)
T ss_dssp EEEEEEESCBCTTCCCC------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTT
T ss_pred ccEEECCCCccccccccccc------cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHH
Confidence 55555555555544332221 11234556666666666654 36778899999999999999999 55555
Q ss_pred ccCCCCCCEEeCCCCCccccCCC
Q 035547 369 FGNLKQIESLDLLMNNLMGKIPT 391 (482)
Q Consensus 369 ~~~l~~L~~L~l~~N~l~~~~p~ 391 (482)
|..+++|++|++++|++.+.+|.
T Consensus 297 ~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 297 FDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp TTTCTTCCEEECCSSCBCCCHHH
T ss_pred HhcCCCCCEEEeeCCCccCcCCC
Confidence 68999999999999999977663
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.3e-28 Score=244.99 Aligned_cols=248 Identities=20% Similarity=0.160 Sum_probs=167.9
Q ss_pred ccEEEccCCCCCCCCC-CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccC
Q 035547 100 FSKLRLASSKPWVIPI-LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTIN 178 (482)
Q Consensus 100 L~~L~l~~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~ 178 (482)
.+.+++++..++.+|. +. ++++.|+|++|++++..+..|..+.. |++|++++|+++.+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~--L~~L~Ls~n~i~~i----------------- 103 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRH--LEILQLSRNHIRTI----------------- 103 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSS--CCEEECCSSCCCEE-----------------
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCC--CCEEECCCCcCCcc-----------------
Confidence 3445555555555554 22 45566666666665555555555555 55555555555543
Q ss_pred CcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhh-hcccCCCCCEEeCCC-cccCC
Q 035547 179 KSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLK-SLANCNMLQVLDLRN-NHISD 256 (482)
Q Consensus 179 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~Ls~-N~l~~ 256 (482)
.+..|..+++|++|++++|++....+..+.... +|++|++++|.++.++. .|..+++|++|++++ |.+..
T Consensus 104 ------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~ 175 (440)
T 3zyj_A 104 ------EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLS--KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY 175 (440)
T ss_dssp ------CGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCS--SCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE
T ss_pred ------ChhhccCCccCCEEECCCCcCCeeCHhHhhccc--cCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce
Confidence 345566666666666666666633333444444 66677777776666654 566677777777777 34444
Q ss_pred CcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCc
Q 035547 257 NFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNN 336 (482)
Q Consensus 257 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 336 (482)
..+..|.++++|++|++++|.++... .+..+++|++|+|++|.+++..+..+ ..+++|++|++++|.
T Consensus 176 i~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~---------~~l~~L~~L~L~~n~ 242 (440)
T 3zyj_A 176 ISEGAFEGLSNLRYLNLAMCNLREIP----NLTPLIKLDELDLSGNHLSAIRPGSF---------QGLMHLQKLWMIQSQ 242 (440)
T ss_dssp ECTTTTTTCSSCCEEECTTSCCSSCC----CCTTCSSCCEEECTTSCCCEECTTTT---------TTCTTCCEEECTTCC
T ss_pred eCcchhhcccccCeecCCCCcCcccc----ccCCCcccCEEECCCCccCccChhhh---------ccCccCCEEECCCCc
Confidence 44556777777788888777777542 36677788888888888777666443 567788888888888
Q ss_pred ccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCccccC
Q 035547 337 FEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKI 389 (482)
Q Consensus 337 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 389 (482)
+++..+..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++.+.+
T Consensus 243 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 243 IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence 88888888889999999999999999777777888999999999999887544
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=9.2e-29 Score=235.69 Aligned_cols=178 Identities=22% Similarity=0.229 Sum_probs=76.4
Q ss_pred ccccEEEccCCCCCCCCC--CCCCCCCCEEEcccCccccc--CChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccE
Q 035547 98 SSFSKLRLASSKPWVIPI--LKNQSQLSFFYISNNQISGE--IPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYS 173 (482)
Q Consensus 98 ~~L~~L~l~~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~ 173 (482)
+++++|++++|.++.+|. |.++++|++|++++|.++.. .+..+..+.. |++|++++|.++.++..+..+++|+.
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~--L~~L~Ls~n~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS--LKYLDLSFNGVITMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSC--CCEEECCSCSEEEEEEEEETCTTCCE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccc--cCEEECCCCccccChhhcCCCCCCCE
Confidence 344444454444444444 55666666666666666522 2444444444 66666666665554332223333333
Q ss_pred EEccCCcccccCh-hhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCc--hhhhcccCCCCCEEeCC
Q 035547 174 FSTINKSLIGFIP-EYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGV--VLKSLANCNMLQVLDLR 250 (482)
Q Consensus 174 L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~l~~L~~L~Ls 250 (482)
|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+.... +|++|++++|.+.. +|..+..+++|++|+++
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS--SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT--TCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc--CCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence 3333333333222 2334444444444444444333333333222 33333333333322 33333333334444444
Q ss_pred CcccCCCcChhhhcCCCCcEEEcccCccc
Q 035547 251 NNHISDNFPCWLRNAFSLQVLVFRSNNFS 279 (482)
Q Consensus 251 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 279 (482)
+|.+++..|..+..+++|++|++++|.++
T Consensus 184 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence 43333333333333333333333333333
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=2.1e-27 Score=245.36 Aligned_cols=223 Identities=22% Similarity=0.245 Sum_probs=97.0
Q ss_pred ccccEEEccCCCCCCCCCCCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEcc
Q 035547 98 SSFSKLRLASSKPWVIPILKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTI 177 (482)
Q Consensus 98 ~~L~~L~l~~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~ 177 (482)
++|+.|++++|.++.+|. .+++|++|++++|+++ .+|. .+.. |+.|++++|+++.++.. .++|+.|+++
T Consensus 81 ~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~-~l~~---~l~~--L~~L~L~~N~l~~lp~~---l~~L~~L~Ls 149 (622)
T 3g06_A 81 PELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLT-HLPA---LPSG--LCKLWIFGNQLTSLPVL---PPGLQELSVS 149 (622)
T ss_dssp TTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCC-CCCC---CCTT--CCEEECCSSCCSCCCCC---CTTCCEEECC
T ss_pred CCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCC-CCCC---CCCC--cCEEECCCCCCCcCCCC---CCCCCEEECc
Confidence 344444444444444443 3445555555555554 2332 1222 55555555555544321 1222222222
Q ss_pred CCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCC
Q 035547 178 NKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDN 257 (482)
Q Consensus 178 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 257 (482)
+|.+.+. |. ..++|+.|++++|.+. .+|. .. ++|+.|++++|.++.+|.. +++|+.|++++|.++.
T Consensus 150 ~N~l~~l-~~---~~~~L~~L~L~~N~l~-~l~~---~~--~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~- 215 (622)
T 3g06_A 150 DNQLASL-PA---LPSELCKLWAYNNQLT-SLPM---LP--SGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTS- 215 (622)
T ss_dssp SSCCSCC-CC---CCTTCCEEECCSSCCS-CCCC---CC--TTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS-
T ss_pred CCcCCCc-CC---ccCCCCEEECCCCCCC-CCcc---cC--CCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccc-
Confidence 2222211 11 1234555555555555 3331 11 2555555555555555432 2455555555555554
Q ss_pred cChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcc
Q 035547 258 FPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNF 337 (482)
Q Consensus 258 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 337 (482)
+|. .+++|++|++++|.+++.. ..+++|++|+|++|.++. +| ..+++|+.|+|++|.+
T Consensus 216 l~~---~~~~L~~L~Ls~N~L~~lp------~~l~~L~~L~Ls~N~L~~-lp------------~~~~~L~~L~Ls~N~L 273 (622)
T 3g06_A 216 LPA---LPSGLKELIVSGNRLTSLP------VLPSELKELMVSGNRLTS-LP------------MLPSGLLSLSVYRNQL 273 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCSCCC------CCCTTCCEEECCSSCCSC-CC------------CCCTTCCEEECCSSCC
T ss_pred cCC---CCCCCCEEEccCCccCcCC------CCCCcCcEEECCCCCCCc-CC------------cccccCcEEeCCCCCC
Confidence 222 1245555555555555421 233455555555555542 22 1234444444444444
Q ss_pred cccChHhhhcCCCCCeeeccCCcCccccccc
Q 035547 338 EGPMPEEMGRFKSLYAPNMSHNALKGSIPSS 368 (482)
Q Consensus 338 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 368 (482)
+ .+|..+.++++|+.|+|++|.+++..|..
T Consensus 274 ~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 274 T-RLPESLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp C-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred C-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence 4 33444444444444444444444444433
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=9.5e-29 Score=233.09 Aligned_cols=249 Identities=15% Similarity=0.078 Sum_probs=164.7
Q ss_pred CEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCCCEEeCCC
Q 035547 123 SFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSN 202 (482)
Q Consensus 123 ~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 202 (482)
++++.+++.++ .+|..+. .. +++|++++|.++.+ .+..|..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~~--~~--l~~L~l~~n~i~~~-----------------------~~~~~~~~~~L~~L~l~~ 65 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGIP--AA--SQRIFLHGNRISHV-----------------------PAASFRACRNLTILWLHS 65 (285)
T ss_dssp CEEECCSSCCS-SCCTTCC--TT--CSEEECTTSCCCEE-----------------------CTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCCC--CC--ceEEEeeCCcCCcc-----------------------CHHHcccCCCCCEEECCC
Confidence 55666666665 4454332 22 66666666666655 345566666667777776
Q ss_pred CcccccCChhhhhcCcCccceEEccCCC-CCch-hhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCcccc
Q 035547 203 NNLSGSIPACLITKSSTTLGVLNLRRNN-LGVV-LKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSE 280 (482)
Q Consensus 203 n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 280 (482)
|.+.+..|..+.... +|++|++++|. ++.+ +..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++
T Consensus 66 n~l~~~~~~~~~~l~--~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 143 (285)
T 1ozn_A 66 NVLARIDAAAFTGLA--LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143 (285)
T ss_dssp SCCCEECTTTTTTCT--TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CccceeCHhhcCCcc--CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc
Confidence 666655555555554 67777777765 6555 4566667777777777777777666677777777777777777765
Q ss_pred ccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCc
Q 035547 281 RISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNA 360 (482)
Q Consensus 281 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 360 (482)
.. +..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++..|..+..+++|+.|++++|+
T Consensus 144 ~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~---------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 144 LP--DDTFRDLGNLTHLFLHGNRISSVPERAF---------RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp CC--TTTTTTCTTCCEEECCSSCCCEECTTTT---------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cC--HhHhccCCCccEEECCCCcccccCHHHh---------cCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc
Confidence 54 4456677777777777777775544322 456777778888888877778888888888888888888
Q ss_pred CcccccccccCCCCCCEEeCCCCCccccCCCCcccCcCCCCcccCCCCCCCC
Q 035547 361 LKGSIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQSFLPTSYEGNKGLYIP 412 (482)
Q Consensus 361 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~~~~ 412 (482)
+++..+..+..+++|+.|++++|++.+.++......++.......+...|..
T Consensus 213 l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~ 264 (285)
T 1ozn_A 213 LSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSL 264 (285)
T ss_dssp CSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEE
T ss_pred CCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCC
Confidence 8866666688888888888888888865544333334444334444444433
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=1.7e-27 Score=246.00 Aligned_cols=269 Identities=20% Similarity=0.242 Sum_probs=226.2
Q ss_pred CCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccccCCCCcccccCCCCCc
Q 035547 16 ENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEISN 95 (482)
Q Consensus 16 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~~ 95 (482)
.++++|++++|.++. +|..+. ++|++|++++|.++.+++ .+++|++|+|++|+|+.++ .
T Consensus 40 ~~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp------------~--- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLP------------V--- 98 (622)
T ss_dssp HCCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCC------------C---
T ss_pred CCCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCC------------C---
Confidence 368999999999996 676665 899999999999986655 6899999999999988663 2
Q ss_pred CCccccEEEccCCCCCCCCCCCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEE
Q 035547 96 MSSSFSKLRLASSKPWVIPILKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFS 175 (482)
Q Consensus 96 ~~~~L~~L~l~~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~ 175 (482)
..++|+.|++++|.+..+|. .+++|+.|++++|+++ .+|..+ +. |++|++++|+++.++. ...+++.|+
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~-~lp~~l---~~--L~~L~Ls~N~l~~l~~---~~~~L~~L~ 167 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLT-SLPVLP---PG--LQELSVSDNQLASLPA---LPSELCKLW 167 (622)
T ss_dssp CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCS-CCCCCC---TT--CCEEECCSSCCSCCCC---CCTTCCEEE
T ss_pred CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCC-cCCCCC---CC--CCEEECcCCcCCCcCC---ccCCCCEEE
Confidence 12889999999999999987 6788999999999998 566543 44 9999999999998764 457899999
Q ss_pred ccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccC
Q 035547 176 TINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHIS 255 (482)
Q Consensus 176 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~ 255 (482)
+++|.+.+ +| ..+++|+.|++++|.+. .+|..+ . +|+.|++++|.++.+|.. +++|+.|++++|.++
T Consensus 168 L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~-~l~~~~---~--~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~ 234 (622)
T 3g06_A 168 AYNNQLTS-LP---MLPSGLQELSVSDNQLA-SLPTLP---S--ELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLT 234 (622)
T ss_dssp CCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCCCC---T--TCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCS
T ss_pred CCCCCCCC-Cc---ccCCCCcEEECCCCCCC-CCCCcc---c--hhhEEECcCCcccccCCC---CCCCCEEEccCCccC
Confidence 99999987 44 45789999999999998 466432 3 999999999999998853 489999999999999
Q ss_pred CCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCC
Q 035547 256 DNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSN 335 (482)
Q Consensus 256 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 335 (482)
+ +| ..+++|++|++++|.+++.. . .+++|+.|+|++|.++ .+|..+ ..+++|+.|+|++|
T Consensus 235 ~-lp---~~l~~L~~L~Ls~N~L~~lp---~---~~~~L~~L~Ls~N~L~-~lp~~l---------~~l~~L~~L~L~~N 294 (622)
T 3g06_A 235 S-LP---VLPSELKELMVSGNRLTSLP---M---LPSGLLSLSVYRNQLT-RLPESL---------IHLSSETTVNLEGN 294 (622)
T ss_dssp C-CC---CCCTTCCEEECCSSCCSCCC---C---CCTTCCEEECCSSCCC-SCCGGG---------GGSCTTCEEECCSC
T ss_pred c-CC---CCCCcCcEEECCCCCCCcCC---c---ccccCcEEeCCCCCCC-cCCHHH---------hhccccCEEEecCC
Confidence 8 45 45689999999999998653 2 6789999999999999 556544 68899999999999
Q ss_pred cccccChHhhhcCC
Q 035547 336 NFEGPMPEEMGRFK 349 (482)
Q Consensus 336 ~l~~~~~~~~~~l~ 349 (482)
.+++..|..+..++
T Consensus 295 ~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 295 PLSERTLQALREIT 308 (622)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCCcCHHHHHhcc
Confidence 99998888887665
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=3.1e-28 Score=236.86 Aligned_cols=277 Identities=17% Similarity=0.144 Sum_probs=214.0
Q ss_pred CCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCcccccCCCCccccc
Q 035547 11 SIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLNEIHLLSNNQFENQ 89 (482)
Q Consensus 11 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~ 89 (482)
+-..++.....+.+++.++. +|..+. ++|++|++++|.++++++.. ..+++|++|++++|+++.+.
T Consensus 26 ~~~~C~~~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------- 92 (353)
T 2z80_A 26 ASLSCDRNGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE---------- 92 (353)
T ss_dssp -CCEECTTSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC----------
T ss_pred cCCCCCCCeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC----------
Confidence 34455666778888888887 565544 58888888888888777755 78888888888888777552
Q ss_pred CCCCCcCCccccEEEccCCCCCCCCC--CCCCCCCCEEEcccCcccccCCh--hhhhcCCCCccEEeCCCC-cccCCCCC
Q 035547 90 FPEISNMSSSFSKLRLASSKPWVIPI--LKNQSQLSFFYISNNQISGEIPN--WIWEVGGVNLYFLNLSQN-LLVSLQEP 164 (482)
Q Consensus 90 ~p~~~~~~~~L~~L~l~~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~~~L~~L~L~~n-~i~~~~~~ 164 (482)
|..+...++|++|++++|.++.++. +.++++|++|++++|+++ .+|. .+..++. |++|++++| .++.+++.
T Consensus 93 -~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~--L~~L~l~~n~~~~~~~~~ 168 (353)
T 2z80_A 93 -EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTK--LQILRVGNMDTFTKIQRK 168 (353)
T ss_dssp -TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTT--CCEEEEEESSSCCEECTT
T ss_pred -HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCC--CcEEECCCCccccccCHH
Confidence 3444444788888888888888776 788888888888888887 4444 6777777 888888888 57777655
Q ss_pred CC-CCCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhh-hcCcCccceEEccCCCCCchhh----hc
Q 035547 165 YH-ISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLI-TKSSTTLGVLNLRRNNLGVVLK----SL 238 (482)
Q Consensus 165 ~~-~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~----~~ 238 (482)
.+ .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+. .+|..+. ... +|++|++++|.++.++. ..
T Consensus 169 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~l~~~ 245 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTS--SVECLELRDTDLDTFHFSELSTG 245 (353)
T ss_dssp TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTT--TEEEEEEESCBCTTCCCC-----
T ss_pred HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcc--cccEEECCCCccccccccccccc
Confidence 44 7888888999988888888888999999999999999886 5555443 344 89999999998866542 22
Q ss_pred ccCCCCCEEeCCCcccCC----CcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCC
Q 035547 239 ANCNMLQVLDLRNNHISD----NFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLS 309 (482)
Q Consensus 239 ~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 309 (482)
.....++.++++++.+.+ ..|..+..+++|++|++++|++++.. ...+..+++|++|++++|.+.+..|
T Consensus 246 ~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~--~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVP--DGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp -CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccC--HHHHhcCCCCCEEEeeCCCccCcCC
Confidence 345678899999888875 25677889999999999999999654 4557899999999999999998776
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=5.1e-28 Score=232.41 Aligned_cols=233 Identities=18% Similarity=0.134 Sum_probs=137.4
Q ss_pred ccccEEEccCCCCCCCCC-CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEc
Q 035547 98 SSFSKLRLASSKPWVIPI-LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFST 176 (482)
Q Consensus 98 ~~L~~L~l~~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l 176 (482)
..++.|++++|.+..+|. +..+++|++|+|++|.++ .+|..+..+.. |++|++++|+++.
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~--L~~L~Ls~n~l~~---------------- 141 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAG--LETLTLARNPLRA---------------- 141 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTT--CSEEEEESCCCCC----------------
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCC--CCEEECCCCcccc----------------
Confidence 456666666666666666 555666666666666666 56666666655 6666666665554
Q ss_pred cCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCC
Q 035547 177 INKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISD 256 (482)
Q Consensus 177 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 256 (482)
+|..+..+++|++|++++|++.+.+|..+.... ++..+..+++|++|++++|.++.
T Consensus 142 --------lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~----------------~~~~~~~l~~L~~L~L~~n~l~~ 197 (328)
T 4fcg_A 142 --------LPASIASLNRLRELSIRACPELTELPEPLASTD----------------ASGEHQGLVNLQSLRLEWTGIRS 197 (328)
T ss_dssp --------CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-----------------CCCEEESTTCCEEEEEEECCCC
T ss_pred --------CcHHHhcCcCCCEEECCCCCCccccChhHhhcc----------------chhhhccCCCCCEEECcCCCcCc
Confidence 356677888888888888777777776554310 01123334444444444444442
Q ss_pred CcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCc
Q 035547 257 NFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNN 336 (482)
Q Consensus 257 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 336 (482)
+|..+..+++|++|++++|.+++. +..+..+++|++|++++|.+.+.+|..+ ..+++|++|++++|.
T Consensus 198 -lp~~l~~l~~L~~L~L~~N~l~~l---~~~l~~l~~L~~L~Ls~n~~~~~~p~~~---------~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 198 -LPASIANLQNLKSLKIRNSPLSAL---GPAIHHLPKLEELDLRGCTALRNYPPIF---------GGRAPLKRLILKDCS 264 (328)
T ss_dssp -CCGGGGGCTTCCEEEEESSCCCCC---CGGGGGCTTCCEEECTTCTTCCBCCCCT---------TCCCCCCEEECTTCT
T ss_pred -chHhhcCCCCCCEEEccCCCCCcC---chhhccCCCCCEEECcCCcchhhhHHHh---------cCCCCCCEEECCCCC
Confidence 344444444444444444444432 1234444445555555544444444322 344555555555555
Q ss_pred ccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCcc
Q 035547 337 FEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLM 386 (482)
Q Consensus 337 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 386 (482)
+.+.+|..+..+++|++|+|++|++.+.+|..+..+++|+.+++..|.+.
T Consensus 265 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred chhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 55566666777777888888887777777777777777877777766443
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2.4e-27 Score=238.43 Aligned_cols=248 Identities=17% Similarity=0.086 Sum_probs=206.1
Q ss_pred cEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccC
Q 035547 149 YFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRR 228 (482)
Q Consensus 149 ~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~ 228 (482)
..++.++..++.+|..++ ++++.|++++|.+.+..++.|..+++|+.|++++|.+.+..+..+.... +|++|++++
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~L~~ 132 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA--SLNTLELFD 132 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT--TCCEEECCS
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcc--cCCEEECCC
Confidence 344444444554443332 3455555555555556678899999999999999999977778888777 999999999
Q ss_pred CCCCchhh-hcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccC-ccccccCCCCCCCCCCCCCEEecCCCCCcc
Q 035547 229 NNLGVVLK-SLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSN-NFSERISCPRNNVSWPLLKIVDLASNKFSG 306 (482)
Q Consensus 229 n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 306 (482)
|.++.+|. .+..+++|++|++++|.+++..+..|..+++|++|++++| .+.... ...+..+++|++|+|++|.+++
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~--~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS--EGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC--TTTTTTCTTCCEEECTTSCCSS
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC--hhhccCCCCCCEEECCCCcccc
Confidence 99998886 4888999999999999999887889999999999999995 454443 5678999999999999999986
Q ss_pred cCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCcc
Q 035547 307 RLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLM 386 (482)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 386 (482)
... +..+++|++|+|++|.+++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|+++
T Consensus 211 ~~~-----------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 211 MPN-----------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp CCC-----------CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ccc-----------ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence 532 367899999999999999999999999999999999999999888999999999999999999999
Q ss_pred ccCCCC-cccCcCCCCcccCCCCCCCCC
Q 035547 387 GKIPTS-TQLQSFLPTSYEGNKGLYIPP 413 (482)
Q Consensus 387 ~~~p~~-~~~~~~~~~~~~~n~~~~~~~ 413 (482)
+..+.. ..+..+..+++.+||+.|.+.
T Consensus 280 ~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 280 SLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp CCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred ccChHHhccccCCCEEEccCCCcCCCCC
Confidence 665543 346677888999999988654
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.7e-27 Score=237.14 Aligned_cols=229 Identities=18% Similarity=0.102 Sum_probs=195.5
Q ss_pred CccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhh-hcccCCCCCEEe
Q 035547 170 RTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLK-SLANCNMLQVLD 248 (482)
Q Consensus 170 ~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~ 248 (482)
+++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..+.... +|++|++++|.++.++. .+..+++|++|+
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA--NLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCS--SCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCc--cCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 344444444555445567899999999999999999977777787777 99999999999999886 688999999999
Q ss_pred CCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcce
Q 035547 249 LRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFT 328 (482)
Q Consensus 249 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~ 328 (482)
+++|.+++..+..|..+++|++|++++|...+..+ ...+..+++|++|+|++|.++.... +..+++|+
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~-----------~~~l~~L~ 210 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCNLREIPN-----------LTPLIKLD 210 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTSCCSSCCC-----------CTTCSSCC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCCcCccccc-----------cCCCcccC
Confidence 99999999888899999999999999954433332 5688999999999999999985432 36789999
Q ss_pred EEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCccccCCCC-cccCcCCCCcccCCC
Q 035547 329 SIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPTS-TQLQSFLPTSYEGNK 407 (482)
Q Consensus 329 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~ 407 (482)
+|+|++|.+++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++++..+.. ..+..+..+++.+||
T Consensus 211 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 9999999999999999999999999999999999888999999999999999999999665543 346677888999999
Q ss_pred CCCCC
Q 035547 408 GLYIP 412 (482)
Q Consensus 408 ~~~~~ 412 (482)
+.|.+
T Consensus 291 ~~CdC 295 (440)
T 3zyj_A 291 WNCNC 295 (440)
T ss_dssp EECSS
T ss_pred ccCCC
Confidence 99865
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.9e-27 Score=222.90 Aligned_cols=197 Identities=18% Similarity=0.145 Sum_probs=79.2
Q ss_pred EEEccCCCCCCCCCCCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCC-CCCCccEEEccCCc
Q 035547 102 KLRLASSKPWVIPILKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYH-ISGRTYSFSTINKS 180 (482)
Q Consensus 102 ~L~l~~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~-~~~~l~~L~l~~n~ 180 (482)
.++++++.++.+|. .-.++|++|++++|.+++..+..|..++. |++|++++|.++.+.+..+ .+++|+.|++++|.
T Consensus 15 ~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~--L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 15 TTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRN--LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTT--CCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCC--CCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 34444444444443 11234555555555554433344444444 5555554444444321111 22222222222222
Q ss_pred -ccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhh-hcccCCCCCEEeCCCcccCCCc
Q 035547 181 -LIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLK-SLANCNMLQVLDLRNNHISDNF 258 (482)
Q Consensus 181 -~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~ 258 (482)
+.+..+..+..+++|++|++++|.+.+..|..+.... +|++|++++|.++.++. .+..+++|++|++++|.+++..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA--ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT--TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc--CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 2222233444444455555555544433333333333 44444444444433332 2334444444444444444433
Q ss_pred ChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCc
Q 035547 259 PCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFS 305 (482)
Q Consensus 259 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 305 (482)
+..|..+++|++|++++|.+++.. +..+..+++|++|++++|.++
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVH--PHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCS
T ss_pred HHHhcCccccCEEECCCCcccccC--HhHccCcccccEeeCCCCcCC
Confidence 333444444444444444444333 233344444444444444443
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.4e-27 Score=229.46 Aligned_cols=234 Identities=15% Similarity=0.092 Sum_probs=155.6
Q ss_pred CCCCCCEEECcCCCCcccccCCCCcccccCCCCCcCCccccEEEccCCCCCCCCC-CCCCCCCCEEEcccCcccccCChh
Q 035547 61 KSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEISNMSSSFSKLRLASSKPWVIPI-LKNQSQLSFFYISNNQISGEIPNW 139 (482)
Q Consensus 61 ~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~ 139 (482)
...++++|+|++|+++.++ ..+..+++|+.|++++|.+..+|. ++++++|++|++++|+++ .+|..
T Consensus 79 ~~~~l~~L~L~~n~l~~lp------------~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~ 145 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFP------------DQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPAS 145 (328)
T ss_dssp TSTTCCEEEEESSCCSSCC------------SCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGG
T ss_pred cccceeEEEccCCCchhcC------------hhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHH
Confidence 3589999999999988663 333334899999999999999998 999999999999999999 88999
Q ss_pred hhhcCCCCccEEeCCCCcccC-CCCCCCCCCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCc
Q 035547 140 IWEVGGVNLYFLNLSQNLLVS-LQEPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSS 218 (482)
Q Consensus 140 ~~~l~~~~L~~L~L~~n~i~~-~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 218 (482)
+..++. |++|++++|.+.. ++..+.. . ..+..+..+++|++|++++|++
T Consensus 146 l~~l~~--L~~L~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l------------- 195 (328)
T 4fcg_A 146 IASLNR--LRELSIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGI------------- 195 (328)
T ss_dssp GGGCTT--CCEEEEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECC-------------
T ss_pred HhcCcC--CCEEECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCc-------------
Confidence 999988 9999999976544 2211100 0 0111233344555555555544
Q ss_pred CccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEe
Q 035547 219 TTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVD 298 (482)
Q Consensus 219 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~ 298 (482)
+.+|..+..+++|++|++++|.+++ .|..+..+++|++|++++|.+.+.. +..++.+++|++|+
T Consensus 196 -------------~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~--p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 196 -------------RSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNY--PPIFGGRAPLKRLI 259 (328)
T ss_dssp -------------CCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBC--CCCTTCCCCCCEEE
T ss_pred -------------CcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhh--HHHhcCCCCCCEEE
Confidence 4444445555555555555555554 3334555555555555555555444 34455556666666
Q ss_pred cCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCc
Q 035547 299 LASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALK 362 (482)
Q Consensus 299 Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 362 (482)
+++|.+.+.+|..+ ..+++|++|++++|++.+.+|+.++.+++|+.+++..+.+.
T Consensus 260 L~~n~~~~~~p~~~---------~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 260 LKDCSNLLTLPLDI---------HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCBCCTTG---------GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCCCchhhcchhh---------hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 66665555555433 45666667777777777778888888888888888877665
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=5.4e-29 Score=238.37 Aligned_cols=241 Identities=19% Similarity=0.192 Sum_probs=143.4
Q ss_pred ccccEEEccCCCCCCCCC--CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEE
Q 035547 98 SSFSKLRLASSKPWVIPI--LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFS 175 (482)
Q Consensus 98 ~~L~~L~l~~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~ 175 (482)
++|++|++++|.+..++. |.++++|++|++++|++++..+ +..++. |++|++++|+++.+
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~--L~~L~Ls~n~l~~l-------------- 95 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLST--LRTLDLNNNYVQEL-------------- 95 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTT--CCEEECCSSEEEEE--------------
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCC--CCEEECcCCccccc--------------
Confidence 445555555555554442 5555555555555555553332 444444 55555555555443
Q ss_pred ccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhh-hcccCCCCCEEeCCCccc
Q 035547 176 TINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLK-SLANCNMLQVLDLRNNHI 254 (482)
Q Consensus 176 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~Ls~N~l 254 (482)
...++|+.|++++|++.+..+.. . ++|++|++++|.++.++. .+..+++|++|++++|.+
T Consensus 96 --------------~~~~~L~~L~l~~n~l~~~~~~~---~--~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 96 --------------LVGPSIETLHAANNNISRVSCSR---G--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp --------------EECTTCCEEECCSSCCSEEEECC---C--SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred --------------cCCCCcCEEECCCCccCCcCccc---c--CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence 12356777777777776433322 1 267777777777766644 566677777777777777
Q ss_pred CCCcChhh-hcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCC
Q 035547 255 SDNFPCWL-RNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCS 333 (482)
Q Consensus 255 ~~~~~~~~-~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 333 (482)
++..+..+ ..+++|++|++++|.+++... ...+++|++|+|++|.+++..+. + ..+++|++|+++
T Consensus 157 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~l~~L~~L~Ls~N~l~~l~~~-~---------~~l~~L~~L~L~ 222 (317)
T 3o53_A 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKG----QVVFAKLKTLDLSSNKLAFMGPE-F---------QSAAGVTWISLR 222 (317)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSCCCEEEC----CCCCTTCCEEECCSSCCCEECGG-G---------GGGTTCSEEECT
T ss_pred CcccHHHHhhccCcCCEEECCCCcCccccc----ccccccCCEEECCCCcCCcchhh-h---------cccCcccEEECc
Confidence 76555555 356777777777777776531 22367777777777777654332 2 355666666666
Q ss_pred CCcccccChHhhhcCCCCCeeeccCCcCc-ccccccccCCCCCCEEeCCCC-CccccCC
Q 035547 334 SNNFEGPMPEEMGRFKSLYAPNMSHNALK-GSIPSSFGNLKQIESLDLLMN-NLMGKIP 390 (482)
Q Consensus 334 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~l~~N-~l~~~~p 390 (482)
+|.+++ +|..+..+++|+.|++++|.+. +.+|..+..+++|+.+++++| .+.+..|
T Consensus 223 ~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 223 NNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp TSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 666663 4555666666777777777666 556666666666666666633 3444333
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=8.7e-29 Score=236.92 Aligned_cols=240 Identities=18% Similarity=0.168 Sum_probs=144.1
Q ss_pred cCCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccccCCCCccccc
Q 035547 10 DSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIHLLSNNQFENQ 89 (482)
Q Consensus 10 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~ 89 (482)
..+..+++|++|++++|.+++..|..|.++++|++|++++|.+++..+ ...+++|++|++++|+++.++
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~---------- 96 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---------- 96 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----------
T ss_pred HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----------
Confidence 345566788888888888888777788888888888888888876554 677888888888888777552
Q ss_pred CCCCCcCCccccEEEccCCCCCCCCCCCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCC--C
Q 035547 90 FPEISNMSSSFSKLRLASSKPWVIPILKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYH--I 167 (482)
Q Consensus 90 ~p~~~~~~~~L~~L~l~~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~--~ 167 (482)
.. ++|+.|++++|.+..++. ..+++|++|++++|++++..+..+..++. |++|++++|+++..+...+ .
