Query 035548
Match_columns 518
No_of_seqs 496 out of 2676
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 05:55:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035548.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035548hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 2.9E-49 9.8E-54 395.5 42.4 445 20-489 7-482 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 3.1E-38 1.1E-42 312.1 23.4 395 20-465 23-430 (451)
3 3o7q_A L-fucose-proton symport 100.0 2E-36 6.8E-41 298.0 31.1 374 22-465 23-428 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 1.7E-31 5.8E-36 266.7 27.4 392 71-473 46-476 (491)
5 2gfp_A EMRD, multidrug resista 100.0 7.7E-33 2.6E-37 266.4 11.0 361 29-460 4-367 (375)
6 2xut_A Proton/peptide symporte 100.0 2.9E-27 1E-31 238.0 22.5 142 76-219 51-197 (524)
7 2cfq_A Lactose permease; trans 99.9 7.4E-28 2.5E-32 234.5 12.5 355 74-473 38-404 (417)
8 3o7q_A L-fucose-proton symport 99.4 2.9E-12 1E-16 125.3 14.9 154 283-447 28-182 (438)
9 1pw4_A Glycerol-3-phosphate tr 99.4 1.3E-11 4.4E-16 121.2 16.8 145 74-220 283-433 (451)
10 2cfq_A Lactose permease; trans 99.3 1.7E-11 5.9E-16 118.9 11.4 146 77-224 257-404 (417)
11 2gfp_A EMRD, multidrug resista 99.2 1.6E-11 5.6E-16 117.3 9.7 163 296-472 15-178 (375)
12 4aps_A DI-OR tripeptide H+ sym 99.2 1.1E-10 3.8E-15 115.9 16.0 150 296-459 28-186 (491)
13 2xut_A Proton/peptide symporte 99.2 3.1E-10 1E-14 113.7 17.7 156 297-465 28-194 (524)
14 4gc0_A D-xylose-proton symport 99.1 1.2E-09 4.2E-14 108.4 14.9 149 75-224 308-467 (491)
15 2g9p_A Antimicrobial peptide l 64.2 4.3 0.00015 19.5 1.6 14 98-111 2-15 (26)
16 4dve_A Biotin transporter BIOY 21.5 1.5E+02 0.0053 24.2 5.3 23 86-108 100-122 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=2.9e-49 Score=395.50 Aligned_cols=445 Identities=29% Similarity=0.511 Sum_probs=358.7
Q ss_pred hHHHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhh
Q 035548 20 TGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLA 99 (518)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~ 99 (518)
+++.+.++++++++.+++|||.++++.+. |.+.++|..+ .+...+.+..+.|++.+++.+|..+|++++
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~--~~~~~~~~~~---------~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~ 75 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTV--ESLNTVFVAP---------QNLSESAANSLLGFCVASALIGCIIGGALG 75 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTH--HHHHHHHTGG---------GCCCHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCC---------CCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888999999999999998654 6777776221 122224567788999999999999999999
Q ss_pred HHhhhhhccHHHHHHHHHHHHHHHHHHH------------------hhccHHHHHHHHHHhhhhhhcccchhhhHHHhcC
Q 035548 100 SIVCRKFGRKPTIQAASVFFLIGAILNC------------------LAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIA 161 (518)
Q Consensus 100 G~l~dr~Grr~~l~~~~~l~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 161 (518)
|+++||+|||+++.++.+++.+++++++ +++|+++++++|+++|++.|+..+...++++|+.
T Consensus 76 G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~ 155 (491)
T 4gc0_A 76 GYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELA 155 (491)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999998 4789999999999999999999999999999999
Q ss_pred CCCcchhHHhHHHHHHHHHHHHHHHHHhhccccC------CCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcCChhH
Q 035548 162 PPKYRGGLNICFQLLITVGILAANLINYGTSRIH------PYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQ 235 (518)
Q Consensus 162 ~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~ 235 (518)
|+++|++..++.+.+..+|.++++.++....... ..+||+.+.+..++.++.++..+++||+|+|+..+++.++
T Consensus 156 p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~ 235 (491)
T 4gc0_A 156 PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQ 235 (491)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHH
T ss_pred CHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhH
Confidence 9999999999999999999999998876554322 2479999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCC
Q 035548 236 GLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGS 315 (518)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 315 (518)
+.+.+++....+..+++..+.++..+.+++.. ... .....++..+......+..+.+...+..|.+.+.+..+.+.
