Query 035550
Match_columns 1385
No_of_seqs 902 out of 5812
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 03:58:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035550.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035550hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.5E-79 3.2E-84 754.7 40.5 765 1-852 64-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.8E-65 8.2E-70 669.4 53.7 519 71-627 133-684 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.5E-41 3.3E-46 383.6 13.3 279 122-407 1-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 3.1E-38 6.8E-43 419.0 27.4 130 1138-1272 428-557 (968)
5 PLN00113 leucine-rich repeat r 100.0 1E-36 2.3E-41 404.5 27.7 227 972-1247 380-607 (968)
6 KOG0472 Leucine-rich repeat pr 99.9 1.7E-28 3.8E-33 255.9 -9.1 275 932-1273 245-539 (565)
7 KOG0472 Leucine-rich repeat pr 99.9 5.3E-28 1.2E-32 252.2 -11.7 399 522-1055 60-468 (565)
8 KOG0618 Serine/threonine phosp 99.9 6.8E-27 1.5E-31 269.9 -5.3 244 971-1273 240-487 (1081)
9 KOG4194 Membrane glycoprotein 99.9 1.2E-24 2.6E-29 237.7 4.4 110 1138-1248 341-453 (873)
10 KOG0618 Serine/threonine phosp 99.9 9.9E-26 2.2E-30 260.3 -6.9 101 527-629 42-142 (1081)
11 PLN03210 Resistant to P. syrin 99.9 6.9E-22 1.5E-26 261.0 23.3 314 972-1336 589-911 (1153)
12 KOG0444 Cytoskeletal regulator 99.9 2.8E-24 6.1E-29 235.7 -5.7 175 529-772 6-184 (1255)
13 KOG4194 Membrane glycoprotein 99.9 7.1E-23 1.5E-27 223.9 3.3 361 941-1348 80-446 (873)
14 KOG0444 Cytoskeletal regulator 99.8 2.6E-23 5.6E-28 228.2 -3.9 363 891-1334 9-378 (1255)
15 PRK15387 E3 ubiquitin-protein 99.6 3.8E-15 8.3E-20 180.9 16.4 257 973-1332 202-458 (788)
16 KOG4237 Extracellular matrix p 99.6 1.9E-16 4.1E-21 166.6 -2.9 101 532-633 69-173 (498)
17 PRK15387 E3 ubiquitin-protein 99.5 5.1E-14 1.1E-18 171.3 16.2 256 996-1353 201-457 (788)
18 KOG4237 Extracellular matrix p 99.5 3.6E-16 7.8E-21 164.6 -6.0 94 534-629 50-145 (498)
19 PRK15370 E3 ubiquitin-protein 99.4 4.4E-13 9.5E-18 164.7 10.9 95 972-1078 199-293 (754)
20 PRK15370 E3 ubiquitin-protein 99.4 7.6E-13 1.6E-17 162.7 10.8 75 972-1056 178-252 (754)
21 KOG0617 Ras suppressor protein 99.4 3.2E-14 6.9E-19 132.0 -3.2 84 526-610 29-112 (264)
22 PRK04841 transcriptional regul 99.3 4.5E-11 9.8E-16 158.9 23.7 293 117-454 14-332 (903)
23 KOG0617 Ras suppressor protein 99.3 2.8E-14 6.1E-19 132.3 -4.8 169 1138-1353 33-202 (264)
24 PRK00411 cdc6 cell division co 99.3 4.2E-10 9E-15 133.3 23.1 302 115-433 28-358 (394)
25 KOG4658 Apoptotic ATPase [Sign 99.2 1.2E-11 2.5E-16 154.7 6.4 102 529-631 544-649 (889)
26 TIGR02928 orc1/cdc6 family rep 99.2 4.3E-09 9.3E-14 123.3 24.9 302 116-433 14-350 (365)
27 cd00116 LRR_RI Leucine-rich re 99.1 7.4E-12 1.6E-16 144.5 -1.2 86 1138-1223 137-234 (319)
28 TIGR03015 pepcterm_ATPase puta 99.1 7.3E-09 1.6E-13 115.7 20.7 182 144-331 43-242 (269)
29 cd00116 LRR_RI Leucine-rich re 99.1 3.6E-11 7.9E-16 138.8 1.5 186 1138-1328 81-288 (319)
30 COG2909 MalT ATP-dependent tra 99.0 2.8E-08 6E-13 117.4 20.6 279 142-456 35-340 (894)
31 PRK00080 ruvB Holliday junctio 99.0 2.8E-09 6.2E-14 121.5 12.0 278 116-433 24-310 (328)
32 PF01637 Arch_ATPase: Archaeal 99.0 1.1E-09 2.3E-14 120.2 7.6 194 119-326 1-233 (234)
33 TIGR00635 ruvB Holliday juncti 98.9 3.9E-09 8.5E-14 120.0 12.0 277 117-433 4-289 (305)
34 PTZ00112 origin recognition co 98.9 1.1E-07 2.5E-12 112.9 21.1 302 116-433 754-1086(1164)
35 PF05729 NACHT: NACHT domain 98.8 1.1E-08 2.4E-13 105.1 8.4 143 145-293 1-162 (166)
36 KOG4341 F-box protein containi 98.7 1.4E-09 2.9E-14 116.9 -3.4 92 911-1011 138-231 (483)
37 COG3899 Predicted ATPase [Gene 98.6 3.7E-07 8E-12 115.6 14.7 309 119-452 2-384 (849)
38 KOG4341 F-box protein containi 98.6 2.1E-09 4.5E-14 115.5 -5.0 86 997-1082 139-230 (483)
39 COG4886 Leucine-rich repeat (L 98.6 4E-08 8.7E-13 116.6 5.0 103 525-629 111-214 (394)
40 KOG0532 Leucine-rich repeat (L 98.5 5.3E-09 1.1E-13 116.6 -3.6 105 522-629 90-194 (722)
41 KOG3207 Beta-tubulin folding c 98.5 1.3E-08 2.9E-13 110.1 -0.7 184 1138-1327 146-335 (505)
42 KOG1259 Nischarin, modulator o 98.5 4E-08 8.7E-13 100.4 2.4 103 1161-1273 283-385 (490)
43 PRK06893 DNA replication initi 98.5 2.8E-07 6.1E-12 98.7 8.8 153 144-328 39-204 (229)
44 KOG3207 Beta-tubulin folding c 98.5 1.1E-08 2.3E-13 110.8 -2.2 57 972-1030 121-183 (505)
45 PRK15386 type III secretion pr 98.5 5.8E-07 1.3E-11 100.5 11.1 174 1158-1364 48-223 (426)
46 PLN03150 hypothetical protein; 98.5 1.2E-07 2.7E-12 117.1 6.1 109 1139-1247 419-528 (623)
47 PF14580 LRR_9: Leucine-rich r 98.5 1.4E-07 3.1E-12 94.1 4.5 105 528-635 40-151 (175)
48 PRK13342 recombination factor 98.4 1.4E-06 2.9E-11 102.7 13.2 177 117-328 12-197 (413)
49 KOG1909 Ran GTPase-activating 98.4 1.6E-08 3.5E-13 106.6 -2.9 137 1137-1273 156-309 (382)
50 KOG0532 Leucine-rich repeat (L 98.4 1.8E-08 3.8E-13 112.6 -3.1 175 528-751 73-247 (722)
51 PF14580 LRR_9: Leucine-rich r 98.4 1.2E-07 2.5E-12 94.7 2.4 99 527-629 16-118 (175)
52 PF13855 LRR_8: Leucine rich r 98.4 3.3E-07 7.2E-12 74.7 4.6 58 530-587 1-60 (61)
53 COG2256 MGS1 ATPase related to 98.4 1.1E-06 2.5E-11 95.2 9.0 172 113-321 26-206 (436)
54 TIGR03420 DnaA_homol_Hda DnaA 98.4 1.6E-06 3.4E-11 94.0 10.2 170 122-329 22-203 (226)
55 KOG2120 SCF ubiquitin ligase, 98.3 5.6E-09 1.2E-13 106.8 -8.8 181 1138-1351 185-373 (419)
56 KOG1259 Nischarin, modulator o 98.3 1.5E-07 3.3E-12 96.3 0.7 86 523-610 277-362 (490)
57 PRK05564 DNA polymerase III su 98.3 9.1E-06 2E-10 92.2 14.6 180 117-327 4-190 (313)
58 PF13401 AAA_22: AAA domain; P 98.3 6.1E-07 1.3E-11 87.6 4.3 117 144-263 4-125 (131)
59 PRK14961 DNA polymerase III su 98.3 9.4E-06 2E-10 93.7 14.6 192 117-324 16-217 (363)
60 PF13173 AAA_14: AAA domain 98.3 8.8E-07 1.9E-11 85.4 4.9 119 145-286 3-127 (128)
61 PRK15386 type III secretion pr 98.3 3.8E-06 8.3E-11 94.1 10.4 54 1135-1196 69-122 (426)
62 PF13191 AAA_16: AAA ATPase do 98.3 7.4E-07 1.6E-11 93.3 4.7 47 118-167 1-47 (185)
63 PF05496 RuvB_N: Holliday junc 98.3 3.9E-06 8.4E-11 85.2 9.4 183 116-332 23-226 (233)
64 PRK12402 replication factor C 98.2 6.5E-06 1.4E-10 95.5 12.6 198 117-325 15-224 (337)
65 COG3903 Predicted ATPase [Gene 98.2 1.1E-06 2.3E-11 96.4 5.3 289 143-453 13-313 (414)
66 COG4886 Leucine-rich repeat (L 98.2 9.6E-07 2.1E-11 104.8 5.4 173 1138-1330 116-289 (394)
67 cd00009 AAA The AAA+ (ATPases 98.2 4E-06 8.7E-11 84.2 9.2 125 120-265 1-131 (151)
68 PRK14960 DNA polymerase III su 98.2 1.1E-05 2.3E-10 95.6 13.5 193 117-325 15-217 (702)
69 KOG1909 Ran GTPase-activating 98.2 1.5E-07 3.3E-12 99.4 -1.8 187 1159-1353 89-310 (382)
70 cd01128 rho_factor Transcripti 98.2 2.2E-06 4.8E-11 91.6 6.9 90 143-233 15-112 (249)
71 PRK04195 replication factor C 98.2 4.5E-05 9.7E-10 91.9 18.8 247 117-406 14-271 (482)
72 KOG2120 SCF ubiquitin ligase, 98.2 3.6E-08 7.7E-13 101.1 -6.5 158 1102-1273 185-349 (419)
73 PTZ00202 tuzin; Provisional 98.2 1.9E-05 4E-10 87.6 13.5 168 112-293 257-433 (550)
74 PRK07003 DNA polymerase III su 98.2 3.8E-05 8.2E-10 92.0 16.9 194 117-327 16-221 (830)
75 PRK14949 DNA polymerase III su 98.2 1.5E-05 3.2E-10 97.4 13.8 181 117-325 16-218 (944)
76 TIGR02903 spore_lon_C ATP-depe 98.2 1.9E-05 4.2E-10 96.8 15.1 173 117-295 154-367 (615)
77 PLN03025 replication factor C 98.2 1E-05 2.2E-10 92.0 11.8 180 117-322 13-195 (319)
78 PRK14963 DNA polymerase III su 98.2 3E-06 6.6E-11 100.5 7.7 198 117-324 14-214 (504)
79 PF13855 LRR_8: Leucine rich r 98.2 2.5E-06 5.3E-11 69.6 4.8 58 1163-1221 2-60 (61)
80 PLN03150 hypothetical protein; 98.2 1.8E-06 4E-11 106.9 5.9 92 531-622 419-512 (623)
81 COG1474 CDC6 Cdc6-related prot 98.1 3.8E-05 8.2E-10 87.3 15.7 205 118-327 18-238 (366)
82 PRK12323 DNA polymerase III su 98.1 1.9E-05 4.1E-10 93.2 12.9 194 117-326 16-224 (700)
83 PRK14956 DNA polymerase III su 98.1 1.2E-05 2.6E-10 92.6 10.7 194 117-322 18-217 (484)
84 KOG2028 ATPase related to the 98.1 2.5E-05 5.4E-10 82.9 12.0 127 143-292 161-292 (554)
85 PRK14957 DNA polymerase III su 98.1 2.2E-05 4.7E-10 93.3 12.9 184 117-328 16-222 (546)
86 PRK00440 rfc replication facto 98.1 3E-05 6.5E-10 89.2 13.7 180 117-324 17-200 (319)
87 PRK06645 DNA polymerase III su 98.1 3.6E-05 7.8E-10 91.0 14.2 192 117-324 21-226 (507)
88 PRK09376 rho transcription ter 98.1 7.3E-06 1.6E-10 90.7 7.1 90 143-233 168-265 (416)
89 PRK13341 recombination factor 98.0 1.7E-05 3.6E-10 98.0 10.8 168 117-321 28-211 (725)
90 PF12799 LRR_4: Leucine Rich r 98.0 5E-06 1.1E-10 61.5 3.4 40 530-569 1-40 (44)
91 PRK14962 DNA polymerase III su 98.0 3.8E-05 8.3E-10 90.5 12.4 187 117-331 14-223 (472)
92 PRK08727 hypothetical protein; 98.0 4.3E-05 9.3E-10 82.1 11.7 148 145-324 42-201 (233)
93 PRK08691 DNA polymerase III su 98.0 6.6E-05 1.4E-09 90.0 14.2 192 117-325 16-218 (709)
94 PRK07994 DNA polymerase III su 98.0 4.2E-05 9.1E-10 92.3 12.4 194 117-326 16-219 (647)
95 PRK05896 DNA polymerase III su 98.0 3.6E-05 7.8E-10 91.3 11.1 197 117-329 16-223 (605)
96 PRK09087 hypothetical protein; 98.0 7.7E-05 1.7E-09 79.3 12.7 141 144-326 44-194 (226)
97 PRK14964 DNA polymerase III su 98.0 7E-05 1.5E-09 87.7 13.4 180 117-323 13-213 (491)
98 TIGR02397 dnaX_nterm DNA polym 97.9 0.00011 2.3E-09 85.9 15.0 182 117-327 14-218 (355)
99 TIGR00678 holB DNA polymerase 97.9 0.00012 2.6E-09 76.3 13.7 91 223-323 95-187 (188)
100 PRK14951 DNA polymerase III su 97.9 8.8E-05 1.9E-09 89.5 14.0 193 117-325 16-223 (618)
101 PRK14958 DNA polymerase III su 97.9 8.6E-05 1.9E-09 88.6 13.6 178 117-325 16-218 (509)
102 KOG2227 Pre-initiation complex 97.9 0.00021 4.6E-09 79.4 15.2 214 115-331 148-376 (529)
103 PRK08084 DNA replication initi 97.9 7E-05 1.5E-09 80.6 11.5 152 144-327 45-209 (235)
104 PRK07471 DNA polymerase III su 97.9 0.00012 2.7E-09 83.4 14.0 196 116-328 18-239 (365)
105 PRK07940 DNA polymerase III su 97.9 0.00012 2.6E-09 84.2 13.8 194 117-327 5-213 (394)
106 PRK09112 DNA polymerase III su 97.9 6.2E-05 1.3E-09 85.3 10.8 198 116-328 22-241 (351)
107 PRK14969 DNA polymerase III su 97.9 0.00016 3.5E-09 87.0 14.8 180 117-327 16-221 (527)
108 PRK08903 DnaA regulatory inact 97.9 7.8E-05 1.7E-09 80.5 10.7 152 144-331 42-203 (227)
109 PF05621 TniB: Bacterial TniB 97.8 0.00017 3.7E-09 77.4 12.6 204 117-325 34-259 (302)
110 PRK14955 DNA polymerase III su 97.8 9.2E-05 2E-09 86.6 11.7 201 117-327 16-229 (397)
111 PRK09111 DNA polymerase III su 97.8 0.00016 3.5E-09 87.6 13.5 197 117-326 24-232 (598)
112 PRK11331 5-methylcytosine-spec 97.8 7.7E-05 1.7E-09 84.9 10.0 109 117-238 175-286 (459)
113 TIGR00767 rho transcription te 97.8 3.5E-05 7.6E-10 86.0 7.1 90 143-233 167-264 (415)
114 PRK14959 DNA polymerase III su 97.8 0.00022 4.8E-09 85.4 13.7 199 117-331 16-225 (624)
115 COG2255 RuvB Holliday junction 97.8 0.00048 1E-08 71.6 13.8 192 117-327 26-223 (332)
116 KOG0531 Protein phosphatase 1, 97.8 8E-06 1.7E-10 96.8 1.2 102 524-629 89-191 (414)
117 PRK05642 DNA replication initi 97.7 0.00017 3.6E-09 77.6 11.0 152 144-327 45-208 (234)
118 PRK07133 DNA polymerase III su 97.7 0.00034 7.4E-09 85.1 14.4 192 117-327 18-220 (725)
119 PF14516 AAA_35: AAA-like doma 97.7 0.002 4.3E-08 73.3 19.9 202 116-334 10-246 (331)
120 PRK14970 DNA polymerase III su 97.7 0.00033 7.1E-09 81.8 13.9 176 117-322 17-204 (367)
121 TIGR01242 26Sp45 26S proteasom 97.7 7.8E-05 1.7E-09 86.6 8.5 180 116-321 121-328 (364)
122 PF12799 LRR_4: Leucine Rich r 97.7 3E-05 6.4E-10 57.4 3.1 39 553-592 1-39 (44)
123 PRK14952 DNA polymerase III su 97.7 0.00041 8.9E-09 83.6 14.4 199 117-331 13-224 (584)
124 KOG2982 Uncharacterized conser 97.6 6.3E-05 1.4E-09 77.8 5.5 190 1136-1335 69-266 (418)
125 PRK08451 DNA polymerase III su 97.6 0.00061 1.3E-08 80.7 14.4 179 117-326 14-217 (535)
126 PRK14953 DNA polymerase III su 97.6 0.00087 1.9E-08 79.7 15.6 182 117-326 16-219 (486)
127 PRK14950 DNA polymerase III su 97.6 0.00032 6.9E-09 86.3 12.0 195 117-326 16-220 (585)
128 PRK14087 dnaA chromosomal repl 97.6 0.00059 1.3E-08 80.6 13.5 169 144-329 141-321 (450)
129 PRK14954 DNA polymerase III su 97.6 0.00026 5.6E-09 85.9 10.6 202 117-327 16-229 (620)
130 PF00308 Bac_DnaA: Bacterial d 97.6 0.00033 7.1E-09 74.3 10.2 160 143-325 33-206 (219)
131 CHL00181 cbbX CbbX; Provisiona 97.6 0.0012 2.7E-08 72.9 15.0 134 145-295 60-210 (287)
132 PRK06305 DNA polymerase III su 97.6 0.00055 1.2E-08 80.9 12.9 182 117-327 17-223 (451)
133 KOG2543 Origin recognition com 97.6 0.00034 7.3E-09 75.8 9.8 168 116-293 5-192 (438)
134 PRK14971 DNA polymerase III su 97.6 0.0006 1.3E-08 83.5 13.5 176 117-324 17-219 (614)
135 PHA02544 44 clamp loader, smal 97.6 0.00028 6E-09 80.8 10.0 147 117-291 21-170 (316)
136 PRK14948 DNA polymerase III su 97.5 0.00092 2E-08 81.8 14.7 196 117-326 16-221 (620)
137 PRK07764 DNA polymerase III su 97.5 0.0007 1.5E-08 85.1 13.9 189 117-324 15-218 (824)
138 KOG0989 Replication factor C, 97.5 0.00028 6.1E-09 74.1 8.4 182 117-320 36-223 (346)
139 TIGR03345 VI_ClpV1 type VI sec 97.5 0.00039 8.4E-09 88.7 11.4 155 117-294 187-363 (852)
140 TIGR02880 cbbX_cfxQ probable R 97.5 0.00098 2.1E-08 73.9 12.8 132 146-294 60-208 (284)
141 TIGR02881 spore_V_K stage V sp 97.5 0.00051 1.1E-08 75.6 10.6 49 118-166 7-64 (261)
142 PF05673 DUF815: Protein of un 97.5 0.0012 2.5E-08 68.6 12.1 109 113-249 23-132 (249)
143 TIGR02639 ClpA ATP-dependent C 97.5 0.00041 8.9E-09 88.0 10.6 155 117-294 182-358 (731)
144 PRK07399 DNA polymerase III su 97.5 0.0041 8.8E-08 69.7 17.1 197 117-327 4-221 (314)
145 KOG0531 Protein phosphatase 1, 97.5 1.7E-05 3.6E-10 94.2 -2.0 98 528-629 70-167 (414)
146 TIGR00362 DnaA chromosomal rep 97.5 0.0013 2.9E-08 77.7 14.1 159 144-325 136-308 (405)
147 PRK06647 DNA polymerase III su 97.4 0.0022 4.9E-08 77.5 15.3 193 117-325 16-218 (563)
148 PRK03992 proteasome-activating 97.4 0.00032 7E-09 81.6 7.7 159 117-296 131-317 (389)
149 KOG1859 Leucine-rich repeat pr 97.4 7.1E-06 1.5E-10 94.7 -5.8 105 1138-1247 187-292 (1096)
150 PRK14965 DNA polymerase III su 97.4 0.0015 3.4E-08 79.8 13.7 195 117-327 16-221 (576)
151 PRK12422 chromosomal replicati 97.4 0.0015 3.2E-08 76.9 12.8 153 144-319 141-305 (445)
152 PRK06620 hypothetical protein; 97.4 0.00067 1.5E-08 71.5 9.0 130 145-322 45-184 (214)
153 KOG1859 Leucine-rich repeat pr 97.4 1E-05 2.2E-10 93.5 -5.1 62 554-618 165-226 (1096)
154 KOG4579 Leucine-rich repeat (L 97.3 4E-05 8.7E-10 69.9 -0.7 93 525-619 48-141 (177)
155 PRK05563 DNA polymerase III su 97.3 0.003 6.6E-08 76.8 15.0 192 117-324 16-217 (559)
156 CHL00095 clpC Clp protease ATP 97.3 0.00092 2E-08 85.9 11.1 156 117-293 179-353 (821)
157 PRK14088 dnaA chromosomal repl 97.3 0.001 2.2E-08 78.5 10.6 160 144-325 130-303 (440)
158 KOG4579 Leucine-rich repeat (L 97.3 2.7E-05 5.8E-10 71.0 -2.0 98 530-629 27-128 (177)
159 PRK14086 dnaA chromosomal repl 97.2 0.0023 5E-08 76.4 12.3 155 144-321 314-482 (617)
160 PTZ00361 26 proteosome regulat 97.2 0.0011 2.4E-08 77.1 8.7 157 118-295 184-368 (438)
161 PRK00149 dnaA chromosomal repl 97.1 0.0025 5.5E-08 76.3 11.9 159 144-325 148-320 (450)
162 PRK05707 DNA polymerase III su 97.1 0.0049 1.1E-07 69.4 13.1 97 223-327 105-203 (328)
163 TIGR03346 chaperone_ClpB ATP-d 97.1 0.0022 4.8E-08 82.7 11.7 45 117-167 173-217 (852)
164 TIGR03689 pup_AAA proteasome A 97.1 0.003 6.6E-08 74.5 11.4 167 117-294 182-378 (512)
165 COG5238 RNA1 Ran GTPase-activa 97.1 8.1E-05 1.8E-09 76.0 -1.4 88 523-610 23-130 (388)
166 KOG0741 AAA+-type ATPase [Post 97.1 0.012 2.5E-07 66.7 14.9 149 142-317 536-704 (744)
167 TIGR00602 rad24 checkpoint pro 97.1 0.0015 3.1E-08 79.4 8.8 51 116-167 83-133 (637)
168 PRK11034 clpA ATP-dependent Cl 97.1 0.0021 4.6E-08 80.3 10.4 156 118-294 187-362 (758)
169 PF00004 AAA: ATPase family as 97.1 0.00056 1.2E-08 66.7 4.4 21 147-167 1-21 (132)
170 PRK08116 hypothetical protein; 97.0 0.0012 2.7E-08 72.2 7.1 104 145-264 115-221 (268)
171 PTZ00454 26S protease regulato 97.0 0.0042 9.2E-08 71.9 11.5 178 117-320 145-350 (398)
172 COG3267 ExeA Type II secretory 97.0 0.01 2.3E-07 61.4 12.7 178 144-329 51-247 (269)
173 smart00382 AAA ATPases associa 97.0 0.002 4.4E-08 63.9 7.6 87 145-236 3-90 (148)
174 KOG0991 Replication factor C, 97.0 0.0036 7.8E-08 62.8 8.9 44 117-166 27-70 (333)
175 COG0593 DnaA ATPase involved i 97.0 0.0035 7.5E-08 71.1 10.0 164 143-324 112-287 (408)
176 PRK10865 protein disaggregatio 96.9 0.0049 1.1E-07 79.2 12.5 45 117-167 178-222 (857)
177 KOG1947 Leucine rich repeat pr 96.9 9.1E-05 2E-09 91.2 -3.8 84 1257-1359 357-445 (482)
178 PRK08118 topology modulation p 96.8 0.0005 1.1E-08 69.4 1.9 34 146-179 3-37 (167)
179 PF04665 Pox_A32: Poxvirus A32 96.8 0.0022 4.7E-08 67.5 6.3 35 146-182 15-49 (241)
180 PRK06090 DNA polymerase III su 96.8 0.053 1.1E-06 60.5 17.3 178 124-327 10-201 (319)
181 COG0542 clpA ATP-binding subun 96.8 0.0023 5E-08 78.0 7.2 127 116-251 490-620 (786)
182 PRK10536 hypothetical protein; 96.8 0.0048 1.1E-07 65.1 8.6 134 118-264 56-213 (262)
183 COG0466 Lon ATP-dependent Lon 96.8 0.0021 4.6E-08 75.8 6.4 166 116-294 322-508 (782)
184 PRK08769 DNA polymerase III su 96.8 0.021 4.5E-07 63.7 14.0 96 223-328 112-209 (319)
185 KOG1947 Leucine rich repeat pr 96.7 0.00023 5E-09 87.7 -1.7 213 1138-1355 188-415 (482)
186 COG2607 Predicted ATPase (AAA+ 96.7 0.011 2.3E-07 60.3 10.1 123 114-264 57-183 (287)
187 KOG3665 ZYG-1-like serine/thre 96.7 0.001 2.2E-08 82.3 3.6 108 498-611 146-261 (699)
188 PRK08058 DNA polymerase III su 96.7 0.013 2.8E-07 66.7 12.1 163 119-293 7-181 (329)
189 PF13177 DNA_pol3_delta2: DNA 96.7 0.013 2.8E-07 58.8 10.5 136 121-281 1-161 (162)
190 KOG2982 Uncharacterized conser 96.6 0.00046 1E-08 71.7 -0.2 59 972-1030 71-132 (418)
191 COG1373 Predicted ATPase (AAA+ 96.6 0.017 3.7E-07 67.3 12.4 147 146-327 39-192 (398)
192 PRK10787 DNA-binding ATP-depen 96.6 0.0065 1.4E-07 76.8 9.6 51 116-166 321-371 (784)
193 CHL00176 ftsH cell division pr 96.6 0.0074 1.6E-07 74.1 9.6 177 117-319 183-386 (638)
194 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0021 4.5E-08 71.6 4.4 50 118-167 52-101 (361)
195 KOG1644 U2-associated snRNP A' 96.6 0.0029 6.3E-08 62.5 4.8 103 529-634 41-150 (233)
196 COG2812 DnaX DNA polymerase II 96.6 0.0046 1E-07 72.4 7.3 189 117-321 16-214 (515)
197 KOG1514 Origin recognition com 96.5 0.042 9E-07 65.0 14.7 206 118-330 397-624 (767)
198 PRK08181 transposase; Validate 96.5 0.0035 7.7E-08 68.1 5.7 101 145-264 107-209 (269)
199 PRK07261 topology modulation p 96.5 0.0062 1.3E-07 61.9 7.1 64 146-233 2-66 (171)
200 PRK08939 primosomal protein Dn 96.5 0.0073 1.6E-07 67.3 8.1 122 121-263 135-260 (306)
201 PRK07952 DNA replication prote 96.5 0.0075 1.6E-07 64.5 7.8 103 144-263 99-204 (244)
202 KOG1644 U2-associated snRNP A' 96.5 0.004 8.7E-08 61.5 5.2 106 1162-1271 42-149 (233)
203 PRK06871 DNA polymerase III su 96.5 0.044 9.4E-07 61.3 13.9 177 125-324 10-200 (325)
204 TIGR02640 gas_vesic_GvpN gas v 96.4 0.029 6.2E-07 61.7 12.4 57 123-192 8-64 (262)
205 cd01123 Rad51_DMC1_radA Rad51_ 96.4 0.0096 2.1E-07 64.8 8.7 51 142-192 17-71 (235)
206 TIGR00763 lon ATP-dependent pr 96.4 0.013 2.7E-07 75.1 10.8 51 117-167 320-370 (775)
207 KOG3665 ZYG-1-like serine/thre 96.4 0.0026 5.7E-08 78.7 4.4 138 553-726 122-263 (699)
208 PRK09361 radB DNA repair and r 96.4 0.0088 1.9E-07 64.4 7.8 47 142-191 21-67 (225)
209 PRK12608 transcription termina 96.4 0.014 3.1E-07 65.3 9.3 103 125-233 119-229 (380)
210 TIGR03345 VI_ClpV1 type VI sec 96.4 0.0056 1.2E-07 78.3 7.1 137 117-263 566-718 (852)
211 COG1222 RPT1 ATP-dependent 26S 96.4 0.017 3.6E-07 62.7 9.4 188 118-332 152-372 (406)
212 PRK06526 transposase; Provisio 96.4 0.0039 8.4E-08 67.5 4.9 100 145-264 99-201 (254)
213 PRK09183 transposase/IS protei 96.3 0.0066 1.4E-07 66.2 6.6 101 145-264 103-206 (259)
214 TIGR03346 chaperone_ClpB ATP-d 96.3 0.01 2.3E-07 76.6 9.3 137 117-263 565-717 (852)
215 COG5238 RNA1 Ran GTPase-activa 96.3 0.0011 2.5E-08 67.9 0.4 40 1182-1221 88-131 (388)
216 TIGR01241 FtsH_fam ATP-depende 96.3 0.024 5.3E-07 68.8 11.8 179 116-320 54-259 (495)
217 PF02562 PhoH: PhoH-like prote 96.3 0.0077 1.7E-07 61.9 6.2 131 121-264 4-156 (205)
218 TIGR02237 recomb_radB DNA repa 96.3 0.011 2.3E-07 63.0 7.6 49 142-193 10-58 (209)
219 PRK10865 protein disaggregatio 96.2 0.012 2.6E-07 75.7 8.9 123 117-249 568-695 (857)
220 PF01695 IstB_IS21: IstB-like 96.2 0.0038 8.2E-08 63.7 3.4 100 145-264 48-150 (178)
221 PRK06921 hypothetical protein; 96.2 0.01 2.2E-07 64.8 6.9 37 144-182 117-154 (266)
222 TIGR02639 ClpA ATP-dependent C 96.1 0.015 3.2E-07 74.1 8.8 122 117-250 454-579 (731)
223 KOG2004 Mitochondrial ATP-depe 96.0 0.0094 2E-07 70.0 6.1 105 116-233 410-514 (906)
224 PRK12377 putative replication 96.0 0.024 5.2E-07 60.8 8.8 101 145-263 102-205 (248)
225 PRK07993 DNA polymerase III su 96.0 0.12 2.5E-06 58.7 14.5 181 124-327 9-204 (334)
226 PF00560 LRR_1: Leucine Rich R 95.9 0.0034 7.4E-08 38.4 1.1 18 555-572 2-19 (22)
227 CHL00095 clpC Clp protease ATP 95.9 0.018 3.8E-07 74.3 8.6 137 117-263 509-661 (821)
228 PF13207 AAA_17: AAA domain; P 95.9 0.0049 1.1E-07 58.9 2.7 21 146-166 1-21 (121)
229 PRK04296 thymidine kinase; Pro 95.9 0.0093 2E-07 61.8 4.8 114 145-265 3-117 (190)
230 KOG2123 Uncharacterized conser 95.9 0.00062 1.4E-08 70.1 -3.8 99 531-632 20-125 (388)
231 COG1223 Predicted ATPase (AAA+ 95.9 0.031 6.7E-07 57.4 8.1 156 117-294 121-297 (368)
232 cd01393 recA_like RecA is a b 95.8 0.046 1E-06 59.0 10.2 89 142-233 17-123 (226)
233 PF07728 AAA_5: AAA domain (dy 95.8 0.0033 7.1E-08 61.8 1.0 86 147-246 2-87 (139)
234 PRK06696 uridine kinase; Valid 95.8 0.011 2.3E-07 63.4 5.0 43 121-166 2-44 (223)
235 PRK06835 DNA replication prote 95.8 0.0066 1.4E-07 68.2 3.3 102 145-263 184-288 (329)
236 PRK06964 DNA polymerase III su 95.8 0.12 2.6E-06 58.4 13.1 94 223-328 131-226 (342)
237 PF00158 Sigma54_activat: Sigm 95.7 0.013 2.8E-07 59.0 4.9 45 119-167 1-45 (168)
238 PRK05541 adenylylsulfate kinas 95.7 0.015 3.3E-07 59.7 5.6 36 143-180 6-41 (176)
239 PF00560 LRR_1: Leucine Rich R 95.7 0.0066 1.4E-07 37.2 1.7 22 531-552 1-22 (22)
240 PRK15455 PrkA family serine pr 95.7 0.0076 1.6E-07 70.5 3.3 49 118-166 77-125 (644)
241 PF10443 RNA12: RNA12 protein; 95.7 0.33 7.1E-06 55.3 15.8 208 122-345 1-297 (431)
242 TIGR01243 CDC48 AAA family ATP 95.6 0.068 1.5E-06 68.4 12.0 178 117-320 453-656 (733)
243 PF07693 KAP_NTPase: KAP famil 95.6 0.2 4.4E-06 57.6 14.8 42 123-167 2-43 (325)
244 cd01394 radB RadB. The archaea 95.5 0.034 7.3E-07 59.6 7.7 44 142-187 17-60 (218)
245 PF08423 Rad51: Rad51; InterP 95.5 0.025 5.4E-07 61.6 6.6 90 143-233 37-142 (256)
246 COG1484 DnaC DNA replication p 95.5 0.023 5.1E-07 61.5 6.4 81 144-242 105-185 (254)
247 cd01133 F1-ATPase_beta F1 ATP 95.5 0.033 7.1E-07 60.1 7.2 88 144-233 69-172 (274)
248 cd00983 recA RecA is a bacter 95.5 0.019 4E-07 63.8 5.6 85 142-233 53-142 (325)
249 cd00561 CobA_CobO_BtuR ATP:cor 95.4 0.033 7.1E-07 54.8 6.3 118 145-265 3-139 (159)
250 KOG2739 Leucine-rich acidic nu 95.4 0.0077 1.7E-07 62.5 2.0 58 551-610 63-126 (260)
251 TIGR02012 tigrfam_recA protein 95.4 0.021 4.5E-07 63.5 5.4 85 142-233 53-142 (321)
252 PRK11034 clpA ATP-dependent Cl 95.4 0.032 6.9E-07 70.0 7.7 120 117-249 458-582 (758)
253 COG0470 HolB ATPase involved i 95.4 0.05 1.1E-06 62.8 8.9 142 118-280 2-167 (325)
254 COG0572 Udk Uridine kinase [Nu 95.4 0.031 6.6E-07 57.4 6.1 77 142-225 6-85 (218)
255 KOG0734 AAA+-type ATPase conta 95.4 0.05 1.1E-06 61.8 8.1 54 117-170 304-363 (752)
256 PF14532 Sigma54_activ_2: Sigm 95.4 0.0094 2E-07 58.3 2.3 44 120-167 1-44 (138)
257 PRK11889 flhF flagellar biosyn 95.3 0.087 1.9E-06 59.3 9.9 88 143-233 240-329 (436)
258 TIGR02902 spore_lonB ATP-depen 95.3 0.04 8.7E-07 67.0 8.0 43 118-166 66-108 (531)
259 CHL00195 ycf46 Ycf46; Provisio 95.3 0.058 1.3E-06 64.1 9.1 159 117-296 228-407 (489)
260 KOG1969 DNA replication checkp 95.3 0.041 8.9E-07 65.2 7.5 77 141-236 323-399 (877)
261 PRK09354 recA recombinase A; P 95.3 0.026 5.7E-07 63.1 5.9 85 142-233 58-147 (349)
262 TIGR03499 FlhF flagellar biosy 95.2 0.055 1.2E-06 60.0 8.2 88 143-233 193-281 (282)
263 PF00448 SRP54: SRP54-type pro 95.2 0.043 9.4E-07 56.9 6.8 56 145-202 2-58 (196)
264 KOG2739 Leucine-rich acidic nu 95.2 0.0043 9.3E-08 64.3 -0.6 89 1154-1245 35-127 (260)
265 PRK08233 hypothetical protein; 95.2 0.052 1.1E-06 56.3 7.5 24 144-167 3-26 (182)
266 PRK04132 replication factor C 95.2 0.15 3.1E-06 64.3 12.3 155 150-325 570-729 (846)
267 TIGR02238 recomb_DMC1 meiotic 95.1 0.051 1.1E-06 60.8 7.5 59 142-201 94-156 (313)
268 COG1618 Predicted nucleotide k 95.1 0.016 3.4E-07 55.3 2.8 23 145-167 6-28 (179)
269 COG0468 RecA RecA/RadA recombi 95.1 0.085 1.8E-06 57.2 8.7 91 140-233 56-150 (279)
270 KOG0733 Nuclear AAA ATPase (VC 95.1 0.2 4.3E-06 58.3 11.8 98 116-234 189-292 (802)
271 TIGR01243 CDC48 AAA family ATP 95.1 0.076 1.6E-06 68.0 9.8 51 117-167 178-235 (733)
272 PRK08699 DNA polymerase III su 95.0 0.11 2.4E-06 58.6 9.8 71 223-293 112-184 (325)
273 PRK04301 radA DNA repair and r 94.9 0.061 1.3E-06 61.1 7.7 57 142-199 100-160 (317)
274 PLN03187 meiotic recombination 94.9 0.059 1.3E-06 60.7 7.4 59 142-201 124-186 (344)
275 cd01120 RecA-like_NTPases RecA 94.9 0.085 1.8E-06 53.5 8.2 39 146-186 1-39 (165)
276 KOG2228 Origin recognition com 94.9 0.12 2.7E-06 55.6 9.2 173 118-294 25-219 (408)
277 cd01131 PilT Pilus retraction 94.9 0.023 5.1E-07 59.4 3.9 112 145-268 2-113 (198)
278 PRK14722 flhF flagellar biosyn 94.9 0.07 1.5E-06 60.6 7.8 88 143-233 136-224 (374)
279 COG1419 FlhF Flagellar GTP-bin 94.8 0.077 1.7E-06 59.6 7.8 86 144-233 203-290 (407)
280 COG0563 Adk Adenylate kinase a 94.8 0.037 8.1E-07 56.1 4.8 22 146-167 2-23 (178)
281 KOG1051 Chaperone HSP104 and r 94.8 0.092 2E-06 65.5 9.0 121 117-249 562-685 (898)
282 COG2884 FtsE Predicted ATPase 94.8 0.15 3.1E-06 50.5 8.4 59 212-270 143-203 (223)
283 PRK13695 putative NTPase; Prov 94.8 0.011 2.5E-07 60.5 1.0 22 146-167 2-23 (174)
284 PF00485 PRK: Phosphoribulokin 94.7 0.092 2E-06 54.9 7.8 81 146-229 1-88 (194)
285 PF13604 AAA_30: AAA domain; P 94.7 0.021 4.5E-07 59.5 2.9 106 145-263 19-130 (196)
286 PF01583 APS_kinase: Adenylyls 94.7 0.036 7.8E-07 54.2 4.3 36 144-181 2-37 (156)
287 cd03247 ABCC_cytochrome_bd The 94.7 0.1 2.2E-06 53.8 7.8 24 144-167 28-51 (178)
288 TIGR00959 ffh signal recogniti 94.7 0.13 2.9E-06 59.9 9.5 24 143-166 98-121 (428)
289 PRK13531 regulatory ATPase Rav 94.6 0.033 7.3E-07 64.6 4.5 41 118-166 21-61 (498)
290 PRK12727 flagellar biosynthesi 94.6 0.13 2.8E-06 60.4 9.2 88 143-233 349-437 (559)
291 PRK00771 signal recognition pa 94.6 0.14 3.1E-06 59.8 9.7 88 143-233 94-184 (437)
292 cd03214 ABC_Iron-Siderophores_ 94.6 0.17 3.6E-06 52.2 9.3 121 144-268 25-162 (180)
293 PRK10867 signal recognition pa 94.6 0.14 3E-06 59.8 9.5 24 143-166 99-122 (433)
294 PRK07667 uridine kinase; Provi 94.6 0.042 9E-07 57.3 4.7 37 126-166 3-39 (193)
295 cd02025 PanK Pantothenate kina 94.5 0.12 2.5E-06 55.0 7.8 74 146-222 1-76 (220)
296 COG0464 SpoVK ATPases of the A 94.4 0.21 4.5E-06 61.1 11.1 157 118-295 243-424 (494)
297 TIGR02239 recomb_RAD51 DNA rep 94.4 0.086 1.9E-06 59.3 7.1 58 142-200 94-155 (316)
298 KOG0924 mRNA splicing factor A 94.4 0.15 3.2E-06 59.7 8.7 143 124-280 359-529 (1042)
299 KOG2123 Uncharacterized conser 94.4 0.006 1.3E-07 63.1 -1.9 80 527-607 38-124 (388)
300 PRK09270 nucleoside triphospha 94.4 0.15 3.3E-06 54.8 8.8 25 142-166 31-55 (229)
301 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.4 0.17 3.6E-06 49.8 8.3 106 144-269 26-132 (144)
302 KOG0731 AAA+-type ATPase conta 94.4 0.3 6.4E-06 59.8 11.8 183 117-324 311-521 (774)
303 TIGR02236 recomb_radA DNA repa 94.4 0.11 2.4E-06 59.0 8.0 57 142-199 93-153 (310)
304 KOG2035 Replication factor C, 94.4 0.069 1.5E-06 55.7 5.6 209 119-350 15-261 (351)
305 KOG0473 Leucine-rich repeat pr 94.4 0.0028 6.1E-08 63.6 -4.2 86 525-611 37-122 (326)
306 COG4608 AppF ABC-type oligopep 94.3 0.16 3.6E-06 53.8 8.4 126 143-271 38-177 (268)
307 KOG0735 AAA+-type ATPase [Post 94.3 0.071 1.5E-06 62.9 6.1 71 144-233 431-503 (952)
308 PRK12724 flagellar biosynthesi 94.3 0.096 2.1E-06 59.9 7.1 23 144-166 223-245 (432)
309 PRK06067 flagellar accessory p 94.3 0.087 1.9E-06 57.1 6.7 88 142-234 23-130 (234)
310 PTZ00301 uridine kinase; Provi 94.3 0.06 1.3E-06 56.4 5.2 23 144-166 3-25 (210)
311 KOG0744 AAA+-type ATPase [Post 94.3 0.11 2.3E-06 55.5 6.8 79 144-233 177-259 (423)
312 PF08298 AAA_PrkA: PrkA AAA do 94.2 0.051 1.1E-06 60.0 4.6 51 116-166 60-110 (358)
313 PRK05703 flhF flagellar biosyn 94.2 0.15 3.1E-06 60.0 8.7 87 144-233 221-308 (424)
314 cd02019 NK Nucleoside/nucleoti 94.2 0.031 6.8E-07 46.6 2.3 22 146-167 1-22 (69)
315 PRK15453 phosphoribulokinase; 94.2 0.59 1.3E-05 50.5 12.3 79 143-223 4-89 (290)
316 TIGR00064 ftsY signal recognit 94.2 0.16 3.4E-06 55.9 8.2 89 142-233 70-163 (272)
317 PF12775 AAA_7: P-loop contain 94.2 0.041 8.9E-07 60.4 3.7 95 127-241 23-117 (272)
318 PF13238 AAA_18: AAA domain; P 94.1 0.03 6.5E-07 54.1 2.4 21 147-167 1-21 (129)
319 cd03238 ABC_UvrA The excision 94.1 0.16 3.4E-06 51.7 7.6 115 144-268 21-153 (176)
320 TIGR01650 PD_CobS cobaltochela 94.1 0.27 5.8E-06 54.6 9.8 59 119-190 47-105 (327)
321 cd03223 ABCD_peroxisomal_ALDP 94.1 0.22 4.8E-06 50.4 8.7 24 144-167 27-50 (166)
322 PLN00020 ribulose bisphosphate 94.1 0.087 1.9E-06 58.4 5.9 26 142-167 146-171 (413)
323 cd03115 SRP The signal recogni 94.0 0.16 3.5E-06 52.0 7.7 21 146-166 2-22 (173)
324 TIGR01425 SRP54_euk signal rec 94.0 0.25 5.4E-06 57.3 9.7 24 143-166 99-122 (429)
325 COG0542 clpA ATP-binding subun 94.0 0.1 2.2E-06 64.2 6.9 155 118-294 171-346 (786)
326 cd03216 ABC_Carb_Monos_I This 94.0 0.13 2.8E-06 52.0 6.7 117 144-268 26-146 (163)
327 cd03228 ABCC_MRP_Like The MRP 94.0 0.18 3.8E-06 51.5 7.8 24 144-167 28-51 (171)
328 PRK11608 pspF phage shock prot 94.0 0.1 2.3E-06 59.3 6.7 46 117-166 6-51 (326)
329 KOG0730 AAA+-type ATPase [Post 94.0 0.32 6.9E-06 57.6 10.5 56 117-174 434-496 (693)
330 TIGR00554 panK_bact pantothena 93.9 0.25 5.3E-06 54.4 9.2 80 142-224 60-141 (290)
331 cd03222 ABC_RNaseL_inhibitor T 93.9 0.19 4.1E-06 51.1 7.8 23 144-166 25-47 (177)
332 COG1875 NYN ribonuclease and A 93.9 0.16 3.4E-06 55.5 7.4 132 121-264 228-388 (436)
333 PRK05439 pantothenate kinase; 93.9 0.26 5.6E-06 54.7 9.3 81 142-225 84-166 (311)
334 PRK12726 flagellar biosynthesi 93.9 0.24 5.2E-06 55.7 9.1 89 142-233 204-294 (407)
335 TIGR01817 nifA Nif-specific re 93.9 0.25 5.4E-06 60.9 10.4 48 116-167 195-242 (534)
336 PRK06547 hypothetical protein; 93.9 0.071 1.5E-06 53.9 4.6 26 142-167 13-38 (172)
337 TIGR00235 udk uridine kinase. 93.9 0.05 1.1E-06 57.6 3.6 24 143-166 5-28 (207)
338 PF08433 KTI12: Chromatin asso 93.9 0.11 2.4E-06 56.6 6.4 22 145-166 2-23 (270)
339 PRK14974 cell division protein 93.9 0.21 4.5E-06 56.3 8.6 90 143-235 139-233 (336)
340 PRK06002 fliI flagellum-specif 93.8 0.12 2.6E-06 59.9 6.7 85 144-233 165-263 (450)
341 TIGR03877 thermo_KaiC_1 KaiC d 93.8 0.17 3.8E-06 54.7 7.8 49 142-194 19-67 (237)
342 PF07726 AAA_3: ATPase family 93.8 0.031 6.6E-07 51.9 1.6 27 147-175 2-28 (131)
343 PRK05480 uridine/cytidine kina 93.8 0.049 1.1E-06 57.8 3.4 25 143-167 5-29 (209)
344 PLN03186 DNA repair protein RA 93.8 0.28 6.1E-06 55.5 9.5 59 142-201 121-183 (342)
345 COG1428 Deoxynucleoside kinase 93.8 0.04 8.6E-07 55.7 2.4 24 144-167 4-27 (216)
346 PTZ00494 tuzin-like protein; P 93.8 1 2.2E-05 50.9 13.2 170 112-293 366-543 (664)
347 PRK12723 flagellar biosynthesi 93.8 0.21 4.5E-06 57.5 8.5 88 143-234 173-264 (388)
348 TIGR00150 HI0065_YjeE ATPase, 93.7 0.083 1.8E-06 50.2 4.4 40 124-167 6-45 (133)
349 PTZ00088 adenylate kinase 1; P 93.7 0.064 1.4E-06 57.0 4.1 20 147-166 9-28 (229)
350 PF13671 AAA_33: AAA domain; P 93.7 0.047 1E-06 53.9 3.0 21 146-166 1-21 (143)
351 PTZ00035 Rad51 protein; Provis 93.7 0.26 5.7E-06 55.9 9.2 58 142-200 116-177 (337)
352 PF07724 AAA_2: AAA domain (Cd 93.7 0.029 6.3E-07 56.7 1.4 40 144-185 3-43 (171)
353 PF00154 RecA: recA bacterial 93.7 0.093 2E-06 58.1 5.3 85 142-233 51-140 (322)
354 COG1121 ZnuC ABC-type Mn/Zn tr 93.6 0.29 6.2E-06 52.0 8.6 124 144-269 30-204 (254)
355 TIGR00708 cobA cob(I)alamin ad 93.6 0.24 5.2E-06 49.4 7.5 118 145-264 6-140 (173)
356 cd02024 NRK1 Nicotinamide ribo 93.5 0.097 2.1E-06 53.5 4.8 22 146-167 1-22 (187)
357 PRK15429 formate hydrogenlyase 93.5 0.2 4.4E-06 63.7 8.8 62 117-184 376-437 (686)
358 PRK14723 flhF flagellar biosyn 93.5 0.44 9.5E-06 59.1 11.1 87 144-233 185-272 (767)
359 PF00910 RNA_helicase: RNA hel 93.4 0.039 8.4E-07 51.0 1.6 21 147-167 1-21 (107)
360 TIGR03575 selen_PSTK_euk L-ser 93.4 0.15 3.3E-06 57.2 6.6 21 147-167 2-22 (340)
361 PHA00729 NTP-binding motif con 93.4 0.091 2E-06 54.8 4.4 24 143-166 16-39 (226)
362 cd03281 ABC_MSH5_euk MutS5 hom 93.4 0.057 1.2E-06 57.0 3.0 23 144-166 29-51 (213)
363 cd01121 Sms Sms (bacterial rad 93.4 0.31 6.7E-06 56.0 9.1 83 143-233 81-167 (372)
364 cd01122 GP4d_helicase GP4d_hel 93.4 0.38 8.1E-06 53.6 9.8 53 144-199 30-82 (271)
365 KOG0733 Nuclear AAA ATPase (VC 93.4 0.41 8.8E-06 55.9 9.7 154 144-320 545-717 (802)
366 TIGR02974 phageshock_pspF psp 93.3 0.16 3.5E-06 57.7 6.8 45 119-167 1-45 (329)
367 PF13306 LRR_5: Leucine rich r 93.3 0.29 6.2E-06 47.2 7.7 82 1157-1243 7-90 (129)
368 COG4240 Predicted kinase [Gene 93.3 0.2 4.4E-06 50.6 6.4 83 143-226 49-135 (300)
369 cd02028 UMPK_like Uridine mono 93.3 0.12 2.6E-06 53.0 5.2 21 146-166 1-21 (179)
370 PRK06762 hypothetical protein; 93.3 0.061 1.3E-06 54.7 3.0 22 145-166 3-24 (166)
371 PF03308 ArgK: ArgK protein; 93.3 0.098 2.1E-06 55.0 4.4 60 125-188 14-73 (266)
372 COG4088 Predicted nucleotide k 93.2 0.07 1.5E-06 53.1 3.0 22 145-166 2-23 (261)
373 KOG0739 AAA+-type ATPase [Post 93.2 1.1 2.3E-05 47.6 11.5 95 117-233 133-234 (439)
374 PF00006 ATP-synt_ab: ATP synt 93.2 0.17 3.6E-06 53.1 6.0 83 145-233 16-114 (215)
375 TIGR03878 thermo_KaiC_2 KaiC d 93.1 0.22 4.8E-06 54.5 7.3 41 142-184 34-74 (259)
376 TIGR00390 hslU ATP-dependent p 93.1 0.22 4.9E-06 56.7 7.2 81 117-199 12-104 (441)
377 PRK03839 putative kinase; Prov 93.1 0.063 1.4E-06 55.4 2.8 22 146-167 2-23 (180)
378 PRK14721 flhF flagellar biosyn 93.1 0.37 7.9E-06 55.9 9.1 24 143-166 190-213 (420)
379 TIGR02858 spore_III_AA stage I 93.1 0.29 6.3E-06 53.4 7.9 129 125-268 97-233 (270)
380 PF13504 LRR_7: Leucine rich r 93.1 0.053 1.1E-06 30.7 1.2 15 554-568 2-16 (17)
381 PRK10463 hydrogenase nickel in 93.1 0.34 7.3E-06 52.9 8.3 26 142-167 102-127 (290)
382 PRK10733 hflB ATP-dependent me 93.1 0.33 7.2E-06 60.7 9.5 158 117-295 152-336 (644)
383 KOG0743 AAA+-type ATPase [Post 93.0 9 0.0002 44.0 19.3 72 256-334 339-416 (457)
384 PRK05022 anaerobic nitric oxid 93.0 0.24 5.2E-06 60.4 8.0 64 116-185 186-249 (509)
385 TIGR01360 aden_kin_iso1 adenyl 93.0 0.077 1.7E-06 55.3 3.3 24 143-166 2-25 (188)
386 PRK00625 shikimate kinase; Pro 93.0 0.066 1.4E-06 54.2 2.6 22 146-167 2-23 (173)
387 cd03230 ABC_DR_subfamily_A Thi 92.9 0.2 4.2E-06 51.3 6.1 120 144-269 26-160 (173)
388 cd01135 V_A-ATPase_B V/A-type 92.9 0.33 7.1E-06 52.4 7.8 90 144-233 69-175 (276)
389 cd03246 ABCC_Protease_Secretio 92.9 0.24 5.1E-06 50.7 6.6 24 144-167 28-51 (173)
390 PRK07132 DNA polymerase III su 92.9 2 4.3E-05 47.8 14.2 152 144-326 18-184 (299)
391 COG1102 Cmk Cytidylate kinase 92.8 0.064 1.4E-06 51.4 2.0 44 146-202 2-45 (179)
392 PRK05201 hslU ATP-dependent pr 92.8 0.23 5E-06 56.6 6.8 82 116-199 14-107 (443)
393 PRK06995 flhF flagellar biosyn 92.8 0.56 1.2E-05 55.4 10.2 25 143-167 255-279 (484)
394 cd01125 repA Hexameric Replica 92.7 0.3 6.5E-06 53.0 7.5 21 146-166 3-23 (239)
395 PF13306 LRR_5: Leucine rich r 92.6 0.31 6.8E-06 46.9 6.9 100 1139-1244 13-113 (129)
396 PRK05986 cob(I)alamin adenolsy 92.6 0.27 5.9E-06 49.8 6.4 119 144-264 22-158 (191)
397 COG1066 Sms Predicted ATP-depe 92.6 0.48 1E-05 53.0 8.6 81 144-233 93-177 (456)
398 PRK08972 fliI flagellum-specif 92.6 0.28 6.1E-06 56.6 7.2 84 144-233 162-261 (444)
399 COG1703 ArgK Putative periplas 92.6 0.14 3E-06 54.6 4.4 62 127-192 38-99 (323)
400 PRK05342 clpX ATP-dependent pr 92.6 0.23 5E-06 57.9 6.6 51 116-166 70-130 (412)
401 PRK04040 adenylate kinase; Pro 92.5 0.087 1.9E-06 54.3 2.9 22 145-166 3-24 (188)
402 KOG0728 26S proteasome regulat 92.5 2.6 5.6E-05 43.4 12.9 156 118-294 147-331 (404)
403 KOG0473 Leucine-rich repeat pr 92.5 0.0072 1.6E-07 60.8 -4.8 86 542-629 30-116 (326)
404 COG0529 CysC Adenylylsulfate k 92.5 0.11 2.4E-06 50.6 3.2 24 143-166 22-45 (197)
405 COG0467 RAD55 RecA-superfamily 92.4 0.22 4.8E-06 54.9 6.1 42 142-185 21-62 (260)
406 KOG0738 AAA+-type ATPase [Post 92.4 0.27 5.8E-06 54.1 6.3 24 143-166 244-267 (491)
407 PRK06731 flhF flagellar biosyn 92.3 0.46 1E-05 51.8 8.1 89 144-235 75-165 (270)
408 COG3640 CooC CO dehydrogenase 92.2 0.18 4E-06 51.7 4.5 42 146-188 2-43 (255)
409 KOG1532 GTPase XAB1, interacts 92.2 0.5 1.1E-05 49.3 7.7 26 142-167 17-42 (366)
410 TIGR03881 KaiC_arch_4 KaiC dom 92.2 0.43 9.3E-06 51.5 7.9 41 142-184 18-58 (229)
411 PF13504 LRR_7: Leucine rich r 92.2 0.095 2.1E-06 29.7 1.5 17 530-546 1-17 (17)
412 PRK09519 recA DNA recombinatio 92.2 0.33 7.1E-06 60.4 7.6 85 142-233 58-147 (790)
413 COG0714 MoxR-like ATPases [Gen 92.1 0.32 6.9E-06 55.7 7.2 66 118-196 25-90 (329)
414 PRK00131 aroK shikimate kinase 92.1 0.1 2.2E-06 53.7 2.9 24 144-167 4-27 (175)
415 COG1136 SalX ABC-type antimicr 92.1 0.72 1.6E-05 48.2 8.9 59 212-270 148-209 (226)
416 PRK00889 adenylylsulfate kinas 92.1 0.13 2.9E-06 52.7 3.7 24 144-167 4-27 (175)
417 PRK08149 ATP synthase SpaL; Va 92.1 0.39 8.4E-06 55.7 7.6 86 144-233 151-250 (428)
418 cd02023 UMPK Uridine monophosp 92.1 0.088 1.9E-06 55.3 2.3 21 146-166 1-21 (198)
419 TIGR01359 UMP_CMP_kin_fam UMP- 92.1 0.088 1.9E-06 54.6 2.3 21 146-166 1-21 (183)
420 PRK10751 molybdopterin-guanine 92.0 0.15 3.3E-06 51.1 3.7 25 143-167 5-29 (173)
421 cd01136 ATPase_flagellum-secre 92.0 0.5 1.1E-05 52.8 8.2 84 144-233 69-168 (326)
422 cd02029 PRK_like Phosphoribulo 92.0 0.34 7.3E-06 51.8 6.4 78 146-225 1-85 (277)
423 PRK05922 type III secretion sy 92.0 0.36 7.7E-06 56.0 7.1 86 144-233 157-256 (434)
424 cd02021 GntK Gluconate kinase 91.9 0.099 2.1E-06 52.1 2.4 22 146-167 1-22 (150)
425 PTZ00185 ATPase alpha subunit; 91.9 0.55 1.2E-05 54.7 8.5 88 144-233 189-298 (574)
426 COG0003 ArsA Predicted ATPase 91.9 0.22 4.7E-06 55.5 5.2 48 144-193 2-49 (322)
427 cd00227 CPT Chloramphenicol (C 91.8 0.12 2.5E-06 53.1 2.8 23 145-167 3-25 (175)
428 TIGR02322 phosphon_PhnN phosph 91.8 0.13 2.7E-06 53.2 3.1 23 145-167 2-24 (179)
429 cd00267 ABC_ATPase ABC (ATP-bi 91.8 0.24 5.2E-06 49.7 5.0 117 145-270 26-146 (157)
430 PRK08533 flagellar accessory p 91.8 0.64 1.4E-05 49.9 8.4 49 143-195 23-71 (230)
431 COG1936 Predicted nucleotide k 91.8 0.13 2.8E-06 50.2 2.8 20 146-165 2-21 (180)
432 PRK04328 hypothetical protein; 91.7 0.39 8.5E-06 52.3 6.9 42 142-185 21-62 (249)
433 COG2842 Uncharacterized ATPase 91.7 1.7 3.7E-05 46.8 11.2 96 145-249 95-190 (297)
434 TIGR01069 mutS2 MutS2 family p 91.7 0.13 2.9E-06 65.1 3.6 113 223-345 401-518 (771)
435 PRK06217 hypothetical protein; 91.7 0.11 2.5E-06 53.6 2.6 22 146-167 3-24 (183)
436 PRK10820 DNA-binding transcrip 91.6 0.34 7.3E-06 59.1 6.9 46 117-166 204-249 (520)
437 COG2019 AdkA Archaeal adenylat 91.6 0.17 3.6E-06 48.8 3.3 23 144-166 4-26 (189)
438 PRK08927 fliI flagellum-specif 91.5 0.47 1E-05 55.1 7.5 86 144-233 158-257 (442)
439 COG0465 HflB ATP-dependent Zn 91.5 0.53 1.1E-05 56.5 8.1 56 115-170 148-209 (596)
440 cd03282 ABC_MSH4_euk MutS4 hom 91.5 0.15 3.3E-06 53.3 3.3 120 144-271 29-158 (204)
441 PRK12597 F0F1 ATP synthase sub 91.5 0.38 8.3E-06 56.3 6.8 90 143-233 142-246 (461)
442 TIGR03263 guanyl_kin guanylate 91.5 0.14 3.1E-06 52.8 3.0 22 145-166 2-23 (180)
443 PRK13765 ATP-dependent proteas 91.4 0.27 5.9E-06 60.4 5.8 75 117-201 31-105 (637)
444 PRK13949 shikimate kinase; Pro 91.4 0.13 2.8E-06 52.1 2.6 22 146-167 3-24 (169)
445 PF03205 MobB: Molybdopterin g 91.4 0.17 3.8E-06 49.1 3.3 39 145-184 1-39 (140)
446 cd02034 CooC The accessory pro 91.4 0.65 1.4E-05 43.4 7.0 21 147-167 2-22 (116)
447 cd02020 CMPK Cytidine monophos 91.4 0.12 2.6E-06 51.3 2.3 21 146-166 1-21 (147)
448 cd00071 GMPK Guanosine monopho 91.3 0.14 3.1E-06 49.7 2.7 22 146-167 1-22 (137)
449 KOG0736 Peroxisome assembly fa 91.3 2.5 5.5E-05 51.2 13.1 184 109-317 664-875 (953)
450 PF03193 DUF258: Protein of un 91.3 0.27 5.9E-06 48.4 4.6 36 123-167 23-58 (161)
451 PRK03846 adenylylsulfate kinas 91.3 0.17 3.6E-06 53.1 3.4 24 143-166 23-46 (198)
452 PRK09280 F0F1 ATP synthase sub 91.3 0.37 8.1E-06 56.2 6.5 90 143-233 143-247 (463)
453 PRK13947 shikimate kinase; Pro 91.3 0.13 2.8E-06 52.6 2.5 21 146-166 3-23 (171)
454 PLN02796 D-glycerate 3-kinase 91.3 0.85 1.8E-05 51.0 8.9 25 143-167 99-123 (347)
455 PRK06793 fliI flagellum-specif 91.3 0.7 1.5E-05 53.7 8.6 88 143-233 155-255 (432)
456 TIGR03498 FliI_clade3 flagella 91.3 0.4 8.6E-06 55.7 6.6 86 144-233 140-239 (418)
457 PF01078 Mg_chelatase: Magnesi 91.3 0.27 5.8E-06 50.4 4.6 42 117-166 3-44 (206)
458 PF00625 Guanylate_kin: Guanyl 91.3 0.18 3.8E-06 52.2 3.5 37 144-182 2-38 (183)
459 cd00984 DnaB_C DnaB helicase C 91.2 0.88 1.9E-05 49.6 9.2 53 143-198 12-64 (242)
460 KOG3864 Uncharacterized conser 91.2 0.07 1.5E-06 53.2 0.4 89 1234-1332 101-190 (221)
461 COG1124 DppF ABC-type dipeptid 91.2 0.24 5.2E-06 51.4 4.2 23 144-166 33-55 (252)
462 PF13481 AAA_25: AAA domain; P 91.2 0.3 6.6E-06 51.1 5.3 41 145-185 33-81 (193)
463 cd00820 PEPCK_HprK Phosphoenol 91.2 0.2 4.4E-06 45.4 3.3 22 144-165 15-36 (107)
464 COG4639 Predicted kinase [Gene 91.2 0.17 3.8E-06 48.2 2.9 23 144-166 2-24 (168)
465 PRK10416 signal recognition pa 91.1 0.95 2E-05 51.0 9.3 25 143-167 113-137 (318)
466 PRK06936 type III secretion sy 91.0 0.56 1.2E-05 54.4 7.5 85 143-233 161-261 (439)
467 CHL00206 ycf2 Ycf2; Provisiona 91.0 0.71 1.5E-05 61.9 9.1 24 144-167 1630-1653(2281)
468 TIGR00764 lon_rel lon-related 91.0 0.42 9.2E-06 59.0 7.0 74 117-201 18-92 (608)
469 PF06309 Torsin: Torsin; Inte 91.0 0.3 6.5E-06 45.4 4.2 49 119-167 27-76 (127)
470 cd01129 PulE-GspE PulE/GspE Th 91.0 0.33 7.2E-06 53.1 5.4 80 145-235 81-160 (264)
471 PRK09099 type III secretion sy 91.0 0.63 1.4E-05 54.3 7.9 88 143-233 162-262 (441)
472 PRK05800 cobU adenosylcobinami 90.9 0.5 1.1E-05 47.7 6.2 81 146-233 3-85 (170)
473 PRK12339 2-phosphoglycerate ki 90.9 0.19 4E-06 52.2 3.2 24 144-167 3-26 (197)
474 TIGR03305 alt_F1F0_F1_bet alte 90.9 0.39 8.4E-06 55.9 6.0 90 143-233 137-241 (449)
475 PRK07721 fliI flagellum-specif 90.8 0.75 1.6E-05 54.0 8.3 25 143-167 157-181 (438)
476 PRK00300 gmk guanylate kinase; 90.8 0.18 3.9E-06 53.4 3.1 24 144-167 5-28 (205)
477 PRK13948 shikimate kinase; Pro 90.8 0.18 4E-06 51.4 3.0 24 143-166 9-32 (182)
478 cd01132 F1_ATPase_alpha F1 ATP 90.7 0.49 1.1E-05 51.1 6.2 84 144-233 69-170 (274)
479 KOG4252 GTP-binding protein [S 90.7 0.36 7.9E-06 46.4 4.6 36 146-182 22-57 (246)
480 COG0194 Gmk Guanylate kinase [ 90.7 0.22 4.7E-06 49.5 3.2 24 144-167 4-27 (191)
481 PRK10078 ribose 1,5-bisphospho 90.7 0.19 4.1E-06 52.1 3.1 23 145-167 3-25 (186)
482 COG1126 GlnQ ABC-type polar am 90.7 0.32 7E-06 49.4 4.4 35 144-181 28-62 (240)
483 TIGR01420 pilT_fam pilus retra 90.7 0.3 6.5E-06 56.0 4.9 111 145-267 123-233 (343)
484 PF03266 NTPase_1: NTPase; In 90.7 0.17 3.6E-06 51.0 2.5 21 147-167 2-22 (168)
485 cd02027 APSK Adenosine 5'-phos 90.7 0.17 3.7E-06 50.1 2.5 21 146-166 1-21 (149)
486 PRK05688 fliI flagellum-specif 90.6 0.65 1.4E-05 54.2 7.5 84 144-233 168-267 (451)
487 KOG3347 Predicted nucleotide k 90.6 0.18 3.9E-06 47.4 2.4 71 144-225 7-77 (176)
488 PRK11823 DNA repair protein Ra 90.5 0.76 1.6E-05 54.6 8.3 83 143-233 79-165 (446)
489 PRK14530 adenylate kinase; Pro 90.5 0.17 3.7E-06 53.8 2.7 22 145-166 4-25 (215)
490 PRK05057 aroK shikimate kinase 90.5 0.18 4E-06 51.2 2.7 23 145-167 5-27 (172)
491 cd00464 SK Shikimate kinase (S 90.5 0.19 4.1E-06 50.3 2.8 20 147-166 2-21 (154)
492 PRK12678 transcription termina 90.5 0.57 1.2E-05 55.2 6.9 90 143-233 415-512 (672)
493 PLN02348 phosphoribulokinase 90.5 0.19 4.2E-06 56.8 3.1 25 142-166 47-71 (395)
494 COG0541 Ffh Signal recognition 90.4 1.3 2.9E-05 50.2 9.4 44 124-167 77-123 (451)
495 TIGR00416 sms DNA repair prote 90.4 0.99 2.2E-05 53.7 9.1 84 142-233 92-179 (454)
496 PRK07196 fliI flagellum-specif 90.4 0.73 1.6E-05 53.6 7.7 25 143-167 154-178 (434)
497 KOG0079 GTP-binding protein H- 90.3 0.5 1.1E-05 44.0 5.0 81 148-236 12-93 (198)
498 PRK14737 gmk guanylate kinase; 90.3 0.26 5.6E-06 50.8 3.6 25 143-167 3-27 (186)
499 TIGR02655 circ_KaiC circadian 90.3 1.1 2.5E-05 54.1 9.7 49 142-194 261-309 (484)
500 TIGR01040 V-ATPase_V1_B V-type 90.3 0.58 1.3E-05 54.2 6.7 90 144-233 141-256 (466)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-79 Score=754.71 Aligned_cols=765 Identities=30% Similarity=0.439 Sum_probs=541.5
Q ss_pred CcccccchhhhhhHhHHHHHHHhhhcCCCCCCcccCCCCCccccccccccccccccccCCCCchhhHHHHHHHHHHHHHH
Q 035550 1 LQNLAFDVEDLLDEFQTEAFRRKLLLGNRDPAAALDQPSSSRTRTSKFRKLIPTCCTTFTPQSIQFDYAMMSKIKEINGR 80 (1385)
Q Consensus 1 lr~~~yd~eD~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 80 (1385)
+||++|+|||+++.|.+.....+..+.- ......... .|+. .+.++.+..+..+.++
T Consensus 64 ~~~~~~~~e~~~~~~~v~~~~~~~~~~l--------------~~~~~~~~~--~c~~-------~~~~~~~~~~~~~~~r 120 (889)
T KOG4658|consen 64 VGDLVYLAEDIIWLFLVEEIERKANDLL--------------STRSVERQR--LCLC-------GFCSKNVSDSYKYGKR 120 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHh--------------hhhHHHHHH--Hhhh-------hhHhHhhhhhHhHHHH
Confidence 4689999999999999988776543200 000001111 1222 3445666666666666
Q ss_pred HHHHHhcccccCcccccC--CCCccCCCccCcccCccCCeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHH
Q 035550 81 FQDIVTQKDSLGLNVSSV--GRSKKDRQRLPTTSLVNEAKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKT 158 (1385)
Q Consensus 81 l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKT 158 (1385)
+-.+.+.++.++....-. +.........++.+.....+ ||.++.++++...|.+++ ..+++|+||||+|||
T Consensus 121 v~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKT 193 (889)
T KOG4658|consen 121 VSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKT 193 (889)
T ss_pred HHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHH
Confidence 666666666555332111 11011112223444444555 999999999999997764 289999999999999
Q ss_pred HHHHHHhcCcc-ccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHHHHhHcCCCeEEEEEecCCCC
Q 035550 159 TLAQLVYNDKQ-VQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIV-DNHDLNKLQEELKKKLSPKKFLLVLDDVWNE 236 (1385)
Q Consensus 159 tLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 236 (1385)
|||++++|+.. ++.+|+.++||.||+.++...++++|++.++..... .....++++..+.+.|++|||+||+||||++
T Consensus 194 TL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~ 273 (889)
T KOG4658|consen 194 TLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE 273 (889)
T ss_pred HHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc
Confidence 99999999987 999999999999999999999999999999874432 2233478899999999999999999999998
Q ss_pred CccccccccCcccCCCCCcEEEEEccchhHhhh-hCCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHH
Q 035550 237 NYNDWDRLRPPFEAGAPGSKIIVTARNQGVAAI-MGTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVI 315 (1385)
Q Consensus 237 ~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~ 315 (1385)
.+|+.+..++|....||+|++|||+++|+.. +++...++++.|+.+|||.||++.||.... ...+.++++|++|++
T Consensus 274 --~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~ 350 (889)
T KOG4658|consen 274 --VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAE 350 (889)
T ss_pred --ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHH
Confidence 6799999999999899999999999999999 777889999999999999999999987643 233458999999999
Q ss_pred hcCCCchHHHHHhhhhcCCCCHHHHHHHHhhhhhhh----ccccccchHHHHHhhhcCChhhhhhhhhhcccCCCcccCh
Q 035550 316 KCNGLPLAAKTLGGLLRGKDDRREWEDVLSSKIWEL----QEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEE 391 (1385)
Q Consensus 316 ~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~----~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~~~~ 391 (1385)
+|+|+|||++++|+.|+.+...++|+.+.+...+.. ..+.+.|+++|++||+.||++.|.||+|||+||+||.|++
T Consensus 351 kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~ 430 (889)
T KOG4658|consen 351 KCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKK 430 (889)
T ss_pred HhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccch
Confidence 999999999999999999999999999998765542 2335689999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCccCCCCCcHHHHHHHHHHHHHHcCCccccC--CCCCeEEEchhHHHHHHhhcc-----ceEEEeecc
Q 035550 392 EEIILLWCASGFLGHKESGNPIEDLGRKFFQELRSRSFFQQSS--NNESRFVMHDLVNDLAQWAAG-----EIYFTMEYT 464 (1385)
Q Consensus 392 ~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~--~~~~~~~mhdlv~~~~~~~~~-----~~~~~~~~~ 464 (1385)
+.+|.+|+||||+.+.+.+.++++.|++|+.+||+++|++... .....|+|||+|||+|.|+++ ++..++...