T Consensus 97 --~~----~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~--L~~L~Ls~N~l~~~~~~~~~~~ 167 (317)
T 3o53_A 97 --VG----PSIETLHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSR--VQYLDLKLNEIDTVNFAELAAS 167 (317)
T ss_dssp --EC----TTCCEEECCSSCCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSS--EEEEECTTSCCCEEEGGGGGGG
T ss_pred --CC----CCcCEEECCCCccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCC--CCEEECCCCCCCcccHHHHhhc
Confidence 10 667777777777775543 23566777777777777655666666666 7777777777776532221 3
Q ss_pred CCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEE
Q 035547 168 SGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVL 247 (482)
Q Consensus 168 ~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L 247 (482)
+++|+.|++++|.+.+..+ ...+++|+.|++++|++. .+|..+.... +|++|++++|.++.+|..+..+++|+.|
T Consensus 168 l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~--~L~~L~L~~N~l~~l~~~~~~l~~L~~L 242 (317)
T 3o53_A 168 SDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLA-FMGPEFQSAA--GVTWISLRNNKLVLIEKALRFSQNLEHF 242 (317)
T ss_dssp TTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCC-EECGGGGGGT--TCSEEECTTSCCCEECTTCCCCTTCCEE
T ss_pred cCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCC-cchhhhcccC--cccEEECcCCcccchhhHhhcCCCCCEE
Confidence 4455555555555444311 122445555555555554 2333333333 4555555555555555444444555555
Q ss_pred eCCCcccC-CCcChhhhcCCCCcEEEcc
Q 035547 248 DLRNNHIS-DNFPCWLRNAFSLQVLVFR 274 (482)
Q Consensus 248 ~Ls~N~l~-~~~~~~~~~l~~L~~L~L~ 274 (482)
++++|.+. +..+.++..+++|+.++++
T Consensus 243 ~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp ECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred EccCCCccCcCHHHHHhccccceEEECC
Confidence 55555544 3344444444445544444
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=5.7e-28 Score=230.69 Aligned_cols=251 Identities=18% Similarity=0.172 Sum_probs=132.3
Q ss_pred CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCC--CCCC-------CCCCccEEEccCCcccccCh
Q 035547 116 LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQ--EPYH-------ISGRTYSFSTINKSLIGFIP 186 (482)
Q Consensus 116 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~--~~~~-------~~~~l~~L~l~~n~~~~~~~ 186 (482)
++..++|+.|++++|.+ .+|..+... ++.|++++|+++... ..+. .+++++.|++++|.+.+..|
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~----L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI----IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH----HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH----HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 44556677777777777 666665543 777777777775431 1111 23445555555555554444
Q ss_pred hhh--hcCCCCCEEeCCCCcccccCChhhhhcC---cCccceEEccCCCCCchh-hhcccCCCCCEEeCCCcccCCC--c
Q 035547 187 EYI--CKATYFQVLDLSNNNLSGSIPACLITKS---STTLGVLNLRRNNLGVVL-KSLANCNMLQVLDLRNNHISDN--F 258 (482)
Q Consensus 187 ~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~Ls~N~l~~~--~ 258 (482)
..+ ..+++|++|++++|++.+. |..+.... .++|++|++++|.++.++ ..+..+++|++|++++|++.+. .
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence 443 5566666666666666543 54444330 015666666666665554 4555556666666666655432 1
Q ss_pred Chhh--hcCCCCcEEEcccCccccccCC-CCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCC
Q 035547 259 PCWL--RNAFSLQVLVFRSNNFSERISC-PRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSN 335 (482)
Q Consensus 259 ~~~~--~~l~~L~~L~L~~N~i~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 335 (482)
+..+ ..+++|++|++++|.+++.... ...+..+++|++|++++|.+++..|... ...+++|++|++++|
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--------~~~l~~L~~L~Ls~N 263 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS--------CDWPSQLNSLNLSFT 263 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC--------CCCCTTCCEEECTTS
T ss_pred HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh--------hhhcCCCCEEECCCC
Confidence 2222 4555666666666655522100 1222345556666666666555443111 123455666666666
Q ss_pred cccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCcc
Q 035547 336 NFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLM 386 (482)
Q Consensus 336 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 386 (482)
.++ .+|..+. ++|++|+|++|++++. |. +..+++|++|++++|+++
T Consensus 264 ~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 264 GLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred ccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 655 3444333 5556666666665533 43 555556666666666554
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.7e-27 Score=227.35 Aligned_cols=242 Identities=16% Similarity=0.151 Sum_probs=163.7
Q ss_pred cccEEEccCCCCCCCCC-CCCCCCCCEEEcccCccc-ccCChhhh-------hcCCCCccEEeCCCCcccC-CCCCC--C
Q 035547 99 SFSKLRLASSKPWVIPI-LKNQSQLSFFYISNNQIS-GEIPNWIW-------EVGGVNLYFLNLSQNLLVS-LQEPY--H 166 (482)
Q Consensus 99 ~L~~L~l~~n~l~~l~~-~~~l~~L~~L~Ls~n~l~-~~~~~~~~-------~l~~~~L~~L~L~~n~i~~-~~~~~--~ 166 (482)
+|+.+++++|.+ .+|. +... |+.|++++|.++ ..+|..+. .+.. |++|++++|++++ .+..+ .
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISG--LQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSC--CCEEEEEEEBCBSCCCCCSSSC
T ss_pred CceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCC--ccEEEccCCcccchhHHHHHHh
Confidence 344444444444 4443 2221 555555555552 23343332 3444 5555555555552 33333 2
Q ss_pred CCCCccEEEccCCcccccChhhhhcC-----CCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCc---hhhhc
Q 035547 167 ISGRTYSFSTINKSLIGFIPEYICKA-----TYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGV---VLKSL 238 (482)
Q Consensus 167 ~~~~l~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~ 238 (482)
.+++|+.|++++|.+.+. |..+..+ ++|++|++++|++.+..|..+.... +|++|++++|.+.. ++..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP--ALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS--SCCEEECCSCTTCHHHHHHHHS
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC--CCCEEECCCCCcCcchHHHHHH
Confidence 455566666666666555 5666665 7888888888888766667776666 88888888888643 34444
Q ss_pred --ccCCCCCEEeCCCcccCCC---cChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHH
Q 035547 239 --ANCNMLQVLDLRNNHISDN---FPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWL 313 (482)
Q Consensus 239 --~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 313 (482)
..+++|++|++++|.+++. ....+..+++|++|++++|.+++..+ ...+..+++|++|+|++|.++ .+|..
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~Ls~N~l~-~ip~~-- 271 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG-APSCDWPSQLNSLNLSFTGLK-QVPKG-- 271 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-CSCCCCCTTCCEEECTTSCCS-SCCSS--
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-hhhhhhcCCCCEEECCCCccC-hhhhh--
Confidence 7888999999999998842 22445677899999999999987653 245667899999999999998 45532
Q ss_pred HHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcc
Q 035547 314 LTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKG 363 (482)
Q Consensus 314 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 363 (482)
..++|++|++++|++++. |. +..+++|++|+|++|++++
T Consensus 272 ---------~~~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 272 ---------LPAKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp ---------CCSEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred ---------ccCCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 227899999999999976 65 8999999999999999974
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=5.9e-27 Score=237.03 Aligned_cols=150 Identities=21% Similarity=0.148 Sum_probs=78.0
Q ss_pred CCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCch-hhhcccCCCCCEEeCCCcccCCCcChhhh-cCCCCcE
Q 035547 193 TYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVV-LKSLANCNMLQVLDLRNNHISDNFPCWLR-NAFSLQV 270 (482)
Q Consensus 193 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~ 270 (482)
++|+.|++++|.+.+..+.. . ++|+.|++++|.++.+ |..+..+++|+.|++++|.+++..|..+. .+++|++
T Consensus 99 ~~L~~L~L~~N~l~~~~~~~---l--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCSR---G--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp TTCCEEECCSSCCCCEEECC---C--SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred CCcCEEECcCCcCCCCCccc---c--CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence 44555555555554322221 1 1445555555555443 22344445555555555555544444443 4455555
Q ss_pred EEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCC
Q 035547 271 LVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKS 350 (482)
Q Consensus 271 L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 350 (482)
|+|++|.+++.. +. ..+++|+.|+|++|.+++..|. +..+++
T Consensus 174 L~Ls~N~l~~~~--------------------------~~-----------~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~ 215 (487)
T 3oja_A 174 LNLQYNFIYDVK--------------------------GQ-----------VVFAKLKTLDLSSNKLAFMGPE-FQSAAG 215 (487)
T ss_dssp EECTTSCCCEEE--------------------------CC-----------CCCTTCCEEECCSSCCCEECGG-GGGGTT
T ss_pred EecCCCcccccc--------------------------cc-----------ccCCCCCEEECCCCCCCCCCHh-HcCCCC
Confidence 555555554432 21 2244555555555555544333 666677
Q ss_pred CCeeeccCCcCcccccccccCCCCCCEEeCCCCCcc
Q 035547 351 LYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLM 386 (482)
Q Consensus 351 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 386 (482)
|+.|+|++|.++ .+|..+..+++|+.|++++|++.
T Consensus 216 L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred ccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence 777777777776 45666666677777777777666
No 68
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=1.4e-28 Score=256.14 Aligned_cols=355 Identities=12% Similarity=0.044 Sum_probs=220.6
Q ss_pred CCCCCCEEeCCCCcCCCCCchhccC-CC-CCCEEeCCCCc-ccC-CCCCC-CCCCCCCEEECcCCCCcccccCCCCcccc
Q 035547 14 TLENLTRVDLRSYNFTRPIPTSMAN-LA-QLFHMDFSSNH-FSG-PIPSL-HKSRNLNYLDLSSNNLNEIHLLSNNQFEN 88 (482)
Q Consensus 14 ~l~~L~~L~L~~n~l~~~~~~~~~~-l~-~L~~L~L~~n~-l~~-~~~~~-~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~ 88 (482)
.+++|++|+|++|.+++..+..+.. ++ +|++|++++|. +.. ..+.. ..+++|++|+|++|.++... ..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~---~~---- 182 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD---GK---- 182 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCC---SH----
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcc---hh----
Confidence 5778888888888777655555555 33 48888888776 211 01111 46788888888888654210 00
Q ss_pred cCCCCCcCCccccEEEccCCCCCCC-----CC-CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCC------
Q 035547 89 QFPEISNMSSSFSKLRLASSKPWVI-----PI-LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQN------ 156 (482)
Q Consensus 89 ~~p~~~~~~~~L~~L~l~~n~l~~l-----~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n------ 156 (482)
.++......++|+.|++++|.+..+ +. +.++++|++|++++|.+. .++..+..++. |+.|++++.
T Consensus 183 ~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~--L~~L~l~~~~~~~~~ 259 (592)
T 3ogk_B 183 WLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAAN--LEEFCGGSLNEDIGM 259 (592)
T ss_dssp HHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTT--CCEEEECBCCCCTTC
T ss_pred HHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhhH--HHhhcccccccccch
Confidence 0111111227788888888887633 22 567788888888888876 35666666666 777777642
Q ss_pred ---------------------cccCCCCCCCCCCCccEEEccCCcccccCh-hhhhcCCCCCEEeCCCCcccccCChhhh
Q 035547 157 ---------------------LLVSLQEPYHISGRTYSFSTINKSLIGFIP-EYICKATYFQVLDLSNNNLSGSIPACLI 214 (482)
Q Consensus 157 ---------------------~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 214 (482)
....++..+..+++|+.|++++|.+.+... ..+..+++|+.|+++++...+.++....
T Consensus 260 ~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~ 339 (592)
T 3ogk_B 260 PEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQ 339 (592)
T ss_dssp TTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHH
Confidence 122222222245677777777777554322 3356677777777773322222232223
Q ss_pred hcCcCccceEEccC-----------CCCCc--hhhhcccCCCCCEEeCCCcccCCCcChhhhc-CCCCcEEEcc----cC
Q 035547 215 TKSSTTLGVLNLRR-----------NNLGV--VLKSLANCNMLQVLDLRNNHISDNFPCWLRN-AFSLQVLVFR----SN 276 (482)
Q Consensus 215 ~~~~~~L~~L~l~~-----------n~l~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~----~N 276 (482)
... +|++|++++ +.++. ++.....+++|++|+++.|.+++..+..+.. +++|+.|+++ .|
T Consensus 340 ~~~--~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n 417 (592)
T 3ogk_B 340 YCK--QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE 417 (592)
T ss_dssp HCT--TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCS
T ss_pred hCC--CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCc
Confidence 333 788888883 45532 3334556788888888777777655555554 7888888886 45
Q ss_pred ccccccC---CCCCCCCCCCCCEEecCCCC--CcccCCHHHHHHHHHHHhhcCCcceEEeCCCCccccc-ChHhhhcCCC
Q 035547 277 NFSERIS---CPRNNVSWPLLKIVDLASNK--FSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGP-MPEEMGRFKS 350 (482)
Q Consensus 277 ~i~~~~~---~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~ 350 (482)
.+++... ....+.++++|++|++++|. +++.... .....+++|++|++++|.+++. ++..+..+++
T Consensus 418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~--------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 489 (592)
T 3ogk_B 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS--------YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPN 489 (592)
T ss_dssp CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH--------HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTT
T ss_pred cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH--------HHHHhCccceEeeccCCCCCHHHHHHHHhcCcc
Confidence 5654210 01124567888888887643 4432221 2235578899999999988763 3455577899
Q ss_pred CCeeeccCCcCccc-ccccccCCCCCCEEeCCCCCcccc
Q 035547 351 LYAPNMSHNALKGS-IPSSFGNLKQIESLDLLMNNLMGK 388 (482)
Q Consensus 351 L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~ 388 (482)
|++|+|++|.+++. ++..+..+++|+.|++++|+++..
T Consensus 490 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 490 LQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred cCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 99999999998744 444456788999999999987643
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.4e-26 Score=234.38 Aligned_cols=236 Identities=19% Similarity=0.177 Sum_probs=153.3
Q ss_pred CCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccccCCCCcccccCCCC
Q 035547 14 TLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEI 93 (482)
Q Consensus 14 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~ 93 (482)
.+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++.++ ...+++|++|+|++|.|+.++ ..
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~------------~~ 98 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL------------VG 98 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE------------EC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC------------CC
Confidence 44589999999999999888899999999999999999987665 688999999999999887663 11
Q ss_pred CcCCccccEEEccCCCCCCCCCCCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccE
Q 035547 94 SNMSSSFSKLRLASSKPWVIPILKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYS 173 (482)
Q Consensus 94 ~~~~~~L~~L~l~~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~ 173 (482)
++|+.|++++|.+..++. ..+++|+.|++++|.+++..|..+..++. |+.|++++|.++..+
T Consensus 99 ----~~L~~L~L~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~Ls~N~l~~~~----------- 160 (487)
T 3oja_A 99 ----PSIETLHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSR--VQYLDLKLNEIDTVN----------- 160 (487)
T ss_dssp ----TTCCEEECCSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSS--EEEEECTTSCCCEEE-----------
T ss_pred ----CCcCEEECcCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCC--CCEEECCCCCCCCcC-----------
Confidence 678888888888876654 33567888888888887776777777776 777777777777643
Q ss_pred EEccCCcccccChhhhh-cCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCc
Q 035547 174 FSTINKSLIGFIPEYIC-KATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNN 252 (482)
Q Consensus 174 L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N 252 (482)
|..+. .+++|+.|++++|.+.+. |... .. ++|++|++++|.++.+|..+..+++|+.|++++|
T Consensus 161 ------------~~~l~~~l~~L~~L~Ls~N~l~~~-~~~~-~l--~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 161 ------------FAELAASSDTLEHLNLQYNFIYDV-KGQV-VF--AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN 224 (487)
T ss_dssp ------------GGGGGGGTTTCCEEECTTSCCCEE-ECCC-CC--TTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS
T ss_pred ------------hHHHhhhCCcccEEecCCCccccc-cccc-cC--CCCCEEECCCCCCCCCCHhHcCCCCccEEEecCC
Confidence 33333 455555555555555432 1111 12 2555555555555555555555555555555555
Q ss_pred ccCCCcChhhhcCCCCcEEEcccCccc-cccCCCCCCCCCCCCCEEec
Q 035547 253 HISDNFPCWLRNAFSLQVLVFRSNNFS-ERISCPRNNVSWPLLKIVDL 299 (482)
Q Consensus 253 ~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~~~l~~L~~L~L 299 (482)
.+++ +|..+..+++|+.|++++|.+. +.. +..+..++.|+.+++
T Consensus 225 ~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~--~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 225 KLVL-IEKALRFSQNLEHFDLRGNGFHCGTL--RDFFSKNQRVQTVAK 269 (487)
T ss_dssp CCCE-ECTTCCCCTTCCEEECTTCCBCHHHH--HHHHTTCHHHHHHHH
T ss_pred cCcc-cchhhccCCCCCEEEcCCCCCcCcch--HHHHHhCCCCcEEec
Confidence 5554 3444555555555555555554 111 223344444444444
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=8.4e-25 Score=205.02 Aligned_cols=39 Identities=23% Similarity=0.157 Sum_probs=22.2
Q ss_pred CCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCccc
Q 035547 40 AQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLNEI 78 (482)
Q Consensus 40 ~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l 78 (482)
++|++|++++|.+++..+.. ..+++|++|++++|+++.+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 67 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc
Confidence 35666666666665555533 5566666666666655543
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=7.3e-25 Score=205.42 Aligned_cols=212 Identities=19% Similarity=0.123 Sum_probs=151.5
Q ss_pred ccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchh-hhcccCCCCCEEeC
Q 035547 171 TYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVL-KSLANCNMLQVLDL 249 (482)
Q Consensus 171 l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L 249 (482)
++.|++++|.+.+..+..+..+++|++|++++|++.+..+..+.... +|++|++++|.++.++ ..+..+++|++|++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS--HLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCT--TCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCc--CCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 44444444444444455667777777777777777655555555555 7777777777776665 45777788888888
Q ss_pred CCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcce-
Q 035547 250 RNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFT- 328 (482)
Q Consensus 250 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~- 328 (482)
++|.+.+..+..+..+++|++|++++|.+++.. .+..+..+++|++|++++|.+++..+..+. .+..++.+.
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------~l~~L~~l~l 180 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYCTDLR------VLHQMPLLNL 180 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECCSSCCCEECGGGGH------HHHTCTTCCE
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceec-CchhhccCCCCCEEECCCCCCCcCCHHHhh------hhhhccccce
Confidence 888887766666777888888888888877532 145677788888888888888776554442 123344444
Q ss_pred EEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCccccCCCC
Q 035547 329 SIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPTS 392 (482)
Q Consensus 329 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~ 392 (482)
+|++++|.+++..+..+.. .+|++|+|++|++++..+..|..+++|+.|++++|++.+.+|..
T Consensus 181 ~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 181 SLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp EEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred eeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 8999999998776665544 48999999999999666667889999999999999999877654
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=4.9e-24 Score=200.90 Aligned_cols=205 Identities=21% Similarity=0.189 Sum_probs=140.5
Q ss_pred CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCC
Q 035547 116 LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYF 195 (482)
Q Consensus 116 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L 195 (482)
+++++++++++++++.++ .+|..+. .. ++.|++++|+++. ..+..|..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~--l~~L~L~~N~l~~-----------------------~~~~~~~~l~~L 57 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KD--TTILHLSENLLYT-----------------------FSLATLMPYTRL 57 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TT--CCEEECTTSCCSE-----------------------EEGGGGTTCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CC--CCEEEcCCCcCCc-----------------------cCHHHhhcCCCC
Confidence 445556666666666665 4444332 22 5555555555544 346677888888
Q ss_pred CEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEccc
Q 035547 196 QVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRS 275 (482)
Q Consensus 196 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 275 (482)
+.|++++|.+.+ ++.. ... ++|++|++++|.++.+|..+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 58 ~~L~L~~n~l~~-~~~~-~~l--~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~ 133 (290)
T 1p9a_G 58 TQLNLDRAELTK-LQVD-GTL--PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133 (290)
T ss_dssp CEEECTTSCCCE-EECC-SCC--TTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT
T ss_pred CEEECCCCccCc-ccCC-CCC--CcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC
Confidence 888888888874 3322 223 377777777777777777777777777777777777776666777777777777777
Q ss_pred CccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeee
Q 035547 276 NNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPN 355 (482)
Q Consensus 276 N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 355 (482)
|++++.. +..|..+++|+.|+|++|.++ +..+..|..+++|+.|+
T Consensus 134 N~l~~~~--~~~~~~l~~L~~L~L~~N~l~---------------------------------~l~~~~~~~l~~L~~L~ 178 (290)
T 1p9a_G 134 NELKTLP--PGLLTPTPKLEKLSLANNNLT---------------------------------ELPAGLLNGLENLDTLL 178 (290)
T ss_dssp SCCCCCC--TTTTTTCTTCCEEECTTSCCS---------------------------------CCCTTTTTTCTTCCEEE
T ss_pred CCCCccC--hhhcccccCCCEEECCCCcCC---------------------------------ccCHHHhcCcCCCCEEE
Confidence 7776554 445555566666555555554 34455667788899999
Q ss_pred ccCCcCcccccccccCCCCCCEEeCCCCCcccc
Q 035547 356 MSHNALKGSIPSSFGNLKQIESLDLLMNNLMGK 388 (482)
Q Consensus 356 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 388 (482)
|++|+++ .+|..+..+++|+.+++++|++.+.
T Consensus 179 L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 9999998 7778888888899999999988754
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=7.5e-24 Score=197.80 Aligned_cols=204 Identities=17% Similarity=0.163 Sum_probs=139.2
Q ss_pred ccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEcc
Q 035547 148 LYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLR 227 (482)
Q Consensus 148 L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~ 227 (482)
.+.++++++.++.+|..++ ++++.|++++|++.+..+..+.... +|++|+++
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--------------------------~~l~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~ 69 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--------------------------ADTKKLDLQSNKLSSLPSKAFHRLT--KLRLLYLN 69 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--------------------------TTCSEEECCSSCCSCCCTTSSSSCT--TCCEEECC
T ss_pred CCEEEccCCCCCccCCCCC--------------------------CCCCEEECcCCCCCeeCHHHhcCCC--CCCEEECC
Confidence 6778888887777654322 3455555555555533333444433 55556665
Q ss_pred CCCCCchhhh-cccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcc
Q 035547 228 RNNLGVVLKS-LANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSG 306 (482)
Q Consensus 228 ~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 306 (482)
+|.++.++.. |..+++|++|++++|.+++..+..|..+++|++|++++|.+++.. +..+..+++|++|+|++|.+++
T Consensus 70 ~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~ 147 (270)
T 2o6q_A 70 DNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP--PRVFDSLTKLTYLSLGYNELQS 147 (270)
T ss_dssp SSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCC
T ss_pred CCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeC--HHHhCcCcCCCEEECCCCcCCc
Confidence 5555555543 355666777777777766655566666677777777777766654 4556667777777777777665
Q ss_pred cCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCcc
Q 035547 307 RLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLM 386 (482)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 386 (482)
..+..+ ..+++|++|++++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.
T Consensus 148 ~~~~~~---------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 148 LPKGVF---------DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCTTTT---------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCHhHc---------cCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 444222 45677777777777777777777889999999999999999666667889999999999999998
Q ss_pred ccCC
Q 035547 387 GKIP 390 (482)
Q Consensus 387 ~~~p 390 (482)
+.++
T Consensus 219 c~c~ 222 (270)
T 2o6q_A 219 CTCN 222 (270)
T ss_dssp CSSS
T ss_pred CCCc
Confidence 7655
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=2.7e-23 Score=193.97 Aligned_cols=201 Identities=18% Similarity=0.151 Sum_probs=126.2
Q ss_pred ccEEEccCCCCCCCCC-CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCC-CCCCccEEEcc
Q 035547 100 FSKLRLASSKPWVIPI-LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYH-ISGRTYSFSTI 177 (482)
Q Consensus 100 L~~L~l~~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~-~~~~l~~L~l~ 177 (482)
.+.++++++.++.+|. +. +++++|++++|++++..+..|..++. |++|++++|+++.++...+ .+++|+.|+++
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTK--LRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTT--CCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCC--CCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 3344444444444443 21 34455555555554333334444444 5555555555554444433 34444444444
Q ss_pred CCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhh-cccCCCCCEEeCCCcccCC
Q 035547 178 NKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKS-LANCNMLQVLDLRNNHISD 256 (482)
Q Consensus 178 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~ 256 (482)
+|.+.+..+..+..+++|++|++++|++.+..+..+.... +|++|++++|.++.+|.. +..+++|++|++++|.+++
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT--KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT--TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc--CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 4444444455667777788888888877755555555555 778888888877777653 6777888888888888887
Q ss_pred CcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccC
Q 035547 257 NFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRL 308 (482)
Q Consensus 257 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 308 (482)
..+..|..+++|++|++++|.+++.. +..+..+++|+.|++++|.+....
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVP--EGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCBCCSS
T ss_pred eChhHhccCCCcCEEECCCCcCCcCC--HHHhccccCCCEEEecCCCeeCCC
Confidence 77777888888888888888887655 456777888888888888776543
No 75
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=8.4e-25 Score=213.23 Aligned_cols=124 Identities=18% Similarity=0.109 Sum_probs=72.8
Q ss_pred hhhhhcCC-CCCEEeCCCCcccccCChhhhhc--Cc-CccceEEccCCCCCc-----hhhhcccC-CCCCEEeCCCcccC
Q 035547 186 PEYICKAT-YFQVLDLSNNNLSGSIPACLITK--SS-TTLGVLNLRRNNLGV-----VLKSLANC-NMLQVLDLRNNHIS 255 (482)
Q Consensus 186 ~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~--~~-~~L~~L~l~~n~l~~-----~~~~~~~l-~~L~~L~Ls~N~l~ 255 (482)
+..+...+ +|++|++++|++.+..+..+... .. ++|++|++++|.++. ++..+... ++|++|++++|.++
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 34445554 78888888887775555444322 11 267777777777755 56666553 47777777777777
Q ss_pred CCcCh----hhhcCCCCcEEEcccCccccccC-----CCCCCCCCCCCCEEecCCCCCcccCC
Q 035547 256 DNFPC----WLRNAFSLQVLVFRSNNFSERIS-----CPRNNVSWPLLKIVDLASNKFSGRLS 309 (482)
Q Consensus 256 ~~~~~----~~~~l~~L~~L~L~~N~i~~~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~ 309 (482)
+..+. .+..+++|++|++++|.+.+..+ ....+..+++|++||+++|.+.+..+
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 64432 23455677777777776432210 12344555666666666666654433
No 76
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1.2e-24 Score=212.00 Aligned_cols=44 Identities=20% Similarity=0.244 Sum_probs=25.1
Q ss_pred CCCCC-CCCEEEcccCcccccCChhhhhc-----CCCCccEEeCCCCcccCC
Q 035547 116 LKNQS-QLSFFYISNNQISGEIPNWIWEV-----GGVNLYFLNLSQNLLVSL 161 (482)
Q Consensus 116 ~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~~~L~~L~L~~n~i~~~ 161 (482)
+..++ +|++|+|++|.+++..+..+..+ .. |++|++++|+++..
T Consensus 46 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~--L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN--VTSLNLSGNFLSYK 95 (362)
T ss_dssp HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT--CCEEECCSSCGGGS
T ss_pred HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC--ccEEECcCCcCChH
Confidence 44455 56666666666665555555543 33 66666666655543
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=3.7e-24 Score=200.10 Aligned_cols=224 Identities=16% Similarity=0.097 Sum_probs=125.3
Q ss_pred EEEccCCCCCCCCCCCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcc
Q 035547 102 KLRLASSKPWVIPILKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSL 181 (482)
Q Consensus 102 ~L~l~~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~ 181 (482)
.+++..+.+..+.....+++|+.|++++|.++ .++ .+..++. |++|++++|.++.+
T Consensus 23 ~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~--L~~L~l~~n~l~~~-------------------- 78 (272)
T 3rfs_A 23 KANLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQ-GIQYLPN--VRYLALGGNKLHDI-------------------- 78 (272)
T ss_dssp HHHHTCSCTTSEECHHHHTTCCEEECTTSCCC-CCT-TGGGCTT--CCEEECTTSCCCCC--------------------
T ss_pred HHHhcCcccccccccccccceeeeeeCCCCcc-ccc-ccccCCC--CcEEECCCCCCCCc--------------------
Confidence 33444444333333444455555555555554 222 2444444 55555555554443
Q ss_pred cccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhh-hcccCCCCCEEeCCCcccCCCcCh
Q 035547 182 IGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLK-SLANCNMLQVLDLRNNHISDNFPC 260 (482)
Q Consensus 182 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~ 260 (482)
..+..+++|++|++++|.+.+..+..+.... +|++|++++|.++.++. .+..+++|++|++++|.+++..+.
T Consensus 79 -----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 151 (272)
T 3rfs_A 79 -----SALKELTNLTYLILTGNQLQSLPNGVFDKLT--NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG 151 (272)
T ss_dssp -----GGGTTCTTCCEEECTTSCCCCCCTTTTTTCT--TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred -----hhhcCCCCCCEEECCCCccCccChhHhcCCc--CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH
Confidence 2344555555555555555533333333333 55555555555554443 245556666666666666665555
Q ss_pred hhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCccccc
Q 035547 261 WLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGP 340 (482)
Q Consensus 261 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 340 (482)
.|..+++|++|++++|.+++.. +..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+.+.