T Consensus 236 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (491)
T 4gc0_A 236 AEGILRKIMGNTLATQAVQEIKHSLDHGRKTG-GRL---LMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAST 311 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-THH---HHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCH
T ss_pred HHHhHHHhcCCchhHHHHHHHHHHHHhhhhhh-hHH---HHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCc
Confidence 99999887765544443333322222222111 111 11233455666666777777788888999999999988888
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHh
Q 035548 316 NASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAG 395 (518)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (518)
..........++..+++.++++++.||+|||+.+..+.....++.+.++.... .....+..+....++..+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~~~ 382 (491)
T 4gc0_A 312 DIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY---------TQAPGIVALLSMLFYVAA 382 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH---------TTCCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh---------cccchHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999999888888888777665543 334455556666666777
Q ss_pred hhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhcc------c-hhhHHHHHHHHHHHHHHHHhc
Q 035548 396 FAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKM------R-WGIFFFFTGWLLISLIFSATM 468 (518)
Q Consensus 396 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~ 468 (518)
+..++.++.+.+.+|++|++.|+++.|+.+..+++++++++.+++.+.+.. + ...++++++++++..++.+++
T Consensus 383 ~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~ 462 (491)
T 4gc0_A 383 FAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKF 462 (491)
T ss_dssp HHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhe
Confidence 777788888899999999999999999999999999999998887664432 2 346778888888888888999
Q ss_pred ccCCCCCCHHHHHHHHhhcCc
Q 035548 469 LPETKGIPIDEMVDRAWKKHW 489 (518)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~ 489 (518)
+||||+|++||++ +.++++.
T Consensus 463 ~PETkg~tLeei~-~~f~~~~ 482 (491)
T 4gc0_A 463 VPETKGKTLEELE-ALWEPET 482 (491)
T ss_dssp CCCCTTCCHHHHG-GGTC---
T ss_pred ecCCCCCCHHHHH-HHhCCCC
Confidence 9999999999998 7776543
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=3.1e-38 Score=312.05 Aligned_cols=395 Identities=13% Similarity=0.048 Sum_probs=280.6
Q ss_pred hHHHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhh
Q 035548 20 TGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLA 99 (518)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~ 99 (518)
+++++.......++.+..+++...+++.. |.+ .+++ .+..+.|++.+++.++..++++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----------------~~~~-~s~~~~g~~~~~~~~~~~~~~~~~ 82 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAM--PYL-----------------VEQG-FSRGDLGFALSGISIAYGFSKFIM 82 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHH--HHT-----------------TSST-TCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-----------------HHHh-ccHhHHHHHHHHHHHHHHHHHHhH
Confidence 44556677777777888888776655332 222 4445 788899999999999999999999
Q ss_pred HHhhhhhccHHHHHHHHHHHHHHHHHHHh----hccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHH
Q 035548 100 SIVCRKFGRKPTIQAASVFFLIGAILNCL----AQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQL 175 (518)
Q Consensus 100 G~l~dr~Grr~~l~~~~~l~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 175 (518)
|+++||+|||++++++.++.+++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.
T Consensus 83 G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 162 (451)
T 1pw4_A 83 GSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNC 162 (451)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCc-chHHHHhhhHHHHHHH-HHhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHH
Q 035548 176 LITVGILAANLINYGTSRIHPYG-WRISLGGAAVPALFLL-LGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEY 253 (518)
Q Consensus 176 ~~~~G~~i~~~i~~~~~~~~~~~-wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 253 (518)
+..+|.+++|.+++.+.. ..| ||+.|++.+++.++.. +..+++||+|++...+.+.+.. .+.+.+.
T Consensus 163 ~~~~g~~~g~~~~~~l~~--~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 230 (451)
T 1pw4_A 163 AHNVGGGIPPLLFLLGMA--WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK----------NDYPDDY 230 (451)
T ss_dssp HHHHHHTSHHHHHHHHHH--HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC----------CC-----
T ss_pred HHHHHHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc----------ccccccc
Confidence 999999999999876543 246 9999999988877744 4556688877643211111100 0000000
Q ss_pred HHHHHHHHhhcccc-cchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHH-cCCCChHHHHHHHHHHHHHHH
Q 035548 254 AEICRATEISNLIK-HPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQT-MGYGSNASLLSAVISGTINVA 331 (518)
Q Consensus 254 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~ 331 (518)
+++.+++...+ ...++.++ .+. ++...+..+...........+.|.++++ +|++..+.+.......++.++
T Consensus 231 ---~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 303 (451)
T 1pw4_A 231 ---NEKAEQELTAKQIFMQYVLP---NKL-LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIP 303 (451)
T ss_dssp -----------CCTHHHHHHTSS---CHH-HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHH
T ss_pred ---hhhhhcccccccchHHHHHc---CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 00000000000 00122222 223 3333333333344456677788888876 799999999999999999999
Q ss_pred Hhhhhhhhhhcc--CChHHHHHhHHHHH-HHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeee
Q 035548 332 STLVAIVLVDKA--GRKILLVQAAIQMI-ICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLIS 408 (518)
Q Consensus 332 ~~~~~g~l~d~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (518)
+.++.+++.||+ +||+.+..+..+.. ++.+++... +..+.+.......+.+.+... ..+....+.
