BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035550
(1385 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii
Effector Xcv3220 (Xopl)
Length = 328
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 108/256 (42%), Gaps = 35/256 (13%)
Query: 929 KSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLS--NCEGLV 986
K+ +LL+D R+ ++ L+S+ + DQ + RL +L+ + GL
Sbjct: 69 KATADLLEDATQPGRVALE----LRSVPLPQFPDQ-------AFRLSHLQHXTIDAAGLX 117
Query: 987 KLPQXXXXXXXXREIEIYKCSSLVSFP-EVALPSKLKKVKIRECDALKSLPEAWRCDTNS 1045
+LP + + + + L + P +A ++L+++ IR C L LPE T++
Sbjct: 118 ELPDTXQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPEPL-ASTDA 175
Query: 1046 SLEILNIEDCHSLT--YIAAVQLPPSLKQLEIYNCDNIRTLTVEEGIQCXXXXXXXXXXL 1103
S E + + SL + LP S I N N+++L +
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIRSLPAS-----IANLQNLKSLKIRNSPLSALGPAIHHLPK 230
Query: 1104 LEELHISSCQSLTCIFSKNELPATLESLEVGNLPSSLKSLVVWSCSKLESIAERLDNNTS 1163
LEEL + C +L +N P + G P LK L++ CS L ++ + T
Sbjct: 231 LEELDLRGCTAL-----RNYPP-----IFGGRAP--LKRLILKDCSNLLTLPLDIHRLTQ 278
Query: 1164 LETISIDSCGNLVSFP 1179
LE + + C NL P
Sbjct: 279 LEKLDLRGCVNLSRLP 294
Score = 38.1 bits (87), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 23/138 (16%)
Query: 526 LFKLQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEG 585
L LQ LR L I LP S +L+ L+ L + + + L +++ L L L L G
Sbjct: 182 LVNLQSLR---LEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238
Query: 586 CRRLKKLCADMGNLIKLHHLDNLDTGSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGIREL 645
C L+ G L L D +L +PL I +LT L+ L
Sbjct: 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL---------------- 282
Query: 646 KLLTHLRGTLNISKLENV 663
LRG +N+S+L ++
Sbjct: 283 ----DLRGCVNLSRLPSL 296
Score = 37.0 bits (84), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 26/182 (14%)
Query: 809 PLRS-GQGVEGFRKLRELHIISCSKLQGTFPEHLPALEMLVIGGCEELLVSVASLPALCK 867
PLR+ + +LREL I +C +L PE L + + G + LV++ SL +
Sbjct: 138 PLRALPASIASLNRLRELSIRACPELT-ELPEPLASTDA---SGEHQGLVNLQSL----R 189
Query: 868 IEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKQRIPKLEELEIKNIKNETHI 927
+E G + + ++ +L + S+ R++ GP +PKLEEL+++
Sbjct: 190 LEWTGIRSLP--ASIANLQNLKSLKIRNSPLSAL--GPAIHHLPKLEELDLRGCT----A 241
Query: 928 WKSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVK 987
+++ + LKRL + C L +L + + Q LE L L C L +
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ---------LEKLDLRGCVNLSR 292
Query: 988 LP 989
LP
Sbjct: 293 LP 294
Score = 36.6 bits (83), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 10/112 (8%)
Query: 527 FKLQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGC 586
F+L L+ ++ + ELPD+ L L L+ +R LP S+ L L L + C
Sbjct: 101 FRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160
Query: 587 RRLKKLCADMGN---------LIKLHHLDNLDTGSLEEMPLGIGKLTCLQTL 629
L +L + + L+ L L L+ + +P I L L++L
Sbjct: 161 PELTELPEPLASTDASGEHQGLVNLQSL-RLEWTGIRSLPASIANLQNLKSL 211
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 11/96 (11%)
Query: 1124 LPATLESLEVGNLPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPE--G 1181
LPA++ +L+ +LKSL + + S L ++ + + LE + + C L ++P G
Sbjct: 198 LPASIANLQ------NLKSLKIRN-SPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250
Query: 1182 GLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTI 1217
G L+ L + +C L LP +H LT L++L +
Sbjct: 251 GR--APLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 12/136 (8%)
Query: 534 VFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLC 593