T Consensus 152 ~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~---------~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 152 VFDKLTNLTELDLSYNQLQSLP--EGVFDKLTQLKDLRLYQNQLKSVPDGVF---------DRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp TTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCSCCCTTTT---------TTCTTCCEEECCSSCBCCC
T ss_pred HhccCccCCEEECCCCCcCccC--HHHhcCCccCCEEECCCCcCCccCHHHH---------hCCcCCCEEEccCCCcccc
Confidence 5566666666666666666544 3445566666666666666665544222 4566666777777766543
Q ss_pred ChHhhhcCCCCCeeeccCCcCcccccccccCCCC
Q 035547 341 MPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQ 374 (482)
Q Consensus 341 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 374 (482)
+++|+.++++.|.++|.+|.+++.++.
T Consensus 221 -------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 221 -------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp -------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred -------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 446788888888888888888776654
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=7.6e-23 Score=192.73 Aligned_cols=200 Identities=19% Similarity=0.229 Sum_probs=110.9
Q ss_pred CCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCcccccCCCCcccccC
Q 035547 12 IGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLNEIHLLSNNQFENQF 90 (482)
Q Consensus 12 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~ 90 (482)
+..+++++++++++++++. +|..+. ++++.|++++|.+++..+.. ..+++|++|+|++|.|+.++.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------- 72 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---------- 72 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC----------
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC----------
Confidence 5567777777777777776 444443 57777777777777666555 677777777777777765520
Q ss_pred CCCCcCCccccEEEccCCCCCCCCC-CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCC
Q 035547 91 PEISNMSSSFSKLRLASSKPWVIPI-LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISG 169 (482)
Q Consensus 91 p~~~~~~~~L~~L~l~~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~ 169 (482)
. ...++|+.|++++|.+..+|. +.++++|++|++++|++++..+..|..++. |++|++++|+++.++
T Consensus 73 --~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~--L~~L~L~~N~l~~~~------- 140 (290)
T 1p9a_G 73 --D-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE--LQELYLKGNELKTLP------- 140 (290)
T ss_dssp --C-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT--CCEEECTTSCCCCCC-------
T ss_pred --C-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCC--CCEEECCCCCCCccC-------
Confidence 0 111455555555555555555 555555555555555555333344444444 444444444444432
Q ss_pred CccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhh-hcccCCCCCEEe
Q 035547 170 RTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLK-SLANCNMLQVLD 248 (482)
Q Consensus 170 ~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~ 248 (482)
+..|..+++|+.|++++| .++.+|. .+..+++|+.|+
T Consensus 141 ----------------~~~~~~l~~L~~L~L~~N--------------------------~l~~l~~~~~~~l~~L~~L~ 178 (290)
T 1p9a_G 141 ----------------PGLLTPTPKLEKLSLANN--------------------------NLTELPAGLLNGLENLDTLL 178 (290)
T ss_dssp ----------------TTTTTTCTTCCEEECTTS--------------------------CCSCCCTTTTTTCTTCCEEE
T ss_pred ----------------hhhcccccCCCEEECCCC--------------------------cCCccCHHHhcCcCCCCEEE
Confidence 223334444444444444 4444443 234455556666
Q ss_pred CCCcccCCCcChhhhcCCCCcEEEcccCccc
Q 035547 249 LRNNHISDNFPCWLRNAFSLQVLVFRSNNFS 279 (482)
Q Consensus 249 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 279 (482)
+++|.++. +|..+..+.+|+.+++++|.+.
T Consensus 179 L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 179 LQENSLYT-IPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCSSCCCC-CCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCCcCCc-cChhhcccccCCeEEeCCCCcc
Confidence 66665554 3444445556666666666654
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=4.7e-23 Score=188.75 Aligned_cols=185 Identities=13% Similarity=0.093 Sum_probs=137.6
Q ss_pred ecCCcCCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCc-ccCCCCCC-CCCCCCCEEECcC-CCCcccccCC
Q 035547 6 GTLPDSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNH-FSGPIPSL-HKSRNLNYLDLSS-NNLNEIHLLS 82 (482)
Q Consensus 6 g~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~l~~L~~L~Ls~-N~i~~l~~l~ 82 (482)
..+|. +. ++|++|++++|+++++.+..|+++++|++|++++|+ ++++++.. ..+++|++|++++ |+++.++
T Consensus 24 ~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~--- 97 (239)
T 2xwt_C 24 QRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID--- 97 (239)
T ss_dssp SSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC---
T ss_pred cccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC---
Confidence 45676 43 389999999999998777789999999999999997 88777766 7889999999998 8888663
Q ss_pred CCcccccCCCCCcCCccccEEEccCCCCCCCCCCCCCCCCC---EEEcccC-cccccCChhhhhcCCCCcc-EEeCCCCc
Q 035547 83 NNQFENQFPEISNMSSSFSKLRLASSKPWVIPILKNQSQLS---FFYISNN-QISGEIPNWIWEVGGVNLY-FLNLSQNL 157 (482)
Q Consensus 83 ~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~l~~~~~l~~L~---~L~Ls~n-~l~~~~~~~~~~l~~~~L~-~L~L~~n~ 157 (482)
+..+...++|+.|++++|.+..+|.+..+++|+ +|++++| .+++..+..|..+.. |+ +|++++|+
T Consensus 98 --------~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~--L~~~L~l~~n~ 167 (239)
T 2xwt_C 98 --------PDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCN--ETLTLKLYNNG 167 (239)
T ss_dssp --------TTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBS--SEEEEECCSCC
T ss_pred --------HHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhc--ceeEEEcCCCC
Confidence 334433478888888888888888777777777 8888888 887666666777777 88 88888888
Q ss_pred ccCCCCCCCCCCCccEEEccCCc-ccccChhhhhcC-CCCCEEeCCCCccc
Q 035547 158 LVSLQEPYHISGRTYSFSTINKS-LIGFIPEYICKA-TYFQVLDLSNNNLS 206 (482)
Q Consensus 158 i~~~~~~~~~~~~l~~L~l~~n~-~~~~~~~~~~~l-~~L~~L~l~~n~l~ 206 (482)
++.++...+..++++.|++++|. +.+..+..|..+ ++|+.|++++|++.
T Consensus 168 l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 168 FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp CCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 88776655533566666666663 555555555555 55666666665555
No 80
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.90 E-value=1.5e-24 Score=225.76 Aligned_cols=272 Identities=11% Similarity=-0.059 Sum_probs=186.9
Q ss_pred ccccEEEccCCCCC----CCCC-CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCC-C-CCCCCC
Q 035547 98 SSFSKLRLASSKPW----VIPI-LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQE-P-YHISGR 170 (482)
Q Consensus 98 ~~L~~L~l~~n~l~----~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~-~-~~~~~~ 170 (482)
++|++|+++..... ..+. +..+++|+.|+++++... .+|..+..++. |++|++++|.++.... . +..+++
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~--L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQ--IRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGG--CCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCC--CcEEecCCCcCCHHHHHHHHHhCcC
Confidence 66777777643221 2222 677788888888876443 67777777777 9999999998654322 1 237899
Q ss_pred ccEEEccCCcccccChhhhhcCCCCCEEeCCC-----------CcccccC-ChhhhhcCcCccceEEccCCCCCch-hhh
Q 035547 171 TYSFSTINKSLIGFIPEYICKATYFQVLDLSN-----------NNLSGSI-PACLITKSSTTLGVLNLRRNNLGVV-LKS 237 (482)
Q Consensus 171 l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-----------n~l~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~-~~~ 237 (482)
|+.|++.++...+.++..+..+++|++|++++ +.+++.. +......+ +|++|+++.+.++.. +..
T Consensus 320 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~L~~L~l~~~~l~~~~~~~ 397 (592)
T 3ogk_B 320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ--ELEYMAVYVSDITNESLES 397 (592)
T ss_dssp CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT--TCSEEEEEESCCCHHHHHH
T ss_pred CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc--cCeEEEeecCCccHHHHHH
Confidence 99999994333333555567789999999993 5555332 22222344 999999988888542 344
Q ss_pred ccc-CCCCCEEeCC----CcccCCC-----cChhhhcCCCCcEEEcccCc--cccccCCCCCCCCCCCCCEEecCCCCCc
Q 035547 238 LAN-CNMLQVLDLR----NNHISDN-----FPCWLRNAFSLQVLVFRSNN--FSERISCPRNNVSWPLLKIVDLASNKFS 305 (482)
Q Consensus 238 ~~~-l~~L~~L~Ls----~N~l~~~-----~~~~~~~l~~L~~L~L~~N~--i~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 305 (482)
+.. +++|+.|+++ .|.+++. .+..+.++++|++|+++++. +++... ......+++|++|++++|.++
T Consensus 398 l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~-~~~~~~~~~L~~L~L~~n~l~ 476 (592)
T 3ogk_B 398 IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL-SYIGQYSPNVRWMLLGYVGES 476 (592)
T ss_dssp HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH-HHHHHSCTTCCEEEECSCCSS
T ss_pred HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH-HHHHHhCccceEeeccCCCCC
Confidence 444 8999999996 7788764 33447789999999997543 554321 112235889999999999987
Q ss_pred ccCCHHHHHHHHHHHhhcCCcceEEeCCCCccccc-ChHhhhcCCCCCeeeccCCcCccccccc-ccCCCCCCEEeCCCC
Q 035547 306 GRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGP-MPEEMGRFKSLYAPNMSHNALKGSIPSS-FGNLKQIESLDLLMN 383 (482)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~l~~N 383 (482)
+.... .....+++|++|++++|.+++. ++.....+++|++|+|++|+++..-... ...++.+....+..+
T Consensus 477 ~~~~~--------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 477 DEGLM--------EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHH--------HHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHH--------HHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 53222 2347789999999999998755 3445578999999999999988542222 345676665555443
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.9e-22 Score=188.48 Aligned_cols=187 Identities=17% Similarity=0.132 Sum_probs=113.5
Q ss_pred hhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCC
Q 035547 189 ICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSL 268 (482)
Q Consensus 189 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 268 (482)
...+++|+.|++++|.+. .++ .+.... +|++|++++|.++.++ .+..+++|++|++++|.+++..+..|..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~~~-~l~~l~--~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-SVQ-GIQYLP--NVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-CCT-TGGGCT--TCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccccceeeeeeCCCCcc-ccc-ccccCC--CCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 344556666666666654 232 233333 6666666666665553 55566666666666666666555556666666
Q ss_pred cEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcC
Q 035547 269 QVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRF 348 (482)
Q Consensus 269 ~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 348 (482)
++|++++|.+++.. +..+..+++|++|++++|.+++..+..+ ..+++|++|++++|++++..+..++.+
T Consensus 112 ~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~---------~~l~~L~~L~l~~n~l~~~~~~~~~~l 180 (272)
T 3rfs_A 112 KELVLVENQLQSLP--DGVFDKLTNLTYLNLAHNQLQSLPKGVF---------DKLTNLTELDLSYNQLQSLPEGVFDKL 180 (272)
T ss_dssp CEEECTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTT---------TTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CEEECCCCcCCccC--HHHhccCCCCCEEECCCCccCccCHHHh---------ccCccCCEEECCCCCcCccCHHHhcCC
Confidence 66666666666544 3445666666666666666665444222 455666666666666666555556666
Q ss_pred CCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCccccCCC
Q 035547 349 KSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPT 391 (482)
Q Consensus 349 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 391 (482)
++|++|++++|++++..+..+..+++|+.|++++|++.+.+|.
T Consensus 181 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 181 TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 6667777776666655555566666667777776666665553
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=6.7e-23 Score=189.14 Aligned_cols=212 Identities=15% Similarity=0.136 Sum_probs=169.4
Q ss_pred CCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhh-hcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEE
Q 035547 193 TYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLK-SLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVL 271 (482)
Q Consensus 193 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 271 (482)
...+.++++++.+. .+|..+. . .++.|++++|.++.++. .+..+++|++|++++|.+++..+..|..+++|++|
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~--~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--A--DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--T--TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCeEEecCCCCcc-ccCCCCC--C--CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence 45678999999998 7776654 2 89999999999977765 68899999999999999999888889999999999
Q ss_pred EcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCC
Q 035547 272 VFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSL 351 (482)
Q Consensus 272 ~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 351 (482)
++++|.+++.. +..+..+++|++|+|++|.+++..+..+ ..+++|++|+|++|.+++..+..|+.+++|
T Consensus 89 ~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~---------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 157 (251)
T 3m19_A 89 GLANNQLASLP--LGVFDHLTQLDKLYLGGNQLKSLPSGVF---------DRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157 (251)
T ss_dssp ECTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTT---------TTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ECCCCcccccC--hhHhcccCCCCEEEcCCCcCCCcChhHh---------ccCCcccEEECcCCcCCccCHHHcCcCcCC
Confidence 99999999776 5778899999999999999997666433 578999999999999998888889999999
Q ss_pred CeeeccCCcCcccccccccCCCCCCEEeCCCCCccccCCCCcccC-cCC-----CCcccCCCCCCCCCCCCCCCCC
Q 035547 352 YAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQ-SFL-----PTSYEGNKGLYIPPLTNDIQTH 421 (482)
Q Consensus 352 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~~-----~~~~~~n~~~~~~~~~~~c~~~ 421 (482)
+.|+|++|++++..+..|..+++|+.|++++|++.+.......+. ++. ..+..++. .|..+....|..+
T Consensus 158 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~~~ 232 (251)
T 3m19_A 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQN-LHESPDGVTCSDG 232 (251)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcc-cccCCCcCccCCC
Confidence 999999999997777789999999999999999987633321111 111 11222332 4566666777665
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=1.2e-23 Score=203.06 Aligned_cols=250 Identities=14% Similarity=0.139 Sum_probs=188.6
Q ss_pred CCCEEEcccCcccccCChhhhhc--CCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCccccc-ChhhhhcCCCCCE
Q 035547 121 QLSFFYISNNQISGEIPNWIWEV--GGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGF-IPEYICKATYFQV 197 (482)
Q Consensus 121 ~L~~L~Ls~n~l~~~~~~~~~~l--~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~-~~~~~~~l~~L~~ 197 (482)
.++.+++++|.+. +..+..+ .. ++.|++++|.++.....++.+++++.|++++|.+.+. ++..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~--l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQG--VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTT--CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC---HHHHHhhhhcc--ceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 4788888888876 4556666 55 8999999999888877777888999999999988765 7788888999999
Q ss_pred EeCCCCcccccCChhhhhcCcCccceEEccCC-CCC--chhhhcccCCCCCEEeCCCc-ccCCC-cChhhhcCC-CCcEE
Q 035547 198 LDLSNNNLSGSIPACLITKSSTTLGVLNLRRN-NLG--VVLKSLANCNMLQVLDLRNN-HISDN-FPCWLRNAF-SLQVL 271 (482)
Q Consensus 198 L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~--~~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~-~L~~L 271 (482)
|++++|.+.+..+..+.... +|++|++++| .++ .++..+..+++|++|++++| .+++. .+..+..++ +|++|
T Consensus 123 L~L~~~~l~~~~~~~l~~~~--~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNS--NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCT--TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred EeCcCcccCHHHHHHHhcCC--CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 99999998877777777655 9999999999 676 37777888999999999999 88764 466788888 99999
Q ss_pred EcccCc--cc-cccCCCCCCCCCCCCCEEecCCCC-CcccCCHHHHHHHHHHHhhcCCcceEEeCCCCc-ccccChHhhh
Q 035547 272 VFRSNN--FS-ERISCPRNNVSWPLLKIVDLASNK-FSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNN-FEGPMPEEMG 346 (482)
Q Consensus 272 ~L~~N~--i~-~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~ 346 (482)
++++|. ++ +.. +..+..+++|++|++++|. +++..+..+ ..+++|++|++++|. +.......++
T Consensus 201 ~l~~~~~~~~~~~l--~~~~~~~~~L~~L~l~~~~~l~~~~~~~l---------~~l~~L~~L~l~~~~~~~~~~~~~l~ 269 (336)
T 2ast_B 201 NLSGYRKNLQKSDL--STLVRRCPNLVHLDLSDSVMLKNDCFQEF---------FQLNYLQHLSLSRCYDIIPETLLELG 269 (336)
T ss_dssp ECCSCGGGSCHHHH--HHHHHHCTTCSEEECTTCTTCCGGGGGGG---------GGCTTCCEEECTTCTTCCGGGGGGGG
T ss_pred EeCCCcccCCHHHH--HHHHhhCCCCCEEeCCCCCcCCHHHHHHH---------hCCCCCCEeeCCCCCCCCHHHHHHHh
Confidence 999984 44 222 3345678889999999988 665544332 567888899998885 3222223577
Q ss_pred cCCCCCeeeccCCcCcccccccccCC-CCCCEEeCCCCCccccCCCC
Q 035547 347 RFKSLYAPNMSHNALKGSIPSSFGNL-KQIESLDLLMNNLMGKIPTS 392 (482)
Q Consensus 347 ~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~p~~ 392 (482)
.+++|+.|++++| ++.. .+..+ ..+..|++++|++++..|..
T Consensus 270 ~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 270 EIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp GCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred cCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCc
Confidence 8889999999988 4421 23333 23666678888888777654
No 84
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.89 E-value=5.6e-25 Score=229.01 Aligned_cols=350 Identities=11% Similarity=0.092 Sum_probs=215.4
Q ss_pred CCCCCCEEeCCCCcCCCCCchhcc-CCCCCCEEeCCCC-cccCC-CCCC-CCCCCCCEEECcCCCCcccccCCCCccccc
Q 035547 14 TLENLTRVDLRSYNFTRPIPTSMA-NLAQLFHMDFSSN-HFSGP-IPSL-HKSRNLNYLDLSSNNLNEIHLLSNNQFENQ 89 (482)
Q Consensus 14 ~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~-~~~~-~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~ 89 (482)
.+++|++|+|++|.+++..+..+. .+++|++|++++| .++.. .+.. ..+++|++|+|++|.++.. ... .
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~---~~~----~ 175 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV---SGH----W 175 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECC---CGG----G
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCc---chH----H
Confidence 467788888888777765555564 5778888888877 34321 2222 4677888888888765532 111 1
Q ss_pred CCCCCcCCccccEEEccCCCCCCCC-----C-CCCCCCCCEEEcccC-cccccCChhhhhcCCCCccEEeCCCCcc----
Q 035547 90 FPEISNMSSSFSKLRLASSKPWVIP-----I-LKNQSQLSFFYISNN-QISGEIPNWIWEVGGVNLYFLNLSQNLL---- 158 (482)
Q Consensus 90 ~p~~~~~~~~L~~L~l~~n~l~~l~-----~-~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~~~L~~L~L~~n~i---- 158 (482)
++......++|+.|++++|. ..++ . ...+++|++|++++| .+. .++..+..++. |+.|+++.+..
T Consensus 176 l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~--L~~L~l~~~~~~~~~ 251 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQ--LEELGTGGYTAEVRP 251 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTT--CSEEECSBCCCCCCH
T ss_pred HHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCc--ceEcccccccCccch
Confidence 12222223788888888886 3222 2 345688888888887 443 36666666666 88887654421
Q ss_pred ----------------------cCCCC-CCC----CCCCccEEEccCCcccccC-hhhhhcCCCCCEEeCCCCccccc-C
Q 035547 159 ----------------------VSLQE-PYH----ISGRTYSFSTINKSLIGFI-PEYICKATYFQVLDLSNNNLSGS-I 209 (482)
Q Consensus 159 ----------------------~~~~~-~~~----~~~~l~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~-~ 209 (482)
..... .+. .+++|+.|++++|.+.+.. ...+..+++|+.|++++| +... +
T Consensus 252 ~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l 330 (594)
T 2p1m_B 252 DVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGL 330 (594)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHH
T ss_pred hhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHH
Confidence 11100 011 3577888888888765432 233457788888888877 3321 2
Q ss_pred ChhhhhcCcCccceEEccC---------CCCCc--hhhhcccCCCCCEEeCCCcccCCCcChhhh-cCCCCcEEEcc--c
Q 035547 210 PACLITKSSTTLGVLNLRR---------NNLGV--VLKSLANCNMLQVLDLRNNHISDNFPCWLR-NAFSLQVLVFR--S 275 (482)
Q Consensus 210 ~~~~~~~~~~~L~~L~l~~---------n~l~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~--~ 275 (482)
+....... +|++|++.+ +.++. +......+++|+.|+++.|.+++.....+. .+++|+.|+++ +
T Consensus 331 ~~l~~~~~--~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~ 408 (594)
T 2p1m_B 331 EVLASTCK--DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE 408 (594)
T ss_dssp HHHHHHCT--TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred HHHHHhCC--CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeeccc
Confidence 22222233 788888833 34432 122223478888888888887765444454 57888888888 3
Q ss_pred ----CccccccC---CCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhh-hc
Q 035547 276 ----NNFSERIS---CPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEM-GR 347 (482)
Q Consensus 276 ----N~i~~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~ 347 (482)
+.+++... ....+..+++|+.|++++ .+++..... ....+++|++|++++|.+++.....+ ..
T Consensus 409 ~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~--------l~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 479 (594)
T 2p1m_B 409 PKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY--------IGTYAKKMEMLSVAFAGDSDLGMHHVLSG 479 (594)
T ss_dssp TTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH--------HHHHCTTCCEEEEESCCSSHHHHHHHHHH
T ss_pred CCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH--------HHHhchhccEeeccCCCCcHHHHHHHHhc
Confidence 44442110 011245678888888876 444322211 12347889999999998876655555 66
Q ss_pred CCCCCeeeccCCcCcccccc-cccCCCCCCEEeCCCCCcc
Q 035547 348 FKSLYAPNMSHNALKGSIPS-SFGNLKQIESLDLLMNNLM 386 (482)
Q Consensus 348 l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~ 386 (482)
+++|+.|+|++|.+++.... ....+++|+.|++++|+++
T Consensus 480 ~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 480 CDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred CCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 88999999999988644333 3455788999999998774
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=3.8e-23 Score=203.42 Aligned_cols=257 Identities=15% Similarity=0.165 Sum_probs=167.1
Q ss_pred CCCCC-CCCCCCCCEEEcccCcccccCChh----hhhcCCCCccEEeCCCCcccCCCCCCC-CCCCccEEEccCCccccc
Q 035547 111 WVIPI-LKNQSQLSFFYISNNQISGEIPNW----IWEVGGVNLYFLNLSQNLLVSLQEPYH-ISGRTYSFSTINKSLIGF 184 (482)
Q Consensus 111 ~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~~~L~~L~L~~n~i~~~~~~~~-~~~~l~~L~l~~n~~~~~ 184 (482)
..++. +..+++|++|+|++|.+++..+.. +..++. |++|++++|.+..+.+.++ .. ..
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~--L~~L~Ls~~~~~~l~~~~~~~~--------------~~ 85 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD--LEIAEFSDIFTGRVKDEIPEAL--------------RL 85 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTT--CCEEECCSCCTTSCGGGSHHHH--------------HH
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCC--ccEEeCcccccCccccchhHHH--------------HH
Confidence 35555 777888899999998887654433 445555 8888888876665432111 00 00
Q ss_pred ChhhhhcCCCCCEEeCCCCcccc----cCChhhhhcCcCccceEEccCCCCCc-----hhhhcccC---------CCCCE
Q 035547 185 IPEYICKATYFQVLDLSNNNLSG----SIPACLITKSSTTLGVLNLRRNNLGV-----VLKSLANC---------NMLQV 246 (482)
Q Consensus 185 ~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~l---------~~L~~ 246 (482)
+...+..+++|++|++++|.+.+ .+|..+.... +|++|++++|.++. ++..+..+ ++|++
T Consensus 86 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~--~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~ 163 (386)
T 2ca6_A 86 LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT--PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRS 163 (386)
T ss_dssp HHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCT--TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred HHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCC--CCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcE
Confidence 11233567777777777777765 3555555555 77777777777742 23334444 78888
Q ss_pred EeCCCcccCC-CcC---hhhhcCCCCcEEEcccCccccc--cC-CCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHH
Q 035547 247 LDLRNNHISD-NFP---CWLRNAFSLQVLVFRSNNFSER--IS-CPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMII 319 (482)
Q Consensus 247 L~Ls~N~l~~-~~~---~~~~~l~~L~~L~L~~N~i~~~--~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 319 (482)
|++++|.++. ..+ ..+..+++|++|++++|.++.. .. .+..+..+++|++|+|++|.++... ......
T Consensus 164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-----~~~l~~ 238 (386)
T 2ca6_A 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-----SSALAI 238 (386)
T ss_dssp EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-----HHHHHH
T ss_pred EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-----HHHHHH
Confidence 8888888762 233 3566777888888888877621 00 0235677788888888888775211 011113
Q ss_pred HhhcCCcceEEeCCCCccccc----ChHhhhc--CCCCCeeeccCCcCcc----cccccc-cCCCCCCEEeCCCCCcccc
Q 035547 320 QLKIPNIFTSIDCSSNNFEGP----MPEEMGR--FKSLYAPNMSHNALKG----SIPSSF-GNLKQIESLDLLMNNLMGK 388 (482)
Q Consensus 320 ~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~--l~~L~~L~Ls~N~l~~----~~~~~~-~~l~~L~~L~l~~N~l~~~ 388 (482)
.+..+++|++|+|++|.+++. ++..+.. +++|+.|+|++|.+++ .+|..+ .++++|++|++++|++++.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 446778888888888888765 4555533 7888888888888886 377666 5578888888888888865
Q ss_pred CC
Q 035547 389 IP 390 (482)
Q Consensus 389 ~p 390 (482)
.+
T Consensus 319 ~~ 320 (386)
T 2ca6_A 319 DD 320 (386)
T ss_dssp SH
T ss_pred hh
Confidence 43
No 86
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.89 E-value=2e-25 Score=232.37 Aligned_cols=362 Identities=11% Similarity=0.057 Sum_probs=236.4
Q ss_pred CcceecCCcCCC-CCCCCCEEeCCCC-cCCCC-CchhccCCCCCCEEeCCCCcccCCCCC----C-CCCCCCCEEECcCC
Q 035547 2 TSFLGTLPDSIG-TLENLTRVDLRSY-NFTRP-IPTSMANLAQLFHMDFSSNHFSGPIPS----L-HKSRNLNYLDLSSN 73 (482)
Q Consensus 2 n~~~g~~p~~~~-~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~----~-~~l~~L~~L~Ls~N 73 (482)
|.+.+..+..+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+. . ..+++|++|++++|
T Consensus 115 ~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~ 194 (594)
T 2p1m_B 115 MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCL 194 (594)
T ss_dssp CBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTC
T ss_pred cEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEeccc
Confidence 345555555554 6899999999999 56543 344555899999999999998764432 2 47889999999998
Q ss_pred CCcccccCCCCcccccCCCCCcCCccccEEEccCC-CCCCCCC-CCCCCCCCEEEcccCc--------------------
Q 035547 74 NLNEIHLLSNNQFENQFPEISNMSSSFSKLRLASS-KPWVIPI-LKNQSQLSFFYISNNQ-------------------- 131 (482)
Q Consensus 74 ~i~~l~~l~~n~l~~~~p~~~~~~~~L~~L~l~~n-~l~~l~~-~~~l~~L~~L~Ls~n~-------------------- 131 (482)
. ..+ +...+. ......++|+.|++++| .+..++. +..+++|++|+++.+.
T Consensus 195 ~-~~~---~~~~l~----~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~ 266 (594)
T 2p1m_B 195 A-SEV---SFSALE----RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKE 266 (594)
T ss_dssp C-SCC---CHHHHH----HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTT
T ss_pred C-CcC---CHHHHH----HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCC
Confidence 6 211 000111 11111277888888877 2334444 5556666666644331
Q ss_pred ------cc----ccCChhhhhcCCCCccEEeCCCCcccCCC--CCCCCCCCccEEEccCCccccc-ChhhhhcCCCCCEE
Q 035547 132 ------IS----GEIPNWIWEVGGVNLYFLNLSQNLLVSLQ--EPYHISGRTYSFSTINKSLIGF-IPEYICKATYFQVL 198 (482)
Q Consensus 132 ------l~----~~~~~~~~~l~~~~L~~L~L~~n~i~~~~--~~~~~~~~l~~L~l~~n~~~~~-~~~~~~~l~~L~~L 198 (482)
+. ..++..+..++. |++|++++|.++... ..+..+++|+.|++++| +.+. ++.....+++|+.|
T Consensus 267 L~~Ls~~~~~~~~~l~~~~~~~~~--L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L 343 (594)
T 2p1m_B 267 LRCLSGFWDAVPAYLPAVYSVCSR--LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLREL 343 (594)
T ss_dssp CCEEECCBTCCGGGGGGGHHHHTT--CCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEE
T ss_pred cccccCCcccchhhHHHHHHhhCC--CCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEE
Confidence 11 133444445666 999999999966422 11226789999999988 4432 33344568999999
Q ss_pred eCCC---------CcccccCChhhhhcCcCccceEEccCCCCCchh-hhc-ccCCCCCEEeCC--C----cccCCCc---
Q 035547 199 DLSN---------NNLSGSIPACLITKSSTTLGVLNLRRNNLGVVL-KSL-ANCNMLQVLDLR--N----NHISDNF--- 258 (482)
Q Consensus 199 ~l~~---------n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~-~~l~~L~~L~Ls--~----N~l~~~~--- 258 (482)
++++ +.+++.....+.. .+++|++|.+..+.++... ..+ ..+++|+.|+++ + +.+++..
T Consensus 344 ~L~~~~~~g~~~~~~l~~~~l~~l~~-~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~ 422 (594)
T 2p1m_B 344 RVFPSEPFVMEPNVALTEQGLVSVSM-GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI 422 (594)
T ss_dssp EEECSCTTCSSCSSCCCHHHHHHHHH-HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHH
T ss_pred EEecCcccccccCCCCCHHHHHHHHH-hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhh
Confidence 9843 4554332222322 1239999999989885432 233 358999999999 4 5666422
Q ss_pred --ChhhhcCCCCcEEEcccCccccccCCCCCCC-CCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCC
Q 035547 259 --PCWLRNAFSLQVLVFRSNNFSERISCPRNNV-SWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSN 335 (482)
Q Consensus 259 --~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 335 (482)
+..+..+++|++|++++ .+++.. ...+. .+++|++|+|++|.+++..... ....+++|++|++++|
T Consensus 423 ~~~~l~~~~~~L~~L~L~~-~l~~~~--~~~l~~~~~~L~~L~L~~~~i~~~~~~~--------l~~~~~~L~~L~L~~n 491 (594)
T 2p1m_B 423 GFGAIVEHCKDLRRLSLSG-LLTDKV--FEYIGTYAKKMEMLSVAFAGDSDLGMHH--------VLSGCDSLRKLEIRDC 491 (594)
T ss_dssp HHHHHHHHCTTCCEEECCS-SCCHHH--HHHHHHHCTTCCEEEEESCCSSHHHHHH--------HHHHCTTCCEEEEESC
T ss_pred HHHHHHhhCCCccEEeecC-cccHHH--HHHHHHhchhccEeeccCCCCcHHHHHH--------HHhcCCCcCEEECcCC
Confidence 22367889999999987 565432 12233 3889999999999986533322 2256899999999999
Q ss_pred cccccChH-hhhcCCCCCeeeccCCcCcccccccc-cCCCCCCEEeCCCCCcc
Q 035547 336 NFEGPMPE-EMGRFKSLYAPNMSHNALKGSIPSSF-GNLKQIESLDLLMNNLM 386 (482)
Q Consensus 336 ~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~l~~N~l~ 386 (482)
.+++.... ....+++|+.|++++|+++......+ ..++.++...+..+.-.