T Consensus 431 e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~ 510 (889)
T KOG4658|consen 431 EKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDG 510 (889)
T ss_pred HHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECC
Confidence 9999999999999987778899999999999999999999866 356789999999999999999 555554432
Q ss_pred --ccccccccccccccEEEEEccccccccccccccCCCceeEecccccccCCCCCcccccccc-cccCCceeEEEEcCcc
Q 035550 465 --SEVNKQQSFSKTIRHLSYIRGFCDGVQRFEDLHDINHLRTFLPVTLSKSSCGHLARSILPK-LFKLQRLRVFSLRGYY 541 (1385)
Q Consensus 465 --~~~~~~~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~-~~~l~~Lr~L~L~~~~ 541 (1385)
.....+...+..+|+++++.+.... ...-...+.+++|++..... .+ ..++.. |..++.||||||++|.
T Consensus 511 ~~~~~~~~~~~~~~~rr~s~~~~~~~~---~~~~~~~~~L~tLll~~n~~----~l-~~is~~ff~~m~~LrVLDLs~~~ 582 (889)
T KOG4658|consen 511 VGLSEIPQVKSWNSVRRMSLMNNKIEH---IAGSSENPKLRTLLLQRNSD----WL-LEISGEFFRSLPLLRVLDLSGNS 582 (889)
T ss_pred cCccccccccchhheeEEEEeccchhh---ccCCCCCCccceEEEeecch----hh-hhcCHHHHhhCcceEEEECCCCC
Confidence 1111122334678999999876432 22334556799999876531 01 223333 5789999999999775
Q ss_pred -cccccccccCCccccEEecccccccccchhhhccCCccEEecCCCcchhhhhhcccccCCCCeeecCCCCCcccccCCC
Q 035550 542 -ISELPDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLDNLDTGSLEEMPLGI 620 (1385)
Q Consensus 542 -i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i 620 (1385)
+.++|++|++|.|||||+|+++.|+.+|.++++|++|.+|++..+..+..+|..+..|.+||+|.+.... ...-...+
T Consensus 583 ~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l 661 (889)
T KOG4658|consen 583 SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLL 661 (889)
T ss_pred ccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhH
Confidence 7899999999999999999999999999999999999999999987777777777889999999997763 11111225
Q ss_pred CcccccccccceEecCCCCcChhhhccccccc---ceeEEeccCCCCCcchhHHhhcCCCCCCceEEEEEccCCCCCCch
Q 035550 621 GKLTCLQTLCNFVVGKDSGSGIRELKLLTHLR---GTLNISKLENVKDIGDAKEAQLDGKKNLKVLKFQWTQSTNDLSSR 697 (1385)
Q Consensus 621 ~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~---~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 697 (1385)
+.+.+|++|..+.....+...+..+..+..|+ ..+.+.. .........+..+.+|+.|.+..+.........
T Consensus 662 ~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~-----~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~ 736 (889)
T KOG4658|consen 662 KELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEG-----CSKRTLISSLGSLGNLEELSILDCGISEIVIEW 736 (889)
T ss_pred HhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcc-----cccceeecccccccCcceEEEEcCCCchhhccc
Confidence 55666666665555444432223333333333 1111100 111222334555666666666555442111000
Q ss_pred hhhhHHhhcccCC---CCCCccceEEeccCCCCCCcccCCCCcccccEEEeeCCCCCCC-CCCCCCCCCCCeEEEcCCcC
Q 035550 698 EAETEKDVLVMLK---PHENLEQFCISGYEGKEFPTWLGDSSFSNLATLKFEDCGVCTT-LPSVGQLPSLKHLEVRGMRR 773 (1385)
Q Consensus 698 ~~~~~~~~l~~l~---~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~-l~~l~~l~~L~~L~L~~~~~ 773 (1385)
..... ..+++..+.+.++.....+.|... .++|+.|.+..|...+. +|....+..++.+.
T Consensus 737 --------~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f--~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i------ 800 (889)
T KOG4658|consen 737 --------EESLIVLLCFPNLSKVSILNCHMLRDLTWLLF--APHLTSLSLVSCRLLEDIIPKLKALLELKELI------ 800 (889)
T ss_pred --------ccccchhhhHHHHHHHHhhccccccccchhhc--cCcccEEEEecccccccCCCHHHHhhhcccEE------
Confidence 00000 122333334444444444444421 45556666655554332 22333333333322
Q ss_pred ceEeCccccCCCCCCCCCCccee-ecccccccccccccccCCccccCccccEEeecCCcCcccCCCCCCCCccEEEEccc
Q 035550 774 VKSLGSEFYGNDSPIPFPCLETL-CFEDMQEWEDWIPLRSGQGVEGFRKLRELHIISCSKLQGTFPEHLPALEMLVIGGC 852 (1385)
Q Consensus 774 l~~i~~~~~~~~~~~~f~~L~~L-~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~c 852 (1385)
.+|..++.+ .+.+.+.+..+... .-.+++|+.+.+..||++. . +|.+.++.+.+|
T Consensus 801 --------------~~f~~~~~l~~~~~l~~l~~i~~~-----~l~~~~l~~~~ve~~p~l~-~----~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 801 --------------LPFNKLEGLRMLCSLGGLPQLYWL-----PLSFLKLEELIVEECPKLG-K----LPLLSTLTIVGC 856 (889)
T ss_pred --------------ecccccccceeeecCCCCceeEec-----ccCccchhheehhcCcccc-c----Cccccccceecc
Confidence 235555555 35555555544331 0145668888888888775 3 445555666665
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.8e-65 Score=669.42 Aligned_cols=519 Identities=20% Similarity=0.268 Sum_probs=356.7
Q ss_pred HHHHHHHHHHHHHHHhcccccCcccccC------CCCccCCCccCcccCccCCeeeechhHHHHHHHHHhcCCcCCCCCc
Q 035550 71 MSKIKEINGRFQDIVTQKDSLGLNVSSV------GRSKKDRQRLPTTSLVNEAKVYGRETEKKEIVELLLRDDLRNDGEF 144 (1385)
Q Consensus 71 ~~~i~~~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~ 144 (1385)
..++++|++.+.+++...+ +.+..... ..+.........++......+|||+++++++..+|... ..++
T Consensus 133 ~~~~~~w~~al~~~~~~~g-~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~----~~~~ 207 (1153)
T PLN03210 133 EDEKIQWKQALTDVANILG-YHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLE----SEEV 207 (1153)
T ss_pred hhHHHHHHHHHHHHhCcCc-eecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccc----cCce
Confidence 3578999999999988754 22111110 01111111222223334567999999999999988533 3468
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEe---CCC-----------CC-HHHHHHHHHHHhcCCCCCCccC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCV---SDD-----------FD-VIRLTKSILLSIASDQIVDNHD 209 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~-----------~~-~~~~~~~i~~~~~~~~~~~~~~ 209 (1385)
++|+||||||+||||||+++|+ ++..+|+..+|+.. +.. +. ...++++++.++..........
T Consensus 208 ~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~ 285 (1153)
T PLN03210 208 RMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH 285 (1153)
T ss_pred EEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC
Confidence 9999999999999999999998 57778988888742 111 01 2345556666654433211111
Q ss_pred HHHHHHHHHhHcCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchhHhhhhCCCCcccCCCCChhhhHHH
Q 035550 210 LNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQGVAAIMGTAPAYQLKKLSNDDCLSV 289 (1385)
Q Consensus 210 ~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~~~~~l 289 (1385)
...+++.++++|+||||||||+. .+|+.+.....+.++||+||||||++.++..++..++|+++.+++++||+|
T Consensus 286 ----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~L 359 (1153)
T PLN03210 286 ----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEM 359 (1153)
T ss_pred ----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHH
Confidence 14577888999999999999765 679988887777789999999999999998877778999999999999999
Q ss_pred hhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHHhhhhcCCCCHHHHHHHHhhhhhhhccccccchHHHHHhhhcC
Q 035550 290 FAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKDDRREWEDVLSSKIWELQEERCDIIPALRVSYYYL 369 (1385)
Q Consensus 290 f~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L 369 (1385)
|+++||+.. .+++++++++++|+++|+|+||||+++|++|+++ +..+|+.++++..+.. ...|.++|++||++|
T Consensus 360 F~~~Af~~~--~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~---~~~I~~~L~~SYd~L 433 (1153)
T PLN03210 360 FCRSAFKKN--SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGL---DGKIEKTLRVSYDGL 433 (1153)
T ss_pred HHHHhcCCC--CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCc---cHHHHHHHHHhhhcc
Confidence 999999764 2456789999999999999999999999999987 6889999998765433 347999999999999
Q ss_pred Ch-hhhhhhhhhcccCCCcccChHHHHHHHHHcCCCccCCCCCcHHHHHHHHHHHHHHcCCccccCCCCCeEEEchhHHH
Q 035550 370 SA-PLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLGHKESGNPIEDLGRKFFQELRSRSFFQQSSNNESRFVMHDLVND 448 (1385)
Q Consensus 370 ~~-~~k~cf~~~~~fp~~~~~~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~mhdlv~~ 448 (1385)
++ ..|.||+++|+||+++.++ .+..|++.+.... +..++.|+++||++... .++.|||++|+
T Consensus 434 ~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~~---~~~~MHdLl~~ 496 (1153)
T PLN03210 434 NNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIGLKNLVDKSLIHVRE---DIVEMHSLLQE 496 (1153)
T ss_pred CccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhChHHHHhcCCEEEcC---CeEEhhhHHHH
Confidence 87 5999999999999987553 4677887765432 12388999999998753 47999999999
Q ss_pred HHHhhccceE-------EEeeccc--cccccccccccccEEEEEcccccccc-ccccccCCCceeEecccccccCCCCCc
Q 035550 449 LAQWAAGEIY-------FTMEYTS--EVNKQQSFSKTIRHLSYIRGFCDGVQ-RFEDLHDINHLRTFLPVTLSKSSCGHL 518 (1385)
Q Consensus 449 ~~~~~~~~~~-------~~~~~~~--~~~~~~~~~~~~r~ls~~~~~~~~~~-~~~~~~~~~~Lr~l~~~~~~~~~~~~~ 518 (1385)
||++++.++. +.+.... ...........++++++......... ....+.++.+|+.|.+...........
T Consensus 497 ~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~ 576 (1153)
T PLN03210 497 MGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEV 576 (1153)
T ss_pred HHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccc
Confidence 9999986543 2221100 00011122345666665433222111 122345566666665543210000112
Q ss_pred ccccccccccC-CceeEEEEcCcccccccccccCCccccEEecccccccccchhhhccCCccEEecCCCcchhhhhhccc
Q 035550 519 ARSILPKLFKL-QRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMG 597 (1385)
Q Consensus 519 ~~~~~~~~~~l-~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~ 597 (1385)
...+|..+..+ ..||+|++.++.++.+|..| .+.+|++|+|++|++..+|..+..+++|++|+|++|..+..+|. ++
T Consensus 577 ~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls 654 (1153)
T PLN03210 577 RWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LS 654 (1153)
T ss_pred eeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cc
Confidence 22344555443 45777777777777777666 45777777777777777777777777777777777666666663 66
Q ss_pred ccCCCCeeecCCCCCcccccCCCCcccccc
Q 035550 598 NLIKLHHLDNLDTGSLEEMPLGIGKLTCLQ 627 (1385)
Q Consensus 598 ~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~ 627 (1385)
.+++|++|++.+|..+..+|..+++|++|+
T Consensus 655 ~l~~Le~L~L~~c~~L~~lp~si~~L~~L~ 684 (1153)
T PLN03210 655 MATNLETLKLSDCSSLVELPSSIQYLNKLE 684 (1153)
T ss_pred cCCcccEEEecCCCCccccchhhhccCCCC
Confidence 677777777777655555554444443333
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.5e-41 Score=383.61 Aligned_cols=279 Identities=38% Similarity=0.658 Sum_probs=226.5
Q ss_pred chhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcC
Q 035550 122 RETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIAS 201 (1385)
Q Consensus 122 r~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 201 (1385)
||+++++|.++|.... .+.++|+|+||||+||||||++++++..++.+|+.++|+.++...+..+++++|+.++..
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7999999999998742 468999999999999999999999976688999999999999999999999999999988
Q ss_pred CCCC--CccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchhHhhhhCC-CCcccC
Q 035550 202 DQIV--DNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQGVAAIMGT-APAYQL 278 (1385)
Q Consensus 202 ~~~~--~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~-~~~~~l 278 (1385)
.... ...+.+.....+.+.|+++++||||||||+. ..|+.+...++....|++||||||+..++..+.. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 7431 4567788999999999999999999999776 6898888888877789999999999999887654 578999
Q ss_pred CCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHHhhhhcCCCCHHHHHHHHhhhhhhhcc---cc
Q 035550 279 KKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKDDRREWEDVLSSKIWELQE---ER 355 (1385)
Q Consensus 279 ~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~---~~ 355 (1385)
++|+.+||++||.+.++... ....+..++.+++|+++|+|+||||+++|++|+.+....+|..+++...+...+ ..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987655 123344567899999999999999999999997665778899998875555432 34
Q ss_pred ccchHHHHHhhhcCChhhhhhhhhhcccCCCcccChHHHHHHHHHcCCCccC
Q 035550 356 CDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLGHK 407 (1385)
Q Consensus 356 ~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~~~~~~li~~w~a~g~~~~~ 407 (1385)
..+..++.+||+.||++.|+||+|||+||+++.|+++.++++|+++||+...
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 6789999999999999999999999999999999999999999999999764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.1e-38 Score=419.00 Aligned_cols=130 Identities=18% Similarity=0.135 Sum_probs=93.3
Q ss_pred cccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeec
Q 035550 1138 SSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTI 1217 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L 1217 (1385)
+.|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+ ..++|+.|++++|.+.+.+|..+.++++|+.|++
T Consensus 428 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L 506 (968)
T PLN00113 428 PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKL 506 (968)
T ss_pred CCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEEC
Confidence 467778888777777777777777778888888877776666544 3467777888887777777777777777888888
Q ss_pred cccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEeccc
Q 035550 1218 GIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGC 1272 (1385)
Q Consensus 1218 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 1272 (1385)
++|.+.+.+|..++.+++|++|+|++|..... .|..+..+++|+.|+|++|
T Consensus 507 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N 557 (968)
T PLN00113 507 SENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ----IPASFSEMPVLSQLDLSQN 557 (968)
T ss_pred cCCcceeeCChHHcCccCCCEEECCCCccccc----CChhHhCcccCCEEECCCC
Confidence 87777777777777777777777777764322 2244566666777766665
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1e-36 Score=404.46 Aligned_cols=227 Identities=18% Similarity=0.145 Sum_probs=153.2
Q ss_pred ccccEEEeccCCCCCcCcccccCCCCccEEEeccCCCcccccC-ccCccccceEEeecCCCCCCCCcccccCCCCCcceE
Q 035550 972 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE-VALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEIL 1050 (1385)
Q Consensus 972 ~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 1050 (1385)
++|+.|++++|.....+|..+..+++|+.|++++|.....+|. +..+++|+.|++++|.....+|..+ ..+++|+.|
T Consensus 380 ~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L 457 (968)
T PLN00113 380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK--WDMPSLQML 457 (968)
T ss_pred CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh--ccCCCCcEE
Confidence 4566666666666666666666666777777766654444442 4456666666666666555554433 234566666
Q ss_pred EeecCCCCccccccCCCCCcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchhhhc
Q 035550 1051 NIEDCHSLTYIAAVQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPATLES 1130 (1385)
Q Consensus 1051 ~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~ 1130 (1385)
++++|.....++.....++|+.|++++|..... .|..+..
T Consensus 458 ~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~----------------------------------------~~~~~~~ 497 (968)
T PLN00113 458 SLARNKFFGGLPDSFGSKRLENLDLSRNQFSGA----------------------------------------VPRKLGS 497 (968)
T ss_pred ECcCceeeeecCcccccccceEEECcCCccCCc----------------------------------------cChhhhh
Confidence 666666544444333334555555555532111 1222222
Q ss_pred cccCCCCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCC
Q 035550 1131 LEVGNLPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLT 1210 (1385)
Q Consensus 1131 l~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~ 1210 (1385)
+ ++|+.|++++|.+.+.+|..+.++++|++|+|++|.+.+.+|..+..+++|++|+|++|.+.+.+|..+.+++
T Consensus 498 l------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 571 (968)
T PLN00113 498 L------SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVE 571 (968)
T ss_pred h------hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCc
Confidence 2 5788889999988888888888899999999999998888888888889999999999998888898888899
Q ss_pred ccceeeccccCCCCCCcccCCCCCCcceeEecCCcch
Q 035550 1211 SLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEI 1247 (1385)
Q Consensus 1211 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~ 1247 (1385)
+|+.|++++|++.+.+|. .+.+.++....+.+|+..
T Consensus 572 ~L~~l~ls~N~l~~~~p~-~~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 572 SLVQVNISHNHLHGSLPS-TGAFLAINASAVAGNIDL 607 (968)
T ss_pred ccCEEeccCCcceeeCCC-cchhcccChhhhcCCccc
Confidence 999999999998888884 344555555566666533
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=1.7e-28 Score=255.87 Aligned_cols=275 Identities=22% Similarity=0.226 Sum_probs=166.3
Q ss_pred chhhhccCccceEeecCCCCcccchhhhhhHHHHHhhhccccccEEEeccCCCCCcCcccccCCCCccEEEeccCCCccc
Q 035550 932 NELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVS 1011 (1385)
Q Consensus 932 ~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~ 1011 (1385)
.++...++++..|++.+ ++++++|.+.. +..+|++||+|+|. +..+|..++++ .|+.|-+.+|+.-+.
T Consensus 245 ae~~~~L~~l~vLDLRd-Nklke~Pde~c---------lLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 245 AEHLKHLNSLLVLDLRD-NKLKEVPDEIC---------LLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRTI 312 (565)
T ss_pred HHHhcccccceeeeccc-cccccCchHHH---------HhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCchHHH
Confidence 34455677777778777 57787776532 23689999999987 56788889999 999999999974321
Q ss_pred ccCcc---CccccceEEe-------ecCCCC----CCCC-ccc-ccCCCCCcceEEeecCCCCcccccc--C--CCCCcc
Q 035550 1012 FPEVA---LPSKLKKVKI-------RECDAL----KSLP-EAW-RCDTNSSLEILNIEDCHSLTYIAAV--Q--LPPSLK 1071 (1385)
Q Consensus 1012 ~~~~~---~~~~L~~L~l-------~~~~~l----~~~~-~~~-~~~~~~~L~~L~l~~~~~l~~~~~~--~--~~~~L~ 1071 (1385)
-.+.. -..-|++|.= +.-..- ...| ..+ .....-+.+.|++++-. ++.+|.- . .-.-..
T Consensus 313 Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q-lt~VPdEVfea~~~~~Vt 391 (565)
T KOG0472|consen 313 RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ-LTLVPDEVFEAAKSEIVT 391 (565)
T ss_pred HHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc-cccCCHHHHHHhhhcceE
Confidence 11110 0111222211 100000 0001 000 00122356666666533 2222210 0 000122
Q ss_pred eEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchhhhccccCCCCcccceeEEcccCcc
Q 035550 1072 QLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPATLESLEVGNLPSSLKSLVVWSCSKL 1151 (1385)
Q Consensus 1072 ~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~ 1151 (1385)
..+++.++ +.. +|..+..+ ..+.+.-+..+++.
T Consensus 392 ~VnfskNq-L~e----------------------------------------lPk~L~~l------kelvT~l~lsnn~i 424 (565)
T KOG0472|consen 392 SVNFSKNQ-LCE----------------------------------------LPKRLVEL------KELVTDLVLSNNKI 424 (565)
T ss_pred EEecccch-Hhh----------------------------------------hhhhhHHH------HHHHHHHHhhcCcc
Confidence 33333331 111 11111111 23333444556677
Q ss_pred hhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeeccccCCCCCCcccCC
Q 035550 1152 ESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIGGALPSLEEEDG 1231 (1385)
Q Consensus 1152 ~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 1231 (1385)
+.+|..+..+++|..|+|++|. +..+|..++.+..|+.|+|+.|. ...+|..+..+..|+.+-.+.|++...-|..+.
T Consensus 425 sfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~ 502 (565)
T KOG0472|consen 425 SFVPLELSQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSFNR-FRMLPECLYELQTLETLLASNNQIGSVDPSGLK 502 (565)
T ss_pred ccchHHHHhhhcceeeecccch-hhhcchhhhhhhhhheecccccc-cccchHHHhhHHHHHHHHhccccccccChHHhh
Confidence 8888888889999999998877 88888888888889999999985 667777777777777777777775555555578
Q ss_pred CCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccC
Q 035550 1232 LPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCD 1273 (1385)
Q Consensus 1232 ~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1273 (1385)
++.+|+.|||.+|.+. ..|..+.++++|++|+++||.
T Consensus 503 nm~nL~tLDL~nNdlq-----~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 503 NMRNLTTLDLQNNDLQ-----QIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhhcceeccCCCchh-----hCChhhccccceeEEEecCCc
Confidence 8888999999888733 334567888888888888864
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=5.3e-28 Score=252.25 Aligned_cols=399 Identities=22% Similarity=0.250 Sum_probs=223.8
Q ss_pred cccccccCCceeEEEEcCcccccccccccCCccccEEecccccccccchhhhccCCccEEecCCCcchhhhhhcccccCC
Q 035550 522 ILPKLFKLQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIK 601 (1385)
Q Consensus 522 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 601 (1385)
+.+++.++..|.||++++|.+.++|.+++.+..++.|+.++|++.++|+.++.+.+|..|+.++| .+.++|++|+.+..
T Consensus 60 l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~ 138 (565)
T KOG0472|consen 60 LREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLD 138 (565)
T ss_pred ccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHhh
Confidence 34566788889999999999999999999999999999999999999999999999999999986 67888999999999
Q ss_pred CCeeecCCCCCcccccCCCCcccccccccceEecCCCCcChhhhcccccccceeEEeccCCCCCcchhHHhhcCCCCCCc
Q 035550 602 LHHLDNLDTGSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGIRELKLLTHLRGTLNISKLENVKDIGDAKEAQLDGKKNLK 681 (1385)
Q Consensus 602 L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~ 681 (1385)
|..|+..+| .+..+|.+++.+.+|..|..-.. . ..+.+...-.++.|+
T Consensus 139 l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n------------------------~-------l~~l~~~~i~m~~L~ 186 (565)
T KOG0472|consen 139 LEDLDATNN-QISSLPEDMVNLSKLSKLDLEGN------------------------K-------LKALPENHIAMKRLK 186 (565)
T ss_pred hhhhhcccc-ccccCchHHHHHHHHHHhhcccc------------------------c-------hhhCCHHHHHHHHHH
Confidence 999988888 78888988888777766621100 0 001111111134444
Q ss_pred eEEEEEccCCCCCCchhhhhHHhhcccCCCCCCccceEEeccCCCCCCcccCCCCcccccEEEeeCCCCCCCCC--CCCC
Q 035550 682 VLKFQWTQSTNDLSSREAETEKDVLVMLKPHENLEQFCISGYEGKEFPTWLGDSSFSNLATLKFEDCGVCTTLP--SVGQ 759 (1385)
Q Consensus 682 ~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~ 759 (1385)
+|+...|.... ..+.++.+..|+.|++..|.+..+|++ +.++.|+.|++..|.+ +.+| ...+
T Consensus 187 ~ld~~~N~L~t------------lP~~lg~l~~L~~LyL~~Nki~~lPef---~gcs~L~Elh~g~N~i-~~lpae~~~~ 250 (565)
T KOG0472|consen 187 HLDCNSNLLET------------LPPELGGLESLELLYLRRNKIRFLPEF---PGCSLLKELHVGENQI-EMLPAEHLKH 250 (565)
T ss_pred hcccchhhhhc------------CChhhcchhhhHHHHhhhcccccCCCC---CccHHHHHHHhcccHH-HhhHHHHhcc
Confidence 44443332211 112233344455555555555444432 1244455555544443 2223 2334
Q ss_pred CCCCCeEEEcCCcCceEeCccccCCCCCCCCCCcceeecccccccccccccccCCccccCccccEEeecCCcCcccCCCC
Q 035550 760 LPSLKHLEVRGMRRVKSLGSEFYGNDSPIPFPCLETLCFEDMQEWEDWIPLRSGQGVEGFRKLRELHIISCSKLQGTFPE 839 (1385)
Q Consensus 760 l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~ 839 (1385)
++++..|++..|+ +++.+. +..-+.+|++|+++++ .++ .+|.
T Consensus 251 L~~l~vLDLRdNk-lke~Pd-----------------------------------e~clLrsL~rLDlSNN-~is-~Lp~ 292 (565)
T KOG0472|consen 251 LNSLLVLDLRDNK-LKEVPD-----------------------------------EICLLRSLERLDLSNN-DIS-SLPY 292 (565)
T ss_pred cccceeeeccccc-cccCch-----------------------------------HHHHhhhhhhhcccCC-ccc-cCCc
Confidence 5555555555432 222221 2224677888888888 666 6776
Q ss_pred CCCCc--cEEEEccccCccccCCCCCcccEEEEccCCchhhcccccccCCCcc-cccccCCccccc---cCc-ccccCCC
Q 035550 840 HLPAL--EMLVIGGCEELLVSVASLPALCKIEIGGCKKVVWRSATDHLGSQNS-VVCRDTSNQVFL---AGP-LKQRIPK 912 (1385)
Q Consensus 840 ~l~~L--~~L~l~~c~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~-~~~~l~~ 912 (1385)
.+++| +.|.+.|++ +..++.--++ |.--..+. +..+ ..+-..+....- .+. .+..|+
T Consensus 293 sLgnlhL~~L~leGNP--------lrTiRr~ii~-~gT~~vLK------yLrs~~~~dglS~se~~~e~~~t~~~~~~~- 356 (565)
T KOG0472|consen 293 SLGNLHLKFLALEGNP--------LRTIRREIIS-KGTQEVLK------YLRSKIKDDGLSQSEGGTETAMTLPSESFP- 356 (565)
T ss_pred ccccceeeehhhcCCc--------hHHHHHHHHc-ccHHHHHH------HHHHhhccCCCCCCcccccccCCCCCCccc-
Confidence 55544 444444432 1111110000 00000000 0000 000000000000 000 000111
Q ss_pred ccEEEEecccCccccccccchhhhccCccceEeecCCCCcccchhhhhhHHHHHhhhccccccEEEeccCCCCCcCcccc
Q 035550 913 LEELEIKNIKNETHIWKSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSS 992 (1385)
Q Consensus 913 L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~l~~l~~~~ 992 (1385)
....+-+.+.|++++ .+++.+|.+.+...-.+ -....+++.|+ +..+|..+
T Consensus 357 ---------------------~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~------~Vt~VnfskNq-L~elPk~L 407 (565)
T KOG0472|consen 357 ---------------------DIYAIITTKILDVSD-KQLTLVPDEVFEAAKSE------IVTSVNFSKNQ-LCELPKRL 407 (565)
T ss_pred ---------------------chhhhhhhhhhcccc-cccccCCHHHHHHhhhc------ceEEEecccch-Hhhhhhhh
Confidence 123445666777766 56777877766554322 36788888887 56678777
Q ss_pred cCCCCccEEEeccCCCcccccC-ccCccccceEEeecCCCCCCCCcccccCCCCCcceEEeecC
Q 035550 993 LSLSSLREIEIYKCSSLVSFPE-VALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEILNIEDC 1055 (1385)
Q Consensus 993 ~~l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 1055 (1385)
..+..+.+.-+..++.+..+|. ...+++|..|++++|. +..+|..++.. ..|+.|+++.|
T Consensus 408 ~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e~~~l--v~Lq~LnlS~N 468 (565)
T KOG0472|consen 408 VELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEEMGSL--VRLQTLNLSFN 468 (565)
T ss_pred HHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcchhhhhh--hhhheeccccc
Confidence 7777666665555656555553 4556777788887776 67777655322 24555555555
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=6.8e-27 Score=269.88 Aligned_cols=244 Identities=23% Similarity=0.240 Sum_probs=166.3
Q ss_pred cccccEEEeccCCCCCcCcccccCCCCccEEEeccCCCcccccC-ccCccccceEEeecCCCCCCCCcccccCCCCCcce
Q 035550 971 SCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE-VALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEI 1049 (1385)
Q Consensus 971 ~~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 1049 (1385)
+.+|++++++.++ +..+|.++..+.+|+.++..+|. +..+|. .....+|+.|.+..|. ++.+|... ....+|++
T Consensus 240 p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~l--e~~~sL~t 314 (1081)
T KOG0618|consen 240 PLNLQYLDISHNN-LSNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYNE-LEYIPPFL--EGLKSLRT 314 (1081)
T ss_pred cccceeeecchhh-hhcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcc--cccceeee
Confidence 3578888888876 45677888888888888888884 455553 5556778888888887 66666543 33457888
Q ss_pred EEeecCCCCcccccc-CC-CCCcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchh
Q 035550 1050 LNIEDCHSLTYIAAV-QL-PPSLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPAT 1127 (1385)
Q Consensus 1050 L~l~~~~~l~~~~~~-~~-~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~ 1127 (1385)
|++..|.....+..+ .. ..+|..|+.+.+ .+..++.
T Consensus 315 LdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp~----------------------------------------- 352 (1081)
T KOG0618|consen 315 LDLQSNNLPSLPDNFLAVLNASLNTLNVSSN-KLSTLPS----------------------------------------- 352 (1081)
T ss_pred eeehhccccccchHHHhhhhHHHHHHhhhhc-ccccccc-----------------------------------------
Confidence 888877633222110 00 111222222221 1111110
Q ss_pred hhccccCCCCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCC-CCCccCcceEEeccccCcccccccC
Q 035550 1128 LESLEVGNLPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEG-GLPCVKLRMLAITNCKRLEALPKGL 1206 (1385)
Q Consensus 1128 l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~-~~~l~~L~~L~L~~n~~~~~lp~~l 1206 (1385)
.-....+.|+.|++.+|......-..+.++..|+.|+|++|. ++.+|.. +.++..|++|+||||+ +..+|..+
T Consensus 353 ----~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tv 426 (1081)
T KOG0618|consen 353 ----YEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNK-LTTLPDTV 426 (1081)
T ss_pred ----ccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccch-hhhhhHHH
Confidence 000111578999999999888776678889999999999998 6777764 5578899999999997 78888888
Q ss_pred CCCCccceeeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccC
Q 035550 1207 HNLTSLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCD 1273 (1385)
Q Consensus 1207 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1273 (1385)
.+++.|++|...+|+ +..+| .+..++.|+.+|+|.|.+....... ....++|++||++||.
T Consensus 427 a~~~~L~tL~ahsN~-l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~----~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 427 ANLGRLHTLRAHSNQ-LLSFP-ELAQLPQLKVLDLSCNNLSEVTLPE----ALPSPNLKYLDLSGNT 487 (1081)
T ss_pred HhhhhhHHHhhcCCc-eeech-hhhhcCcceEEecccchhhhhhhhh----hCCCcccceeeccCCc
Confidence 899999999998887 45566 7788999999999998754433221 1112788999999874
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.2e-24 Score=237.66 Aligned_cols=110 Identities=15% Similarity=0.055 Sum_probs=68.6
Q ss_pred cccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCC---CCCCccCcceEEeccccCcccccccCCCCCccce
Q 035550 1138 SSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPE---GGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQE 1214 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~---~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~ 1214 (1385)
+.|++|+|++|++...--..|..+.+|++|||++|.+...+.+ .|..+++|+.|++.+|++-..--..|.++++|+.
T Consensus 341 ~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 341 SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEH 420 (873)
T ss_pred HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccce
Confidence 3566666666655554455566677777777777765544332 3445677777777777633333346777777777
Q ss_pred eeccccCCCCCCcccCCCCCCcceeEecCCcchh
Q 035550 1215 LTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIW 1248 (1385)
Q Consensus 1215 L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~ 1248 (1385)
|+|.+|.+...-|+.|..+ +|++|.+..-.+++
T Consensus 421 LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflC 453 (873)
T KOG4194|consen 421 LDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLC 453 (873)
T ss_pred ecCCCCcceeecccccccc-hhhhhhhcccceEE
Confidence 7777777766666666655 77777665544433
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=9.9e-26 Score=260.33 Aligned_cols=101 Identities=35% Similarity=0.386 Sum_probs=82.5
Q ss_pred ccCCceeEEEEcCcccccccccccCCccccEEecccccccccchhhhccCCccEEecCCCcchhhhhhcccccCCCCeee
Q 035550 527 FKLQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLD 606 (1385)
Q Consensus 527 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 606 (1385)
.+.-+|++||+++|.+...|..+..+.+|+.|+++.|.|...|.+++++.+|++|.|.+| .+..+|.++..+++|++|+
T Consensus 42 ~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 42 EKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLD 120 (1081)
T ss_pred hheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhcccccc
Confidence 334448999999999988898888899999999999999999988889999999999874 7888898999999999999
Q ss_pred cCCCCCcccccCCCCcccccccc
Q 035550 607 NLDTGSLEEMPLGIGKLTCLQTL 629 (1385)
Q Consensus 607 l~~~~~~~~lp~~i~~L~~L~~L 629 (1385)
++.| ....+|.-+..++.+..+
T Consensus 121 lS~N-~f~~~Pl~i~~lt~~~~~ 142 (1081)
T KOG0618|consen 121 LSFN-HFGPIPLVIEVLTAEEEL 142 (1081)
T ss_pred cchh-ccCCCchhHHhhhHHHHH
Confidence 9888 677777666555544433
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=6.9e-22 Score=261.02 Aligned_cols=314 Identities=21% Similarity=0.274 Sum_probs=169.4
Q ss_pred ccccEEEeccCCCCCcCcccccCCCCccEEEeccCCCcccccC-ccCccccceEEeecCCCCCCCCcccccCCCCCcceE
Q 035550 972 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE-VALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEIL 1050 (1385)
Q Consensus 972 ~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 1050 (1385)
++|+.|++.+++ ++.+|..+ .+.+|++|++.+| .+..+|. ...+++|+.|++++|..++.+|.. ..+++|+.|
T Consensus 589 ~~Lr~L~~~~~~-l~~lP~~f-~~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~l---s~l~~Le~L 662 (1153)
T PLN03210 589 PKLRLLRWDKYP-LRCMPSNF-RPENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDL---SMATNLETL 662 (1153)
T ss_pred cccEEEEecCCC-CCCCCCcC-CccCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCCcc---ccCCcccEE
Confidence 344455554443 23444333 2344555555444 2333332 333444555555544444444421 223445555
Q ss_pred EeecCCCCccccc-cCCCCCcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchhhh
Q 035550 1051 NIEDCHSLTYIAA-VQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPATLE 1129 (1385)
Q Consensus 1051 ~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~ 1129 (1385)
++++|..+..++. +..+++|+.|++++|.+++.+|.. ..+++|+.|++++|..+..+
T Consensus 663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-----------i~l~sL~~L~Lsgc~~L~~~----------- 720 (1153)
T PLN03210 663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-----------INLKSLYRLNLSGCSRLKSF----------- 720 (1153)
T ss_pred EecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-----------CCCCCCCEEeCCCCCCcccc-----------
Confidence 5555544433332 233445555555555555544321 12345555555555544322
Q ss_pred ccccCCCCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccc-------cCCCCCCccCcceEEeccccCcccc
Q 035550 1130 SLEVGNLPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVS-------FPEGGLPCVKLRMLAITNCKRLEAL 1202 (1385)
Q Consensus 1130 ~l~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~-------~~~~~~~l~~L~~L~L~~n~~~~~l 1202 (1385)
...+++|++|++++|.+ ..+|..+ .+++|++|++.++..... .+......++|+.|+|++|...+.+
T Consensus 721 ----p~~~~nL~~L~L~~n~i-~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l 794 (1153)
T PLN03210 721 ----PDISTNISWLDLDETAI-EEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL 794 (1153)
T ss_pred ----ccccCCcCeeecCCCcc-ccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcccc
Confidence 11224666666666653 3444433 456666666665431110 0111122356777777777767777
Q ss_pred cccCCCCCccceeeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhh
Q 035550 1203 PKGLHNLTSLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALE 1282 (1385)
Q Consensus 1203 p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 1282 (1385)
|..+.++++|+.|++++|..+..+|... .+++|+.|++++|..+.... ...++|+.|+|++|.. .
T Consensus 795 P~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p-------~~~~nL~~L~Ls~n~i--~----- 859 (1153)
T PLN03210 795 PSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP-------DISTNISDLNLSRTGI--E----- 859 (1153)
T ss_pred ChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc-------ccccccCEeECCCCCC--c-----
Confidence 7777777777777777776666666443 56777777777765432211 1235677777776532 1
Q ss_pred hhhccCcCCCCcccceeecccccccccccccCCCCCCCCeEeccCCCCCCCCCC
Q 035550 1283 DKRLGTALPLPASLTSLWIFNFPNLERLSSSIVDLQNLTELKLHNCPKLKYFPE 1336 (1385)
Q Consensus 1283 ~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 1336 (1385)
.++..+..+++|+.|++.+|+++..+|..+..+++|+.|++++|++++.++-
T Consensus 860 --~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 860 --EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred --cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence 1222334567788888888888888888888888888888888888876654
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=2.8e-24 Score=235.66 Aligned_cols=175 Identities=21% Similarity=0.305 Sum_probs=105.8
Q ss_pred CCceeEEEEcCcccc--cccccccCCccccEEecccccccccchhhhccCCccEEecCCCcchhhhhhcccccCCCCeee
Q 035550 529 LQRLRVFSLRGYYIS--ELPDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLD 606 (1385)
Q Consensus 529 l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 606 (1385)
++..|-.|+++|.++ .+|.+...++.++.|.|..+++..+|+.++.|.+|++|.+++| .+..+-.++..|+.||.+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHHHh
Confidence 445566667777665 5677777777777777777777777777777777777777775 4555555666666777766
Q ss_pred cCCCCCcc--cccCCCCcccccccccceEecCCCCcChhhhcccccccceeEEeccCCCCCcchhHHhhcCCCCCCceEE
Q 035550 607 NLDTGSLE--EMPLGIGKLTCLQTLCNFVVGKDSGSGIRELKLLTHLRGTLNISKLENVKDIGDAKEAQLDGKKNLKVLK 684 (1385)
Q Consensus 607 l~~~~~~~--~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~ 684 (1385)
+..| +++ .+|..|-+|. .|+.|+
T Consensus 85 ~R~N-~LKnsGiP~diF~l~------------------------------------------------------dLt~lD 109 (1255)
T KOG0444|consen 85 VRDN-NLKNSGIPTDIFRLK------------------------------------------------------DLTILD 109 (1255)
T ss_pred hhcc-ccccCCCCchhcccc------------------------------------------------------cceeee
Confidence 6666 222 3444333333 333333
Q ss_pred EEEccCCCCCCchhhhhHHhhcccCCCCCCccceEEeccCCCCCCcccCCCCcccccEEEeeCCCCCCCCCCCCCCCCCC
Q 035550 685 FQWTQSTNDLSSREAETEKDVLVMLKPHENLEQFCISGYEGKEFPTWLGDSSFSNLATLKFEDCGVCTTLPSVGQLPSLK 764 (1385)
Q Consensus 685 l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~ 764 (1385)
|+.|+.. ++...+..-.++-.|++++|.+..+|..++. ++..|-.|+|++|.+....|....+.+|+
T Consensus 110 LShNqL~------------EvP~~LE~AKn~iVLNLS~N~IetIPn~lfi-nLtDLLfLDLS~NrLe~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 110 LSHNQLR------------EVPTNLEYAKNSIVLNLSYNNIETIPNSLFI-NLTDLLFLDLSNNRLEMLPPQIRRLSMLQ 176 (1255)
T ss_pred cchhhhh------------hcchhhhhhcCcEEEEcccCccccCCchHHH-hhHhHhhhccccchhhhcCHHHHHHhhhh
Confidence 4333322 1222233344555666667777777766542 46777778888877655445666777777
Q ss_pred eEEEcCCc
Q 035550 765 HLEVRGMR 772 (1385)
Q Consensus 765 ~L~L~~~~ 772 (1385)
.|.|++|+
T Consensus 177 tL~Ls~NP 184 (1255)
T KOG0444|consen 177 TLKLSNNP 184 (1255)
T ss_pred hhhcCCCh
Confidence 77777664
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=7.1e-23 Score=223.93 Aligned_cols=361 Identities=17% Similarity=0.165 Sum_probs=230.8
Q ss_pred cceEeecCCCCcccchhhhhhHHHHHhhhccccccEEEeccCCCCCcCcccccCCCCccEEEeccCCCccccc--CccCc
Q 035550 941 LKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFP--EVALP 1018 (1385)
Q Consensus 941 L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~--~~~~~ 1018 (1385)
-+.|++++ +++..+....+... ++|+.+++.+|. ++.+|...+...+|+.|+|.+| .+.++. +...+
T Consensus 80 t~~Ldlsn-Nkl~~id~~~f~nl--------~nLq~v~l~~N~-Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l 148 (873)
T KOG4194|consen 80 TQTLDLSN-NKLSHIDFEFFYNL--------PNLQEVNLNKNE-LTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSAL 148 (873)
T ss_pred eeeeeccc-cccccCcHHHHhcC--------Ccceeeeeccch-hhhcccccccccceeEEeeecc-ccccccHHHHHhH
Confidence 34577776 45555544433222 677777777765 5667766666666777777777 444443 24556
Q ss_pred cccceEEeecCCCCCCCCcccccCCCCCcceEEeecCCCCccccc--cCCCCCcceEEeccCCCCccccccccccccccc
Q 035550 1019 SKLKKVKIRECDALKSLPEAWRCDTNSSLEILNIEDCHSLTYIAA--VQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSSS 1096 (1385)
Q Consensus 1019 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~ 1096 (1385)
+.|+.||++.|. +..+|..-. ..-+++++|++++|... .+.. +..+.+|..|.++++ .++.+|..
T Consensus 149 ~alrslDLSrN~-is~i~~~sf-p~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrN-rittLp~r--------- 215 (873)
T KOG4194|consen 149 PALRSLDLSRNL-ISEIPKPSF-PAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRN-RITTLPQR--------- 215 (873)
T ss_pred hhhhhhhhhhch-hhcccCCCC-CCCCCceEEeecccccc-ccccccccccchheeeecccC-cccccCHH---------
Confidence 777777777776 444443211 22246777888777632 2222 233446666777665 34444321
Q ss_pred ccccCCCccEEEeccCCCcccccccCCCchhhhccccCCCCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCcc
Q 035550 1097 RRYTSSLLEELHISSCQSLTCIFSKNELPATLESLEVGNLPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLV 1176 (1385)
Q Consensus 1097 ~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~ 1176 (1385)
.+..+++|+.|++..+.- .....+.+.++ ++|+.|.+..|.+...--..|..|.++++|+|+.|....