T Consensus 304 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~ 371 (451)
T 1pw4_A 304 GTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN-----------PAGNPTVDMICMIVIGFLIYG-PVMLIGLHA 371 (451)
T ss_dssp HHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC-----------CTTCHHHHHHHHHHHHHHHTH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh-----------cccCHHHHHHHHHHHHHHHhc-hHHHHHHHH
Confidence 999999999999 99988776665554 333332210 112333333344344433332 233445778
Q ss_pred cccCChhhhhhHHHHHHHHHHH-HHHHHHHHhHHHHhccchhhHHHH-HHHHHHHHHHH
Q 035548 409 SEIYPLETRNAGYFFAVSTNMV-FTFVIAQAFLSMLCKMRWGIFFFF-TGWLLISLIFS 465 (518)
Q Consensus 409 ~~~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 465 (518)
.|.+|++.|+++.|+.+....+ +..++|.+.|.+.+..++...+.. +++.++..++.
T Consensus 372 ~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 430 (451)
T 1pw4_A 372 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 430 (451)
T ss_dssp HHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999999886544444 44444443333
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=2e-36 Score=297.95 Aligned_cols=374 Identities=10% Similarity=0.036 Sum_probs=274.0
Q ss_pred HHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhhHH
Q 035548 22 QVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASI 101 (518)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~ 101 (518)
+.+.....+++..+..+++....++.. |.+.+++ |++..+.|++.+++.+++.++++++|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----------------g~s~~~~g~~~~~~~~~~~i~~~~~G~ 83 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILL--PQFQQAF-----------------TLTNFQAGLIQSAFYFGYFIIPIPAGI 83 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHS-----------------CCCSHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHc-----------------CCCHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 334455556666677888877666443 6666666 899999999999999999999999999
Q ss_pred hhhhhccHHHHHHHHHHHHHHHHHH---HhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHH
Q 035548 102 VCRKFGRKPTIQAASVFFLIGAILN---CLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLIT 178 (518)
Q Consensus 102 l~dr~Grr~~l~~~~~l~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 178 (518)
++||+|||++++++.++.+++.+++ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..
T Consensus 84 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 163 (438)
T 3o7q_A 84 LMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS 163 (438)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999 8899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCc------------------------chHHHHhhhHHHHHHHHHhhc--ccCChhhHHhcCC
Q 035548 179 VGILAANLINYGTSRIHPYG------------------------WRISLGGAAVPALFLLLGSCI--IVETPASLIERGK 232 (518)
Q Consensus 179 ~G~~i~~~i~~~~~~~~~~~------------------------wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~ 232 (518)
+|.++++.+++.+....... ||+.|++.+++.++..+..++ .||+++.. ++
T Consensus 164 ~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~ 240 (438)
T 3o7q_A 164 FGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HS 240 (438)
T ss_dssp HHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---CC
T ss_pred HHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---cc
Confidence 99999999987765222122 999998877776664444333 45544210 00
Q ss_pred hhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHH-HHHc
Q 035548 233 QEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVL-FQTM 311 (518)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 311 (518)
.+ ++++.+.++++.++++..+...+. .+...........+.|.+ +++.
T Consensus 241 ~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 289 (438)
T 3o7q_A 241 DA---------------------------KQGSFSASLSRLARIRHWRWAVLA----QFCYVGAQTACWSYLIRYAVEEI 289 (438)
T ss_dssp CS---------------------------STTSHHHHHHHHTTCSHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cc---------------------------cccchhhhHHHHHhChHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhcc
Confidence 00 000111233445544433332222 222233345566777777 7665
Q ss_pred -CCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHH
Q 035548 312 -GYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVC 390 (518)
Q Consensus 312 -g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (518)
|++..+++.......++.+++.++.+++.||++||+.+..+.++..++.+++... ...+ ......
T Consensus 290 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~-~~~~~~ 355 (438)
T 3o7q_A 290 PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-------------GGHV-GLIALT 355 (438)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------------CHHH-HHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc-------------CCcH-HHHHHH
Confidence 9999999999999999999999999999999999999988887776666555441 2222 233333
Q ss_pred HHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccc-hhhHHHHHHHHHHHHHHH
Q 035548 391 VFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMR-WGIFFFFTGWLLISLIFS 465 (518)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 465 (518)
+.+.+.+. ..+..+.+..|.+|++ ++.+.++.. .+.+++.++|.+.|.+.+..+ +...+.+.+++.+...+.