T Consensus 492 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 492 PFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp SCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred CCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence 99755444 34568999999999999864433334 56788877666655433
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=5.1e-24 Score=209.62 Aligned_cols=239 Identities=18% Similarity=0.204 Sum_probs=177.4
Q ss_pred CccccEEEccCCCCCC-----CCC-CCCCCCCCEEEcccCc---ccccCChhh-------hhcCCCCccEEeCCCCcccC
Q 035547 97 SSSFSKLRLASSKPWV-----IPI-LKNQSQLSFFYISNNQ---ISGEIPNWI-------WEVGGVNLYFLNLSQNLLVS 160 (482)
Q Consensus 97 ~~~L~~L~l~~n~l~~-----l~~-~~~l~~L~~L~Ls~n~---l~~~~~~~~-------~~l~~~~L~~L~L~~n~i~~ 160 (482)
.++|+.|++++|.+.. ++. +..+++|++|+|++|. +++.+|..+ ..++. |++|++++|.++.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~--L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK--LHTVRLSDNAFGP 108 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT--CCEEECCSCCCCT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc--ccEEECCCCcCCH
Confidence 3889999999999883 444 7889999999999964 445666665 34444 7788887777765
Q ss_pred CCCCCCCCCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhh----c---------CcCccceEEcc
Q 035547 161 LQEPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLIT----K---------SSTTLGVLNLR 227 (482)
Q Consensus 161 ~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----~---------~~~~L~~L~l~ 227 (482)
... ..++..+..+++|++|++++|.+.+..+..+.. . + +|++|+++
T Consensus 109 ~~~-------------------~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~--~L~~L~L~ 167 (386)
T 2ca6_A 109 TAQ-------------------EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP--PLRSIICG 167 (386)
T ss_dssp TTH-------------------HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCC--CCCEEECC
T ss_pred HHH-------------------HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCC--CCcEEECC
Confidence 210 125667888889999999999886443333332 2 4 89999999
Q ss_pred CCCCC--chh---hhcccCCCCCEEeCCCcccCC-----CcChhhhcCCCCcEEEcccCccc----cccCCCCCCCCCCC
Q 035547 228 RNNLG--VVL---KSLANCNMLQVLDLRNNHISD-----NFPCWLRNAFSLQVLVFRSNNFS----ERISCPRNNVSWPL 293 (482)
Q Consensus 228 ~n~l~--~~~---~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~L~~N~i~----~~~~~~~~~~~l~~ 293 (482)
+|.++ .++ ..+..+++|++|++++|.++. ..+..+..+++|++|+|++|.++ ... +..+..+++
T Consensus 168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l--~~~l~~~~~ 245 (386)
T 2ca6_A 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL--AIALKSWPN 245 (386)
T ss_dssp SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH--HHHGGGCTT
T ss_pred CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH--HHHHccCCC
Confidence 99985 455 467788899999999998873 23337788899999999999985 323 346778899
Q ss_pred CCEEecCCCCCcccCCHHHHHHHHHHHhhc--CCcceEEeCCCCcccc----cChHhh-hcCCCCCeeeccCCcCcccc
Q 035547 294 LKIVDLASNKFSGRLSQKWLLTMMIIQLKI--PNIFTSIDCSSNNFEG----PMPEEM-GRFKSLYAPNMSHNALKGSI 365 (482)
Q Consensus 294 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~--~~~L~~L~Ls~n~l~~----~~~~~~-~~l~~L~~L~Ls~N~l~~~~ 365 (482)
|++|+|++|.+++.....+. ..+.. +++|++|+|++|.+++ .+|..+ .++++|+.|++++|++++..
T Consensus 246 L~~L~L~~n~i~~~~~~~l~-----~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVV-----DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHH-----HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred cCEEECCCCCCchhhHHHHH-----HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 99999999998754222111 23333 8899999999999997 477776 66899999999999998655
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=4.2e-22 Score=189.44 Aligned_cols=150 Identities=21% Similarity=0.246 Sum_probs=82.4
Q ss_pred hhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCC
Q 035547 189 ICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSL 268 (482)
Q Consensus 189 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 268 (482)
+..+++|+.|++++|.+.+ ++ .+.... +|++|++++|.++.++. +..+++|++|++++|.+++..+ +..+++|
T Consensus 81 ~~~l~~L~~L~L~~n~l~~-~~-~~~~l~--~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L 153 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKN-VS-AIAGLQ--SIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNL 153 (308)
T ss_dssp GTTCCSCCEEECCSCCCSC-CG-GGTTCT--TCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTC
T ss_pred HccCCCCCEEEccCCcCCC-ch-hhcCCC--CCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCc
Confidence 4555555555555555542 22 233333 55555555555555543 5556666666666666655332 5566666
Q ss_pred cEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcC
Q 035547 269 QVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRF 348 (482)
Q Consensus 269 ~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 348 (482)
++|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++.. .+..+
T Consensus 154 ~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~-----------l~~l~~L~~L~L~~N~l~~~~--~l~~l 216 (308)
T 1h6u_A 154 QYLSIGNAQVSDLTP----LANLSKLTTLKADDNKISDISP-----------LASLPNLIEVHLKNNQISDVS--PLANT 216 (308)
T ss_dssp CEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG-----------GGGCTTCCEEECTTSCCCBCG--GGTTC
T ss_pred cEEEccCCcCCCChh----hcCCCCCCEEECCCCccCcChh-----------hcCCCCCCEEEccCCccCccc--cccCC
Confidence 666666666654321 5556666666666666554322 134555555555555555433 25556
Q ss_pred CCCCeeeccCCcCc
Q 035547 349 KSLYAPNMSHNALK 362 (482)
Q Consensus 349 ~~L~~L~Ls~N~l~ 362 (482)
++|+.|++++|+++
T Consensus 217 ~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 217 SNLFIVTLTNQTIT 230 (308)
T ss_dssp TTCCEEEEEEEEEE
T ss_pred CCCCEEEccCCeee
Confidence 66666666666665
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=1.9e-22 Score=184.70 Aligned_cols=195 Identities=15% Similarity=0.164 Sum_probs=142.2
Q ss_pred CccEEEccCCcccccChhhhhcCCCCCEEeCCCCc-ccccCChhhhhcCcCccceEEccC-CCCCchhh-hcccCCCCCE
Q 035547 170 RTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNN-LSGSIPACLITKSSTTLGVLNLRR-NNLGVVLK-SLANCNMLQV 246 (482)
Q Consensus 170 ~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~-~~~~l~~L~~ 246 (482)
+++.|++++|.+.+..+..|..+++|++|++++|+ +.+..+..+.... +|++|++++ |.++.++. .|..+++|++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~--~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS--KVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCT--TCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCc--CCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 44444444455444455667777888888888886 6644444555555 788888887 78877764 6777888888
Q ss_pred EeCCCcccCCCcChhhhcCCCCc---EEEcccC-ccccccCCCCCCCCCCCCC-EEecCCCCCcccCCHHHHHHHHHHHh
Q 035547 247 LDLRNNHISDNFPCWLRNAFSLQ---VLVFRSN-NFSERISCPRNNVSWPLLK-IVDLASNKFSGRLSQKWLLTMMIIQL 321 (482)
Q Consensus 247 L~Ls~N~l~~~~~~~~~~l~~L~---~L~L~~N-~i~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~~~~~~~~ 321 (482)
|++++|.+++ .|. |..+++|+ +|++++| .+++.. +..|..+++|+ +|++++|.++...+..|
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~--~~~~~~l~~L~~~L~l~~n~l~~i~~~~~--------- 176 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIP--VNAFQGLCNETLTLKLYNNGFTSVQGYAF--------- 176 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEEC--TTTTTTTBSSEEEEECCSCCCCEECTTTT---------
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcC--cccccchhcceeEEEcCCCCCcccCHhhc---------
Confidence 8888888877 454 77777777 8888888 787765 56678888888 88888888874333222
Q ss_pred hcCCcceEEeCCCCc-ccccChHhhhcC-CCCCeeeccCCcCcccccccccCCCCCCEEeCCCC
Q 035547 322 KIPNIFTSIDCSSNN-FEGPMPEEMGRF-KSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMN 383 (482)
Q Consensus 322 ~~~~~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 383 (482)
.. ++|++|++++|. +++..+..|.++ ++|+.|++++|+++ .+|.. .+++|+.|+++++
T Consensus 177 ~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 177 NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 33 688888998884 887777888888 89999999999998 45544 5678888888765
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=4.6e-23 Score=196.51 Aligned_cols=160 Identities=14% Similarity=0.066 Sum_probs=84.9
Q ss_pred CCCCEEEcccCcccccCChhh--hhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCCCE
Q 035547 120 SQLSFFYISNNQISGEIPNWI--WEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYFQV 197 (482)
Q Consensus 120 ~~L~~L~Ls~n~l~~~~~~~~--~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~ 197 (482)
++|++|++++|.+++..|..+ ..+.. |++|++++|+++.....+. ...+..+++|++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~--L~~L~Ls~n~i~~~~~~~~-------------------~~~~~~~~~L~~ 149 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLA--LSSLRLRNVSWATGRSWLA-------------------ELQQWLKPGLKV 149 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBC--CSSCEEESCCCSSTTSSHH-------------------HHHTTBCSCCCE
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCC--CCEEEeecccccchhhhhH-------------------HHHhhhccCCCE
Confidence 446666666666655555554 44444 5555555555554211000 022334555555
Q ss_pred EeCCCCcccccCChhhhhcCcCccceEEccCCCCCc---hhh--hcccCCCCCEEeCCCcccCCCcCh----hhhcCCCC
Q 035547 198 LDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGV---VLK--SLANCNMLQVLDLRNNHISDNFPC----WLRNAFSL 268 (482)
Q Consensus 198 L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~---~~~--~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L 268 (482)
|++++|++.+..+..+.... +|++|++++|.+.. ++. .+..+++|++|++++|.+++ .+. .+..+++|
T Consensus 150 L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L 226 (310)
T 4glp_A 150 LSIAQAHSPAFSCEQVRAFP--ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQP 226 (310)
T ss_dssp EEEECCSSCCCCTTSCCCCT--TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCC
T ss_pred EEeeCCCcchhhHHHhccCC--CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCC
Confidence 55555555544444444444 56666666665432 222 22456677777777777654 222 24566777
Q ss_pred cEEEcccCccccccCCCCCCCCC---CCCCEEecCCCCCc
Q 035547 269 QVLVFRSNNFSERISCPRNNVSW---PLLKIVDLASNKFS 305 (482)
Q Consensus 269 ~~L~L~~N~i~~~~~~~~~~~~l---~~L~~L~Ls~n~l~ 305 (482)
++|+|++|.+++.. +..+..+ ++|++|+|++|.++
T Consensus 227 ~~L~Ls~N~l~~~~--p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 227 HSLDLSHNSLRATV--NPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp SSEECTTSCCCCCC--CSCCSSCCCCTTCCCEECCSSCCC
T ss_pred CEEECCCCCCCccc--hhhHHhccCcCcCCEEECCCCCCC
Confidence 77777777776654 2223333 56666666666665
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.6e-21 Score=185.53 Aligned_cols=168 Identities=20% Similarity=0.214 Sum_probs=67.9
Q ss_pred cccEEEccCCCCCCCCCCCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccC
Q 035547 99 SFSKLRLASSKPWVIPILKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTIN 178 (482)
Q Consensus 99 ~L~~L~l~~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~ 178 (482)
+|+.|++++|.+..++.+..+++|++|++++|.+++ ++. +..++. |++|++++|+++.++ .+..+++|+.|++++
T Consensus 42 ~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~--L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD-LAP-LKNLTK--ITELELSGNPLKNVS-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG-GTTCCS--CCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred CcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCC-Chh-HccCCC--CCEEEccCCcCCCch-hhcCCCCCCEEECCC
Confidence 344444444444444444444555555555555542 222 444444 555555555544431 111222222222222
Q ss_pred CcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCc
Q 035547 179 KSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNF 258 (482)
Q Consensus 179 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 258 (482)
|.+.+. + .+..+++|+.|++++|.+.+ ++. +.... +|++|++++|.++.++. +..+++|+.|++++|.+++..
T Consensus 117 n~l~~~-~-~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~--~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 117 TQITDV-T-PLAGLSNLQVLYLDLNQITN-ISP-LAGLT--NLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp SCCCCC-G-GGTTCTTCCEEECCSSCCCC-CGG-GGGCT--TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCCc-h-hhcCCCCCCEEECCCCccCc-Ccc-ccCCC--CccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcCh
Confidence 222221 1 14444444444444444442 211 22222 44444444444444433 444444444444444444322
Q ss_pred ChhhhcCCCCcEEEcccCcccc
Q 035547 259 PCWLRNAFSLQVLVFRSNNFSE 280 (482)
Q Consensus 259 ~~~~~~l~~L~~L~L~~N~i~~ 280 (482)
+ +..+++|++|++++|.+++
T Consensus 190 ~--l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 190 P--LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp G--GGGCTTCCEEECTTSCCCB
T ss_pred h--hcCCCCCCEEEccCCccCc
Confidence 2 3444444444444444443
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=3.3e-22 Score=190.51 Aligned_cols=207 Identities=19% Similarity=0.172 Sum_probs=154.1
Q ss_pred cCCCCCEEeCCCCcccccCChhh--hhcCcCccceEEccCCCCCch----h-hhcccCCCCCEEeCCCcccCCCcChhhh
Q 035547 191 KATYFQVLDLSNNNLSGSIPACL--ITKSSTTLGVLNLRRNNLGVV----L-KSLANCNMLQVLDLRNNHISDNFPCWLR 263 (482)
Q Consensus 191 ~l~~L~~L~l~~n~l~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~----~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 263 (482)
.+++|++|++++|.+.+..|..+ .... +|++|++++|.++.. + ..+..+++|++|++++|.+++..+..|.
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~--~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 166 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGL--ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR 166 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCB--CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCC--CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence 34668888888888887777766 4444 888888888888642 1 2445688899999999999888888888
Q ss_pred cCCCCcEEEcccCccccc--cCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccC
Q 035547 264 NAFSLQVLVFRSNNFSER--ISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPM 341 (482)
Q Consensus 264 ~l~~L~~L~L~~N~i~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 341 (482)
.+++|++|+|++|++.+. .+....+..+++|++|+|++|.++...+ .. ...+..+++|++|+|++|.+++..
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~-----~~l~~~l~~L~~L~Ls~N~l~~~~ 240 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG-VC-----AALAAAGVQPHSLDLSHNSLRATV 240 (310)
T ss_dssp CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH-HH-----HHHHHHTCCCSSEECTTSCCCCCC
T ss_pred cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH-HH-----HHHHhcCCCCCEEECCCCCCCccc
Confidence 899999999999987653 1113345678899999999998863221 10 012356788999999999998877
Q ss_pred hHhhhcC---CCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCccccCCCCcccCcCCCCcccCCCCC
Q 035547 342 PEEMGRF---KSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPTSTQLQSFLPTSYEGNKGL 409 (482)
Q Consensus 342 ~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~ 409 (482)
|..+..+ ++|++|+|++|+++ .+|..+. ++|+.|++++|++++. |....+..+..+.+.+|++.
T Consensus 241 p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 241 NPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTS
T ss_pred hhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCC
Confidence 7777666 68999999999998 6677664 7899999999999864 43445667777788888764
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1e-22 Score=196.41 Aligned_cols=233 Identities=15% Similarity=0.117 Sum_probs=160.5
Q ss_pred ccccEEEccCCCCCCCCC-CCCCCCCCEEEcccCccccc-CChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEE
Q 035547 98 SSFSKLRLASSKPWVIPI-LKNQSQLSFFYISNNQISGE-IPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFS 175 (482)
Q Consensus 98 ~~L~~L~l~~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~ 175 (482)
+.++.|++++|.+...+. +..+++|++|++++|.+++. ++..+..++. |++|++++|.+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~--L~~L~L~~~~l----------------- 130 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK--LQNLSLEGLRL----------------- 130 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCC--CSEEECTTCBC-----------------
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCC--CCEEeCcCccc-----------------
Confidence 455666666666654433 55566666666666665543 4444555544 55555555544
Q ss_pred ccCCcccccChhhhhcCCCCCEEeCCCC-ccccc-CChhhhhcCcCccceEEccCC-CCCc--hhhhcccCC-CCCEEeC
Q 035547 176 TINKSLIGFIPEYICKATYFQVLDLSNN-NLSGS-IPACLITKSSTTLGVLNLRRN-NLGV--VLKSLANCN-MLQVLDL 249 (482)
Q Consensus 176 l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~~~~L~~L~l~~n-~l~~--~~~~~~~l~-~L~~L~L 249 (482)
.+..+..+..+++|++|++++| .+++. ++..+.... +|++|++++| .++. ++..+..++ +|++|++
T Consensus 131 ------~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~--~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 131 ------SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS--RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp ------CHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT--TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred ------CHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC--CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 4445677888889999999998 56642 555566665 8999999999 8864 677788888 9999999
Q ss_pred CCc--ccC-CCcChhhhcCCCCcEEEcccCc-cccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCC
Q 035547 250 RNN--HIS-DNFPCWLRNAFSLQVLVFRSNN-FSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPN 325 (482)
Q Consensus 250 s~N--~l~-~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~ 325 (482)
++| .++ +..+..+..+++|++|++++|. +++.. ...+..+++|++|++++|. +..+..+ ..+..++
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~--~~~l~~l~~L~~L~l~~~~--~~~~~~~------~~l~~~~ 272 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC--FQEFFQLNYLQHLSLSRCY--DIIPETL------LELGEIP 272 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG--GGGGGGCTTCCEEECTTCT--TCCGGGG------GGGGGCT
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHH--HHHHhCCCCCCEeeCCCCC--CCCHHHH------HHHhcCC
Confidence 998 454 3356677888999999999998 66544 3467788999999999985 2222211 1235688
Q ss_pred cceEEeCCCCcccccChHhhhcC-CCCCeeeccCCcCcccccccccC
Q 035547 326 IFTSIDCSSNNFEGPMPEEMGRF-KSLYAPNMSHNALKGSIPSSFGN 371 (482)
Q Consensus 326 ~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~ 371 (482)
+|++|++++| ++.. .+..+ .+++.|++++|++++..|..+..
T Consensus 273 ~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 273 TLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcccc
Confidence 9999999998 4433 33333 34777889999999888877764
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=7.9e-21 Score=175.23 Aligned_cols=179 Identities=17% Similarity=0.142 Sum_probs=132.2
Q ss_pred ccccEEEccCCCCCCCCC-CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEc
Q 035547 98 SSFSKLRLASSKPWVIPI-LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFST 176 (482)
Q Consensus 98 ~~L~~L~l~~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l 176 (482)
...+.++++++.++.+|. +. ++++.|++++|.+++..+..|..++. |++|++++|+++.++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~-------------- 75 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTK--LTWLNLDYNQLQTLS-------------- 75 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTT--CCEEECTTSCCCCCC--------------
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCccc--CCEEECCCCcCCccC--------------
Confidence 345667777777777766 43 46777777777777666666776666 777777777776653
Q ss_pred cCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhh-cccCCCCCEEeCCCcccC
Q 035547 177 INKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKS-LANCNMLQVLDLRNNHIS 255 (482)
Q Consensus 177 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~ 255 (482)
+..|..+++|++|++++|++.+..+..+.... +|++|++++|.++.++.. +..+++|++|++++|.++
T Consensus 76 ---------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 76 ---------AGVFDDLTELGTLGLANNQLASLPLGVFDHLT--QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp ---------TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT--TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ---------HhHhccCCcCCEEECCCCcccccChhHhcccC--CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC
Confidence 44566667777777777777644444555554 777777777777776653 577888899999999888
Q ss_pred CCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCccc
Q 035547 256 DNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGR 307 (482)
Q Consensus 256 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 307 (482)
+..+..|..+++|++|+|++|.+++.. +..+..+++|++|++++|.+.+.
T Consensus 145 ~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 145 SIPAGAFDKLTNLQTLSLSTNQLQSVP--HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSCCBCTT
T ss_pred ccCHHHcCcCcCCCEEECCCCcCCccC--HHHHhCCCCCCEEEeeCCceeCC
Confidence 877778888899999999999988765 56788889999999999998876
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=4.8e-21 Score=185.65 Aligned_cols=199 Identities=16% Similarity=0.064 Sum_probs=113.5
Q ss_pred CEEECcCCCCcccccCCCCcccccCCCCCcCCccccEEEccCCCCCCCCC--CCCCCCCCEEEcccCcccccCC-hhhhh
Q 035547 66 NYLDLSSNNLNEIHLLSNNQFENQFPEISNMSSSFSKLRLASSKPWVIPI--LKNQSQLSFFYISNNQISGEIP-NWIWE 142 (482)
Q Consensus 66 ~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~~~ 142 (482)
++++-++++++++| ..+ .+++++|++++|+++.+|. |.++++|++|+|++|++.+.+| .+|.+
T Consensus 12 ~~v~C~~~~Lt~iP------------~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~ 77 (350)
T 4ay9_X 12 RVFLCQESKVTEIP------------SDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN 77 (350)
T ss_dssp TEEEEESTTCCSCC------------TTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCS
T ss_pred CEEEecCCCCCccC------------cCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhc
Confidence 46667777776553 111 1567777777777777765 7777777777777777755454 34555
Q ss_pred cCCCCccE-EeCCCCcccCCCCCCC-CCCCccEEEccCCcccccChhhhhcCCCCCEEeCCC-CcccccCChhhhhcCcC
Q 035547 143 VGGVNLYF-LNLSQNLLVSLQEPYH-ISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSN-NNLSGSIPACLITKSST 219 (482)
Q Consensus 143 l~~~~L~~-L~L~~n~i~~~~~~~~-~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~ 219 (482)
+.. ++. +.+++|+++.+++..+ .+++|+.|++++|.+....+..+....++..+++.+ +++....+..+.... .
T Consensus 78 L~~--l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~-~ 154 (350)
T 4ay9_X 78 LPK--LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS-F 154 (350)
T ss_dssp CTT--CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB-S
T ss_pred chh--hhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc-h
Confidence 554 443 5556677777655554 556666666666666555544455555555565544 344322222222221 1
Q ss_pred ccceEEccCCCCCchhhhcccCCCCCEEeCCC-cccCCCcChhhhcCCCCcEEEcccCccccc
Q 035547 220 TLGVLNLRRNNLGVVLKSLANCNMLQVLDLRN-NHISDNFPCWLRNAFSLQVLVFRSNNFSER 281 (482)
Q Consensus 220 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 281 (482)
.++.|++++|.++.++.......+|+++++++ |.++.+.++.|..+++|++|++++|+|+..
T Consensus 155 ~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217 (350)
T ss_dssp SCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC
T ss_pred hhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc
Confidence 45556666666666655444445566666543 445544444555666666666666665544
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=1.7e-20 Score=181.84 Aligned_cols=219 Identities=16% Similarity=0.128 Sum_probs=95.2
Q ss_pred CCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCC-CCCC-CCCCCCCE-EECcCCCCcccccCCCCcccccCCC
Q 035547 16 ENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGP-IPSL-HKSRNLNY-LDLSSNNLNEIHLLSNNQFENQFPE 92 (482)
Q Consensus 16 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~-~~l~~L~~-L~Ls~N~i~~l~~l~~n~l~~~~p~ 92 (482)
+++++|+|++|+|+.+.+.+|+++++|++|+|++|++.+. ++.. .+++++++ +.+++|+++.++ |+
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-----------~~ 98 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-----------PE 98 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-----------TT
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC-----------ch
Confidence 3455555555555543334455555555555555554332 2222 34444443 333344444332 33
Q ss_pred CCcCCccccEEEccCCCCCCCCC--CCCCCCCCEEEccc-CcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCC
Q 035547 93 ISNMSSSFSKLRLASSKPWVIPI--LKNQSQLSFFYISN-NQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISG 169 (482)
Q Consensus 93 ~~~~~~~L~~L~l~~n~l~~l~~--~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~ 169 (482)
.+..+++|+.|++++|.+..+|. +....++..|++.+ +++....+..|..+.. .++.|++++|+|+.++...+...
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~-~l~~L~L~~N~i~~i~~~~f~~~ 177 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF-ESVILWLNKNGIQEIHNSAFNGT 177 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBS-SCEEEECCSSCCCEECTTSSTTE
T ss_pred hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcch-hhhhhccccccccCCChhhcccc
Confidence 33333445555555555544443 33333444444433 3333222233333221 14444555555544444444333
Q ss_pred CccEEEccCCcccccChhhhhcCCCCCEEeCCC-CcccccCCh-hhhhcCcCccceEEccCCCCCchhhhcccCCCCCEE
Q 035547 170 RTYSFSTINKSLIGFIPEYICKATYFQVLDLSN-NNLSGSIPA-CLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVL 247 (482)
Q Consensus 170 ~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L 247 (482)
+|+.+++++ |.+. .+|. .+.... +|++|++++|+++.+|.. .+.+|+.|
T Consensus 178 ------------------------~L~~l~l~~~n~l~-~i~~~~f~~l~--~L~~LdLs~N~l~~lp~~--~~~~L~~L 228 (350)
T 4ay9_X 178 ------------------------QLDELNLSDNNNLE-ELPNDVFHGAS--GPVILDISRTRIHSLPSY--GLENLKKL 228 (350)
T ss_dssp ------------------------EEEEEECTTCTTCC-CCCTTTTTTEE--CCSEEECTTSCCCCCCSS--SCTTCCEE
T ss_pred ------------------------chhHHhhccCCccc-CCCHHHhccCc--ccchhhcCCCCcCccChh--hhccchHh
Confidence 445555543 3333 3332 233333 555555555555555432 13344444
Q ss_pred eCCCcccCCCcChhhhcCCCCcEEEcccC
Q 035547 248 DLRNNHISDNFPCWLRNAFSLQVLVFRSN 276 (482)
Q Consensus 248 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 276 (482)
.+.++.--...| .+..+++|+.+++.++
T Consensus 229 ~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 229 RARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp ECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred hhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 443322212233 2455556666665543
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=3.5e-21 Score=173.67 Aligned_cols=156 Identities=15% Similarity=0.144 Sum_probs=117.2
Q ss_pred ceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcC-hhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecC
Q 035547 222 GVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFP-CWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLA 300 (482)
Q Consensus 222 ~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls 300 (482)
+.+++++|.++.+|..+ .+.+++|++++|.+++..+ ..|..+++|++|++++|.+++.. +..|..+++|++|+|+
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~--~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE--EGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC--HHHhCCCCCCCEEECC
Confidence 45666666666666544 2345677777777766533 44667777777777777777665 4567777777777777
Q ss_pred CCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeC
Q 035547 301 SNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDL 380 (482)
Q Consensus 301 ~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 380 (482)
+|.+++..+..+ ..+++|++|+|++|.+++..|..|..+++|+.|+|++|++++..|..|..+++|+.|++
T Consensus 90 ~N~l~~~~~~~~---------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 90 SNRLENVQHKMF---------KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp SSCCCCCCGGGG---------TTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCccCccCHhHh---------cCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence 777776655333 56778888888888888888888999999999999999999888999999999999999
Q ss_pred CCCCccccCC
Q 035547 381 LMNNLMGKIP 390 (482)
Q Consensus 381 ~~N~l~~~~p 390 (482)
++|++.+.++
T Consensus 161 ~~N~l~c~c~ 170 (220)
T 2v70_A 161 LANPFNCNCY 170 (220)
T ss_dssp CSCCEECSGG
T ss_pred cCcCCcCCCc
Confidence 9999996554
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=4.2e-21 Score=173.17 Aligned_cols=153 Identities=16% Similarity=0.169 Sum_probs=99.2
Q ss_pred eEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCC
Q 035547 223 VLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASN 302 (482)
Q Consensus 223 ~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n 302 (482)
.++++++.++.+|..+. +++++|++++|.+++..+..|..+++|++|+|++|.+++.. +..|..+++|++|+|++|
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~--~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA--PDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC--TTTTTTCSSCCEEECCSS
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC--HHHhhCCcCCCEEECCCC
Confidence 44444555544544332 45555555555555544445555555555555555555544 345555556666666666
Q ss_pred CCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCC
Q 035547 303 KFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLM 382 (482)
Q Consensus 303 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 382 (482)
.++...+.. +..+++|++|+|++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++
T Consensus 91 ~l~~l~~~~---------f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 91 KITELPKSL---------FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CCCCCCTTT---------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred cCCccCHhH---------ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 555433321 14556666666777777767778888899999999999999977777788999999999999
Q ss_pred CCcccc
Q 035547 383 NNLMGK 388 (482)
Q Consensus 383 N~l~~~ 388 (482)
|++.+.