T Consensus 216 ~Fk~L~~L~~LdLnrN~i-----------rive~ltFqgL-~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 216 SFKRLPKLESLDLNRNRI-----------RIVEGLTFQGL-PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA 283 (873)
T ss_pred Hhhhcchhhhhhccccce-----------eeehhhhhcCc-hhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence 112256666666654321 11112233344 478888888887777666677788888888888888555
Q ss_pred ccCCCCCCccCcceEEeccccCcccccccCCCCCccceeeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCc
Q 035550 1177 SFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGR 1256 (1385)
Q Consensus 1177 ~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~ 1256 (1385)
.-..++.++++|+.|+|++|.+...-+.+++.+++|++|+|++|.+...-+..|..+..|++|+|+.|.+....- .
T Consensus 284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e----~ 359 (873)
T KOG4194|consen 284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE----G 359 (873)
T ss_pred hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh----h
Confidence 555567778888888888888777767777888888888888888777777777778888888888887442222 4
Q ss_pred cCCCCCccceEEecccCCccccchhhhhhccCcCCCCcccceeecccccccccccc-cCCCCCCCCeEeccCCCCCCCCC
Q 035550 1257 GFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLPASLTSLWIFNFPNLERLSS-SIVDLQNLTELKLHNCPKLKYFP 1335 (1385)
Q Consensus 1257 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~ 1335 (1385)
.|..+.+|++|||++|. .+..++| -...+..+++|+.|.+.++ ++.+||. .|..+..|++|||.+++ |.++-
T Consensus 360 af~~lssL~~LdLr~N~---ls~~IED--aa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Na-iaSIq 432 (873)
T KOG4194|consen 360 AFVGLSSLHKLDLRSNE---LSWCIED--AAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNA-IASIQ 432 (873)
T ss_pred HHHHhhhhhhhcCcCCe---EEEEEec--chhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCc-ceeec
Confidence 57778888888888863 2222322 3345566788888888884 7888876 77788888888888864 66664
Q ss_pred CCCC-CCccceeee
Q 035550 1336 EKGL-PSSLLQLQI 1348 (1385)
Q Consensus 1336 ~~~~-~~sL~~L~i 1348 (1385)
+..+ +..|+.|.+
T Consensus 433 ~nAFe~m~Lk~Lv~ 446 (873)
T KOG4194|consen 433 PNAFEPMELKELVM 446 (873)
T ss_pred ccccccchhhhhhh
Confidence 4333 346666654
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=2.6e-23 Score=228.17 Aligned_cols=363 Identities=18% Similarity=0.224 Sum_probs=239.4
Q ss_pred cccccCCccccccCcccccCCCccEEEEecccCccccccccchhhhccCccceEeecCCCCcccchhhhhhHHHHHhhhc
Q 035550 891 VVCRDTSNQVFLAGPLKQRIPKLEELEIKNIKNETHIWKSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCEL 970 (1385)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~ 970 (1385)
+...+.+.+.+..+.+|........+....+..- .+ ...+.-++.+.+|+.|.+.+ ++|.++..+ +..
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt-~L-~~vPeEL~~lqkLEHLs~~H-N~L~~vhGE-----Ls~---- 76 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRT-KL-EQVPEELSRLQKLEHLSMAH-NQLISVHGE-----LSD---- 76 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechh-hh-hhChHHHHHHhhhhhhhhhh-hhhHhhhhh-----hcc----
Confidence 3344556665666666665444433333322110 00 11234467788888888877 344443221 111
Q ss_pred cccccEEEeccCCCCC-cCcccccCCCCccEEEeccCCCcccccC-ccCccccceEEeecCCCCCCCCcccccCCCCCcc
Q 035550 971 SCRLEYLRLSNCEGLV-KLPQSSLSLSSLREIEIYKCSSLVSFPE-VALPSKLKKVKIRECDALKSLPEAWRCDTNSSLE 1048 (1385)
Q Consensus 971 ~~~L~~L~Ls~~~~l~-~l~~~~~~l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 1048 (1385)
.|+|+.+.+..|+.-. -+|..+..+.-|..|+||+| .++..|. .....++-.|++++|+ +.+||.... .++.-|-
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lf-inLtDLL 153 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLF-INLTDLL 153 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCc-cccCCchHH-HhhHhHh
Confidence 2689999999887543 38888889999999999999 5666664 6677888999999998 888887643 4556788
Q ss_pred eEEeecCCCCccccccCCCCCcceEEeccCCC----CcccccccccccccccccccCCCccEEEeccCCCcccccccCCC
Q 035550 1049 ILNIEDCHSLTYIAAVQLPPSLKQLEIYNCDN----IRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNEL 1124 (1385)
Q Consensus 1049 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~----L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~ 1124 (1385)
.|++++|..-..+|...-+..|++|.+++++. |+.+| ++++|+.|.+++... ...++
T Consensus 154 fLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP--------------smtsL~vLhms~TqR-----Tl~N~ 214 (1255)
T KOG0444|consen 154 FLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP--------------SMTSLSVLHMSNTQR-----TLDNI 214 (1255)
T ss_pred hhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCc--------------cchhhhhhhcccccc-----hhhcC
Confidence 89999988666666666677888899988862 22222 234556666555431 12345
Q ss_pred chhhhccccCCCCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccc
Q 035550 1125 PATLESLEVGNLPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPK 1204 (1385)
Q Consensus 1125 ~~~l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~ 1204 (1385)
|.++..+ .+|..+|++.|+ +..+|+++.++++|+.|+||+|. ++.+........+|++|+++.|+ +..+|.
T Consensus 215 Ptsld~l------~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~ 285 (1255)
T KOG0444|consen 215 PTSLDDL------HNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQ-LTVLPD 285 (1255)
T ss_pred CCchhhh------hhhhhccccccC-CCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccch-hccchH
Confidence 5555555 577777887763 45667777788888888888887 55555555666778888888887 677788
Q ss_pred cCCCCCccceeeccccCCC-CCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhh
Q 035550 1205 GLHNLTSLQELTIGIGGAL-PSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALED 1283 (1385)
Q Consensus 1205 ~l~~l~~L~~L~L~~n~~~-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 1283 (1385)
.+..|+.|+.|.+.+|.+. .-+|..+|.+.+|+++..++|... ..|.++++|..|+.|.|+.|
T Consensus 286 avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-----lVPEglcRC~kL~kL~L~~N----------- 349 (1255)
T KOG0444|consen 286 AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-----LVPEGLCRCVKLQKLKLDHN----------- 349 (1255)
T ss_pred HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-----cCchhhhhhHHHHHhccccc-----------
Confidence 8888888888888777654 347777777888888887777633 23456777777777777764
Q ss_pred hhccCcCCCCcccceeecccccccccccccCCCCCCCCeEeccCCCCCCCC
Q 035550 1284 KRLGTALPLPASLTSLWIFNFPNLERLSSSIVDLQNLTELKLHNCPKLKYF 1334 (1385)
Q Consensus 1284 ~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l 1334 (1385)
.+.++|..+.-++-|+.||+..+|++-.-
T Consensus 350 ----------------------rLiTLPeaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 350 ----------------------RLITLPEAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred ----------------------ceeechhhhhhcCCcceeeccCCcCccCC
Confidence 45556666666666666666666655543
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=3.8e-15 Score=180.93 Aligned_cols=257 Identities=28% Similarity=0.336 Sum_probs=156.2
Q ss_pred cccEEEeccCCCCCcCcccccCCCCccEEEeccCCCcccccCccCccccceEEeecCCCCCCCCcccccCCCCCcceEEe
Q 035550 973 RLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEILNI 1052 (1385)
Q Consensus 973 ~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 1052 (1385)
.-..|++++|. ++.+|..+. ++|+.|++.+| .++.+|. .+++|++|++++|. ++.+|.. .++|+.|++
T Consensus 202 ~~~~LdLs~~~-LtsLP~~l~--~~L~~L~L~~N-~Lt~LP~--lp~~Lk~LdLs~N~-LtsLP~l-----p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESG-LTTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPVL-----PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCC-CCcCCcchh--cCCCEEEccCC-cCCCCCC--CCCCCcEEEecCCc-cCcccCc-----ccccceeec
Confidence 45678888875 456776554 47888888887 5666774 46788888888875 6666642 357788888
Q ss_pred ecCCCCccccccCCCCCcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchhhhccc
Q 035550 1053 EDCHSLTYIAAVQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPATLESLE 1132 (1385)
Q Consensus 1053 ~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~l~ 1132 (1385)
++|. +..++. .+++|+.|++++| .++.++.
T Consensus 270 s~N~-L~~Lp~--lp~~L~~L~Ls~N-~Lt~LP~---------------------------------------------- 299 (788)
T PRK15387 270 FSNP-LTHLPA--LPSGLCKLWIFGN-QLTSLPV---------------------------------------------- 299 (788)
T ss_pred cCCc-hhhhhh--chhhcCEEECcCC-ccccccc----------------------------------------------
Confidence 7775 333332 3456777776665 2333321
Q ss_pred cCCCCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCcc
Q 035550 1133 VGNLPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSL 1212 (1385)
Q Consensus 1133 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L 1212 (1385)
.|++|+.|++++|.+.+ +|.. ..+|+.|++++|. ++.+|.. ..+|+.|+|++|.+. .+|.. .++|
T Consensus 300 ---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~-L~~LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L 364 (788)
T PRK15387 300 ---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQ-LTSLPTL---PSGLQELSVSDNQLA-SLPTL---PSEL 364 (788)
T ss_pred ---cccccceeECCCCcccc-CCCC---cccccccccccCc-ccccccc---ccccceEecCCCccC-CCCCC---Cccc
Confidence 12456666666664443 3321 2346666666666 3445531 136677777776633 45542 2456
Q ss_pred ceeeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCCC
Q 035550 1213 QELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPL 1292 (1385)
Q Consensus 1213 ~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~ 1292 (1385)
+.|++++|.+. .+|. .+.+|+.|++++|++... |. ..++|+.|++++|. +......
T Consensus 365 ~~L~Ls~N~L~-~LP~---l~~~L~~LdLs~N~Lt~L-----P~---l~s~L~~LdLS~N~------------LssIP~l 420 (788)
T PRK15387 365 YKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSL-----PV---LPSELKELMVSGNR------------LTSLPML 420 (788)
T ss_pred ceehhhccccc-cCcc---cccccceEEecCCcccCC-----CC---cccCCCEEEccCCc------------CCCCCcc
Confidence 66667666544 3443 235677777777763311 11 12467777777752 2222234
Q ss_pred CcccceeecccccccccccccCCCCCCCCeEeccCCCCCC
Q 035550 1293 PASLTSLWIFNFPNLERLSSSIVDLQNLTELKLHNCPKLK 1332 (1385)
Q Consensus 1293 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 1332 (1385)
+.+|+.|++++| +++.+|..+.++++|+.|+|++|+ +.
T Consensus 421 ~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~-Ls 458 (788)
T PRK15387 421 PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP-LS 458 (788)
T ss_pred hhhhhhhhhccC-cccccChHHhhccCCCeEECCCCC-CC
Confidence 456788888874 688899888899999999999876 44
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.56 E-value=1.9e-16 Score=166.65 Aligned_cols=101 Identities=26% Similarity=0.349 Sum_probs=69.2
Q ss_pred eeEEEEcCccccccc-ccccCCccccEEeccccccccc-chhhhccCCccEEecCCCcchhhhhhc-ccccCCCCeeecC
Q 035550 532 LRVFSLRGYYISELP-DSFGDLRYLRYLNLSLTEIRTL-PESVNKLYNLHTLLLEGCRRLKKLCAD-MGNLIKLHHLDNL 608 (1385)
Q Consensus 532 Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~l-P~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~ 608 (1385)
-..++|..|.|+.|| .+|+.+++||.||||+|.|+.+ |..|..|..|-.|-+.+++.++.+|.. |++|..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 445667777777776 5677777777777777777744 577777777777777665677777765 6777777777776
Q ss_pred CCCCcccccCC-CCcccccccccceE
Q 035550 609 DTGSLEEMPLG-IGKLTCLQTLCNFV 633 (1385)
Q Consensus 609 ~~~~~~~lp~~-i~~L~~L~~L~~~~ 633 (1385)
-| .+..++.+ +..|.+|..|..+.
T Consensus 149 an-~i~Cir~~al~dL~~l~lLslyD 173 (498)
T KOG4237|consen 149 AN-HINCIRQDALRDLPSLSLLSLYD 173 (498)
T ss_pred hh-hhcchhHHHHHHhhhcchhcccc
Confidence 66 55555544 56666666664443
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.54 E-value=5.1e-14 Score=171.27 Aligned_cols=256 Identities=27% Similarity=0.346 Sum_probs=181.3
Q ss_pred CCccEEEeccCCCcccccCccCccccceEEeecCCCCCCCCcccccCCCCCcceEEeecCCCCccccccCCCCCcceEEe
Q 035550 996 SSLREIEIYKCSSLVSFPEVALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEILNIEDCHSLTYIAAVQLPPSLKQLEI 1075 (1385)
Q Consensus 996 ~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l 1075 (1385)
..-..|++++| .++.+|. ..+++|+.|++.+|. ++.+|.. +++|++|++++|. ++.++. .+++|+.|++
T Consensus 201 ~~~~~LdLs~~-~LtsLP~-~l~~~L~~L~L~~N~-Lt~LP~l-----p~~Lk~LdLs~N~-LtsLP~--lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGES-GLTTLPD-CLPAHITTLVIPDNN-LTSLPAL-----PPELRTLEVSGNQ-LTSLPV--LPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCC-CCCcCCc-chhcCCCEEEccCCc-CCCCCCC-----CCCCcEEEecCCc-cCcccC--cccccceeec
Confidence 34567899988 6777886 234689999999887 6677742 4678888888874 333432 3456666666
Q ss_pred ccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchhhhccccCCCCcccceeEEcccCcchhhh
Q 035550 1076 YNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPATLESLEVGNLPSSLKSLVVWSCSKLESIA 1155 (1385)
Q Consensus 1076 ~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~~~~ 1155 (1385)
++|. +..+ ..+|++|+.|++++|.+. .+|
T Consensus 270 s~N~-L~~L-------------------------------------------------p~lp~~L~~L~Ls~N~Lt-~LP 298 (788)
T PRK15387 270 FSNP-LTHL-------------------------------------------------PALPSGLCKLWIFGNQLT-SLP 298 (788)
T ss_pred cCCc-hhhh-------------------------------------------------hhchhhcCEEECcCCccc-ccc
Confidence 6652 2222 123467899999998655 455
Q ss_pred hhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeeccccCCCCCCcccCCCCCC
Q 035550 1156 ERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIGGALPSLEEEDGLPTN 1235 (1385)
Q Consensus 1156 ~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~ 1235 (1385)
. .+++|+.|++++|. +..+|... .+|+.|++++|.+ +.+|.. .++|+.|+|++|.+. .+|. .+++
T Consensus 299 ~---~p~~L~~LdLS~N~-L~~Lp~lp---~~L~~L~Ls~N~L-~~LP~l---p~~Lq~LdLS~N~Ls-~LP~---lp~~ 363 (788)
T PRK15387 299 V---LPPGLQELSVSDNQ-LASLPALP---SELCKLWAYNNQL-TSLPTL---PSGLQELSVSDNQLA-SLPT---LPSE 363 (788)
T ss_pred c---cccccceeECCCCc-cccCCCCc---ccccccccccCcc-cccccc---ccccceEecCCCccC-CCCC---CCcc
Confidence 4 25789999999998 45566522 4688999999984 456642 258999999998865 4553 3578
Q ss_pred cceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCCCCcccceeecccccccccccccCC
Q 035550 1236 LQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLPASLTSLWIFNFPNLERLSSSIV 1315 (1385)
Q Consensus 1236 L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 1315 (1385)
|+.|++++|.+.. .|. ...+|+.|++++|. +......+++|+.|++++| .++.+|..
T Consensus 364 L~~L~Ls~N~L~~-----LP~---l~~~L~~LdLs~N~------------Lt~LP~l~s~L~~LdLS~N-~LssIP~l-- 420 (788)
T PRK15387 364 LYKLWAYNNRLTS-----LPA---LPSGLKELIVSGNR------------LTSLPVLPSELKELMVSGN-RLTSLPML-- 420 (788)
T ss_pred cceehhhcccccc-----Ccc---cccccceEEecCCc------------ccCCCCcccCCCEEEccCC-cCCCCCcc--
Confidence 9999999997542 112 23579999999863 3333335678999999996 68888854
Q ss_pred CCCCCCeEeccCCCCCCCCCCC-CCCCccceeeecCChh
Q 035550 1316 DLQNLTELKLHNCPKLKYFPEK-GLPSSLLQLQIVGCPL 1353 (1385)
Q Consensus 1316 ~l~~L~~L~l~~c~~l~~l~~~-~~~~sL~~L~i~~c~~ 1353 (1385)
..+|+.|++++| +++.+|.. +-.++|+.|+++++|.
T Consensus 421 -~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 421 -PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred -hhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCC
Confidence 357889999995 69999873 3357899999999974
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.50 E-value=3.6e-16 Score=164.58 Aligned_cols=94 Identities=22% Similarity=0.295 Sum_probs=79.2
Q ss_pred EEEEcCcccccccccccCCccccEEecccccccccc-hhhhccCCccEEecCCCcchhhhhhcccccCCCCeeecCCCCC
Q 035550 534 VFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLP-ESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLDNLDTGS 612 (1385)
Q Consensus 534 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 612 (1385)
..+.++-.++++|..+. ..-..++|..|+|+.+| .+|+.+++|+.|||++|..-..-|..|..|.+|-.|-+.+++.
T Consensus 50 ~VdCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred eEEccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 34566667888887664 35677899999999999 6789999999999999865566688899999999998888669
Q ss_pred cccccCC-CCcccccccc
Q 035550 613 LEEMPLG-IGKLTCLQTL 629 (1385)
Q Consensus 613 ~~~lp~~-i~~L~~L~~L 629 (1385)
++++|.+ |+.|.+||.|
T Consensus 128 I~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred hhhhhhhHhhhHHHHHHH
Confidence 9999988 8999999888
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.42 E-value=4.4e-13 Score=164.74 Aligned_cols=95 Identities=24% Similarity=0.449 Sum_probs=53.0
Q ss_pred ccccEEEeccCCCCCcCcccccCCCCccEEEeccCCCcccccCccCccccceEEeecCCCCCCCCcccccCCCCCcceEE
Q 035550 972 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEILN 1051 (1385)
Q Consensus 972 ~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 1051 (1385)
+.|+.|+|++|. +..+|..+. ++|++|++++| .++.+|. ..+++|+.|++++|. +..+|..+. ++|+.|+
T Consensus 199 ~~L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~-~l~~~L~~L~Ls~N~-L~~LP~~l~----s~L~~L~ 268 (754)
T PRK15370 199 EQITTLILDNNE-LKSLPENLQ--GNIKTLYANSN-QLTSIPA-TLPDTIQEMELSINR-ITELPERLP----SALQSLD 268 (754)
T ss_pred cCCcEEEecCCC-CCcCChhhc--cCCCEEECCCC-ccccCCh-hhhccccEEECcCCc-cCcCChhHh----CCCCEEE
Confidence 466777777765 335554442 46777777766 4555553 234567777777766 445655431 3566666
Q ss_pred eecCCCCccccccCCCCCcceEEeccC
Q 035550 1052 IEDCHSLTYIAAVQLPPSLKQLEIYNC 1078 (1385)
Q Consensus 1052 l~~~~~l~~~~~~~~~~~L~~L~l~~~ 1078 (1385)
+++|. ++.++. ..+++|+.|++++|
T Consensus 269 Ls~N~-L~~LP~-~l~~sL~~L~Ls~N 293 (754)
T PRK15370 269 LFHNK-ISCLPE-NLPEELRYLSVYDN 293 (754)
T ss_pred CcCCc-cCcccc-ccCCCCcEEECCCC
Confidence 66554 223322 22345666666655
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.39 E-value=7.6e-13 Score=162.67 Aligned_cols=75 Identities=19% Similarity=0.269 Sum_probs=42.7
Q ss_pred ccccEEEeccCCCCCcCcccccCCCCccEEEeccCCCcccccCccCccccceEEeecCCCCCCCCcccccCCCCCcceEE
Q 035550 972 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEILN 1051 (1385)
Q Consensus 972 ~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 1051 (1385)
.+...|+++++. +..+|..+. ++|+.|++++| .++.+|.. ..++|+.|++++|. ++.+|..+ .++|+.|+
T Consensus 178 ~~~~~L~L~~~~-LtsLP~~Ip--~~L~~L~Ls~N-~LtsLP~~-l~~nL~~L~Ls~N~-LtsLP~~l----~~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILG-LTTIPACIP--EQITTLILDNN-ELKSLPEN-LQGNIKTLYANSNQ-LTSIPATL----PDTIQEME 247 (754)
T ss_pred cCceEEEeCCCC-cCcCCcccc--cCCcEEEecCC-CCCcCChh-hccCCCEEECCCCc-cccCChhh----hccccEEE
Confidence 456777777765 445665442 46777777776 45556542 23467777777665 45555432 12455555
Q ss_pred eecCC
Q 035550 1052 IEDCH 1056 (1385)
Q Consensus 1052 l~~~~ 1056 (1385)
+++|.
T Consensus 248 Ls~N~ 252 (754)
T PRK15370 248 LSINR 252 (754)
T ss_pred CcCCc
Confidence 55554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.36 E-value=3.2e-14 Score=131.98 Aligned_cols=84 Identities=29% Similarity=0.402 Sum_probs=60.9
Q ss_pred cccCCceeEEEEcCcccccccccccCCccccEEecccccccccchhhhccCCccEEecCCCcchhhhhhcccccCCCCee
Q 035550 526 LFKLQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHL 605 (1385)
Q Consensus 526 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 605 (1385)
+..+.++..|.|++|.++.+|..|..|.+|++|++++|+|+++|.+|+.|++|+.|+++-| .+..+|.+|+.++.|++|
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVL 107 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhh
Confidence 3455666667777777777777777777777777777777777777777777777777764 566777777777777777
Q ss_pred ecCCC
Q 035550 606 DNLDT 610 (1385)
Q Consensus 606 ~l~~~ 610 (1385)
|+..|
T Consensus 108 dltyn 112 (264)
T KOG0617|consen 108 DLTYN 112 (264)
T ss_pred hcccc
Confidence 77766
No 22
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.34 E-value=4.5e-11 Score=158.89 Aligned_cols=293 Identities=15% Similarity=0.202 Sum_probs=180.4
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCC-CCCHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD-DFDVIRLTKSI 195 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i 195 (1385)
..+|-|+.-.+.+- .. ...+++.|+|++|.||||++.++.+. +..++|+++.. +.++..+...+
T Consensus 14 ~~~~~R~rl~~~l~----~~-----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 14 HNTVVRERLLAKLS----GA-----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred cccCcchHHHHHHh----cc-----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHH
Confidence 34566765554442 21 24689999999999999999998852 22689999964 44666676777
Q ss_pred HHHhcCCCCC------------CccCHHHHHHHHHhHcC--CCeEEEEEecCCCCCccccc-cccCcccCCCCCcEEEEE
Q 035550 196 LLSIASDQIV------------DNHDLNKLQEELKKKLS--PKKFLLVLDDVWNENYNDWD-RLRPPFEAGAPGSKIIVT 260 (1385)
Q Consensus 196 ~~~~~~~~~~------------~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~-~l~~~l~~~~~gs~ilvT 260 (1385)
+..+...... ...+...+...+...+. +.+++|||||++..+..... .+...+.....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 7766421110 00122233333333332 68999999999654323333 333333333456788899
Q ss_pred ccchhHh---hhhCCCCcccCC----CCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHHhhhhcC
Q 035550 261 ARNQGVA---AIMGTAPAYQLK----KLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRG 333 (1385)
Q Consensus 261 tR~~~v~---~~~~~~~~~~l~----~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~ 333 (1385)
||...-. .........++. +|+.+|+.++|....... .. .+...+|++.|+|.|+++..++..+..
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~---~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP---IE----AAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC---CC----HHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 9984211 111112345555 999999999997654221 11 245567999999999999999887754
Q ss_pred CCCHHHHHHHHhhhhhhhcc-ccccchHHHHH-hhhcCChhhhhhhhhhcccCCCcccChHHHHHHHHHcCCCccCCCCC
Q 035550 334 KDDRREWEDVLSSKIWELQE-ERCDIIPALRV-SYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLGHKESGN 411 (1385)
Q Consensus 334 ~~~~~~w~~~l~~~~~~~~~-~~~~i~~~l~~-sy~~L~~~~k~cf~~~~~fp~~~~~~~~~li~~w~a~g~~~~~~~~~ 411 (1385)
...... .. .+.+.. ....+...+.- .|+.||++.++.+...|+++ .++.+ +.. .+.+.
T Consensus 232 ~~~~~~--~~----~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~-l~~-----~l~~~----- 291 (903)
T PRK04841 232 NNSSLH--DS----ARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDA-LIV-----RVTGE----- 291 (903)
T ss_pred CCCchh--hh----hHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHH-HHH-----HHcCC-----
Confidence 422100 00 111111 11234444433 48899999999999999986 33432 222 11111
Q ss_pred cHHHHHHHHHHHHHHcCCccc-cCCCCCeEEEchhHHHHHHhhc
Q 035550 412 PIEDLGRKFFQELRSRSFFQQ-SSNNESRFVMHDLVNDLAQWAA 454 (1385)
Q Consensus 412 ~~~~~~~~~~~~L~~~sll~~-~~~~~~~~~mhdlv~~~~~~~~ 454 (1385)
+.+.+.+++|.+++++.. .+.+...|+.|++++++.+...
T Consensus 292 ---~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 ---ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ---CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 114677999999999764 3334458999999999998764
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.34 E-value=2.8e-14 Score=132.33 Aligned_cols=169 Identities=22% Similarity=0.284 Sum_probs=118.1
Q ss_pred cccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeec
Q 035550 1138 SSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTI 1217 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L 1217 (1385)
+.++.|.+++|.++ .+|..+..+.+|+.|++++|+ +..+|..+..+++|+.|+++-|. +..+|.+|+.+|.|+.||+
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhc
Confidence 45677777777443 445556677788888888777 67777777778888888887776 6677778888888888888
Q ss_pred cccCCC-CCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCCCCccc
Q 035550 1218 GIGGAL-PSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLPASL 1296 (1385)
Q Consensus 1218 ~~n~~~-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~L 1296 (1385)
.+|++. ..+|..|..+..|+.|+|++|.+. ..|..+.++++|+.|.+..|
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe-----~lp~dvg~lt~lqil~lrdn------------------------ 160 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-----ILPPDVGKLTNLQILSLRDN------------------------ 160 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcc-----cCChhhhhhcceeEEeeccC------------------------
Confidence 877755 456777777777777777777532 23345566666666666653
Q ss_pred ceeecccccccccccccCCCCCCCCeEeccCCCCCCCCCCCCCCCccceeeecCChh
Q 035550 1297 TSLWIFNFPNLERLSSSIVDLQNLTELKLHNCPKLKYFPEKGLPSSLLQLQIVGCPL 1353 (1385)
Q Consensus 1297 ~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~~ 1353 (1385)
.+-++|..++.+++|+.|.|.++ .++.+|. -|-.|++.+...
T Consensus 161 ---------dll~lpkeig~lt~lrelhiqgn-rl~vlpp-----el~~l~l~~~k~ 202 (264)
T KOG0617|consen 161 ---------DLLSLPKEIGDLTRLRELHIQGN-RLTVLPP-----ELANLDLVGNKQ 202 (264)
T ss_pred ---------chhhCcHHHHHHHHHHHHhcccc-eeeecCh-----hhhhhhhhhhHH
Confidence 56678888888999999999885 5777654 455555555443
No 24
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.26 E-value=4.2e-10 Score=133.30 Aligned_cols=302 Identities=13% Similarity=0.074 Sum_probs=178.1
Q ss_pred cCCeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHH
Q 035550 115 NEAKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKS 194 (1385)
Q Consensus 115 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 194 (1385)
.+..++||++++++|...+...-. +.....+.|+|++|+|||++++.++++.......-.++++++....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 356799999999999999854321 123345789999999999999999985332222234667777777788899999
Q ss_pred HHHHhcCCC-CCCccCHHHHHHHHHhHcC--CCeEEEEEecCCCCC----ccccccccCcccCCCCCcE--EEEEccchh
Q 035550 195 ILLSIASDQ-IVDNHDLNKLQEELKKKLS--PKKFLLVLDDVWNEN----YNDWDRLRPPFEAGAPGSK--IIVTARNQG 265 (1385)
Q Consensus 195 i~~~~~~~~-~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~----~~~~~~l~~~l~~~~~gs~--ilvTtR~~~ 265 (1385)
++.++.... .....+.+++.+.+.+.++ +++.+||||+++.-. .+.+..+...+.. ..+++ ||.++....
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcc
Confidence 999987632 2223356667777777764 567899999995421 1122222222211 12333 566666544
Q ss_pred HhhhhC-------CCCcccCCCCChhhhHHHhhhhccCc--CCCCCchhHHHHHHHHHHhcCCCchHHHHHhhhh--c--
Q 035550 266 VAAIMG-------TAPAYQLKKLSNDDCLSVFAQHSLGT--RDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLL--R-- 332 (1385)
Q Consensus 266 v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~a~~~--~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l--~-- 332 (1385)
+..... ....+.+++++.++..+++..++... .....++.++.+++......|..+.|+.++-.+. .
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 333221 12467899999999999998775321 1112333344444444444566778877764332 1
Q ss_pred -CCC--CHHHHHHHHhhhhhhhccccccchHHHHHhhhcCChhhhhhhhhhcccCC--CcccChHHHHHH--HHHcCCCc
Q 035550 333 -GKD--DRREWEDVLSSKIWELQEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPK--DYEFEEEEIILL--WCASGFLG 405 (1385)
Q Consensus 333 -~~~--~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~--~~~~~~~~li~~--w~a~g~~~ 405 (1385)
+.. +.++...+.+.. -.....-.+..||.+.|..+..++-.-+ ...+...++... .+++.+-.
T Consensus 265 ~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred cCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 111 244555444432 1123445688999988877765553321 123455555432 33322111
Q ss_pred cCCCCCcHHHHHHHHHHHHHHcCCcccc
Q 035550 406 HKESGNPIEDLGRKFFQELRSRSFFQQS 433 (1385)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~L~~~sll~~~ 433 (1385)
. ........+|+.+|...++++..
T Consensus 335 ~----~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 335 E----PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred C----cCcHHHHHHHHHHHHhcCCeEEE
Confidence 1 11223456789999999999853
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.20 E-value=1.2e-11 Score=154.75 Aligned_cols=102 Identities=32% Similarity=0.387 Sum_probs=79.8
Q ss_pred CCceeEEEEcCcc--cccccc-cccCCccccEEecccc-cccccchhhhccCCccEEecCCCcchhhhhhcccccCCCCe
Q 035550 529 LQRLRVFSLRGYY--ISELPD-SFGDLRYLRYLNLSLT-EIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHH 604 (1385)
Q Consensus 529 l~~Lr~L~L~~~~--i~~lp~-~i~~L~~L~~L~L~~~-~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 604 (1385)
.+.|++|-+.+|. +..++. .|..+++|++|||++| .+..+|++|+.|.+||+|++++ +.+..+|.++++|++|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhhe
Confidence 3468888888885 666654 4777889999999876 4568899899999999999988 478888988999999999
Q ss_pred eecCCCCCcccccCCCCcccccccccc
Q 035550 605 LDNLDTGSLEEMPLGIGKLTCLQTLCN 631 (1385)
Q Consensus 605 L~l~~~~~~~~lp~~i~~L~~L~~L~~ 631 (1385)
|++..+..+..+|..+..|.+||+|..
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRL 649 (889)
T ss_pred eccccccccccccchhhhcccccEEEe
Confidence 988888666666555666888888843
No 26
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.16 E-value=4.3e-09 Score=123.33 Aligned_cols=302 Identities=11% Similarity=0.070 Sum_probs=172.1
Q ss_pred CCeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccc-ccC---CcEEEEEeCCCCCHHHH
Q 035550 116 EAKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQ-DHF---DLKAWTCVSDDFDVIRL 191 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~-~~f---~~~~wv~~~~~~~~~~~ 191 (1385)
+..++||++++++|..++..... +.....+.|+|++|+|||++|+.+++..... ... -..+|+.+....+...+
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 34689999999999999864211 1234568999999999999999999742111 111 24577888777778889
Q ss_pred HHHHHHHhc---CCCCCCccCHHHHHHHHHhHc--CCCeEEEEEecCCCCC---ccccccccCcc-cCCC--CCcEEEEE
Q 035550 192 TKSILLSIA---SDQIVDNHDLNKLQEELKKKL--SPKKFLLVLDDVWNEN---YNDWDRLRPPF-EAGA--PGSKIIVT 260 (1385)
Q Consensus 192 ~~~i~~~~~---~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~---~~~~~~l~~~l-~~~~--~gs~ilvT 260 (1385)
+..++.++. ...+....+..++...+.+.+ .+++++||||+++.-. .+....+.... .... ....+|++
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 999999884 222212234455555566655 3668899999994431 01111222110 0111 22345555
Q ss_pred ccchhHhhhhC-------CCCcccCCCCChhhhHHHhhhhccCc-CCCCCchhHHHHHHHHHHhcCCCch-HHHHHhhhh
Q 035550 261 ARNQGVAAIMG-------TAPAYQLKKLSNDDCLSVFAQHSLGT-RDFSSNKSLEEIGKKIVIKCNGLPL-AAKTLGGLL 331 (1385)
Q Consensus 261 tR~~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~a~~~-~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~~l 331 (1385)
+........+. ....+++++.+.++..+++..++... ....-.++..+...+++....|.|- |+.++-.+.
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAG 251 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 55443322111 12468899999999999998876311 1111223333455557777788874 433332211
Q ss_pred ----c-CC--CCHHHHHHHHhhhhhhhccccccchHHHHHhhhcCChhhhhhhhhhcccC--CCcccChHHHHHHHH--H
Q 035550 332 ----R-GK--DDRREWEDVLSSKIWELQEERCDIIPALRVSYYYLSAPLKQCFAYCSLFP--KDYEFEEEEIILLWC--A 400 (1385)
Q Consensus 332 ----~-~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp--~~~~~~~~~li~~w~--a 400 (1385)
. +. -+.++...+.+.. -.....-+...||.+.|..+..++..- ++..+...++...+- +
T Consensus 252 ~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~ 321 (365)
T TIGR02928 252 EIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVC 321 (365)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 1 11 1233333333321 012334567789988887666554221 334456666665331 2
Q ss_pred cCCCccCCCCCcHHHHHHHHHHHHHHcCCcccc
Q 035550 401 SGFLGHKESGNPIEDLGRKFFQELRSRSFFQQS 433 (1385)
Q Consensus 401 ~g~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~ 433 (1385)
+. +.. ....+....+++..|...|++...
T Consensus 322 ~~-~~~---~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 322 ED-IGV---DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred Hh-cCC---CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 21 111 123346678889999999999864
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.11 E-value=7.4e-12 Score=144.51 Aligned_cols=86 Identities=23% Similarity=0.280 Sum_probs=46.0
Q ss_pred cccceeEEcccCcch----hhhhhcCCCCCCcEEeecCCCCcc----ccCCCCCCccCcceEEeccccCccc----cccc
Q 035550 1138 SSLKSLVVWSCSKLE----SIAERLDNNTSLETISIDSCGNLV----SFPEGGLPCVKLRMLAITNCKRLEA----LPKG 1205 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~----~~~~~l~~l~~L~~L~L~~n~~l~----~~~~~~~~l~~L~~L~L~~n~~~~~----lp~~ 1205 (1385)
++|++|++++|.+.+ .++..+..+++|++|++++|.+.+ .++..+..+++|++|++++|.+.+. ++..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 466666666666552 234445556667777777666442 1222233345666666666654322 2233
Q ss_pred CCCCCccceeeccccCCC
Q 035550 1206 LHNLTSLQELTIGIGGAL 1223 (1385)
Q Consensus 1206 l~~l~~L~~L~L~~n~~~ 1223 (1385)
+..+++|++|++++|++.
T Consensus 217 ~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 217 LASLKSLEVLNLGDNNLT 234 (319)
T ss_pred hcccCCCCEEecCCCcCc
Confidence 445566666666666543
No 28
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.07 E-value=7.3e-09 Score=115.66 Aligned_cols=182 Identities=19% Similarity=0.169 Sum_probs=113.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHH----h
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELK----K 219 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~----~ 219 (1385)
..++.|+|++|+||||+|+.+++.... ... .++|+ +....+..+++..++..++.... ..+.......+. .
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE--GRDKAALLRELEDFLIE 117 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHHHH
Confidence 357899999999999999999985331 111 12233 33445777888899888866432 222222333333 3
Q ss_pred H-cCCCeEEEEEecCCCCCccccccccCccc---CCCCCcEEEEEccchhHhhhhC----------CCCcccCCCCChhh
Q 035550 220 K-LSPKKFLLVLDDVWNENYNDWDRLRPPFE---AGAPGSKIIVTARNQGVAAIMG----------TAPAYQLKKLSNDD 285 (1385)
Q Consensus 220 ~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~---~~~~gs~ilvTtR~~~v~~~~~----------~~~~~~l~~L~~~~ 285 (1385)
. ..+++.++|+||+|.-....++.+..... .......|++|.... ....+. ....+++++++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2 26788999999998766555665543221 112233445555432 221111 12457899999999
Q ss_pred hHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHHhhhh
Q 035550 286 CLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLL 331 (1385)
Q Consensus 286 ~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 331 (1385)
..+++...+..........--.+..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999887653222111111123677889999999999999888776
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.06 E-value=3.6e-11 Score=138.76 Aligned_cols=186 Identities=19% Similarity=0.142 Sum_probs=87.9
Q ss_pred cccceeEEcccCcchhhhhhcCCCC---CCcEEeecCCCCcc----ccCCCCCCc-cCcceEEeccccCcc----ccccc
Q 035550 1138 SSLKSLVVWSCSKLESIAERLDNNT---SLETISIDSCGNLV----SFPEGGLPC-VKLRMLAITNCKRLE----ALPKG 1205 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~~~l~~l~---~L~~L~L~~n~~l~----~~~~~~~~l-~~L~~L~L~~n~~~~----~lp~~ 1205 (1385)
++|+.|++++|...+..+..+..+. +|++|++++|.... .+...+..+ ++|++|++++|.+.+ .++..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 3555555555555443333332222 36666666665331 111222333 566666666665442 22333
Q ss_pred CCCCCccceeeccccCCCCC----CcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchh
Q 035550 1206 LHNLTSLQELTIGIGGALPS----LEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFAL 1281 (1385)
Q Consensus 1206 l~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 1281 (1385)
+..+++|++|++++|.+.+. ++..+...++|++|++++|.+...........+..+++|++|++++|...-.. .
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~--~ 238 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG--A 238 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH--H
Confidence 44555666666666654421 22223334566666666665433322222334556666777777765311100 0
Q ss_pred hhhhcc-CcCCCCcccceeecccccccc-----cccccCCCCCCCCeEeccCC
Q 035550 1282 EDKRLG-TALPLPASLTSLWIFNFPNLE-----RLSSSIVDLQNLTELKLHNC 1328 (1385)
Q Consensus 1282 ~~~~l~-~~~~~~~~L~~L~l~~~~~l~-----~l~~~~~~l~~L~~L~l~~c 1328 (1385)
..+. ......++|++|++.+| .++ .+...+..+++|+++++++|
T Consensus 239 --~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 239 --AALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred --HHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 0000 00012345666666665 232 23334455566777777665
No 30
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.98 E-value=2.8e-08 Score=117.37 Aligned_cols=279 Identities=17% Similarity=0.210 Sum_probs=181.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCC-CCHHHHHHHHHHHhcCCCCC------------Ccc
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD-FDVIRLTKSILLSIASDQIV------------DNH 208 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~~------------~~~ 208 (1385)
.+.+++.|..++|.|||||+.+... ....-..+.|.++.+. .++..+.+-++..+....+. ...
T Consensus 35 ~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~ 111 (894)
T COG2909 35 NDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYV 111 (894)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccc
Confidence 4689999999999999999999975 1223346899998775 46788888888887743321 122
Q ss_pred CHHHHHHHHHhHcC--CCeEEEEEecCCCCCcccccc-ccCcccCCCCCcEEEEEccchhHhhhh---CCCCcccCC---
Q 035550 209 DLNKLQEELKKKLS--PKKFLLVLDDVWNENYNDWDR-LRPPFEAGAPGSKIIVTARNQGVAAIM---GTAPAYQLK--- 279 (1385)
Q Consensus 209 ~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~-l~~~l~~~~~gs~ilvTtR~~~v~~~~---~~~~~~~l~--- 279 (1385)
+...+.+.+...+. .++..+||||.+-........ +.-.+.....+-.+|||||...-.... -.....+++
T Consensus 112 ~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~ 191 (894)
T COG2909 112 SLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEE 191 (894)
T ss_pred cHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHh
Confidence 33444555555443 568999999985443223332 333334455688999999986432211 112234443
Q ss_pred -CCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHHhhhhcCCCCHHHHHHHHh---hhhhhhcccc
Q 035550 280 -KLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKDDRREWEDVLS---SKIWELQEER 355 (1385)
Q Consensus 280 -~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~---~~~~~~~~~~ 355 (1385)
.++.+|+.++|....... --+.-...+.++.+|-+-|+..++=.+++..+.+.-...+. +..+++-
T Consensus 192 Lrf~~eE~~~fl~~~~~l~-------Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~dYL--- 261 (894)
T COG2909 192 LRFDTEEAAAFLNDRGSLP-------LDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHLSDYL--- 261 (894)
T ss_pred hcCChHHHHHHHHHcCCCC-------CChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHHHHH---
Confidence 478999999998764211 11244667999999999999999988884434333222222 1111111
Q ss_pred ccchHHHHHhhhcCChhhhhhhhhhcccCCCcccChHHHHHHHHHcCCCccCCCCCcHHHHHHHHHHHHHHcCCccc-cC
Q 035550 356 CDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLGHKESGNPIEDLGRKFFQELRSRSFFQQ-SS 434 (1385)
Q Consensus 356 ~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~~~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~L~~~sll~~-~~ 434 (1385)
..--++.||+++|.-++-||+++.- -+.++..-. -++.|..++++|.+++++-. -+
T Consensus 262 ------~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~Lt-------------g~~ng~amLe~L~~~gLFl~~Ld 318 (894)
T COG2909 262 ------VEEVLDRLPPELRDFLLQTSVLSRF----NDELCNALT-------------GEENGQAMLEELERRGLFLQRLD 318 (894)
T ss_pred ------HHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHHh-------------cCCcHHHHHHHHHhCCCceeeec
Confidence 1224689999999999999998641 233443321 12337788999999999864 45
Q ss_pred CCCCeEEEchhHHHHHHhhccc
Q 035550 435 NNESRFVMHDLVNDLAQWAAGE 456 (1385)
Q Consensus 435 ~~~~~~~mhdlv~~~~~~~~~~ 456 (1385)
+....|+.|.+..||.+.....
T Consensus 319 d~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 319 DEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred CCCceeehhHHHHHHHHhhhcc
Confidence 5678999999999998765443
No 31
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.97 E-value=2.8e-09 Score=121.50 Aligned_cols=278 Identities=15% Similarity=0.146 Sum_probs=149.7
Q ss_pred CCeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHH
Q 035550 116 EAKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSI 195 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 195 (1385)
-.+|+|+++.++++..++..... .+.....+.|+|++|+||||+|+.+++.. ...+ .++... .......+..+
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l--~~~~---~~~~~~-~~~~~~~l~~~ 96 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEM--GVNI---RITSGP-ALEKPGDLAAI 96 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHh--CCCe---EEEecc-cccChHHHHHH
Confidence 35699999999999888754221 12345678899999999999999999842 2211 112211 11222223333
Q ss_pred HHHhcCCCCCCccCH----HHHHHHHHhHcCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchhHhhhhC
Q 035550 196 LLSIASDQIVDNHDL----NKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQGVAAIMG 271 (1385)
Q Consensus 196 ~~~~~~~~~~~~~~~----~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~ 271 (1385)
+..+......-.++. ....+.+...+.+.+..+|+|+..+.. . +...++ +.+-|..|+|...+...+.
T Consensus 97 l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~--~---~~~~l~---~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR--S---IRLDLP---PFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc--c---eeecCC---CceEEeecCCcccCCHHHH
Confidence 333322111001111 112334455555666666776653221 1 111122 2345667777554433221
Q ss_pred --CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHHhhhhcCCCCHHHHHHHHhhhhh
Q 035550 272 --TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKDDRREWEDVLSSKIW 349 (1385)
Q Consensus 272 --~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~ 349 (1385)
-...+++++++.++..+++.+.+.......+ .+....|++.|+|.|-.+..+...+ ..|...... .
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~----~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~--~ 236 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILGVEID----EEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGD--G 236 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCC--C
Confidence 1246899999999999999988754332211 2567789999999995444443322 122211100 0
Q ss_pred hhc-cccccchHHHHHhhhcCChhhhhhhh-hhcccCCCcccChHHHHHHHHHcCCCccCCCCCcHHHHHHHHHH-HHHH
Q 035550 350 ELQ-EERCDIIPALRVSYYYLSAPLKQCFA-YCSLFPKDYEFEEEEIILLWCASGFLGHKESGNPIEDLGRKFFQ-ELRS 426 (1385)
Q Consensus 350 ~~~-~~~~~i~~~l~~sy~~L~~~~k~cf~-~~~~fp~~~~~~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~-~L~~ 426 (1385)
... .........+...|..|++..+..+. ....|+.+ .+..+.+.... +. .. +.+++.++ .|++
T Consensus 237 ~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g~--~~----~~~~~~~e~~Li~ 303 (328)
T PRK00080 237 VITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------GE--ER----DTIEDVYEPYLIQ 303 (328)
T ss_pred CCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------CC--Cc----chHHHHhhHHHHH
Confidence 000 00012233455667788888777775 66677655 45555543322 11 11 22444455 7899
Q ss_pred cCCcccc
Q 035550 427 RSFFQQS 433 (1385)
Q Consensus 427 ~sll~~~ 433 (1385)
.+|++..
T Consensus 304 ~~li~~~ 310 (328)
T PRK00080 304 QGFIQRT 310 (328)
T ss_pred cCCcccC
Confidence 9999754
No 32
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.95 E-value=1.1e-09 Score=120.15 Aligned_cols=194 Identities=22% Similarity=0.233 Sum_probs=97.2
Q ss_pred eeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHH---
Q 035550 119 VYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSI--- 195 (1385)
Q Consensus 119 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i--- 195 (1385)
|+||++|+++|.+++... ..+.+.|+|+.|+|||+|++++.+.. +..-..++|+...+.... .....+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~--~~~~~~~~y~~~~~~~~~-~~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINEL--KEKGYKVVYIDFLEESNE-SSLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHC--T--EECCCHHCCTTBSHH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHh--hhcCCcEEEEecccchhh-hHHHHHHHH
Confidence 789999999999998654 24689999999999999999999832 221113444444343322 112222
Q ss_pred -----------HHHhcCCCC---------CCccCHHHHHHHHHhHcCCCeEEEEEecCCCCC------ccccccccCccc
Q 035550 196 -----------LLSIASDQI---------VDNHDLNKLQEELKKKLSPKKFLLVLDDVWNEN------YNDWDRLRPPFE 249 (1385)
Q Consensus 196 -----------~~~~~~~~~---------~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~~~~~~l~~~l~ 249 (1385)
...+..... ........+.+.+.+ .+++++||+||+..-. ..-...+...+.
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~ 149 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKK--KGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLD 149 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHH--CHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHh--cCCcEEEEEecHHHHhhcccchHHHHHHHHHHHh
Confidence 111111100 011122223333332 2455999999993322 000111222222
Q ss_pred C--CCCCcEEEEEccchhHhhh--------hCCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCC
Q 035550 250 A--GAPGSKIIVTARNQGVAAI--------MGTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNG 319 (1385)
Q Consensus 250 ~--~~~gs~ilvTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g 319 (1385)
. ......++++.....+... .+....+.+++++.+++++++...+-.... - +.-++..++|+..+||
T Consensus 150 ~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~--~-~~~~~~~~~i~~~~gG 226 (234)
T PF01637_consen 150 SLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIK--L-PFSDEDIEEIYSLTGG 226 (234)
T ss_dssp H----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT
T ss_pred hccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhc--c-cCCHHHHHHHHHHhCC
Confidence 2 1223334444444433332 122345999999999999999886432211 1 1123455789999999
Q ss_pred CchHHHH
Q 035550 320 LPLAAKT 326 (1385)
Q Consensus 320 ~PLai~~ 326 (1385)
+|..|..
T Consensus 227 ~P~~l~~ 233 (234)
T PF01637_consen 227 NPRYLQE 233 (234)
T ss_dssp -HHHHHH
T ss_pred CHHHHhc
Confidence 9998864
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.94 E-value=3.9e-09 Score=119.95 Aligned_cols=277 Identities=14% Similarity=0.110 Sum_probs=149.6
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.+|||+++.++++..++..... .......+.++|++|+|||+||+.+++.. ...+ ..+......... .+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~---~~~~~~~~~~~~-~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEM--GVNL---KITSGPALEKPG-DLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCE---EEeccchhcCch-hHHHHH
Confidence 3689999999999998854321 12334567899999999999999999842 2222 112211111111 222223
Q ss_pred HHhcCCCCCCccCH----HHHHHHHHhHcCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchhHhhhhC-
Q 035550 197 LSIASDQIVDNHDL----NKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQGVAAIMG- 271 (1385)
Q Consensus 197 ~~~~~~~~~~~~~~----~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~- 271 (1385)
..+......-.++. ....+.+...+.+.+..+|+|+.... ..|. ..++ +.+-|..||+...+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~~---~~~~---~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA--RSVR---LDLP---PFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccc--ccee---ecCC---CeEEEEecCCccccCHHHHh
Confidence 33322210000111 12334456666666777777776332 2222 1222 2455667777654433221
Q ss_pred -CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHHhhhhcCCCCHHHHHHHHhhhhhh
Q 035550 272 -TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKDDRREWEDVLSSKIWE 350 (1385)
Q Consensus 272 -~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~ 350 (1385)
-...+++++++.++..+++.+.+.......+ .+....|++.|+|.|-.+..++..+ |..........
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~----~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEIE----PEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcC----HHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCC
Confidence 1346789999999999999988753322111 2456779999999997665444332 11110000000
Q ss_pred hc-cccccchHHHHHhhhcCChhhhhhhh-hhcccCCCcccChHHHHHHHHHcCCCccCCCCCcHHHHHHHHHH-HHHHc
Q 035550 351 LQ-EERCDIIPALRVSYYYLSAPLKQCFA-YCSLFPKDYEFEEEEIILLWCASGFLGHKESGNPIEDLGRKFFQ-ELRSR 427 (1385)
Q Consensus 351 ~~-~~~~~i~~~l~~sy~~L~~~~k~cf~-~~~~fp~~~~~~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~-~L~~~ 427 (1385)
.. +....+...+...|..++++.+..+. .++.+..+ .+..+.+.... | . ....++..++ .|+++
T Consensus 217 it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g---~------~~~~~~~~~e~~Li~~ 283 (305)
T TIGR00635 217 INRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G---E------DADTIEDVYEPYLLQI 283 (305)
T ss_pred cCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C---C------CcchHHHhhhHHHHHc
Confidence 00 00011222245567888888877666 55666543 34444333322 1 1 1123566677 69999
Q ss_pred CCcccc
Q 035550 428 SFFQQS 433 (1385)
Q Consensus 428 sll~~~ 433 (1385)
+|++..
T Consensus 284 ~li~~~ 289 (305)
T TIGR00635 284 GFLQRT 289 (305)
T ss_pred CCcccC
Confidence 999743
No 34
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.88 E-value=1.1e-07 Score=112.86 Aligned_cols=302 Identities=14% Similarity=0.118 Sum_probs=166.7
Q ss_pred CCeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccc---cccC--CcEEEEEeCCCCCHHH
Q 035550 116 EAKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQV---QDHF--DLKAWTCVSDDFDVIR 190 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~---~~~f--~~~~wv~~~~~~~~~~ 190 (1385)
+..+.|||+|+++|...|...-. +.....++.|+|++|.|||+.++.|.+.... +... -.+++|.+..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 45688999999999998865322 2223467889999999999999999864211 1111 2367788877778888
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHHHhHcC---CCeEEEEEecCCCCCccccccccCcccC-CCCCcEEEE--Eccch
Q 035550 191 LTKSILLSIASDQIVDNHDLNKLQEELKKKLS---PKKFLLVLDDVWNENYNDWDRLRPPFEA-GAPGSKIIV--TARNQ 264 (1385)
Q Consensus 191 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilv--TtR~~ 264 (1385)
++..|..++....+.......+..+.+...+. +...+||||+|..-....-+.+...+.+ ...+++|+| ++.+.
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 99999988865544333333444555555442 2345899999932211111122222222 123555544 33322
Q ss_pred h--------HhhhhCCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHHhhhhcCCCC
Q 035550 265 G--------VAAIMGTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKDD 336 (1385)
Q Consensus 265 ~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~ 336 (1385)
+ +...++ ...+...|.+.++-.+++..++........+..++-+|+.++...|-.-.||.++-.+...+..
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikeg 991 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRG 991 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCC
Confidence 2 222221 2346779999999999999987543223344455556665555555567777766555533211
Q ss_pred ----HHHHHHHHhhhhhhhccccccchHHHHHhhhcCChhhhhhhhhhcccCC---CcccChHHHHHHH--HHc--C-CC
Q 035550 337 ----RREWEDVLSSKIWELQEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPK---DYEFEEEEIILLW--CAS--G-FL 404 (1385)
Q Consensus 337 ----~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~---~~~~~~~~li~~w--~a~--g-~~ 404 (1385)
.++-..+.+.. ....+.-....||.+.|..+..+...-+ ...+...++.... +++ | .+
T Consensus 992 skVT~eHVrkAleei----------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~i 1061 (1164)
T PTZ00112 992 QKIVPRDITEATNQL----------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYI 1061 (1164)
T ss_pred CccCHHHHHHHHHHH----------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhc
Confidence 12222222110 0111333446788887765543332211 1234444444322 222 1 11
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHcCCcccc
Q 035550 405 GHKESGNPIEDLGRKFFQELRSRSFFQQS 433 (1385)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~L~~~sll~~~ 433 (1385)
+ .....+ ...+++.+|...|+|...
T Consensus 1062 G---v~plTq-RV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1062 G---MCSNNE-LFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred C---CCCcHH-HHHHHHHHHHhcCeEEec
Confidence 1 111222 567778888888887653
No 35
>PF05729 NACHT: NACHT domain
Probab=98.80 E-value=1.1e-08 Score=105.08 Aligned_cols=143 Identities=22% Similarity=0.256 Sum_probs=85.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccc----CCcEEEEEeCCCCCHH---HHHHHHHHHhcCCCCCCccCHHHHHHHH
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDH----FDLKAWTCVSDDFDVI---RLTKSILLSIASDQIVDNHDLNKLQEEL 217 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~l 217 (1385)
|++.|+|.+|+||||+++.++.+...... +..++|.......... .+...+..+..... .........+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~----~~~~~~~~~~ 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI----APIEELLQEL 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch----hhhHHHHHHH
Confidence 58999999999999999999875322222 4456677665543322 33333333332211 1111111111
Q ss_pred HhHcCCCeEEEEEecCCCCCc--c-----cccccc-CcccC-CCCCcEEEEEccchhH---hhhhCCCCcccCCCCChhh
Q 035550 218 KKKLSPKKFLLVLDDVWNENY--N-----DWDRLR-PPFEA-GAPGSKIIVTARNQGV---AAIMGTAPAYQLKKLSNDD 285 (1385)
Q Consensus 218 ~~~l~~~~~LlVlDdv~~~~~--~-----~~~~l~-~~l~~-~~~gs~ilvTtR~~~v---~~~~~~~~~~~l~~L~~~~ 285 (1385)
.-+.++++||+|++.+-.. . .+..+. ..+.. ..++.+++||+|.... .........+++.+|++++
T Consensus 77 --~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 77 --LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred --HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 1257899999999933211 0 011222 22222 2468999999998766 3333444689999999999
Q ss_pred hHHHhhhh
Q 035550 286 CLSVFAQH 293 (1385)
Q Consensus 286 ~~~lf~~~ 293 (1385)
..+++.++
T Consensus 155 ~~~~~~~~ 162 (166)
T PF05729_consen 155 IKQYLRKY 162 (166)
T ss_pred HHHHHHHH
Confidence 99999765
No 36
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.67 E-value=1.4e-09 Score=116.94 Aligned_cols=92 Identities=15% Similarity=0.296 Sum_probs=55.9
Q ss_pred CCccEEEEecccCccccccccchhhhccCccceEeecCCCCcccchhhhhhHHHHHhhhccccccEEEeccCCCCCcC--
Q 035550 911 PKLEELEIKNIKNETHIWKSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKL-- 988 (1385)
Q Consensus 911 ~~L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~l~~l-- 988 (1385)
.-|++|.+.++..... .....+....|+++.|.+.+|.+++.- ....+...++.|++|++..|..++..
T Consensus 138 g~lk~LSlrG~r~v~~--sslrt~~~~CpnIehL~l~gc~~iTd~-------s~~sla~~C~~l~~l~L~~c~~iT~~~L 208 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGD--SSLRTFASNCPNIEHLALYGCKKITDS-------SLLSLARYCRKLRHLNLHSCSSITDVSL 208 (483)
T ss_pred cccccccccccccCCc--chhhHHhhhCCchhhhhhhcceeccHH-------HHHHHHHhcchhhhhhhcccchhHHHHH
Confidence 3466677776665432 122234566778888888888766643 23344455677788888777765442
Q ss_pred cccccCCCCccEEEeccCCCccc
Q 035550 989 PQSSLSLSSLREIEIYKCSSLVS 1011 (1385)
Q Consensus 989 ~~~~~~l~~L~~L~L~~~~~l~~ 1011 (1385)
-....++++|++|+++.|+.+..