T Consensus 356 ~~g~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 356 LCSAFMSI-QYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHHHHHTT-HHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 34444333 3356667778999877 788888776 677999999999999999988 654444444444443333
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=1.7e-31 Score=266.70 Aligned_cols=392 Identities=13% Similarity=0.037 Sum_probs=251.8
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhh-hccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcc
Q 035548 71 DNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRK-FGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFG 149 (518)
Q Consensus 71 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr-~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 149 (518)
++++|++..+.+++.+++.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+..
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 34569999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHhcCCCCc--chhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcc-cCCh--
Q 035548 150 NQAVPLFISEIAPPKY--RGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCII-VETP-- 224 (518)
Q Consensus 150 ~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~p-- 224 (518)
.+...+++.|++|+++ |++++++++.+.++|..++|.+++.+... .|||+.|++.++..++..+..++. ++..
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 203 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA--AGYHVAFSLAAIGMFIGLLVYYFGGKKTLDP 203 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 9999999999999988 67788889999999999999998776543 589999999877766655444332 2111
Q ss_pred --hhHHhcCChhHHHHHHHh----------------hhCCccHHHHHHH--H-------HHHHHhhcccccchhhhcccC
Q 035548 225 --ASLIERGKQEQGLYTLRK----------------IRGVKDVEKEYAE--I-------CRATEISNLIKHPYRSLMKKS 277 (518)
Q Consensus 225 --~~~~~~~~~~~a~~~~~~----------------~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~ 277 (518)
+....+.+.++.++..+. ..+..+.+..... . .......+++..+..+ +.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~- 280 (491)
T 4aps_A 204 HYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTE--HL- 280 (491)
T ss_dssp CCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred cccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHH--HH-
Confidence 000111122222222221 0011110000000 0 0000000000000001 11
Q ss_pred ChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHH-cCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHH-----H
Q 035548 278 SRPQLICGTFIHMLQQLTGINVVMFYAPVLFQT-MGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLV-----Q 351 (518)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-----~ 351 (518)
....... ..+........+.....+.+.+.++ .+.+..+.+.......++.+++.++.+++.||++||+... .
T Consensus 281 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~ 359 (491)
T 4aps_A 281 RVVSYIP-LFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAV 359 (491)
T ss_dssp -CTTHHH-HHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHH
Confidence 1111111 1111122222233444555666655 4666566777788888999999999999999999986544 4
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHH
Q 035548 352 AAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVF 431 (518)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~ 431 (518)
+..+.+++.+++....... ......+.+.......+.+.+... ..+..+.++.|.+|++.|+++.|+.+....++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g 434 (491)
T 4aps_A 360 GLMFAGLSFLLMAIPGALY----GTSGKVSPLWLVGSWALVILGEML-ISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVG 434 (491)
T ss_dssp HHHHHHHHHTTTHHHHHHC----CCCTTCCTHHHHHHHHHHHHHHHT-TTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc----CCCCCccHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 5555555544444322110 000122333444444444444333 34566778899999999999999999999999
Q ss_pred HHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHhcccCCC
Q 035548 432 TFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETK 473 (518)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (518)
..+++.+.+.+.+......+..++.++++..++.+.+.++.+
T Consensus 435 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 435 SALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998887665556666666666666666666554433
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.98 E-value=7.7e-33 Score=266.42 Aligned_cols=361 Identities=14% Similarity=0.088 Sum_probs=260.9
Q ss_pred HHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhcc
Q 035548 29 IAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGR 108 (518)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Gr 108 (518)
.++++.++.+++...+.+.. |.+.+++ |.+..+.+++.+++.++..+++++.|+++||+||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----------------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~ 64 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAI--ADMARDL-----------------NVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGR 64 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHTTS-----------------SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHhhhh--HHHHHHc-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34455566666666665443 4554444 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHH
Q 035548 109 KPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLIN 188 (518)
Q Consensus 109 r~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~ 188 (518)
|+++..+.++.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.++
T Consensus 65 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 144 (375)
T 2gfp_A 65 RPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIG 144 (375)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhccccCCCcchHHHHhhhHHHHHHHH-HhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccc
Q 035548 189 YGTSRIHPYGWRISLGGAAVPALFLLL-GSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIK 267 (518)
Q Consensus 189 ~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (518)
+.+.. ..+||+.|++.++..++..+ ..+++||++++..+ +++.+
T Consensus 145 ~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~ 189 (375)
T 2gfp_A 145 GLLDT--MWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAP---------------------------------RTRLL 189 (375)
T ss_dssp HHSSC--HHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCC---------------------------------CCCTT
T ss_pred HHHHH--hccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcc---------------------------------cccHH
Confidence 77653 35899999998888777655 45567776642100 01112
Q ss_pred cchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHH-cCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCCh
Q 035548 268 HPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQT-MGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRK 346 (518)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~ 346 (518)
.++++.++++..+. ..+..+...........+.|.++++ .|+++.+.+.......++.+++.++.+++.||.+++
T Consensus 190 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~ 265 (375)
T 2gfp_A 190 TSYKTLFGNSGFNC----YLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL 265 (375)
T ss_dssp TCSTHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHhcCcchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23444444332222 2222222233445556666766655 788888999999999999999999999999998873
Q ss_pred HHHHHhHHH-HHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHH
Q 035548 347 ILLVQAAIQ-MIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAV 425 (518)
Q Consensus 347 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~ 425 (518)
. ..+... ...+...+..... ...+.+.......+.+.+.+. ..+....+..|..| +.|+++.|+.+
T Consensus 266 ~--~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p-~~~g~~~g~~~ 332 (375)
T 2gfp_A 266 M--WQSVICCLLAGLLMWIPDWF---------GVMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-FLAGTAGALVG 332 (375)
T ss_dssp H--HHHHHHHHHTSSSSSHHHHH---------HHHHHHHHHHHHHHHHHHHHH-TSSTTHHHHHTHHH-HHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHhhh---------ccccHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhCC-cccchHHHHHH
Confidence 2 222222 1222111111100 011223333344444444443 33556677889988 88999999999
Q ss_pred HHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHH
Q 035548 426 STNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLI 460 (518)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (518)
....++..+++.+.+.+.+..++...+.+.++.++
T Consensus 333 ~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 367 (375)
T 2gfp_A 333 GLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLL 367 (375)
T ss_dssp HHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 99999999999999999887666655555444433
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.95 E-value=2.9e-27 Score=237.96 Aligned_cols=142 Identities=15% Similarity=0.177 Sum_probs=128.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhHHhhhhh-ccHHHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHhhhhhhcccchh
Q 035548 76 YDNQYLQLFTSSLYLAAIVACFLASIVCRKF-GRKPTIQAASVFFLIGAILNCLAQ-NLGMLIAGRLSLGIGVGFGNQAV 153 (518)
Q Consensus 76 ~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~-Grr~~l~~~~~l~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~ 153 (518)
++..+.+++.+++.++..++++++|+++||+ |||+++.++.++.+++.+++++++ +++.++++|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 8999999999999999999999999999999 999999999999999999999999 99999999999999999999999
Q ss_pred hhHHHhcCCCCcchhHHhH---HHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhc
Q 035548 154 PLFISEIAPPKYRGGLNIC---FQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCI 219 (518)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 219 (518)
.+++.|++|+++|+++.+. .+.+.++|..++|.+++.+.. ..+||+.|++.++..++..+..++
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~--~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK--NFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH--TSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876666 889999999999999766643 358999999988887765555444
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.95 E-value=7.4e-28 Score=234.52 Aligned_cols=355 Identities=12% Similarity=0.048 Sum_probs=215.3
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHH---HHHhhccH-HHHHHHHHHhhhhhhcc
Q 035548 74 CKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAI---LNCLAQNL-GMLIAGRLSLGIGVGFG 149 (518)
Q Consensus 74 ~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~---~~~~~~~~-~~l~~~r~l~G~~~g~~ 149 (518)
+|++..+.|++.+++.++..++++++|+++||+|||++++++..+++++.. .+.+++.. ..+...+++.|++.+..