LR + + PD L +L++ + + LP++ + L TL L L+ L
Sbjct: 85 ALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTL-ARNPLRALP 143
Query: 594 ADMGNLIKLHHLDNLDTGSLEEMPLGIGKLTC---LQTLCNFVVGKDSGSGIRELKLLTH 650
A + +L +L L L E+P + Q L N + +GIR L
Sbjct: 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP---- 199
Query: 651 LRGTLNISKLENVKDI 666
+I+ L+N+K +
Sbjct: 200 ----ASIANLQNLKSL 211
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 11/156 (7%)
Query: 477 IRHLSYIRGFCDGVQRFEDLHDINHLRTFLPVTLSKSSCGHLARSILPKLFKLQRLRVFS 536
I++L +R G + D+ + L + L+ + L + KL L+ L +
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 537 LRGYYISELPDS-FGDLRYLRYLNLSLTEIRTLPESV-NKLYNLHTLLLEGCRRLKKLCA 594
+ + LPD F L L YLNL+ ++++LP+ V +KL NL L L +L+ L
Sbjct: 119 NQ---LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL-SYNQLQSLPE 174
Query: 595 DMGNLIKLHHLDNLD--TGSLEEMPLGI-GKLTCLQ 627
G KL L +L L+ +P G+ +LT LQ
Sbjct: 175 --GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 92/239 (38%), Gaps = 57/239 (23%)
Query: 231 DDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQGVA-AIMGTAPAY------QLKKLSN 283
DDVW+ W +A +I++T R++ V ++MG P Y L K
Sbjct: 243 DDVWDS----W-----VLKAFDSQCQILLTTRDKSVTDSVMG--PKYVVPVESSLGKEKG 291
Query: 284 DDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKDDRREWEDV 343
+ LS+F L E I+ +C G PL +G LLR +R WE
Sbjct: 292 LEILSLFVN--------MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNR--WEYY 341
Query: 344 LSSKIWELQEERCDII------------PALRVSYYYLSAPLKQCFAYCSLFPKDYEFEE 391
L +LQ ++ I A+ +S L +K + S+ KD +
Sbjct: 342 LK----QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPT 397
Query: 392 EEIILLWCASGFLGHKESGNPIEDLGRKFFQELRSRSFFQQSSNNES-RFVMHDLVNDL 449
+ + +LW +ED+ QE ++S N +S R+ +HDL D
Sbjct: 398 KVLCILW--------DMETEEVEDI----LQEFVNKSLLFCDRNGKSFRYYLHDLQVDF 444
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 38.1 bits (87), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 92/239 (38%), Gaps = 57/239 (23%)
Query: 231 DDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQGVA-AIMGTAPAY------QLKKLSN 283
DDVW+ W +A +I++T R++ V ++MG P Y L K
Sbjct: 249 DDVWDS----W-----VLKAFDSQCQILLTTRDKSVTDSVMG--PKYVVPVESSLGKEKG 297
Query: 284 DDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKDDRREWEDV 343
+ LS+F L E I+ +C G PL +G LLR +R WE
Sbjct: 298 LEILSLFVN--------MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNR--WEYY 347
Query: 344 LSSKIWELQEERCDII------------PALRVSYYYLSAPLKQCFAYCSLFPKDYEFEE 391
L +LQ ++ I A+ +S L +K + S+ KD +
Sbjct: 348 LK----QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPT 403
Query: 392 EEIILLWCASGFLGHKESGNPIEDLGRKFFQELRSRSFFQQSSNNES-RFVMHDLVNDL 449
+ + +LW +ED+ QE ++S N +S R+ +HDL D
Sbjct: 404 KVLCILW--------DMETEEVEDI----LQEFVNKSLLFCDRNGKSFRYYLHDLQVDF 450
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 499 INHLRTFLPVTLSKSSCGHLARSILPKLFKLQRLRVFSLRGYYISELPDSFGDLRYLRYL 558
+ HL + LS + + S+L +L +LQ +++ G P +F L YLR L
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG--GQLAVVEPYAFRGLNYLRVL 301
Query: 559 NLSLTEIRTLPESV-NKLYNLHTLLLE 584
N+S ++ TL ESV + + NL TL+L+
Sbjct: 302 NVSGNQLTTLEESVFHSVGNLETLILD 328
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 32/141 (22%)
Query: 502 LRTFLPVTLSKSSCGHLARSILPKLFKLQRL--RVFSLRGYYISELPDSFGDLRYLRYLN 559
LR + LS + L+ S + LQRL R +L+ IS P F LR L L+
Sbjct: 429 LRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDIS--PSPFRPLRNLTILD 486
Query: 560 LSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKL----------------- 602