T Consensus 209 k~la~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 209 KYLAEGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred HHHHHhhhhHHHhhhccCchhhc
Confidence 12334677777777777765554
No 37
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.59 E-value=3.7e-07 Score=115.56 Aligned_cols=309 Identities=16% Similarity=0.176 Sum_probs=176.2
Q ss_pred eeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeC---CCC---CHHHHH
Q 035550 119 VYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVS---DDF---DVIRLT 192 (1385)
Q Consensus 119 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~---~~~---~~~~~~ 192 (1385)
++||+.+++.|...+.+.. .....++.+.|..|||||+++++|.+. +.+.+...+--.+. ... ...+.+
T Consensus 2 l~GRe~ev~~Ll~~f~~v~---~g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq~~ 76 (849)
T COG3899 2 LYGRETELAQLLAAFDRVS---KGRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQAF 76 (849)
T ss_pred CCchHhHHHHHHHHHHHHh---CCCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHHHH
Confidence 6899999999999997653 345569999999999999999999873 32222211111111 111 123344
Q ss_pred HHHHHHhcCCCC-------------------C------------C---------ccCHHH-----HHHHHHhHc-CCCeE
Q 035550 193 KSILLSIASDQI-------------------V------------D---------NHDLNK-----LQEELKKKL-SPKKF 226 (1385)
Q Consensus 193 ~~i~~~~~~~~~-------------------~------------~---------~~~~~~-----~~~~l~~~l-~~~~~ 226 (1385)
+++..++..... . . ....+. .+..+.... +.|+.
T Consensus 77 r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~pl 156 (849)
T COG3899 77 RDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPL 156 (849)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCe
Confidence 444444422110 0 0 000111 122233333 35699
Q ss_pred EEEEecCCCCCccccccccCcccCCC----CCcEEEEE--ccch--hHhhhhCCCCcccCCCCChhhhHHHhhhhccCcC
Q 035550 227 LLVLDDVWNENYNDWDRLRPPFEAGA----PGSKIIVT--ARNQ--GVAAIMGTAPAYQLKKLSNDDCLSVFAQHSLGTR 298 (1385)
Q Consensus 227 LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~ilvT--tR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~ 298 (1385)
++|+||+.+.+....+-+........ .-..|..+ .+.. .+.........+.|.||+..+.-.+.........
T Consensus 157 Vi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~ 236 (849)
T COG3899 157 VIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK 236 (849)
T ss_pred EEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc
Confidence 99999996655444333322221111 01123332 2222 1122222346899999999999999877653211
Q ss_pred CCCCchhHHHHHHHHHHhcCCCchHHHHHhhhhcCC------CCHHHHHHHHhhhhhhhccccccchHHHHHhhhcCChh
Q 035550 299 DFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGK------DDRREWEDVLSSKIWELQEERCDIIPALRVSYYYLSAP 372 (1385)
Q Consensus 299 ~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~------~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~ 372 (1385)
....+....|+++..|+|+.+..+-..+... .+...|..-... ...... .+++...+..-.+.||..
T Consensus 237 -----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~~~-~~~vv~~l~~rl~kL~~~ 309 (849)
T COG3899 237 -----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGILAT-TDAVVEFLAARLQKLPGT 309 (849)
T ss_pred -----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCchh-hHHHHHHHHHHHhcCCHH
Confidence 2234567779999999999999988888764 223344332211 111111 123555688899999999
Q ss_pred hhhhhhhhcccCCCcccChHHHHHHHHHcCCCccCCCCCcHHHHHHHHHHHHHHcCCccccC-----CCCCeE---EEch
Q 035550 373 LKQCFAYCSLFPKDYEFEEEEIILLWCASGFLGHKESGNPIEDLGRKFFQELRSRSFFQQSS-----NNESRF---VMHD 444 (1385)
Q Consensus 373 ~k~cf~~~~~fp~~~~~~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~-----~~~~~~---~mhd 444 (1385)
.|+..-..|++.. .|+.+.+...|- +....++...++.|....++-..+ ...... ..||
T Consensus 310 t~~Vl~~AA~iG~--~F~l~~La~l~~-----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~ 376 (849)
T COG3899 310 TREVLKAAACIGN--RFDLDTLAALAE-----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHD 376 (849)
T ss_pred HHHHHHHHHHhCc--cCCHHHHHHHHh-----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHH
Confidence 9999999999964 455665555542 123455666666665555553211 111111 4688
Q ss_pred hHHHHHHh
Q 035550 445 LVNDLAQW 452 (1385)
Q Consensus 445 lv~~~~~~ 452 (1385)
.+++.|-.
T Consensus 377 ~vqqaaY~ 384 (849)
T COG3899 377 RVQQAAYN 384 (849)
T ss_pred HHHHHHhc
Confidence 88887743
No 38
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.58 E-value=2.1e-09 Score=115.54 Aligned_cols=86 Identities=17% Similarity=0.267 Sum_probs=42.2
Q ss_pred CccEEEeccCCCcccccC---ccCccccceEEeecCCCCCCCCcccccCCCCCcceEEeecCCCCccccc---cCCCCCc
Q 035550 997 SLREIEIYKCSSLVSFPE---VALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEILNIEDCHSLTYIAA---VQLPPSL 1070 (1385)
Q Consensus 997 ~L~~L~L~~~~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~L 1070 (1385)
.|+.|.+.+|.....-+- ...+++++.|.+.+|..++...-.-....++.|++|++..|..++.... ...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 466777777754443221 2345666666666666444432211122344555666665555544321 1234455
Q ss_pred ceEEeccCCCCc
Q 035550 1071 KQLEIYNCDNIR 1082 (1385)
Q Consensus 1071 ~~L~l~~~~~L~ 1082 (1385)
+.++++.|+.++
T Consensus 219 ~~lNlSwc~qi~ 230 (483)
T KOG4341|consen 219 KYLNLSWCPQIS 230 (483)
T ss_pred HHhhhccCchhh
Confidence 555555554443
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.57 E-value=4e-08 Score=116.63 Aligned_cols=103 Identities=31% Similarity=0.445 Sum_probs=91.6
Q ss_pred ccccCCceeEEEEcCcccccccccccCCc-cccEEecccccccccchhhhccCCccEEecCCCcchhhhhhcccccCCCC
Q 035550 525 KLFKLQRLRVFSLRGYYISELPDSFGDLR-YLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLH 603 (1385)
Q Consensus 525 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~-~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 603 (1385)
.+..+..+..|++.++.++.+|...+.+. +|++|++++|++..+|..++.+++|+.|++++| .+..+|...+.+++|+
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhh
Confidence 34566889999999999999999888885 999999999999999999999999999999997 7889998888999999
Q ss_pred eeecCCCCCcccccCCCCcccccccc
Q 035550 604 HLDNLDTGSLEEMPLGIGKLTCLQTL 629 (1385)
Q Consensus 604 ~L~l~~~~~~~~lp~~i~~L~~L~~L 629 (1385)
.|++++| .+..+|..++.+..|++|
T Consensus 190 ~L~ls~N-~i~~l~~~~~~~~~L~~l 214 (394)
T COG4886 190 NLDLSGN-KISDLPPEIELLSALEEL 214 (394)
T ss_pred heeccCC-ccccCchhhhhhhhhhhh
Confidence 9999999 788998877666667766
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.53 E-value=5.3e-09 Score=116.62 Aligned_cols=105 Identities=27% Similarity=0.455 Sum_probs=76.6
Q ss_pred cccccccCCceeEEEEcCcccccccccccCCccccEEecccccccccchhhhccCCccEEecCCCcchhhhhhcccccCC
Q 035550 522 ILPKLFKLQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIK 601 (1385)
Q Consensus 522 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 601 (1385)
+|..++.+..|..|.|..|.|..+|..+++|..|.||||+.|++..+|..++.|+ |+.|-+++| ++..+|+.|+.+..
T Consensus 90 lp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~t 167 (722)
T KOG0532|consen 90 LPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPT 167 (722)
T ss_pred CchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchh
Confidence 4555566666777777777777777777777777777777777777777777764 777777764 67777777777777
Q ss_pred CCeeecCCCCCcccccCCCCcccccccc
Q 035550 602 LHHLDNLDTGSLEEMPLGIGKLTCLQTL 629 (1385)
Q Consensus 602 L~~L~l~~~~~~~~lp~~i~~L~~L~~L 629 (1385)
|.+||.+.| .+..+|..++.|++|+.|
T Consensus 168 l~~ld~s~n-ei~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 168 LAHLDVSKN-EIQSLPSQLGYLTSLRDL 194 (722)
T ss_pred HHHhhhhhh-hhhhchHHhhhHHHHHHH
Confidence 777777777 677777777777777666
No 41
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.3e-08 Score=110.10 Aligned_cols=184 Identities=17% Similarity=0.093 Sum_probs=120.0
Q ss_pred cccceeEEcccCcch--hhhhhcCCCCCCcEEeecCCCCccccCCC-CCCccCcceEEeccccCcc-cccccCCCCCccc
Q 035550 1138 SSLKSLVVWSCSKLE--SIAERLDNNTSLETISIDSCGNLVSFPEG-GLPCVKLRMLAITNCKRLE-ALPKGLHNLTSLQ 1213 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~L~~n~~l~~~~~~-~~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~ 1213 (1385)
+.++.|+|+.|-+.. .+......|++|+.|+|+.|.+....... -..+++|+.|.|++|.+.- .+-..+..+|+|+
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~ 225 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE 225 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence 689999999997665 34456678999999999999854332211 1246899999999998652 2223356789999
Q ss_pred eeeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCCCC
Q 035550 1214 ELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLP 1293 (1385)
Q Consensus 1214 ~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~ 1293 (1385)
.|+|.+|..+..-......+..|++|||++|++..... ......++.|+.|+++.|...-.-+.. -........+
T Consensus 226 ~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~---~~~~~~l~~L~~Lnls~tgi~si~~~d--~~s~~kt~~f 300 (505)
T KOG3207|consen 226 VLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ---GYKVGTLPGLNQLNLSSTGIASIAEPD--VESLDKTHTF 300 (505)
T ss_pred HhhhhcccccceecchhhhhhHHhhccccCCccccccc---ccccccccchhhhhccccCcchhcCCC--ccchhhhccc
Confidence 99999997555544455678999999999998553221 134678899999999997632221111 1111122345
Q ss_pred cccceeecccccccccccc--cCCCCCCCCeEeccC
Q 035550 1294 ASLTSLWIFNFPNLERLSS--SIVDLQNLTELKLHN 1327 (1385)
Q Consensus 1294 ~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~ 1327 (1385)
.+|+.|++..+ +++.+++ .+..+++|+.|.+..
T Consensus 301 ~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 301 PKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred ccceeeecccC-ccccccccchhhccchhhhhhccc
Confidence 66777777664 3443332 344455556655543
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.51 E-value=4e-08 Score=100.45 Aligned_cols=103 Identities=18% Similarity=0.114 Sum_probs=67.9
Q ss_pred CCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeeccccCCCCCCcccCCCCCCcceeE
Q 035550 1161 NTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIGGALPSLEEEDGLPTNLQSLN 1240 (1385)
Q Consensus 1161 l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ 1240 (1385)
...|++|||++|. ++.+.++..-.+.++.|++++|.+... ..+..+++|+.|||++|.+.... ..-..+-|++.|.
T Consensus 283 Wq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECV-GWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccc-hhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhh-hhHhhhcCEeeee
Confidence 3456677777766 455555555566777777777764443 23677888888888877644332 2223467888888
Q ss_pred ecCCcchhhhhhhcCccCCCCCccceEEecccC
Q 035550 1241 IWGNMEIWKSMIERGRGFHRFSSLRYLLISGCD 1273 (1385)
Q Consensus 1241 L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1273 (1385)
|++|.+... .++..+.+|..||+++|+
T Consensus 359 La~N~iE~L------SGL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 359 LAQNKIETL------SGLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred hhhhhHhhh------hhhHhhhhheeccccccc
Confidence 888864322 457788888888888863
No 43
>PRK06893 DNA replication initiation factor; Validated
Probab=98.50 E-value=2.8e-07 Score=98.70 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=92.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSP 223 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 223 (1385)
.+.+.++|++|+|||+||+++++. .......+.|+.+.... ... ..+.+.++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~---~~~----------------------~~~~~~~~- 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQ---YFS----------------------PAVLENLE- 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhh---hhh----------------------HHHHhhcc-
Confidence 357899999999999999999984 32233455666653110 000 01111222
Q ss_pred CeEEEEEecCCCCC-cccccc-ccCcccCC-CCCcEEEE-Eccc---------hhHhhhhCCCCcccCCCCChhhhHHHh
Q 035550 224 KKFLLVLDDVWNEN-YNDWDR-LRPPFEAG-APGSKIIV-TARN---------QGVAAIMGTAPAYQLKKLSNDDCLSVF 290 (1385)
Q Consensus 224 ~~~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~ilv-TtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf 290 (1385)
+.-+||+||+|... ...|+. +...+... ..|..+|| |++. +.+...+.....++++++++++.++++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVL 170 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHH
Confidence 23489999997642 234542 33323221 23555654 4543 355666666678999999999999999
Q ss_pred hhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHHh
Q 035550 291 AQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLG 328 (1385)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 328 (1385)
.+.++...-. .+ +++..-|++++.|..-++..+-
T Consensus 171 ~~~a~~~~l~-l~---~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 171 QRNAYQRGIE-LS---DEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHHcCCC-CC---HHHHHHHHHhccCCHHHHHHHH
Confidence 9888644321 11 3566678888887665555443
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.1e-08 Score=110.82 Aligned_cols=57 Identities=12% Similarity=0.171 Sum_probs=29.1
Q ss_pred ccccEEEeccCCCCCcCc--ccccCCCCccEEEeccCCCcccccC----ccCccccceEEeecCC
Q 035550 972 CRLEYLRLSNCEGLVKLP--QSSLSLSSLREIEIYKCSSLVSFPE----VALPSKLKKVKIRECD 1030 (1385)
Q Consensus 972 ~~L~~L~Ls~~~~l~~l~--~~~~~l~~L~~L~L~~~~~l~~~~~----~~~~~~L~~L~l~~~~ 1030 (1385)
.+|+.+.|.++.. ...+ .....|++++.|+|++| .+..+.. ...+|+|+.|+++.|.
T Consensus 121 kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nr 183 (505)
T KOG3207|consen 121 KKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNR 183 (505)
T ss_pred HhhhheeecCccc-cccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhccccccc
Confidence 4667777776653 2222 24456677777777766 2222111 2234555555555554
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.49 E-value=5.8e-07 Score=100.49 Aligned_cols=174 Identities=22% Similarity=0.341 Sum_probs=103.8
Q ss_pred cCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeeccccCCCCCCcccCCCCCCcc
Q 035550 1158 LDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIGGALPSLEEEDGLPTNLQ 1237 (1385)
Q Consensus 1158 l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~ 1237 (1385)
+..+.+++.|++++|. +..+|. +. .+|++|.+++|..+..+|..+ .++|+.|++++|..+..+| ++|+
T Consensus 48 ~~~~~~l~~L~Is~c~-L~sLP~-LP--~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCD-IESLPV-LP--NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCC-CcccCC-CC--CCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccc
Confidence 3445677777777774 666662 21 357777777777777776644 2577777777775554444 4567
Q ss_pred eeEecCCcchhhhhhhcCccCCCC-CccceEEecccCCccccchhhhhhccCcCCCCcccceeecccccccccccccCCC
Q 035550 1238 SLNIWGNMEIWKSMIERGRGFHRF-SSLRYLLISGCDDDMVSFALEDKRLGTALPLPASLTSLWIFNFPNLERLSSSIVD 1316 (1385)
Q Consensus 1238 ~L~L~~n~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 1316 (1385)
.|+++++... .+..+ ++|+.|.+.+++.... ..+ .-..|++|++|.+.+|..+. +|..+.
T Consensus 116 ~L~L~~n~~~---------~L~~LPssLk~L~I~~~n~~~~------~~l--p~~LPsSLk~L~Is~c~~i~-LP~~LP- 176 (426)
T PRK15386 116 SLEIKGSATD---------SIKNVPNGLTSLSINSYNPENQ------ARI--DNLISPSLKTLSLTGCSNII-LPEKLP- 176 (426)
T ss_pred eEEeCCCCCc---------ccccCcchHhheeccccccccc------ccc--ccccCCcccEEEecCCCccc-Cccccc-
Confidence 7777655421 11222 3566777654321000 000 01256789999998886553 444343
Q ss_pred CCCCCeEeccCCCCC-CCCCCCCCCCccceeeecCChhhHHhhhcCCCC
Q 035550 1317 LQNLTELKLHNCPKL-KYFPEKGLPSSLLQLQIVGCPLMKEKCRKDGGQ 1364 (1385)
Q Consensus 1317 l~~L~~L~l~~c~~l-~~l~~~~~~~sL~~L~i~~c~~l~~~~~~~~~~ 1364 (1385)
.+|+.|+++.+... ..++...+|+++ .|++.+|.++....-.+.|.
T Consensus 177 -~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~f~d~~i 223 (426)
T PRK15386 177 -ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDVFKDKNI 223 (426)
T ss_pred -ccCcEEEecccccccccCccccccccc-EechhhhcccCHHHhhcccc
Confidence 68999999875422 235556678888 99999997776544444443
No 46
>PLN03150 hypothetical protein; Provisional
Probab=98.48 E-value=1.2e-07 Score=117.14 Aligned_cols=109 Identities=17% Similarity=0.115 Sum_probs=99.1
Q ss_pred ccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeecc
Q 035550 1139 SLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIG 1218 (1385)
Q Consensus 1139 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~ 1218 (1385)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+.++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcccCCC-CCCcceeEecCCcch
Q 035550 1219 IGGALPSLEEEDGL-PTNLQSLNIWGNMEI 1247 (1385)
Q Consensus 1219 ~n~~~~~~~~~~~~-~~~L~~L~L~~n~~~ 1247 (1385)
+|.+.+.+|..++. +.++..+++.+|..+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 99999999987765 457788899988744
No 47
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.45 E-value=1.4e-07 Score=94.06 Aligned_cols=105 Identities=29% Similarity=0.319 Sum_probs=47.7
Q ss_pred cCCceeEEEEcCcccccccccccCCccccEEecccccccccchhh-hccCCccEEecCCCcchhhhh--hcccccCCCCe
Q 035550 528 KLQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLPESV-NKLYNLHTLLLEGCRRLKKLC--ADMGNLIKLHH 604 (1385)
Q Consensus 528 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i-~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~ 604 (1385)
.+.+|++|+|++|.|+.++ .+..+.+|++|++++|+|+.+++.+ ..+++|++|++++| .+..+- ..+..+++|++
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp T-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--E
T ss_pred hhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcce
Confidence 5678888888888888875 5777888888888888888887666 46888888888886 444332 34677888888
Q ss_pred eecCCCCCcccccCC----CCcccccccccceEec
Q 035550 605 LDNLDTGSLEEMPLG----IGKLTCLQTLCNFVVG 635 (1385)
Q Consensus 605 L~l~~~~~~~~lp~~----i~~L~~L~~L~~~~~~ 635 (1385)
|++.+|. +...+.- +..+++|+.|+...+.
T Consensus 118 L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 118 LSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp EE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred eeccCCc-ccchhhHHHHHHHHcChhheeCCEEcc
Confidence 8888883 4433321 5667777777554443
No 48
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.44 E-value=1.4e-06 Score=102.69 Aligned_cols=177 Identities=21% Similarity=0.264 Sum_probs=101.8
Q ss_pred CeeeechhHHHH---HHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHH
Q 035550 117 AKVYGRETEKKE---IVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTK 193 (1385)
Q Consensus 117 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 193 (1385)
.++||++..+.. +..++... ....+.++|++|+||||+|+.+++. .... |+.++.........+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHH
Confidence 357888777655 77766432 3456788999999999999999873 2222 222222111111111
Q ss_pred HHHHHhcCCCCCCccCHHHHHHHHHhH-cCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEE--Eccchh--Hhh
Q 035550 194 SILLSIASDQIVDNHDLNKLQEELKKK-LSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIV--TARNQG--VAA 268 (1385)
Q Consensus 194 ~i~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~--v~~ 268 (1385)
.+ .+..... ..+++.+|++|+++.-...+.+.+...+. .|..+++ ||.+.. +..
T Consensus 79 ~i------------------i~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 79 EV------------------IEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNP 137 (413)
T ss_pred HH------------------HHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccH
Confidence 22 2222111 14578899999997655445555554443 2444544 344432 111
Q ss_pred h-hCCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHHh
Q 035550 269 I-MGTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLG 328 (1385)
Q Consensus 269 ~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 328 (1385)
. ......+++.+++.++.+.++.+.+....... ..--.+....|++.|+|.+..+..+.
T Consensus 138 aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 138 ALLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 1 12236789999999999999987643211100 01113556778999999987665443
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.43 E-value=1.6e-08 Score=106.61 Aligned_cols=137 Identities=18% Similarity=0.175 Sum_probs=90.7
Q ss_pred CcccceeEEcccCcch----hhhhhcCCCCCCcEEeecCCCCccc----cCCCCCCccCcceEEeccccCccc----ccc
Q 035550 1137 PSSLKSLVVWSCSKLE----SIAERLDNNTSLETISIDSCGNLVS----FPEGGLPCVKLRMLAITNCKRLEA----LPK 1204 (1385)
Q Consensus 1137 ~~~L~~L~L~~~~~~~----~~~~~l~~l~~L~~L~L~~n~~l~~----~~~~~~~l~~L~~L~L~~n~~~~~----lp~ 1204 (1385)
|+.|+++....|+.-. .+...|+..+.|+.+.++.|.+-.. +...+..+++|++|||.+|.+... +..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 3577777777776443 3455677778888888888774321 233456778888888888876543 234
Q ss_pred cCCCCCccceeeccccCCCCCCcccC-----CCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccC
Q 035550 1205 GLHNLTSLQELTIGIGGALPSLEEED-----GLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCD 1273 (1385)
Q Consensus 1205 ~l~~l~~L~~L~L~~n~~~~~~~~~~-----~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1273 (1385)
.+..++.|+.|++++|.+...-...+ ...|+|++|.+.+|.+...........+...+.|..|+|++|.
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 56678888888888887654432222 2378888888888876655443333344557888888888874
No 50
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.42 E-value=1.8e-08 Score=112.56 Aligned_cols=175 Identities=23% Similarity=0.189 Sum_probs=125.2
Q ss_pred cCCceeEEEEcCcccccccccccCCccccEEecccccccccchhhhccCCccEEecCCCcchhhhhhcccccCCCCeeec
Q 035550 528 KLQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLDN 607 (1385)
Q Consensus 528 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 607 (1385)
.+..-...||+.|.+.++|..++.+..|..|.|.+|.|..+|..+++|..|.+|||+.| .+..+|..++.|+ |+.|-+
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEE
Confidence 34555678999999999999999999999999999999999999999999999999996 7899999998885 899999
Q ss_pred CCCCCcccccCCCCcccccccccceEecCCCCcChhhhcccccccceeEEeccCCCCCcchhHHhhcCCCCCCceEEEEE
Q 035550 608 LDTGSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGIRELKLLTHLRGTLNISKLENVKDIGDAKEAQLDGKKNLKVLKFQW 687 (1385)
Q Consensus 608 ~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 687 (1385)
++| +++.+|.+++.+..|..|....+. ....+..+.++..|+.|.+..
T Consensus 151 sNN-kl~~lp~~ig~~~tl~~ld~s~ne-------------------------------i~slpsql~~l~slr~l~vrR 198 (722)
T KOG0532|consen 151 SNN-KLTSLPEEIGLLPTLAHLDVSKNE-------------------------------IQSLPSQLGYLTSLRDLNVRR 198 (722)
T ss_pred ecC-ccccCCcccccchhHHHhhhhhhh-------------------------------hhhchHHhhhHHHHHHHHHhh
Confidence 988 899999999977777666321111 111222333444444444444
Q ss_pred ccCCCCCCchhhhhHHhhcccCCCCCCccceEEeccCCCCCCcccCCCCcccccEEEeeCCCCC
Q 035550 688 TQSTNDLSSREAETEKDVLVMLKPHENLEQFCISGYEGKEFPTWLGDSSFSNLATLKFEDCGVC 751 (1385)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~ 751 (1385)
|.... +.+.+..+ .|..|+++.|+...+|-.+.. +..|++|.|.+|.+.
T Consensus 199 n~l~~------------lp~El~~L-pLi~lDfScNkis~iPv~fr~--m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 199 NHLED------------LPEELCSL-PLIRLDFSCNKISYLPVDFRK--MRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhh------------CCHHHhCC-ceeeeecccCceeecchhhhh--hhhheeeeeccCCCC
Confidence 43221 11222211 366677777777777766643 677777777777664
No 51
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.40 E-value=1.2e-07 Score=94.66 Aligned_cols=99 Identities=28% Similarity=0.378 Sum_probs=35.0
Q ss_pred ccCCceeEEEEcCccccccccccc-CCccccEEecccccccccchhhhccCCccEEecCCCcchhhhhhcc-cccCCCCe
Q 035550 527 FKLQRLRVFSLRGYYISELPDSFG-DLRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLCADM-GNLIKLHH 604 (1385)
Q Consensus 527 ~~l~~Lr~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~ 604 (1385)
.+...+|.|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..|++|++|++++| .+..+++.+ ..+++|++
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCCE
Confidence 45567899999999999884 465 6899999999999999985 5889999999999997 677776666 47999999
Q ss_pred eecCCCCCcccccC--CCCcccccccc
Q 035550 605 LDNLDTGSLEEMPL--GIGKLTCLQTL 629 (1385)
Q Consensus 605 L~l~~~~~~~~lp~--~i~~L~~L~~L 629 (1385)
|++++| .+.++-. .+..+++|+.|
T Consensus 93 L~L~~N-~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 93 LYLSNN-KISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp EE-TTS----SCCCCGGGGG-TT--EE
T ss_pred EECcCC-cCCChHHhHHHHcCCCccee
Confidence 999999 5655432 13444555544
No 52
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=3.3e-07 Score=74.73 Aligned_cols=58 Identities=31% Similarity=0.501 Sum_probs=48.5
Q ss_pred CceeEEEEcCccccccc-ccccCCccccEEecccccccccc-hhhhccCCccEEecCCCc
Q 035550 530 QRLRVFSLRGYYISELP-DSFGDLRYLRYLNLSLTEIRTLP-ESVNKLYNLHTLLLEGCR 587 (1385)
Q Consensus 530 ~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~lP-~~i~~L~~L~~L~L~~~~ 587 (1385)
++|++|++++|.|+.+| ..|.++++|++|++++|.++.+| ..|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 46888999999888887 57888899999999999888777 567888888888888873
No 53
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.36 E-value=1.1e-06 Score=95.20 Aligned_cols=172 Identities=26% Similarity=0.341 Sum_probs=99.9
Q ss_pred CccCCeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHH
Q 035550 113 LVNEAKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLT 192 (1385)
Q Consensus 113 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 192 (1385)
++...+++|....+.++++ . ..+.-..+||++|+||||||+.+.. .....| ..++...+-.+-+
T Consensus 26 ~vGQ~HLlg~~~~lrr~v~---~------~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdl 89 (436)
T COG2256 26 VVGQEHLLGEGKPLRRAVE---A------GHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDL 89 (436)
T ss_pred hcChHhhhCCCchHHHHHh---c------CCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHH
Confidence 3444556666666555543 1 2355566899999999999999987 333344 2333332222222
Q ss_pred HHHHHHhcCCCCCCccCHHHHHHHH-HhHcCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEE--EccchhHh--
Q 035550 193 KSILLSIASDQIVDNHDLNKLQEEL-KKKLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIV--TARNQGVA-- 267 (1385)
Q Consensus 193 ~~i~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v~-- 267 (1385)
++++ +.- +....+++.+|++|.|+.-+..+-+.+. |.-..|.-|+| ||-++...
T Consensus 90 r~i~------------------e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL---p~vE~G~iilIGATTENPsF~ln 148 (436)
T COG2256 90 REII------------------EEARKNRLLGRRTILFLDEIHRFNKAQQDALL---PHVENGTIILIGATTENPSFELN 148 (436)
T ss_pred HHHH------------------HHHHHHHhcCCceEEEEehhhhcChhhhhhhh---hhhcCCeEEEEeccCCCCCeeec
Confidence 2222 222 2233589999999999765444444443 44456777776 66665321
Q ss_pred h-hhCCCCcccCCCCChhhhHHHhhhhccCcCCCCC--chhH-HHHHHHHHHhcCCCc
Q 035550 268 A-IMGTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSS--NKSL-EEIGKKIVIKCNGLP 321 (1385)
Q Consensus 268 ~-~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~--~~~~-~~~~~~i~~~~~g~P 321 (1385)
. ......++++++|+.++-.+++.+.+........ ...+ ++.-.-+++.++|--
T Consensus 149 ~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 149 PALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred HHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 1 1234578999999999999999883321111111 0111 235556788888754
No 54
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.36 E-value=1.6e-06 Score=93.96 Aligned_cols=170 Identities=14% Similarity=0.157 Sum_probs=97.7
Q ss_pred chhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcC
Q 035550 122 RETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIAS 201 (1385)
Q Consensus 122 r~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 201 (1385)
.+..++++..++.. .....|.|+|.+|+|||++|+.+++. ........++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~------~~------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQ------AD------ 81 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHH------hH------
Confidence 45567777776532 23468889999999999999999974 222333455665433211 00
Q ss_pred CCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCcc-cc-ccccCcccC-CCCCcEEEEEccchh---------Hhhh
Q 035550 202 DQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYN-DW-DRLRPPFEA-GAPGSKIIVTARNQG---------VAAI 269 (1385)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~ 269 (1385)
. .+...+.+. -+||+||++.-... .| +.+...+.. ...+.+||+||+... +...
T Consensus 82 ---------~----~~~~~~~~~-~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 82 ---------P----EVLEGLEQA-DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred ---------H----HHHhhcccC-CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 0 011112222 38999999543221 22 233333322 123457888887532 2222
Q ss_pred hCCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHHhh
Q 035550 270 MGTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGG 329 (1385)
Q Consensus 270 ~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 329 (1385)
+.....+++.+++.++...++...+........ .+..+.|++.+.|.|..+..+..
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRGLQLP----DEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhccCCHHHHHHHHH
Confidence 222457899999999999988775432211111 24456677788888877766543
No 55
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=5.6e-09 Score=106.79 Aligned_cols=181 Identities=18% Similarity=0.167 Sum_probs=117.3
Q ss_pred cccceeEEcccCcchh-hhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccc--cCCCCCccce
Q 035550 1138 SSLKSLVVWSCSKLES-IAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPK--GLHNLTSLQE 1214 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~-~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~--~l~~l~~L~~ 1214 (1385)
+.|+.|||+.-.++.. +...++.+..|+.|.|.++.+-..+...+..-.+|+.|+|+.|....+-.. -+.+|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 5699999998887764 455678899999999999997776766777778999999999986654322 3578899999
Q ss_pred eeccccCCCCCCcccC--CCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCCC
Q 035550 1215 LTIGIGGALPSLEEED--GLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPL 1292 (1385)
Q Consensus 1215 L~L~~n~~~~~~~~~~--~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~ 1292 (1385)
|+|++|......-... ..-++|+.|+|+|+... +.. +++......
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn-------------------------------l~~--sh~~tL~~r 311 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN-------------------------------LQK--SHLSTLVRR 311 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh-------------------------------hhh--hHHHHHHHh
Confidence 9999997654431110 12344555555554311 111 122222334
Q ss_pred Ccccceeeccccccccc-ccccCCCCCCCCeEeccCCCCCCC--CCCCCCCCccceeeecCC
Q 035550 1293 PASLTSLWIFNFPNLER-LSSSIVDLQNLTELKLHNCPKLKY--FPEKGLPSSLLQLQIVGC 1351 (1385)
Q Consensus 1293 ~~~L~~L~l~~~~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~--l~~~~~~~sL~~L~i~~c 1351 (1385)
+++|.+||+++|..++. ....+.+++.|++|.++.|-.+-- +-+..-.++|.+|++.+|
T Consensus 312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred CCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 55666666666655554 223677888888888888864321 111123478888888887
No 56
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.31 E-value=1.5e-07 Score=96.30 Aligned_cols=86 Identities=27% Similarity=0.229 Sum_probs=70.1
Q ss_pred ccccccCCceeEEEEcCcccccccccccCCccccEEecccccccccchhhhccCCccEEecCCCcchhhhhhcccccCCC
Q 035550 523 LPKLFKLQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKL 602 (1385)
Q Consensus 523 ~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 602 (1385)
...+..++.|..|||++|.|+.+.++..-++.+|+|++|+|.|..+-. +..|++|+.|||++| .+..+-..=.+|-+.
T Consensus 277 ~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 277 LVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNI 354 (490)
T ss_pred EEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCE
Confidence 344566788999999999999998888888999999999999987744 888999999999986 566664444677788
Q ss_pred CeeecCCC
Q 035550 603 HHLDNLDT 610 (1385)
Q Consensus 603 ~~L~l~~~ 610 (1385)
+.|.+++|
T Consensus 355 KtL~La~N 362 (490)
T KOG1259|consen 355 KTLKLAQN 362 (490)
T ss_pred eeeehhhh
Confidence 88888887
No 57
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=9.1e-06 Score=92.17 Aligned_cols=180 Identities=17% Similarity=0.238 Sum_probs=113.7
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCc----cccccCCcEEEEEe-CCCCCHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDK----QVQDHFDLKAWTCV-SDDFDVIRL 191 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~----~~~~~f~~~~wv~~-~~~~~~~~~ 191 (1385)
.+++|.+..++.+..++.... -.....++|+.|+||||+|+.+++.. ....|.|...|... +......+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 357899999999999985432 24577899999999999999988621 12345565555432 22222222
Q ss_pred HHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchhHh-hhh
Q 035550 192 TKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQGVA-AIM 270 (1385)
Q Consensus 192 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~-~~~ 270 (1385)
.+++.+.+...+ ..+++-++|+|++..-+...+..+...+.....++.+|++|.+.+.. ..+
T Consensus 78 ir~~~~~~~~~p-----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI 140 (313)
T PRK05564 78 IRNIIEEVNKKP-----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTI 140 (313)
T ss_pred HHHHHHHHhcCc-----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence 222222221111 12455577788775555567888888887766788888888765422 222
Q ss_pred -CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHH
Q 035550 271 -GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 327 (1385)
Q Consensus 271 -~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 327 (1385)
.....+++.+++.++....+.+...+ .. .+.++.++..++|.|..+...
T Consensus 141 ~SRc~~~~~~~~~~~~~~~~l~~~~~~----~~----~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 141 KSRCQIYKLNRLSKEEIEKFISYKYND----IK----EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred HhhceeeeCCCcCHHHHHHHHHHHhcC----CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 22368999999999998888654311 11 233567899999998765433
No 58
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.28 E-value=6.1e-07 Score=87.58 Aligned_cols=117 Identities=17% Similarity=0.194 Sum_probs=77.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccc---ccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhH
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQ---DHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKK 220 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (1385)
-+++.|+|.+|+|||++++.+.++.... ..-..++|+.+....+...+.+.++.+++.... ...+.+.+.+.+.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK-SRQTSDELRSLLIDA 82 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS-STS-HHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc-ccCCHHHHHHHHHHH
Confidence 4689999999999999999999842110 003456799998888999999999999988765 335667777778777
Q ss_pred cCCC-eEEEEEecCCCC-CccccccccCcccCCCCCcEEEEEccc
Q 035550 221 LSPK-KFLLVLDDVWNE-NYNDWDRLRPPFEAGAPGSKIIVTARN 263 (1385)
Q Consensus 221 l~~~-~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~ 263 (1385)
+... ..+||+||+..- ....++.+..... ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 7644 459999999433 2233344433222 456677776664
No 59
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=9.4e-06 Score=93.67 Aligned_cols=192 Identities=15% Similarity=0.178 Sum_probs=105.9
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.+++|.+..++.+...+.... -...+.++|+.|+||||+|+.+++...-..... ..+...-...+++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHh
Confidence 458899999999999885432 245678999999999999999987321100000 00000000001110
Q ss_pred HHh----cCCCCCCccCHHHHH---HHHHhH-cCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccch-hHh
Q 035550 197 LSI----ASDQIVDNHDLNKLQ---EELKKK-LSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQ-GVA 267 (1385)
Q Consensus 197 ~~~----~~~~~~~~~~~~~~~---~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~ 267 (1385)
... ..-........+++. +.+... ..+++-++|+|++..-+...++.+...+.......++|++|.+. .+.
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIP 163 (363)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence 000 000000001122222 111111 12455699999996554445666666665544566777766543 333
Q ss_pred hhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHH
Q 035550 268 AIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAA 324 (1385)
Q Consensus 268 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 324 (1385)
..+ .....+++.+++.++..+.+.+.+...+...+ ++.+..|++.++|.|-.+
T Consensus 164 ~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~----~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 164 KTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTD----EYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 222 22357999999999999888776533221111 245666899999987543
No 60
>PF13173 AAA_14: AAA domain
Probab=98.26 E-value=8.8e-07 Score=85.38 Aligned_cols=119 Identities=24% Similarity=0.286 Sum_probs=77.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPK 224 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 224 (1385)
+++.|.|+.|+||||++++++.+.. ....+++++..+....... ..+ +.+.+.+....+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~-----------------~~~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA-----------------DPD-LLEYFLELIKPG 61 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh-----------------hhh-hHHHHHHhhccC
Confidence 6899999999999999999997422 2345666665543221000 000 233344444447
Q ss_pred eEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchhHhhhh------CCCCcccCCCCChhhh
Q 035550 225 KFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQGVAAIM------GTAPAYQLKKLSNDDC 286 (1385)
Q Consensus 225 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~------~~~~~~~l~~L~~~~~ 286 (1385)
+.+++||++.. ..+|......+.+..+..+|++|+........- +....+++.||+..|.
T Consensus 62 ~~~i~iDEiq~--~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQY--LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhh--hccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 88999999944 467877766666655668999999987665331 1224688999988774
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.26 E-value=3.8e-06 Score=94.11 Aligned_cols=54 Identities=24% Similarity=0.568 Sum_probs=32.2
Q ss_pred CCCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccc
Q 035550 1135 NLPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNC 1196 (1385)
Q Consensus 1135 ~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n 1196 (1385)
.+|++|++|.+++|..+..+|..+ .++|++|++++|..+..+|. +|+.|+++++
T Consensus 69 ~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n 122 (426)
T PRK15386 69 VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIKGS 122 (426)
T ss_pred CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeCCC
Confidence 355667777777776666666544 24667777776655555553 4555555543
No 62
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.26 E-value=7.4e-07 Score=93.26 Aligned_cols=47 Identities=28% Similarity=0.424 Sum_probs=32.2
Q ss_pred eeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 118 KVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 118 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
+||||+++++++...+... .....+.+.|+|.+|+|||+|+++++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999522 2345689999999999999999999884
No 63
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.25 E-value=3.9e-06 Score=85.22 Aligned_cols=183 Identities=20% Similarity=0.226 Sum_probs=92.1
Q ss_pred CCeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHH
Q 035550 116 EAKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSI 195 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 195 (1385)
-.+|||.+.-++.+.-++..... .+....-+.+||++|+||||||.-+++. ....|. +.+... .+-..-+..+
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~~-i~k~~dl~~i 95 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGPA-IEKAGDLAAI 95 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECCC---SCHHHHHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccchh-hhhHHHHHHH
Confidence 35799999988887655543211 2235677889999999999999999983 333342 222211 1101111122
Q ss_pred HHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccccccccCcccC--------C-----------CCCcE
Q 035550 196 LLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPFEA--------G-----------APGSK 256 (1385)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~--------~-----------~~gs~ 256 (1385)
+..+ +++-+|.+|+++.-+..+-+.+...+.+ . .+-+-
T Consensus 96 l~~l-----------------------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 96 LTNL-----------------------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp HHT-------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred HHhc-----------------------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 2222 1233555566644322211111111110 0 11234
Q ss_pred EEEEccchhHhhhhCCC--CcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHHhhhhc
Q 035550 257 IIVTARNQGVAAIMGTA--PAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLR 332 (1385)
Q Consensus 257 ilvTtR~~~v~~~~~~~--~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~ 332 (1385)
|=.|||...+......- -..+++..+.+|-.++..+.|..-.. +--++.+.+|++++.|-|--+.-+-+..+
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i----~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI----EIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 55688886665544332 23579999999999999877643221 22347788899999999965554444443
No 64
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.24 E-value=6.5e-06 Score=95.53 Aligned_cols=198 Identities=14% Similarity=0.146 Sum_probs=104.4
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCC-cEEEEEeCCCCCH--HHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFD-LKAWTCVSDDFDV--IRLTK 193 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~--~~~~~ 193 (1385)
.+++|++..++.+..++... ..+.+.++|++|+||||+|+.+.+... ...+. ..+.+++++-.+. ..+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhc
Confidence 45889999999999988443 334678999999999999999887321 11111 2233443321100 00000
Q ss_pred --HHHHHhcCCCCCCccCHHHHHHHHHh---Hc--CCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchh-
Q 035550 194 --SILLSIASDQIVDNHDLNKLQEELKK---KL--SPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQG- 265 (1385)
Q Consensus 194 --~i~~~~~~~~~~~~~~~~~~~~~l~~---~l--~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~- 265 (1385)
.................+.+.+.++. .. .+.+-+||+||+..-.......+...+......+++|+||....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 00000000000000111222222222 11 23445899999944332333344444433344567887775432
Q ss_pred Hhhhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHH
Q 035550 266 VAAIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAK 325 (1385)
Q Consensus 266 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 325 (1385)
+...+ .....+++.+++.++....+.+.+........ .+....+++.++|.+-.+.
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~----~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD----DDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 22222 22346888999999998888876543222111 3456678888888765543
No 65
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.24 E-value=1.1e-06 Score=96.41 Aligned_cols=289 Identities=18% Similarity=0.203 Sum_probs=178.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccC-CcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF-DLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKL 221 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 221 (1385)
..+.+.++|.|||||||++-.+.. +...| +.+.++....-.|...+.-.+...++....+. +.....+....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g----~~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG----DSAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccc----hHHHHHHHHHH
Confidence 468899999999999999998886 45556 45556666666666666666666666544322 22344566667
Q ss_pred CCCeEEEEEecCCCCCc-cccccccCcccCCCCCcEEEEEccchhHhhhhCCCCcccCCCCChh-hhHHHhhhhccCcC-
Q 035550 222 SPKKFLLVLDDVWNENY-NDWDRLRPPFEAGAPGSKIIVTARNQGVAAIMGTAPAYQLKKLSND-DCLSVFAQHSLGTR- 298 (1385)
Q Consensus 222 ~~~~~LlVlDdv~~~~~-~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~a~~~~- 298 (1385)
.++|.++|+||. +.. +.-..+...+..+...-.|+.|+|..-. +..+.++.+.+|+.. ++.++|...+....
T Consensus 86 ~~rr~llvldnc--ehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 86 GDRRALLVLDNC--EHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred hhhhHHHHhcCc--HHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhcc
Confidence 788999999997 211 1111122223333445578888887533 234567788888775 78899877763222
Q ss_pred CCCCchhHHHHHHHHHHhcCCCchHHHHHhhhhcCCCCHHHHHHHHhhhhhhhccc-------cccchHHHHHhhhcCCh
Q 035550 299 DFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKDDRREWEDVLSSKIWELQEE-------RCDIIPALRVSYYYLSA 371 (1385)
Q Consensus 299 ~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~-------~~~i~~~l~~sy~~L~~ 371 (1385)
...-...-...+..|.++.+|.|++|..+++..+.- ...+-...+......+.+. .....+.+.+||.-|..
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 111112234677789999999999999999988765 3333333333222222221 12356689999999999
Q ss_pred hhhhhhhhhcccCCCcccChHHHHHHHHHcCCCccCCCCCcHHHHHHHHHHHHHHcCCccccC-CCCCeEEEchhHHHHH
Q 035550 372 PLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLGHKESGNPIEDLGRKFFQELRSRSFFQQSS-NNESRFVMHDLVNDLA 450 (1385)
Q Consensus 372 ~~k~cf~~~~~fp~~~~~~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~-~~~~~~~mhdlv~~~~ 450 (1385)
..+-.|.-++.|...+... ...|.+.|-... .........+..+++.+++.... .+...|+.-+-++.|+
T Consensus 240 we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Ya 310 (414)
T COG3903 240 WERALFGRLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYA 310 (414)
T ss_pred HHHHHhcchhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999998776554 233444432210 01123444467788888876533 2233444445555555
Q ss_pred Hhh
Q 035550 451 QWA 453 (1385)
Q Consensus 451 ~~~ 453 (1385)
...
T Consensus 311 lae 313 (414)
T COG3903 311 LAE 313 (414)
T ss_pred HHH
Confidence 433
No 66
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.23 E-value=9.6e-07 Score=104.85 Aligned_cols=173 Identities=23% Similarity=0.232 Sum_probs=102.2
Q ss_pred cccceeEEcccCcchhhhhhcCCCC-CCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceee
Q 035550 1138 SSLKSLVVWSCSKLESIAERLDNNT-SLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELT 1216 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~~~l~~l~-~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~ 1216 (1385)
+.++.|++.+|.+....+ ....+. +|+.|++++|. +..+|.....+++|+.|++++|+ +..+|.....+++|+.|+
T Consensus 116 ~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccccCcc-ccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhhee
Confidence 356777776665544333 233342 67777777776 55555556667777777777776 444554444677777777
Q ss_pred ccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCCCCccc
Q 035550 1217 IGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLPASL 1296 (1385)
Q Consensus 1217 L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~L 1296 (1385)
+++|. +..+|...+.+..|++|.+++|... ..+..+..+.++..+.+.+|... .+...+..+++|
T Consensus 193 ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~-----~~~~~~~~~~~l~~l~l~~n~~~---------~~~~~~~~l~~l 257 (394)
T COG4886 193 LSGNK-ISDLPPEIELLSALEELDLSNNSII-----ELLSSLSNLKNLSGLELSNNKLE---------DLPESIGNLSNL 257 (394)
T ss_pred ccCCc-cccCchhhhhhhhhhhhhhcCCcce-----ecchhhhhcccccccccCCceee---------eccchhcccccc
Confidence 77666 4445544445666777777777421 12234556666666665554210 012334455667
Q ss_pred ceeecccccccccccccCCCCCCCCeEeccCCCC
Q 035550 1297 TSLWIFNFPNLERLSSSIVDLQNLTELKLHNCPK 1330 (1385)
Q Consensus 1297 ~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 1330 (1385)
+.|+++++ .++.++. +..+.+|+.|++++..-
T Consensus 258 ~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 258 ETLDLSNN-QISSISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred ceeccccc-ccccccc-ccccCccCEEeccCccc
Confidence 77777774 5666664 66777777777777543
No 67
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.23 E-value=4e-06 Score=84.19 Aligned_cols=125 Identities=17% Similarity=0.084 Sum_probs=71.7
Q ss_pred eechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHh
Q 035550 120 YGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSI 199 (1385)
Q Consensus 120 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~ 199 (1385)
+|++..++++...+... ..+.+.|+|.+|+||||+|+++++... ..-..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47889999999888543 246888999999999999999998432 222346666655433322111111000
Q ss_pred cCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCc---cccccccCcccCC---CCCcEEEEEccchh
Q 035550 200 ASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENY---NDWDRLRPPFEAG---APGSKIIVTARNQG 265 (1385)
Q Consensus 200 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~---~~~~~l~~~l~~~---~~gs~ilvTtR~~~ 265 (1385)
............++.++|+||++.-.. ..+......+... ..+.+||+||....
T Consensus 72 ------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 011111222345678999999964311 1222222222211 35778888888653
No 68
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.1e-05 Score=95.59 Aligned_cols=193 Identities=13% Similarity=0.149 Sum_probs=108.3
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++...-.. |+.. .....-..-+.+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHHh
Confidence 468999999999999996442 246788999999999999999887321100 1100 0000000111111
Q ss_pred HHhcCC----CCCCccCHHHHHHHHHh----HcCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccch-hHh
Q 035550 197 LSIASD----QIVDNHDLNKLQEELKK----KLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQ-GVA 267 (1385)
Q Consensus 197 ~~~~~~----~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~ 267 (1385)
..-..+ ........+++.+.+.. -..+++-++|+|+|..-+...+..+...+.....+.++|++|.+. .+.
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 000000 00001122222222211 123566689999996655455666666565544566777777653 222
Q ss_pred hh-hCCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHH
Q 035550 268 AI-MGTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAK 325 (1385)
Q Consensus 268 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 325 (1385)
.. ......+++++++.++..+.+.+.+........ .+....|++.++|.+-.+.
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id----~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD----QDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 22 223368999999999999888776543222112 2455668899999774443
No 69
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.21 E-value=1.5e-07 Score=99.45 Aligned_cols=187 Identities=18% Similarity=0.129 Sum_probs=86.2
Q ss_pred CCCCCCcEEeecCCCCccccCCC----CCCccCcceEEeccccCccccc--------------ccCCCCCccceeecccc
Q 035550 1159 DNNTSLETISIDSCGNLVSFPEG----GLPCVKLRMLAITNCKRLEALP--------------KGLHNLTSLQELTIGIG 1220 (1385)
Q Consensus 1159 ~~l~~L~~L~L~~n~~l~~~~~~----~~~l~~L~~L~L~~n~~~~~lp--------------~~l~~l~~L~~L~L~~n 1220 (1385)
..++.|++|+||+|.+-...+.. +.++.+|++|+|.+|- ++..- .-..+-+.|+++..++|
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 34556666666666533222221 2234556666666654 22111 01123345666665555
Q ss_pred CCCCC----CcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhh-hhhccCcCCCCcc
Q 035550 1221 GALPS----LEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALE-DKRLGTALPLPAS 1295 (1385)
Q Consensus 1221 ~~~~~----~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~l~~~~~~~~~ 1295 (1385)
..-.. +...+...+.|+++.++.|.+...........+..+++|+.|||..|- |+.. .-.+...++.+++
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-----ft~egs~~LakaL~s~~~ 242 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-----FTLEGSVALAKALSSWPH 242 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-----hhhHHHHHHHHHhcccch
Confidence 43211 222333455666666666654433333333445666666666666642 1111 0112234455556
Q ss_pred cceeeccccccccc-----ccc-cCCCCCCCCeEeccCCCCCCCCCC------CCCCCccceeeecCChh
Q 035550 1296 LTSLWIFNFPNLER-----LSS-SIVDLQNLTELKLHNCPKLKYFPE------KGLPSSLLQLQIVGCPL 1353 (1385)
Q Consensus 1296 L~~L~l~~~~~l~~-----l~~-~~~~l~~L~~L~l~~c~~l~~l~~------~~~~~sL~~L~i~~c~~ 1353 (1385)
|+.|.+.+| ++++ +-. .-...|+|+.|.+.+|. ++.=.. ..-.+.|..|++++|..
T Consensus 243 L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 243 LRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred heeeccccc-ccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 666666666 3332 111 12235666666666652 433110 00135666777776654
No 70
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.20 E-value=2.2e-06 Score=91.56 Aligned_cols=90 Identities=19% Similarity=0.190 Sum_probs=62.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCC--CCHHHHHHHHHHHhcCCCCCCccC-----HHHHHH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD--FDVIRLTKSILLSIASDQIVDNHD-----LNKLQE 215 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~ 215 (1385)
....++|+|++|+|||||+++++++.... +|+.++|+.+... +++.++++.+...+.......... ......
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34688999999999999999999975443 8999999997776 789999999844333322211110 111222
Q ss_pred HHHhH-cCCCeEEEEEecC
Q 035550 216 ELKKK-LSPKKFLLVLDDV 233 (1385)
Q Consensus 216 ~l~~~-l~~~~~LlVlDdv 233 (1385)
..... -.+++.++++|++
T Consensus 94 ~a~~~~~~G~~vll~iDei 112 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSI 112 (249)
T ss_pred HHHHHHHCCCCEEEEEECH
Confidence 22222 2589999999999
No 71
>PRK04195 replication factor C large subunit; Provisional
Probab=98.20 E-value=4.5e-05 Score=91.86 Aligned_cols=247 Identities=15% Similarity=0.122 Sum_probs=133.0
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.+++|.++.++++..|+..... + ...+.+.|+|++|+||||+|+.++++. .|+ ++-++.++.... .....++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~-g-~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~~-~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK-G-KPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRTA-DVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc-C-CCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccccH-HHHHHHH
Confidence 4589999999999999865321 1 225789999999999999999999843 122 223344432222 2233333
Q ss_pred HHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCc----cccccccCcccCCCCCcEEEEEccchh-Hhh-hh
Q 035550 197 LSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENY----NDWDRLRPPFEAGAPGSKIIVTARNQG-VAA-IM 270 (1385)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~-~~ 270 (1385)
........ ....++-+||+|+++.-.. ..+..+...+.. .+..||+|+.+.. ... .+
T Consensus 86 ~~~~~~~s---------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 86 GEAATSGS---------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHhhccCc---------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhH
Confidence 32221110 0113677999999954321 123344433332 2345666664421 111 11
Q ss_pred -CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHHhhhhcC-CC--CHHHHHHHHhh
Q 035550 271 -GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRG-KD--DRREWEDVLSS 346 (1385)
Q Consensus 271 -~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~-~~--~~~~w~~~l~~ 346 (1385)
.....+++.+++.++....+.+.+.......+ .+....|++.++|-.-.+......+.. +. +.+....+..
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~- 223 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR- 223 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc-
Confidence 22357889999999998888877643332222 245677899999866555433222322 21 1222222221
Q ss_pred hhhhhccccccchHHHHHhhh-cCChhhhhhhhhhcccCCCcccChHHHHHHHHHcCCCcc
Q 035550 347 KIWELQEERCDIIPALRVSYY-YLSAPLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLGH 406 (1385)
Q Consensus 347 ~~~~~~~~~~~i~~~l~~sy~-~L~~~~k~cf~~~~~fp~~~~~~~~~li~~w~a~g~~~~ 406 (1385)
.+....++.++..-+. .-+......+.. ..++. ..+..|+.+.+...
T Consensus 224 -----~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 -----RDREESIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred -----CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhccccc
Confidence 1122356666654444 222223222221 12233 45778999999764
No 72
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=3.6e-08 Score=101.06 Aligned_cols=158 Identities=20% Similarity=0.231 Sum_probs=101.6
Q ss_pred CCccEEEeccCCCcccccccCCCchhhhccccCCCCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccC--
Q 035550 1102 SLLEELHISSCQSLTCIFSKNELPATLESLEVGNLPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFP-- 1179 (1385)
Q Consensus 1102 ~~L~~L~l~~c~~L~~l~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~-- 1179 (1385)
+.|+.++++.-. ++. ..+.+.+... ..|+.|.|.++.....+...+..-.+|+.|+|+.|..++...
T Consensus 185 sRlq~lDLS~s~-it~----stl~~iLs~C------~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ 253 (419)
T KOG2120|consen 185 SRLQHLDLSNSV-ITV----STLHGILSQC------SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQ 253 (419)
T ss_pred hhhHHhhcchhh-eeH----HHHHHHHHHH------HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHH
Confidence 468888887632 110 1111222222 579999999999998888888888999999999998776532
Q ss_pred CCCCCccCcceEEeccccCccccccc-CC-CCCccceeeccccCCCCC---CcccCCCCCCcceeEecCCcchhhhhhhc
Q 035550 1180 EGGLPCVKLRMLAITNCKRLEALPKG-LH-NLTSLQELTIGIGGALPS---LEEEDGLPTNLQSLNIWGNMEIWKSMIER 1254 (1385)
Q Consensus 1180 ~~~~~l~~L~~L~L~~n~~~~~lp~~-l~-~l~~L~~L~L~~n~~~~~---~~~~~~~~~~L~~L~L~~n~~~~~~~~~~ 1254 (1385)
--+.+++.|.+|+|+.|-.....-.. +. --++|..|+|+++...-. +.--...+++|.+||||+|..+.....
T Consensus 254 ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~-- 331 (419)
T KOG2120|consen 254 LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF-- 331 (419)
T ss_pred HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH--
Confidence 23557899999999999766544221 11 235899999998863211 111123577777777777753332111
Q ss_pred CccCCCCCccceEEecccC
Q 035550 1255 GRGFHRFSSLRYLLISGCD 1273 (1385)
Q Consensus 1255 ~~~l~~l~~L~~L~l~~~~ 1273 (1385)
..|.+++.|++|.++.|.
T Consensus 332 -~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 332 -QEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred -HHHHhcchheeeehhhhc
Confidence 234566666777776664
No 73
>PTZ00202 tuzin; Provisional
Probab=98.19 E-value=1.9e-05 Score=87.60 Aligned_cols=168 Identities=13% Similarity=0.141 Sum_probs=102.7
Q ss_pred cCccCCeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHH
Q 035550 112 SLVNEAKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRL 191 (1385)
Q Consensus 112 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 191 (1385)
.+.+.+.|+||+++..++...|...+. ...+++.|+|++|+|||||++.+..... ...++.-.. +..++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNpr--g~eEl 325 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVR--GTEDT 325 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCC--CHHHH
Confidence 345577899999999999999965432 2346999999999999999999987432 122222222 67999
Q ss_pred HHHHHHHhcCCCCCCc-cCHHHHHHHHHhHc-C-CCeEEEEEecCCCCCcccccccc---CcccCCCCCcEEEEEccchh
Q 035550 192 TKSILLSIASDQIVDN-HDLNKLQEELKKKL-S-PKKFLLVLDDVWNENYNDWDRLR---PPFEAGAPGSKIIVTARNQG 265 (1385)
Q Consensus 192 ~~~i~~~~~~~~~~~~-~~~~~~~~~l~~~l-~-~~~~LlVlDdv~~~~~~~~~~l~---~~l~~~~~gs~ilvTtR~~~ 265 (1385)
++.++.+++....... .-.+.+.+.+.+.- . +++.+||+-==.. ..+..+. ..+.....-|+|++----+.