T Consensus 38 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 117 (417)
T 2cfq_A 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFC 117 (417)
T ss_dssp TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999999999999999999999999999998887765332 11222221 12345667777666655
Q ss_pred cchhhhHHHhcCCC--CcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhH
Q 035548 150 NQAVPLFISEIAPP--KYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASL 227 (518)
Q Consensus 150 ~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~ 227 (518)
.+.....+.++.++ ++|+...+....+..+|..++|.+++.+.. .+||+.|++.++..++..+..++.+|+|+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 194 (417)
T 2cfq_A 118 FNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT---INNQFVFWLGSGCALILAVLLFFAKTDAPSS 194 (417)
T ss_dssp HHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH---HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCS
T ss_pred HhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH---hchhHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 55555555555443 345666777777778888899988776653 3799999988877665555555555443210
Q ss_pred HhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHH
Q 035548 228 IERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVL 307 (518)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (518)
.+.++.. +. +.++....++++.++++..+... .. .+.....+.....+.|.+
T Consensus 195 ---~~~~~~~-------~~--------------~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~ 246 (417)
T 2cfq_A 195 ---ATVANAV-------GA--------------NHSAFSLKLALELFRQPKLWFLS---LY-VIGVSCTYDVFDQQFANF 246 (417)
T ss_dssp ---SCSSSSS-------SS--------------CCCCCCHHHHHHHTTCHHHHHHH---HH-HHHHHHHHHHHHHHHHHH
T ss_pred ---ccccccc-------cc--------------ccccccHHHHHHHhcCCchhhHH---HH-HHHHHHHHHHHHHHHHHH
Confidence 0000000 00 00000001122333332222211 11 111112223333445656
Q ss_pred HHHc-C---CCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhH
Q 035548 308 FQTM-G---YGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAK 383 (518)
Q Consensus 308 ~~~~-g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (518)
+.+. + .+....+.......++.+++.++.++++||++||+.+..+..+.++..+.+.+ ..+.+
T Consensus 247 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~-------------~~~~~ 313 (417)
T 2cfq_A 247 FTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF-------------ATSAL 313 (417)
T ss_dssp HHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-------------CCSHH
T ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-------------hccHH
Confidence 5442 2 22344567777778888999999999999999999888776666555433322 11222
Q ss_pred HHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHH-HHHHHHHHHHHHHHhHHHHhccchhh-HHHHHHHHHHH
Q 035548 384 VVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFA-VSTNMVFTFVIAQAFLSMLCKMRWGI-FFFFTGWLLIS 461 (518)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 461 (518)
..+....+...+... ..+..+.+..|.+|++.|+++.++. +....++++++|.+.|.+.+..++.. +...+++++++
T Consensus 314 ~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~ 392 (417)
T 2cfq_A 314 EVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGF 392 (417)
T ss_dssp HHHHHTTHHHHHHHH-HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 222222222222221 1123356789999999999999984 78888999999999999998777544 44444444555
Q ss_pred HHHHHhcccCCC
Q 035548 462 LIFSATMLPETK 473 (518)
Q Consensus 462 ~~~~~~~~~~~~ 473 (518)
.++.+...+|++
T Consensus 393 ~~~~~~~~~~~~ 404 (417)
T 2cfq_A 393 TLISVFTLSGPG 404 (417)
T ss_dssp HHHHTTSSCCSC
T ss_pred HHHHHhhhcCCC
Confidence 554455455433
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.40 E-value=2.9e-12 Score=125.29 Aligned_cols=154 Identities=9% Similarity=-0.029 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHH
Q 035548 283 ICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCA 362 (518)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (518)
+....+.++.............|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+.++.+++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 107 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL 107 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 33333334444444456677788888999999999999999999999999999999999999999999999988888877
Q ss_pred HHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHH
Q 035548 363 IGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSM 442 (518)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 442 (518)
...... ..+.+..++...+.+.+.+.. .+....++.|.+|++.|+.+.++.+....+|..+++.+.+.+
T Consensus 108 ~~~~~~----------~~~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 108 FWPAAE----------IMNYTLFLVGLFIIAAGLGCL-ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHH----------TTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHhccc----------cccHHHHHHHHHHHHhhHHHh-hhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 743221 233444444444444444433 345567889999999999999999999999999999999998
Q ss_pred H-hccc
Q 035548 443 L-CKMR 447 (518)
Q Consensus 443 ~-~~~~ 447 (518)
. +..+
T Consensus 177 ~~~~~~ 182 (438)
T 3o7q_A 177 ILSNVP 182 (438)
T ss_dssp HHTSSC
T ss_pred Hhcccc
Confidence 8 4443
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.36 E-value=1.3e-11 Score=121.21 Aligned_cols=145 Identities=16% Similarity=0.109 Sum_probs=125.7
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhh--ccHHHHHHHHHHHH-HHHHHHHhh--ccHHHHHHHHHHhhhhhhc
Q 035548 74 CKYDNQYLQLFTSSLYLAAIVACFLASIVCRKF--GRKPTIQAASVFFL-IGAILNCLA--QNLGMLIAGRLSLGIGVGF 148 (518)
Q Consensus 74 ~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~--Grr~~l~~~~~l~~-~~~~~~~~~--~~~~~l~~~r~l~G~~~g~ 148 (518)
+|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+. .+.+.+.+.-++.|++.+.