T Consensus 162 N~~~c~ 167 (220)
T 2v9t_B 162 NPFICD 167 (220)
T ss_dssp SCEECS
T ss_pred CCcCCC
Confidence 998853
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=2.4e-20 Score=190.29 Aligned_cols=187 Identities=22% Similarity=0.304 Sum_probs=109.0
Q ss_pred CCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccccCCCCcccccCCCCCcCCccccEEEccCCCCCCCCCCCCCC
Q 035547 41 QLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEISNMSSSFSKLRLASSKPWVIPILKNQS 120 (482)
Q Consensus 41 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~l~~~~~l~ 120 (482)
+|+.|++++|.++++++.. .++|++|+|++|+|+.+ | ...++|+.|++++|.++.+|.+.+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~i------------p---~~l~~L~~L~Ls~N~l~~ip~l~~-- 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISL------------P---ELPASLEYLDACDNRLSTLPELPA-- 120 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCC------------C---CCCTTCCEEECCSSCCSCCCCCCT--
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCccc------------c---cccCCCCEEEccCCCCCCcchhhc--
Confidence 6777777777776644433 25677777777766644 2 111566666666666666665333
Q ss_pred CCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCCCEEeC
Q 035547 121 QLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLDL 200 (482)
Q Consensus 121 ~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 200 (482)
+|++|++++|++++ +|. .++. |+.|++++|+|+.++. .+++|+.|++++|.+++ +|. +. ++|+.|++
T Consensus 121 ~L~~L~Ls~N~l~~-lp~---~l~~--L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~L 187 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE---LPAL--LEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDV 187 (571)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTT--CCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEEC
T ss_pred CCCEEECCCCcCCC-CCC---cCcc--ccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEEC
Confidence 67777777777664 444 2334 6777777776666543 33455555555555544 333 33 56666666
Q ss_pred CCCcccccCChhhhhcCcCcc-------ceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcC
Q 035547 201 SNNNLSGSIPACLITKSSTTL-------GVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNA 265 (482)
Q Consensus 201 ~~n~l~~~~~~~~~~~~~~~L-------~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 265 (482)
++|+++ .+|. +.. +| +.|++++|.++.+|..+..+++|+.|++++|.+++..|..+..+
T Consensus 188 s~N~L~-~lp~-~~~----~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 188 STNLLE-SLPA-VPV----RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CSSCCS-SCCC-CC------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred cCCCCC-chhh-HHH----hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 666665 5554 221 44 66666666666666666666666666666666666555555543
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=3.2e-20 Score=165.99 Aligned_cols=151 Identities=17% Similarity=0.085 Sum_probs=74.2
Q ss_pred cEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccC
Q 035547 149 YFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRR 228 (482)
Q Consensus 149 ~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~ 228 (482)
+.++.+++.++.++..+ .++++.|++++|.+.+..+..+..+++|++|++++|++.+..+..+.... +|++|++++
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT--SLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT--TCCEEECCS
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCC--CcCEEECCC
Confidence 34444444444443221 12333333333333333344455566666666666666533333333333 555555555
Q ss_pred CCCCchhh-hcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCc
Q 035547 229 NNLGVVLK-SLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFS 305 (482)
Q Consensus 229 n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 305 (482)
|.++.++. .+..+++|++|++++|.+++..+..|..+++|++|++++|.+++.. +..+..+++|++|++++|.+.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP--DGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSCCBC
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC--HHHhccCCCccEEEecCCCee
Confidence 55555443 2445555666666555555544444555555555555555555443 333445555555555555443
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=1.9e-19 Score=163.36 Aligned_cols=157 Identities=18% Similarity=0.188 Sum_probs=118.4
Q ss_pred ccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEec
Q 035547 220 TLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDL 299 (482)
Q Consensus 220 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~L 299 (482)
+.+.++.+++.++.+|..+. ++|++|++++|.+++..|..|..+++|++|+|++|.+.+.. +..|..+++|++|+|
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~--~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP--VGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEEC
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC--hhhcccCCCcCEEEC
Confidence 44566666666666665443 67777777777777766777777777777777777776554 455677777777777
Q ss_pred CCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEe
Q 035547 300 ASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLD 379 (482)
Q Consensus 300 s~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 379 (482)
++|.+++..+..| ..+++|++|+|++|.++ .+|..+..+++|+.|+|++|++++..+..|..+++|+.|+
T Consensus 96 s~N~l~~l~~~~~---------~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 96 GTNQLTVLPSAVF---------DRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp CSSCCCCCCTTTT---------TTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcCCccChhHh---------CcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 7777776555322 46777888888888887 5777889999999999999999976667899999999999
Q ss_pred CCCCCccccCC
Q 035547 380 LLMNNLMGKIP 390 (482)
Q Consensus 380 l~~N~l~~~~p 390 (482)
+++|++.+.++
T Consensus 166 l~~N~~~c~c~ 176 (229)
T 3e6j_A 166 LFGNPWDCECR 176 (229)
T ss_dssp CTTSCBCTTBG
T ss_pred eeCCCccCCcc
Confidence 99999997655
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=5.8e-20 Score=178.79 Aligned_cols=177 Identities=20% Similarity=0.142 Sum_probs=127.3
Q ss_pred CEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhh-cc-cCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEc
Q 035547 196 QVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKS-LA-NCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVF 273 (482)
Q Consensus 196 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 273 (482)
+.++++++.+. .+|..+.. .++.|++++|.++.++.. +. .+++|+.|++++|.+++..+..|..+++|++|+|
T Consensus 21 ~~l~c~~~~l~-~iP~~~~~----~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLPS----YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCS-SCCSSCCT----TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcC-ccCccCCC----CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 57777777776 56655432 677788888888777653 44 6778888888888887766677778888888888
Q ss_pred ccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhh---hcCCC
Q 035547 274 RSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEM---GRFKS 350 (482)
Q Consensus 274 ~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~---~~l~~ 350 (482)
++|.+++.. +..|..+++|++|+|++|.+++..+..| ..+++|++|+|++|.+++..+..| ..+++
T Consensus 96 s~N~l~~~~--~~~~~~l~~L~~L~L~~N~i~~~~~~~~---------~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~ 164 (361)
T 2xot_A 96 SSNHLHTLD--EFLFSDLQALEVLLLYNNHIVVVDRNAF---------EDMAQLQKLYLSQNQISRFPVELIKDGNKLPK 164 (361)
T ss_dssp CSSCCCEEC--TTTTTTCTTCCEEECCSSCCCEECTTTT---------TTCTTCCEEECCSSCCCSCCGGGTC----CTT
T ss_pred CCCcCCcCC--HHHhCCCcCCCEEECCCCcccEECHHHh---------CCcccCCEEECCCCcCCeeCHHHhcCcccCCc
Confidence 888887665 5567778888888888888876655433 567788888888888886555555 56788
Q ss_pred CCeeeccCCcCcccccccccCCCC--CCEEeCCCCCcccc
Q 035547 351 LYAPNMSHNALKGSIPSSFGNLKQ--IESLDLLMNNLMGK 388 (482)
Q Consensus 351 L~~L~Ls~N~l~~~~~~~~~~l~~--L~~L~l~~N~l~~~ 388 (482)
|+.|+|++|+|+...+..+..++. ++.|++++|++.+.
T Consensus 165 L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 165 LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred CCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 888888888887555556676765 37788888877743
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=5e-19 Score=166.69 Aligned_cols=123 Identities=20% Similarity=0.222 Sum_probs=73.0
Q ss_pred CCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccccCCCCcccccCCCCCcCC
Q 035547 18 LTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEISNMS 97 (482)
Q Consensus 18 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~~~~ 97 (482)
+..+.+..+.+++.. .+..+++|++|++++|.+... +....+++|++|++++|+++.++ + +...
T Consensus 26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~~~-----------~--l~~l 89 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIK-----------P--LANL 89 (291)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCG-----------G--GTTC
T ss_pred HHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCCCc-----------c--cccC
Confidence 344556666666532 355788888889888888765 44577888888888888877552 1 1111
Q ss_pred ccccEEEccCCCCCCCCCCCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccC
Q 035547 98 SSFSKLRLASSKPWVIPILKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVS 160 (482)
Q Consensus 98 ~~L~~L~l~~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~ 160 (482)
++|+.|++++|.+..++.+..+++|++|++++|++++ + ..+..++. |+.|++++|+++.
T Consensus 90 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~--L~~L~l~~n~l~~ 148 (291)
T 1h6t_A 90 KNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQ--LESLYLGNNKITD 148 (291)
T ss_dssp TTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCC-C-GGGGGCTT--CCEEECCSSCCCC
T ss_pred CCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCC-C-hhhcCCCC--CCEEEccCCcCCc
Confidence 5555555555555555555555566666666665553 2 23444444 5555555544444
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=5.3e-19 Score=180.44 Aligned_cols=55 Identities=29% Similarity=0.500 Sum_probs=26.2
Q ss_pred CCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccC
Q 035547 192 ATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHIS 255 (482)
Q Consensus 192 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~ 255 (482)
+++|+.|++++|.+++ +|. .. ++|++|++++|.++.+|. +. ++|+.|++++|.++
T Consensus 139 l~~L~~L~Ls~N~l~~-lp~---~l--~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 139 PALLEYINADNNQLTM-LPE---LP--TSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC---CC--TTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS
T ss_pred CccccEEeCCCCccCc-CCC---cC--CCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC
Confidence 4455555555555542 333 11 145555555555544444 32 45555555555554
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=1e-18 Score=156.22 Aligned_cols=173 Identities=16% Similarity=0.128 Sum_probs=127.5
Q ss_pred CEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhh-hcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcc
Q 035547 196 QVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLK-SLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFR 274 (482)
Q Consensus 196 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 274 (482)
+.++++++.+. .+|..+. . ++++|++++|.++.++. .+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 10 ~~v~c~~~~l~-~~p~~~~--~--~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGIP--A--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCS-SCCSCCC--T--TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCcc-CCCCCCC--C--CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 56778887776 5665442 2 78888888888877765 46778888888888888887666677788888888888
Q ss_pred cCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCee
Q 035547 275 SNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAP 354 (482)
Q Consensus 275 ~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 354 (482)
+|.+++.. +..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+..+..+++|++|
T Consensus 85 ~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~---------~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 85 TNQLQSLP--NGVFDKLTQLKELALNTNQLQSLPDGVF---------DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 153 (208)
T ss_dssp SSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTT---------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCcCCccC--HhHhcCccCCCEEEcCCCcCcccCHhHh---------ccCCcCCEEECCCCccceeCHHHhccCCCccEE
Confidence 88887654 4557778888888888888876555322 567778888888888876666667777888888
Q ss_pred eccCCcCcccccccccCCCCCCEEeCCCCCccccCCC
Q 035547 355 NMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIPT 391 (482)
Q Consensus 355 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 391 (482)
++++|.+.+ .+++|+.|+++.|+++|.+|.
T Consensus 154 ~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 154 WLHDNPWDC-------TCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp ECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBC
T ss_pred EecCCCeec-------CCCCHHHHHHHHHhCCceeec
Confidence 888876652 345677777777878777775
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=1.8e-18 Score=162.84 Aligned_cols=168 Identities=21% Similarity=0.242 Sum_probs=76.2
Q ss_pred ccccEEEccCCCCCCCCCCCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEcc
Q 035547 98 SSFSKLRLASSKPWVIPILKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTI 177 (482)
Q Consensus 98 ~~L~~L~l~~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~ 177 (482)
++|+.|++++|.+..++.+..+++|++|++++|++++.. . +..++. |++|++++|+++.++. +..+++|+.|+++
T Consensus 46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~-~-l~~l~~--L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK-P-LANLKN--LGWLFLDENKVKDLSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG-G-GTTCTT--CCEEECCSSCCCCGGG-GTTCTTCCEEECT
T ss_pred CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc-c-cccCCC--CCEEECCCCcCCCChh-hccCCCCCEEECC
Confidence 334444444444444444455555555555555555322 2 444444 5555555555554321 1122223333333
Q ss_pred CCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCC
Q 035547 178 NKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDN 257 (482)
Q Consensus 178 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 257 (482)
+|.+.+. ..+..+++|+.|++++|++.+ + ..+.... +|++|++++|.++.++. +..+++|++|++++|.+++.
T Consensus 121 ~n~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~--~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 121 HNGISDI--NGLVHLPQLESLYLGNNKITD-I-TVLSRLT--KLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp TSCCCCC--GGGGGCTTCCEEECCSSCCCC-C-GGGGGCT--TCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC
T ss_pred CCcCCCC--hhhcCCCCCCEEEccCCcCCc-c-hhhccCC--CCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC
Confidence 3332221 234445555555555555542 2 2333333 55555555555544443 44455555555555555442
Q ss_pred cChhhhcCCCCcEEEcccCccc
Q 035547 258 FPCWLRNAFSLQVLVFRSNNFS 279 (482)
Q Consensus 258 ~~~~~~~l~~L~~L~L~~N~i~ 279 (482)
+ .+..+++|+.|++++|++.
T Consensus 194 -~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 194 -R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp -G-GGTTCTTCSEEEEEEEEEE
T ss_pred -h-hhccCCCCCEEECcCCccc
Confidence 2 2444555555555555544
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=3.2e-18 Score=154.26 Aligned_cols=157 Identities=19% Similarity=0.187 Sum_probs=115.6
Q ss_pred EEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCC
Q 035547 150 FLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRN 229 (482)
Q Consensus 150 ~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n 229 (482)
.++++++.++.+|..++ ++++.|++++|.+.+..+..|..+++|+.|++++|++.+..|..+.... +|++|++++|
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~--~L~~L~Ls~N 90 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR--SLNSLVLYGN 90 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS--SCCEEECCSS
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc--CCCEEECCCC
Confidence 34444444444433222 3444444444444444556777888888888888888876677777766 8888888888
Q ss_pred CCCchhhh-cccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccC
Q 035547 230 NLGVVLKS-LANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRL 308 (482)
Q Consensus 230 ~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 308 (482)
.++.+|.. |..+++|++|++++|.+++..+..|..+++|++|+|++|.+++.. +..+..+++|++|+|++|.+....
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA--KGTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCEECSG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC--HHHHhCCCCCCEEEeCCCCcCCCC
Confidence 88888764 677889999999999999888888999999999999999998776 567888899999999999887654
Q ss_pred CHHH
Q 035547 309 SQKW 312 (482)
Q Consensus 309 ~~~~ 312 (482)
.-.|
T Consensus 169 ~l~~ 172 (220)
T 2v9t_B 169 HLKW 172 (220)
T ss_dssp GGHH
T ss_pred ccHH
Confidence 4333
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=2.8e-18 Score=151.97 Aligned_cols=150 Identities=14% Similarity=0.183 Sum_probs=122.3
Q ss_pred ccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEec
Q 035547 220 TLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDL 299 (482)
Q Consensus 220 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~L 299 (482)
+|++|++++|.++.+| .+..+++|++|++++|.++. +..+..+++|++|++++|.+++.. +..++.+++|++|++
T Consensus 45 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 45 SLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDK--IPNLSGLTSLTLLDI 119 (197)
T ss_dssp TCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGG--SCCCTTCTTCCEEEC
T ss_pred CccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCccc--ChhhcCCCCCCEEEe
Confidence 7888888888888887 68888899999999997765 346888899999999999998755 466888999999999
Q ss_pred CCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCc-ccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEE
Q 035547 300 ASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNN-FEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESL 378 (482)
Q Consensus 300 s~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 378 (482)
++|.+++..+..+ ..+++|++|++++|. ++ .+| .+..+++|++|++++|++++ ++ .+..+++|+.|
T Consensus 120 s~n~i~~~~~~~l---------~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L 186 (197)
T 4ezg_A 120 SHSAHDDSILTKI---------NTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQL 186 (197)
T ss_dssp CSSBCBGGGHHHH---------TTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEE
T ss_pred cCCccCcHhHHHH---------hhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEE
Confidence 9999887665433 678999999999998 66 455 68899999999999999984 44 78899999999
Q ss_pred eCCCCCccc
Q 035547 379 DLLMNNLMG 387 (482)
Q Consensus 379 ~l~~N~l~~ 387 (482)
++++|++.+
T Consensus 187 ~l~~N~i~~ 195 (197)
T 4ezg_A 187 YAFSQTIGG 195 (197)
T ss_dssp EECBC----
T ss_pred EeeCcccCC
Confidence 999998763
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=4.4e-19 Score=164.47 Aligned_cols=170 Identities=17% Similarity=0.193 Sum_probs=125.8
Q ss_pred CCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEE
Q 035547 192 ATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVL 271 (482)
Q Consensus 192 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 271 (482)
+.++..++++++.+. .++ .+.... +|++|++++|.++.++ .+..+++|++|++++|.+++..+ +..+++|++|
T Consensus 18 l~~l~~l~l~~~~i~-~~~-~~~~l~--~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVT-DLV-SQKELS--GVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTT-SEE-CHHHHT--TCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCcc-ccc-chhhcC--cCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 444566677777776 333 344555 7888888888887776 67778888888888888877544 7788888888
Q ss_pred EcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCC
Q 035547 272 VFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSL 351 (482)
Q Consensus 272 ~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 351 (482)
++++|++++..+ +.. ++|++|++++|.+++. + . +..+++|++|++++|++++. + .++.+++|
T Consensus 91 ~L~~N~l~~l~~----~~~-~~L~~L~L~~N~l~~~-~-~---------l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L 152 (263)
T 1xeu_A 91 SVNRNRLKNLNG----IPS-ACLSRLFLDNNELRDT-D-S---------LIHLKNLEILSIRNNKLKSI-V-MLGFLSKL 152 (263)
T ss_dssp ECCSSCCSCCTT----CCC-SSCCEEECCSSCCSBS-G-G---------GTTCTTCCEEECTTSCCCBC-G-GGGGCTTC
T ss_pred ECCCCccCCcCc----ccc-CcccEEEccCCccCCC-h-h---------hcCcccccEEECCCCcCCCC-h-HHccCCCC
Confidence 888888876532 122 7888888888888764 2 1 35678888888888888864 3 67888889
Q ss_pred CeeeccCCcCcccccccccCCCCCCEEeCCCCCcccc
Q 035547 352 YAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGK 388 (482)
Q Consensus 352 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 388 (482)
+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 153 ~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 153 EVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 9999999988855 5788888889999988888754
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=6.9e-18 Score=153.09 Aligned_cols=154 Identities=20% Similarity=0.169 Sum_probs=82.8
Q ss_pred ccEEEccCCCCCCCCC-CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccC
Q 035547 100 FSKLRLASSKPWVIPI-LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTIN 178 (482)
Q Consensus 100 L~~L~l~~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~ 178 (482)
.+.++++++.+..+|. +. ++|++|+|++|++++..|..|..+.. |++|++++|+++.++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~--L~~L~L~~N~l~~i~---------------- 80 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLIN--LKELYLGSNQLGALP---------------- 80 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTT--CCEEECCSSCCCCCC----------------
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccC--CcEEECCCCCCCCcC----------------
Confidence 3456666666666665 32 66777777777776655666666655 666666666665543
Q ss_pred CcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCc
Q 035547 179 KSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNF 258 (482)
Q Consensus 179 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 258 (482)
+..|..+++|+.|++++|++.+..+..+ ..+++|++|++++|.++. +
T Consensus 81 -------~~~~~~l~~L~~L~Ls~N~l~~l~~~~~-------------------------~~l~~L~~L~Ls~N~l~~-l 127 (229)
T 3e6j_A 81 -------VGVFDSLTQLTVLDLGTNQLTVLPSAVF-------------------------DRLVHLKELFMCCNKLTE-L 127 (229)
T ss_dssp -------TTTTTTCTTCCEEECCSSCCCCCCTTTT-------------------------TTCTTCCEEECCSSCCCS-C
T ss_pred -------hhhcccCCCcCEEECCCCcCCccChhHh-------------------------CcchhhCeEeccCCcccc-c
Confidence 2344555666666666666553323223 334444444444444442 3
Q ss_pred ChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccC
Q 035547 259 PCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRL 308 (482)
Q Consensus 259 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 308 (482)
|..+..+++|++|+|++|.+++.. +..+..+++|+.|++++|.+.+..
T Consensus 128 p~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 128 PRGIERLTHLTHLALDQNQLKSIP--HGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CTTGGGCTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CcccccCCCCCEEECCCCcCCccC--HHHHhCCCCCCEEEeeCCCccCCc
Confidence 344444445555555555444433 234445555555555555555443
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=2.4e-18 Score=167.34 Aligned_cols=154 Identities=20% Similarity=0.146 Sum_probs=79.2
Q ss_pred cccEEEccCCCCCCCCC--CC-CCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEE
Q 035547 99 SFSKLRLASSKPWVIPI--LK-NQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFS 175 (482)
Q Consensus 99 ~L~~L~l~~n~l~~l~~--~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~ 175 (482)
.++.|++++|.++.++. |. ++++|++|+|++|+|++..+..|..+.. |++|+|++|+|+.+
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~--L~~L~Ls~N~l~~~-------------- 103 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN--LRYLDLSSNHLHTL-------------- 103 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTT--CCEEECCSSCCCEE--------------
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCC--CCEEECCCCcCCcC--------------
Confidence 34555555555554433 33 4555555555555555444444444444 55555555544443
Q ss_pred ccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhc----ccCCCCCEEeCCC
Q 035547 176 TINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSL----ANCNMLQVLDLRN 251 (482)
Q Consensus 176 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~l~~L~~L~Ls~ 251 (482)
.+..|..+++|+.|++++|++.+..|..+..+. +|++|++++|.++.+|..+ ..+++|+.|++++
T Consensus 104 ---------~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~--~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 104 ---------DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA--QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp ---------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT--TCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS
T ss_pred ---------CHHHhCCCcCCCEEECCCCcccEECHHHhCCcc--cCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC
Confidence 334455556666666666666544444444444 5555555555555555432 3456666666666
Q ss_pred cccCCCcChhhhcCCCC--cEEEcccCccc
Q 035547 252 NHISDNFPCWLRNAFSL--QVLVFRSNNFS 279 (482)
Q Consensus 252 N~l~~~~~~~~~~l~~L--~~L~L~~N~i~ 279 (482)
|.+++..+..+..++.+ +.|+|++|.+.
T Consensus 173 N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 66665444555555442 44555555444
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=1e-17 Score=150.91 Aligned_cols=136 Identities=18% Similarity=0.179 Sum_probs=100.8
Q ss_pred EEEccCCcccccC-hhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhh-hcccCCCCCEEeCC
Q 035547 173 SFSTINKSLIGFI-PEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLK-SLANCNMLQVLDLR 250 (482)
Q Consensus 173 ~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~Ls 250 (482)
.|++++|.+.+.. +..|..+++|+.|++++|++.+..+..+.... +|++|++++|.++.++. .|..+++|++|+++
T Consensus 36 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS--GVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp EEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT--TCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred EEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC--CCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 3444444443332 24467788888888888888766665666665 78888888888877654 47778888888888
Q ss_pred CcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHH
Q 035547 251 NNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKW 312 (482)
Q Consensus 251 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 312 (482)
+|.+++..|..|..+++|++|+|++|.+++.. +..+..+++|++|+|++|.+.+..+-.+
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~c~c~l~~ 173 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVA--PGAFDTLHSLSTLNLLANPFNCNCYLAW 173 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC--TTTTTTCTTCCEEECCSCCEECSGGGHH
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEEC--HHHhcCCCCCCEEEecCcCCcCCCchHH
Confidence 88888877888888888888888888888776 5677888888888888888877665444
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=2.5e-18 Score=177.37 Aligned_cols=191 Identities=21% Similarity=0.265 Sum_probs=128.0
Q ss_pred CCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccccCCCCcccccCCCCCc
Q 035547 16 ENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEISN 95 (482)
Q Consensus 16 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~~ 95 (482)
..+..+.+..+.+.... .+..+++|+.|++++|.+..+ +....+++|++|+|++|+|+.++ . +.
T Consensus 21 ~~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~Ls~N~l~~~~------------~-l~ 84 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIK------------P-LT 84 (605)
T ss_dssp HHHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC-TTGGGCTTCCEEECTTSCCCCCG------------G-GG
T ss_pred HHHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCC-hHHccCCCCCEEEeeCCCCCCCh------------h-hc
Confidence 34555667777777643 356788888888888888765 34577888888888888887653 1 22
Q ss_pred CCccccEEEccCCCCCCCCCCCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEE
Q 035547 96 MSSSFSKLRLASSKPWVIPILKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFS 175 (482)
Q Consensus 96 ~~~~L~~L~l~~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~ 175 (482)
.+++|+.|+|++|.+..+|.+..+++|+.|+|++|.+.+ + ..+..++. |+.|+|++|+++.+
T Consensus 85 ~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~--L~~L~Ls~N~l~~l-------------- 146 (605)
T 1m9s_A 85 NLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQ--LESLYLGNNKITDI-------------- 146 (605)
T ss_dssp GCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCC-C-GGGGGCTT--CSEEECCSSCCCCC--------------
T ss_pred cCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCC-C-ccccCCCc--cCEEECCCCccCCc--------------
Confidence 227788888888888877778888888888888888874 3 44666766 88888888877764
Q ss_pred ccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccC
Q 035547 176 TINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHIS 255 (482)
Q Consensus 176 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~ 255 (482)
..+..+++|+.|++++|.+.+..| +..+. +|++|+|++|.++.++ .+..+++|+.|+|++|.+.
T Consensus 147 -----------~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~--~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 147 -----------TVLSRLTKLDTLSLEDNQISDIVP--LAGLT--KLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp -----------GGGGSCTTCSEEECCSSCCCCCGG--GTTCT--TCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEE
T ss_pred -----------hhhcccCCCCEEECcCCcCCCchh--hccCC--CCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCc
Confidence 234555666666666666653333 33333 5666666666665553 4555666666666666655
Q ss_pred C
Q 035547 256 D 256 (482)
Q Consensus 256 ~ 256 (482)
+
T Consensus 211 ~ 211 (605)
T 1m9s_A 211 N 211 (605)
T ss_dssp C
T ss_pred C
Confidence 4
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=8.3e-18 Score=173.46 Aligned_cols=170 Identities=21% Similarity=0.251 Sum_probs=108.5
Q ss_pred ccccEEEccCCCCCCCCCCCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEcc
Q 035547 98 SSFSKLRLASSKPWVIPILKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTI 177 (482)
Q Consensus 98 ~~L~~L~l~~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~ 177 (482)
+.|+.|++++|.+..++.+..+++|+.|+|++|.+++..+ +..+.. |+.|+|++|.++.++ .+..+++|+.|+++
T Consensus 43 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~--L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKN--LGWLFLDENKIKDLS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTT--CCEEECCSSCCCCCT-TSTTCTTCCEEECT
T ss_pred CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCC--CCEEECcCCCCCCCh-hhccCCCCCEEEec
Confidence 3444444444444444455556666666666666653322 555555 666666666666543 23345555555555
Q ss_pred CCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCC
Q 035547 178 NKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDN 257 (482)
Q Consensus 178 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 257 (482)
+|.+.+. ..+..+++|+.|++++|.+.+. ..+..+. +|+.|+|++|.+..++. +..+++|+.|+|++|.+++.
T Consensus 118 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~--~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 118 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLT--KLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp TSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCT--TCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC
T ss_pred CCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccC--CCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC
Confidence 5555542 3477788888888888888743 3455444 78888888888877765 77778888888888888763
Q ss_pred cChhhhcCCCCcEEEcccCccccc
Q 035547 258 FPCWLRNAFSLQVLVFRSNNFSER 281 (482)
Q Consensus 258 ~~~~~~~l~~L~~L~L~~N~i~~~ 281 (482)
..+..+++|+.|+|++|.+.+.
T Consensus 191 --~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 191 --RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp --GGGTTCTTCSEEECCSEEEECC
T ss_pred --hHHccCCCCCEEEccCCcCcCC
Confidence 3477778888888888877654
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=1.5e-18 Score=152.86 Aligned_cols=133 Identities=17% Similarity=0.153 Sum_probs=90.5
Q ss_pred cceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcCh-hhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEec
Q 035547 221 LGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPC-WLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDL 299 (482)
Q Consensus 221 L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~L 299 (482)
-+++++++|.++.+|..+. .++++|++++|.+++..+. .|..+++|++|+|++|.+++.. +..+..+++|++|+|
T Consensus 10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE--PNAFEGASHIQELQL 85 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC--TTTTTTCTTCCEEEC
T ss_pred CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC--HhHcCCcccCCEEEC
Confidence 3567777777777776443 2677777777777665443 3666777777777777776654 445555666666555
Q ss_pred CCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEe
Q 035547 300 ASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLD 379 (482)
Q Consensus 300 s~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 379 (482)
++|.++ +..+..|.++++|++|+|++|++++..|..|..+++|++|+
T Consensus 86 s~N~l~---------------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 86 GENKIK---------------------------------EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CSCCCC---------------------------------EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCcCC---------------------------------ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 555554 45555667777888888888888877777788888888888
Q ss_pred CCCCCccccCC
Q 035547 380 LLMNNLMGKIP 390 (482)
Q Consensus 380 l~~N~l~~~~p 390 (482)
+++|++.+.++
T Consensus 133 L~~N~l~c~c~ 143 (192)
T 1w8a_A 133 LASNPFNCNCH 143 (192)
T ss_dssp CTTCCBCCSGG
T ss_pred eCCCCccCcCc
Confidence 88888876554
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=1.4e-18 Score=183.63 Aligned_cols=224 Identities=20% Similarity=0.183 Sum_probs=120.9
Q ss_pred CCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCCCEEe
Q 035547 120 SQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLD 199 (482)
Q Consensus 120 ~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 199 (482)
+.++.|+|.+|.+.. .+..+ ++.++|+.|.|..+ ++..|.+. ..++.+..+..|+.|+
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~-------l~~l~Ls~~~i~~~-------------~~~~n~~~-~~~~~~~~l~~L~~L~ 230 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQAL-------LQHKKLSQYSIDED-------------DDIENRMV-MPKDSKYDDQLWHALD 230 (727)
T ss_dssp -----------------------------------------------------------------------CCCCCCEEE
T ss_pred CccceEEeeCCCCCc-chhhH-------hhcCccCcccccCc-------------ccccccee-cChhhhccCCCCcEEE
Confidence 457777777777763 33322 66666777666553 33344443 4577889999999999
Q ss_pred CCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccc
Q 035547 200 LSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFS 279 (482)
Q Consensus 200 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 279 (482)
|++|.+. .+|..++.+. +|++|+|++|.++.+|..+..+++|++|+|++|.++. +|..|..+++|++|+|++|.|+
T Consensus 231 Ls~n~l~-~l~~~~~~l~--~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 231 LSNLQIF-NISANIFKYD--FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT 306 (727)
T ss_dssp CTTSCCS-CCCGGGGGCC--SCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTTCSEEECCSSCCC
T ss_pred CCCCCCC-CCChhhcCCC--CCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCCCCEEECCCCCCC
Confidence 9999998 7888777666 9999999999999999999999999999999999995 6888999999999999999998
Q ss_pred cccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCC
Q 035547 280 ERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHN 359 (482)
Q Consensus 280 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 359 (482)
.+ +..++.+++|++|+|++|.+++.+|..+..... ....++|++|.+++.+|. .|+.|++++|
T Consensus 307 ~l---p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~--------~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 307 TL---PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV--------TGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp CC---CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH--------HHHHHHHHHCCCCCCCCC------C---------
T ss_pred cc---ChhhhcCCCccEEeCCCCccCCCChHHHhhcch--------hhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 54 456999999999999999999988876643211 112367888988887775 4566777776
Q ss_pred --------cCcccccccccCCCCCCEEeCCCCCcc
Q 035547 360 --------ALKGSIPSSFGNLKQIESLDLLMNNLM 386 (482)
Q Consensus 360 --------~l~~~~~~~~~~l~~L~~L~l~~N~l~ 386 (482)
.+.+..+..+..+..+....+++|.+.
T Consensus 370 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 370 GEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp --------------------------------CCC
T ss_pred cccccccCCccccccchhhcccccceeeeeccccc
Confidence 333334445556666677778888765
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=3.1e-18 Score=158.77 Aligned_cols=169 Identities=22% Similarity=0.204 Sum_probs=115.0
Q ss_pred ccccEEEccCCCCCCCCCCCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEcc
Q 035547 98 SSFSKLRLASSKPWVIPILKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTI 177 (482)
Q Consensus 98 ~~L~~L~l~~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~ 177 (482)
.++..++++++.+..++.+..+++|++|++++|.++ .++ .+..++. |++|++++|+++.+
T Consensus 19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~--L~~L~L~~N~i~~~---------------- 78 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLA-GMQFFTN--LKELHLSHNQISDL---------------- 78 (263)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCC-CCT-TGGGCTT--CCEEECCSSCCCCC----------------
T ss_pred HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcc-cch-HHhhCCC--CCEEECCCCccCCC----------------
Confidence 445556666666666555666666777777777665 344 4555555 66666666666654
Q ss_pred CCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCC
Q 035547 178 NKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDN 257 (482)
Q Consensus 178 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 257 (482)
+. +..+++|+.|++++|++. .+|.... ++|++|++++|.++.++ .+..+++|++|++++|++++.