T Consensus 326 Lr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg---~~l~rvyne~v~la~drr~ch~v~evples 402 (550)
T PTZ00202 326 LRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREG---SSLQRVYNEVVALACDRRLCHVVIEVPLES 402 (550)
T ss_pred HHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCC---CcHHHHHHHHHHHHccchhheeeeeehHhh
Confidence 9999999997432111 11233344433322 2 6677777653211 1111111 11233345677877555443
Q ss_pred Hhhhh---CCCCcccCCCCChhhhHHHhhhh
Q 035550 266 VAAIM---GTAPAYQLKKLSNDDCLSVFAQH 293 (1385)
Q Consensus 266 v~~~~---~~~~~~~l~~L~~~~~~~lf~~~ 293 (1385)
+.... ..-..|-+++++.++|.++..+.
T Consensus 403 lt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 403 LTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred cchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 32211 11256889999999998887654
No 74
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=3.8e-05 Score=91.97 Aligned_cols=194 Identities=15% Similarity=0.197 Sum_probs=110.3
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.++||.+..++.|..++.... -...+.++|..|+||||+|+.+.+...-+..+. +.....-...+.|.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~ 83 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREID 83 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHh
Confidence 468999999999999985432 245667999999999999998876321111110 00000001111111
Q ss_pred HH----h-cCCCCCCccCHHHHHHHHHhH----cCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchh-H
Q 035550 197 LS----I-ASDQIVDNHDLNKLQEELKKK----LSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQG-V 266 (1385)
Q Consensus 197 ~~----~-~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v 266 (1385)
.. + ..... .....+++.+.+... ..++.-++|||+++.-+...|..+...+.......++|+||.+.. +
T Consensus 84 ~G~h~DviEIDAa-s~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KI 162 (830)
T PRK07003 84 EGRFVDYVEMDAA-SNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKI 162 (830)
T ss_pred cCCCceEEEeccc-ccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhc
Confidence 00 0 00000 111222322222221 124555889999966555567777766655555778887777643 3
Q ss_pred hhhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCc-hHHHHH
Q 035550 267 AAIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLP-LAAKTL 327 (1385)
Q Consensus 267 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~ 327 (1385)
...+ ..-..+.+++++.++..+.+.+.+........ .+....|++.++|.. -|+..+
T Consensus 163 p~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id----~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 163 PVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE----PQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred cchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 2222 12357999999999999988876533221111 245566899998855 455543
No 75
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=1.5e-05 Score=97.38 Aligned_cols=181 Identities=15% Similarity=0.147 Sum_probs=109.2
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccc-------------------CCcE
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDH-------------------FDLK 177 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 177 (1385)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++...-... |.-+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 468999999999999885432 2355689999999999999999874211111 0011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHh-HcCCCeEEEEEecCCCCCccccccccCcccCCCCCcE
Q 035550 178 AWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKK-KLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSK 256 (1385)
Q Consensus 178 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 256 (1385)
+++...... ...++.++.+.+.. ...+++-++|||++..-+...++.++..+.......+
T Consensus 91 iEidAas~~-------------------kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vr 151 (944)
T PRK14949 91 IEVDAASRT-------------------KVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVK 151 (944)
T ss_pred EEecccccc-------------------CHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeE
Confidence 111111000 11112222222221 1246677999999966665667777666655445566
Q ss_pred EEEEccc-hhHhhhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHH
Q 035550 257 IIVTARN-QGVAAIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAK 325 (1385)
Q Consensus 257 ilvTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 325 (1385)
+|++|.+ ..+...+ .....|++++++.++..+.+.+.+-...... -.+....|++.++|.|--+.
T Consensus 152 FILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~----edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 152 FLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPF----EAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred EEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 6665554 3343232 2236899999999999998887653221111 12456679999999885443
No 76
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.17 E-value=1.9e-05 Score=96.80 Aligned_cols=173 Identities=19% Similarity=0.214 Sum_probs=106.0
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccC---CcEEEEEeCC---CCCHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF---DLKAWTCVSD---DFDVIR 190 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~---~~~~~~ 190 (1385)
++++|++..+.++.+.+... ....+.|+|++|+||||+|+.+++.......+ ...-|+.+.. ..+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 46899999999988877432 23579999999999999999998753322222 1223444432 112222
Q ss_pred HHHHH---------------HHHhcCCCC---------------CCcc-CHHHHHHHHHhHcCCCeEEEEEecCCCCCcc
Q 035550 191 LTKSI---------------LLSIASDQI---------------VDNH-DLNKLQEELKKKLSPKKFLLVLDDVWNENYN 239 (1385)
Q Consensus 191 ~~~~i---------------~~~~~~~~~---------------~~~~-~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~ 239 (1385)
+...+ +...+.... .+.. -....+..+.+.++++++.++-|+.|.++..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 21111 111111000 0011 1223577888889999999998888877777
Q ss_pred ccccccCcccCCCCCcEEEE--EccchhH-hhhh-CCCCcccCCCCChhhhHHHhhhhcc
Q 035550 240 DWDRLRPPFEAGAPGSKIIV--TARNQGV-AAIM-GTAPAYQLKKLSNDDCLSVFAQHSL 295 (1385)
Q Consensus 240 ~~~~l~~~l~~~~~gs~ilv--TtR~~~v-~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~ 295 (1385)
.|+.+...+....+...|++ ||++... ...+ .....+.+.+++.+|.+.++.+.+-
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence 88888877766555555555 5665432 1111 1123677889999999999988653
No 77
>PLN03025 replication factor C subunit; Provisional
Probab=98.17 E-value=1e-05 Score=91.98 Aligned_cols=180 Identities=13% Similarity=0.147 Sum_probs=100.4
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCC-cEEEEEeCCCCCHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFD-LKAWTCVSDDFDVIRLTKSI 195 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 195 (1385)
.+++|.++.++.|..++... ..+-+.++|++|+||||+|+.+++.. ....|. .++-+..++..+.. ..+++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHH
Confidence 45789999888888877433 23457799999999999999998732 111222 11112222222211 22222
Q ss_pred HHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccch-hHhhhh-CCC
Q 035550 196 LLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQ-GVAAIM-GTA 273 (1385)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~-~~~ 273 (1385)
+..+..... . .-.++.-++|+|++..-+......+...+......+++++++... .+...+ ...
T Consensus 85 i~~~~~~~~-~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 85 IKMFAQKKV-T-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHHHHhccc-c-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 222111000 0 002346689999995544333444444443334556777766442 222211 122
Q ss_pred CcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCch
Q 035550 274 PAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPL 322 (1385)
Q Consensus 274 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL 322 (1385)
..++++++++++....+...+...+.... .+....|++.++|-.-
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMR 195 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHH
Confidence 57899999999999888877643322122 2455678888988653
No 78
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=3e-06 Score=100.54 Aligned_cols=198 Identities=16% Similarity=0.156 Sum_probs=110.6
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.+++|.+..++.|..++.... -...+.++|++|+||||+|+.+++...-.+.+...+|.|.+-.. .......-+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCce
Confidence 458999999999988885432 23567899999999999999998743211222223333221100 000000000
Q ss_pred HHhcCCCCCCccCHHHHHHHHHh-HcCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccc-hhHhhhhC-CC
Q 035550 197 LSIASDQIVDNHDLNKLQEELKK-KLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARN-QGVAAIMG-TA 273 (1385)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~~-~~ 273 (1385)
..+.........+..++.+.+.. -..+++-++|+|+++..+...++.+...+........+|++|.. ..+...+. ..
T Consensus 88 ~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 88 LEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 00000000011112222222221 12356668999999765555677777666554455565555543 33333332 23
Q ss_pred CcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHH
Q 035550 274 PAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAA 324 (1385)
Q Consensus 274 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 324 (1385)
..+++.+++.++....+.+.+...+.... .+....|++.++|.+--+
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi~i~----~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGREAE----PEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 57999999999999999887643322111 245667999999988544
No 79
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.16 E-value=2.5e-06 Score=69.61 Aligned_cols=58 Identities=21% Similarity=0.319 Sum_probs=24.8
Q ss_pred CCcEEeecCCCCccccC-CCCCCccCcceEEeccccCcccccccCCCCCccceeeccccC
Q 035550 1163 SLETISIDSCGNLVSFP-EGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIGG 1221 (1385)
Q Consensus 1163 ~L~~L~L~~n~~l~~~~-~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~ 1221 (1385)
+|++|++++|. +..+| ..+..+++|++|++++|.+...-|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444443 22222 233344444444444444333333344444444444444443
No 80
>PLN03150 hypothetical protein; Provisional
Probab=98.16 E-value=1.8e-06 Score=106.88 Aligned_cols=92 Identities=23% Similarity=0.292 Sum_probs=82.9
Q ss_pred ceeEEEEcCcccc-cccccccCCccccEEeccccccc-ccchhhhccCCccEEecCCCcchhhhhhcccccCCCCeeecC
Q 035550 531 RLRVFSLRGYYIS-ELPDSFGDLRYLRYLNLSLTEIR-TLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLDNL 608 (1385)
Q Consensus 531 ~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~i~-~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 608 (1385)
.++.|+|++|.++ .+|..|+.|.+|++|+|++|.+. .+|..++.+++|++|+|++|.....+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4889999999998 67999999999999999999998 899999999999999999987777899999999999999999
Q ss_pred CCCCcccccCCCCc
Q 035550 609 DTGSLEEMPLGIGK 622 (1385)
Q Consensus 609 ~~~~~~~lp~~i~~ 622 (1385)
+|.....+|..++.
T Consensus 499 ~N~l~g~iP~~l~~ 512 (623)
T PLN03150 499 GNSLSGRVPAALGG 512 (623)
T ss_pred CCcccccCChHHhh
Confidence 99666688877654
No 81
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=3.8e-05 Score=87.28 Aligned_cols=205 Identities=15% Similarity=0.147 Sum_probs=124.7
Q ss_pred eeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccC--CcEEEEEeCCCCCHHHHHHHH
Q 035550 118 KVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF--DLKAWTCVSDDFDVIRLTKSI 195 (1385)
Q Consensus 118 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i 195 (1385)
.+.+|+++++++...|...-. +. ...-+.|+|..|.|||+.++.|.+. ++... ..++.|++....+..+++..|
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~-~~-~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR-GE-RPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc-CC-CCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 388999999999998865432 11 2223889999999999999999984 33322 117899999999999999999
Q ss_pred HHHhcCCCCCCccCHHHHHHHHHhHcC--CCeEEEEEecCCCCCccccccccCcccCCCC-CcEEEE--EccchhHhhhh
Q 035550 196 LLSIASDQIVDNHDLNKLQEELKKKLS--PKKFLLVLDDVWNENYNDWDRLRPPFEAGAP-GSKIIV--TARNQGVAAIM 270 (1385)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~-gs~ilv--TtR~~~v~~~~ 270 (1385)
+.+++.... ......+..+.+.+.+. ++.+++|||++..-....-+.+...+..... .++|++ .+-+......+
T Consensus 94 ~~~~~~~p~-~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 94 LNKLGKVPL-TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHHcCCCCC-CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHh
Confidence 999974333 34555666677777664 6899999999932111111223333333222 344433 33333332222
Q ss_pred C-------CCCcccCCCCChhhhHHHhhhhccCc-CCCCCchhHHHHHHHHHHhcCC-CchHHHHH
Q 035550 271 G-------TAPAYQLKKLSNDDCLSVFAQHSLGT-RDFSSNKSLEEIGKKIVIKCNG-LPLAAKTL 327 (1385)
Q Consensus 271 ~-------~~~~~~l~~L~~~~~~~lf~~~a~~~-~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~ 327 (1385)
. ....+..+|-+.+|-...+..++-.. ......++..++...++..-+| --.||..+
T Consensus 173 d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 173 DPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 1 11247788899999999888876321 1112223333444444444443 44455443
No 82
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=1.9e-05 Score=93.20 Aligned_cols=194 Identities=14% Similarity=0.155 Sum_probs=109.1
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccc--CCcEEEEEeCCCCCHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDH--FDLKAWTCVSDDFDVIRLTKS 194 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~ 194 (1385)
.++||-+..++.|..++.... -...+.++|..|+||||+|+.+.+...-... -.... +.....-..-+.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~C~sC~~ 86 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQCRACTE 86 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcccHHHHH
Confidence 468999999999999996542 2456789999999999999998763211000 00000 000000001111
Q ss_pred HHH-------HhcCCCCCCccCHHHHHHHHHhH----cCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEE-Ecc
Q 035550 195 ILL-------SIASDQIVDNHDLNKLQEELKKK----LSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIV-TAR 262 (1385)
Q Consensus 195 i~~-------~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR 262 (1385)
|.. .+... .....+++.+.+... ..++.-++|||+++.-+...++.+...+.....+.++|+ ||.
T Consensus 87 I~aG~hpDviEIdAa---s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 87 IDAGRFVDYIEMDAA---SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred HHcCCCCcceEeccc---ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCC
Confidence 100 00000 112233333322221 235666999999966665667777666655444556554 554
Q ss_pred chhHhhhhC-CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHH
Q 035550 263 NQGVAAIMG-TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKT 326 (1385)
Q Consensus 263 ~~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 326 (1385)
...+...+. .-..+.++.++.++..+.+.+.+..... ... .+..+.|++.++|.|.....
T Consensus 164 p~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi-~~d---~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 164 PQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI-AHE---VNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred hHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHH
Confidence 444443332 2357999999999999988766532211 111 23456789999998864443
No 83
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=1.2e-05 Score=92.61 Aligned_cols=194 Identities=14% Similarity=0.106 Sum_probs=108.2
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.++||.+..+..|..++.... -...+.++|+.|+||||+|+.+++...-..... ...+.....-..+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~---~~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIG---NEPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccC---ccccCCCcHHHHHHccCC
Confidence 458999999999998885432 134678999999999999999987321110000 001111111111111110
Q ss_pred HHh---cCCCCCCccCHHHHHHHHHhH-cCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEE-EccchhHhhhhC
Q 035550 197 LSI---ASDQIVDNHDLNKLQEELKKK-LSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIV-TARNQGVAAIMG 271 (1385)
Q Consensus 197 ~~~---~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~~~~~ 271 (1385)
..+ .........+..++.+.+... ..++.-++|+|+++.-+...++.+...+........+|+ ||....+...+.
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 000 000000112222333333221 235666999999976666677777766654334455554 444444433332
Q ss_pred -CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCch
Q 035550 272 -TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPL 322 (1385)
Q Consensus 272 -~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL 322 (1385)
....|.+.+++.++..+.+.+.+...+.... .+....|++.++|.+-
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e----~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENVQYD----QEGLFWIAKKGDGSVR 217 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCChHH
Confidence 2357999999999998888776543221111 2456679999999874
No 84
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.11 E-value=2.5e-05 Score=82.86 Aligned_cols=127 Identities=20% Similarity=0.306 Sum_probs=82.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcC
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLS 222 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 222 (1385)
...-+.+||++|+||||||+.+....+-.. ..+|..|....-..-.++|+++... ...+.
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~----------------~~~l~ 220 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN----------------EKSLT 220 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH----------------HHhhh
Confidence 466777999999999999999998533222 5567766654444444444443321 11245
Q ss_pred CCeEEEEEecCCCCCccccccccCcccCCCCCcEEEE--EccchhHh---hhhCCCCcccCCCCChhhhHHHhhh
Q 035550 223 PKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIV--TARNQGVA---AIMGTAPAYQLKKLSNDDCLSVFAQ 292 (1385)
Q Consensus 223 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v~---~~~~~~~~~~l~~L~~~~~~~lf~~ 292 (1385)
++|.+|.+|.|+.-+..+-+. ++|.-..|.-++| ||.++... ..+..-.++.+++|+.++...++.+
T Consensus 221 krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred cceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHH
Confidence 789999999996543333222 3455567776665 67666432 1223346899999999999888876
No 85
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=2.2e-05 Score=93.35 Aligned_cols=184 Identities=17% Similarity=0.164 Sum_probs=107.6
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccc-------------------ccCCcE
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQ-------------------DHFDLK 177 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~ 177 (1385)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++...-. ..|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 458899999999999885432 24567899999999999999998621100 011112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhH-cCCCeEEEEEecCCCCCccccccccCcccCCCCCcE
Q 035550 178 AWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKK-LSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSK 256 (1385)
Q Consensus 178 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 256 (1385)
+++........ .+..++.+.+... ..+++-++|+|++..-+...++.+...+......++
T Consensus 91 ieidaas~~gv-------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 91 IEIDAASRTGV-------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred EEeecccccCH-------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 22221111111 1122222222211 235667999999965555566667766665445566
Q ss_pred EEE-EccchhHhhhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCc-hHHHHHh
Q 035550 257 IIV-TARNQGVAAIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLP-LAAKTLG 328 (1385)
Q Consensus 257 ilv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~ 328 (1385)
+|+ ||....+...+ .....+++++++.++....+.+.+...+.... .+....|++.++|.+ -|+..+-
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e----~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSD----EQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 554 54433343332 22468999999999988877765432221111 244556889999866 4444443
No 86
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.09 E-value=3e-05 Score=89.20 Aligned_cols=180 Identities=13% Similarity=0.145 Sum_probs=101.6
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEe--CCCCCHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCV--SDDFDVIRLTKS 194 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~ 194 (1385)
.+++|+++.++.+..++... ..+.+.++|.+|+||||+|+.+++.. ....+. ..++.+ +...... ..++
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~-~~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALAREL-YGEDWR-ENFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHH-cCCccc-cceEEeccccccchH-HHHH
Confidence 45889999999999998543 23457999999999999999998742 111121 112222 2211111 1111
Q ss_pred HHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccch-hHhhhh-CC
Q 035550 195 ILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQ-GVAAIM-GT 272 (1385)
Q Consensus 195 i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~-~~ 272 (1385)
.+.++....+ .....+-++|+|++..-.....+.+...+......+++|+++... .+.... ..
T Consensus 88 ~i~~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr 152 (319)
T PRK00440 88 KIKEFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR 152 (319)
T ss_pred HHHHHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH
Confidence 1111111000 001235689999984433333444554444434456777766432 221111 12
Q ss_pred CCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHH
Q 035550 273 APAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAA 324 (1385)
Q Consensus 273 ~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 324 (1385)
...+++.+++.++....+.+.+........ .+....+++.++|.+--+
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~----~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGIEIT----DDALEAIYYVSEGDMRKA 200 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 346899999999998888877643322112 245666888999977553
No 87
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=3.6e-05 Score=90.98 Aligned_cols=192 Identities=18% Similarity=0.210 Sum_probs=109.6
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCc-EEEEEeCCCCCHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDL-KAWTCVSDDFDVIRLTKSI 195 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i 195 (1385)
.+++|-+..++.+...+.... -...+.++|+.|+||||+|+.+++...-...... ..+..+... .....+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHH
Confidence 457899999999888775432 2357889999999999999999873211110000 000000000 000011
Q ss_pred HH-------HhcCCCCCCccCHHHHHHHHHh----HcCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEE-Eccc
Q 035550 196 LL-------SIASDQIVDNHDLNKLQEELKK----KLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIV-TARN 263 (1385)
Q Consensus 196 ~~-------~~~~~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~ 263 (1385)
.. .+... .....+++.+.+.. -..+++-++|+|+++.-+...|+.+...+......+++|+ ||+.
T Consensus 92 ~~~~h~Dv~eidaa---s~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~ 168 (507)
T PRK06645 92 NNHNHPDIIEIDAA---SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEV 168 (507)
T ss_pred hcCCCCcEEEeecc---CCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCCh
Confidence 00 00000 11122333322221 1245677899999977666677777776665455566554 5554
Q ss_pred hhHhhhhC-CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHH
Q 035550 264 QGVAAIMG-TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAA 324 (1385)
Q Consensus 264 ~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 324 (1385)
..+...+. ....+++.+++.++....+.+.+........ .+....|++.++|.+--+
T Consensus 169 ~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie----~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 169 QKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD----IEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 45544332 2357899999999999999887643322111 244566888999876433
No 88
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.05 E-value=7.3e-06 Score=90.74 Aligned_cols=90 Identities=18% Similarity=0.200 Sum_probs=61.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCC--CHHHHHHHHHHHhcCCCCCCccCHH-----HHHH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF--DVIRLTKSILLSIASDQIVDNHDLN-----KLQE 215 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~ 215 (1385)
..+..+|+|++|+||||||+++|++.... +|+.++||.+.+.. ++.++++.+...+......+....+ ...+
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 34678899999999999999999965443 89999999999887 7788888887433322221111111 1111
Q ss_pred HHHhH-cCCCeEEEEEecC
Q 035550 216 ELKKK-LSPKKFLLVLDDV 233 (1385)
Q Consensus 216 ~l~~~-l~~~~~LlVlDdv 233 (1385)
.-+.. -.+++++|++|++
T Consensus 247 ~Ae~~~e~G~dVlL~iDsI 265 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSI 265 (416)
T ss_pred HHHHHHHcCCCEEEEEECh
Confidence 11111 3689999999999
No 89
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.04 E-value=1.7e-05 Score=98.02 Aligned_cols=168 Identities=24% Similarity=0.315 Sum_probs=93.1
Q ss_pred CeeeechhHHH---HHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHH
Q 035550 117 AKVYGRETEKK---EIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTK 193 (1385)
Q Consensus 117 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 193 (1385)
.+|+|.+..+. .+..++... ....+.++|++|+||||+|+.+++. ....|. .++... ...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~------~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i----- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD------RVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGV----- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhh-----
Confidence 45789888774 455555332 3456789999999999999999973 333331 111110 000
Q ss_pred HHHHHhcCCCCCCccCHHHHHHHHHhHc--CCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEE--ccchh--Hh
Q 035550 194 SILLSIASDQIVDNHDLNKLQEELKKKL--SPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVT--ARNQG--VA 267 (1385)
Q Consensus 194 ~i~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT--tR~~~--v~ 267 (1385)
.+..+..+...+.+ .+++.+||+||++.-+...++.+...+. .|..++++ |.+.. +.
T Consensus 91 --------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 91 --------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVN 153 (725)
T ss_pred --------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhh
Confidence 01111112222222 2467799999996544445555544332 35555553 44331 21
Q ss_pred hhh-CCCCcccCCCCChhhhHHHhhhhccC------cCCCCCchhHHHHHHHHHHhcCCCc
Q 035550 268 AIM-GTAPAYQLKKLSNDDCLSVFAQHSLG------TRDFSSNKSLEEIGKKIVIKCNGLP 321 (1385)
Q Consensus 268 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~------~~~~~~~~~~~~~~~~i~~~~~g~P 321 (1385)
... .....+++++++.++...++.+.+-. .....- -++....|++.+.|.-
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I---~deaL~~La~~s~GD~ 211 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDL---EPEAEKHLVDVANGDA 211 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCC---CHHHHHHHHHhCCCCH
Confidence 211 12357999999999999998876531 111111 1244566777887753
No 90
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=5e-06 Score=61.50 Aligned_cols=40 Identities=30% Similarity=0.451 Sum_probs=25.8
Q ss_pred CceeEEEEcCcccccccccccCCccccEEecccccccccc
Q 035550 530 QRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLP 569 (1385)
Q Consensus 530 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP 569 (1385)
++|++|++++|.|+.+|..|++|++|++|++++|+|+.+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3566777777777777666777777777777777666554
No 91
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=3.8e-05 Score=90.51 Aligned_cols=187 Identities=15% Similarity=0.186 Sum_probs=104.2
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccc--C-----------------CcE
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDH--F-----------------DLK 177 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~--f-----------------~~~ 177 (1385)
.++||.+..++.+...+.... -...+.++|++|+||||+|+.+++...-... + ..+
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 458999988888888775432 2356789999999999999999873211000 0 011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHh-HcCCCeEEEEEecCCCCCccccccccCcccCCCCCcE
Q 035550 178 AWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKK-KLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSK 256 (1385)
Q Consensus 178 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 256 (1385)
..+..+...... +..++.+.+.. ...+++-++|+|+++.-+....+.+...+........
T Consensus 89 ~el~aa~~~gid-------------------~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv 149 (472)
T PRK14962 89 IELDAASNRGID-------------------EIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVV 149 (472)
T ss_pred EEEeCcccCCHH-------------------HHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEE
Confidence 111111111111 11111111111 1235667999999954333344555555544333444
Q ss_pred EEEEccc-hhHhhhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCC-CchHHHHHhhhh
Q 035550 257 IIVTARN-QGVAAIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNG-LPLAAKTLGGLL 331 (1385)
Q Consensus 257 ilvTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~~~~l 331 (1385)
+|++|.+ ..+...+ .....+++.+++.++....+.+.+........ .+....|+++++| .+.|+..+..+.
T Consensus 150 ~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~----~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 150 FVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID----REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4444433 3343333 23357899999999998888877643221112 2455668887765 567777665543
No 92
>PRK08727 hypothetical protein; Validated
Probab=98.00 E-value=4.3e-05 Score=82.12 Aligned_cols=148 Identities=16% Similarity=0.106 Sum_probs=85.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPK 224 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 224 (1385)
..+.|+|..|+|||+||+++++. .......+.++++.+ ....+ .+.+. .+ .+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~------------------~~~~~-~l-~~ 93 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRL------------------RDALE-AL-EG 93 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhH------------------HHHHH-HH-hc
Confidence 45999999999999999999874 333333556665322 11111 11111 11 12
Q ss_pred eEEEEEecCCCCCc-ccccc-ccCcccC-CCCCcEEEEEccch---------hHhhhhCCCCcccCCCCChhhhHHHhhh
Q 035550 225 KFLLVLDDVWNENY-NDWDR-LRPPFEA-GAPGSKIIVTARNQ---------GVAAIMGTAPAYQLKKLSNDDCLSVFAQ 292 (1385)
Q Consensus 225 ~~LlVlDdv~~~~~-~~~~~-l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 292 (1385)
.-+||+||+..... ..|+. +...+.. ...|..||+|++.. ++...+.....+++++++.++-.+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 34899999943211 12322 2222211 12466799999853 2223333456889999999999999998
Q ss_pred hccCcCCCCCchhHHHHHHHHHHhcCCCchHH
Q 035550 293 HSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAA 324 (1385)
Q Consensus 293 ~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 324 (1385)
++....-..+ ++...-|+++++|-.-++
T Consensus 174 ~a~~~~l~l~----~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 174 RAQRRGLALD----EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHcCCCCC----HHHHHHHHHhCCCCHHHH
Confidence 7653322111 245556777777655444
No 93
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=6.6e-05 Score=90.04 Aligned_cols=192 Identities=15% Similarity=0.153 Sum_probs=104.6
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-.... -+..+... ...+.+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~---~~~pCg~C----~sCr~i~ 83 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQ---HGEPCGVC----QSCTQID 83 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCC---CCCCCccc----HHHHHHh
Confidence 468999999999999986432 24578899999999999999987731111000 00000000 0000000
Q ss_pred HH-----hcCCCCCCccCHHHHHHHHHh----HcCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccch-hH
Q 035550 197 LS-----IASDQIVDNHDLNKLQEELKK----KLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQ-GV 266 (1385)
Q Consensus 197 ~~-----~~~~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v 266 (1385)
.. +..... .....+.+.+.+.. -..+++-++|+|++..-+......+...+......+++|++|.+. .+
T Consensus 84 ~g~~~DvlEidaA-s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL 162 (709)
T PRK08691 84 AGRYVDLLEIDAA-SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKV 162 (709)
T ss_pred ccCccceEEEecc-ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 00 000000 11122222222221 123566689999995444334445555554433456677666543 22
Q ss_pred hhhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHH
Q 035550 267 AAIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAK 325 (1385)
Q Consensus 267 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 325 (1385)
...+ +....+++.+++.++....+.+.+-....... .+....|++.++|.+.-+.
T Consensus 163 ~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id----~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 163 PVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE----PPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred chHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHhCCCHHHHH
Confidence 2221 22246888999999998888876543322111 2456679999999874443
No 94
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=4.2e-05 Score=92.33 Aligned_cols=194 Identities=14% Similarity=0.148 Sum_probs=108.4
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.++||-+..++.|...+.... -...+.++|..|+||||+|+.+++...-...+. ......-...+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHH
Confidence 468999999999999885432 235578999999999999999987321110000 00111111111111
Q ss_pred HH-------hcCCCCCCccCHHHHHHHHHh-HcCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccc-hhHh
Q 035550 197 LS-------IASDQIVDNHDLNKLQEELKK-KLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARN-QGVA 267 (1385)
Q Consensus 197 ~~-------~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~ 267 (1385)
.. +.........+..++.+.+.. -..+++-++|+|+++.-+....+.+...+.......++|++|.+ ..+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 00 000000011112222222221 12466779999999666556666676666554455666555544 3343
Q ss_pred hhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHH
Q 035550 268 AIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKT 326 (1385)
Q Consensus 268 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 326 (1385)
..+ .....|.+++++.++....+.+.+-....... .+....|++.++|.+-.+..
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e----~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE----PRALQLLARAADGSMRDALS 219 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 222 22368999999999999888775422211111 24456699999997764443
No 95
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=3.6e-05 Score=91.34 Aligned_cols=197 Identities=17% Similarity=0.198 Sum_probs=106.8
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.+++|++..++.+..++.... -.+.+.++|+.|+||||+|+.+++... +.-|... .....-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~~~~-~~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNPKDG-DCCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhc------CCCCCCC-CCCcccHHHHHHH
Confidence 468899999999999885432 235788999999999999999986321 1112110 0111111111111
Q ss_pred HHhcCC----CCCCccCHHH---HHHHHHhH-cCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEc-cchhHh
Q 035550 197 LSIASD----QIVDNHDLNK---LQEELKKK-LSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTA-RNQGVA 267 (1385)
Q Consensus 197 ~~~~~~----~~~~~~~~~~---~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~ 267 (1385)
...... ........++ +.+.+... ..+++-++|+|++..-+...+..+...+........+|++| ....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 110000 0000111222 22222111 12334469999996544455666666665444455655555 433343
Q ss_pred hhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCch-HHHHHhh
Q 035550 268 AIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPL-AAKTLGG 329 (1385)
Q Consensus 268 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~ 329 (1385)
..+ .....+++.+++.++....+...+...+...+ .+.+..+++.++|.+- |+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is----~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE----DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 222 23468999999999998888876533221111 2456678999999654 4444443
No 96
>PRK09087 hypothetical protein; Validated
Probab=97.96 E-value=7.7e-05 Score=79.30 Aligned_cols=141 Identities=14% Similarity=0.126 Sum_probs=84.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSP 223 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 223 (1385)
.+.+.|+|..|+|||+|++.++.... +.+++.. .+..+++. .+.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~----------------------~~~~ 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAAN----------------------AAAE 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHH----------------------hhhc
Confidence 36789999999999999998886321 1233221 11111111 1111
Q ss_pred CeEEEEEecCCCCCccccccccCcccC-CCCCcEEEEEccc---------hhHhhhhCCCCcccCCCCChhhhHHHhhhh
Q 035550 224 KKFLLVLDDVWNENYNDWDRLRPPFEA-GAPGSKIIVTARN---------QGVAAIMGTAPAYQLKKLSNDDCLSVFAQH 293 (1385)
Q Consensus 224 ~~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 293 (1385)
-+|++||+..... +-+.+...+.. ...|..||+|++. ++....+....++++++++.++-.+++.++
T Consensus 89 --~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 --GPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred --CeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 2788899943211 11222222211 1246679998873 334455556678999999999999999988
Q ss_pred ccCcCCCCCchhHHHHHHHHHHhcCCCchHHHH
Q 035550 294 SLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKT 326 (1385)
Q Consensus 294 a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 326 (1385)
+....- .-+ +++..-|++++.|..-++..
T Consensus 166 ~~~~~~-~l~---~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 166 FADRQL-YVD---PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHcCC-CCC---HHHHHHHHHHhhhhHHHHHH
Confidence 743221 111 35666788888887766664
No 97
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=7e-05 Score=87.67 Aligned_cols=180 Identities=17% Similarity=0.171 Sum_probs=105.9
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccc-------------------ccCCcE
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQ-------------------DHFDLK 177 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~ 177 (1385)
.++||.+..++.+..++.... -...+.++|+.|+||||+|+.+++...-. ..+.-+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 468999999998888875432 23478899999999999999887521000 011112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccccccccCcccCCCCCcEE
Q 035550 178 AWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKI 257 (1385)
Q Consensus 178 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 257 (1385)
+.++.+....+.+ .+++++..... -..+++-++|+|++..-+....+.+...+......+++
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~~-----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~f 149 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCYL-----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKF 149 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHhc-----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEE
Confidence 2333222222111 11122111100 01245668999999655545566666666555556666
Q ss_pred EEEcc-chhHhhhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchH
Q 035550 258 IVTAR-NQGVAAIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLA 323 (1385)
Q Consensus 258 lvTtR-~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 323 (1385)
|++|. ...+...+ .....+++.+++.++....+.+.+.......+ .+....|++.++|.+-.
T Consensus 150 Ilatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~----~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 150 ILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD----EESLKLIAENSSGSMRN 213 (491)
T ss_pred EEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 66553 34444333 23467899999999999888877643322112 24456689999887653
No 98
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.95 E-value=0.00011 Score=85.94 Aligned_cols=182 Identities=16% Similarity=0.184 Sum_probs=105.2
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccc--------------------ccCCc
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQ--------------------DHFDL 176 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~--------------------~~f~~ 176 (1385)
.+++|.++.++.+..++.... -...+.++|++|+||||+|+.+.+...-. .+++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 357899999999999985432 23577899999999999998887631100 01221
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhH-cCCCeEEEEEecCCCCCccccccccCcccCCCCCc
Q 035550 177 KAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKK-LSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGS 255 (1385)
Q Consensus 177 ~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 255 (1385)
+++......+. + +..++.+.+... ..+++-++|+|++..-.......+...+......+
T Consensus 89 -~~~~~~~~~~~-~------------------~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~ 148 (355)
T TIGR02397 89 -IEIDAASNNGV-D------------------DIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHV 148 (355)
T ss_pred -EEeeccccCCH-H------------------HHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccce
Confidence 22221111111 1 111222221111 22455588999984333344555555554444556
Q ss_pred EEEEEccchh-Hhhhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHH
Q 035550 256 KIIVTARNQG-VAAIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 327 (1385)
Q Consensus 256 ~ilvTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 327 (1385)
.+|++|.+.. +...+ .....+++.+++.++..+.+...+-..+...+ .+.+..+++.++|.|..+...
T Consensus 149 ~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~----~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 149 VFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE----DEALELIARAADGSLRDALSL 218 (355)
T ss_pred eEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCChHHHHHH
Confidence 6666665443 22222 22357888999999988888876533221111 256677899999988655443
No 99
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.95 E-value=0.00012 Score=76.27 Aligned_cols=91 Identities=18% Similarity=0.258 Sum_probs=61.5
Q ss_pred CCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccch-hHhhhh-CCCCcccCCCCChhhhHHHhhhhccCcCCC
Q 035550 223 PKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQ-GVAAIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDF 300 (1385)
Q Consensus 223 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 300 (1385)
+.+-++|+||+..-+...++.+...+......+.+|++|++. .+...+ .....+++.+++.++..+.+.+. +
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C----
Confidence 556689999995544455666666665545566777777654 222222 22358999999999998888776 1
Q ss_pred CCchhHHHHHHHHHHhcCCCchH
Q 035550 301 SSNKSLEEIGKKIVIKCNGLPLA 323 (1385)
Q Consensus 301 ~~~~~~~~~~~~i~~~~~g~PLa 323 (1385)
.. .+.+..|++.++|.|..
T Consensus 169 i~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 IS----EEAAELLLALAGGSPGA 187 (188)
T ss_pred CC----HHHHHHHHHHcCCCccc
Confidence 11 25577899999998853
No 100
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=8.8e-05 Score=89.51 Aligned_cols=193 Identities=13% Similarity=0.178 Sum_probs=107.2
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccc--CCcEEEEEeCCCCCHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDH--FDLKAWTCVSDDFDVIRLTKS 194 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~ 194 (1385)
.++||-+..++.|..++.... -...+.++|..|+||||+|+.+++...-... .....+ ...+.-..-+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 458899999999999886542 2467789999999999999998652110000 000000 00011111111
Q ss_pred HHH-------HhcCCCCCCccCHHHHHHHHHhH----cCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEc-c
Q 035550 195 ILL-------SIASDQIVDNHDLNKLQEELKKK----LSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTA-R 262 (1385)
Q Consensus 195 i~~-------~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R 262 (1385)
|.. .+... .....+++.+.+... ..++.-++|||+|+.-+...++.+...+.......++|++| .
T Consensus 87 i~~g~h~D~~eldaa---s~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd 163 (618)
T PRK14951 87 IDSGRFVDYTELDAA---SNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTD 163 (618)
T ss_pred HHcCCCCceeecCcc---cccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECC
Confidence 100 00000 112223333222211 12445589999997666666777776665544556666555 4
Q ss_pred chhHhhhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHH
Q 035550 263 NQGVAAIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAK 325 (1385)
Q Consensus 263 ~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 325 (1385)
...+...+ .....+++++++.++..+.+.+.+...+.... .+....|++.++|.+--+.
T Consensus 164 ~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie----~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 164 PQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE----PQALRLLARAARGSMRDAL 223 (618)
T ss_pred chhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 33333322 23468999999999998888876533221111 2455668889998774443
No 101
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=8.6e-05 Score=88.64 Aligned_cols=178 Identities=13% Similarity=0.112 Sum_probs=104.1
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccc-------------------CCcE
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDH-------------------FDLK 177 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 177 (1385)
.++||-+..++.|..++.... -...+.++|+.|+||||+|+.+++..--... |.-+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 468999999999999995542 2346789999999999999998873211111 1111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHh----HcCCCeEEEEEecCCCCCccccccccCcccCCCC
Q 035550 178 AWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKK----KLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAP 253 (1385)
Q Consensus 178 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 253 (1385)
+.+..... ...+++.+.+.. -..++.-++|+|+|+.-+......+...+.....
T Consensus 91 ~eidaas~----------------------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~ 148 (509)
T PRK14958 91 FEVDAASR----------------------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPS 148 (509)
T ss_pred EEEccccc----------------------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCC
Confidence 22221111 122222222111 1135566899999966555566666666655445
Q ss_pred CcEEEEEccc-hhHhhhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHH
Q 035550 254 GSKIIVTARN-QGVAAIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAK 325 (1385)
Q Consensus 254 gs~ilvTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 325 (1385)
.+++|++|.+ ..+...+ .....+++++++.++....+.+.+-..+.... .+....|++.++|.+--+.
T Consensus 149 ~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~----~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 149 HVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE----NAALDLLARAANGSVRDAL 218 (509)
T ss_pred CeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHH
Confidence 6666665543 3333222 22357889999999887766655432221111 2345568888988775443
No 102
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.92 E-value=0.00021 Score=79.39 Aligned_cols=214 Identities=17% Similarity=0.162 Sum_probs=132.5
Q ss_pred cCCeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHH
Q 035550 115 NEAKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKS 194 (1385)
Q Consensus 115 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 194 (1385)
.+..++||+.|++.+..++...- ......-+.|.|-+|.|||.+...++.+..-...=..++.+.+..-....+++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hl--e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHL--ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhh--hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 35678999999999999986543 2234567889999999999999999986432221124567777665678888888
Q ss_pred HHHHhcCCCCCCccCHHHHHHHHHhHcCC--CeEEEEEecCCCCCccccccccCcccCC-CCCcEEEEEccchh------
Q 035550 195 ILLSIASDQIVDNHDLNKLQEELKKKLSP--KKFLLVLDDVWNENYNDWDRLRPPFEAG-APGSKIIVTARNQG------ 265 (1385)
Q Consensus 195 i~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~------ 265 (1385)
|...+.......... .+..+.+.++... ..+|+|+|.+..-....-+.+...|.|. -+++|+|+.--...
T Consensus 226 I~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 888874332212222 4455566666543 3689999998321112223344444332 35677665332111
Q ss_pred Hhhhh-----CCCCcccCCCCChhhhHHHhhhhccCcCC-CCCchhHHHHHHHHHHhcCCCchHHHHHhhhh
Q 035550 266 VAAIM-----GTAPAYQLKKLSNDDCLSVFAQHSLGTRD-FSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLL 331 (1385)
Q Consensus 266 v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~-~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 331 (1385)
..... .....+..+|-+.++..+++..+.-.... ...+..++-.|++++...|-+--|+.+.-+++
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 11111 12346778899999999999988643222 12234556666777666677777777666555
No 103
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.91 E-value=7e-05 Score=80.64 Aligned_cols=152 Identities=12% Similarity=0.162 Sum_probs=87.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSP 223 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 223 (1385)
.+.+.|+|+.|+|||+||+.+++. ....-..+.++.+..... ...++.+.+.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~---------------------~~~~~~~~~~~---- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW---------------------FVPEVLEGMEQ---- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh---------------------hhHHHHHHhhh----
Confidence 357889999999999999999873 222223455655532100 00111111211
Q ss_pred CeEEEEEecCCCCCc-ccccc-ccCcccCC-CCC-cEEEEEccch---------hHhhhhCCCCcccCCCCChhhhHHHh
Q 035550 224 KKFLLVLDDVWNENY-NDWDR-LRPPFEAG-APG-SKIIVTARNQ---------GVAAIMGTAPAYQLKKLSNDDCLSVF 290 (1385)
Q Consensus 224 ~~~LlVlDdv~~~~~-~~~~~-l~~~l~~~-~~g-s~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 290 (1385)
--+|++||+..-.. ..|+. +...+... ..| .++|+||+.. +..+.+....+++++++++++-.+++
T Consensus 98 -~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l 176 (235)
T PRK08084 98 -LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQAL 176 (235)
T ss_pred -CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHH
Confidence 13789999944221 23442 22222211 123 4799999754 33444555678999999999999998
Q ss_pred hhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHH
Q 035550 291 AQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 327 (1385)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 327 (1385)
.+++....- .-+ +++..-|++++.|..-++..+
T Consensus 177 ~~~a~~~~~-~l~---~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 177 QLRARLRGF-ELP---EDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHHHcCC-CCC---HHHHHHHHHhhcCCHHHHHHH
Confidence 876643221 111 356666888887765544433
No 104
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=0.00012 Score=83.38 Aligned_cols=196 Identities=13% Similarity=0.124 Sum_probs=110.7
Q ss_pred CCeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEE------EEEeCCCCCHH
Q 035550 116 EAKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKA------WTCVSDDFDVI 189 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~------wv~~~~~~~~~ 189 (1385)
..+++|.++.++.+.+.+.... -...+.++|+.|+||+|+|..+++..--+....... -..+....
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c--- 89 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH--- 89 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---
Confidence 3568999999999999986542 245688999999999999988876211000000000 00000000
Q ss_pred HHHHHHHHHh-------cCC--CC----CCccCHHHHHHHHHhHc-----CCCeEEEEEecCCCCCccccccccCcccCC
Q 035550 190 RLTKSILLSI-------ASD--QI----VDNHDLNKLQEELKKKL-----SPKKFLLVLDDVWNENYNDWDRLRPPFEAG 251 (1385)
Q Consensus 190 ~~~~~i~~~~-------~~~--~~----~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~ 251 (1385)
..-+.+...- ... .. ...-.++++. .+.+.+ .+++-++|+||+..-+......+...+...
T Consensus 90 ~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep 168 (365)
T PRK07471 90 PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP 168 (365)
T ss_pred hHHHHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC
Confidence 0111111000 000 00 0111233322 233333 256679999999666656666666666554
Q ss_pred CCCcEEEEEccch-hHhhhhC-CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHHh
Q 035550 252 APGSKIIVTARNQ-GVAAIMG-TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLG 328 (1385)
Q Consensus 252 ~~gs~ilvTtR~~-~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 328 (1385)
..++.+|++|.+. .+...+. ....+.+.+++.++..+++...... ..+ +....+++.++|.|..+..+.
T Consensus 169 p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~~~---~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 169 PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----LPD---DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----CCH---HHHHHHHHHcCCCHHHHHHHh
Confidence 4566677777665 3333322 2358999999999999999876311 111 122568999999998665553
No 105
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.90 E-value=0.00012 Score=84.16 Aligned_cols=194 Identities=14% Similarity=0.124 Sum_probs=104.9
Q ss_pred CeeeechhHHHHHHHHHhcCCc----CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDL----RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLT 192 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~----~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 192 (1385)
.+++|-+..++.|..++..... .+..-...+.++|+.|+||||+|+.++....-... . +..+..- ..-
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~--~--~~~Cg~C----~~C 76 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDP--D--EPGCGEC----RAC 76 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCC--C--CCCCCCC----HHH
Confidence 3578999999999999965421 00112456889999999999999998752100000 0 0000000 000
Q ss_pred HHHHHHhcC-----CCCCCccCHHHHH---HHHHh-HcCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccc
Q 035550 193 KSILLSIAS-----DQIVDNHDLNKLQ---EELKK-KLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARN 263 (1385)
Q Consensus 193 ~~i~~~~~~-----~~~~~~~~~~~~~---~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 263 (1385)
+.+...-.. .........+++. +.+.. -..+++-++|+|++..-+......+...+.....+..+|++|.+
T Consensus 77 ~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECC
Confidence 000000000 0000111222222 22211 11345568888999555444445555555544456666666555
Q ss_pred h-hHhhhhC-CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHH
Q 035550 264 Q-GVAAIMG-TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 327 (1385)
Q Consensus 264 ~-~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 327 (1385)
. .+...+. ....+.+.+++.++..+.+.+.. + .. .+.+..+++.++|.|.....+
T Consensus 157 ~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~----~~----~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 157 PEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G----VD----PETARRAARASQGHIGRARRL 213 (394)
T ss_pred hHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C----CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 3 4443332 23589999999999998887432 1 11 244677899999999765544
No 106
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=6.2e-05 Score=85.32 Aligned_cols=198 Identities=14% Similarity=0.156 Sum_probs=112.2
Q ss_pred CCeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccc--ccCCcEEEEEeCCCCCHHHHHH
Q 035550 116 EAKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQ--DHFDLKAWTCVSDDFDVIRLTK 193 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~ 193 (1385)
...++|.++..+.+...+.... ....+.|+|+.|+||||+|+.+++..--. ..+.... ...........+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHH
Confidence 4568999999999999995442 34578899999999999999887632110 0011110 000111111222
Q ss_pred HHHHH-------hcCCC-C-----CCccCHHHHHHHHHhHc-----CCCeEEEEEecCCCCCccccccccCcccCCCCCc
Q 035550 194 SILLS-------IASDQ-I-----VDNHDLNKLQEELKKKL-----SPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGS 255 (1385)
Q Consensus 194 ~i~~~-------~~~~~-~-----~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 255 (1385)
.+... +.... . ...-..+++. .+.+.+ .+++-++|+|++..-+....+.+...+.....+.
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 22211 10000 0 0111233332 333333 3566799999996655555566665555433444
Q ss_pred EE-EEEccchhHhhhhC-CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHHh
Q 035550 256 KI-IVTARNQGVAAIMG-TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLG 328 (1385)
Q Consensus 256 ~i-lvTtR~~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 328 (1385)
.+ ++|++...+...+. ....+++.+++.++..+++.+.+... . . -.+....|++.++|.|.....+.
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~-~--~---~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ-G--S---DGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc-C--C---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 54 44544433433332 23589999999999999998743211 1 1 12345679999999998665543
No 107
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00016 Score=87.02 Aligned_cols=180 Identities=15% Similarity=0.159 Sum_probs=103.6
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccc-------------------cCCcE
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQD-------------------HFDLK 177 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 177 (1385)
.+++|-+..++.+..++.... -...+.++|+.|+||||+|+.+++...-.. .|.-.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468899999999999986532 235677999999999999999976321100 01111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHh----HcCCCeEEEEEecCCCCCccccccccCcccCCCC
Q 035550 178 AWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKK----KLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAP 253 (1385)
Q Consensus 178 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 253 (1385)
+++..+. ....+++.+.+.. -..+++-++|+|++..-+......+...+.....
T Consensus 91 ~ei~~~~----------------------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~ 148 (527)
T PRK14969 91 IEVDAAS----------------------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPE 148 (527)
T ss_pred eEeeccc----------------------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCC
Confidence 1221111 1122222221111 1135667999999955444445556655554444
Q ss_pred CcEEEEEccc-hhHhhhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCch-HHHHH
Q 035550 254 GSKIIVTARN-QGVAAIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPL-AAKTL 327 (1385)
Q Consensus 254 gs~ilvTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 327 (1385)
.+.+|++|.+ ..+...+ .....+++++++.++....+.+.+...+... -.+....|++.++|.+- |+..+
T Consensus 149 ~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~----~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 149 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF----DATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 5666655544 3332221 1125789999999999888876553222111 12445668899999774 44443
No 108
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.85 E-value=7.8e-05 Score=80.49 Aligned_cols=152 Identities=18% Similarity=0.149 Sum_probs=84.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSP 223 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 223 (1385)
.+.+.|+|..|+|||+||+.+++... ... ..+.+++..... .. + ... .
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~------~~----~-------------------~~~-~ 89 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPL------LA----F-------------------DFD-P 89 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhH------HH----H-------------------hhc-c
Confidence 45788999999999999999987421 112 234444433211 00 0 011 1
Q ss_pred CeEEEEEecCCCCCccccccccCcccCC-CCCc-EEEEEccchhHhh--------hhCCCCcccCCCCChhhhHHHhhhh
Q 035550 224 KKFLLVLDDVWNENYNDWDRLRPPFEAG-APGS-KIIVTARNQGVAA--------IMGTAPAYQLKKLSNDDCLSVFAQH 293 (1385)
Q Consensus 224 ~~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~ilvTtR~~~v~~--------~~~~~~~~~l~~L~~~~~~~lf~~~ 293 (1385)
..-+||+||+..-+...-+.+...+... ..+. .||+|++...... .+.....++++++++++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 2337889999432222222233333221 2333 4667766432211 2222367899999998877777654
Q ss_pred ccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHHhhhh
Q 035550 294 SLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLL 331 (1385)
Q Consensus 294 a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 331 (1385)
+-.... .-+ ++....+++.+.|.+..+..+...+
T Consensus 170 ~~~~~v-~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERGL-QLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcCC-CCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 322111 111 3566668888999998877666554
No 109
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.84 E-value=0.00017 Score=77.38 Aligned_cols=204 Identities=17% Similarity=0.162 Sum_probs=116.8
Q ss_pred Ceeeec---hhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccc----cCCcEEEEEeCCCCCHH
Q 035550 117 AKVYGR---ETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQD----HFDLKAWTCVSDDFDVI 189 (1385)
Q Consensus 117 ~~~vGr---~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~ 189 (1385)
+.+||- .+.++++.+++..+ .....+-+.|||.+|+|||++++++.+..-... .--.++.|.+....+..
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P---~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYP---KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCC---cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 345554 34455555555444 234556789999999999999999986321111 11246777888889999
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCC-CeEEEEEecCCCC---Cccccccc---cCcccCCCCCcEEEEEcc
Q 035550 190 RLTKSILLSIASDQIVDNHDLNKLQEELKKKLSP-KKFLLVLDDVWNE---NYNDWDRL---RPPFEAGAPGSKIIVTAR 262 (1385)
Q Consensus 190 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~---~~~~~~~l---~~~l~~~~~gs~ilvTtR 262 (1385)
.++..|+.+++.... .......+...+...++. +-=+||+|.+++- ...+-..+ ...+...-.=+-|.|-|+
T Consensus 111 ~~Y~~IL~~lgaP~~-~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 111 RFYSAILEALGAPYR-PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHhCcccC-CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 999999999998765 344555555555555543 3348899999552 11111111 222222233455677776
Q ss_pred chhHhhhhC-----CCCcccCCCCChh-hhHHHhhhhc--cCcCCCCCchhHHHHHHHHHHhcCCCchHHH
Q 035550 263 NQGVAAIMG-----TAPAYQLKKLSND-DCLSVFAQHS--LGTRDFSSNKSLEEIGKKIVIKCNGLPLAAK 325 (1385)
Q Consensus 263 ~~~v~~~~~-----~~~~~~l~~L~~~-~~~~lf~~~a--~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 325 (1385)
+.--+-..+ ....+.++....+ +...|+.... .+-... ..-...++++.|.+.++|+.=-+.
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~-S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKP-SNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHHHHcCCchHHHH
Confidence 543222111 1235566665543 4444543321 121221 122346789999999999864433
No 110
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=9.2e-05 Score=86.59 Aligned_cols=201 Identities=13% Similarity=0.153 Sum_probs=107.7
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEE-eCCCCCHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTC-VSDDFDVIRLTKSI 195 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 195 (1385)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++...-........|.. ...+...-..-+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 468899999999988885432 234577999999999999999886321111111011110 00000000111111
Q ss_pred HHHhcCC----CCCCccCHHHHHHHHHhHc-----CCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEc-cchh
Q 035550 196 LLSIASD----QIVDNHDLNKLQEELKKKL-----SPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTA-RNQG 265 (1385)
Q Consensus 196 ~~~~~~~----~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~ 265 (1385)
....... ........+++.+. .+.+ .+.+-++|+|++..-+...++.+...+......+.+|++| +...
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l-~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLL-RENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHH-HHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 1000000 00011113333322 2222 3456688999995544456777776666555566666555 4334
Q ss_pred HhhhhC-CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCch-HHHHH
Q 035550 266 VAAIMG-TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPL-AAKTL 327 (1385)
Q Consensus 266 v~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 327 (1385)
+...+. ....+++.+++.++..+.+...+-....... .+.+..|++.++|.+- |+..+
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~----~~al~~l~~~s~g~lr~a~~~L 229 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD----ADALQLIGRKAQGSMRDAQSIL 229 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 433221 1247899999999988888776532211111 3566779999999775 44433
No 111
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.00016 Score=87.63 Aligned_cols=197 Identities=13% Similarity=0.164 Sum_probs=108.1
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCC--cEEEEEeCCCCCHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFD--LKAWTCVSDDFDVIRLTKS 194 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~ 194 (1385)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++...-..... ...+..+.. -..-+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~----c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV----GEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc----cHHHHH
Confidence 468999999999999986442 235688999999999999999987321111100 000000000 001111
Q ss_pred HHHHhcCC----CCCCccCHHHHHH---HHHhH-cCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEc-cchh
Q 035550 195 ILLSIASD----QIVDNHDLNKLQE---ELKKK-LSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTA-RNQG 265 (1385)
Q Consensus 195 i~~~~~~~----~~~~~~~~~~~~~---~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~ 265 (1385)
|...-..+ ........+++.+ .++.. ..+++-++|+|++..-+....+.+...+.....++++|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 11100000 0001122333322 22111 12445579999995544445566666665544556665544 4444
Q ss_pred HhhhhC-CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHH
Q 035550 266 VAAIMG-TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKT 326 (1385)
Q Consensus 266 v~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 326 (1385)
+...+. ....+++.+++.++....+.+.+-....... .+....|++.++|.+.-+..
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~----~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE----DEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 433332 2357899999999999888876533221111 24566789999998765543
No 112
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.81 E-value=7.7e-05 Score=84.92 Aligned_cols=109 Identities=14% Similarity=0.141 Sum_probs=72.2
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.++++.++.++.+...|... +.|.++|++|+|||++|+.+++.......|+.+.||.+++.++..++....-
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 45788999999999998643 4677899999999999999988544445678889999999888766654331
Q ss_pred HHhcCCCCCCcc-CHHHHHHHHHhHc--CCCeEEEEEecCCCCCc
Q 035550 197 LSIASDQIVDNH-DLNKLQEELKKKL--SPKKFLLVLDDVWNENY 238 (1385)
Q Consensus 197 ~~~~~~~~~~~~-~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~~ 238 (1385)
.... ... ......+.+.+.. .++++++|+|++...+.
T Consensus 247 ----P~~v-gy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani 286 (459)
T PRK11331 247 ----PNGV-GFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL 286 (459)
T ss_pred ----CCCC-CeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH
Confidence 1100 000 0011122222222 24789999999955543
No 113
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.81 E-value=3.5e-05 Score=86.03 Aligned_cols=90 Identities=17% Similarity=0.181 Sum_probs=62.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCC--CCHHHHHHHHHHHhcCCCCCCccCH-----HHHHH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD--FDVIRLTKSILLSIASDQIVDNHDL-----NKLQE 215 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~ 215 (1385)
....++|+|++|+|||||++.+++.... ++|+..+||.+.+. .++.++++.+...+........... ..+.+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 3467999999999999999999986433 37999999999866 7899999999655544333111111 11112
Q ss_pred HHHhH-cCCCeEEEEEecC
Q 035550 216 ELKKK-LSPKKFLLVLDDV 233 (1385)
Q Consensus 216 ~l~~~-l~~~~~LlVlDdv 233 (1385)
..+.. -++++++|++|++
T Consensus 246 ~Ae~~~~~GkdVVLlIDEi 264 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSI 264 (415)
T ss_pred HHHHHHHcCCCeEEEEECh
Confidence 22222 3589999999999
No 114
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00022 Score=85.36 Aligned_cols=199 Identities=14% Similarity=0.171 Sum_probs=109.2
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.+++|-+..++.|..++.... -...+.++|+.|+||||+|+.+++...-....+. ..++.-...+.+.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHh
Confidence 457899888888888885432 2457788999999999999999874211110000 0001101111111
Q ss_pred HHhcCC----CCCCccCHHH---HHHHHHh-HcCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccc-hhHh
Q 035550 197 LSIASD----QIVDNHDLNK---LQEELKK-KLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARN-QGVA 267 (1385)
Q Consensus 197 ~~~~~~----~~~~~~~~~~---~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~ 267 (1385)
...... .......+++ +.+.+.. -..+++-++|+|++..-+...++.+...+........+|++|.. ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 100000 0000111222 2222211 12356679999999555445566666666543344556655544 4443
Q ss_pred hhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCc-hHHHHHhhhh
Q 035550 268 AIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLP-LAAKTLGGLL 331 (1385)
Q Consensus 268 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~~l 331 (1385)
..+ .....+++++++.++....+...+........ .+.+..|++.++|.+ -|+..+..++
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id----~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD----PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 332 22357899999999999888876543221111 245667888999854 6777766544
No 115
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.76 E-value=0.00048 Score=71.60 Aligned_cols=192 Identities=15% Similarity=0.168 Sum_probs=102.3
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.+|||.++-++++.=.+..... .+..+--|.++|++|.||||||.-+++. ....+. ++......-..-+..++
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeE----ecccccccChhhHHHHH
Confidence 5799999999998777765443 4456778999999999999999999983 332221 22111112222223333
Q ss_pred HHhcCCCCCCccCHHHHHH----HHHhHcCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchhHhhhhCC
Q 035550 197 LSIASDQIVDNHDLNKLQE----ELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQGVAAIMGT 272 (1385)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~----~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~ 272 (1385)
..+...+..-.++++.+.. .+.-.+.+-+.=|++.-- ..-..+.-.++++ +-|=.|||...+......