LS N + N++ LLEG L+ L NL +L
Sbjct: 487 LS----------NNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLS 536
Query: 603 H-HLDNLDTGSLEEMPLGIGK 622
H H+ NL++ L+E+P+G+ K
Sbjct: 537 HLHILNLESNGLDEIPVGVFK 557
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 43/64 (67%), Gaps = 5/64 (7%)
Query: 521 SILPKLFKLQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHT 580
S LPKL +++ + +L YI+ P++F +L L+YL +S T I+ LP+ V+K+++L
Sbjct: 76 SNLPKLHEIRIEKANNL--LYIN--PEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQK 130
Query: 581 LLLE 584
+LL+
Sbjct: 131 VLLD 134
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 43/64 (67%), Gaps = 5/64 (7%)
Query: 521 SILPKLFKLQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHT 580
S LPKL +++ + +L YI+ P++F +L L+YL +S T I+ LP+ V+K+++L
Sbjct: 76 SNLPKLHEIRIEKANNL--LYIN--PEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQK 130
Query: 581 LLLE 584
+LL+
Sbjct: 131 VLLD 134
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 521 SILPKLFKLQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHT 580
+I +FK L L G ++ELP +L LR L+LS + +LP + + L
Sbjct: 238 NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297
Query: 581 LLLEGCRRLKKLCADMGNLIKLHHL 605
+ L + GNL L L
Sbjct: 298 FYFFD-NMVTTLPWEFGNLCNLQFL 321
>pdb|3ZYV|A Chain A, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|B Chain B, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|C Chain C, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|D Chain D, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
Length = 1335
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 134 LRDDLRNDGEFSVIPIIGMG--------GLGKTTLAQLVYNDKQV-----QDHFDLKAWT 180
+R D+ DG FS+ P + +G GLG TL +L Y+ + V + + + T
Sbjct: 1179 IRTDIVMDGSFSINPAVDIGQIEGAFVQGLGLYTLEELKYSPEGVLYTRGPHQYKIASVT 1238
Query: 181 CVSDDFDVIRLTKS 194
+ ++F V LT +
Sbjct: 1239 DIPEEFHVSLLTPT 1252
>pdb|2DRJ|A Chain A, Xray Structure Of Alpha-2,38-Sialyltransferase Cstii F91y
Mutant
Length = 262
Score = 30.8 bits (68), Expect = 5.6, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 19/108 (17%)
Query: 367 YYLSAPLKQCFAYCSLFPKDY-------EFEEEEIILLWCASGFLGHKESGNPIEDLGRK 419
YYL K F SLF + Y + +E E L+ C++ H E+ N ++
Sbjct: 42 YYLGKKCKAVFYNPSLFFEQYYTLKHLIQNQEYETELIMCSNYNQAHLENENYVKTFYDY 101
Query: 420 FFQELRSRSFFQQSSNNESRFVMHDLVNDLAQWAAGEIYFTMEYTSEV 467
F FF+Q + + F H EIYF TS V
Sbjct: 102 FPDAHLGYDFFKQLKDFNAYFKFH------------EIYFNQRITSGV 137
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 528 KLQRLRVFSLRGYYISELPDS-FGDLRYLRYLNLSLTEIRTLPESV-NKLYNLHTLLLEG 585
+L L L G + LP+ F L L YLNLS ++++LP V +KL L L L
Sbjct: 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN- 108
Query: 586 CRRLKKLCADMGNLIKLHHLDNLD--TGSLEEMPLGI-GKLTCLQ 627
+L+ L G KL L +L L+ +P G+ +LT LQ
Sbjct: 109 TNQLQSL--PDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151
>pdb|2X63|A Chain A, Crystal Structure Of The Sialyltransferase Cst-Ii N51a In
Complex With Cmp
Length = 258
Score = 30.8 bits (68), Expect = 6.2, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 19/108 (17%)
Query: 367 YYLSAPLKQCFAYCSLFPKDY-------EFEEEEIILLWCASGFLGHKESGNPIEDLGRK 419
YYL K F SLF + Y + +E E L+ C++ H E+ N ++
Sbjct: 38 YYLGKKCKAVFYAPSLFFEQYYTLKHLIQNQEYETELIMCSNYNQAHLENENFVKTFYDY 97
Query: 420 FFQELRSRSFFQQSSNNESRFVMHDLVNDLAQWAAGEIYFTMEYTSEV 467
F FF+Q + + F H EIYF TS V
Sbjct: 98 FPDAHLGYDFFKQLKDFNAYFKFH------------EIYFNQRITSGV 133
>pdb|2X61|A Chain A, Crystal Structure Of The Sialyltransferase Cst-Ii In
