BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035548
(518 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
Proton:xylose Symporter Xyle Bound To D-Xylose
pdb|4GBZ|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
Proton:xylose Symporter Xyle Bound To D-Glucose
pdb|4GC0|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
Proton:xylose Symporter Xyle Bound To
6-Bromo-6-Deoxy-D-Glucose
Length = 491
Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 143/500 (28%), Positives = 227/500 (45%), Gaps = 70/500 (14%)
Query: 27 SIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTS 86
+++A GGL+FGYD + +G ++ V+ E N L +
Sbjct: 14 TLVATLGGLLFGYDTAVISGT-------VESLNTVFVAPQNLSESA----ANSLLGFCVA 62
Query: 87 SLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNC------------------L 128
S + I+ L +FGR+ +++ A+V F I + + L
Sbjct: 63 SALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYL 122
Query: 129 AQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLIN 188
A + + R+ GIGVG + P++I+E+AP RG L Q I G L +N
Sbjct: 123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVN 182
Query: 189 YGTSR------IHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRK 242
Y +R ++ GWR +PAL L+ + E+P L+ RGKQEQ LRK
Sbjct: 183 YFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRK 242
Query: 243 IRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSR------PQLICGTFIHMLQQLTG 296
I G AT+ IKH K R ++ G + + QQ G
Sbjct: 243 IMGNT----------LATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVG 292
Query: 297 INVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVXXXXXX 356
INVV++YAP +F+T+G ++ +LL +I G IN+ T++AI+ VDK GRK L +
Sbjct: 293 INVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQI------ 346
Query: 357 XXXXXXXGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLET 416
G+ + MF L T P V ++ + +VA FA SWGP+CW++ SEI+P
Sbjct: 347 ---IGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI 403
Query: 417 RNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTG---WL-----LISLIFSATM 468
R AV+ + + ++ F M+ K W + F G W+ +++ +F
Sbjct: 404 RGKALAIAVAAQWLANYFVSWTF-PMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKF 462
Query: 469 LPETKGIPIDEMVDRAWKKH 488
+PETKG ++E+ + W+
Sbjct: 463 VPETKGKTLEEL-EALWEPE 481
>pdb|1O9L|A Chain A, Succinate:coenzyme-A Transferase (Pig Heart)
pdb|1O9L|B Chain B, Succinate:coenzyme-A Transferase (Pig Heart)
pdb|1O9L|C Chain C, Succinate:coenzyme-A Transferase (Pig Heart)
pdb|1O9L|D Chain D, Succinate:coenzyme-A Transferase (Pig Heart)
pdb|1OOY|A Chain A, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
pdb|1OOY|B Chain B, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
pdb|3K6M|A Chain A, Dynamic Domains Of Succinyl-Coa:3-Ketoacid-Coenzyme A
Transferase From Pig Heart.
pdb|3K6M|D Chain D, Dynamic Domains Of Succinyl-Coa:3-Ketoacid-Coenzyme A
Transferase From Pig Heart.
pdb|3K6M|C Chain C, Dynamic Domains Of Succinyl-Coa:3-Ketoacid-Coenzyme A
Transferase From Pig Heart.
pdb|3K6M|B Chain B, Dynamic Domains Of Succinyl-Coa:3-Ketoacid-Coenzyme A
Transferase From Pig Heart
Length = 481
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 13/116 (11%)
Query: 120 LIGAILNCLAQNLGMLI--AGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLI 177
LIGA+L + L + AG + G+G+ ++ + IS G N F+
Sbjct: 34 LIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYV------GENAEFERQY 87
Query: 178 TVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQ 233
G L L GT RI GGA VPA + G +V+ S I+ K
Sbjct: 88 LAGELEVELTPQGT-----LAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKD 138
>pdb|2NRB|A Chain A, C28s Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
pdb|2NRB|B Chain B, C28s Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
pdb|2NRB|C Chain C, C28s Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
pdb|2NRB|D Chain D, C28s Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
Length = 481
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 13/116 (11%)
Query: 120 LIGAILNCLAQNLGMLI--AGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLI 177
LIGA+L + L + AG + G+G+ ++ + IS G N F+
Sbjct: 34 LIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYV------GENAEFERQY 87
Query: 178 TVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQ 233
G L L GT RI GGA VPA + G +V+ S I+ K
Sbjct: 88 LAGELEVELTPQGT-----LAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKD 138
>pdb|3OXO|A Chain A, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
pdb|3OXO|B Chain B, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
pdb|3OXO|C Chain C, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
pdb|3OXO|D Chain D, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
pdb|3OXO|E Chain E, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
pdb|3OXO|F Chain F, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
pdb|3OXO|G Chain G, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
pdb|3OXO|H Chain H, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
Length = 488
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 13/116 (11%)
Query: 120 LIGAILNCLAQNLGMLI--AGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLI 177
LIGA+L + L + AG + G+G+ ++ + IS G N F+
Sbjct: 34 LIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYV------GENAEFERQY 87
Query: 178 TVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQ 233
G L L GT RI GGA VPA + G +V+ S I+ K
Sbjct: 88 LAGELEVELTPQGT-----LAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKD 138
>pdb|2NRC|A Chain A, C28a Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
pdb|2NRC|B Chain B, C28a Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
pdb|2NRC|C Chain C, C28a Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
pdb|2NRC|D Chain D, C28a Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
Length = 481
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 13/116 (11%)
Query: 120 LIGAILNCLAQNLGMLI--AGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLI 177
LIGA+L + L + AG + G+G+ ++ + IS G N F+
Sbjct: 34 LIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYV------GENAEFERQY 87
Query: 178 TVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQ 233
G L L GT RI GGA VPA + G +V+ S I+ K
Sbjct: 88 LAGELEVELTPQGT-----LAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKD 138
>pdb|1OOZ|A Chain A, Deletion Mutant Of Succinyl-coa:3-ketoacid Coa Transferase
From Pig Heart
pdb|1OOZ|B Chain B, Deletion Mutant Of Succinyl-coa:3-ketoacid Coa Transferase
From Pig Heart
pdb|1OPE|A Chain A, Deletion Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
pdb|1OPE|B Chain B, Deletion Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
Length = 475
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 13/116 (11%)
Query: 120 LIGAILNCLAQNLGMLI--AGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLI 177
LIGA+L + L + AG + G+G+ ++ + IS G N F+
Sbjct: 34 LIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYV------GENAEFERQY 87
Query: 178 TVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQ 233
G L L GT RI GGA VPA + G +V+ S I+ K
Sbjct: 88 LAGELEVELTPQGT-----LAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKD 138
>pdb|1M3E|A Chain A, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
(Selenomethionine)
pdb|1M3E|B Chain B, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
(Selenomethionine)
pdb|1M3E|C Chain C, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
(Selenomethionine)
pdb|1M3E|D Chain D, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
(Selenomethionine)
Length = 481
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 13/116 (11%)
Query: 120 LIGAILNCLAQNLGMLI--AGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLI 177
LIGA+L + L + AG + G+G+ ++ + IS G N F+
Sbjct: 34 LIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRXISSYV------GENAEFERQY 87
Query: 178 TVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQ 233
G L L GT RI GGA VPA + G +V+ S I+ K
Sbjct: 88 LAGELEVELTPQGT-----LAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKD 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.141 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,116,041
Number of Sequences: 62578
Number of extensions: 547780
Number of successful extensions: 1226
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1218
Number of HSP's gapped (non-prelim): 12
length of query: 518
length of database: 14,973,337
effective HSP length: 103
effective length of query: 415
effective length of database: 8,527,803
effective search space: 3539038245
effective search space used: 3539038245
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)