T Consensus 99 t~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~g-----p~Arsv~ldLppF---TLIGATTr~G~lt~PLrd 170 (332)
T COG2255 99 TNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKG-----PAARSIRLDLPPF---TLIGATTRAGMLTNPLRD 170 (332)
T ss_pred hcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccC-----CccceEeccCCCe---eEeeeccccccccchhHH
Confidence 3332222111111111111 122222232222222221 1111222223222 234468987655443322
Q ss_pred --CCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHH
Q 035550 273 --APAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 327 (1385)
Q Consensus 273 --~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 327 (1385)
.-+.+++.-+.+|-.+...+.|..-.... -++.+.+|+++..|-|--+.-+
T Consensus 171 RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i----~~~~a~eIA~rSRGTPRIAnRL 223 (332)
T COG2255 171 RFGIIQRLEFYTVEELEEIVKRSAKILGIEI----DEEAALEIARRSRGTPRIANRL 223 (332)
T ss_pred hcCCeeeeecCCHHHHHHHHHHHHHHhCCCC----ChHHHHHHHHhccCCcHHHHHH
Confidence 23567888888998888888773222111 2356778999999999644333
No 116
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.76 E-value=8e-06 Score=96.84 Aligned_cols=102 Identities=25% Similarity=0.345 Sum_probs=78.0
Q ss_pred cccccCCceeEEEEcCcccccccccccCCccccEEecccccccccchhhhccCCccEEecCCCcchhhhhhcccccCCCC
Q 035550 524 PKLFKLQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLH 603 (1385)
Q Consensus 524 ~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 603 (1385)
..+..++.|.+|++.+|.|+.+...+..+.+|++|+|++|.|+.+. .+..|..|+.|++++| .+..+ ..+..+++|+
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N-~i~~~-~~~~~l~~L~ 165 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN-LISDI-SGLESLKSLK 165 (414)
T ss_pred cccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccC-cchhc-cCCccchhhh
Confidence 4467888999999999999988766888999999999999998884 5778888999999987 55555 3466688999
Q ss_pred eeecCCCCCcccccCC-CCcccccccc
Q 035550 604 HLDNLDTGSLEEMPLG-IGKLTCLQTL 629 (1385)
Q Consensus 604 ~L~l~~~~~~~~lp~~-i~~L~~L~~L 629 (1385)
.+++++| .+..+... ...+.+|+.+
T Consensus 166 ~l~l~~n-~i~~ie~~~~~~~~~l~~l 191 (414)
T KOG0531|consen 166 LLDLSYN-RIVDIENDELSELISLEEL 191 (414)
T ss_pred cccCCcc-hhhhhhhhhhhhccchHHH
Confidence 9999888 55555543 3455555544
No 117
>PRK05642 DNA replication initiation factor; Validated
Probab=97.75 E-value=0.00017 Score=77.59 Aligned_cols=152 Identities=21% Similarity=0.279 Sum_probs=88.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSP 223 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 223 (1385)
...+.|+|..|+|||.||+.+++. ....-..++|++..+ +... . ..+.+.+++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~---------------~----~~~~~~~~~ 97 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR---------------G----PELLDNLEQ 97 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh---------------h----HHHHHhhhh
Confidence 367889999999999999999873 222224466665432 1110 0 112222322
Q ss_pred CeEEEEEecCCCCC-cccccc-ccCcccC-CCCCcEEEEEccchh---------HhhhhCCCCcccCCCCChhhhHHHhh
Q 035550 224 KKFLLVLDDVWNEN-YNDWDR-LRPPFEA-GAPGSKIIVTARNQG---------VAAIMGTAPAYQLKKLSNDDCLSVFA 291 (1385)
Q Consensus 224 ~~~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~ 291 (1385)
-. +||+||+.... ...|+. +...+.. ...|.+||+|++... ..+.+....+++++++++++-.+.+.
T Consensus 98 ~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 YE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred CC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 22 68899994321 124433 3333322 134667888887532 12223334678899999999999998
Q ss_pred hhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHH
Q 035550 292 QHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 327 (1385)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 327 (1385)
.++....- .-+ +++..-|++++.|-.-++..+
T Consensus 177 ~ka~~~~~-~l~---~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 177 LRASRRGL-HLT---DEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHHcCC-CCC---HHHHHHHHHhcCCCHHHHHHH
Confidence 66643221 111 356667888887765554443
No 118
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.00034 Score=85.11 Aligned_cols=192 Identities=15% Similarity=0.182 Sum_probs=105.7
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEe-------CCCCCHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCV-------SDDFDVI 189 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-------~~~~~~~ 189 (1385)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++..--....+ .+-.+ ....+..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~--~~~pC~~C~~~~~~~~Dvi 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD--LLEPCQECIENVNNSLDII 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCC--CCCchhHHHHhhcCCCcEE
Confidence 457899999999999986542 245678999999999999999976311000000 00000 0000000
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHHhH-cCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEE-EEccchhHh
Q 035550 190 RLTKSILLSIASDQIVDNHDLNKLQEELKKK-LSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKII-VTARNQGVA 267 (1385)
Q Consensus 190 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il-vTtR~~~v~ 267 (1385)
.+.+.......+.+++.+.+... ..+++-++|+|++..-....+..+...+........+| +|++...+.
T Consensus 91 --------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 91 --------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred --------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 00000000111122333322211 23566689999996555556666666555443445544 454444444
Q ss_pred hhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCch-HHHHH
Q 035550 268 AIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPL-AAKTL 327 (1385)
Q Consensus 268 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 327 (1385)
..+ .....+++.+++.++....+...+...+.... .+.+..|++.++|-+- |+..+
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id----~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE----KNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 332 23358999999999998888775432221111 2456678999988664 44433
No 119
>PF14516 AAA_35: AAA-like domain
Probab=97.73 E-value=0.002 Score=73.30 Aligned_cols=202 Identities=14% Similarity=0.096 Sum_probs=115.9
Q ss_pred CCeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCC-----CCHHH
Q 035550 116 EAKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD-----FDVIR 190 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~ 190 (1385)
.+-.|+|...-+++.+.+... ...+.|.|+-.+|||+|...+.+..+. ..+ .++++++..- .+..+
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLEQ 80 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHHH
Confidence 344678986677777777553 258999999999999999998874322 233 4557766542 24555
Q ss_pred HHHHHHHHhcC----CCCC------CccCHHHHHHHHHhHc---CCCeEEEEEecCCCCCc--cccccccCcccC----C
Q 035550 191 LTKSILLSIAS----DQIV------DNHDLNKLQEELKKKL---SPKKFLLVLDDVWNENY--NDWDRLRPPFEA----G 251 (1385)
Q Consensus 191 ~~~~i~~~~~~----~~~~------~~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~--~~~~~l~~~l~~----~ 251 (1385)
.++.++..+.. .... ...........+.+.+ .+++.+|++|+|..--. .-.+++...++. .
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 55555544433 2210 0112223333444432 26899999999932110 001122221110 0
Q ss_pred C----CC-cEEEE-EccchhHhhh-----hCCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCC
Q 035550 252 A----PG-SKIIV-TARNQGVAAI-----MGTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGL 320 (1385)
Q Consensus 252 ~----~g-s~ilv-TtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 320 (1385)
. .. -++++ .+........ ......++|++++.+|...|...+...- .. ...++|...+||+
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~----~~----~~~~~l~~~tgGh 232 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF----SQ----EQLEQLMDWTGGH 232 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC----CH----HHHHHHHHHHCCC
Confidence 0 11 12222 2211111111 1223578999999999999998764221 11 2277799999999
Q ss_pred chHHHHHhhhhcCC
Q 035550 321 PLAAKTLGGLLRGK 334 (1385)
Q Consensus 321 PLai~~~~~~l~~~ 334 (1385)
|.-+..++..+...
T Consensus 233 P~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 233 PYLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999764
No 120
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.00033 Score=81.82 Aligned_cols=176 Identities=13% Similarity=0.211 Sum_probs=99.1
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccc------ccCCcEEEEEeCCCCCHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQ------DHFDLKAWTCVSDDFDVIR 190 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~------~~f~~~~wv~~~~~~~~~~ 190 (1385)
.+++|.+..++.+..++.... -.+.+.++|++|+||||+|+.+.+...-. ..|...+ +.....
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~-~~l~~~----- 85 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI-FELDAA----- 85 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce-EEeccc-----
Confidence 457899999999999985432 24588899999999999999997632110 1111111 011000
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHHHh----HcCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEc-cchh
Q 035550 191 LTKSILLSIASDQIVDNHDLNKLQEELKK----KLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTA-RNQG 265 (1385)
Q Consensus 191 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~ 265 (1385)
.....+++.+.+.+ -..+++-++|+|++..-....++.+...+......+.+|++| ....
T Consensus 86 ---------------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~k 150 (367)
T PRK14970 86 ---------------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHK 150 (367)
T ss_pred ---------------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCccc
Confidence 00111222211111 112455589999984433344555554443333345555554 3333
Q ss_pred Hhhhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCch
Q 035550 266 VAAIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPL 322 (1385)
Q Consensus 266 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL 322 (1385)
+...+ .....++.++++.++....+...+...+.... .+....+++.++|.+-
T Consensus 151 l~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~----~~al~~l~~~~~gdlr 204 (367)
T PRK14970 151 IIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE----DDALHIIAQKADGALR 204 (367)
T ss_pred CCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhCCCCHH
Confidence 32222 22357899999999998888876643322111 2556668888888654
No 121
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.72 E-value=7.8e-05 Score=86.56 Aligned_cols=180 Identities=14% Similarity=0.136 Sum_probs=97.5
Q ss_pred CCeeeechhHHHHHHHHHhcCCcC-------CCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCH
Q 035550 116 EAKVYGRETEKKEIVELLLRDDLR-------NDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDV 188 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 188 (1385)
..++.|+++.++++.+.+...-.. +-...+-|.++|++|+|||++|+++++. ....| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~---- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG---- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch----
Confidence 346889999999999887432110 1122455889999999999999999984 33333 22211
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCC-----------cc---ccccccCcccC--CC
Q 035550 189 IRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNEN-----------YN---DWDRLRPPFEA--GA 252 (1385)
Q Consensus 189 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------~~---~~~~l~~~l~~--~~ 252 (1385)
..+... ..+ .....+...+...-...+.+|++||++.-. .. .+..+...+.. ..
T Consensus 190 ~~l~~~----~~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 SELVRK----YIG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred HHHHHH----hhh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 111111 100 001111222222223467899999984310 00 11112111111 12
Q ss_pred CCcEEEEEccchhHhhh-h----CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCc
Q 035550 253 PGSKIIVTARNQGVAAI-M----GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLP 321 (1385)
Q Consensus 253 ~gs~ilvTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 321 (1385)
.+.+||.||...+.... + .-...++++..+.++..++|..++.+... .....+ ..+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-~~~~~~----~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-AEDVDL----EAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-CccCCH----HHHHHHcCCCC
Confidence 45678888876432221 1 11357889999999999999988754321 111223 34777777753
No 122
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.71 E-value=3e-05 Score=57.42 Aligned_cols=39 Identities=33% Similarity=0.462 Sum_probs=29.1
Q ss_pred ccccEEecccccccccchhhhccCCccEEecCCCcchhhh
Q 035550 553 RYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKL 592 (1385)
Q Consensus 553 ~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~l 592 (1385)
++|++|++++|+|+.+|+.+++|++|++|++++| .+..+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 4688888888888888888888888888888887 34443
No 123
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.00041 Score=83.58 Aligned_cols=199 Identities=14% Similarity=0.124 Sum_probs=109.6
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++...-....+ +-.+. .-..-+.+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg----~C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCG----VCESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCccc----ccHHHHHhh
Confidence 468999999999999985432 235678999999999999999986321100000 00000 000011111
Q ss_pred HH---------hcCCCCCCccCHHHHHHHHHhH-cCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEc-cchh
Q 035550 197 LS---------IASDQIVDNHDLNKLQEELKKK-LSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTA-RNQG 265 (1385)
Q Consensus 197 ~~---------~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~ 265 (1385)
.. +.........+..++.+.+... ..+++-++|+|++..-+....+.+...+........+|++| ....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 00 0000000111222222222211 13455688999996666566667766666544556655544 4444
Q ss_pred Hhhhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCch-HHHHHhhhh
Q 035550 266 VAAIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPL-AAKTLGGLL 331 (1385)
Q Consensus 266 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~~l 331 (1385)
+...+ .....+++.+++.++..+.+.+.+........ .+....|++.++|-+- |+..+-.++
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~----~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD----DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44333 23467999999999988888776533221111 2345668889999774 454444433
No 124
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=6.3e-05 Score=77.85 Aligned_cols=190 Identities=14% Similarity=0.100 Sum_probs=120.1
Q ss_pred CCcccceeEEcccCcch--hhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCc-ccccccCCCCCcc
Q 035550 1136 LPSSLKSLVVWSCSKLE--SIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRL-EALPKGLHNLTSL 1212 (1385)
Q Consensus 1136 ~~~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~-~~lp~~l~~l~~L 1212 (1385)
..+.++++||.+|.+.. .+...+.++|.|+.|+|+.|++...+...-.++.+|++|-|.+..+. ......+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 33679999999998876 56677899999999999999965444322257789999999987643 2233456788999
Q ss_pred ceeeccccCCCCC---CcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCc
Q 035550 1213 QELTIGIGGALPS---LEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTA 1289 (1385)
Q Consensus 1213 ~~L~L~~n~~~~~---~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~ 1289 (1385)
+.|+++.|+.-.. -...-...+.+.+|+.-+|......... .-...+|++..+-+..|...- .+ -...
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~--~l~r~Fpnv~sv~v~e~PlK~--~s-----~ek~ 219 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN--KLSRIFPNVNSVFVCEGPLKT--ES-----SEKG 219 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH--hHHhhcccchheeeecCcccc--hh-----hccc
Confidence 9999998843221 1111123456777777777643221111 122456777777777763211 11 1122
Q ss_pred CCCCcccceeecccccccccccc--cCCCCCCCCeEeccCCCCCCCCC
Q 035550 1290 LPLPASLTSLWIFNFPNLERLSS--SIVDLQNLTELKLHNCPKLKYFP 1335 (1385)
Q Consensus 1290 ~~~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~l~ 1335 (1385)
....+++-.|++... ++.+..+ .++.+++|..|.+++.|-...+-
T Consensus 220 se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 220 SEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred CCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 223445556666553 5555433 67888888888888888665553
No 125
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.00061 Score=80.72 Aligned_cols=179 Identities=14% Similarity=0.141 Sum_probs=106.6
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccc--ccc----------------CC-cE
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQV--QDH----------------FD-LK 177 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~--~~~----------------f~-~~ 177 (1385)
.+++|-+..++.+...+.... -..+..++|+.|+||||+|+.+++..-- ... +. .+
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 458999999999999885432 2456789999999999999988763100 000 00 01
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhH----cCCCeEEEEEecCCCCCccccccccCcccCCCC
Q 035550 178 AWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKK----LSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAP 253 (1385)
Q Consensus 178 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 253 (1385)
+....+. ....+++.+.+... ..+++-++|+|++..-+.+..+.+...+.....
T Consensus 89 ~eldaas----------------------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~ 146 (535)
T PRK08451 89 IEMDAAS----------------------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPS 146 (535)
T ss_pred EEecccc----------------------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCC
Confidence 1111111 11233333333221 124566889999966555556666666655455
Q ss_pred CcEEEEEccch-hHhhhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHH
Q 035550 254 GSKIIVTARNQ-GVAAIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKT 326 (1385)
Q Consensus 254 gs~ilvTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 326 (1385)
.+++|++|.+. .+...+ .....+++.+++.++....+.+.+...+.... .+.+..|++.++|.+--+..
T Consensus 147 ~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~----~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 147 YVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE----PEALEILARSGNGSLRDTLT 217 (535)
T ss_pred ceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHH
Confidence 67777666553 222212 22358899999999998888766533221111 24566799999998854443
No 126
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.00087 Score=79.69 Aligned_cols=182 Identities=13% Similarity=0.132 Sum_probs=102.5
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccc--ccc-----------------CCcE
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQV--QDH-----------------FDLK 177 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~--~~~-----------------f~~~ 177 (1385)
.+++|.+.-++.+..++.... -...+.++|+.|+||||+|+.++....- ... |...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 457899999999999995432 2356678999999999999998763110 000 0011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHh-HcCCCeEEEEEecCCCCCccccccccCcccCCCCCcE
Q 035550 178 AWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKK-KLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSK 256 (1385)
Q Consensus 178 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 256 (1385)
+++..+... ...+...+.+.+.. -..+++-++|+|+++.-+....+.+...+........
T Consensus 91 ~eidaas~~-------------------gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 91 IEIDAASNR-------------------GIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred EEEeCccCC-------------------CHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 111111100 11112222222221 1235667999999955444445555555554434455
Q ss_pred EEEEc-cchhHhhhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHH
Q 035550 257 IIVTA-RNQGVAAIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKT 326 (1385)
Q Consensus 257 ilvTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 326 (1385)
+|++| +...+...+ .....+++.+++.++....+.+.+-..+.... .+.+..|++.++|.+-.+..
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id----~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE----EKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 55544 433333222 22357889999999988888776533221111 24456688889987654443
No 127
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.00032 Score=86.25 Aligned_cols=195 Identities=13% Similarity=0.166 Sum_probs=106.9
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++...-..... .....+.-...+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 468999999999988885432 235678999999999999999986321000000 000111112222222
Q ss_pred HHhcCC----CCCCccCHHHHHH---HHHhH-cCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccc-hhHh
Q 035550 197 LSIASD----QIVDNHDLNKLQE---ELKKK-LSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARN-QGVA 267 (1385)
Q Consensus 197 ~~~~~~----~~~~~~~~~~~~~---~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~ 267 (1385)
.....+ ........+++.+ .+... ..+++-++|+|++..-+....+.+...+......+.+|++|.+ ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 211110 0001122222222 22111 1245668999999544434455565555444445666665543 3333
Q ss_pred hhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHH
Q 035550 268 AIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKT 326 (1385)
Q Consensus 268 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 326 (1385)
..+ .....+++.+++.++....+.+.+........ .+.+..|++.++|.+..+..
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~----~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE----PGALEAIARAATGSMRDAEN 220 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 322 22357888999999988888776543221111 24566799999998865543
No 128
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.59 E-value=0.00059 Score=80.59 Aligned_cols=169 Identities=14% Similarity=0.118 Sum_probs=99.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSP 223 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 223 (1385)
...+.|+|..|+|||+|++++.+.......-..+++++ ..++...+...+.... ...+.+++.++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~--------~~~~~~~~~~~~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH--------KEIEQFKNEICQ 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh--------hHHHHHHHHhcc
Confidence 45688999999999999999988321111112334443 3456666666654311 112334444443
Q ss_pred CeEEEEEecCCCCCc-ccc-ccccCcccC-CCCCcEEEEEccch---------hHhhhhCCCCcccCCCCChhhhHHHhh
Q 035550 224 KKFLLVLDDVWNENY-NDW-DRLRPPFEA-GAPGSKIIVTARNQ---------GVAAIMGTAPAYQLKKLSNDDCLSVFA 291 (1385)
Q Consensus 224 ~~~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 291 (1385)
.-+||+||+..... ..+ +.+...+.. ...|..||+|+... .+...+...-++++++++.++-.+++.
T Consensus 207 -~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 207 -NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred -CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 34788999954321 112 233333321 12445788887643 223333445678899999999999999
Q ss_pred hhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHHhh
Q 035550 292 QHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGG 329 (1385)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 329 (1385)
+++-...- . ..--+++..-|++.++|.|-.+..+..
T Consensus 286 ~~~~~~gl-~-~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 286 KEIKNQNI-K-QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHhcCC-C-CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 88743211 0 011246777899999999877765543
No 129
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=0.00026 Score=85.94 Aligned_cols=202 Identities=15% Similarity=0.158 Sum_probs=106.3
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEE-eCCCCCHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTC-VSDDFDVIRLTKSI 195 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 195 (1385)
.++||.+..++.+..++..+. -...+.++|+.|+||||+|+.+++...-....+...|-. +....+.-..-+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 468899999999998885432 235688999999999999998876321111111001110 00000100111111
Q ss_pred HHHhcCC----CCCCccCHHHHHHHHHhH----cCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEc-cchhH
Q 035550 196 LLSIASD----QIVDNHDLNKLQEELKKK----LSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTA-RNQGV 266 (1385)
Q Consensus 196 ~~~~~~~----~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v 266 (1385)
...-... ........+++.+.+... ..+.+-++|+|+++.-+....+.+...+......+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 1000000 000111233333322211 23455578999995544445666666665544455555444 44444
Q ss_pred hhhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCch-HHHHH
Q 035550 267 AAIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPL-AAKTL 327 (1385)
Q Consensus 267 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 327 (1385)
...+ .....+++.+++.++....+.+.+........ .+.+..|++.++|..- |+..+
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~----~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID----ADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHH
Confidence 3332 33468999999999988877765432221111 2456779999999554 44433
No 130
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.58 E-value=0.00033 Score=74.28 Aligned_cols=160 Identities=17% Similarity=0.209 Sum_probs=89.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccC--CcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF--DLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKK 220 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (1385)
....+.|+|..|+|||.|.+++++. ..+.. ..+++++ ..++...+...+.... . ..+++.
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~~------~----~~~~~~ 94 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLS------AEEFIREFADALRDGE------I----EEFKDR 94 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEE------HHHHHHHHHHHHHTTS------H----HHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeec------HHHHHHHHHHHHHccc------c----hhhhhh
Confidence 4456889999999999999999984 33221 2355553 4456666666654321 2 224444
Q ss_pred cCCCeEEEEEecCCCCCc-ccccc-ccCcccC-CCCCcEEEEEccch---------hHhhhhCCCCcccCCCCChhhhHH
Q 035550 221 LSPKKFLLVLDDVWNENY-NDWDR-LRPPFEA-GAPGSKIIVTARNQ---------GVAAIMGTAPAYQLKKLSNDDCLS 288 (1385)
Q Consensus 221 l~~~~~LlVlDdv~~~~~-~~~~~-l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~ 288 (1385)
+++ -=+|++||++.-.. ..|+. +...+.. ...|-+||+|++.. +..+.+...-++++++.++++-.+
T Consensus 95 ~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~ 173 (219)
T PF00308_consen 95 LRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRR 173 (219)
T ss_dssp HCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHH
T ss_pred hhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHH
Confidence 443 33788999944221 12322 2222211 13466899999643 233344455689999999999999
Q ss_pred HhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHH
Q 035550 289 VFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAK 325 (1385)
Q Consensus 289 lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 325 (1385)
++.+.|....-. - -+++++-|++++.+..-.+.
T Consensus 174 il~~~a~~~~~~-l---~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 174 ILQKKAKERGIE-L---PEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHHHHTT---S----HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHHHHHhCCC-C---cHHHHHHHHHhhcCCHHHHH
Confidence 998887433221 1 13555566666665444443
No 131
>CHL00181 cbbX CbbX; Provisional
Probab=97.58 E-value=0.0012 Score=72.94 Aligned_cols=134 Identities=15% Similarity=0.091 Sum_probs=69.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPK 224 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 224 (1385)
..+.++|.+|+||||+|+.+++.....+.-...-|+.++. .. +.....+.. .......+.+. .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~----l~~~~~g~~------~~~~~~~l~~a---~ 122 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DD----LVGQYIGHT------APKTKEVLKKA---M 122 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HH----HHHHHhccc------hHHHHHHHHHc---c
Confidence 3577899999999999999976321111111112444441 12 222222111 11122223332 2
Q ss_pred eEEEEEecCCCC---------CccccccccCcccCCCCCcEEEEEccchhHhhhh--------CCCCcccCCCCChhhhH
Q 035550 225 KFLLVLDDVWNE---------NYNDWDRLRPPFEAGAPGSKIIVTARNQGVAAIM--------GTAPAYQLKKLSNDDCL 287 (1385)
Q Consensus 225 ~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~ 287 (1385)
.-+|++|++..- ..+..+.+...+.....+.+||+++......... .-...+++++++.+|..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 348999999431 0011122333333334456777777543332111 11347889999999988
Q ss_pred HHhhhhcc
Q 035550 288 SVFAQHSL 295 (1385)
Q Consensus 288 ~lf~~~a~ 295 (1385)
+++...+-
T Consensus 203 ~I~~~~l~ 210 (287)
T CHL00181 203 QIAKIMLE 210 (287)
T ss_pred HHHHHHHH
Confidence 88877754
No 132
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.58 E-value=0.00055 Score=80.89 Aligned_cols=182 Identities=15% Similarity=0.165 Sum_probs=102.2
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccc---------------------cCC
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQD---------------------HFD 175 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~---------------------~f~ 175 (1385)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++...-.. +++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 468899999999999985432 235678899999999999999876311000 011
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHh-HcCCCeEEEEEecCCCCCccccccccCcccCCCCC
Q 035550 176 LKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKK-KLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPG 254 (1385)
Q Consensus 176 ~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 254 (1385)
.+++...... ...+..++.+.+.. ...+++-++|+|++..-.....+.+...+.....+
T Consensus 92 -~~~i~g~~~~-------------------gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~ 151 (451)
T PRK06305 92 -VLEIDGASHR-------------------GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQH 151 (451)
T ss_pred -eEEeeccccC-------------------CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCC
Confidence 1111100000 01111112221111 11255668899998443333444555555544445
Q ss_pred cEEEEEccc-hhHhhhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCc-hHHHHH
Q 035550 255 SKIIVTARN-QGVAAIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLP-LAAKTL 327 (1385)
Q Consensus 255 s~ilvTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~ 327 (1385)
..+|++|.. ..+...+ .....+++.+++.++....+...+-....... .+.+..|++.++|.+ .|+..+
T Consensus 152 ~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~----~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 152 VKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS----REALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred ceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 666666533 3332222 22357899999999988888776532221111 245677999999966 444443
No 133
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.57 E-value=0.00034 Score=75.75 Aligned_cols=168 Identities=19% Similarity=0.239 Sum_probs=103.4
Q ss_pred CCeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHH
Q 035550 116 EAKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSI 195 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 195 (1385)
++.|.+|+.++..+..++...+ ..-...|.|+|-.|.|||.+.+++++... ...+|+++-+.+..+.+...|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHH
Confidence 4567899999999999886542 12345678999999999999999998542 236899999999999999999
Q ss_pred HHHhc-CCCCCCc-----cCHHHHHHHHHh--HcC--CCeEEEEEecCCCCCcccccccc-Ccc---c-CCCCCcEEEEE
Q 035550 196 LLSIA-SDQIVDN-----HDLNKLQEELKK--KLS--PKKFLLVLDDVWNENYNDWDRLR-PPF---E-AGAPGSKIIVT 260 (1385)
Q Consensus 196 ~~~~~-~~~~~~~-----~~~~~~~~~l~~--~l~--~~~~LlVlDdv~~~~~~~~~~l~-~~l---~-~~~~gs~ilvT 260 (1385)
+.+.. .+..+.. .........+.+ ... ++.++||||++ +...+.+.+. ..+ . -.....-+|++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDna--d~lrD~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNA--DALRDMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCH--HhhhccchHHHHHHHHHHHHhCCCceEEEE
Confidence 99985 2222111 112223333333 222 56899999999 3222322211 100 0 01122334444
Q ss_pred ccchhHhhh---hCCC--CcccCCCCChhhhHHHhhhh
Q 035550 261 ARNQGVAAI---MGTA--PAYQLKKLSNDDCLSVFAQH 293 (1385)
Q Consensus 261 tR~~~v~~~---~~~~--~~~~l~~L~~~~~~~lf~~~ 293 (1385)
+-....... ++.. .++..+.-+.+|..+++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 443222221 2332 34566777888888888653
No 134
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=0.0006 Score=83.48 Aligned_cols=176 Identities=13% Similarity=0.176 Sum_probs=105.3
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccc---------------------cccCC
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQV---------------------QDHFD 175 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~---------------------~~~f~ 175 (1385)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++...- ..+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 468899999999999985432 2356789999999999999888763110 01122
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhH----cCCCeEEEEEecCCCCCccccccccCcccCC
Q 035550 176 LKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKK----LSPKKFLLVLDDVWNENYNDWDRLRPPFEAG 251 (1385)
Q Consensus 176 ~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~ 251 (1385)
. ..+..... ...+++.+.+.+. ..+++=++|+|++..-+...++.+...+...
T Consensus 92 ~-~~ld~~~~----------------------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep 148 (614)
T PRK14971 92 I-HELDAASN----------------------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP 148 (614)
T ss_pred e-EEeccccc----------------------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC
Confidence 1 11111111 1122222222111 1244558899999655555666677666654
Q ss_pred CCCcEEEE-EccchhHhhhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHH
Q 035550 252 APGSKIIV-TARNQGVAAIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAA 324 (1385)
Q Consensus 252 ~~gs~ilv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 324 (1385)
..++.+|+ |++...+...+ .....+++.+++.++....+.+.+...+.... .+.+..|++.++|-.--+
T Consensus 149 p~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~----~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 149 PSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE----PEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 45566555 44444444433 23467999999999998888776533221111 245667889999866433
No 135
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.56 E-value=0.00028 Score=80.78 Aligned_cols=147 Identities=17% Similarity=0.186 Sum_probs=80.4
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.+++|.++..+.+..++.... -..++.++|++|+||||+|+.+++. .... ...++.+. .. ....+..+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~-~~~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CR-IDFVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-cc-HHHHHHHH
Confidence 467999999999999986432 2467778999999999999999873 2111 23333333 11 11111111
Q ss_pred HHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCC-CccccccccCcccCCCCCcEEEEEccchhH-hhhh-CCC
Q 035550 197 LSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNE-NYNDWDRLRPPFEAGAPGSKIIVTARNQGV-AAIM-GTA 273 (1385)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~~~~-~~~ 273 (1385)
..+.... ...+.+-++|+||+... ..+..+.+...+.....++++|+||..... ...+ ...
T Consensus 89 ~~~~~~~----------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 89 TRFASTV----------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHHHhh----------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 1111000 01134557899999443 112223333334444466788888865421 1111 112
Q ss_pred CcccCCCCChhhhHHHhh
Q 035550 274 PAYQLKKLSNDDCLSVFA 291 (1385)
Q Consensus 274 ~~~~l~~L~~~~~~~lf~ 291 (1385)
..+.++..+.++..+++.
T Consensus 153 ~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred eEEEeCCCCHHHHHHHHH
Confidence 345666666666655543
No 136
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.55 E-value=0.00092 Score=81.83 Aligned_cols=196 Identities=13% Similarity=0.197 Sum_probs=105.9
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++..--. ..+... ......-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~~----~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKPT----PEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCCC----CCCCcccHHHHHHh
Confidence 457899999999999886432 23567899999999999999998742111 110000 00111111222221
Q ss_pred HHhcCC----CCCCccCHHHHHHHHHhH----cCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccc-hhHh
Q 035550 197 LSIASD----QIVDNHDLNKLQEELKKK----LSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARN-QGVA 267 (1385)
Q Consensus 197 ~~~~~~----~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~ 267 (1385)
.....+ ........+.+.+.+... ..+++-++|+|++..-+...++.+...+........+|++|.+ ..+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 111100 000112233333322211 1245568899999554445566666666543344555544443 3333
Q ss_pred hhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHH
Q 035550 268 AIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKT 326 (1385)
Q Consensus 268 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 326 (1385)
..+ .....+++.+++.++....+.+.+........ .+.+..|++.++|.+..+..
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is----~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE----PEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 332 22356888899998888777765533221111 24566789999998765443
No 137
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.54 E-value=0.0007 Score=85.09 Aligned_cols=189 Identities=11% Similarity=0.091 Sum_probs=105.9
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-...... .....-..-+.|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHH
Confidence 468999999999999986432 2356789999999999999999763211111000 0000000000000
Q ss_pred HH---------hcCCCCCCccCHHHHHH---HHH-hHcCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccc
Q 035550 197 LS---------IASDQIVDNHDLNKLQE---ELK-KKLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARN 263 (1385)
Q Consensus 197 ~~---------~~~~~~~~~~~~~~~~~---~l~-~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 263 (1385)
.. +... ....++++.+ .+. .-..++.-++|||++..-+...++.|...+..-...+.+|++|.+
T Consensus 83 ~g~~~~~dv~eidaa---s~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~ 159 (824)
T PRK07764 83 PGGPGSLDVTEIDAA---SHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTE 159 (824)
T ss_pred cCCCCCCcEEEeccc---ccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 00 0000 0112222222 111 112355568899999666666677777777655556666655543
Q ss_pred -hhHhhhhC-CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHH
Q 035550 264 -QGVAAIMG-TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAA 324 (1385)
Q Consensus 264 -~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 324 (1385)
..+...+. ....|++..++.++..+.+.+..-.... ... .+....|++.++|.+..+
T Consensus 160 ~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv-~id---~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 160 PDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV-PVE---PGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHH
Confidence 34443332 2467999999999988888765422211 111 234456899999977433
No 138
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.53 E-value=0.00028 Score=74.12 Aligned_cols=182 Identities=17% Similarity=0.186 Sum_probs=110.6
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEE-EEeCCCCCHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAW-TCVSDDFDVIRLTKSI 195 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w-v~~~~~~~~~~~~~~i 195 (1385)
.+++|-+..+..+...+... ..+....+|++|.|||+-|..++...--.+.|.+++- .++|...... +.+.
T Consensus 36 de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~- 107 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE- 107 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh-
Confidence 46889999999999998652 4678899999999999999888764222344544432 2333322211 0000
Q ss_pred HHHhcCCCCCCccCHHHHHHHHHhHc--CCCe-EEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchh-HhhhhC
Q 035550 196 LLSIASDQIVDNHDLNKLQEELKKKL--SPKK-FLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQG-VAAIMG 271 (1385)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~~ 271 (1385)
...+.+.+........ .-++ =.+|||++..-..+.|..+...+......+|.++.+-... +...+.
T Consensus 108 ----------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 108 ----------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred ----------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 0111111111111000 0123 3789999977777899999888877666777555444322 222111
Q ss_pred -CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCC
Q 035550 272 -TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGL 320 (1385)
Q Consensus 272 -~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 320 (1385)
.-..|..++|.+++...-+...|-..+...+. +..+.|++.++|-
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~----~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDD----DALKLIAKISDGD 223 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCH----HHHHHHHHHcCCc
Confidence 12468899999999999888887554433332 4556688888883
No 139
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.52 E-value=0.00039 Score=88.68 Aligned_cols=155 Identities=15% Similarity=0.237 Sum_probs=83.7
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCcc---ccc-cCCcEEE-EEeCCCCCHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQ---VQD-HFDLKAW-TCVSDDFDVIRL 191 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~---~~~-~f~~~~w-v~~~~~~~~~~~ 191 (1385)
..++||++++.+++..|.... ..-+.++|.+|+||||+|+.+++... +.. -....+| +.++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh-------
Confidence 468999999999999986542 23455999999999999999987321 010 1122333 22211
Q ss_pred HHHHHHHhcCCCCCCccCH-HHHHHHHHhHc-CCCeEEEEEecCCCCCc-----cccc---cccCcccCCCCCcEEEEEc
Q 035550 192 TKSILLSIASDQIVDNHDL-NKLQEELKKKL-SPKKFLLVLDDVWNENY-----NDWD---RLRPPFEAGAPGSKIIVTA 261 (1385)
Q Consensus 192 ~~~i~~~~~~~~~~~~~~~-~~~~~~l~~~l-~~~~~LlVlDdv~~~~~-----~~~~---~l~~~l~~~~~gs~ilvTt 261 (1385)
+..... ...+. +.+...+.+.- .+++.+|++|+++.-.. ..-+ .+...+.. + .-++|-||
T Consensus 254 -------l~ag~~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~-G-~l~~IgaT 323 (852)
T TIGR03345 254 -------LQAGAS-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR-G-ELRTIAAT 323 (852)
T ss_pred -------hhcccc-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-C-CeEEEEec
Confidence 000000 00111 12222222221 25789999999843210 1111 12222222 1 24566666
Q ss_pred cchhHhhhh-------CCCCcccCCCCChhhhHHHhhhhc
Q 035550 262 RNQGVAAIM-------GTAPAYQLKKLSNDDCLSVFAQHS 294 (1385)
Q Consensus 262 R~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a 294 (1385)
...+....+ .....+.+++++.+++.+++....
T Consensus 324 T~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred CHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 554332211 123579999999999999975443
No 140
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.50 E-value=0.00098 Score=73.86 Aligned_cols=132 Identities=16% Similarity=0.126 Sum_probs=69.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCe
Q 035550 146 VIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKK 225 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 225 (1385)
-+.++|++|+||||+|+.++............-|+.++. . +++..+.+.. .....+.+.+. ..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~----~l~~~~~g~~------~~~~~~~~~~a---~~ 122 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----D----DLVGQYIGHT------APKTKEILKRA---MG 122 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----H----HHhHhhcccc------hHHHHHHHHHc---cC
Confidence 577999999999999987765221111111112444432 1 1222222211 11222233322 23
Q ss_pred EEEEEecCCCC----C-----ccccccccCcccCCCCCcEEEEEccchhHhhhhC--------CCCcccCCCCChhhhHH
Q 035550 226 FLLVLDDVWNE----N-----YNDWDRLRPPFEAGAPGSKIIVTARNQGVAAIMG--------TAPAYQLKKLSNDDCLS 288 (1385)
Q Consensus 226 ~LlVlDdv~~~----~-----~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~--------~~~~~~l~~L~~~~~~~ 288 (1385)
-+|+||++..- . .+.++.+...+.....+.+||+++.......... -...+++++++.+|-.+
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 58999999421 0 1122334444444445567777765432221111 13468899999999999
Q ss_pred Hhhhhc
Q 035550 289 VFAQHS 294 (1385)
Q Consensus 289 lf~~~a 294 (1385)
++.+.+
T Consensus 203 I~~~~l 208 (284)
T TIGR02880 203 IAGLML 208 (284)
T ss_pred HHHHHH
Confidence 888765
No 141
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.50 E-value=0.00051 Score=75.64 Aligned_cols=49 Identities=24% Similarity=0.342 Sum_probs=33.4
Q ss_pred eeeechhHHHHHHHHHhc---------CCcCCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 118 KVYGRETEKKEIVELLLR---------DDLRNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 118 ~~vGr~~~~~~l~~~L~~---------~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.++|.++.+++|.+.... ......+...-+.++|++|+||||+|+.+++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 478988777777544211 1111123455678999999999999999986
No 142
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.48 E-value=0.0012 Score=68.64 Aligned_cols=109 Identities=25% Similarity=0.308 Sum_probs=65.4
Q ss_pred CccCCeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHH
Q 035550 113 LVNEAKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLT 192 (1385)
Q Consensus 113 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 192 (1385)
.+.-.+++|.|.+++.|++-...--. + ....-|.+||..|.|||++++++.+...-++ .--|.+...
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~-G-~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~------- 89 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQ-G-LPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE------- 89 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHc-C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH-------
Confidence 34456799999999999875432211 1 2334567899999999999999987321111 111222221
Q ss_pred HHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCC-ccccccccCccc
Q 035550 193 KSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNEN-YNDWDRLRPPFE 249 (1385)
Q Consensus 193 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-~~~~~~l~~~l~ 249 (1385)
...++..+.+.++. +..||+|.+||+.-+. ......++..+.
T Consensus 90 -------------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~Le 132 (249)
T PF05673_consen 90 -------------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLE 132 (249)
T ss_pred -------------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhc
Confidence 22344455555553 3679999999984332 233455555554
No 143
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.47 E-value=0.00041 Score=88.03 Aligned_cols=155 Identities=16% Similarity=0.261 Sum_probs=82.8
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCcc---ccccC-CcEEEEEeCCCCCHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQ---VQDHF-DLKAWTCVSDDFDVIRLT 192 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~ 192 (1385)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.+++... +...+ +..+|.- +..
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~--- 247 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMG--- 247 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHH---
Confidence 368999999999999985542 23356899999999999999987321 11111 3344421 111
Q ss_pred HHHHHHhcCCCCCCccCHHHHHHHHHhHc-CCCeEEEEEecCCCCC---------ccccccccCcccCCCCC-cEEEEEc
Q 035550 193 KSILLSIASDQIVDNHDLNKLQEELKKKL-SPKKFLLVLDDVWNEN---------YNDWDRLRPPFEAGAPG-SKIIVTA 261 (1385)
Q Consensus 193 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~g-s~ilvTt 261 (1385)
.+.... . ...+.++....+.+.+ +.++.+|++|+++.-. .+.-+.+...+. .| -++|-+|
T Consensus 248 -~l~a~~---~--~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaT 318 (731)
T TIGR02639 248 -SLLAGT---K--YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGST 318 (731)
T ss_pred -HHhhhc---c--ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEec
Confidence 111100 0 0011222222222222 3468899999984210 011112222222 23 3455444
Q ss_pred cchhHhhhh-------CCCCcccCCCCChhhhHHHhhhhc
Q 035550 262 RNQGVAAIM-------GTAPAYQLKKLSNDDCLSVFAQHS 294 (1385)
Q Consensus 262 R~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a 294 (1385)
...+....+ ..-..+++++++.++..+++....
T Consensus 319 t~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred CHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 433322111 112478999999999999988654
No 144
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.46 E-value=0.0041 Score=69.69 Aligned_cols=197 Identities=14% Similarity=0.126 Sum_probs=108.0
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCc---cc----------cccCCcEEEEEeC
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDK---QV----------QDHFDLKAWTCVS 183 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~---~~----------~~~f~~~~wv~~~ 183 (1385)
.+++|.+..++.+...+.... -.....++|+.|+||+++|..+++.. .. .....-..|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 357899999999999985542 24688999999999999998876521 10 1111222343211
Q ss_pred CCCCHHHHHHHHHHHhcC-CCCCCccCHHHHHHHHHhHc-----CCCeEEEEEecCCCCCccccccccCcccCCCCCcEE
Q 035550 184 DDFDVIRLTKSILLSIAS-DQIVDNHDLNKLQEELKKKL-----SPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKI 257 (1385)
Q Consensus 184 ~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 257 (1385)
...+...+-..-++..+. ......-..+++. .+.+.+ .+++-++|+|++..-+......+...+.... .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 000000000111111110 0000111222222 233333 3566789999995544455555665554433 3345
Q ss_pred EE-EccchhHhhhhC-CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHH
Q 035550 258 IV-TARNQGVAAIMG-TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 327 (1385)
Q Consensus 258 lv-TtR~~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 327 (1385)
|+ |++...+...+. ....+++.+++.++..+.+.+...... .......++..++|.|..+..+
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-------chhHHHHHHHHcCCCHHHHHHH
Confidence 54 444444444432 346899999999999999987642110 0111346899999999766543
No 145
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.45 E-value=1.7e-05 Score=94.16 Aligned_cols=98 Identities=24% Similarity=0.383 Sum_probs=77.7
Q ss_pred cCCceeEEEEcCcccccccccccCCccccEEecccccccccchhhhccCCccEEecCCCcchhhhhhcccccCCCCeeec
Q 035550 528 KLQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLDN 607 (1385)
Q Consensus 528 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 607 (1385)
.+..++.+.+..|.|..+-..++.+++|.+|++.+|+|+.+...+..+.+|++|++++| .+..+ ..+..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i-~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKL-EGLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccc-cchhhccchhhhee
Confidence 45667777788888888666788999999999999999988776899999999999996 66666 45788888999999
Q ss_pred CCCCCcccccCCCCcccccccc
Q 035550 608 LDTGSLEEMPLGIGKLTCLQTL 629 (1385)
Q Consensus 608 ~~~~~~~~lp~~i~~L~~L~~L 629 (1385)
.+| .+..+. ++..+++|+.+
T Consensus 148 ~~N-~i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 148 SGN-LISDIS-GLESLKSLKLL 167 (414)
T ss_pred ccC-cchhcc-CCccchhhhcc
Confidence 999 555543 34445555555
No 146
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.45 E-value=0.0013 Score=77.70 Aligned_cols=159 Identities=14% Similarity=0.191 Sum_probs=89.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccC--CcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF--DLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKL 221 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 221 (1385)
...+.|+|..|+|||+||+++++. ..... ..++++++ .++...+...+... ..+... +.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~------~~~~~~----~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN------KMEEFK----EKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC------CHHHHH----HHH
Confidence 456889999999999999999984 32222 23455543 33444555554321 222232 233
Q ss_pred CCCeEEEEEecCCCCCccc-c-ccccCcccC-CCCCcEEEEEccch-h--------HhhhhCCCCcccCCCCChhhhHHH
Q 035550 222 SPKKFLLVLDDVWNENYND-W-DRLRPPFEA-GAPGSKIIVTARNQ-G--------VAAIMGTAPAYQLKKLSNDDCLSV 289 (1385)
Q Consensus 222 ~~~~~LlVlDdv~~~~~~~-~-~~l~~~l~~-~~~gs~ilvTtR~~-~--------v~~~~~~~~~~~l~~L~~~~~~~l 289 (1385)
++ .-+|||||+....... + +.+...+.. ...|..||+|+... . +...+.....+++++.+.++-.++
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 22 2388999995422111 1 122222211 12345677777642 2 122222234688999999999999
Q ss_pred hhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHH
Q 035550 290 FAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAK 325 (1385)
Q Consensus 290 f~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 325 (1385)
+.+.+.......+ +++...|++++.|..-.+.
T Consensus 277 l~~~~~~~~~~l~----~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 277 LQKKAEEEGLELP----DEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHcCCCCC----HHHHHHHHHhcCCCHHHHH
Confidence 9888754322111 3566678888887665433
No 147
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.41 E-value=0.0022 Score=77.53 Aligned_cols=193 Identities=15% Similarity=0.113 Sum_probs=106.6
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.+++|-+..++.+..++.... -...+.++|+.|+||||+|+.+++..--...... ..+..-.+ -+.+.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~----C~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSS----CKSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchH----HHHHH
Confidence 468999999999999996432 2457889999999999999999874211110000 00000000 01111
Q ss_pred HHhcCC----CCCCccCHHHHHHHH---Hh-HcCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccc-hhHh
Q 035550 197 LSIASD----QIVDNHDLNKLQEEL---KK-KLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARN-QGVA 267 (1385)
Q Consensus 197 ~~~~~~----~~~~~~~~~~~~~~l---~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~ 267 (1385)
..-... ........+++.+.. .. -..+++-++|+|++..-+...++.+...+........+|++|.. ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 000000 000012233332222 11 12355668999999655555566676666554455666665543 3333
Q ss_pred hhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHH
Q 035550 268 AIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAK 325 (1385)
Q Consensus 268 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 325 (1385)
..+ .....+++.+++.++..+.+.+.+........ .+.+..|++.++|.+-.+.
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id----~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE----DEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 222 22346889999999988888776543221111 2455668888998775443
No 148
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.39 E-value=0.00032 Score=81.59 Aligned_cols=159 Identities=14% Similarity=0.108 Sum_probs=86.8
Q ss_pred CeeeechhHHHHHHHHHhcCCc-------CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDL-------RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVI 189 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 189 (1385)
.++.|+++.++++.+.+...-. -+-...+-|.++|++|+|||++|+++++. .... |+.++. .
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~----~ 199 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG----S 199 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----H
Confidence 4578999999999887632110 01123456889999999999999999973 2222 222211 1
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCC-----------ccccccccCcc---cC--CCC
Q 035550 190 RLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNEN-----------YNDWDRLRPPF---EA--GAP 253 (1385)
Q Consensus 190 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------~~~~~~l~~~l---~~--~~~ 253 (1385)
.+. ....+ .....+...+...-...+.+|++||+..-. ......+...+ .. ...
T Consensus 200 ~l~----~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 200 ELV----QKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HHh----Hhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 111 11111 011112222222223567899999993210 00011111111 11 123
Q ss_pred CcEEEEEccchhHhhh-h-C---CCCcccCCCCChhhhHHHhhhhccC
Q 035550 254 GSKIIVTARNQGVAAI-M-G---TAPAYQLKKLSNDDCLSVFAQHSLG 296 (1385)
Q Consensus 254 gs~ilvTtR~~~v~~~-~-~---~~~~~~l~~L~~~~~~~lf~~~a~~ 296 (1385)
+.+||.||...+.... + . -+..+++++.+.++-.++|+.++.+
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~ 317 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK 317 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc
Confidence 5677778776543221 1 1 1356899999999999999887643
No 149
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.39 E-value=7.1e-06 Score=94.70 Aligned_cols=105 Identities=23% Similarity=0.178 Sum_probs=81.0
Q ss_pred cccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeec
Q 035550 1138 SSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTI 1217 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L 1217 (1385)
+.|+.|+|++|.....- .+..++.|++|||++|. +..+|.-...-..|+.|.|++|. +.++ .++.+|.+|+.||+
T Consensus 187 ~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN~-l~tL-~gie~LksL~~LDl 261 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNNA-LTTL-RGIENLKSLYGLDL 261 (1096)
T ss_pred HHhhhhccchhhhhhhH--HHHhcccccccccccch-hccccccchhhhhheeeeecccH-HHhh-hhHHhhhhhhccch
Confidence 68999999999776654 57789999999999999 66666533322359999999998 4444 36889999999999
Q ss_pred cccCCCCCC-cccCCCCCCcceeEecCCcch
Q 035550 1218 GIGGALPSL-EEEDGLPTNLQSLNIWGNMEI 1247 (1385)
Q Consensus 1218 ~~n~~~~~~-~~~~~~~~~L~~L~L~~n~~~ 1247 (1385)
++|-+.+.- -..+..+..|..|+|.||+.-
T Consensus 262 syNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 999866432 123556889999999999854
No 150
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.38 E-value=0.0015 Score=79.77 Aligned_cols=195 Identities=15% Similarity=0.183 Sum_probs=104.2
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++..--....+. ...+.-..-+.|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHh
Confidence 468999999999999885432 2356789999999999999998763110000000 0000000011110
Q ss_pred HH-------hcCCCCCCccCHHHHHHHHHhH-cCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEE-EccchhHh
Q 035550 197 LS-------IASDQIVDNHDLNKLQEELKKK-LSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIV-TARNQGVA 267 (1385)
Q Consensus 197 ~~-------~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~ 267 (1385)
.. +.+.......+..++.+.+... ..+++-++|+|++..-+....+.+...+......+.+|+ ||....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 00 0000000111222222222211 124555889999955544555666666654444556555 44444444
Q ss_pred hhhC-CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCc-hHHHHH
Q 035550 268 AIMG-TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLP-LAAKTL 327 (1385)
Q Consensus 268 ~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~ 327 (1385)
..+. ....+++.+++.++....+...+-..+.... .+....|+++++|.. .|+..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~----~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS----DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 3332 2357889999999988877765432221111 245566888998865 455444
No 151
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.37 E-value=0.0015 Score=76.92 Aligned_cols=153 Identities=14% Similarity=0.140 Sum_probs=84.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSP 223 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 223 (1385)
...+.|+|+.|+|||+||+++++. .......+++++ ...+...+...+... . .+.+++.++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~------~~~f~~~~~~~l~~~------~----~~~f~~~~~~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVR------SELFTEHLVSAIRSG------E----MQRFRQFYRN 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEee------HHHHHHHHHHHHhcc------h----HHHHHHHccc
Confidence 456889999999999999999984 222223345554 233444554444321 1 1224444433
Q ss_pred CeEEEEEecCCCCCcccc--ccccCcccC-CCCCcEEEEEccch---------hHhhhhCCCCcccCCCCChhhhHHHhh
Q 035550 224 KKFLLVLDDVWNENYNDW--DRLRPPFEA-GAPGSKIIVTARNQ---------GVAAIMGTAPAYQLKKLSNDDCLSVFA 291 (1385)
Q Consensus 224 ~~~LlVlDdv~~~~~~~~--~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 291 (1385)
.-+|++||+..-....| +.+...+.. ...|..||+||... .+...+.....+++.+++.++-.+++.
T Consensus 203 -~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 203 -VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred -CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 34888999844321111 122222211 01345688887542 122223334578899999999999998
Q ss_pred hhccCcCCCCCchhHHHHHHHHHHhcCC
Q 035550 292 QHSLGTRDFSSNKSLEEIGKKIVIKCNG 319 (1385)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~i~~~~~g 319 (1385)
+++...... -+ +++..-|++.+.|
T Consensus 282 ~k~~~~~~~-l~---~evl~~la~~~~~ 305 (445)
T PRK12422 282 RKAEALSIR-IE---ETALDFLIEALSS 305 (445)
T ss_pred HHHHHcCCC-CC---HHHHHHHHHhcCC
Confidence 877433211 11 2344445555554
No 152
>PRK06620 hypothetical protein; Validated
Probab=97.37 E-value=0.00067 Score=71.48 Aligned_cols=130 Identities=15% Similarity=0.157 Sum_probs=74.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPK 224 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 224 (1385)
+.+.|+|++|+|||+||+.+++... . .++. ..+. . + +.. ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~---------------------~-~-------~~~-~~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF---------------------N-E-------EIL-EK 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh---------------------c-h-------hHH-hc
Confidence 5689999999999999999877421 1 1111 0000 0 0 001 12
Q ss_pred eEEEEEecCCCCCccccc--cccCcccC-CCCCcEEEEEccchh-------HhhhhCCCCcccCCCCChhhhHHHhhhhc
Q 035550 225 KFLLVLDDVWNENYNDWD--RLRPPFEA-GAPGSKIIVTARNQG-------VAAIMGTAPAYQLKKLSNDDCLSVFAQHS 294 (1385)
Q Consensus 225 ~~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~ilvTtR~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 294 (1385)
.-++++||+. .|+ .+...+.. ...|..||+|++... ..+.+....+++++++++++-..++.+.+
T Consensus 86 ~d~lliDdi~-----~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 86 YNAFIIEDIE-----NWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred CCEEEEeccc-----cchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHH
Confidence 3478899994 232 12221111 134668999987532 23333445589999999999888887765
Q ss_pred cCcCCCCCchhHHHHHHHHHHhcCCCch
Q 035550 295 LGTRDFSSNKSLEEIGKKIVIKCNGLPL 322 (1385)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~i~~~~~g~PL 322 (1385)
.... ..-+ +++..-|++++.|---
T Consensus 161 ~~~~-l~l~---~ev~~~L~~~~~~d~r 184 (214)
T PRK06620 161 SISS-VTIS---RQIIDFLLVNLPREYS 184 (214)
T ss_pred HHcC-CCCC---HHHHHHHHHHccCCHH
Confidence 3221 1111 3556667777766443
No 153
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.35 E-value=1e-05 Score=93.46 Aligned_cols=62 Identities=27% Similarity=0.326 Sum_probs=47.1
Q ss_pred cccEEecccccccccchhhhccCCccEEecCCCcchhhhhhcccccCCCCeeecCCCCCcccccC
Q 035550 554 YLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLDNLDTGSLEEMPL 618 (1385)
Q Consensus 554 ~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~ 618 (1385)
.|.+-+.++|.+..+.+++.-|+.|+.|||++| .+...- .+..+++|+|||++.| .+..+|.
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~ 226 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQ 226 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccc-hhccccc
Confidence 356667777777777788888888999999986 455543 6788888999999888 5666664
No 154
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.32 E-value=4e-05 Score=69.88 Aligned_cols=93 Identities=27% Similarity=0.270 Sum_probs=73.8
Q ss_pred ccccCCceeEEEEcCcccccccccccC-CccccEEecccccccccchhhhccCCccEEecCCCcchhhhhhcccccCCCC
Q 035550 525 KLFKLQRLRVFSLRGYYISELPDSFGD-LRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLH 603 (1385)
Q Consensus 525 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~-L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 603 (1385)
.+.+..+|...+|++|.++.+|..|.. ...+..|+|++|.|..+|..+..++.|+.|+++.| .+...|..|..|.+|-
T Consensus 48 ~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLD 126 (177)
T ss_pred HHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHH
Confidence 345667788888899988888877654 34788889999999999988888889999999886 6777788888888888
Q ss_pred eeecCCCCCcccccCC
Q 035550 604 HLDNLDTGSLEEMPLG 619 (1385)
Q Consensus 604 ~L~l~~~~~~~~lp~~ 619 (1385)
.|+..+| ....+|..
T Consensus 127 ~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 127 MLDSPEN-ARAEIDVD 141 (177)
T ss_pred HhcCCCC-ccccCcHH
Confidence 8888777 56666654
No 155
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.31 E-value=0.003 Score=76.82 Aligned_cols=192 Identities=16% Similarity=0.177 Sum_probs=102.8
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++..--...-+ ..+.+.-..-+.+.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 468999999999999986542 245677899999999999999876211000000 00111111111111
Q ss_pred HHhcCC----CCCCccCHH---HHHHHHHhH-cCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEc-cchhHh
Q 035550 197 LSIASD----QIVDNHDLN---KLQEELKKK-LSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTA-RNQGVA 267 (1385)
Q Consensus 197 ~~~~~~----~~~~~~~~~---~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~ 267 (1385)
...... ........+ ++.+.+... ..+++-++|+|++..-....+..+...+........+|++| ....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 100000 000011222 222222211 23566688999995544455666665554433444555444 433333
Q ss_pred hhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHH
Q 035550 268 AIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAA 324 (1385)
Q Consensus 268 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 324 (1385)
..+ .....++..+++.++....+...+-..+.... .+....|++.++|.+..+
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 322 22356888999999988888776533221111 245566888888876543
No 156
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.30 E-value=0.00092 Score=85.94 Aligned_cols=156 Identities=20% Similarity=0.220 Sum_probs=82.8
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCcc---ccccC-CcEEEEEeCCCCCHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQ---VQDHF-DLKAWTCVSDDFDVIRLT 192 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~ 192 (1385)
..++||++++++++++|.... ..-+.++|++|+|||++|+.++.... +.... +..+|. + +...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~-- 245 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGL-- 245 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHH--
Confidence 358999999999999996542 22446999999999999999887321 11111 234552 1 1111
Q ss_pred HHHHHHhcCCCCCCccCHHH-HHHHHHhHcCCCeEEEEEecCCCCC-------ccccccccCcccCCCCCcEEEEEccch
Q 035550 193 KSILLSIASDQIVDNHDLNK-LQEELKKKLSPKKFLLVLDDVWNEN-------YNDWDRLRPPFEAGAPGSKIIVTARNQ 264 (1385)
Q Consensus 193 ~~i~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~gs~ilvTtR~~ 264 (1385)
++ .+... ..+.++ +...+.+.-+.++.+|++|+++.-. ..+...+..+....+ .-++|.+|...