Complex With Trisaccharide Acceptor And Cmp
pdb|2X61|B Chain B, Crystal Structure Of The Sialyltransferase Cst-Ii In
Complex With Trisaccharide Acceptor And Cmp
Length = 258
Score = 30.4 bits (67), Expect = 6.8, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 19/108 (17%)
Query: 367 YYLSAPLKQCFAYCSLFPKDY-------EFEEEEIILLWCASGFLGHKESGNPIEDLGRK 419
YYL K F SLF + Y + +E E L+ C++ H E+ N ++
Sbjct: 39 YYLGKKCKAVFYNPSLFFEQYYTLKHLIQNQEYETELIMCSNYNQAHLENENFVKTFYDY 98
Query: 420 FFQELRSRSFFQQSSNNESRFVMHDLVNDLAQWAAGEIYFTMEYTSEV 467
F FF+Q + + F H EIYF TS V
Sbjct: 99 FPDAHLGYDFFKQLKDFNAYFKFH------------EIYFNQRITSGV 134
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 529 LQRLRVFSLRGYYISE--LPDSFGDLRYLRYLNLSLTEIRTL-PESVNKLYNLHTL 581
L L V + G E LPD F +LR L +L+LS ++ L P + N L +L L
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204
>pdb|2X62|A Chain A, Crystal Structure Of The Sialyltransferase Cst-Ii Y81f In
Complex With Cmp
pdb|2X62|B Chain B, Crystal Structure Of The Sialyltransferase Cst-Ii Y81f In
Complex With Cmp
Length = 259
Score = 30.4 bits (67), Expect = 7.0, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 19/108 (17%)
Query: 367 YYLSAPLKQCFAYCSLFPKDY-------EFEEEEIILLWCASGFLGHKESGNPIEDLGRK 419
YYL K F SLF + Y + +E E L+ C++ H E+ N ++
Sbjct: 39 YYLGKKCKAVFYNPSLFFEQYYTLKHLIQNQEYETELIMCSNFNQAHLENENFVKTFYDY 98
Query: 420 FFQELRSRSFFQQSSNNESRFVMHDLVNDLAQWAAGEIYFTMEYTSEV 467
F FF+Q + + F H EIYF TS V
Sbjct: 99 FPDAHLGYDFFKQLKDFNAYFKFH------------EIYFNQRITSGV 134
>pdb|1RO7|A Chain A, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cmp-3fneuac.
pdb|1RO7|B Chain B, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cmp-3fneuac.
pdb|1RO7|C Chain C, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cmp-3fneuac.
pdb|1RO7|D Chain D, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cmp-3fneuac
Length = 259
Score = 30.4 bits (67), Expect = 7.6, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 19/108 (17%)
Query: 367 YYLSAPLKQCFAYCSLFPKDY-------EFEEEEIILLWCASGFLGHKESGNPIEDLGRK 419
YYL K F SLF + Y + +E E L+ C++ H E+ N ++
Sbjct: 39 YYLGKKCKAVFYNPSLFFEQYYTLKHLIQNQEYETELIXCSNYNQAHLENENFVKTFYDY 98
Query: 420 FFQELRSRSFFQQSSNNESRFVMHDLVNDLAQWAAGEIYFTMEYTSEV 467
F FF+Q + + F H EIYF TS V
Sbjct: 99 FPDAHLGYDFFKQLKDFNAYFKFH------------EIYFNQRITSGV 134
>pdb|1RO8|A Chain A, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cytidine-5'-monophosphate
pdb|1RO8|B Chain B, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cytidine-5'-monophosphate
Length = 262
Score = 30.4 bits (67), Expect = 8.0, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 19/108 (17%)
Query: 367 YYLSAPLKQCFAYCSLFPKDY-------EFEEEEIILLWCASGFLGHKESGNPIEDLGRK 419
YYL K F SLF + Y + +E E L+ C++ H E+ N ++
Sbjct: 42 YYLGKKCKAVFYNPSLFFEQYYTLKHLIQNQEYETELIXCSNYNQAHLENENFVKTFYDY 101
Query: 420 FFQELRSRSFFQQSSNNESRFVMHDLVNDLAQWAAGEIYFTMEYTSEV 467
F FF+Q + + F H EIYF TS V
Sbjct: 102 FPDAHLGYDFFKQLKDFNAYFKFH------------EIYFNQRITSGV 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,066,905
Number of Sequences: 62578
Number of extensions: 1655827
Number of successful extensions: 4322
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 4282
Number of HSP's gapped (non-prelim): 72
length of query: 1385
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1274
effective length of database: 8,027,179
effective search space: 10226626046
effective search space used: 10226626046
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)