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 362 (451)
T 1pw4_A 283 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG 362 (451)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhc
Confidence 488999999999999999999999999999999 99999988887776 666666665 3788888889999999999
Q ss_pred ccchhhhHHHhcCCCCcchhHHhHHHHHHHH-HHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcc
Q 035548 149 GNQAVPLFISEIAPPKYRGGLNICFQLLITV-GILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCII 220 (518)
Q Consensus 149 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 220 (518)
..+...+++.|.+|+++|+++.++.+....+ |..++|.+.+.+... .||+..|++.++..++..+..+++
T Consensus 363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 363 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF--FGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 999999997766543 479999998888877766655544
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.27 E-value=1.7e-11 Score=118.86 Aligned_cols=146 Identities=12% Similarity=0.103 Sum_probs=121.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhH
Q 035548 77 DNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLF 156 (518)
Q Consensus 77 s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 156 (518)
+....+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566888888888999999999999999999999999998888888788888888888888888898877777778899
Q ss_pred HHhcCCCCcchhHHhH-HHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHh-hcccCCh
Q 035548 157 ISEIAPPKYRGGLNIC-FQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGS-CIIVETP 224 (518)
Q Consensus 157 i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p 224 (518)
+.|.+|++.|+++.++ ++....+|..++|.+++.+.. ..|++..|.+.+++.++..+.. ...+|.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~--~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE--SIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH--HSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999998 477888999999999876643 2478889988888877765544 4455544
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.24 E-value=1.6e-11 Score=117.29 Aligned_cols=163 Identities=10% Similarity=0.036 Sum_probs=119.7
Q ss_pred chhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCC
Q 035548 296 GINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTN 375 (518)
Q Consensus 296 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (518)
.........|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.++....
T Consensus 15 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--------- 85 (375)
T 2gfp_A 15 AQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--------- 85 (375)
T ss_dssp HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh---------
Confidence 34555566777788899999999999999999999999999999999999999998888888887776653
Q ss_pred CCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHH-
Q 035548 376 TMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFF- 454 (518)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 454 (518)
.+.+..+....+.+.+.+ ...+....++.|.+|+++|++++++.+....++..++|.+.+.+.+..++...+..
T Consensus 86 ----~~~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 160 (375)
T 2gfp_A 86 ----SSLTVLIAASAMQGMGTG-VGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL 160 (375)
T ss_dssp ----HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred ----ccHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence 223333333333333333 23345567789999999999999999999999999999999998877665544443
Q ss_pred HHHHHHHHHHHHhcccCC
Q 035548 455 TGWLLISLIFSATMLPET 472 (518)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~ 472 (518)
+....+..+......||+
T Consensus 161 ~~~~~~~~~~~~~~~~~~ 178 (375)
T 2gfp_A 161 LVLCAGVTFSMARWMPET 178 (375)
T ss_dssp HHHHHHHHCCCCCSSCCC
T ss_pred HHHHHHHHHHHHHHCccc
Confidence 333333333244445544
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.24 E-value=1.1e-10 Score=115.88 Aligned_cols=150 Identities=9% Similarity=0.088 Sum_probs=111.9
Q ss_pred chhHHHHhHHHHH-HH-----cCCCChHHHHHHHHHHHHHHHHhhhhhhhhhc-cCChHHHHHhHHHHHHHHHHHHHHHH
Q 035548 296 GINVVMFYAPVLF-QT-----MGYGSNASLLSAVISGTINVASTLVAIVLVDK-AGRKILLVQAAIQMIICQCAIGVILK 368 (518)
Q Consensus 296 ~~~~~~~~~~~~~-~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (518)
.++....+.+.++ ++ +|.+..+.++..+...++..++.++.|+++|| +|||+.+..+.++..++.+++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~--- 104 (491)
T 4aps_A 28 SYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL--- 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH---
Confidence 3444545555555 44 89999999999999999999999999999999 89999999988888877776654
Q ss_pred HhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhh--hhhHHHHHHHHHHHHHHHHHHHhHHHHhcc
Q 035548 369 MFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLET--RNAGYFFAVSTNMVFTFVIAQAFLSMLCKM 446 (518)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 446 (518)
..+.+..++...+.+.+.+.. .+....++.|.+|++. |+.+.++.+....+|..++|.+.+.+.+..
T Consensus 105 ----------~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 173 (491)
T 4aps_A 105 ----------PFGASALFGSIILIIIGTGFL-KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA 173 (491)
T ss_dssp ----------CCSTTHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ----------hhhHHHHHHHHHHHHHHHHhc-cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 123333344444444443332 3455677899999988 778888889999999999999999999988
Q ss_pred chhhHHHHHHHHH
Q 035548 447 RWGIFFFFTGWLL 459 (518)
Q Consensus 447 ~~~~~~~~~~~~~ 459 (518)
++...+...++..