T Consensus 246 --l~---ag~~~--~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ 317 (821)
T CHL00095 246 --LL---AGTKY--RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLD 317 (821)
T ss_pred --Hh---ccCCC--ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHH
Confidence 11 11111 111222 2222322223578999999993210 001111221111111 24566666655
Q ss_pred hHhhhh-------CCCCcccCCCCChhhhHHHhhhh
Q 035550 265 GVAAIM-------GTAPAYQLKKLSNDDCLSVFAQH 293 (1385)
Q Consensus 265 ~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~ 293 (1385)
+..... .....+++...+.++...++...
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 443221 12246788888888888877643
No 157
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.30 E-value=0.001 Score=78.54 Aligned_cols=160 Identities=18% Similarity=0.151 Sum_probs=91.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccc-CC-cEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDH-FD-LKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKL 221 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~-f~-~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 221 (1385)
..-+.|+|.+|+|||+||+++++. .... .. .++|++. .++..++...+... ..+. +++..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~------~~~~----f~~~~ 191 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG------KLNE----FREKY 191 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc------cHHH----HHHHH
Confidence 445899999999999999999984 3322 22 4556643 34555665555321 1222 33333
Q ss_pred CCCeEEEEEecCCCCC-cccc-ccccCcccC-CCCCcEEEEEcc-chhH--------hhhhCCCCcccCCCCChhhhHHH
Q 035550 222 SPKKFLLVLDDVWNEN-YNDW-DRLRPPFEA-GAPGSKIIVTAR-NQGV--------AAIMGTAPAYQLKKLSNDDCLSV 289 (1385)
Q Consensus 222 ~~~~~LlVlDdv~~~~-~~~~-~~l~~~l~~-~~~gs~ilvTtR-~~~v--------~~~~~~~~~~~l~~L~~~~~~~l 289 (1385)
+.+.-+||+||+..-. ...+ +.+...+.. ...|..||+||. .+.- ...+.....+++++.+.+.-.++
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 3345589999995321 0111 122222211 123457888875 3222 12223345788999999999999
Q ss_pred hhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHH
Q 035550 290 FAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAK 325 (1385)
Q Consensus 290 f~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 325 (1385)
+.+.+....... + +++..-|++++.|.--.+.
T Consensus 272 L~~~~~~~~~~l-~---~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 272 ARKMLEIEHGEL-P---EEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHhcCCCC-C---HHHHHHHHhccccCHHHHH
Confidence 988864322111 1 3566678888777544333
No 158
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.30 E-value=2.7e-05 Score=70.99 Aligned_cols=98 Identities=17% Similarity=0.188 Sum_probs=82.1
Q ss_pred CceeEEEEcCccccccc---ccccCCccccEEecccccccccchhhhc-cCCccEEecCCCcchhhhhhcccccCCCCee
Q 035550 530 QRLRVFSLRGYYISELP---DSFGDLRYLRYLNLSLTEIRTLPESVNK-LYNLHTLLLEGCRRLKKLCADMGNLIKLHHL 605 (1385)
Q Consensus 530 ~~Lr~L~L~~~~i~~lp---~~i~~L~~L~~L~L~~~~i~~lP~~i~~-L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 605 (1385)
+.+..+||+.|.+-.++ ..+....+|...+|++|.++.+|+.|.. .+.+++|++++| .+..+|.++..++.|+.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhc
Confidence 45667889999877665 4556778899999999999999998854 559999999996 899999999999999999
Q ss_pred ecCCCCCcccccCCCCcccccccc
Q 035550 606 DNLDTGSLEEMPLGIGKLTCLQTL 629 (1385)
Q Consensus 606 ~l~~~~~~~~lp~~i~~L~~L~~L 629 (1385)
+++.| .+...|.-+..|.+|-.|
T Consensus 106 Nl~~N-~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 106 NLRFN-PLNAEPRVIAPLIKLDML 128 (177)
T ss_pred ccccC-ccccchHHHHHHHhHHHh
Confidence 99999 677778777777777666
No 159
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.22 E-value=0.0023 Score=76.40 Aligned_cols=155 Identities=12% Similarity=0.163 Sum_probs=88.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccC--CcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF--DLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKL 221 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 221 (1385)
...+.|+|..|+|||.|++++++. ....+ ..+++++. .++..++...+... ..+ .+++.+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~------~~~----~f~~~y 375 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG------KGD----SFRRRY 375 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc------cHH----HHHHHh
Confidence 345899999999999999999984 32222 23455543 33444554443221 112 233333
Q ss_pred CCCeEEEEEecCCCCCc-cccc-cccCcccC-CCCCcEEEEEccch---------hHhhhhCCCCcccCCCCChhhhHHH
Q 035550 222 SPKKFLLVLDDVWNENY-NDWD-RLRPPFEA-GAPGSKIIVTARNQ---------GVAAIMGTAPAYQLKKLSNDDCLSV 289 (1385)
Q Consensus 222 ~~~~~LlVlDdv~~~~~-~~~~-~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~l 289 (1385)
+. -=+|||||+..... ..|+ .+...+.. ...|..|||||+.. .+...+...-+++|.+.+.+.-.++
T Consensus 376 ~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 376 RE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred hc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 32 24788999954322 1222 22222221 12355688888752 2333344456889999999999999
Q ss_pred hhhhccCcCCCCCchhHHHHHHHHHHhcCCCc
Q 035550 290 FAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLP 321 (1385)
Q Consensus 290 f~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 321 (1385)
+.+++....-..+ +++..-|++++.+..
T Consensus 455 L~kka~~r~l~l~----~eVi~yLa~r~~rnv 482 (617)
T PRK14086 455 LRKKAVQEQLNAP----PEVLEFIASRISRNI 482 (617)
T ss_pred HHHHHHhcCCCCC----HHHHHHHHHhccCCH
Confidence 9988754322111 355556666666553
No 160
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.17 E-value=0.0011 Score=77.08 Aligned_cols=157 Identities=15% Similarity=0.120 Sum_probs=86.1
Q ss_pred eeeechhHHHHHHHHHhcCCc-------CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHH
Q 035550 118 KVYGRETEKKEIVELLLRDDL-------RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIR 190 (1385)
Q Consensus 118 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 190 (1385)
++.|.++.+++|.+.+.-.-. -+-...+-|.++|++|+|||++|+.+++. ....| +.+..+.
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se------ 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE------ 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch------
Confidence 467889899888887642110 01123456789999999999999999983 33333 1221111
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCC--------ccc------cccccCcccC--CCCC
Q 035550 191 LTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNEN--------YND------WDRLRPPFEA--GAPG 254 (1385)
Q Consensus 191 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--------~~~------~~~l~~~l~~--~~~g 254 (1385)
+.. ...+ .....+...+.....+.+.+|+||++..-. ..+ .-.+...+.. ...+
T Consensus 253 L~~----k~~G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 253 LIQ----KYLG------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred hhh----hhcc------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 111 1111 111112223333334678899999972110 000 0011111111 1235
Q ss_pred cEEEEEccchhHhhhh--C---CCCcccCCCCChhhhHHHhhhhcc
Q 035550 255 SKIIVTARNQGVAAIM--G---TAPAYQLKKLSNDDCLSVFAQHSL 295 (1385)
Q Consensus 255 s~ilvTtR~~~v~~~~--~---~~~~~~l~~L~~~~~~~lf~~~a~ 295 (1385)
.+||+||...+..... . -+..++++..+.++..++|..++.
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 6788888765544332 1 135788999999999999987753
No 161
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.15 E-value=0.0025 Score=76.28 Aligned_cols=159 Identities=14% Similarity=0.177 Sum_probs=90.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccC--CcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF--DLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKL 221 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 221 (1385)
..-+.|+|..|+|||+||+++++. ....+ ..+++++.. .+...+...+... ..+. +.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~------~~~~----~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRNN------TMEE----FKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHcC------cHHH----HHHHH
Confidence 456889999999999999999984 33332 234455432 3344444444221 1222 33333
Q ss_pred CCCeEEEEEecCCCCCccc-c-ccccCcccC-CCCCcEEEEEccchh---------HhhhhCCCCcccCCCCChhhhHHH
Q 035550 222 SPKKFLLVLDDVWNENYND-W-DRLRPPFEA-GAPGSKIIVTARNQG---------VAAIMGTAPAYQLKKLSNDDCLSV 289 (1385)
Q Consensus 222 ~~~~~LlVlDdv~~~~~~~-~-~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~l 289 (1385)
+ +.-+||+||+..-.... + +.+...+.. ...|..||+|+.... +.+.+.....+++++.+.++-.++
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 23489999994321111 1 222222211 123445788776431 223333445789999999999999
Q ss_pred hhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHH
Q 035550 290 FAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAK 325 (1385)
Q Consensus 290 f~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 325 (1385)
+.+.+...... -+ +++..-|++.++|..-.+.
T Consensus 289 l~~~~~~~~~~-l~---~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 289 LKKKAEEEGID-LP---DEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHcCCC-CC---HHHHHHHHcCcCCCHHHHH
Confidence 99887532211 11 3566778888888765433
No 162
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.0049 Score=69.42 Aligned_cols=97 Identities=15% Similarity=0.161 Sum_probs=63.2
Q ss_pred CCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccch-hHhhhhC-CCCcccCCCCChhhhHHHhhhhccCcCCC
Q 035550 223 PKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQ-GVAAIMG-TAPAYQLKKLSNDDCLSVFAQHSLGTRDF 300 (1385)
Q Consensus 223 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 300 (1385)
+++-++|+|++..-+......+...+.....++.+|+||.+. .+...+. .-..+.+.+++.+++.+.+......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~---- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE---- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc----
Confidence 344455779996656566666666665544567777777665 3433332 2357999999999999988765311
Q ss_pred CCchhHHHHHHHHHHhcCCCchHHHHH
Q 035550 301 SSNKSLEEIGKKIVIKCNGLPLAAKTL 327 (1385)
Q Consensus 301 ~~~~~~~~~~~~i~~~~~g~PLai~~~ 327 (1385)
.. .+.+..++..++|.|..+..+
T Consensus 181 ~~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 SD----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CC----hHHHHHHHHHcCCCHHHHHHH
Confidence 11 233456789999999866554
No 163
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.11 E-value=0.0022 Score=82.72 Aligned_cols=45 Identities=27% Similarity=0.408 Sum_probs=36.7
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
..++||++++.+++..|.... ..-+.++|.+|+|||++|+.++..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999995542 234458999999999999998874
No 164
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.08 E-value=0.003 Score=74.52 Aligned_cols=167 Identities=13% Similarity=0.155 Sum_probs=88.1
Q ss_pred CeeeechhHHHHHHHHHhcCCc-------CCCCCcEEEEEEcCCCChHHHHHHHHhcCcccc---ccCCcEEEEEeCCCC
Q 035550 117 AKVYGRETEKKEIVELLLRDDL-------RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQ---DHFDLKAWTCVSDDF 186 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~ 186 (1385)
.++.|.++.++++.+.+...-. -+-...+-+.++|++|.|||++|+++++..... .......++.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 4577899999999887642110 011234568899999999999999999843211 01123344444331
Q ss_pred CHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHc-CCCeEEEEEecCCCCC-------cccc-----ccccCcccCC--
Q 035550 187 DVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKL-SPKKFLLVLDDVWNEN-------YNDW-----DRLRPPFEAG-- 251 (1385)
Q Consensus 187 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~-------~~~~-----~~l~~~l~~~-- 251 (1385)
.+ +....+. .......+.+..++.. .+++++|+||+++.-- ..+. ..+...+...
T Consensus 261 ---eL----l~kyvGe---te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 261 ---EL----LNKYVGE---TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred ---hh----cccccch---HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc
Confidence 01 1111000 0011122222233222 3578999999994210 0011 1222222211
Q ss_pred CCCcEEEEEccchhHhhh-h-C---CCCcccCCCCChhhhHHHhhhhc
Q 035550 252 APGSKIIVTARNQGVAAI-M-G---TAPAYQLKKLSNDDCLSVFAQHS 294 (1385)
Q Consensus 252 ~~gs~ilvTtR~~~v~~~-~-~---~~~~~~l~~L~~~~~~~lf~~~a 294 (1385)
..+..||.||...+.... + . -+..++++..+.++..++|..+.
T Consensus 331 ~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 134455666655443221 1 1 13468999999999999998875
No 165
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.08 E-value=8.1e-05 Score=76.01 Aligned_cols=88 Identities=22% Similarity=0.214 Sum_probs=64.3
Q ss_pred ccccccCCceeEEEEcCcccc-----cccccccCCccccEEecccccc---c-ccc-------hhhhccCCccEEecCCC
Q 035550 523 LPKLFKLQRLRVFSLRGYYIS-----ELPDSFGDLRYLRYLNLSLTEI---R-TLP-------ESVNKLYNLHTLLLEGC 586 (1385)
Q Consensus 523 ~~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~i---~-~lP-------~~i~~L~~L~~L~L~~~ 586 (1385)
...+..+..+..++||||.|. .+-..|.+-++|+.-+++.-.. . ++| +.+-++++|+..+||.|
T Consensus 23 ~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 23 VEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 344556788999999999875 3456677788999999886321 1 333 34567899999999998
Q ss_pred cchhhhhhc----ccccCCCCeeecCCC
Q 035550 587 RRLKKLCAD----MGNLIKLHHLDNLDT 610 (1385)
Q Consensus 587 ~~l~~lp~~----i~~L~~L~~L~l~~~ 610 (1385)
..-...|+. |+.-+.|.||.+++|
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecC
Confidence 655555443 677889999999988
No 166
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.012 Score=66.65 Aligned_cols=149 Identities=18% Similarity=0.285 Sum_probs=90.3
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHc
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKL 221 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 221 (1385)
.....+.+.|++|+|||+||.+++.+ ..|..+--++..+-... . +......+...+...-
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~miG~-------------s---EsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPEDMIGL-------------S---ESAKCAHIKKIFEDAY 595 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHHccCc-------------c---HHHHHHHHHHHHHHhh
Confidence 45667889999999999999999863 34554433321111000 0 1122233444455555
Q ss_pred CCCeEEEEEecCCCCCccccccccCcc---------------cCCCCCcEEEEEccchhHhhhhCC----CCcccCCCCC
Q 035550 222 SPKKFLLVLDDVWNENYNDWDRLRPPF---------------EAGAPGSKIIVTARNQGVAAIMGT----APAYQLKKLS 282 (1385)
Q Consensus 222 ~~~~~LlVlDdv~~~~~~~~~~l~~~l---------------~~~~~gs~ilvTtR~~~v~~~~~~----~~~~~l~~L~ 282 (1385)
+..--.||+||+ +..-+|-.+...+ |+.++.--|+-||..+.+...|+- ...|+++.++
T Consensus 596 kS~lsiivvDdi--ErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDI--ERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcch--hhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 667779999999 5556676655433 222223335568888888888763 3578899888
Q ss_pred h-hhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhc
Q 035550 283 N-DDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKC 317 (1385)
Q Consensus 283 ~-~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~ 317 (1385)
. ++..+.++..- .-.+.+.+.++.+...+|
T Consensus 674 ~~~~~~~vl~~~n-----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELN-----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHcc-----CCCcchhHHHHHHHhccc
Confidence 7 77777776542 112334455666666666
No 167
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.07 E-value=0.0015 Score=79.38 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=40.9
Q ss_pred CCeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 116 EAKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
-.+++|.++.++++..++..... +....+++.|+|++|+||||+++.++..
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999865432 2234468999999999999999999974
No 168
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.07 E-value=0.0021 Score=80.29 Aligned_cols=156 Identities=21% Similarity=0.277 Sum_probs=83.3
Q ss_pred eeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCcc---cccc-CCcEEEEEeCCCCCHHHHHH
Q 035550 118 KVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQ---VQDH-FDLKAWTCVSDDFDVIRLTK 193 (1385)
Q Consensus 118 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~---~~~~-f~~~~wv~~~~~~~~~~~~~ 193 (1385)
.++||+++++++++.|.... ..-+.++|.+|+|||++|+.++.... +... .+..+|.. +..
T Consensus 187 ~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~---- 251 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG---- 251 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH----
Confidence 58999999999999996542 12345899999999999999986311 1111 23444421 111
Q ss_pred HHHHHhcCCCCCCccCHHHHHHHHHhHc-CCCeEEEEEecCCCC--------CccccccccCcccCCCCCcEEEEEccch
Q 035550 194 SILLSIASDQIVDNHDLNKLQEELKKKL-SPKKFLLVLDDVWNE--------NYNDWDRLRPPFEAGAPGSKIIVTARNQ 264 (1385)
Q Consensus 194 ~i~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 264 (1385)
.++ .+... ..+.+.....+.+.+ +.++.+|++|++..- ...+...+..++...+ .-+||-+|...
T Consensus 252 ~ll---aG~~~--~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~ 325 (758)
T PRK11034 252 SLL---AGTKY--RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQ 325 (758)
T ss_pred HHh---cccch--hhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChH
Confidence 111 11110 111222222222222 356789999999421 0111112222222222 23455555444
Q ss_pred hHhhhh-------CCCCcccCCCCChhhhHHHhhhhc
Q 035550 265 GVAAIM-------GTAPAYQLKKLSNDDCLSVFAQHS 294 (1385)
Q Consensus 265 ~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a 294 (1385)
+....+ ..-..+++++.+.+++.+++....
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 432211 122478899999999999987653
No 169
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.07 E-value=0.00056 Score=66.69 Aligned_cols=21 Identities=43% Similarity=0.464 Sum_probs=19.3
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 035550 147 IPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 147 v~i~G~gGiGKTtLa~~v~~~ 167 (1385)
|.|+|++|+||||+|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 568999999999999999984
No 170
>PRK08116 hypothetical protein; Validated
Probab=97.03 E-value=0.0012 Score=72.21 Aligned_cols=104 Identities=25% Similarity=0.288 Sum_probs=59.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPK 224 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 224 (1385)
..+.++|..|+|||.||.++++. ....-..+++++ ..+++..+........ ..+..+ +.+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~~~~---~~~~~~----~~~~l~~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYKSSG---KEDENE----IIRSLVNA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhccc---cccHHH----HHHHhcCC
Confidence 45889999999999999999984 322333455654 3345555544433211 111222 33334433
Q ss_pred eEEEEEecCCCCCcccccc--ccCcccC-CCCCcEEEEEccch
Q 035550 225 KFLLVLDDVWNENYNDWDR--LRPPFEA-GAPGSKIIVTARNQ 264 (1385)
Q Consensus 225 ~~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~ilvTtR~~ 264 (1385)
. ||||||+..+...+|.. +...+.. ...|..+||||...
T Consensus 180 d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 D-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred C-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3 89999995544445543 2222221 12455688888753
No 171
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.01 E-value=0.0042 Score=71.86 Aligned_cols=178 Identities=13% Similarity=0.127 Sum_probs=93.9
Q ss_pred CeeeechhHHHHHHHHHhcCCc-------CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDL-------RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVI 189 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 189 (1385)
.++.|.+..+++|.+.+...-. -+-...+-|.++|++|.|||++|+++++. ....| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f---i~i~~------s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF---IRVVG------S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEeh------H
Confidence 3578998888888876632100 01123567889999999999999999984 22222 12211 1
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCC------c----cc----cccccCcccC--CCC
Q 035550 190 RLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNEN------Y----ND----WDRLRPPFEA--GAP 253 (1385)
Q Consensus 190 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~----~~----~~~l~~~l~~--~~~ 253 (1385)
.+ .....+ .....+.+.+.......+.+|++|++..-- . .. +..+...+.. ...
T Consensus 214 ~l----~~k~~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 214 EF----VQKYLG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred HH----HHHhcc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 11 111111 111122233333335678999999973210 0 00 1111111211 124
Q ss_pred CcEEEEEccchhHhhh-h-C---CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCC
Q 035550 254 GSKIIVTARNQGVAAI-M-G---TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGL 320 (1385)
Q Consensus 254 gs~ilvTtR~~~v~~~-~-~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 320 (1385)
+..||+||...+.... + . -+..++++..+.++..++|..+..+.. .....++.+ +++.+.|.
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~-l~~dvd~~~----la~~t~g~ 350 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN-LSEEVDLED----FVSRPEKI 350 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC-CCcccCHHH----HHHHcCCC
Confidence 5678888876544322 1 1 134688888888888888876643221 122223333 55666554
No 172
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.99 E-value=0.01 Score=61.37 Aligned_cols=178 Identities=16% Similarity=0.193 Sum_probs=102.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeC-CCCCHHHHHHHHHHHhcCCCCCCccCHH----HHHHHHH
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVS-DDFDVIRLTKSILLSIASDQIVDNHDLN----KLQEELK 218 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~l~ 218 (1385)
.+++.++|.-|.|||.++++.... .. =+.++-|.+. +..+...+...++..+.... ..... .....+.
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s--~~--~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p---~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLAS--LN--EDQVAVVVIDKPTLSDATLLEAIVADLESQP---KVNVNAVLEQIDRELA 123 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHh--cC--CCceEEEEecCcchhHHHHHHHHHHHhccCc---cchhHHHHHHHHHHHH
Confidence 458999999999999999954431 11 1122223333 34677888888888887732 22333 3333333
Q ss_pred hHc-CCCe-EEEEEecCCCCCccccccccCcccCCCCC---cEEEEEccch-------hHhhhhC-CCCc-ccCCCCChh
Q 035550 219 KKL-SPKK-FLLVLDDVWNENYNDWDRLRPPFEAGAPG---SKIIVTARNQ-------GVAAIMG-TAPA-YQLKKLSND 284 (1385)
Q Consensus 219 ~~l-~~~~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~g---s~ilvTtR~~-------~v~~~~~-~~~~-~~l~~L~~~ 284 (1385)
+.. +++| ..+++||..+...+..+.++-...-...+ -+|+..-.-+ .+....+ .... |++.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 333 4677 89999999766555555544322211111 1233322111 1111111 1123 899999999
Q ss_pred hhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHHhh
Q 035550 285 DCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGG 329 (1385)
Q Consensus 285 ~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 329 (1385)
+...++..+..+.....+- --.+....|..+..|.|.+|..++.
T Consensus 204 ~t~~yl~~~Le~a~~~~~l-~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPL-FSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCCccc-CChhHHHHHHHHhccchHHHHHHHH
Confidence 9988888775443221111 1134555689999999999987653
No 173
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.97 E-value=0.002 Score=63.90 Aligned_cols=87 Identities=20% Similarity=0.069 Sum_probs=45.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPK 224 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 224 (1385)
..+.|+|++|+||||+|+.++... ......++.+..+........... ........ ...........+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL--GPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKK-ASGSGELRLRLALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc--CCCCCCEEEECCEEccccCHHHHH--hhhhhccC-CCCCHHHHHHHHHHHHHhc
Confidence 578999999999999999999842 222223555555443322222111 11111111 1112222223333333333
Q ss_pred -eEEEEEecCCCC
Q 035550 225 -KFLLVLDDVWNE 236 (1385)
Q Consensus 225 -~~LlVlDdv~~~ 236 (1385)
..+|++|+++.-
T Consensus 78 ~~~viiiDei~~~ 90 (148)
T smart00382 78 KPDVLILDEITSL 90 (148)
T ss_pred CCCEEEEECCccc
Confidence 489999999553
No 174
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.97 E-value=0.0036 Score=62.79 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=36.0
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.++||-|+.++++.-.-.+. +.+-+.|.||+|+||||-+..+++
T Consensus 27 ~dIVGNe~tv~rl~via~~g------nmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEG------NMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCceEeeCCCCCchhhHHHHHHH
Confidence 46899999999987776443 457788999999999998877776
No 175
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.96 E-value=0.0035 Score=71.10 Aligned_cols=164 Identities=18% Similarity=0.179 Sum_probs=91.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcC
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLS 222 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 222 (1385)
....+.|+|..|.|||.|++++.+. ..........+.+ +.+.....++..+... -.+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~----~se~f~~~~v~a~~~~----------~~~~Fk~~y- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYL----TSEDFTNDFVKALRDN----------EMEKFKEKY- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEec----cHHHHHHHHHHHHHhh----------hHHHHHHhh-
Confidence 4678999999999999999999983 4444432222322 2334444554444321 123345544
Q ss_pred CCeEEEEEecCCCCCc-cccc-cccCcccC-CCCCcEEEEEccch---------hHhhhhCCCCcccCCCCChhhhHHHh
Q 035550 223 PKKFLLVLDDVWNENY-NDWD-RLRPPFEA-GAPGSKIIVTARNQ---------GVAAIMGTAPAYQLKKLSNDDCLSVF 290 (1385)
Q Consensus 223 ~~~~LlVlDdv~~~~~-~~~~-~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 290 (1385)
.-=++++||++.-.. +.|+ .+...|.. ...|-.||+|++.. .+.+.+...-++++.+.+.+.....+
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHH
Confidence 233888999954211 1122 22222221 12344899999642 33444555578999999999999999
Q ss_pred hhhccCcCCCCCchhHHHHHHHHHHhcCCCchHH
Q 035550 291 AQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAA 324 (1385)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 324 (1385)
.+++....-..++....-++.++.+-.+-+.-|+
T Consensus 254 ~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL 287 (408)
T COG0593 254 RKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGAL 287 (408)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHH
Confidence 8876544333333333333433333333333333
No 176
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.95 E-value=0.0049 Score=79.19 Aligned_cols=45 Identities=27% Similarity=0.412 Sum_probs=37.2
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
..++||+.++.++++.|.... ..-+.++|.+|+|||++|+.++..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999996542 234558999999999999999873
No 177
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.88 E-value=9.1e-05 Score=91.25 Aligned_cols=84 Identities=25% Similarity=0.311 Sum_probs=48.0
Q ss_pred cCCCCCccceEEecccCCccccchhhhhhccCcCCCCcccc-eeeccccccc-ccccccCCCCCCCCeEeccCCCCCCCC
Q 035550 1257 GFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLPASLT-SLWIFNFPNL-ERLSSSIVDLQNLTELKLHNCPKLKYF 1334 (1385)
Q Consensus 1257 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~-~L~l~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~l 1334 (1385)
.+..++.++.+.+.+|.. .... .+.+.+|+.+ ..+.........++.|+++.|..++.-
T Consensus 357 ~~~~~~~l~~~~l~~~~~-------------------~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~ 417 (482)
T KOG1947|consen 357 ILRSCPKLTDLSLSYCGI-------------------SDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDK 417 (482)
T ss_pred HHhcCCCcchhhhhhhhc-------------------cCcchHHHhcCCcccchHHHHHhccCCccceEecccCcccccc
Confidence 345667777777776520 0111 4556666666 333333333444888888888766543
Q ss_pred CCC--CC-CCccceeeecCChhhHHhhh
Q 035550 1335 PEK--GL-PSSLLQLQIVGCPLMKEKCR 1359 (1385)
Q Consensus 1335 ~~~--~~-~~sL~~L~i~~c~~l~~~~~ 1359 (1385)
.-. .. ...+..+++.+|+.+.....
T Consensus 418 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 418 GLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred chHHHhhhhhccccCCccCcccccchhh
Confidence 211 11 34577888888888775543
No 178
>PRK08118 topology modulation protein; Reviewed
Probab=96.84 E-value=0.0005 Score=69.40 Aligned_cols=34 Identities=38% Similarity=0.641 Sum_probs=27.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcccc-ccCCcEEE
Q 035550 146 VIPIIGMGGLGKTTLAQLVYNDKQVQ-DHFDLKAW 179 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~w 179 (1385)
.|.|+|++|+||||||+++++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999854433 45677776
No 179
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.81 E-value=0.0022 Score=67.49 Aligned_cols=35 Identities=31% Similarity=0.373 Sum_probs=28.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEe
Q 035550 146 VIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCV 182 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 182 (1385)
.++|+|..|.||||++..+.. .....|..+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 577999999999999999987 36667877766643
No 180
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.79 E-value=0.053 Score=60.49 Aligned_cols=178 Identities=12% Similarity=0.096 Sum_probs=97.7
Q ss_pred hHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCc---cccc----cCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 124 TEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDK---QVQD----HFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 124 ~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~---~~~~----~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
...+++...+... .-...+.++|+.|+||+++|+.++.-. .... .....-++......|...+
T Consensus 10 ~~~~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (319)
T PRK06090 10 PVWQNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI----- 79 (319)
T ss_pred HHHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE-----
Confidence 3445566666433 234678899999999999999886521 0000 0000000001111111000
Q ss_pred HHhcCCCCCCccCHHHHHHHHHhHc-----CCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccch-hHhhhh
Q 035550 197 LSIASDQIVDNHDLNKLQEELKKKL-----SPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQ-GVAAIM 270 (1385)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~ 270 (1385)
........-.++++.+ +.+.+ .+++=++|+|++..-+......+...+.....++.+|++|.+. .+...+
T Consensus 80 ---~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI 155 (319)
T PRK06090 80 ---KPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTI 155 (319)
T ss_pred ---ecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHH
Confidence 0000001122333332 22222 2445588999996555566666776666555667766666554 455444
Q ss_pred C-CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHH
Q 035550 271 G-TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 327 (1385)
Q Consensus 271 ~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 327 (1385)
. .-..+.+.+++.+++.+.+..... . .+..+++.++|.|+.+..+
T Consensus 156 ~SRCq~~~~~~~~~~~~~~~L~~~~~------~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 156 VSRCQQWVVTPPSTAQAMQWLKGQGI------T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HhcceeEeCCCCCHHHHHHHHHHcCC------c------hHHHHHHHcCCCHHHHHHH
Confidence 3 335789999999999998865420 1 1245788999999977655
No 181
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0023 Score=77.98 Aligned_cols=127 Identities=14% Similarity=0.242 Sum_probs=77.4
Q ss_pred CCeeeechhHHHHHHHHHhcCCc---CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHH
Q 035550 116 EAKVYGRETEKKEIVELLLRDDL---RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLT 192 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 192 (1385)
..+++|-++.++.+.+.+..... ..+....+...+|+.|||||-||++++.. .-+.=+..+-+++|+- .-
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSEy-----~E 562 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSEY-----ME 562 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHHH-----HH
Confidence 45799999999999999865432 12344567788999999999999998862 1111133344433331 11
Q ss_pred HHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeE-EEEEecCCCCCccccccccCcccCC
Q 035550 193 KSILLSIASDQIVDNHDLNKLQEELKKKLSPKKF-LLVLDDVWNENYNDWDRLRPPFEAG 251 (1385)
Q Consensus 193 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~~~~~~~~l~~~l~~~ 251 (1385)
+.-+..+.+.++ .....++ ...+.+..+.++| +|.||+|....++-++-+.+.+.++
T Consensus 563 kHsVSrLIGaPP-GYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 563 KHSVSRLIGAPP-GYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHHHhCCCC-CCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 222333434333 2222222 2334555667777 8889999777777777777766654
No 182
>PRK10536 hypothetical protein; Provisional
Probab=96.78 E-value=0.0048 Score=65.11 Aligned_cols=134 Identities=13% Similarity=0.134 Sum_probs=73.0
Q ss_pred eeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEe----CCC-----CCH
Q 035550 118 KVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCV----SDD-----FDV 188 (1385)
Q Consensus 118 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~----~~~-----~~~ 188 (1385)
.+.+|......+..++... .+|.+.|..|.|||+||.++..+.-..+.|+.++-+.- .+. -+.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCH
Confidence 3567888888888888432 48999999999999999998764222334543333211 110 011
Q ss_pred H----HHHHHHHHHhcCCCCCCccCHHHHHH--------HHHhHcCCCeE---EEEEecCCCCCccccccccCcccCCCC
Q 035550 189 I----RLTKSILLSIASDQIVDNHDLNKLQE--------ELKKKLSPKKF---LLVLDDVWNENYNDWDRLRPPFEAGAP 253 (1385)
Q Consensus 189 ~----~~~~~i~~~~~~~~~~~~~~~~~~~~--------~l~~~l~~~~~---LlVlDdv~~~~~~~~~~l~~~l~~~~~ 253 (1385)
. -.++-+...+..-- .....+.+.. .-..++++..+ +||+|++.+-+..+...+.. ..+.
T Consensus 128 ~eK~~p~~~pi~D~L~~~~--~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~lt---R~g~ 202 (262)
T PRK10536 128 AEKFAPYFRPVYDVLVRRL--GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLT---RLGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHHHHh--ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHh---hcCC
Confidence 1 11111211111100 0001111100 01234566655 99999997765544444443 4467
Q ss_pred CcEEEEEccch
Q 035550 254 GSKIIVTARNQ 264 (1385)
Q Consensus 254 gs~ilvTtR~~ 264 (1385)
+|++|+|--..
T Consensus 203 ~sk~v~~GD~~ 213 (262)
T PRK10536 203 NVTVIVNGDIT 213 (262)
T ss_pred CCEEEEeCChh
Confidence 89999986543
No 183
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0021 Score=75.78 Aligned_cols=166 Identities=18% Similarity=0.266 Sum_probs=91.2
Q ss_pred CCeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHH
Q 035550 116 EAKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSI 195 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 195 (1385)
+.+-+|.++-+++|++.|.-......-+.+++++||++|+|||.||+.+++ ...+.|- -++++.-.|..++-..-
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkfv---R~sLGGvrDEAEIRGHR 396 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFV---RISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEE---EEecCccccHHHhcccc
Confidence 456689999999999998643322334568999999999999999999998 4555552 23344433433221100
Q ss_pred HHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCC----------------ccccccccCccc-CCCCCcEEE
Q 035550 196 LLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNEN----------------YNDWDRLRPPFE-AGAPGSKII 258 (1385)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~~~l~~~l~-~~~~gs~il 258 (1385)
.+..+.. ...+.+.+++. +.+.-+++||.+..-. +++-..+...+. ..-.=|.|+
T Consensus 397 ------RTYIGam-PGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 397 ------RTYIGAM-PGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred ------ccccccC-ChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 0000111 12233333322 4566789999983211 011111111111 001124443
Q ss_pred -EEccc-hh-H-hhhhCCCCcccCCCCChhhhHHHhhhhc
Q 035550 259 -VTARN-QG-V-AAIMGTAPAYQLKKLSNDDCLSVFAQHS 294 (1385)
Q Consensus 259 -vTtR~-~~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~a 294 (1385)
|||-+ -+ + +..++...++++.+-+++|-.+.-+++.
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 44443 22 2 2223445789999999999888777664
No 184
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.76 E-value=0.021 Score=63.72 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=61.9
Q ss_pred CCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccc-hhHhhhhC-CCCcccCCCCChhhhHHHhhhhccCcCCC
Q 035550 223 PKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARN-QGVAAIMG-TAPAYQLKKLSNDDCLSVFAQHSLGTRDF 300 (1385)
Q Consensus 223 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 300 (1385)
+++-++|+|++..-+...-..+...+.....++.+|++|.+ ..+...+. .-..+.+.+++.+++.+.+....
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------ 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------ 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC------
Confidence 55668999999544444444555555544456766666664 34444432 23578899999999998886531
Q ss_pred CCchhHHHHHHHHHHhcCCCchHHHHHh
Q 035550 301 SSNKSLEEIGKKIVIKCNGLPLAAKTLG 328 (1385)
Q Consensus 301 ~~~~~~~~~~~~i~~~~~g~PLai~~~~ 328 (1385)
.+ ...+..++..++|.|+.+..+.
T Consensus 186 ~~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 VS----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CC----hHHHHHHHHHcCCCHHHHHHHh
Confidence 11 1225568999999998765544
No 185
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.75 E-value=0.00023 Score=87.66 Aligned_cols=213 Identities=24% Similarity=0.316 Sum_probs=103.2
Q ss_pred cccceeEEcccCcchh--hhhhcCCCCCCcEEeecCC-CCccccC----CCCCCccCcceEEeccccCcc-cccccC-CC
Q 035550 1138 SSLKSLVVWSCSKLES--IAERLDNNTSLETISIDSC-GNLVSFP----EGGLPCVKLRMLAITNCKRLE-ALPKGL-HN 1208 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~--~~~~l~~l~~L~~L~L~~n-~~l~~~~----~~~~~l~~L~~L~L~~n~~~~-~lp~~l-~~ 1208 (1385)
+.|+.|.+.+|..... +-.....++.|+.|++++| ......+ .....+++|+.|++++|.... ..-..+ ..
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 3555555555544443 3333455666666666652 2111111 122334666777777766322 111112 23
Q ss_pred CCccceeeccccCCCCC--CcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhc
Q 035550 1209 LTSLQELTIGIGGALPS--LEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRL 1286 (1385)
Q Consensus 1209 l~~L~~L~L~~n~~~~~--~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l 1286 (1385)
|++|+.|.+.+|..++. +......+++|++|++++|..+...... ....++++|+.|.+..+.. ...+++..+
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~--~~~~~c~~l~~l~~~~~~~---c~~l~~~~l 342 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLE--ALLKNCPNLRELKLLSLNG---CPSLTDLSL 342 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHH--HHHHhCcchhhhhhhhcCC---CccHHHHHH
Confidence 66777777666663211 1112234666777777777654322111 1134466666655544321 000111111
Q ss_pred cCcCCCC-cccceeecccccccccccccCCCCCCCC-eEeccCCCCCC-CCCCCCCC-CccceeeecCChhhH
Q 035550 1287 GTALPLP-ASLTSLWIFNFPNLERLSSSIVDLQNLT-ELKLHNCPKLK-YFPEKGLP-SSLLQLQIVGCPLMK 1355 (1385)
Q Consensus 1287 ~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~l~~L~-~L~l~~c~~l~-~l~~~~~~-~sL~~L~i~~c~~l~ 1355 (1385)
....... ..+..+.+.+|++++.+.-......... .+.+.+|++++ .+...... .+++.|+++.|..++
T Consensus 343 ~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t 415 (482)
T KOG1947|consen 343 SGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVT 415 (482)
T ss_pred HHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCcccc
Confidence 1222222 2566666666666665432221123333 57788888883 33221112 238999999998655
No 186
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.74 E-value=0.011 Score=60.29 Aligned_cols=123 Identities=24% Similarity=0.345 Sum_probs=72.2
Q ss_pred ccCCeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHH
Q 035550 114 VNEAKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTK 193 (1385)
Q Consensus 114 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 193 (1385)
+.-..++|.|...+.+++--..-- .+....-|.+||.-|+|||.|++++.+ .+....-. -|.|...
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~-------- 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE-------- 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH--------
Confidence 344578999999999887543221 112234577999999999999999988 33333322 2222221
Q ss_pred HHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCC-ccccccccCcccCC---CCCcEEEEEccch
Q 035550 194 SILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNEN-YNDWDRLRPPFEAG---APGSKIIVTARNQ 264 (1385)
Q Consensus 194 ~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-~~~~~~l~~~l~~~---~~gs~ilvTtR~~ 264 (1385)
+..+...+.+.++. ..+||.|..||+.-+. ...+..++..+..+ .+...++..|.++
T Consensus 123 ------------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 ------------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ------------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 11222333333333 3789999999994432 24566666666543 2334555555554
No 187
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.72 E-value=0.001 Score=82.27 Aligned_cols=108 Identities=19% Similarity=0.162 Sum_probs=77.7
Q ss_pred CCCceeEecccccccCCCCCcccccccccccCCceeEEEEcCcccccccccccCCccccEEecccccccccc--hhhhcc
Q 035550 498 DINHLRTFLPVTLSKSSCGHLARSILPKLFKLQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLP--ESVNKL 575 (1385)
Q Consensus 498 ~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP--~~i~~L 575 (1385)
-++.||+|.+.+.. .....+..-..++++|+.||+++++++.+ ..+++|++|++|.+++-.+..-+ ..+.+|
T Consensus 146 ~LPsL~sL~i~~~~-----~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L 219 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQ-----FDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNL 219 (699)
T ss_pred hCcccceEEecCce-----ecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence 46788888765432 11112222237899999999999999988 78999999999999998877543 567899
Q ss_pred CCccEEecCCCcch------hhhhhcccccCCCCeeecCCCC
Q 035550 576 YNLHTLLLEGCRRL------KKLCADMGNLIKLHHLDNLDTG 611 (1385)
Q Consensus 576 ~~L~~L~L~~~~~l------~~lp~~i~~L~~L~~L~l~~~~ 611 (1385)
++|++||+|..... ...-+.-..|++||.||.+++.
T Consensus 220 ~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 220 KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 99999999974321 1111222458999999999873
No 188
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.70 E-value=0.013 Score=66.74 Aligned_cols=163 Identities=9% Similarity=0.062 Sum_probs=86.7
Q ss_pred eee-chhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHH
Q 035550 119 VYG-RETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILL 197 (1385)
Q Consensus 119 ~vG-r~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 197 (1385)
++| -+..++.+...+.... -.....++|+.|+||||+|+.+.+..--....... .+.. -..-+.+..
T Consensus 7 i~~~q~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~----C~~c~~~~~ 74 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGT----CTNCKRIDS 74 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCc----CHHHHHHhc
Confidence 456 6667777777775432 34677899999999999999886521100000000 0000 000000000
Q ss_pred Hhc-----CCCCCCccCHHHHHHHHHhH----cCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccch-hHh
Q 035550 198 SIA-----SDQIVDNHDLNKLQEELKKK----LSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQ-GVA 267 (1385)
Q Consensus 198 ~~~-----~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~ 267 (1385)
.-. ..........+++.+.+... ..+.+=++|+|++..-+......+...+.....++.+|++|.+. .+.
T Consensus 75 ~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll 154 (329)
T PRK08058 75 GNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQIL 154 (329)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCc
Confidence 000 00000111223333322211 23455579999995555445556666666555677777777654 333
Q ss_pred hhhC-CCCcccCCCCChhhhHHHhhhh
Q 035550 268 AIMG-TAPAYQLKKLSNDDCLSVFAQH 293 (1385)
Q Consensus 268 ~~~~-~~~~~~l~~L~~~~~~~lf~~~ 293 (1385)
..+. ....+++.+++.++..+.+...
T Consensus 155 ~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 155 PTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 3332 3467999999999998888653
No 189
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.66 E-value=0.013 Score=58.84 Aligned_cols=136 Identities=14% Similarity=0.143 Sum_probs=74.4
Q ss_pred echhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCc---ccc---------------ccCCcEEEEEe
Q 035550 121 GRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDK---QVQ---------------DHFDLKAWTCV 182 (1385)
Q Consensus 121 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~---~~~---------------~~f~~~~wv~~ 182 (1385)
|-++..+.+...+.... -...+.++|..|+||+|+|..+++.. ... ....-..|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 45667777777775432 24567899999999999999887621 110 11122233322
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHc-----CCCeEEEEEecCCCCCccccccccCcccCCCCCcEE
Q 035550 183 SDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKL-----SPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKI 257 (1385)
Q Consensus 183 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 257 (1385)
.... .....+++. .+.+.+ .+++=++|+||+..-+.+.+..+...+.....++++
T Consensus 76 ~~~~-------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~f 135 (162)
T PF13177_consen 76 DKKK-------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYF 135 (162)
T ss_dssp TTSS-------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEE
T ss_pred cccc-------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEE
Confidence 2110 012233333 233332 245568999999766667777888777776778898
Q ss_pred EEEccchh-HhhhhC-CCCcccCCCC
Q 035550 258 IVTARNQG-VAAIMG-TAPAYQLKKL 281 (1385)
Q Consensus 258 lvTtR~~~-v~~~~~-~~~~~~l~~L 281 (1385)
|++|++.. +...+. ....+.+.++
T Consensus 136 iL~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 136 ILITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp EEEES-GGGS-HHHHTTSEEEEE---
T ss_pred EEEECChHHChHHHHhhceEEecCCC
Confidence 88888764 333332 2234555444
No 190
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.00046 Score=71.70 Aligned_cols=59 Identities=10% Similarity=0.013 Sum_probs=31.2
Q ss_pred ccccEEEeccCCCCC--cCcccccCCCCccEEEeccCCCcccccCc-cCccccceEEeecCC
Q 035550 972 CRLEYLRLSNCEGLV--KLPQSSLSLSSLREIEIYKCSSLVSFPEV-ALPSKLKKVKIRECD 1030 (1385)
Q Consensus 972 ~~L~~L~Ls~~~~l~--~l~~~~~~l~~L~~L~L~~~~~l~~~~~~-~~~~~L~~L~l~~~~ 1030 (1385)
+.++.+||.+|.+.. .+...+.++|.|+.|+|+.|+.-..+... ....+|++|-+.+..
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG 132 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC
Confidence 566667777665432 23334556677777777766433322221 223456666665544
No 191
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.60 E-value=0.017 Score=67.32 Aligned_cols=147 Identities=22% Similarity=0.304 Sum_probs=86.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCC-CCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCC
Q 035550 146 VIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD-FDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPK 224 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 224 (1385)
++.|.|+-++||||+++.+... ..+. .+.+..-+. .+..++ .+ ....+.+.-..+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l-~d------------------~~~~~~~~~~~~ 94 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIEL-LD------------------LLRAYIELKERE 94 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhH-HH------------------HHHHHHHhhccC
Confidence 9999999999999999777663 2222 444433221 111111 11 111111111127
Q ss_pred eEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchhHhh-----hh-CCCCcccCCCCChhhhHHHhhhhccCcC
Q 035550 225 KFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQGVAA-----IM-GTAPAYQLKKLSNDDCLSVFAQHSLGTR 298 (1385)
Q Consensus 225 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~-----~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~ 298 (1385)
+..++||.|.. ...|+.....+.+.+.. +|++|+-+..... .. +....+++.||+..|...+-...+.
T Consensus 95 ~~yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~~--- 168 (398)
T COG1373 95 KSYIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEIE--- 168 (398)
T ss_pred CceEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcccccc---
Confidence 78999999954 47899888878776665 8888887754432 22 3346789999999998765431110
Q ss_pred CCCCchhHHHHHHHHHHhcCCCchHHHHH
Q 035550 299 DFSSNKSLEEIGKKIVIKCNGLPLAAKTL 327 (1385)
Q Consensus 299 ~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 327 (1385)
. ... ...-+-.-..||.|-++..-
T Consensus 169 ---~-~~~-~~~f~~Yl~~GGfP~~v~~~ 192 (398)
T COG1373 169 ---P-SKL-ELLFEKYLETGGFPESVKAD 192 (398)
T ss_pred ---h-hHH-HHHHHHHHHhCCCcHHHhCc
Confidence 0 011 11222344568888877543
No 192
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.60 E-value=0.0065 Score=76.75 Aligned_cols=51 Identities=29% Similarity=0.416 Sum_probs=40.1
Q ss_pred CCeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 116 EAKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
+.+.+|.++.+++|+++|......+.....++.++|++|+||||+|+.++.
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999988642211223456899999999999999999987
No 193
>CHL00176 ftsH cell division protein; Validated
Probab=96.57 E-value=0.0074 Score=74.07 Aligned_cols=177 Identities=14% Similarity=0.227 Sum_probs=94.2
Q ss_pred CeeeechhHHHHHHHHH---hcCCc---CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHH
Q 035550 117 AKVYGRETEKKEIVELL---LRDDL---RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIR 190 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 190 (1385)
.+++|.++.++++.+.+ ..... -+....+-|.++|++|+|||++|++++... ... ++.++. .+
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~p-----~i~is~----s~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EVP-----FFSISG----SE 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC-----eeeccH----HH
Confidence 45788877666665544 22110 011223468899999999999999998732 111 222221 11
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCC----------cccc----ccccCcccC--CCCC
Q 035550 191 LTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNEN----------YNDW----DRLRPPFEA--GAPG 254 (1385)
Q Consensus 191 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~~----~~l~~~l~~--~~~g 254 (1385)
+.. ...+ .....+...+.+..+..+++|++||+..-. ...+ ..+...+.. ...+
T Consensus 252 f~~----~~~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 252 FVE----MFVG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HHH----Hhhh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 111 1100 112233444555556788999999993210 0111 122222211 2345
Q ss_pred cEEEEEccchhHhhh-h-C---CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCC
Q 035550 255 SKIIVTARNQGVAAI-M-G---TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNG 319 (1385)
Q Consensus 255 s~ilvTtR~~~v~~~-~-~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g 319 (1385)
..||.||...+.... + . -+..+.++..+.++-.++++.++.... ... ......+++.+.|
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~-~~~----d~~l~~lA~~t~G 386 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK-LSP----DVSLELIARRTPG 386 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc-cch----hHHHHHHHhcCCC
Confidence 567777766544332 1 1 135678888888888888888764321 111 1234557777777
No 194
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.57 E-value=0.0021 Score=71.55 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=41.5
Q ss_pred eeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 118 KVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 118 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
+++|.++.++++++++...........++++++|++|+||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999997643312345688999999999999999999874
No 195
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.56 E-value=0.0029 Score=62.51 Aligned_cols=103 Identities=25% Similarity=0.258 Sum_probs=74.6
Q ss_pred CCceeEEEEcCcccccccccccCCccccEEecccccccccchhhh-ccCCccEEecCCCcchhhhhh--cccccCCCCee
Q 035550 529 LQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLPESVN-KLYNLHTLLLEGCRRLKKLCA--DMGNLIKLHHL 605 (1385)
Q Consensus 529 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~-~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L 605 (1385)
+.....+||++|.+..++ .|..+..|.+|.|.+|+|+.+-+.+. -+++|++|.|.+| .+.++-+ .+..+++|++|
T Consensus 41 ~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCcccee
Confidence 345678899999888774 47788899999999999998877774 4567999999986 5555532 36778889999
Q ss_pred ecCCCCCcccccCC----CCcccccccccceEe
Q 035550 606 DNLDTGSLEEMPLG----IGKLTCLQTLCNFVV 634 (1385)
Q Consensus 606 ~l~~~~~~~~lp~~----i~~L~~L~~L~~~~~ 634 (1385)
.+-+| .....+.- +.++++|++|+...+
T Consensus 119 tll~N-pv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCC-chhcccCceeEEEEecCcceEeehhhh
Confidence 88888 34433321 667778887744333
No 196
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.55 E-value=0.0046 Score=72.41 Aligned_cols=189 Identities=16% Similarity=0.157 Sum_probs=107.0
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.++||-+.-++.|...+.... -...-...|+-|+||||+|+.+++-.--. -| ....+...-..-++|.
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~------~~-~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCE------NG-PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCC------CC-CCCCcchhhhhhHhhh
Confidence 356999999999999986542 23455678999999999999887621111 00 1111111111222222
Q ss_pred HHhcCC--C--CCCccCHHHHHHHHHhHc----CCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccch-hHh
Q 035550 197 LSIASD--Q--IVDNHDLNKLQEELKKKL----SPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQ-GVA 267 (1385)
Q Consensus 197 ~~~~~~--~--~~~~~~~~~~~~~l~~~l----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~ 267 (1385)
..-..+ . ......++++.+.+.+.. +++-=+.|+|.|+--+...|..+..-+.......+.|+.|.+. .+.
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 110000 0 001122333332222221 3444589999997777778888877776555566666666654 343
Q ss_pred hhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCc
Q 035550 268 AIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLP 321 (1385)
Q Consensus 268 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 321 (1385)
..+ .....|.++.++.++-...+...+-....... ++...-|++..+|..
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e----~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE----EDALSLIARAAEGSL 214 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC----HHHHHHHHHHcCCCh
Confidence 332 33468999999999988888777643332222 234444666666643
No 197
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.54 E-value=0.042 Score=65.04 Aligned_cols=206 Identities=18% Similarity=0.168 Sum_probs=116.9
Q ss_pred eeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCcc------ccccCCcEEEEEeCCCCCHHHH
Q 035550 118 KVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQ------VQDHFDLKAWTCVSDDFDVIRL 191 (1385)
Q Consensus 118 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~------~~~~f~~~~wv~~~~~~~~~~~ 191 (1385)
.+-+||.|..+|...+...-. .....+.+.|.|.+|.|||..+..|.+... -...|. .+.++.-.-....++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~-~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFIS-DQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred cccchhHHHHHHHHHHHhhcC-CCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 456899999999988865432 123456999999999999999999987321 112343 344555555679999
Q ss_pred HHHHHHHhcCCCCCCccCHHHHHHHHHh-HcCCCeEEEEEecC---CCCCccccccccCcccC-CCCCcEEEEEccc--h
Q 035550 192 TKSILLSIASDQIVDNHDLNKLQEELKK-KLSPKKFLLVLDDV---WNENYNDWDRLRPPFEA-GAPGSKIIVTARN--Q 264 (1385)
Q Consensus 192 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv---~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~--~ 264 (1385)
+..|..++.+.........+.+..++.. .-+.+.+++++|++ |...+ +-+...|.| ..++||++|-+=. .
T Consensus 475 Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q---dVlYn~fdWpt~~~sKLvvi~IaNTm 551 (767)
T KOG1514|consen 475 YEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ---DVLYNIFDWPTLKNSKLVVIAIANTM 551 (767)
T ss_pred HHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH---HHHHHHhcCCcCCCCceEEEEecccc
Confidence 9999999988654333333433333331 11356789999987 22111 223333444 3567886664421 1
Q ss_pred hH---------hhhhCCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHHhhh
Q 035550 265 GV---------AAIMGTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGL 330 (1385)
Q Consensus 265 ~v---------~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 330 (1385)
+. ...++ -..+...|-+.++-.+....+..+... -.....+-+|++|+.-.|-.-.|+.+.-++
T Consensus 552 dlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~-f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 552 DLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDA-FENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred cCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhh-cchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 11 11111 134555666666666665555433321 123334445555555555555555544333
No 198
>PRK08181 transposase; Validated
Probab=96.52 E-value=0.0035 Score=68.05 Aligned_cols=101 Identities=21% Similarity=0.171 Sum_probs=54.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPK 224 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 224 (1385)
.-+.++|++|+|||.||..+.+. .......++++.+ .++...+..... ....+..... +. +
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~~------~~~~~~~l~~----l~-~ 167 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVARR------ELQLESAIAK----LD-K 167 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHHh------CCcHHHHHHH----Hh-c
Confidence 35889999999999999999873 2223334556543 344554433221 1122222222 21 2
Q ss_pred eEEEEEecCCCCCccccc--cccCcccCCCCCcEEEEEccch
Q 035550 225 KFLLVLDDVWNENYNDWD--RLRPPFEAGAPGSKIIVTARNQ 264 (1385)
Q Consensus 225 ~~LlVlDdv~~~~~~~~~--~l~~~l~~~~~gs~ilvTtR~~ 264 (1385)
-=||||||+.......|. .+...+.....+..+||||...
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 349999999544333332 2333332211123588888754
No 199
>PRK07261 topology modulation protein; Provisional
Probab=96.50 E-value=0.0062 Score=61.92 Aligned_cols=64 Identities=23% Similarity=0.316 Sum_probs=39.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcccc-ccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCC
Q 035550 146 VIPIIGMGGLGKTTLAQLVYNDKQVQ-DHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPK 224 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 224 (1385)
.|.|+|++|+||||||+++....... -+.|...|-... ...+.++....+.+.+.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 59 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW----------------------QERDDDDMIADISNFLLKH 59 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc----------------------ccCCHHHHHHHHHHHHhCC
Confidence 48899999999999999987632211 134555552111 1123344555566666655
Q ss_pred eEEEEEecC
Q 035550 225 KFLLVLDDV 233 (1385)
Q Consensus 225 ~~LlVlDdv 233 (1385)
+ .|+|+.
T Consensus 60 ~--wIidg~ 66 (171)
T PRK07261 60 D--WIIDGN 66 (171)
T ss_pred C--EEEcCc
Confidence 5 577876
No 200
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.49 E-value=0.0073 Score=67.32 Aligned_cols=122 Identities=16% Similarity=0.176 Sum_probs=69.2
Q ss_pred echhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhc
Q 035550 121 GRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIA 200 (1385)
Q Consensus 121 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 200 (1385)
+|....+...+++..... ....+-+.++|..|+|||.||.++++.. ...-..+.++++. .++..+.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l--~~~g~~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANEL--AKKGVSSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEEEHH------HHHHHHHHHHh
Confidence 455555555666643221 1234578899999999999999999853 2222335566543 34555544432
Q ss_pred CCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCcccccc--ccCcc-cCC-CCCcEEEEEccc
Q 035550 201 SDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDR--LRPPF-EAG-APGSKIIVTARN 263 (1385)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~ilvTtR~ 263 (1385)
.. +.. +.+.. ++ +-=||||||+..+....|.. +...+ ... ..+-.+|+||--
T Consensus 205 ~~------~~~---~~l~~-l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 DG------SVK---EKIDA-VK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cC------cHH---HHHHH-hc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 11 112 22222 22 34589999997666667753 43333 221 234467778764
No 201
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.48 E-value=0.0075 Score=64.49 Aligned_cols=103 Identities=15% Similarity=0.176 Sum_probs=55.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSP 223 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 223 (1385)
...+.++|.+|+|||+||.++++. ....-..+++++ ..++...+-..... .....+. +.+.+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it------~~~l~~~l~~~~~~----~~~~~~~----~l~~l~- 161 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT------VADIMSAMKDTFSN----SETSEEQ----LLNDLS- 161 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE------HHHHHHHHHHHHhh----ccccHHH----HHHHhc-
Confidence 347889999999999999999984 322233455553 34444444333321 1112222 233344
Q ss_pred CeEEEEEecCCCCCcccccc--ccCcccCC-CCCcEEEEEccc
Q 035550 224 KKFLLVLDDVWNENYNDWDR--LRPPFEAG-APGSKIIVTARN 263 (1385)
Q Consensus 224 ~~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 263 (1385)
+.=+||+||+......+|+. +...+... ...-.+||||--
T Consensus 162 ~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 162 NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 33488899996554455653 22222211 112346677664
No 202
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.48 E-value=0.004 Score=61.54 Aligned_cols=106 Identities=19% Similarity=0.120 Sum_probs=58.4
Q ss_pred CCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeeccccCCCCC--CcccCCCCCCccee
Q 035550 1162 TSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIGGALPS--LEEEDGLPTNLQSL 1239 (1385)
Q Consensus 1162 ~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~--~~~~~~~~~~L~~L 1239 (1385)
.+...+||++|. +..++ .+..++.|.+|.|++|.+...-|.--.-+++|..|.+.+|.+... +. .+..+|.|++|
T Consensus 42 d~~d~iDLtdNd-l~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~-pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDND-LRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD-PLASCPKLEYL 118 (233)
T ss_pred cccceecccccc-hhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc-hhccCCcccee
Confidence 456667777776 33332 345566777777777765555554444556677777776664322 21 34456666666
Q ss_pred EecCCcchhhhhhhcCccCCCCCccceEEecc
Q 035550 1240 NIWGNMEIWKSMIERGRGFHRFSSLRYLLISG 1271 (1385)
Q Consensus 1240 ~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~ 1271 (1385)
.+-+|+...... -....+..+|+|+.||++.