T Consensus 79 --------~~-l~~l~~L~~L~L~~N~l~-~l~~~~~----~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~ 143 (263)
T 1xeu_A 79 --------SP-LKDLTKLEELSVNRNRLK-NLNGIPS----ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI 143 (263)
T ss_dssp --------GG-GTTCSSCCEEECCSSCCS-CCTTCCC----SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC
T ss_pred --------hh-hccCCCCCEEECCCCccC-CcCcccc----CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC
Confidence 22 667777778888887776 3443222 37888888888887775 577788888888888888774
Q ss_pred cChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCccc
Q 035547 258 FPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGR 307 (482)
Q Consensus 258 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 307 (482)
+ .+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+.
T Consensus 144 -~-~l~~l~~L~~L~L~~N~i~~~----~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 144 -V-MLGFLSKLEVLDLHGNEITNT----GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -G-GGGGCTTCCEEECTTSCCCBC----TTSTTCCCCCEEEEEEEEEECC
T ss_pred -h-HHccCCCCCEEECCCCcCcch----HHhccCCCCCEEeCCCCcccCC
Confidence 3 577788888888888888765 3566777777777777776643
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=8.1e-21 Score=194.73 Aligned_cols=184 Identities=17% Similarity=0.144 Sum_probs=137.1
Q ss_pred CCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCc-------------ccCCCCCC-CCCCCCCEEE-CcCCCCcc
Q 035547 13 GTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNH-------------FSGPIPSL-HKSRNLNYLD-LSSNNLNE 77 (482)
Q Consensus 13 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~-~~l~~L~~L~-Ls~N~i~~ 77 (482)
...++|+.|+|++|.++. +|..++.+++|+.|++++|. +.+..|.. ..+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~-Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTV-LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHHh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 678999999999999985 79999999999999998775 34445554 7788899998 77776554
Q ss_pred cc--cCCCCcccccCCCCCcCCccccEEEccCCCCCCCCCCCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCC
Q 035547 78 IH--LLSNNQFENQFPEISNMSSSFSKLRLASSKPWVIPILKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQ 155 (482)
Q Consensus 78 l~--~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~ 155 (482)
++ .++.|.+....+ ..|+.|++++|.++.+|.++.+++|+.|+|++|.++ .+|..+..++. |+.|+|++
T Consensus 425 L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~--L~~L~Ls~ 495 (567)
T 1dce_A 425 LRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRC--LEVLQASD 495 (567)
T ss_dssp HHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTT--CCEEECCS
T ss_pred hhhhhhhcccccccCc------cCceEEEecCCCCCCCcCccccccCcEeecCccccc-ccchhhhcCCC--CCEEECCC
Confidence 42 233444443322 358889999999998888888999999999999998 88888888888 99999999
Q ss_pred CcccCCCCCCCCCCCccEEEccCCcccccC-hhhhhcCCCCCEEeCCCCcccc
Q 035547 156 NLLVSLQEPYHISGRTYSFSTINKSLIGFI-PEYICKATYFQVLDLSNNNLSG 207 (482)
Q Consensus 156 n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~ 207 (482)
|+|+++| .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|.+.+
T Consensus 496 N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 496 NALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp SCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 9988865 3335566666666666665554 5556666666666666666553
No 119
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.3e-17 Score=147.56 Aligned_cols=150 Identities=15% Similarity=0.159 Sum_probs=60.6
Q ss_pred CCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCCCEE
Q 035547 119 QSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVL 198 (482)
Q Consensus 119 l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L 198 (482)
+++|+.|++++|.++ .+| .+..++. |++|++++|.++.++ .+..+++|+.|++++|.+.+..+..+..+++|++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~--L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHN--IKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTT--CSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCC--CCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 344455555555544 333 3444444 555555554443321 11122222222333333322223334444444444
Q ss_pred eCCCCcccccCChhhhhcCcCccceEEccCCC-CCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCc
Q 035547 199 DLSNNNLSGSIPACLITKSSTTLGVLNLRRNN-LGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNN 277 (482)
Q Consensus 199 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (482)
++++|++.+..|..+.... +|++|++++|. ++.+| .+..+++|++|++++|.+++. + .+..+++|++|++++|+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~--~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLP--KVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCS--SCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred EecCCccCcHhHHHHhhCC--CCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence 4444444433333333333 44444444443 44443 344444444444444444431 1 33444444444444444
Q ss_pred c
Q 035547 278 F 278 (482)
Q Consensus 278 i 278 (482)
+
T Consensus 193 i 193 (197)
T 4ezg_A 193 I 193 (197)
T ss_dssp -
T ss_pred c
Confidence 3
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=2.7e-18 Score=164.78 Aligned_cols=299 Identities=13% Similarity=0.048 Sum_probs=180.0
Q ss_pred ecCCcCCCC--CCCCCEEeCCCCcCCCCCchhccC-CCCCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccccCC
Q 035547 6 GTLPDSIGT--LENLTRVDLRSYNFTRPIPTSMAN-LAQLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIHLLS 82 (482)
Q Consensus 6 g~~p~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~ 82 (482)
|+++..+.. +.+++.|.++++ +.......+.. +++|++|||++|++.........++.++.+.+..|.| .
T Consensus 13 g~l~~~l~~~~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I------~ 85 (329)
T 3sb4_A 13 GTLISMMTEEEANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFV------P 85 (329)
T ss_dssp TCGGGGSCHHHHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEE------C
T ss_pred CcHHhhccchhhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccccc------C
Confidence 444444443 677899999864 33222234444 7889999999999872111112333355666666532 2
Q ss_pred CCcccccCCCCCcCCccccEEEccCCCCCCCCC--CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCc---
Q 035547 83 NNQFENQFPEISNMSSSFSKLRLASSKPWVIPI--LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNL--- 157 (482)
Q Consensus 83 ~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~--- 157 (482)
...|.+..+.....+++|+++++.. .++.|+. |.++++|+.+++++|.+....+.+|..... +..+....+.
T Consensus 86 ~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~--l~~l~~~~~~~~~ 162 (329)
T 3sb4_A 86 AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVT--AIFIPLGSSDAYR 162 (329)
T ss_dssp TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTC--EEEECTTCTHHHH
T ss_pred HHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCc--eEEecCcchhhhh
Confidence 2333332222222258899999988 8888877 999999999999999988677777776554 7777666532
Q ss_pred -ccCCCCCCC-CCCCcc-EEEccCCcccccChhhhh----cCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCC
Q 035547 158 -LVSLQEPYH-ISGRTY-SFSTINKSLIGFIPEYIC----KATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNN 230 (482)
Q Consensus 158 -i~~~~~~~~-~~~~l~-~L~l~~n~~~~~~~~~~~----~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~ 230 (482)
...+....+ ....++ .+.+.... .++..+. ...+++.+.+.++-.. .....+.. .+++|+.+++++|.
T Consensus 163 ~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~-~~~~L~~l~L~~n~ 237 (329)
T 3sb4_A 163 FKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRD-YMPNLVSLDISKTN 237 (329)
T ss_dssp TSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHH-HCTTCCEEECTTBC
T ss_pred ccccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHH-hcCCCeEEECCCCC
Confidence 223333333 333444 33333221 1222211 2344555555544221 11111111 12378888888877
Q ss_pred CCchhh-hcccCCCCCEEeCCCcccCCCcChhhhcCCCCc-EEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccC
Q 035547 231 LGVVLK-SLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQ-VLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRL 308 (482)
Q Consensus 231 l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 308 (482)
++.++. +|.++.+|+.+++++| ++.+.+..|.++.+|+ .+++.+ .++.+. +.+|.+|++|+.+++++|.++...
T Consensus 238 i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~--~~aF~~c~~L~~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 238 ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIE--FGAFMGCDNLRYVLATGDKITTLG 313 (329)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEEC--TTTTTTCTTEEEEEECSSCCCEEC
T ss_pred cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEc--hhhhhCCccCCEEEeCCCccCccc
Confidence 877765 5777778888888777 6666677788888887 888877 566554 577788888888888777777655
Q ss_pred CHHHHHHHHHHHhhcCCcceEEeC
Q 035547 309 SQKWLLTMMIIQLKIPNIFTSIDC 332 (482)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~L~~L~L 332 (482)
+..| .++++|+.++.
T Consensus 314 ~~aF---------~~~~~L~~ly~ 328 (329)
T 3sb4_A 314 DELF---------GNGVPSKLIYK 328 (329)
T ss_dssp TTTT---------CTTCCCCEEEC
T ss_pred hhhh---------cCCcchhhhcc
Confidence 5433 56777777653
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=2.8e-19 Score=183.35 Aligned_cols=216 Identities=13% Similarity=0.066 Sum_probs=132.1
Q ss_pred CCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcc-cCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCC
Q 035547 117 KNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLL-VSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYF 195 (482)
Q Consensus 117 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i-~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L 195 (482)
...++|+.|+|++|+++ .+|..++.++. |+.|++++|.. ..++ ..+..+...+..|..+..+++|
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~--L~~L~l~~n~~l~~l~-----------~ll~~~~~~~~~~~~l~~l~~L 411 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKE--LQELEPENKWCLLTII-----------LLMRALDPLLYEKETLQYFSTL 411 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHH--HHHHCTTCHHHHHHHH-----------HHHHHHCTGGGHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHH--HHHhccccchhhhhHH-----------HHHHhcccccCCHHHHHHHHhc
Confidence 56788999999999997 78999998888 99999876641 1110 0001112334567777888888
Q ss_pred CEEe-CCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcc
Q 035547 196 QVLD-LSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFR 274 (482)
Q Consensus 196 ~~L~-l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 274 (482)
+.|+ ++.|.+. .|+.+.+++|.++.++. ..|+.|++++|.+++ +|. +..+++|+.|+|+
T Consensus 412 ~~L~~l~~n~~~-------------~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls 471 (567)
T 1dce_A 412 KAVDPMRAAYLD-------------DLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLS 471 (567)
T ss_dssp HHHCGGGHHHHH-------------HHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECC
T ss_pred ccCcchhhcccc-------------hhhhhhhhcccccccCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecC
Confidence 8887 5655443 23333344444433332 135566666666655 343 5556666666666
Q ss_pred cCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccC-hHhhhcCCCCCe
Q 035547 275 SNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPM-PEEMGRFKSLYA 353 (482)
Q Consensus 275 ~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~ 353 (482)
+|.++.. +..++.+++|++|+|++|.+++ +| .+ ..+++|++|+|++|.+++.. |..++.+++|+.
T Consensus 472 ~N~l~~l---p~~~~~l~~L~~L~Ls~N~l~~-lp-~l---------~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~ 537 (567)
T 1dce_A 472 HNRLRAL---PPALAALRCLEVLQASDNALEN-VD-GV---------ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537 (567)
T ss_dssp SSCCCCC---CGGGGGCTTCCEEECCSSCCCC-CG-GG---------TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred ccccccc---chhhhcCCCCCEEECCCCCCCC-Cc-cc---------CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCE
Confidence 6665522 3455556666666666666654 23 22 45666666666666666665 777888888888
Q ss_pred eeccCCcCcccccc---cccCCCCCCEEeC
Q 035547 354 PNMSHNALKGSIPS---SFGNLKQIESLDL 380 (482)
Q Consensus 354 L~Ls~N~l~~~~~~---~~~~l~~L~~L~l 380 (482)
|+|++|++++..|. .+..+++|+.|++
T Consensus 538 L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 538 LNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 88888888754432 1334778887764
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=6.9e-18 Score=148.65 Aligned_cols=107 Identities=22% Similarity=0.260 Sum_probs=93.4
Q ss_pred CEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhh--cccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEc
Q 035547 196 QVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKS--LANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVF 273 (482)
Q Consensus 196 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 273 (482)
+.+++++|.+. .+|..+.. ++++|++++|.++.++.. +..+++|++|++++|.+++..|..|.++++|++|+|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~----~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL----HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT----TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcC-cCccCCCC----CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 78999999997 78876542 899999999999998863 889999999999999999988999999999999999
Q ss_pred ccCccccccCCCCCCCCCCCCCEEecCCCCCcccCC
Q 035547 274 RSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLS 309 (482)
Q Consensus 274 ~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 309 (482)
++|++++.. +..+..+++|++|+|++|.+++..|
T Consensus 86 s~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~ 119 (192)
T 1w8a_A 86 GENKIKEIS--NKMFLGLHQLKTLNLYDNQISCVMP 119 (192)
T ss_dssp CSCCCCEEC--SSSSTTCTTCCEEECCSSCCCEECT
T ss_pred CCCcCCccC--HHHhcCCCCCCEEECCCCcCCeeCH
Confidence 999999887 5667888888888888887775544
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=8.6e-18 Score=177.59 Aligned_cols=179 Identities=20% Similarity=0.173 Sum_probs=70.2
Q ss_pred CCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccccCCCCcccccCCCCCcCCccccEEEccCCCCCCCCC-CCCC
Q 035547 41 QLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEISNMSSSFSKLRLASSKPWVIPI-LKNQ 119 (482)
Q Consensus 41 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~l~~-~~~l 119 (482)
.++.|+|.+|.+... ....|+.++|+.|.|+.+ +++.|.+. ..|+.+...+.|+.|+|++|.+..+|. +.++
T Consensus 174 ~~~~l~L~~n~~~~~-----~~~~l~~l~Ls~~~i~~~-~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l 246 (727)
T 4b8c_D 174 LTPKIELFANGKDEA-----NQALLQHKKLSQYSIDED-DDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKY 246 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGC
T ss_pred ccceEEeeCCCCCcc-----hhhHhhcCccCcccccCc-ccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCC
Confidence 344555555444432 112233444444444444 33333333 223333333555555555555555554 4455
Q ss_pred CCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCCCEEe
Q 035547 120 SQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLD 199 (482)
Q Consensus 120 ~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 199 (482)
++|++|+|++|.|+ .+|..+..+.. |++|+|++|+|+.+|..+..+++|+.|++++|.+. .+|..|+.+++|+.|+
T Consensus 247 ~~L~~L~Ls~N~l~-~lp~~~~~l~~--L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 247 DFLTRLYLNGNSLT-ELPAEIKNLSN--LRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLG 322 (727)
T ss_dssp CSCSCCBCTTSCCS-CCCGGGGGGTT--CCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEE
T ss_pred CCCCEEEeeCCcCc-ccChhhhCCCC--CCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEe
Confidence 55666666666655 55555555555 66666666655555444444555555555555543 2344466666666666
Q ss_pred CCCCcccccCChhhhhcCcCccceEEccCCCC
Q 035547 200 LSNNNLSGSIPACLITKSSTTLGVLNLRRNNL 231 (482)
Q Consensus 200 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l 231 (482)
+++|.+.+.+|..+..... ....+++++|.+
T Consensus 323 L~~N~l~~~~p~~~~~~~~-~~~~l~l~~N~l 353 (727)
T 4b8c_D 323 VEGNPLEKQFLKILTEKSV-TGLIFYLRDNRP 353 (727)
T ss_dssp CTTSCCCSHHHHHHHHHHH-HHHHHHHHHCCC
T ss_pred CCCCccCCCChHHHhhcch-hhhHHhhccCcc
Confidence 6666666555555543321 222344555555
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.69 E-value=5.6e-17 Score=142.82 Aligned_cols=129 Identities=20% Similarity=0.200 Sum_probs=85.4
Q ss_pred ceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCC
Q 035547 222 GVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLAS 301 (482)
Q Consensus 222 ~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~ 301 (482)
+.++++++.++.+|..+. ++|++|++++|.++. +|..|..+++|++|+|++|.|++.. +..|..+++|++|+|++
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~--~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLS--NQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeC--HhHccCCCCCCEEECCC
Confidence 455666666666665432 466667777776664 4466666667777777777666554 34555555555555555
Q ss_pred CCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCC
Q 035547 302 NKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLL 381 (482)
Q Consensus 302 n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 381 (482)
|.++ +..+..|..+++|+.|+|++|+|+...+..|..+++|+.|+++
T Consensus 88 N~l~---------------------------------~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 88 NRLR---------------------------------CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp SCCC---------------------------------BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CccC---------------------------------EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 5444 3445567778888888888888885555568888888888888
Q ss_pred CCCcccc
Q 035547 382 MNNLMGK 388 (482)
Q Consensus 382 ~N~l~~~ 388 (482)
+|++.+.
T Consensus 135 ~N~~~C~ 141 (193)
T 2wfh_A 135 ANPLYCD 141 (193)
T ss_dssp SSCEECS
T ss_pred CCCeecC
Confidence 8888753
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=9.8e-17 Score=153.91 Aligned_cols=284 Identities=10% Similarity=0.036 Sum_probs=170.3
Q ss_pred CCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCcccccCCCCcccccCCCCCcCCccccEEEccCCCCCCCCC-
Q 035547 38 NLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEISNMSSSFSKLRLASSKPWVIPI- 115 (482)
Q Consensus 38 ~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~l~~- 115 (482)
.+.++++|.++++--....... ..+++|++|||++|+|.... ... +.+ +.++.+.+..+ .||.
T Consensus 23 ~~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~-~~~----~~~-------~~~~~~~~~~~---~I~~~ 87 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYS-GKA----GTY-------PNGKFYIYMAN---FVPAY 87 (329)
T ss_dssp HHHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEE-ESS----SSS-------GGGCCEEECTT---EECTT
T ss_pred hhCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEec-Ccc----ccc-------ccccccccccc---ccCHH
Confidence 3678999999875211111111 22889999999999887331 000 111 22334444444 4555
Q ss_pred -CCC--------CCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCC-CCCCccEEEccCCcc----
Q 035547 116 -LKN--------QSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYH-ISGRTYSFSTINKSL---- 181 (482)
Q Consensus 116 -~~~--------l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~-~~~~l~~L~l~~n~~---- 181 (482)
|.+ +++|+.|+|.+ .++...+.+|..+.. |+.+++.+|.++.+++..| ...++..+....+..
T Consensus 88 aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~--L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~ 164 (329)
T 3sb4_A 88 AFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDN--LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFK 164 (329)
T ss_dssp TTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTT--CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTS
T ss_pred HhcccccccccccCCCcEEECCc-cccchhHHHhhcCcc--cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcc
Confidence 777 99999999998 888677788888888 9999999999988887777 555666665544221
Q ss_pred cccChhhhhcCCCCC-EEeCCCCcccccCChhhhhc--CcCccceEEccCCCCCchhhhc-ccCCCCCEEeCCCcccCCC
Q 035547 182 IGFIPEYICKATYFQ-VLDLSNNNLSGSIPACLITK--SSTTLGVLNLRRNNLGVVLKSL-ANCNMLQVLDLRNNHISDN 257 (482)
Q Consensus 182 ~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~-~~l~~L~~L~Ls~N~l~~~ 257 (482)
......+|..+..|+ .+.+.... .++..+... ...++..+.+.++-...-...+ ..+++|+.+++++|.++.+
T Consensus 165 ~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I 241 (329)
T 3sb4_A 165 NRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTI 241 (329)
T ss_dssp TTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEE
T ss_pred ccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCccee
Confidence 112233455555555 34443221 222222211 1125556665554322111122 2367777777777777776
Q ss_pred cChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCC-EEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCc
Q 035547 258 FPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLK-IVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNN 336 (482)
Q Consensus 258 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 336 (482)
.+..|.++.+|+.+++.+| ++.+. ..+|.++++|+ .+++.+ .++
T Consensus 242 ~~~aF~~~~~L~~l~l~~n-i~~I~--~~aF~~~~~L~~~l~l~~-~l~------------------------------- 286 (329)
T 3sb4_A 242 PDFTFAQKKYLLKIKLPHN-LKTIG--QRVFSNCGRLAGTLELPA-SVT------------------------------- 286 (329)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEEC--TTTTTTCTTCCEEEEECT-TCC-------------------------------
T ss_pred cHhhhhCCCCCCEEECCcc-cceeh--HHHhhCChhccEEEEEcc-cce-------------------------------
Confidence 6677777777777777776 55544 56677777777 776665 333
Q ss_pred ccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEe
Q 035547 337 FEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLD 379 (482)
Q Consensus 337 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 379 (482)
.+.+.+|.++++|+.+++++|+++...+.+|.++++|+.+.
T Consensus 287 --~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 287 --AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp --EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred --EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 34455666666777777766666655555666676666664
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=3.2e-16 Score=134.82 Aligned_cols=134 Identities=18% Similarity=0.140 Sum_probs=102.4
Q ss_pred CCCCCEEeCCCcccC-CCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHH
Q 035547 241 CNMLQVLDLRNNHIS-DNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMII 319 (482)
Q Consensus 241 l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 319 (482)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~------- 91 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV----SNLPKLPKLKKLELSENRIFGGLDMLA------- 91 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESCCCCSCCCHHH-------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCCcCchHHHHHH-------
Confidence 467788888888776 44666677778888888888887754 456778888888888888887666433
Q ss_pred HhhcCCcceEEeCCCCcccccC-hHhhhcCCCCCeeeccCCcCccccc---ccccCCCCCCEEeCCCCCccc
Q 035547 320 QLKIPNIFTSIDCSSNNFEGPM-PEEMGRFKSLYAPNMSHNALKGSIP---SSFGNLKQIESLDLLMNNLMG 387 (482)
Q Consensus 320 ~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~~ 387 (482)
..+++|++|++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+..
T Consensus 92 --~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 92 --EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp --HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred --hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 45788888888888888643 2678888999999999999885444 378889999999999888763
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=1.1e-15 Score=132.70 Aligned_cols=134 Identities=16% Similarity=0.113 Sum_probs=89.4
Q ss_pred ccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEec
Q 035547 220 TLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDL 299 (482)
Q Consensus 220 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~L 299 (482)
+.+.+++++++++.+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++.. +..+..+++|++|++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP--DGVFDKLTKLTILYL 83 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEEC
T ss_pred CCCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC--hhHccCCCccCEEEC
Confidence 3456666666666666443 256777777777776655556666677777777777666543 334455555555555
Q ss_pred CCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEe
Q 035547 300 ASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLD 379 (482)
Q Consensus 300 s~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 379 (482)
++|.++ +..+..+..+++|+.|++++|++++..+..+..+++|++|+
T Consensus 84 ~~N~l~---------------------------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 84 HENKLQ---------------------------------SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CSSCCC---------------------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCCcc---------------------------------ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 555444 44455667788888888888888855555567888888889
Q ss_pred CCCCCccccCC
Q 035547 380 LLMNNLMGKIP 390 (482)
Q Consensus 380 l~~N~l~~~~p 390 (482)
+++|++.+.+|
T Consensus 131 l~~N~~~~~~~ 141 (177)
T 2o6r_A 131 LHTNPWDCSCP 141 (177)
T ss_dssp CCSSCBCCCHH
T ss_pred ecCCCeeccCc
Confidence 98888887655
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=4.2e-16 Score=131.25 Aligned_cols=128 Identities=18% Similarity=0.141 Sum_probs=93.3
Q ss_pred CCCCEEeCCCcccC-CCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHH
Q 035547 242 NMLQVLDLRNNHIS-DNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQ 320 (482)
Q Consensus 242 ~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 320 (482)
++|+.|++++|.++ +..|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~-------- 84 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI----ANLPKLNKLKKLELSDNRVSGGLEVLA-------- 84 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC----TTCCCCTTCCEEECCSSCCCSCTHHHH--------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc----hhhhcCCCCCEEECCCCcccchHHHHh--------
Confidence 56777777777776 44566667777777777777777654 456677778888888888776555332
Q ss_pred hhcCCcceEEeCCCCccccc-ChHhhhcCCCCCeeeccCCcCccccc---ccccCCCCCCEEeCCC
Q 035547 321 LKIPNIFTSIDCSSNNFEGP-MPEEMGRFKSLYAPNMSHNALKGSIP---SSFGNLKQIESLDLLM 382 (482)
Q Consensus 321 ~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~l~~ 382 (482)
..+++|++|++++|.+++. .+..++.+++|++|++++|.+++..+ ..+..+++|+.||+++
T Consensus 85 -~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 85 -EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp -HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred -hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 4577888888888888763 34678888889999999988885544 4678888888888763
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=1.9e-15 Score=130.02 Aligned_cols=133 Identities=23% Similarity=0.211 Sum_probs=86.8
Q ss_pred CCCCEEEcccCccc-ccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCCCCEE
Q 035547 120 SQLSFFYISNNQIS-GEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVL 198 (482)
Q Consensus 120 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L 198 (482)
++|++|++++|.++ +.+|..+..++. |++|++++|.++.+ ..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~--L~~L~l~~n~l~~~-------------------------~~~~~l~~L~~L 76 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVN--LEFLSLINVGLISV-------------------------SNLPKLPKLKKL 76 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGG--CCEEEEESSCCCCC-------------------------SSCCCCSSCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCC--CCEEeCcCCCCCCh-------------------------hhhccCCCCCEE
Confidence 55666666666665 455655566655 66666666666654 234555666666
Q ss_pred eCCCCcccccCChhhhhcCcCccceEEccCCCCCchh--hhcccCCCCCEEeCCCcccCCCcC---hhhhcCCCCcEEEc
Q 035547 199 DLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVL--KSLANCNMLQVLDLRNNHISDNFP---CWLRNAFSLQVLVF 273 (482)
Q Consensus 199 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L 273 (482)
++++|.+.+.+|..+.... +|++|++++|.++.++ ..+..+++|++|++++|.+++..+ ..+..+++|++|++
T Consensus 77 ~Ls~N~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 154 (168)
T 2ell_A 77 ELSENRIFGGLDMLAEKLP--NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDG 154 (168)
T ss_dssp EEESCCCCSCCCHHHHHCT--TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETT
T ss_pred ECcCCcCchHHHHHHhhCC--CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecC
Confidence 6666666644555544444 6666666666666655 567777888888888888877544 46777888888888
Q ss_pred ccCccccc
Q 035547 274 RSNNFSER 281 (482)
Q Consensus 274 ~~N~i~~~ 281 (482)
++|.+...
T Consensus 155 ~~n~~~~~ 162 (168)
T 2ell_A 155 YDREDQEA 162 (168)
T ss_dssp EETTSCBC
T ss_pred CCCChhhc
Confidence 88877654
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=2.6e-15 Score=132.07 Aligned_cols=104 Identities=28% Similarity=0.316 Sum_probs=90.2
Q ss_pred CEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEccc
Q 035547 196 QVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRS 275 (482)
Q Consensus 196 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 275 (482)
+.+++++|.+. .+|..+. . ++++|++++|.++.+|..+..+++|++|++++|.+++..+..|.++++|++|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~--~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--R--DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--T--TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC--C--CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 67899999988 7776543 2 89999999999999999999999999999999999998888899999999999999
Q ss_pred CccccccCCCCCCCCCCCCCEEecCCCCCcc
Q 035547 276 NNFSERISCPRNNVSWPLLKIVDLASNKFSG 306 (482)
Q Consensus 276 N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 306 (482)
|.+++.. +..|..+++|++|+|++|.++.
T Consensus 88 N~l~~i~--~~~f~~l~~L~~L~L~~N~l~~ 116 (193)
T 2wfh_A 88 NRLRCIP--PRTFDGLKSLRLLSLHGNDISV 116 (193)
T ss_dssp SCCCBCC--TTTTTTCTTCCEEECCSSCCCB
T ss_pred CccCEeC--HHHhCCCCCCCEEECCCCCCCe
Confidence 9999876 5678888888888888887764
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=4.5e-14 Score=138.46 Aligned_cols=200 Identities=12% Similarity=0.053 Sum_probs=97.7
Q ss_pred CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCC-CCCCccEEEccCCcccccChhhhhcCCC
Q 035547 116 LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYH-ISGRTYSFSTINKSLIGFIPEYICKATY 194 (482)
Q Consensus 116 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~-~~~~l~~L~l~~n~~~~~~~~~~~~l~~ 194 (482)
|.++++|+.+++++|+++.....+|. ... |+.+.+.. .++.++...| .+++|+.+.+..+ +...-..+|.. .+
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~~aF~-~~~--L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~ 249 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPASTFV-YAG--IEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SG 249 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECTTTTT-TCC--CSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CC
T ss_pred hhCcccCCeeecCCCcceEechhhEe-ecc--cCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CC
Confidence 44444444444444444422222222 222 44444442 2444444444 4444444444432 23333344444 44
Q ss_pred CCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCC-----chh-hhcccCCCCCEEeCCCcccCCCcChhhhcCCCC
Q 035547 195 FQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLG-----VVL-KSLANCNMLQVLDLRNNHISDNFPCWLRNAFSL 268 (482)
Q Consensus 195 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-----~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 268 (482)
|+.+.+. +.+...-..+|.... +|+.+.+.++.+. .++ .+|.+|++|+.+++. +.++.+....|.++.+|
T Consensus 250 L~~i~lp-~~i~~I~~~aF~~c~--~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 250 ITTVKLP-NGVTNIASRAFYYCP--ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKV 325 (401)
T ss_dssp CSEEEEE-TTCCEECTTTTTTCT--TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSC
T ss_pred ccEEEeC-CCccEEChhHhhCCC--CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCc
Confidence 5555552 223322233333333 5555555554443 232 356666677777776 33555556666677777
Q ss_pred cEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcC-CcceEEeCCCCccc
Q 035547 269 QVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIP-NIFTSIDCSSNNFE 338 (482)
Q Consensus 269 ~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~ 338 (482)
+.+.+..+ ++.+. ..+|.++ +|+.+++++|.+....+..| ..+ ..++.|.+..+.+.
T Consensus 326 ~~l~lp~~-l~~I~--~~aF~~~-~L~~l~l~~n~~~~l~~~~F---------~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 326 TQLTIPAN-VTQIN--FSAFNNT-GIKEVKVEGTTPPQVFEKVW---------YGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CEEEECTT-CCEEC--TTSSSSS-CCCEEEECCSSCCBCCCSSC---------CCSCTTCCEEEECGGGHH
T ss_pred cEEEECcc-ccEEc--HHhCCCC-CCCEEEEcCCCCcccccccc---------cCCCCCccEEEeCHHHHH
Confidence 77777544 44443 4566666 77777777766554433322 223 35666666666544
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=2.5e-15 Score=126.47 Aligned_cols=84 Identities=24% Similarity=0.204 Sum_probs=51.8
Q ss_pred hhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchh--hhcccCCCCCEEeCCCcccCCCcC---hhhh
Q 035547 189 ICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVL--KSLANCNMLQVLDLRNNHISDNFP---CWLR 263 (482)
Q Consensus 189 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~ 263 (482)
+..+++|++|++++|.+.+.+|..+.... +|++|++++|.++.++ ..+..+++|++|++++|.+++..+ ..+.