T Consensus 174 g~~~~f~~~~~~~ 186 (491)
T 4aps_A 174 GYHVAFSLAAIGM 186 (491)
T ss_dssp CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 8665444444333
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.21 E-value=3.1e-10 Score=113.70 Aligned_cols=156 Identities=7% Similarity=-0.041 Sum_probs=112.8
Q ss_pred hhHHHHhHHHHH-HHcC------CCChHHHHHHHHHHHHHHHHhhhhhhhhhcc-CChHHHHHhHHHHHHHHHHHHHHHH
Q 035548 297 INVVMFYAPVLF-QTMG------YGSNASLLSAVISGTINVASTLVAIVLVDKA-GRKILLVQAAIQMIICQCAIGVILK 368 (518)
Q Consensus 297 ~~~~~~~~~~~~-~~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (518)
++....+.+.++ +++| ++..+.++..+...++..++.++.|+++||+ |||+.+..+.++..++.+++.+.
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-- 105 (524)
T 2xut_A 28 FYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-- 105 (524)
T ss_dssp HHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh--
Confidence 344455555555 5678 9999999999999999999999999999999 99999998888887777766552
Q ss_pred HhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHH---HHHHHHHHHHHHHHHhHHHHhc
Q 035548 369 MFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFF---AVSTNMVFTFVIAQAFLSMLCK 445 (518)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~---~~~~~~~~~~~~~~~~~~~~~~ 445 (518)
..+.+..++...+.+.+.+. ..+....++.|.+|++.|+++.+. .+....+|..++|.+.+.+.+.
T Consensus 106 ----------~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (524)
T 2xut_A 106 ----------EHSVQGFYTGLFLIALGSGG-IKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN 174 (524)
T ss_dssp ----------SSCHHHHHHHHHHHHHHHHT-THHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT
T ss_pred ----------cccHHHHHHHHHHHHHhccc-cchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 21333444444444444333 335566788999999999766555 8888999999999999999988
Q ss_pred cchhhHHHHHHHHHHHHHHH
Q 035548 446 MRWGIFFFFTGWLLISLIFS 465 (518)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~ 465 (518)
.++...+...++..+...+.
T Consensus 175 ~g~~~~f~~~~~~~~~~~~~ 194 (524)
T 2xut_A 175 FGAAVAFGIPGVLMFVATVF 194 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 77665444444433333333
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.08 E-value=1.2e-09 Score=108.36 Aligned_cols=149 Identities=15% Similarity=-0.004 Sum_probs=105.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhh----ccHHHHHHHH--HHhhhhhhc
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLA----QNLGMLIAGR--LSLGIGVGF 148 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~----~~~~~l~~~r--~l~G~~~g~ 148 (518)
+.+............+...++.++.+++.||+|||+.++.+.....++.+..+.. .+.+..++.- +..+++ ..
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 386 (491)
T 4gc0_A 308 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFA-MS 386 (491)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH-hH
Confidence 5566666777777888899999999999999999999999988888777665442 1122222222 222222 23
Q ss_pred ccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhcccc----CCCcchHHHHhhhHHHHHHHH-HhhcccCC
Q 035548 149 GNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRI----HPYGWRISLGGAAVPALFLLL-GSCIIVET 223 (518)
Q Consensus 149 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~----~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~ 223 (518)
..+....+.+|.+|.+.|+++.++......+|..+++.+...+... ...++...|++.++++++..+ .++++||+
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 4467778999999999999999999999999888887664333211 113456678787887777554 55678997
Q ss_pred h
Q 035548 224 P 224 (518)
Q Consensus 224 p 224 (518)
.
T Consensus 467 k 467 (491)
T 4gc0_A 467 K 467 (491)
T ss_dssp T
T ss_pred C
Confidence 5
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=64.15 E-value=4.3 Score=19.49 Aligned_cols=14 Identities=43% Similarity=0.662 Sum_probs=11.4
Q ss_pred hhHHhhhhhccHHH
Q 035548 98 LASIVCRKFGRKPT 111 (518)
Q Consensus 98 ~~G~l~dr~Grr~~ 111 (518)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999864
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=21.54 E-value=1.5e+02 Score=24.22 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhHHhhhhhcc
Q 035548 86 SSLYLAAIVACFLASIVCRKFGR 108 (518)
Q Consensus 86 s~~~l~~~i~~~~~G~l~dr~Gr 108 (518)
.-|.+|+.+++.+.|++.||..+
T Consensus 100 gGYLiGF~~aA~v~G~l~~~~~~ 122 (198)
T 4dve_A 100 GGYRIAWLFTPFLIGFFLKKLKI 122 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTG
T ss_pred hHHHHHHHHHHHHHHHHHHHccc
Confidence 34566677777777777777643
Done!