T Consensus 60 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 137 (149)
T 2je0_A 60 LPKLNKLKKLELSDNRVSGGLEVLAEKCP--NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFK 137 (149)
T ss_dssp CCCCTTCCEEECCSSCCCSCTHHHHHHCT--TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHH
T ss_pred hhcCCCCCEEECCCCcccchHHHHhhhCC--CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHH
Confidence 44555666666666666544554444444 5666666666665544 566667777777777777776544 4566
Q ss_pred cCCCCcEEEcc
Q 035547 264 NAFSLQVLVFR 274 (482)
Q Consensus 264 ~l~~L~~L~L~ 274 (482)
.+++|++|+++
T Consensus 138 ~l~~L~~L~l~ 148 (149)
T 2je0_A 138 LLPQLTYLDGY 148 (149)
T ss_dssp HCTTCCEETTB
T ss_pred HCCCcccccCC
Confidence 77777777665
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=6.4e-14 Score=137.37 Aligned_cols=263 Identities=8% Similarity=0.111 Sum_probs=177.0
Q ss_pred CCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccccCCCCcccccCCCCC
Q 035547 15 LENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEIS 94 (482)
Q Consensus 15 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~ 94 (482)
+..++.+.+.+ .++.+...+|.++ +|+.+++.++ ++.+....+.-.+|+.+.+.. .++.+. +..|
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~-----------~~aF 176 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLK-----------EDIF 176 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEEC-----------SSTT
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEeh-----------HHHh
Confidence 35666666653 4555555666664 6777777655 555555543224677777764 455442 2334
Q ss_pred cCCccccEEEccCCCCCCCCC--CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCCCCCcc
Q 035547 95 NMSSSFSKLRLASSKPWVIPI--LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTY 172 (482)
Q Consensus 95 ~~~~~L~~L~l~~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~ 172 (482)
..+++|+.+++.+|.+..++. |. ..+|+.+.+..+ ++.....+|..... |+.+++..+ ++.++...|...+++
T Consensus 177 ~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~--L~~l~l~~~-l~~I~~~aF~~~~L~ 251 (401)
T 4fdw_A 177 YYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQ--LKTIEIPEN-VSTIGQEAFRESGIT 251 (401)
T ss_dssp TTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTT--CCCEECCTT-CCEECTTTTTTCCCS
T ss_pred hCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCC--CCEEecCCC-ccCccccccccCCcc
Confidence 334677777777777776666 54 467777777643 55455566666666 777777663 666666666446777
Q ss_pred EEEccCCcccccChhhhhcCCCCCEEeCCCCccc-----ccCChhhhhcCcCccceEEccCCCCCchhh-hcccCCCCCE
Q 035547 173 SFSTINKSLIGFIPEYICKATYFQVLDLSNNNLS-----GSIPACLITKSSTTLGVLNLRRNNLGVVLK-SLANCNMLQV 246 (482)
Q Consensus 173 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~ 246 (482)
.+.+ .+.+......+|..+++|+.+++.+|.+. ..-+.+|.... +|+.+.+. +.++.++. +|.+|.+|+.
T Consensus 252 ~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~--~L~~l~l~-~~i~~I~~~aF~~c~~L~~ 327 (401)
T 4fdw_A 252 TVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP--KLARFEIP-ESIRILGQGLLGGNRKVTQ 327 (401)
T ss_dssp EEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT--TCCEECCC-TTCCEECTTTTTTCCSCCE
T ss_pred EEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc--cCCeEEeC-CceEEEhhhhhcCCCCccE
Confidence 7777 34455556778888888888888877654 23344555555 88899888 45777754 7888899999
Q ss_pred EeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCC-CCCEEecCCCCCc
Q 035547 247 LDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWP-LLKIVDLASNKFS 305 (482)
Q Consensus 247 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~-~L~~L~Ls~n~l~ 305 (482)
+++..| ++.+....|.++ +|+.+++.+|.+.... ...|.+++ +++.|++..+.+.
T Consensus 328 l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~--~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 328 LTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF--EKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp EEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCC--CSSCCCSCTTCCEEEECGGGHH
T ss_pred EEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc--cccccCCCCCccEEEeCHHHHH
Confidence 999665 676677889999 9999999999887665 56777775 7888888776543
No 134
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.58 E-value=1.1e-13 Score=136.18 Aligned_cols=306 Identities=13% Similarity=0.116 Sum_probs=154.2
Q ss_pred CCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCcccccCCCCccccc
Q 035547 11 SIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLNEIHLLSNNQFENQ 89 (482)
Q Consensus 11 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~ 89 (482)
+|.++.+|+.+.+.. .++.+...+|.++.+|+.+++.++ ++.+.... ..+.+|+.+.+..+ ++.+. ...|.
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~---~~aF~-- 137 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIG---VEAFK-- 137 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEEC---TTTTT--
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeec---ceeee--
Confidence 567777777777763 466655667777777877777654 44444444 66777777666543 33221 11111
Q ss_pred CCCCCcCCccccEEEccCCCCCCCCC--CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCCC
Q 035547 90 FPEISNMSSSFSKLRLASSKPWVIPI--LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYHI 167 (482)
Q Consensus 90 ~p~~~~~~~~L~~L~l~~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~~ 167 (482)
. ..+...... .....+.. |.++++|+.+.+.++. .......|..... |+.+++..+ ++.+.
T Consensus 138 ------~-~~~~~~~~~-~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~--L~~i~l~~~-~~~I~----- 200 (394)
T 4fs7_A 138 ------G-CDFKEITIP-EGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGK--LKSIKLPRN-LKIIR----- 200 (394)
T ss_dssp ------T-CCCSEEECC-TTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTT--CCBCCCCTT-CCEEC-----
T ss_pred ------c-ccccccccC-ccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCC--ceEEEcCCC-ceEeC-----
Confidence 1 111111111 11222222 6677777777775543 2244455555555 666666554 44433
Q ss_pred CCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchh-hhcccCCCCCE
Q 035547 168 SGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVL-KSLANCNMLQV 246 (482)
Q Consensus 168 ~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~l~~L~~ 246 (482)
..+|..+..|+.+.+..+... +........ +|+.+.+.... ..+. .++..+..++.
T Consensus 201 ------------------~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~--~l~~i~ip~~~-~~i~~~~f~~~~~l~~ 257 (394)
T 4fs7_A 201 ------------------DYCFAECILLENMEFPNSLYY--LGDFALSKT--GVKNIIIPDSF-TELGKSVFYGCTDLES 257 (394)
T ss_dssp ------------------TTTTTTCTTCCBCCCCTTCCE--ECTTTTTTC--CCCEEEECTTC-CEECSSTTTTCSSCCE
T ss_pred ------------------chhhccccccceeecCCCceE--eehhhcccC--CCceEEECCCc-eeccccccccccccee
Confidence 234455555555554443221 111122222 45555544322 2221 24455555555
Q ss_pred EeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCc
Q 035547 247 LDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNI 326 (482)
Q Consensus 247 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~ 326 (482)
+.+..+.. .+....|..+..++.+....+.+. ...|..+.+|+.+.+..+ ++...... +.++.+
T Consensus 258 ~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~-----~~~F~~~~~L~~i~l~~~-i~~I~~~a---------F~~c~~ 321 (394)
T 4fs7_A 258 ISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP-----EKTFYGCSSLTEVKLLDS-VKFIGEEA---------FESCTS 321 (394)
T ss_dssp EEECCTTC-EECSCTTTTCTTCCEEEECSSEEC-----TTTTTTCTTCCEEEECTT-CCEECTTT---------TTTCTT
T ss_pred EEcCCCcc-eeeccccccccccceeccCceeec-----cccccccccccccccccc-cceechhh---------hcCCCC
Confidence 55554432 223444555555555555444332 344555555665555443 22222211 244555
Q ss_pred ceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCC
Q 035547 327 FTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLM 382 (482)
Q Consensus 327 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 382 (482)
|+.+++..+ ++.+...+|.++.+|+.+++..+ ++..-..+|.++.+|+.+++..
T Consensus 322 L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 322 LVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred CCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 666665433 44455566666666666666655 5444455666666666666643
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=6.7e-15 Score=127.55 Aligned_cols=133 Identities=16% Similarity=0.077 Sum_probs=86.7
Q ss_pred cccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHH
Q 035547 238 LANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMM 317 (482)
Q Consensus 238 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 317 (482)
+..+++|++|++++|.+++. +......++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~----~~l~~l~~L~~L~Ls~N~l~~~~~~~~----- 84 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL----DGFPLLRRLKTLLVNNNRICRIGEGLD----- 84 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE----CCCCCCSSCCEEECCSSCCCEECSCHH-----
T ss_pred cCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc----cccccCCCCCEEECCCCcccccCcchh-----
Confidence 44456666666666666653 33222233677777777766654 245666777777777777765544322
Q ss_pred HHHhhcCCcceEEeCCCCcccccChH--hhhcCCCCCeeeccCCcCccccccc----ccCCCCCCEEeCCCCCcc
Q 035547 318 IIQLKIPNIFTSIDCSSNNFEGPMPE--EMGRFKSLYAPNMSHNALKGSIPSS----FGNLKQIESLDLLMNNLM 386 (482)
Q Consensus 318 ~~~~~~~~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~l~~N~l~ 386 (482)
..+++|++|++++|.++. +|. .+..+++|+.|++++|.++ .+|.. +..+++|+.||+++|...
T Consensus 85 ----~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 85 ----QALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ----HHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ----hcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 456777777777777753 444 6777888888888888887 45553 777888888888888654
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=4.4e-14 Score=122.49 Aligned_cols=113 Identities=16% Similarity=0.129 Sum_probs=82.2
Q ss_pred CCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhh-hcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEE
Q 035547 193 TYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLK-SLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVL 271 (482)
Q Consensus 193 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 271 (482)
++|+.|++++|++.+..+..+.... +|++|++++|.++.++. .+..+++|++|++++|.+++..+..|..+++|++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLT--QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCT--TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcc--cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEE
Confidence 3556666666666533333344444 66666666666666654 35778888888888888888777778888899999
Q ss_pred EcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCC
Q 035547 272 VFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLS 309 (482)
Q Consensus 272 ~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 309 (482)
++++|.+++.. +..+..+++|++|++++|.+.+..+
T Consensus 106 ~l~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 106 ALDTNQLKSVP--DGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp ECCSSCCSCCC--TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ECcCCcceEeC--HHHhcCCcccCEEEecCCCeeccCc
Confidence 99999888665 4567888999999999999887665
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=2.6e-14 Score=123.76 Aligned_cols=133 Identities=18% Similarity=0.127 Sum_probs=81.4
Q ss_pred CCCCCCCCEEEcccCcccccCChhhhhcC-CCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcCCC
Q 035547 116 LKNQSQLSFFYISNNQISGEIPNWIWEVG-GVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKATY 194 (482)
Q Consensus 116 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~ 194 (482)
+.++.+|++|++++|+++ .+|. +..+. . |++|++++|.++.+ ..+..+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~--L~~L~Ls~N~l~~~-------------------------~~l~~l~~ 65 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQ--FDAIDFSDNEIRKL-------------------------DGFPLLRR 65 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTC--CSEEECCSSCCCEE-------------------------CCCCCCSS
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCC--CCEEECCCCCCCcc-------------------------cccccCCC
Confidence 555666777777777666 3333 33332 4 66666666665553 23556667
Q ss_pred CCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhh--hcccCCCCCEEeCCCcccCCCcCh----hhhcCCCC
Q 035547 195 FQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLK--SLANCNMLQVLDLRNNHISDNFPC----WLRNAFSL 268 (482)
Q Consensus 195 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L 268 (482)
|++|++++|.+.+..+..+...+ +|++|++++|.++.+|. .+..+++|+.|++++|.++.. |. .+..+++|
T Consensus 66 L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 66 LKTLLVNNNRICRIGEGLDQALP--DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQV 142 (176)
T ss_dssp CCEEECCSSCCCEECSCHHHHCT--TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTC
T ss_pred CCEEECCCCcccccCcchhhcCC--CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCcc
Confidence 77777777777633333334444 67777777777766665 566677777777777777653 33 36667777
Q ss_pred cEEEcccCcccc
Q 035547 269 QVLVFRSNNFSE 280 (482)
Q Consensus 269 ~~L~L~~N~i~~ 280 (482)
++|++++|.+.+
T Consensus 143 ~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 143 RVLDFQKVKLKE 154 (176)
T ss_dssp SEETTEECCHHH
T ss_pred ceeCCCcCCHHH
Confidence 777777766543
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=6.3e-16 Score=136.83 Aligned_cols=161 Identities=15% Similarity=0.129 Sum_probs=106.8
Q ss_pred hhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCC
Q 035547 189 ICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSL 268 (482)
Q Consensus 189 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 268 (482)
+.....++.++++.+.+.+..| .++.+|..+..+++|++|++++|.+++ +| .+..+++|
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~-------------------~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L 72 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIP-------------------PIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENL 72 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCT-------------------TCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTC
T ss_pred HHhcccccCcchheeEeccccC-------------------cHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCC
Confidence 4555666666666666665444 334555666677777777777777766 44 66777777
Q ss_pred cEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccCh-Hhhhc
Q 035547 269 QVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMP-EEMGR 347 (482)
Q Consensus 269 ~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~ 347 (482)
++|++++|.++.. +..+..+++|++|++++|.+++. | . +..+++|++|++++|.+++..+ ..+..
T Consensus 73 ~~L~l~~n~l~~l---~~~~~~~~~L~~L~L~~N~l~~l-~-~---------~~~l~~L~~L~l~~N~i~~~~~~~~l~~ 138 (198)
T 1ds9_A 73 RILSLGRNLIKKI---ENLDAVADTLEELWISYNQIASL-S-G---------IEKLVNLRVLYMSNNKITNWGEIDKLAA 138 (198)
T ss_dssp CEEEEEEEEECSC---SSHHHHHHHCSEEEEEEEECCCH-H-H---------HHHHHHSSEEEESEEECCCHHHHHHHTT
T ss_pred CEEECCCCCcccc---cchhhcCCcCCEEECcCCcCCcC-C-c---------cccCCCCCEEECCCCcCCchhHHHHHhc
Confidence 7777777777643 33445556777777777777652 2 1 2356677788888888775333 46778
Q ss_pred CCCCCeeeccCCcCcccccc----------cccCCCCCCEEeCCCCCcc
Q 035547 348 FKSLYAPNMSHNALKGSIPS----------SFGNLKQIESLDLLMNNLM 386 (482)
Q Consensus 348 l~~L~~L~Ls~N~l~~~~~~----------~~~~l~~L~~L~l~~N~l~ 386 (482)
+++|++|++++|.+.+..|. .+..+++|+.|| +|+++
T Consensus 139 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 139 LDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp TTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 88888888888888765554 277788888887 56554
No 139
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.51 E-value=4.7e-13 Score=131.50 Aligned_cols=293 Identities=8% Similarity=-0.008 Sum_probs=183.9
Q ss_pred CCCCCchhccCCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCcccccCCCCcccccCCCCCcCCccccEEEcc
Q 035547 28 FTRPIPTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLNEIHLLSNNQFENQFPEISNMSSSFSKLRLA 106 (482)
Q Consensus 28 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p~~~~~~~~L~~L~l~ 106 (482)
++.+...+|.++.+|+.+.+..+ ++.+.... .++.+|+.+++.++ ++.+. ...
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~-----------~~a------------- 112 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIG-----------RCT------------- 112 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC-----------TTT-------------
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEcc-----------chh-------------
Confidence 45555667777888888888643 66555555 56777887777644 44332 111
Q ss_pred CCCCCCCCCCCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCCCCC-CCCCccEEEccCCcccccC
Q 035547 107 SSKPWVIPILKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQEPYH-ISGRTYSFSTINKSLIGFI 185 (482)
Q Consensus 107 ~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~~~~-~~~~l~~L~l~~n~~~~~~ 185 (482)
|.++++|+.+.+..+ +......+|.... +...... ..+..+....| .+.+|+.+.+.++ +....
T Consensus 113 ---------F~~c~~L~~i~~p~~-l~~i~~~aF~~~~---~~~~~~~-~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~ 177 (394)
T 4fs7_A 113 ---------FSGCYALKSILLPLM-LKSIGVEAFKGCD---FKEITIP-EGVTVIGDEAFATCESLEYVSLPDS-METLH 177 (394)
T ss_dssp ---------TTTCTTCCCCCCCTT-CCEECTTTTTTCC---CSEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEEC
T ss_pred ---------hcccccchhhcccCc-eeeecceeeeccc---ccccccC-ccccccchhhhcccCCCcEEecCCc-cceec
Confidence 333444444333322 2212222332221 1111111 11122222233 4455555555433 22334
Q ss_pred hhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcChhhhcC
Q 035547 186 PEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFPCWLRNA 265 (482)
Q Consensus 186 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 265 (482)
..+|..+.+|+.+++..+ +...-..++.... .|+.+.+..+.. .+........+|+.+.+..+ ++.+....|..+
T Consensus 178 ~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~--~L~~i~~~~~~~-~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~ 252 (394)
T 4fs7_A 178 NGLFSGCGKLKSIKLPRN-LKIIRDYCFAECI--LLENMEFPNSLY-YLGDFALSKTGVKNIIIPDS-FTELGKSVFYGC 252 (394)
T ss_dssp TTTTTTCTTCCBCCCCTT-CCEECTTTTTTCT--TCCBCCCCTTCC-EECTTTTTTCCCCEEEECTT-CCEECSSTTTTC
T ss_pred cccccCCCCceEEEcCCC-ceEeCchhhcccc--ccceeecCCCce-EeehhhcccCCCceEEECCC-ceeccccccccc
Confidence 567888999999999876 4423344454444 788887766543 34444555678999998754 344456778899
Q ss_pred CCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccccChHhh
Q 035547 266 FSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEM 345 (482)
Q Consensus 266 ~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 345 (482)
..++.+.+..+... .. ...|..+..++.+....+.+... .+..+.+|+.+.+..+ ++.+...+|
T Consensus 253 ~~l~~~~~~~~~~~-i~--~~~F~~~~~l~~~~~~~~~i~~~------------~F~~~~~L~~i~l~~~-i~~I~~~aF 316 (394)
T 4fs7_A 253 TDLESISIQNNKLR-IG--GSLFYNCSGLKKVIYGSVIVPEK------------TFYGCSSLTEVKLLDS-VKFIGEEAF 316 (394)
T ss_dssp SSCCEEEECCTTCE-EC--SCTTTTCTTCCEEEECSSEECTT------------TTTTCTTCCEEEECTT-CCEECTTTT
T ss_pred ccceeEEcCCCcce-ee--ccccccccccceeccCceeeccc------------cccccccccccccccc-cceechhhh
Confidence 99999999877543 33 57889999999998877654321 1257889999999765 666778899
Q ss_pred hcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCC
Q 035547 346 GRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMN 383 (482)
Q Consensus 346 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 383 (482)
.++.+|+.+++..+ ++..-..+|.++.+|+.+++..|
T Consensus 317 ~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 317 ESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred cCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 99999999999754 76566778999999999999776
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=1e-15 Score=135.53 Aligned_cols=154 Identities=19% Similarity=0.155 Sum_probs=87.7
Q ss_pred CCCCCEEEcccCcccccCCh------hhhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhhcC
Q 035547 119 QSQLSFFYISNNQISGEIPN------WIWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYICKA 192 (482)
Q Consensus 119 l~~L~~L~Ls~n~l~~~~~~------~~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l 192 (482)
...++.++++.+.+++..|. .+..++. |++|++++|.++.+ | .+..+
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~--L~~L~ls~n~l~~l------------------------~-~~~~l 69 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKA--CKHLALSTNNIEKI------------------------S-SLSGM 69 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTT--CSEEECSEEEESCC------------------------C-CHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCC--CCEEECCCCCCccc------------------------c-ccccC
Confidence 34555555566666555554 6666666 77777777776664 2 34555
Q ss_pred CCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCcC-hhhhcCCCCcEE
Q 035547 193 TYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNFP-CWLRNAFSLQVL 271 (482)
Q Consensus 193 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L 271 (482)
++|+.|++++|.+. .+|..+.... +|++|++++|.++.+| .+..+++|++|++++|.+++..+ ..+..+++|++|
T Consensus 70 ~~L~~L~l~~n~l~-~l~~~~~~~~--~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 70 ENLRILSLGRNLIK-KIENLDAVAD--TLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp TTCCEEEEEEEEEC-SCSSHHHHHH--HCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred CCCCEEECCCCCcc-cccchhhcCC--cCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEE
Confidence 56666666666655 4554444333 5666666666666555 45556666666666666655322 345566666666
Q ss_pred EcccCccccccCC--------CCCCCCCCCCCEEecCCCCCc
Q 035547 272 VFRSNNFSERISC--------PRNNVSWPLLKIVDLASNKFS 305 (482)
Q Consensus 272 ~L~~N~i~~~~~~--------~~~~~~l~~L~~L~Ls~n~l~ 305 (482)
++++|.+.+..+. ...+..+++|++|| +|.++
T Consensus 146 ~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 146 LLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 6666666554310 01245566666665 44444
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=2.3e-13 Score=116.98 Aligned_cols=109 Identities=20% Similarity=0.209 Sum_probs=73.2
Q ss_pred CCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhc
Q 035547 244 LQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKI 323 (482)
Q Consensus 244 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~ 323 (482)
.+++++++|.+++ +|..+ .++|++|+|++|.|++.. +..|..+++|++|+|
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~--~~~~~~l~~L~~L~L------------------------ 61 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLE--PGVFDRLTQLTRLDL------------------------ 61 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCC--TTTTTTCTTCSEEEC------------------------
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccC--hhhhcCcccCCEEEC------------------------
Confidence 4566666666665 33322 245666666666665544 344445555555555
Q ss_pred CCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCccccCC
Q 035547 324 PNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIP 390 (482)
Q Consensus 324 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 390 (482)
++|++++..+..|..+++|++|+|++|+|++..+..|..+++|+.|++++|++.+.++
T Consensus 62 ---------s~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 62 ---------DNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp ---------CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ---------CCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 5555554556667888999999999999986666678899999999999999986654
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=1.4e-12 Score=112.08 Aligned_cols=108 Identities=21% Similarity=0.167 Sum_probs=83.1
Q ss_pred CCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCch-hhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEc
Q 035547 195 FQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVV-LKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVF 273 (482)
Q Consensus 195 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 273 (482)
.+.+++++|.+. .+|..+. . ++++|++++|.++.+ |..|..+++|++|++++|++++..+..|..+++|++|+|
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~--~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--T--TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--T--TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcC-ccCccCC--C--CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 467888888887 5676553 2 788888888888777 456778888888888888888877777788888888888
Q ss_pred ccCccccccCCCCCCCCCCCCCEEecCCCCCcccCC
Q 035547 274 RSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLS 309 (482)
Q Consensus 274 ~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 309 (482)
++|++++.. +..+..+++|++|+|++|.+++..+
T Consensus 86 ~~N~l~~~~--~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 86 NDNQLKSIP--RGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CSSCCCCCC--TTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCCccCEeC--HHHhcCCCCCCEEEeCCCCCCCCch
Confidence 888888765 4567788888888888888776554
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=6.6e-13 Score=114.50 Aligned_cols=108 Identities=18% Similarity=0.181 Sum_probs=70.0
Q ss_pred CEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcC
Q 035547 245 QVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIP 324 (482)
Q Consensus 245 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 324 (482)
+.+++++|.++. +|..+. ++|++|+|++|.+++.. +..+..+++|++|
T Consensus 15 ~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L--------------------------- 62 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLE--PGVFDHLVNLQQL--------------------------- 62 (174)
T ss_dssp SEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCC--TTTTTTCTTCCEE---------------------------
T ss_pred cEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccC--HHHhcCCcCCCEE---------------------------
Confidence 456666666654 333222 45566666666655544 3444445555554
Q ss_pred CcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCccccCC
Q 035547 325 NIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMGKIP 390 (482)
Q Consensus 325 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 390 (482)
+|++|++++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|++++|++.+.++
T Consensus 63 ------~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 63 ------YFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp ------ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ------ECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 555555554555567788899999999999986555568889999999999998886544
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=1.2e-12 Score=112.88 Aligned_cols=105 Identities=17% Similarity=0.128 Sum_probs=60.8
Q ss_pred CEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCch-hhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcc
Q 035547 196 QVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVV-LKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFR 274 (482)
Q Consensus 196 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 274 (482)
+.+++++|.+. .+|..+. . +|++|++++|.++.+ |..|..+++|++|+|++|+++++.+..|..+++|++|+|+
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~--~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--T--DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--T--TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCC-ccCCCcC--C--CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 56666666665 5555442 2 566666666666555 3355566666666666666666545555566666666666
Q ss_pred cCccccccCCCCCCCCCCCCCEEecCCCCCccc
Q 035547 275 SNNFSERISCPRNNVSWPLLKIVDLASNKFSGR 307 (482)
Q Consensus 275 ~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 307 (482)
+|+|++.. +..+..+++|++|+|++|.+...
T Consensus 90 ~N~l~~l~--~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 90 DNHLKSIP--RGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SSCCCCCC--TTTTTTCTTCSEEECCSSCBCTT
T ss_pred CCccceeC--HHHhccccCCCEEEeCCCCcccc
Confidence 66665443 33455566666666666655543
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=9.1e-14 Score=134.95 Aligned_cols=168 Identities=13% Similarity=0.083 Sum_probs=88.0
Q ss_pred CCCCCEEeCCCCcccccCChhhhhc---CcCccceEEccCCCCCch--hhhcccCCCCCEEeCCCcccCCCcChhhh---
Q 035547 192 ATYFQVLDLSNNNLSGSIPACLITK---SSTTLGVLNLRRNNLGVV--LKSLANCNMLQVLDLRNNHISDNFPCWLR--- 263 (482)
Q Consensus 192 l~~L~~L~l~~n~l~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--- 263 (482)
++.|+.|++++|.++......+... ..++|++|++++|.++.. ......+++|+.|++++|.+++.....+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3456677777776654333333222 112666777777766432 11222345667777777766553333332
Q ss_pred --cCCCCcEEEcccCcccccc--CCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCcccc
Q 035547 264 --NAFSLQVLVFRSNNFSERI--SCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNNFEG 339 (482)
Q Consensus 264 --~l~~L~~L~L~~N~i~~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 339 (482)
..++|++|+|++|.++... .....+..+++|++|+|++|.+++... ......+..+++|++|+|++|.+++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~-----~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL-----ELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH-----HHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH-----HHHHHHHhcCCCcCeEECCCCCCCH
Confidence 3456677777776665321 001222445666667776666653211 1112334555666667777666664
Q ss_pred cC----hHhhhcCCCCCeeeccCCcCccc
Q 035547 340 PM----PEEMGRFKSLYAPNMSHNALKGS 364 (482)
Q Consensus 340 ~~----~~~~~~l~~L~~L~Ls~N~l~~~ 364 (482)
.. +..+...++|++|+|++|.|+..
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 32 23334456677777777776643
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=6.2e-13 Score=129.10 Aligned_cols=60 Identities=27% Similarity=0.281 Sum_probs=25.5
Q ss_pred ccceEEccCCCCCc-----hhhhcccCCCCCEEeCCCcccCCC----cChhhhcCCCCcEEEcccCccc
Q 035547 220 TLGVLNLRRNNLGV-----VLKSLANCNMLQVLDLRNNHISDN----FPCWLRNAFSLQVLVFRSNNFS 279 (482)
Q Consensus 220 ~L~~L~l~~n~l~~-----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~ 279 (482)
+|++|++++|.++. ++..+...++|++|++++|.+++. ++..+...++|++|+|++|.|+
T Consensus 184 ~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 44555555554421 223344444455555555544432 1122223344444444444443
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.30 E-value=3.1e-10 Score=111.37 Aligned_cols=312 Identities=11% Similarity=0.092 Sum_probs=152.2
Q ss_pred CCCCCC-CCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCc---ccCCCCCC-CCCCCCCEEECcCCCCcccccCCCCc
Q 035547 11 SIGTLE-NLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNH---FSGPIPSL-HKSRNLNYLDLSSNNLNEIHLLSNNQ 85 (482)
Q Consensus 11 ~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~-~~l~~L~~L~Ls~N~i~~l~~l~~n~ 85 (482)
+|.++. .|+.+.+.. .++.+...+|.++.+|+.+.+..|. ++.+.... ..+.+|+.+.+..+ ++.+.
T Consensus 58 aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~------ 129 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID------ 129 (394)
T ss_dssp TTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC------
T ss_pred hccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh------
Confidence 455553 467777654 3665556667777777777766553 44333333 45566666555432 33221
Q ss_pred ccccCCCCCcCCccccEEEccCCCCCCCCC--CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCC
Q 035547 86 FENQFPEISNMSSSFSKLRLASSKPWVIPI--LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQE 163 (482)
Q Consensus 86 l~~~~p~~~~~~~~L~~L~l~~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~ 163 (482)
...+....+|+.+.+..+ +..++. |.++..|+.+.+..+ ++.+..
T Consensus 130 -----~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~---------------------------~~~I~~ 176 (394)
T 4gt6_A 130 -----SEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS---------------------------VTAIEE 176 (394)
T ss_dssp -----TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT---------------------------CCEECT
T ss_pred -----hhhhhhhcccccccccce-eeeecccceecccccccccccce---------------------------eeEecc
Confidence 122222245555555322 233332 555555555555433 333333
Q ss_pred CCCCCCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcC------------cCccceEEccCCCC
Q 035547 164 PYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKS------------STTLGVLNLRRNNL 231 (482)
Q Consensus 164 ~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~------------~~~L~~L~l~~n~l 231 (482)
..|....++.+.+..+. ......+|..+..++......+... .....+.... ...+..+.+.. .+
T Consensus 177 ~aF~~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v 253 (394)
T 4gt6_A 177 RAFTGTALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GV 253 (394)
T ss_dssp TTTTTCCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TE
T ss_pred ccccccceeEEEECCcc-cccccchhhhccccceecccccccc-cccceeecccccccccccccccccccceEEcCC-cc
Confidence 33322333333333221 1122345555666665554443332 1111111000 00222222221 12
Q ss_pred Cch-hhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCH
Q 035547 232 GVV-LKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQ 310 (482)
Q Consensus 232 ~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 310 (482)
..+ ..+|..+..|+.+.+..+.. .+....|.++.+|+.+.+. +.++.+. ..+|.+|.+|+.+++..+ ++.....
T Consensus 254 ~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~--~~aF~~c~~L~~i~lp~~-v~~I~~~ 328 (394)
T 4gt6_A 254 ARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELP--ESVFAGCISLKSIDIPEG-ITQILDD 328 (394)
T ss_dssp EEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEEC--TTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred eEcccceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccC--ceeecCCCCcCEEEeCCc-ccEehHh
Confidence 222 23667777788887765433 3445667777788887775 3444444 567777788888877654 3322222
Q ss_pred HHHHHHHHHHhhcCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCC
Q 035547 311 KWLLTMMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNN 384 (482)
Q Consensus 311 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 384 (482)
. +.++.+|+++.+..+ ++.+...+|.++++|+.+++.++... . ..+.....|+.+.+..|.
T Consensus 329 a---------F~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-~--~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 329 A---------FAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-W--NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp T---------TTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-H--HTCBCCCCC---------
T ss_pred H---------hhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-h--hhhhccCCCCEEEeCCCC
Confidence 2 256667777776543 55556667777777777777776543 1 345566667766665543
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=2.7e-11 Score=116.77 Aligned_cols=104 Identities=18% Similarity=0.128 Sum_probs=61.7
Q ss_pred EEeCCCc-ccCCCcChhhhcCCCCcEEEccc-CccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhc
Q 035547 246 VLDLRNN-HISDNFPCWLRNAFSLQVLVFRS-NNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKI 323 (482)
Q Consensus 246 ~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~ 323 (482)
.++++++ .+++ +|. +..+.+|++|+|++ |.+++.. +..|..+++|++|+|++|.+++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~--~~~~~~l~~L~~L~l~~N~l~~----------------- 70 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLE--LRDLRGLGELRNLTIVKSGLRF----------------- 70 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEEC--GGGSCSCCCCSEEECCSSCCCE-----------------
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcC--hhHhccccCCCEEECCCCccce-----------------
Confidence 4567766 6665 455 66677777777775 7776654 3456666666666666665554
Q ss_pred CCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCccc
Q 035547 324 PNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMG 387 (482)
Q Consensus 324 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 387 (482)
..|..|.++++|+.|+|++|+|++..+..|..++ |+.|++++|++.+
T Consensus 71 ----------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 71 ----------------VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp ----------------ECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ----------------eCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 4455555566666666666666543333344333 6666666665553
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.20 E-value=4e-11 Score=115.56 Aligned_cols=111 Identities=17% Similarity=0.156 Sum_probs=89.4
Q ss_pred CEEeCCCC-cccccCChhhhhcCcCccceEEccC-CCCCchh-hhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEE
Q 035547 196 QVLDLSNN-NLSGSIPACLITKSSTTLGVLNLRR-NNLGVVL-KSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLV 272 (482)
Q Consensus 196 ~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 272 (482)
..++++++ ++. .+|. +.... +|++|+|++ |.++.++ ..|..+++|+.|+|++|++++..|..|.++++|++|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~--~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAE--NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCS--CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred CEEEcCCCCCCC-ccCC-CCCCC--CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence 45788887 787 6887 66655 899999986 9998887 4688899999999999999988888889999999999
Q ss_pred cccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHH
Q 035547 273 FRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWL 313 (482)
Q Consensus 273 L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 313 (482)
|++|+|++.. +..+..++ |+.|+|++|.+.....-.++
T Consensus 87 l~~N~l~~~~--~~~~~~~~-L~~l~l~~N~~~c~c~l~~~ 124 (347)
T 2ifg_A 87 LSFNALESLS--WKTVQGLS-LQELVLSGNPLHCSCALRWL 124 (347)
T ss_dssp CCSSCCSCCC--STTTCSCC-CCEEECCSSCCCCCGGGHHH
T ss_pred CCCCccceeC--HHHcccCC-ceEEEeeCCCccCCCccHHH
Confidence 9999998765 45555555 99999999988866554443
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.19 E-value=3.5e-09 Score=103.78 Aligned_cols=303 Identities=10% Similarity=0.083 Sum_probs=159.2
Q ss_pred cCCCCCCCCCEEeCCCCc---CCCCCchhccCCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcCCCCcccccCCCCc
Q 035547 10 DSIGTLENLTRVDLRSYN---FTRPIPTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSSNNLNEIHLLSNNQ 85 (482)
Q Consensus 10 ~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l~~l~~n~ 85 (482)
.+|.++++|+.+.+..|. ++.+...+|.++.+|+.+.+..+ ++.+.... ..+.+|+.+.+..+ ++.+.
T Consensus 81 ~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~------ 152 (394)
T 4gt6_A 81 NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVA------ 152 (394)
T ss_dssp TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEEC------
T ss_pred HHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeec------
Confidence 368899999999998764 67666779999999999988765 55555555 78999999999754 34332
Q ss_pred ccccCCCCCcCCccccEEEccCCCCCCCCC--CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCCC
Q 035547 86 FENQFPEISNMSSSFSKLRLASSKPWVIPI--LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQE 163 (482)
Q Consensus 86 l~~~~p~~~~~~~~L~~L~l~~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~~ 163 (482)
...+.....|+.+.+..+ +..++. |.+ .+|+.+.+..+-.. ....+|..... ++......+.......
T Consensus 153 -----~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~--l~~~~~~~~~~~~~~~ 222 (394)
T 4gt6_A 153 -----DGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFA--LSTITSDSESYPAIDN 222 (394)
T ss_dssp -----TTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTT--CCEEEECCSSSCBSSS
T ss_pred -----ccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccc--cceecccccccccccc
Confidence 233333478888888654 555555 554 67899888765443 55566666655 7777766665555443
Q ss_pred CCC-CCCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchhhhcccCC
Q 035547 164 PYH-ISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCN 242 (482)
Q Consensus 164 ~~~-~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~ 242 (482)
.++ .......-.. .+.....+..+.+... +...-..+|.... .|+.+.+..+....-..+|..++
T Consensus 223 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~--~L~~i~lp~~~~~I~~~aF~~c~ 288 (394)
T 4gt6_A 223 VLYEKSANGDYALI-----------RYPSQREDPAFKIPNG-VARIETHAFDSCA--YLASVKMPDSVVSIGTGAFMNCP 288 (394)
T ss_dssp CEEEECTTSCEEEE-----------ECCTTCCCSEEECCTT-EEEECTTTTTTCS--SCCEEECCTTCCEECTTTTTTCT
T ss_pred eeeccccccccccc-----------ccccccccceEEcCCc-ceEcccceeeecc--cccEEecccccceecCccccccc
Confidence 332 1000000000 0011112222222211 1111122222222 44555444333222223455555
Q ss_pred CCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhh
Q 035547 243 MLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLK 322 (482)
Q Consensus 243 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 322 (482)
+|+.+.+. +.++.+....|.++.+|+.+++..+ ++.+. ..+|.+|.+|+.+.+..+ ++...... +.
T Consensus 289 ~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~--~~aF~~C~~L~~i~ip~s-v~~I~~~a---------F~ 354 (394)
T 4gt6_A 289 ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQIL--DDAFAGCEQLERIAIPSS-VTKIPESA---------FS 354 (394)
T ss_dssp TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEEC--TTTTTTCTTCCEEEECTT-CCBCCGGG---------GT
T ss_pred ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEeh--HhHhhCCCCCCEEEECcc-cCEEhHhH---------hh
Confidence 66666654 3344444455666666666666543 33333 455666666666666433 33222222 24
Q ss_pred cCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcC
Q 035547 323 IPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNAL 361 (482)
Q Consensus 323 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 361 (482)
++.+|+.+++.++.... ..+....+|+.+.+..|.+
T Consensus 355 ~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 355 NCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 56666666666654431 3455566777777766544
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.10 E-value=8.4e-09 Score=100.51 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=29.8
Q ss_pred cCCcceEEeCCCCcccccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCC
Q 035547 323 IPNIFTSIDCSSNNFEGPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLL 381 (482)
Q Consensus 323 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 381 (482)
.+.+|+.+.+.++.++.+...+|.++.+|+.+.|..+ ++.+-..+|.++.+|+.+.+.
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 3444444444444444444555555566666666433 443334455566666655553
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.97 E-value=9.2e-10 Score=105.90 Aligned_cols=185 Identities=16% Similarity=0.127 Sum_probs=104.7
Q ss_pred hhhcCCCCCEEeCCCCccc---------ccCChhhhhcCcCccceEEccCCCCCchhhhcccCCCCCEEeCCCcccCCCc
Q 035547 188 YICKATYFQVLDLSNNNLS---------GSIPACLITKSSTTLGVLNLRRNNLGVVLKSLANCNMLQVLDLRNNHISDNF 258 (482)
Q Consensus 188 ~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 258 (482)
+...+++|+.|.+...... +.+...+... |+|+.|++++|.--.++. + .+++|+.|++..+.+....
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~--P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAM--PLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTC--TTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcC--CCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHH
Confidence 3455677777777554321 0122222222 378888887763223333 3 2678888888877765433
Q ss_pred Chhhh--cCCCCcEEEccc--Ccccccc---CCCCCC--CCCCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceE
Q 035547 259 PCWLR--NAFSLQVLVFRS--NNFSERI---SCPRNN--VSWPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTS 329 (482)
Q Consensus 259 ~~~~~--~l~~L~~L~L~~--N~i~~~~---~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~ 329 (482)
...+. .+++|++|+|+. |...+.. .....+ ..+++|++|+|++|.+.+..+..+. ....+++|++
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la------~a~~~~~L~~ 283 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL------ESDILPQLET 283 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHH------HCSSGGGCSE
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHH------hCccCCCCCE
Confidence 33343 578888888753 2211110 000111 3578889998888877643222111 1134678888
Q ss_pred EeCCCCcccccCh----HhhhcCCCCCeeeccCCcCcccccccccC-CCCCCEEeCCCCC
Q 035547 330 IDCSSNNFEGPMP----EEMGRFKSLYAPNMSHNALKGSIPSSFGN-LKQIESLDLLMNN 384 (482)
Q Consensus 330 L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~l~~N~ 384 (482)
|+|+.|.+.+..+ ..+..+++|+.|+|++|.++...-..+.. + ...+++++++
T Consensus 284 LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 284 MDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp EECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred EECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 8888888876433 33355688888888888877443333332 2 3457777765
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.84 E-value=4.2e-07 Score=88.36 Aligned_cols=299 Identities=10% Similarity=0.076 Sum_probs=170.4
Q ss_pred CCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCcccCCCCCCCCCCCCCEEECcCCCCcccccCCCCcccccCC
Q 035547 12 IGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSLHKSRNLNYLDLSSNNLNEIHLLSNNQFENQFP 91 (482)
Q Consensus 12 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~n~l~~~~p 91 (482)
+....+|+.+.+.. .++.+...+|.++.+|+.++|..+ ++.+....+.--+|+.+.+..+ ++.+. .
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c~l~~i~~~~~-l~~I~-----------~ 107 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADTKLQSYTGMER-VKKFG-----------D 107 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCCCCEEEECTT-CCEEC-----------T
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCCCCceEECCce-eeEec-----------c
Confidence 44456788888864 577766778888899999988654 6655555533336777776543 44332 1
Q ss_pred CCCcCCccccEEEccCCCCCCCCC--CCCCCCCCEEEcccCcccccCChhhhhcCCCCccEEeCCCCcccCCC-------
Q 035547 92 EISNMSSSFSKLRLASSKPWVIPI--LKNQSQLSFFYISNNQISGEIPNWIWEVGGVNLYFLNLSQNLLVSLQ------- 162 (482)
Q Consensus 92 ~~~~~~~~L~~L~l~~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L~~n~i~~~~------- 162 (482)
.++.. .+|+.+.+..+ +..+.. |.+. +++.+.+-.+ ++......|..... ++...+..+......
T Consensus 108 ~aF~~-~~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~--l~~~~~~~~~~~~~~~~~~~~~ 181 (379)
T 4h09_A 108 YVFQG-TDLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAEN--LEKIEVSSNNKNYVAENYVLYN 181 (379)
T ss_dssp TTTTT-CCCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTT--CCEEEECTTCSSEEEETTEEEE
T ss_pred ceecc-CCcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhccccc--ccccccccccceeecccceecc
Confidence 12222 35666666543 233333 4433 4555544332 33233444444444 555544433221111
Q ss_pred ------CCCCCCCCccEEEccCCcccccChhhhhcCCCCCEEeCCCCcccccCChhhhhcCcCccceEEccCCCCCchh-
Q 035547 163 ------EPYHISGRTYSFSTINKSLIGFIPEYICKATYFQVLDLSNNNLSGSIPACLITKSSTTLGVLNLRRNNLGVVL- 235 (482)
Q Consensus 163 ------~~~~~~~~l~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~- 235 (482)
..++....+..+.+... ........+..+..|+.+.+..+ +.......+.... .|+.+.+..+ ++.+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~--~L~~i~lp~~-v~~I~~ 256 (379)
T 4h09_A 182 KNKTILESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMK--ALDEIAIPKN-VTSIGS 256 (379)
T ss_dssp TTSSEEEECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCS--SCCEEEECTT-CCEECT
T ss_pred cccceeccccccccccccccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCc--cceEEEcCCC-ccEeCc
Confidence 01112223333333222 12223445666777777777654 2223333444444 7788877665 44553
Q ss_pred hhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCCCcccCCHHHHHH
Q 035547 236 KSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNKFSGRLSQKWLLT 315 (482)
Q Consensus 236 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 315 (482)
.+|..+.+|+.+.+..+ +..+....|.++.+|+.+.+.++.++.+. ..+|.+|.+|+.++|..+ ++......
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~--~~aF~~c~~L~~i~lp~~-l~~I~~~a---- 328 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLE--PRVFMDCVKLSSVTLPTA-LKTIQVYA---- 328 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEEC--TTTTTTCTTCCEEECCTT-CCEECTTT----
T ss_pred cccceeehhcccccccc-ceeccccccccccccccccccccccceeh--hhhhcCCCCCCEEEcCcc-ccEEHHHH----
Confidence 36777788888888654 55555567888888888888877777655 677888888888888654 44333322
Q ss_pred HHHHHhhcCCcceEEeCCCCcccccChHhhhcCC
Q 035547 316 MMIIQLKIPNIFTSIDCSSNNFEGPMPEEMGRFK 349 (482)
Q Consensus 316 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 349 (482)
+.++.+|+++.+..+ ++.+...+|.+.+
T Consensus 329 -----F~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 329 -----FKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp -----TTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred -----hhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 367788888888654 6656677777654
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.67 E-value=7.8e-09 Score=89.74 Aligned_cols=45 Identities=13% Similarity=0.040 Sum_probs=25.5
Q ss_pred hhhcccCCCCCEEeCCCc-ccCCC----cChhhhcCCCCcEEEcccCccc
Q 035547 235 LKSLANCNMLQVLDLRNN-HISDN----FPCWLRNAFSLQVLVFRSNNFS 279 (482)
Q Consensus 235 ~~~~~~l~~L~~L~Ls~N-~l~~~----~~~~~~~l~~L~~L~L~~N~i~ 279 (482)
...+...+.|++|+|++| .+.+. +...+...++|++|+|++|.|.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 345566677777777777 66542 2223334455666666655554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.63 E-value=1.4e-08 Score=88.14 Aligned_cols=86 Identities=19% Similarity=0.143 Sum_probs=54.3
Q ss_pred ccceEEccCC-CCCc-----hhhhcccCCCCCEEeCCCcccCCC----cChhhhcCCCCcEEEcccCcccccc--CCCCC
Q 035547 220 TLGVLNLRRN-NLGV-----VLKSLANCNMLQVLDLRNNHISDN----FPCWLRNAFSLQVLVFRSNNFSERI--SCPRN 287 (482)
Q Consensus 220 ~L~~L~l~~n-~l~~-----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~ 287 (482)
+|++|++++| .++. +...+...++|++|+|++|.+.+. +...+...++|++|+|++|.|.... .....
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~ 116 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence 7888888888 7733 445666677888888888887653 2334445567777777777776421 01223
Q ss_pred CCCCCCCCEEec--CCCCCc
Q 035547 288 NVSWPLLKIVDL--ASNKFS 305 (482)
Q Consensus 288 ~~~l~~L~~L~L--s~n~l~ 305 (482)
+...++|++|+| ++|.+.
T Consensus 117 L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCC
T ss_pred HHhCCCceEEEecCCCCCCC
Confidence 444556666666 556554
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.59 E-value=6.5e-08 Score=92.95 Aligned_cols=142 Identities=13% Similarity=0.020 Sum_probs=66.1
Q ss_pred hhhcCCCCccEEeCCCCcccCCCCCCCCCCCccEEEccCCcccccChhhhh--cCCCCCEEeCCC--CcccccCChhhhh
Q 035547 140 IWEVGGVNLYFLNLSQNLLVSLQEPYHISGRTYSFSTINKSLIGFIPEYIC--KATYFQVLDLSN--NNLSGSIPACLIT 215 (482)
Q Consensus 140 ~~~l~~~~L~~L~L~~n~i~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~--n~l~~~~~~~~~~ 215 (482)
+...+. |+.|++++|.-..+++ ...++|+.|++..+.+.......++ .+++|+.|+|+. +...+...
T Consensus 168 l~~~P~--L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~----- 238 (362)
T 2ra8_A 168 LDAMPL--LNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD----- 238 (362)
T ss_dssp HHTCTT--CCEEEEECCBTCBCCS--CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSC-----
T ss_pred HhcCCC--CcEEEEeCCCCceecc--ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchh-----
Confidence 334444 7777776652112221 1345666666666555443333333 466677766642 11111100
Q ss_pred cCcCccceEEccCCCCCchhhhc--ccCCCCCEEeCCCcccCCCcChhhh---cCCCCcEEEcccCcccccc--CCCCCC
Q 035547 216 KSSTTLGVLNLRRNNLGVVLKSL--ANCNMLQVLDLRNNHISDNFPCWLR---NAFSLQVLVFRSNNFSERI--SCPRNN 288 (482)
Q Consensus 216 ~~~~~L~~L~l~~n~l~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~L~~N~i~~~~--~~~~~~ 288 (482)
+..+...+ ..+++|++|++.+|.+.+..+..+. .+++|++|+|+.|.+.+.. .....+
T Consensus 239 ---------------~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L 303 (362)
T 2ra8_A 239 ---------------MNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHV 303 (362)
T ss_dssp ---------------GGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTH
T ss_pred ---------------HHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhc
Confidence 00111111 1345666666666555432222222 3456666666666665421 001122
Q ss_pred CCCCCCCEEecCCCCCc
Q 035547 289 VSWPLLKIVDLASNKFS 305 (482)
Q Consensus 289 ~~l~~L~~L~Ls~n~l~ 305 (482)
..+++|+.|+|++|.++
T Consensus 304 ~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 304 DKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHTTCSEEECCSBBCC
T ss_pred ccCCcceEEECCCCcCC
Confidence 34567777777777655
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=2.8e-07 Score=84.03 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=57.1
Q ss_pred EEccCCCCCchhhh----cccCCCCCEEeCCCcccCCC--cChhhhcCCCCcEEEcccCccccccCCCCCCCCCCCCCEE
Q 035547 224 LNLRRNNLGVVLKS----LANCNMLQVLDLRNNHISDN--FPCWLRNAFSLQVLVFRSNNFSERISCPRNNVSWPLLKIV 297 (482)
Q Consensus 224 L~l~~n~l~~~~~~----~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L 297 (482)
++++.|....++.. ...+++|+.|+|++|++++. ++..+..+++|+.|+|++|.|.+... ...+..+ +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~~l~~l-~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIKGL-KLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GGGGTTS-CCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh-hhhcccC-CcceE
Confidence 56666755444432 24578889999999988873 34667788888888888888886532 1223333 77777
Q ss_pred ecCCCCCcccCC
Q 035547 298 DLASNKFSGRLS 309 (482)
Q Consensus 298 ~Ls~n~l~~~~~ 309 (482)
+|++|.+.+..|
T Consensus 226 ~L~~Npl~~~~~ 237 (267)
T 3rw6_A 226 WLDGNSLCDTFR 237 (267)
T ss_dssp ECTTSTTGGGCS
T ss_pred EccCCcCccccC
Confidence 887777776544
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.20 E-value=1.7e-06 Score=78.80 Aligned_cols=59 Identities=24% Similarity=0.266 Sum_probs=27.3
Q ss_pred ccceEEccCCCCCchh---hhcccCCCCCEEeCCCcccCCCcChhhhcCC--CCcEEEcccCcccc
Q 035547 220 TLGVLNLRRNNLGVVL---KSLANCNMLQVLDLRNNHISDNFPCWLRNAF--SLQVLVFRSNNFSE 280 (482)
Q Consensus 220 ~L~~L~l~~n~l~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~L~~N~i~~ 280 (482)
+|+.|+|++|.++.++ ..+..+++|+.|+|++|.+.+. ..+..+. +|++|+|++|.+.+
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 4444444444443322 3334455555555555555542 1122222 55555555555543
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.77 E-value=2e-05 Score=67.93 Aligned_cols=101 Identities=18% Similarity=0.192 Sum_probs=46.2
Q ss_pred hhcccCCCCCEEeCCCcccCCC----cChhhhcCCCCcEEEcccCcccccc--CCCCCCCCCCCCCEEecCCCCCcccCC
Q 035547 236 KSLANCNMLQVLDLRNNHISDN----FPCWLRNAFSLQVLVFRSNNFSERI--SCPRNNVSWPLLKIVDLASNKFSGRLS 309 (482)
Q Consensus 236 ~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 309 (482)
.++..-+.|+.|+|++|.+.+. +.+.+..-..|++|+|+.|.|.... .....+..-+.|++|+|++|.... +.
T Consensus 64 ~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~-ig 142 (197)
T 1pgv_A 64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSV-LG 142 (197)
T ss_dssp HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCC-CC
T ss_pred HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcC-cC
Confidence 3444455666666666666532 2233334456666666666665321 011223344556666666442210 01
Q ss_pred HHHHHHHHHHHhhcCCcceEEeCCCCccc
Q 035547 310 QKWLLTMMIIQLKIPNIFTSIDCSSNNFE 338 (482)
Q Consensus 310 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 338 (482)
.-.......++...+.|+.|+++.|.+.
T Consensus 143 -~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 143 -NQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp -HHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred -HHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 0111112234445555666666655543
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.72 E-value=1.1e-05 Score=68.17 Aligned_cols=86 Identities=9% Similarity=0.025 Sum_probs=51.2
Q ss_pred CCCcEEEcccCccccccCCCCCCCCCCCCCEEecCCCC-CcccCCHHHHHHHHHHHhhc----CCcceEEeCCCCc-ccc
Q 035547 266 FSLQVLVFRSNNFSERISCPRNNVSWPLLKIVDLASNK-FSGRLSQKWLLTMMIIQLKI----PNIFTSIDCSSNN-FEG 339 (482)
Q Consensus 266 ~~L~~L~L~~N~i~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~----~~~L~~L~Ls~n~-l~~ 339 (482)
..|+.||++++.++... -..+..+++|+.|+|++|. +++..- ..+.. .++|++|+|++|. ++.
T Consensus 61 ~~L~~LDLs~~~Itd~G--L~~L~~~~~L~~L~L~~C~~ItD~gL---------~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIG--FDHMEGLQYVEKIRLCKCHYIEDGCL---------ERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCCCCGGG--GGGGTTCSCCCEEEEESCTTCCHHHH---------HHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCCccHHH--HHHhcCCCCCCEEEeCCCCccCHHHH---------HHHHhcccccCCCCEEEcCCCCcCCH
Confidence 35677777777665433 2344667777777777774 442110 11122 2357777777764 665
Q ss_pred cChHhhhcCCCCCeeeccCCc-Cc
Q 035547 340 PMPEEMGRFKSLYAPNMSHNA-LK 362 (482)
Q Consensus 340 ~~~~~~~~l~~L~~L~Ls~N~-l~ 362 (482)
..-..+..+++|++|+|++|. ++
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTCC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCC
Confidence 555566777888888888874 44
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.58 E-value=9.3e-05 Score=63.73 Aligned_cols=68 Identities=10% Similarity=0.044 Sum_probs=29.0
Q ss_pred hcccCCCCCEEeCCCcccCCC----cChhhhcCCCCcEEEcccC---cccccc--CCCCCCCCCCCCCEEecCCCCC
Q 035547 237 SLANCNMLQVLDLRNNHISDN----FPCWLRNAFSLQVLVFRSN---NFSERI--SCPRNNVSWPLLKIVDLASNKF 304 (482)
Q Consensus 237 ~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N---~i~~~~--~~~~~~~~l~~L~~L~Ls~n~l 304 (482)
.+..-+.|+.|+|+.|.|++. +.+.+..-..|++|+|++| .+.... .....+..-+.|+.|+++.|.+
T Consensus 93 aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 93 LIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 344444555555555555432 1122333344555555543 222110 0012233445666666665543
No 162
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.58 E-value=2.6e-05 Score=65.95 Aligned_cols=85 Identities=9% Similarity=0.011 Sum_probs=65.6
Q ss_pred CCCCCEEecCCCCCcccCCHHHHHHHHHHHhhcCCcceEEeCCCCc-ccccChHhhhcC----CCCCeeeccCCc-Cccc
Q 035547 291 WPLLKIVDLASNKFSGRLSQKWLLTMMIIQLKIPNIFTSIDCSSNN-FEGPMPEEMGRF----KSLYAPNMSHNA-LKGS 364 (482)
Q Consensus 291 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~Ls~N~-l~~~ 364 (482)
-..|+.||++++.+++..- ..+..+++|++|+|++|. +++..-..++.+ ++|++|+|++|. ++..
T Consensus 60 ~~~L~~LDLs~~~Itd~GL---------~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGF---------DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CCCEEEEEEESCCCCGGGG---------GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred CceEeEEeCcCCCccHHHH---------HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 3579999999998875432 224689999999999995 776555566664 479999999995 8754
Q ss_pred ccccccCCCCCCEEeCCCCC
Q 035547 365 IPSSFGNLKQIESLDLLMNN 384 (482)
Q Consensus 365 ~~~~~~~l~~L~~L~l~~N~ 384 (482)
--..+..+++|++|++++++
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHhcCCCCCEEECCCCC
Confidence 33457789999999999885
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.10 E-value=0.00086 Score=53.82 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=28.1
Q ss_pred eEEccCCCCC--chhhhcccCCCCCEEeCCCcccCCCcChhhhcCCCCcEEEcccCccc
Q 035547 223 VLNLRRNNLG--VVLKSLANCNMLQVLDLRNNHISDNFPCWLRNAFSLQVLVFRSNNFS 279 (482)
Q Consensus 223 ~L~l~~n~l~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 279 (482)
.++.+++.++ .+|..+ .++|++|+|++|+|+.+.+..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4455555554 555432 134555555555555555555555555555555555443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.90 E-value=0.0015 Score=52.33 Aligned_cols=57 Identities=16% Similarity=0.228 Sum_probs=36.9
Q ss_pred EEeCCCCccc-ccChHhhhcCCCCCeeeccCCcCcccccccccCCCCCCEEeCCCCCccc
Q 035547 329 SIDCSSNNFE-GPMPEEMGRFKSLYAPNMSHNALKGSIPSSFGNLKQIESLDLLMNNLMG 387 (482)
Q Consensus 329 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 387 (482)
.++.+++.++ ..+|..+ -++|++|+|++|+|+...++.|..+++|+.|+|++|++.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 4555555554 1233221 1357788888888876556667778888888888888873
No 165
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=80.88 E-value=1.6 Score=30.85 Aligned_cols=14 Identities=7% Similarity=-0.038 Sum_probs=7.1
Q ss_pred HHHHHHHHHHhhhh
Q 035547 466 KKWYNDLIYKFIYR 479 (482)
Q Consensus 466 ~~~~~~~~~~~~~~ 479 (482)
|+-|.+|.....+.
T Consensus 41 rrE~~kFEkE~~~~ 54 (79)
T 2knc_B 41 RKEFAKFEEERARA 54 (79)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 45555555444433
No 166
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=77.61 E-value=0.67 Score=27.57 Aligned_cols=21 Identities=19% Similarity=0.468 Sum_probs=9.3
Q ss_pred eeeehhhHHHHHHHHHHHHHh
Q 035547 441 FIAISIGFAVSFGAVVSPLMF 461 (482)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~ 461 (482)
+.+++++.++++.+++++++|
T Consensus 13 IAGiVvG~v~gv~li~~l~~~ 33 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVF 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 167
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=59.07 E-value=1 Score=26.03 Aligned_cols=6 Identities=0% Similarity=-0.131 Sum_probs=2.2
Q ss_pred HHHhhc
Q 035547 458 PLMFFV 463 (482)
Q Consensus 458 ~~~~~~ 463 (482)
+.+|++
T Consensus 27 ~~~~iR 32 (35)
T 1iij_A 27 VGILIK 32 (35)
T ss_dssp TTHHHH
T ss_pred hheEEe
Confidence 333333
No 168
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=56.20 E-value=9 Score=21.67 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHHHHHHhhchh
Q 035547 445 SIGFAVSFGAVVSPLMFFVHV 465 (482)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~ 465 (482)
+++.++++.++-+.++||+-+
T Consensus 13 i~gl~vif~~lg~tflywrgr 33 (40)
T 2l9u_A 13 IAGLVVIFMMLGGTFLYWRGR 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCceeEEEccc
Confidence 344444444444445554433
No 169
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=60.56 E-value=2.4 Score=24.89 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=7.1
Q ss_pred HHHHHHHhhchhHHHH
Q 035547 454 AVVSPLMFFVHVKKWY 469 (482)
Q Consensus 454 ~~~~~~~~~~~~~~~~ 469 (482)
+.++++++..+.|++|
T Consensus 23 isLIiLi~~w~qKPrY 38 (39)
T 2l6w_A 23 ISLIILIMLWQKKPRY 38 (39)
Confidence 3333344444444555
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=48.17 E-value=20 Score=26.38 Aligned_cols=45 Identities=11% Similarity=0.017 Sum_probs=23.2
Q ss_pred cCCCCCchhccCCCCCCEEeCCCCcccCCCCCC-CCCCCCCEEECcC
Q 035547 27 NFTRPIPTSMANLAQLFHMDFSSNHFSGPIPSL-HKSRNLNYLDLSS 72 (482)
Q Consensus 27 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~Ls~ 72 (482)
.++.+...+|.++.+|+.+.+-.+ ++.+.... ..+.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344444555666666666655443 33333333 4556666665554
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.73 E-value=30 Score=25.48 Aligned_cols=41 Identities=5% Similarity=0.047 Sum_probs=32.8
Q ss_pred cCCCCCCCCCEEeCCCCcCCCCCchhccCCCCCCEEeCCCCc
Q 035547 10 DSIGTLENLTRVDLRSYNFTRPIPTSMANLAQLFHMDFSSNH 51 (482)
Q Consensus 10 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 51 (482)
.+|.++..|+.+.+.. .++.+...+|.++.+|+.+.+....
T Consensus 14 ~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 14 SLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCSC
T ss_pred HHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCCC
Confidence 4688899999999975 5677667789999999999887653
No 172
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=37.10 E-value=2 Score=28.62 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=11.0
Q ss_pred ehhhHHHHHHHHHHHHHh
Q 035547 444 ISIGFAVSFGAVVSPLMF 461 (482)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~ 461 (482)
+++|.++++++++++.++
T Consensus 12 ivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 456666666666666555
No 173
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=33.35 E-value=38 Score=20.52 Aligned_cols=6 Identities=0% Similarity=-0.147 Sum_probs=2.2
Q ss_pred HHHHHH
Q 035547 453 GAVVSP 458 (482)
Q Consensus 453 ~~~~~~ 458 (482)
+++++.
T Consensus 20 ivliGl 25 (43)
T 2k9j_B 20 ILLIGL 25 (43)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 174
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=28.20 E-value=35 Score=19.37 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=7.4
Q ss_pred hhhHHHHHHHHHHHHHhh
Q 035547 445 SIGFAVSFGAVVSPLMFF 462 (482)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~ 462 (482)
+++-+++.+++.+.++|+
T Consensus 13 Vvgdi~~t~~i~~~vy~~ 30 (33)
T 2l34_A 13 VVGDLVLTVLIALAVYFL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHhhe
Confidence 333344444444444443
Done!