T Consensus 119 tll~Npv~~k~~-YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKN-YRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccC-ceeEEEEecCcceEeehhh
Confidence 666665332211 1112345566666666655
No 203
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.46 E-value=0.044 Score=61.32 Aligned_cols=177 Identities=11% Similarity=0.059 Sum_probs=96.3
Q ss_pred HHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccC------Cc--EEEEEeCCCCCHHHHHHHHH
Q 035550 125 EKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF------DL--KAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 125 ~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f------~~--~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.-+.+...+..+ .-.....++|+.|+||+++|+.++.-.--.... .+ .-++..+...|...+.
T Consensus 10 ~~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~---- 80 (325)
T PRK06871 10 TYQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILE---- 80 (325)
T ss_pred HHHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEc----
Confidence 344556666432 224577799999999999999987521000000 00 0001111111211000
Q ss_pred HHhcCCCCCCccCHHHHHH---HHHhH-cCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccch-hHhhhhC
Q 035550 197 LSIASDQIVDNHDLNKLQE---ELKKK-LSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQ-GVAAIMG 271 (1385)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~---~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~ 271 (1385)
.. ....-.++++.+ .+... ..+++=++|+|++..-+......+...+.....++.+|++|.+. .+...+.
T Consensus 81 ----p~-~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~ 155 (325)
T PRK06871 81 ----PI-DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIY 155 (325)
T ss_pred ----cc-cCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHH
Confidence 00 001112333332 22211 13556688899996655556666666666555667777776654 4444432
Q ss_pred -CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHH
Q 035550 272 -TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAA 324 (1385)
Q Consensus 272 -~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 324 (1385)
.-..+.+.+++.+++.+.+...... . . ..+...++.++|.|+.+
T Consensus 156 SRC~~~~~~~~~~~~~~~~L~~~~~~-----~-~---~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 156 SRCQTWLIHPPEEQQALDWLQAQSSA-----E-I---SEILTALRINYGRPLLA 200 (325)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHhcc-----C-h---HHHHHHHHHcCCCHHHH
Confidence 2367999999999999888775311 1 1 12455788899999644
No 204
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.44 E-value=0.029 Score=61.68 Aligned_cols=57 Identities=19% Similarity=0.161 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHH
Q 035550 123 ETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLT 192 (1385)
Q Consensus 123 ~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 192 (1385)
.+-++++..++... .-|.+.|.+|+|||++|+.++. ... ...+++++....+..+++
T Consensus 8 ~~l~~~~l~~l~~g--------~~vLL~G~~GtGKT~lA~~la~--~lg---~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 8 KRVTSRALRYLKSG--------YPVHLRGPAGTGKTTLAMHVAR--KRD---RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHHhcC--------CeEEEEcCCCCCHHHHHHHHHH--HhC---CCEEEEeCCccCCHHHHh
Confidence 34455555555332 3566899999999999999986 222 234556666655544443
No 205
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.44 E-value=0.0096 Score=64.78 Aligned_cols=51 Identities=24% Similarity=0.152 Sum_probs=37.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccc----cCCcEEEEEeCCCCCHHHHH
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQD----HFDLKAWTCVSDDFDVIRLT 192 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~ 192 (1385)
+...++.|+|.+|+|||++|.+++-...... .-..++|++....++..++.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH
Confidence 4568999999999999999999874322221 13678999988877655443
No 206
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.41 E-value=0.013 Score=75.14 Aligned_cols=51 Identities=27% Similarity=0.444 Sum_probs=38.6
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
.+++|.++.+++|.+++......+....+++.++|++|+|||++|+.+++.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999988764321112223458999999999999999999983
No 207
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.41 E-value=0.0026 Score=78.68 Aligned_cols=138 Identities=22% Similarity=0.226 Sum_probs=81.0
Q ss_pred ccccEEeccccccc--ccchhh-hccCCccEEecCCCcc-hhhhhhcccccCCCCeeecCCCCCcccccCCCCccccccc
Q 035550 553 RYLRYLNLSLTEIR--TLPESV-NKLYNLHTLLLEGCRR-LKKLCADMGNLIKLHHLDNLDTGSLEEMPLGIGKLTCLQT 628 (1385)
Q Consensus 553 ~~L~~L~L~~~~i~--~lP~~i-~~L~~L~~L~L~~~~~-l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~ 628 (1385)
.+|++||++|...- .-|..+ ..|+.|++|.+++=.. -..+-.-..++++|+.||++++ .+..+ .|+++|++||+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 56777777775432 233444 4578888888876211 1222233567888888888888 56666 67888888888
Q ss_pred ccceEecCCCCcChhhhcccccccceeEEeccCCCCCcchhHHhhcCCCCCCceEEEEEccCCCCCCchhhhhHHhhccc
Q 035550 629 LCNFVVGKDSGSGIRELKLLTHLRGTLNISKLENVKDIGDAKEAQLDGKKNLKVLKFQWTQSTNDLSSREAETEKDVLVM 708 (1385)
Q Consensus 629 L~~~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 708 (1385)
|......-..... ...+..+++|+.|+++........ ......++.
T Consensus 200 L~mrnLe~e~~~~-----------------------------l~~LF~L~~L~vLDIS~~~~~~~~-----~ii~qYlec 245 (699)
T KOG3665|consen 200 LSMRNLEFESYQD-----------------------------LIDLFNLKKLRVLDISRDKNNDDT-----KIIEQYLEC 245 (699)
T ss_pred HhccCCCCCchhh-----------------------------HHHHhcccCCCeeeccccccccch-----HHHHHHHHh
Confidence 8322221111111 123555677777777765543221 122233455
Q ss_pred CCCCCCccceEEeccCCC
Q 035550 709 LKPHENLEQFCISGYEGK 726 (1385)
Q Consensus 709 l~~~~~L~~L~l~~~~~~ 726 (1385)
-..+|+|+.|+.+|....
T Consensus 246 ~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 246 GMVLPELRFLDCSGTDIN 263 (699)
T ss_pred cccCccccEEecCCcchh
Confidence 556788888888876543
No 208
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.37 E-value=0.0088 Score=64.44 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=35.6
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHH
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRL 191 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 191 (1385)
+...++.|+|.+|+|||++|.+++.. ....-..++|++.. .++..++
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 45689999999999999999999863 32334678899876 5555443
No 209
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.37 E-value=0.014 Score=65.34 Aligned_cols=103 Identities=18% Similarity=0.187 Sum_probs=62.7
Q ss_pred HHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCc-EEEEEeCCC-CCHHHHHHHHHHHhcCC
Q 035550 125 EKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDL-KAWTCVSDD-FDVIRLTKSILLSIASD 202 (1385)
Q Consensus 125 ~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~~~~~ 202 (1385)
-..++++.+..-. +...+.|+|.+|+|||||++++++... .++-+. ++|+-+.+. .++.++.+.+...+...
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~i~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAAVA-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 4445777775321 234668999999999999999887321 112233 467677665 46788888887766654
Q ss_pred CCCCccC----HHHHHHHHHhHc--CCCeEEEEEecC
Q 035550 203 QIVDNHD----LNKLQEELKKKL--SPKKFLLVLDDV 233 (1385)
Q Consensus 203 ~~~~~~~----~~~~~~~l~~~l--~~~~~LlVlDdv 233 (1385)
....... .......+-+++ ++++++||+|++
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 3211111 111111122222 589999999999
No 210
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.37 E-value=0.0056 Score=78.31 Aligned_cols=137 Identities=15% Similarity=0.174 Sum_probs=75.8
Q ss_pred CeeeechhHHHHHHHHHhcCCc---CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDL---RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTK 193 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 193 (1385)
..++|.++.++.+.+.+..... ..+....++.++|+.|+|||.+|+.++.. .-+.....+-++++.-.+ .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~-----~ 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQE-----A 638 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhh-----h
Confidence 5789999999999998854311 12234557899999999999999988762 211112222333322111 0
Q ss_pred HHHHHhcCCCCC--CccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccccccccCcccCCC-----------CCcEEEEE
Q 035550 194 SILLSIASDQIV--DNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGA-----------PGSKIIVT 260 (1385)
Q Consensus 194 ~i~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvT 260 (1385)
.-...+.+..+. +......+.+.+++ ...-+|+||++...+.+.++.+...+..+. ..+-||+|
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 111122222110 11111223344433 445699999996666666666655554432 34556677
Q ss_pred ccc
Q 035550 261 ARN 263 (1385)
Q Consensus 261 tR~ 263 (1385)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 654
No 211
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.017 Score=62.66 Aligned_cols=188 Identities=16% Similarity=0.166 Sum_probs=103.2
Q ss_pred eeeechhHHHHHHHHHhcCCc-------CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHH
Q 035550 118 KVYGRETEKKEIVELLLRDDL-------RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIR 190 (1385)
Q Consensus 118 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 190 (1385)
++=|-++.+++|.+...-+-. -+-...+=|.++|++|.|||-||++|++. ....| +.+..
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----Irvvg------ 218 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVG------ 218 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEecc------
Confidence 455788888888887643211 02234566889999999999999999993 44444 22222
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHHHhHcC-CCeEEEEEecCCCCC--------cc------ccccccCcccCC--CC
Q 035550 191 LTKSILLSIASDQIVDNHDLNKLQEELKKKLS-PKKFLLVLDDVWNEN--------YN------DWDRLRPPFEAG--AP 253 (1385)
Q Consensus 191 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~--------~~------~~~~l~~~l~~~--~~ 253 (1385)
.++++...++. ..++..+.+.-+ ..+..|.+|.+..-. .. ..-++...+..+ ..
T Consensus 219 --SElVqKYiGEG-------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 219 --SELVQKYIGEG-------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred --HHHHHHHhccc-------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 12222222211 123334444333 568889999882210 00 011122333322 23
Q ss_pred CcEEEEEccchhHhhhh----C-CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCc----hHH
Q 035550 254 GSKIIVTARNQGVAAIM----G-TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLP----LAA 324 (1385)
Q Consensus 254 gs~ilvTtR~~~v~~~~----~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P----Lai 324 (1385)
.-|||.+|-..++.... + -+..++++.-+.+.-.+.|+-|+-.-. ....-+++. +++.|.|.- -|+
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~-l~~dvd~e~----la~~~~g~sGAdlkai 364 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMN-LADDVDLEL----LARLTEGFSGADLKAI 364 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhcc-CccCcCHHH----HHHhcCCCchHHHHHH
Confidence 46899988877665432 1 246788885555556667877764332 223334555 555555543 445
Q ss_pred HHHhhhhc
Q 035550 325 KTLGGLLR 332 (1385)
Q Consensus 325 ~~~~~~l~ 332 (1385)
.+=|++++
T Consensus 365 ctEAGm~A 372 (406)
T COG1222 365 CTEAGMFA 372 (406)
T ss_pred HHHHhHHH
Confidence 55555553
No 212
>PRK06526 transposase; Provisional
Probab=96.36 E-value=0.0039 Score=67.46 Aligned_cols=100 Identities=21% Similarity=0.159 Sum_probs=51.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPK 224 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 224 (1385)
.-+.++|++|+|||+||..+.... ....+ .+.|+ +..++...+...... .. +...+.+. .+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a-~~~g~-~v~f~------t~~~l~~~l~~~~~~------~~---~~~~l~~l--~~ 159 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRA-CQAGH-RVLFA------TAAQWVARLAAAHHA------GR---LQAELVKL--GR 159 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHH-HHCCC-chhhh------hHHHHHHHHHHHHhc------Cc---HHHHHHHh--cc
Confidence 458899999999999999998742 12222 23332 233344444322110 11 22223332 23
Q ss_pred eEEEEEecCCCCCccccc--cccCcccC-CCCCcEEEEEccch
Q 035550 225 KFLLVLDDVWNENYNDWD--RLRPPFEA-GAPGSKIIVTARNQ 264 (1385)
Q Consensus 225 ~~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~ilvTtR~~ 264 (1385)
.-+||+||+.......|. .+...+.. ...++ +|+||...
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 458999999543222222 22232221 12343 88888764
No 213
>PRK09183 transposase/IS protein; Provisional
Probab=96.35 E-value=0.0066 Score=66.22 Aligned_cols=101 Identities=18% Similarity=0.201 Sum_probs=51.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPK 224 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 224 (1385)
..+.|+|++|+|||+||..+..... ... ..+.++. ..++...+...... .. +...+.+.+ .+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~-~~G-~~v~~~~------~~~l~~~l~~a~~~------~~---~~~~~~~~~-~~ 164 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV-RAG-IKVRFTT------AADLLLQLSTAQRQ------GR---YKTTLQRGV-MA 164 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH-HcC-CeEEEEe------HHHHHHHHHHHHHC------Cc---HHHHHHHHh-cC
Confidence 4677999999999999999976321 122 2233433 22333333222111 11 222233322 34
Q ss_pred eEEEEEecCCCCCccccc--cccCcccCC-CCCcEEEEEccch
Q 035550 225 KFLLVLDDVWNENYNDWD--RLRPPFEAG-APGSKIIVTARNQ 264 (1385)
Q Consensus 225 ~~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTtR~~ 264 (1385)
.-++|+||+.......+. .+...+... ..++ +|+||...
T Consensus 165 ~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 165 PRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred CCEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 459999999643333332 233323221 2344 78888753
No 214
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.32 E-value=0.01 Score=76.63 Aligned_cols=137 Identities=16% Similarity=0.220 Sum_probs=77.0
Q ss_pred CeeeechhHHHHHHHHHhcCCc---CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDL---RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTK 193 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 193 (1385)
..++|.+..++.+...+..... ..+....++.++|+.|+|||++|+.+... ....-...+.++++.-.+... .
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~-~- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS-V- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch-H-
Confidence 4689999999999999875321 01122457889999999999999999873 211122334444443222111 1
Q ss_pred HHHHHhcCCCCC--CccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccccccccCcccCC-----------CCCcEEEEE
Q 035550 194 SILLSIASDQIV--DNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPFEAG-----------APGSKIIVT 260 (1385)
Q Consensus 194 ~i~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvT 260 (1385)
..+.+..+. .......+...++. ....+|+||++.....+.+..+...+..+ -..+-||+|
T Consensus 641 ---~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 641 ---ARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred ---HHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 112121110 11112233333332 22348999999776666677666655433 123447777
Q ss_pred ccc
Q 035550 261 ARN 263 (1385)
Q Consensus 261 tR~ 263 (1385)
|..
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 764
No 215
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.31 E-value=0.0011 Score=67.91 Aligned_cols=40 Identities=20% Similarity=0.327 Sum_probs=19.9
Q ss_pred CCCccCcceEEeccccCcccccc----cCCCCCccceeeccccC
Q 035550 1182 GLPCVKLRMLAITNCKRLEALPK----GLHNLTSLQELTIGIGG 1221 (1385)
Q Consensus 1182 ~~~l~~L~~L~L~~n~~~~~lp~----~l~~l~~L~~L~L~~n~ 1221 (1385)
+..|++|+..+||+|.+-...|+ .+++-+.|.+|.+++|.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 33455555555555554433332 23444555555555444
No 216
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.29 E-value=0.024 Score=68.83 Aligned_cols=179 Identities=12% Similarity=0.165 Sum_probs=91.6
Q ss_pred CCeeeechhHHHHHHHHHh---cCCc---CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHH
Q 035550 116 EAKVYGRETEKKEIVELLL---RDDL---RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVI 189 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 189 (1385)
-.+++|.++.++++.+++. .... .+....+-+.++|++|+|||++|+.+++.. ... ++.++. .
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~----~ 122 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISG----S 122 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccH----H
Confidence 3467898877776665443 1100 011223458899999999999999999742 112 222221 1
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCC----------cccccc----ccCcccC--CCC
Q 035550 190 RLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNEN----------YNDWDR----LRPPFEA--GAP 253 (1385)
Q Consensus 190 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~~~~----l~~~l~~--~~~ 253 (1385)
.+.. ...+ .....+.+.+.......+.+|++||+..-. ...+.. +...+.. ...
T Consensus 123 ~~~~----~~~g------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 123 DFVE----MFVG------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HHHH----HHhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 1111 1111 112233344444445677899999983210 001111 1111111 123
Q ss_pred CcEEEEEccchhHhhh-h----CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCC
Q 035550 254 GSKIIVTARNQGVAAI-M----GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGL 320 (1385)
Q Consensus 254 gs~ilvTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 320 (1385)
+..||.||...+.... + .-+..++++..+.++-.+++..+...... ..... ...+++.+.|.
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~~----l~~la~~t~G~ 259 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDVD----LKAVARRTPGF 259 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccchh----HHHHHHhCCCC
Confidence 4456667765432221 1 12356888888888888888876532211 11112 23577777763
No 217
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.27 E-value=0.0077 Score=61.92 Aligned_cols=131 Identities=19% Similarity=0.200 Sum_probs=64.2
Q ss_pred echhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCC--CC----HHH----
Q 035550 121 GRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD--FD----VIR---- 190 (1385)
Q Consensus 121 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~----~~~---- 190 (1385)
.+..+-...++.|.. ..+|.+.|++|.|||.||.+.+-+.-..+.|+.++++.-.-+ .+ +-.
T Consensus 4 p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 455666667777752 358999999999999999888765444577887777642211 00 000
Q ss_pred ---HHHHHHHHhcCCCCCCccCHHHHHHH------HHhHcCCC---eEEEEEecCCCCCccccccccCcccCCCCCcEEE
Q 035550 191 ---LTKSILLSIASDQIVDNHDLNKLQEE------LKKKLSPK---KFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKII 258 (1385)
Q Consensus 191 ---~~~~i~~~~~~~~~~~~~~~~~~~~~------l~~~l~~~---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 258 (1385)
...-+...+..-. .....+.+.+. -..+++++ ..+||+|++.+-+..++..+.... +.|||||
T Consensus 76 ~~p~~~p~~d~l~~~~--~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii 150 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF--GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKII 150 (205)
T ss_dssp --TTTHHHHHHHTTTS---TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEE
T ss_pred HHHHHHHHHHHHHHHh--ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEE
Confidence 0111111111100 11122222210 01234454 459999999887777777765544 6789999
Q ss_pred EEccch
Q 035550 259 VTARNQ 264 (1385)
Q Consensus 259 vTtR~~ 264 (1385)
++--..
T Consensus 151 ~~GD~~ 156 (205)
T PF02562_consen 151 ITGDPS 156 (205)
T ss_dssp EEE---
T ss_pred EecCce
Confidence 986554
No 218
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.26 E-value=0.011 Score=62.97 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=37.2
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHH
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTK 193 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 193 (1385)
+..+++.|+|.+|+|||++|.+++.. ....-..++|++... ++..++.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 45689999999999999999998863 333456789998865 66555444
No 219
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.21 E-value=0.012 Score=75.68 Aligned_cols=123 Identities=15% Similarity=0.193 Sum_probs=67.2
Q ss_pred CeeeechhHHHHHHHHHhcCCc---CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDL---RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTK 193 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 193 (1385)
..++|.+..++.+...+..... ..+....++.++|+.|+|||++|+.+++. ....-...+.+.++.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~---- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-K---- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-h----
Confidence 4689999999999988864321 01122357889999999999999999862 211112334444433211 1
Q ss_pred HHHHHhcCCCCC--CccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccccccccCccc
Q 035550 194 SILLSIASDQIV--DNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPFE 249 (1385)
Q Consensus 194 ~i~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~ 249 (1385)
.....+.+..+. .......+...++. ...-+|+|||+...+...+..+...+.
T Consensus 641 ~~~~~LiG~~pgy~g~~~~g~l~~~v~~---~p~~vLllDEieka~~~v~~~Ll~ile 695 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEEGGYLTEAVRR---RPYSVILLDEVEKAHPDVFNILLQVLD 695 (857)
T ss_pred hhHHHHhCCCCcccccchhHHHHHHHHh---CCCCeEEEeehhhCCHHHHHHHHHHHh
Confidence 112222222211 11111222222221 223599999996656666666655553
No 220
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.18 E-value=0.0038 Score=63.66 Aligned_cols=100 Identities=21% Similarity=0.258 Sum_probs=49.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPK 224 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 224 (1385)
.-+.++|..|+|||.||.++.+. ...+=..+.|+.+ .+++..+ ..... ....+...+. +.+
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~~------~~L~~~l----~~~~~--~~~~~~~~~~----l~~- 108 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFITA------SDLLDEL----KQSRS--DGSYEELLKR----LKR- 108 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEH------HHHHHHH----HCCHC--CTTHCHHHHH----HHT-
T ss_pred eEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEeec------Cceeccc----ccccc--ccchhhhcCc----ccc-
Confidence 46889999999999999999874 2222234566643 3344443 22211 1122222222 222
Q ss_pred eEEEEEecCCCCCcccccc--ccCcccCC-CCCcEEEEEccch
Q 035550 225 KFLLVLDDVWNENYNDWDR--LRPPFEAG-APGSKIIVTARNQ 264 (1385)
Q Consensus 225 ~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~~ 264 (1385)
-=||||||+-.....+|.. +...+... .++ .+||||.-.
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 2478899996654445442 11111111 223 577888743
No 221
>PRK06921 hypothetical protein; Provisional
Probab=96.16 E-value=0.01 Score=64.84 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=27.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccc-CCcEEEEEe
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDH-FDLKAWTCV 182 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~ 182 (1385)
...+.++|..|+|||+||.++++. +... -..++++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 457889999999999999999984 3332 344566654
No 222
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.08 E-value=0.015 Score=74.05 Aligned_cols=122 Identities=18% Similarity=0.204 Sum_probs=68.9
Q ss_pred CeeeechhHHHHHHHHHhcCCc---CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDL---RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTK 193 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 193 (1385)
..++|.++.++.+...+..... ..+....++.++|+.|+|||+||+.++.. . +...+.+++++-.+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhccc---
Confidence 4688999999999888764211 01123456889999999999999999873 2 23345555544222111
Q ss_pred HHHHHhcCCCC-CCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccccccccCcccC
Q 035550 194 SILLSIASDQI-VDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPFEA 250 (1385)
Q Consensus 194 ~i~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~ 250 (1385)
+..-++.... ........+.+.++. ...-+++||++.....+.+..+...+..
T Consensus 526 -~~~lig~~~gyvg~~~~~~l~~~~~~---~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 526 -VSRLIGAPPGYVGFEQGGLLTEAVRK---HPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred -HHHHhcCCCCCcccchhhHHHHHHHh---CCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 1111111110 011122223333331 2345999999976666666666665543
No 223
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.0094 Score=70.05 Aligned_cols=105 Identities=25% Similarity=0.345 Sum_probs=66.4
Q ss_pred CCeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHH
Q 035550 116 EAKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSI 195 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 195 (1385)
+.+-+|+++-+++|++.+.-..-++..+..+++.+|++|||||.+|+.++. ...+.|. -++++.-.|..+|-..-
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFf---RfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFF---RFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceE---EEeccccccHHhhcccc
Confidence 455689999999999998765544566789999999999999999999997 4444442 24455544444331110
Q ss_pred HHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecC
Q 035550 196 LLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDV 233 (1385)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv 233 (1385)
..... .-...+++.++.. +...-|+.+|.|
T Consensus 485 ------RTYVG-AMPGkiIq~LK~v-~t~NPliLiDEv 514 (906)
T KOG2004|consen 485 ------RTYVG-AMPGKIIQCLKKV-KTENPLILIDEV 514 (906)
T ss_pred ------eeeec-cCChHHHHHHHhh-CCCCceEEeehh
Confidence 00001 1122334444433 345568889988
No 224
>PRK12377 putative replication protein; Provisional
Probab=96.04 E-value=0.024 Score=60.83 Aligned_cols=101 Identities=19% Similarity=0.127 Sum_probs=55.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPK 224 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 224 (1385)
..+.++|.+|+|||+||.++++. .......++++++. +++..+-...... ..... +.+.+ .+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~~-----~~~~~----~l~~l-~~ 163 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDNG-----QSGEK----FLQEL-CK 163 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhcc-----chHHH----HHHHh-cC
Confidence 57889999999999999999984 33334446666543 3444443332211 11111 22222 34
Q ss_pred eEEEEEecCCCCCcccccc--ccCcccCC-CCCcEEEEEccc
Q 035550 225 KFLLVLDDVWNENYNDWDR--LRPPFEAG-APGSKIIVTARN 263 (1385)
Q Consensus 225 ~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 263 (1385)
-=||||||+.......|+. +...+... ...--+||||-.
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5589999995443344542 22222221 122236777663
No 225
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.01 E-value=0.12 Score=58.68 Aligned_cols=181 Identities=15% Similarity=0.101 Sum_probs=98.2
Q ss_pred hHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCc---cccc-----cCCcEEEEEeCCCCCHHHHHHHH
Q 035550 124 TEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDK---QVQD-----HFDLKAWTCVSDDFDVIRLTKSI 195 (1385)
Q Consensus 124 ~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~---~~~~-----~f~~~~wv~~~~~~~~~~~~~~i 195 (1385)
..-+++...+..+ .-...+.+.|+.|+||+++|..++.-. .... .....-++......|+..+.
T Consensus 9 ~~~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~--- 80 (334)
T PRK07993 9 PDYEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT--- 80 (334)
T ss_pred HHHHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe---
Confidence 3445666666433 234678899999999999999876521 0000 00000011111112211100
Q ss_pred HHHhcCCCCCCccCHHHHHHHHHhHc-----CCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccc-hhHhhh
Q 035550 196 LLSIASDQIVDNHDLNKLQEELKKKL-----SPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARN-QGVAAI 269 (1385)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~ 269 (1385)
.+.....-.++++.+ +.+.+ .+++=++|+|++..-+......+...+.....++.+|++|.+ ..+...
T Consensus 81 -----p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpT 154 (334)
T PRK07993 81 -----PEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLAT 154 (334)
T ss_pred -----cccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHH
Confidence 000001122333333 22222 356668999999555555556666666555556676666665 445544
Q ss_pred hC-CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHH
Q 035550 270 MG-TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 327 (1385)
Q Consensus 270 ~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 327 (1385)
+. .-..+.+.+++.+++.+.+.... + .+ .+.+..+++.++|.|..+..+
T Consensus 155 IrSRCq~~~~~~~~~~~~~~~L~~~~-~----~~----~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 155 LRSRCRLHYLAPPPEQYALTWLSREV-T----MS----QDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred HHhccccccCCCCCHHHHHHHHHHcc-C----CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 32 23578999999999988886542 1 11 123567899999999654433
No 226
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.94 E-value=0.0034 Score=38.44 Aligned_cols=18 Identities=39% Similarity=0.715 Sum_probs=7.7
Q ss_pred ccEEecccccccccchhh
Q 035550 555 LRYLNLSLTEIRTLPESV 572 (1385)
Q Consensus 555 L~~L~L~~~~i~~lP~~i 572 (1385)
|++|||++|+|+.+|++|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 344444444444444333
No 227
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.93 E-value=0.018 Score=74.33 Aligned_cols=137 Identities=15% Similarity=0.225 Sum_probs=74.8
Q ss_pred CeeeechhHHHHHHHHHhcCCc---CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDL---RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTK 193 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 193 (1385)
..++|-++.++.+...+..... ..+.....+.++|+.|+|||+||+.+++. .-..-...+-+..+.-.+...+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~~- 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTVS- 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccHH-
Confidence 5689999999999888853221 01222446678999999999999999862 21111223344444322211111
Q ss_pred HHHHHhcCCC-CCCccCHHHHHHHHHhHcCCCe-EEEEEecCCCCCccccccccCcccCC-----------CCCcEEEEE
Q 035550 194 SILLSIASDQ-IVDNHDLNKLQEELKKKLSPKK-FLLVLDDVWNENYNDWDRLRPPFEAG-----------APGSKIIVT 260 (1385)
Q Consensus 194 ~i~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~-~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvT 260 (1385)
.+ ++... .........+ .+.++.++ -++++|++...+.+.+..+...+..+ -..+-||+|
T Consensus 586 ~l---~g~~~gyvg~~~~~~l----~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 586 KL---IGSPPGYVGYNEGGQL----TEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred Hh---cCCCCcccCcCccchH----HHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 11 11111 0011112223 33344444 58999999766666666666655432 134556667
Q ss_pred ccc
Q 035550 261 ARN 263 (1385)
Q Consensus 261 tR~ 263 (1385)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 664
No 228
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.92 E-value=0.0049 Score=58.87 Aligned_cols=21 Identities=48% Similarity=0.532 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 035550 146 VIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
||+|+|++|+||||+|+++.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 229
>PRK04296 thymidine kinase; Provisional
Probab=95.89 E-value=0.0093 Score=61.83 Aligned_cols=114 Identities=11% Similarity=-0.030 Sum_probs=61.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHHHHhHcCC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIV-DNHDLNKLQEELKKKLSP 223 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~l~~~l~~ 223 (1385)
.++.|+|..|.||||+|..++.. ...+-..++.+. ..++.......++.+++..... .....+++.+.+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 57889999999999999888873 333333333332 1122222233444555422110 12234455555555 333
Q ss_pred CeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchh
Q 035550 224 KKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQG 265 (1385)
Q Consensus 224 ~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 265 (1385)
+.-+||+|.+..-+.++..++...+ ...|..|++|.++.+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 4458999999332112122222222 246788999998854
No 230
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.00062 Score=70.05 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=43.9
Q ss_pred ceeEEEEcCcccccccccccCCccccEEecccccccccchhhhccCCccEEecCCCcchhhhh--hcccccCCCCeeecC
Q 035550 531 RLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLC--ADMGNLIKLHHLDNL 608 (1385)
Q Consensus 531 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~ 608 (1385)
+.+.|++.||.++.| +...++..|++|.|+-|+|+.| ..+..+++|+.|.|+.| .+..+- ..+.+|++|+.|.|.
T Consensus 20 ~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhhc
Confidence 334444444444433 1223344444444444444444 23444444444444443 222221 124555666666666
Q ss_pred CCCCcccccCC-----CCcccccccccce
Q 035550 609 DTGSLEEMPLG-----IGKLTCLQTLCNF 632 (1385)
Q Consensus 609 ~~~~~~~lp~~-----i~~L~~L~~L~~~ 632 (1385)
.|...+.-+.. +.-|++|+.|++.
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhccCc
Confidence 55433333322 3445555555443
No 231
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.87 E-value=0.031 Score=57.41 Aligned_cols=156 Identities=18% Similarity=0.203 Sum_probs=85.1
Q ss_pred CeeeechhHHHH---HHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHH
Q 035550 117 AKVYGRETEKKE---IVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTK 193 (1385)
Q Consensus 117 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 193 (1385)
.++||.++.+.+ |++.|..++.-++-..+-|..+|++|.|||.+|+++++...+ .| +-|.. .+
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p~---l~vka---------t~ 186 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL---LLVKA---------TE 186 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--ce---EEech---------HH
Confidence 468898876654 556665544334456788999999999999999999995432 22 11211 11
Q ss_pred HHHHHhcCCCCCCccCHHHHHHHHHh-HcCCCeEEEEEecCCCCC----c--------cccccccCcccC--CCCCcEEE
Q 035550 194 SILLSIASDQIVDNHDLNKLQEELKK-KLSPKKFLLVLDDVWNEN----Y--------NDWDRLRPPFEA--GAPGSKII 258 (1385)
Q Consensus 194 ~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~----~--------~~~~~l~~~l~~--~~~gs~il 258 (1385)
-|-+.++ +.......+.+ .-+.-++++.+|.+.--. + +....+...+.. .+.|...|
T Consensus 187 liGehVG--------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 187 LIGEHVG--------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred HHHHHhh--------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 1111211 11111222222 223568999999872110 0 011112222221 24566666
Q ss_pred EEccchhHhhhhC-C--CCcccCCCCChhhhHHHhhhhc
Q 035550 259 VTARNQGVAAIMG-T--APAYQLKKLSNDDCLSVFAQHS 294 (1385)
Q Consensus 259 vTtR~~~v~~~~~-~--~~~~~l~~L~~~~~~~lf~~~a 294 (1385)
..|.+.+.....- . ...++..--+++|-.+++..++
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 6776665544321 1 2346666667888888888776
No 232
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.83 E-value=0.046 Score=58.97 Aligned_cols=89 Identities=19% Similarity=0.114 Sum_probs=54.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccC------CcEEEEEeCCCCCHHHHHHHHHHHhcCCCC--------CCc
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF------DLKAWTCVSDDFDVIRLTKSILLSIASDQI--------VDN 207 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~--------~~~ 207 (1385)
+...++.|+|.+|+|||++|.+++... ...- ..++|+.....++..++. ++......... ...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 456799999999999999999987532 1222 567899887777765543 33333221100 012
Q ss_pred cCHHHHHHHHHhHcC----CCeEEEEEecC
Q 035550 208 HDLNKLQEELKKKLS----PKKFLLVLDDV 233 (1385)
Q Consensus 208 ~~~~~~~~~l~~~l~----~~~~LlVlDdv 233 (1385)
.+.+++...+.+... .+.-++|+|.+
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsi 123 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSV 123 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 344555555544432 34458999987
No 233
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.80 E-value=0.0033 Score=61.79 Aligned_cols=86 Identities=23% Similarity=0.130 Sum_probs=46.0
Q ss_pred EEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeE
Q 035550 147 IPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKF 226 (1385)
Q Consensus 147 v~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 226 (1385)
|.++|.+|+|||+||+.+++. .. ....-+.++...+..++....--.-+. .......+...+ .+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~---~~~~~i~~~~~~~~~dl~g~~~~~~~~----~~~~~~~l~~a~-----~~~~ 67 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LG---RPVIRINCSSDTTEEDLIGSYDPSNGQ----FEFKDGPLVRAM-----RKGG 67 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HT---CEEEEEE-TTTSTHHHHHCEEET-TTT----TCEEE-CCCTTH-----HEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hh---cceEEEEeccccccccceeeeeecccc----cccccccccccc-----ccee
Confidence 678999999999999999872 21 123346677777766555433211000 000000111111 1788
Q ss_pred EEEEecCCCCCccccccccC
Q 035550 227 LLVLDDVWNENYNDWDRLRP 246 (1385)
Q Consensus 227 LlVlDdv~~~~~~~~~~l~~ 246 (1385)
++|||++.......++.+..
T Consensus 68 il~lDEin~a~~~v~~~L~~ 87 (139)
T PF07728_consen 68 ILVLDEINRAPPEVLESLLS 87 (139)
T ss_dssp EEEESSCGG--HHHHHTTHH
T ss_pred EEEECCcccCCHHHHHHHHH
Confidence 99999996544444444433
No 234
>PRK06696 uridine kinase; Validated
Probab=95.80 E-value=0.011 Score=63.42 Aligned_cols=43 Identities=28% Similarity=0.256 Sum_probs=35.3
Q ss_pred echhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 121 GRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 121 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.|++-+++|.+.+.... .+...+|+|.|.+|+||||+|+++..
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 37778888888886532 24578999999999999999999987
No 235
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.76 E-value=0.0066 Score=68.15 Aligned_cols=102 Identities=18% Similarity=0.233 Sum_probs=53.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPK 224 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 224 (1385)
.-+.++|..|+|||+||.++++. ....-..++++++.. ++..+..... .. ..+... .+ +.+.+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~~~------l~~~l~~~~~-~~---~~~~~~---~~-~~l~~- 246 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTADE------LIEILREIRF-NN---DKELEE---VY-DLLIN- 246 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEHHH------HHHHHHHHHh-cc---chhHHH---HH-HHhcc-
Confidence 56889999999999999999984 222223466665432 3333322111 10 111111 12 22222
Q ss_pred eEEEEEecCCCCCcccccc--ccCcccCC-CCCcEEEEEccc
Q 035550 225 KFLLVLDDVWNENYNDWDR--LRPPFEAG-APGSKIIVTARN 263 (1385)
Q Consensus 225 ~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 263 (1385)
-=||||||+..+....|.. +...+... ..+-.+||||..
T Consensus 247 ~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 247 CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 2389999996554344432 32222211 224458888874
No 236
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.75 E-value=0.12 Score=58.39 Aligned_cols=94 Identities=15% Similarity=0.216 Sum_probs=62.5
Q ss_pred CCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccc-hhHhhhhC-CCCcccCCCCChhhhHHHhhhhccCcCCC
Q 035550 223 PKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARN-QGVAAIMG-TAPAYQLKKLSNDDCLSVFAQHSLGTRDF 300 (1385)
Q Consensus 223 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 300 (1385)
+++=++|+|++..-+...+..+...+.....++.+|++|.+ ..+...+. .-..+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~--~--- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG--V--- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC--C---
Confidence 45558889999666666777777777665566766655554 44444432 23678999999999999887642 1
Q ss_pred CCchhHHHHHHHHHHhcCCCchHHHHHh
Q 035550 301 SSNKSLEEIGKKIVIKCNGLPLAAKTLG 328 (1385)
Q Consensus 301 ~~~~~~~~~~~~i~~~~~g~PLai~~~~ 328 (1385)
. + ...++..++|.|..+..+.
T Consensus 206 -~-~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 -A-D-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred -C-h-----HHHHHHHcCCCHHHHHHHH
Confidence 1 1 1225778899997655443
No 237
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.75 E-value=0.013 Score=59.03 Aligned_cols=45 Identities=27% Similarity=0.344 Sum_probs=32.5
Q ss_pred eeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 119 VYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 119 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
+||....+.++++.+..... .. .-|.|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~~-~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---SD-LPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---ST-S-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhC---CC-CCEEEEcCCCCcHHHHHHHHHHh
Confidence 46888888888887765422 22 35669999999999999999983
No 238
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.72 E-value=0.015 Score=59.74 Aligned_cols=36 Identities=31% Similarity=0.456 Sum_probs=27.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEE
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWT 180 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 180 (1385)
...+|.++|+.|+||||+|+.++. +....+..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 346999999999999999999997 344455555555
No 239
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.70 E-value=0.0066 Score=37.16 Aligned_cols=22 Identities=32% Similarity=0.680 Sum_probs=19.0
Q ss_pred ceeEEEEcCcccccccccccCC
Q 035550 531 RLRVFSLRGYYISELPDSFGDL 552 (1385)
Q Consensus 531 ~Lr~L~L~~~~i~~lp~~i~~L 552 (1385)
+|++|||++|.|+.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999888764
No 240
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.67 E-value=0.0076 Score=70.53 Aligned_cols=49 Identities=22% Similarity=0.348 Sum_probs=39.6
Q ss_pred eeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 118 KVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 118 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
+++|.++.+++|++.|......-...-+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999998432211223457999999999999999999987
No 241
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.65 E-value=0.33 Score=55.26 Aligned_cols=208 Identities=12% Similarity=0.114 Sum_probs=121.2
Q ss_pred chhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHH-HHHhcCccccccCCcEEEEEeCCC---CCHHHHHHHHHH
Q 035550 122 RETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLA-QLVYNDKQVQDHFDLKAWTCVSDD---FDVIRLTKSILL 197 (1385)
Q Consensus 122 r~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~ 197 (1385)
|.+..++|..||.+.. -.+|.|.|+-|.||+.|+ .++.++.+. +..++|.+- .+-..+++.++.
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHH
Confidence 6788999999997654 369999999999999999 777764222 555555432 233444444444
Q ss_pred HhcCC-----------------------CCCCccCH-HHHHH-------HHHh-------------------HcC---CC
Q 035550 198 SIASD-----------------------QIVDNHDL-NKLQE-------ELKK-------------------KLS---PK 224 (1385)
Q Consensus 198 ~~~~~-----------------------~~~~~~~~-~~~~~-------~l~~-------------------~l~---~~ 224 (1385)
+++-- ...-..+. .++.. .|++ +|. .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 44321 11011111 11111 1221 011 12
Q ss_pred eEEEEEecCCCCCc---------cccccccCcccCCCCCcEEEEEccchhHhhhhC------CCCcccCCCCChhhhHHH
Q 035550 225 KFLLVLDDVWNENY---------NDWDRLRPPFEAGAPGSKIIVTARNQGVAAIMG------TAPAYQLKKLSNDDCLSV 289 (1385)
Q Consensus 225 ~~LlVlDdv~~~~~---------~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~------~~~~~~l~~L~~~~~~~l 289 (1385)
|=+||+|+.-.... .+|.... . ..+-.+||++|-+........ ..+.+.+...+.+.|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~L---v-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASL---V-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHH---H-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 56899999843211 1232211 1 124468999998765554432 235788999999999999
Q ss_pred hhhhccCcCCC------------CCc----hhHHHHHHHHHHhcCCCchHHHHHhhhhcCCCCHH-HHHHHHh
Q 035550 290 FAQHSLGTRDF------------SSN----KSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKDDRR-EWEDVLS 345 (1385)
Q Consensus 290 f~~~a~~~~~~------------~~~----~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~-~w~~~l~ 345 (1385)
...+....... ... ....+-....++..||=-.-+..+++.++...+++ .-.++.+
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 98876432110 000 11223345578889999999999999998765543 3344443
No 242
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.62 E-value=0.068 Score=68.45 Aligned_cols=178 Identities=15% Similarity=0.183 Sum_probs=92.1
Q ss_pred CeeeechhHHHHHHHHHhcCCc-------CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDL-------RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVI 189 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 189 (1385)
.++.|.+..+++|.+.+.-.-. -+....+-|.++|++|.|||++|+++++. ....| +.+.. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~----~ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRG----P 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----H
Confidence 4577888888888776532100 01123345889999999999999999984 22222 22211 1
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCC------Cccc------cccccCcccC--CCCCc
Q 035550 190 RLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNE------NYND------WDRLRPPFEA--GAPGS 255 (1385)
Q Consensus 190 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------~~~~------~~~l~~~l~~--~~~gs 255 (1385)
+++....+ .....+...+...-+..+.+|++|++..- .... ...+...+.. ...+.
T Consensus 522 ----~l~~~~vG------ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 ----EILSKWVG------ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred ----HHhhcccC------cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 11111111 11122333333333467799999998321 0000 0112222221 12344
Q ss_pred EEEEEccchhHhhhh-----CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCC
Q 035550 256 KIIVTARNQGVAAIM-----GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGL 320 (1385)
Q Consensus 256 ~ilvTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 320 (1385)
.||.||...+..... .-+..+.++..+.++-.++|..+..+.. .....++. .+++.+.|.
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~-~~~~~~l~----~la~~t~g~ 656 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP-LAEDVDLE----ELAEMTEGY 656 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC-CCccCCHH----HHHHHcCCC
Confidence 566677665443321 1235688888888888888876543221 11222233 366667664
No 243
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.57 E-value=0.2 Score=57.59 Aligned_cols=42 Identities=21% Similarity=0.365 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 123 ETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 123 ~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
+.-.+.+.+.+...+ .....+|+|.|.-|+||||+.+++.+.
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445567777776542 145789999999999999999998874
No 244
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.55 E-value=0.034 Score=59.57 Aligned_cols=44 Identities=18% Similarity=0.098 Sum_probs=32.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCC
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFD 187 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 187 (1385)
+..+++.|.|.+|+||||+|.+++.. ....-..++|++....++
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 45689999999999999999998863 222334577887655543
No 245
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.54 E-value=0.025 Score=61.55 Aligned_cols=90 Identities=28% Similarity=0.286 Sum_probs=53.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccc----ccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCC--------CCccCH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQ----DHFDLKAWTCVSDDFDVIRLTKSILLSIASDQI--------VDNHDL 210 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~ 210 (1385)
...+.=|+|.+|+|||.||.+++-..... +.=..++|++-...|+..++. +|++....... ....+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 44689999999999999998876422222 122468999988889887765 45555432210 011233
Q ss_pred HHHHHH---HHhHc-CCCeEEEEEecC
Q 035550 211 NKLQEE---LKKKL-SPKKFLLVLDDV 233 (1385)
Q Consensus 211 ~~~~~~---l~~~l-~~~~~LlVlDdv 233 (1385)
+++.+. +...+ ..+--|||+|.+
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHhhccccceEEEEecch
Confidence 333333 33333 234448888888
No 246
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.54 E-value=0.023 Score=61.54 Aligned_cols=81 Identities=22% Similarity=0.255 Sum_probs=48.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSP 223 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 223 (1385)
..-+.++|.+|+|||.||.++.+.. ...--.+.++++ .++..++........ ....+.+.++.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l--~~~g~sv~f~~~------~el~~~Lk~~~~~~~---------~~~~l~~~l~~ 167 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNEL--LKAGISVLFITA------PDLLSKLKAAFDEGR---------LEEKLLRELKK 167 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEEH------HHHHHHHHHHHhcCc---------hHHHHHHHhhc
Confidence 3468899999999999999999953 333234555543 445555555443211 12223332221
Q ss_pred CeEEEEEecCCCCCccccc
Q 035550 224 KKFLLVLDDVWNENYNDWD 242 (1385)
Q Consensus 224 ~~~LlVlDdv~~~~~~~~~ 242 (1385)
-=||||||+-......|.
T Consensus 168 -~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 168 -VDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred -CCEEEEecccCccCCHHH
Confidence 238999999655445554
No 247
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.53 E-value=0.033 Score=60.07 Aligned_cols=88 Identities=17% Similarity=0.174 Sum_probs=51.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccC-CcEEEEEeCCCC-CHHHHHHHHHHHhcCCCC-----CCccC-HH----
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF-DLKAWTCVSDDF-DVIRLTKSILLSIASDQI-----VDNHD-LN---- 211 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~-----~~~~~-~~---- 211 (1385)
-+-++|+|..|+||||||+++++. .+.+| +.++++-+.+.. .+.++.+++.+.-..+.. ..... ..
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 467899999999999999999984 44344 345566666654 345555555432111100 01111 11
Q ss_pred -HHHHHHHhHc---CCCeEEEEEecC
Q 035550 212 -KLQEELKKKL---SPKKFLLVLDDV 233 (1385)
Q Consensus 212 -~~~~~l~~~l---~~~~~LlVlDdv 233 (1385)
...-.+-+++ +++.+|+|+||+
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1112333444 389999999999
No 248
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.51 E-value=0.019 Score=63.80 Aligned_cols=85 Identities=21% Similarity=0.134 Sum_probs=54.6
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCC----CCccCHHHHHHHH
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQI----VDNHDLNKLQEEL 217 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~l 217 (1385)
+.-+++-|+|++|+||||||.+++.. ....-..++|++..+.++.. .+.+++.... ....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 45689999999999999999998763 33344678899877766653 2333332110 1223445555555
Q ss_pred HhHcC-CCeEEEEEecC
Q 035550 218 KKKLS-PKKFLLVLDDV 233 (1385)
Q Consensus 218 ~~~l~-~~~~LlVlDdv 233 (1385)
...++ +.--+||+|-|
T Consensus 126 ~~li~s~~~~lIVIDSv 142 (325)
T cd00983 126 DSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHhccCCCEEEEcch
Confidence 55543 44568999998
No 249
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.44 E-value=0.033 Score=54.77 Aligned_cols=118 Identities=15% Similarity=0.137 Sum_probs=61.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEe---CCCCCHHHHHHHHHHHh-----cCCCCCCccCH------
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCV---SDDFDVIRLTKSILLSI-----ASDQIVDNHDL------ 210 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~~~~~~~~~~i~~~~-----~~~~~~~~~~~------ 210 (1385)
..|-|++-.|.||||+|...+-. ...+=..+.++.. ........+++.+- .+ +....-...+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r--a~~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR--ALGHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHH
Confidence 36778888899999999877652 2222223444332 22334444444430 01 00000000111
Q ss_pred -HHHHHHHHhHcCCCeE-EEEEecCCCC---CccccccccCcccCCCCCcEEEEEccchh
Q 035550 211 -NKLQEELKKKLSPKKF-LLVLDDVWNE---NYNDWDRLRPPFEAGAPGSKIIVTARNQG 265 (1385)
Q Consensus 211 -~~~~~~l~~~l~~~~~-LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 265 (1385)
....+..++.+....| |+|||++-.. ..-..+.+...+.....+..||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1122334444544444 9999998322 12234455555555566778999999853
No 250
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.41 E-value=0.0077 Score=62.55 Aligned_cols=58 Identities=29% Similarity=0.352 Sum_probs=27.2
Q ss_pred CCccccEEecccc--ccc-ccchhhhccCCccEEecCCCcchhhhhhc---ccccCCCCeeecCCC
Q 035550 551 DLRYLRYLNLSLT--EIR-TLPESVNKLYNLHTLLLEGCRRLKKLCAD---MGNLIKLHHLDNLDT 610 (1385)
Q Consensus 551 ~L~~L~~L~L~~~--~i~-~lP~~i~~L~~L~~L~L~~~~~l~~lp~~---i~~L~~L~~L~l~~~ 610 (1385)
.|.+|++|+++.| ++. .++-...++++|++|++++| .++. +++ ..++.+|..|++.+|
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~-lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKD-LSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-cccc-ccccchhhhhcchhhhhcccC
Confidence 4455555555555 333 33333344455555555554 2221 122 344445555555555
No 251
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.40 E-value=0.021 Score=63.46 Aligned_cols=85 Identities=20% Similarity=0.137 Sum_probs=54.2
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCC----CCccCHHHHHHHH
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQI----VDNHDLNKLQEEL 217 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~l 217 (1385)
+.-+++-|+|++|+||||||.+++.. ....-..++|++.-+.++.. .+++++.... ......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45689999999999999999988763 33334567888776665543 2333332210 1223445555555
Q ss_pred HhHcC-CCeEEEEEecC
Q 035550 218 KKKLS-PKKFLLVLDDV 233 (1385)
Q Consensus 218 ~~~l~-~~~~LlVlDdv 233 (1385)
...++ +..-+||+|-|
T Consensus 126 ~~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSV 142 (321)
T ss_pred HHHhhccCCcEEEEcch
Confidence 55543 45669999998
No 252
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.39 E-value=0.032 Score=70.03 Aligned_cols=120 Identities=13% Similarity=0.135 Sum_probs=67.0
Q ss_pred CeeeechhHHHHHHHHHhcCCc---CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDL---RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTK 193 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 193 (1385)
..++|-++.++.|...+..... ..+.....+.++|+.|+|||++|+.++.. .. ...+.+++++-.+..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~---~~~i~id~se~~~~~---- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERH---- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hC---CCcEEeechhhcccc----
Confidence 4689999999999998864211 01223457889999999999999999873 22 223344444322111
Q ss_pred HHHHHhcCCCCC--CccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccccccccCccc
Q 035550 194 SILLSIASDQIV--DNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPFE 249 (1385)
Q Consensus 194 ~i~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~ 249 (1385)
. ...+.+.... .......+.+.+++ ....+|+||++.....+.+..+...+.
T Consensus 529 ~-~~~LiG~~~gyvg~~~~g~L~~~v~~---~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 529 T-VSRLIGAPPGYVGFDQGGLLTDAVIK---HPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred c-HHHHcCCCCCcccccccchHHHHHHh---CCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 1 1222222110 11111122233321 234699999996666566666655443
No 253
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.39 E-value=0.05 Score=62.75 Aligned_cols=142 Identities=11% Similarity=0.113 Sum_probs=77.2
Q ss_pred eeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccc-------------------cCCcEE
Q 035550 118 KVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQD-------------------HFDLKA 178 (1385)
Q Consensus 118 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 178 (1385)
.++|-+....++..+...... ....+.++|++|+||||+|..+++..--.. ....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~----~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR----LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC----CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 357788888888888864421 233588999999999999999987321000 012233
Q ss_pred EEEeCCCCC---HHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccccccccCcccCCCCCc
Q 035550 179 WTCVSDDFD---VIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGS 255 (1385)
Q Consensus 179 wv~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 255 (1385)
.+..+.... ..+..+++.+....... .++.-++++|++..-+.+.-..+...+......+
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~ 140 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNT 140 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCe
Confidence 333333222 12222222222211110 2567789999995444434444554454445667
Q ss_pred EEEEEccch-hHhhhhCC-CCcccCCC
Q 035550 256 KIIVTARNQ-GVAAIMGT-APAYQLKK 280 (1385)
Q Consensus 256 ~ilvTtR~~-~v~~~~~~-~~~~~l~~ 280 (1385)
++|++|... .+...+.. ...+++.+
T Consensus 141 ~~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 141 RFILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEEEcCChhhccchhhhcceeeecCC
Confidence 888777743 33332222 23556665
No 254
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.38 E-value=0.031 Score=57.44 Aligned_cols=77 Identities=25% Similarity=0.186 Sum_probs=44.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHH--Hhc-CCCCCCccCHHHHHHHHH
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILL--SIA-SDQIVDNHDLNKLQEELK 218 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~--~~~-~~~~~~~~~~~~~~~~l~ 218 (1385)
.++.+|+|.|.+|.||||+|++++. .+... ++.+-...+.-...+..-. ... .-..+...+.+-+.+.|.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~-----~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~ 78 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVE-----KVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLK 78 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcC-----cceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHH
Confidence 3568999999999999999999987 33322 2221111011001111111 111 112235667778888888
Q ss_pred hHcCCCe
Q 035550 219 KKLSPKK 225 (1385)
Q Consensus 219 ~~l~~~~ 225 (1385)
..+++++
T Consensus 79 ~L~~g~~ 85 (218)
T COG0572 79 DLKQGKP 85 (218)
T ss_pred HHHcCCc
Confidence 8888887
No 255
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.05 Score=61.84 Aligned_cols=54 Identities=31% Similarity=0.330 Sum_probs=38.2
Q ss_pred Ceeeech---hHHHHHHHHHhcCCc---CCCCCcEEEEEEcCCCChHHHHHHHHhcCccc
Q 035550 117 AKVYGRE---TEKKEIVELLLRDDL---RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQV 170 (1385)
Q Consensus 117 ~~~vGr~---~~~~~l~~~L~~~~~---~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~ 170 (1385)
.++-|.| +|+++|++.|.++.. -++.-.+-|.++|++|.|||-||++|+-...+
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 3455665 577778888865432 12333566889999999999999999985433
No 256
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.35 E-value=0.0094 Score=58.28 Aligned_cols=44 Identities=25% Similarity=0.255 Sum_probs=30.7
Q ss_pred eechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 120 YGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 120 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
||+...++++.+.+..-.. ....|.|+|..|+||+++|+.++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 5777777777777654321 2246789999999999999988874
No 257
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.33 E-value=0.087 Score=59.28 Aligned_cols=88 Identities=16% Similarity=0.189 Sum_probs=46.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF-DVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKL 221 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 221 (1385)
+.++|+++|++|+||||++..++.. ....-..+..+...... ...+-++...+.++.... ...+...+.+.+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~-v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI-AVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEE-ecCCHHHHHHHHHHHH
Confidence 4579999999999999999998863 22221234445443211 122223333333332221 2335555655554432
Q ss_pred CC-CeEEEEEecC
Q 035550 222 SP-KKFLLVLDDV 233 (1385)
Q Consensus 222 ~~-~~~LlVlDdv 233 (1385)
.. +.=++++|-.
T Consensus 317 ~~~~~DvVLIDTa 329 (436)
T PRK11889 317 EEARVDYILIDTA 329 (436)
T ss_pred hccCCCEEEEeCc
Confidence 21 2236777876
No 258
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.32 E-value=0.04 Score=66.98 Aligned_cols=43 Identities=30% Similarity=0.390 Sum_probs=35.0
Q ss_pred eeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 118 KVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 118 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
+++|.+..++.+...+... ...-|.|+|.+|+|||++|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 5899999999998876432 224567999999999999999975
No 259
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.31 E-value=0.058 Score=64.10 Aligned_cols=159 Identities=13% Similarity=0.085 Sum_probs=80.0
Q ss_pred CeeeechhHHHHHHHHHhcC----CcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRD----DLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLT 192 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~----~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 192 (1385)
.++.|.+..++.+.+....- ..-+-...+-|.++|++|.|||.+|+.+++. ....| +-+.++.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~-------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGK-------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHH--------
Confidence 35678777666665432110 0001133466889999999999999999983 22222 1122111
Q ss_pred HHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCc--ccc----------ccccCcccCCCCCcEEEEE
Q 035550 193 KSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENY--NDW----------DRLRPPFEAGAPGSKIIVT 260 (1385)
Q Consensus 193 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~----------~~l~~~l~~~~~gs~ilvT 260 (1385)
+..... ..+...+.+.+...-...+++|++|++..--. ... ..+...+.....+.-||.|
T Consensus 295 --l~~~~v------Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 295 --LFGGIV------GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred --hccccc------ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 111110 01112233333322235789999999832100 000 0011112222233446667
Q ss_pred ccchhHhh-hh----CCCCcccCCCCChhhhHHHhhhhccC
Q 035550 261 ARNQGVAA-IM----GTAPAYQLKKLSNDDCLSVFAQHSLG 296 (1385)
Q Consensus 261 tR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~a~~ 296 (1385)
|.+.+... .+ .-+..+.++.-+.++-.++|..+..+
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 76553222 11 12356778888888888888877543
No 260
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.30 E-value=0.041 Score=65.22 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=53.4
Q ss_pred CCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhH
Q 035550 141 DGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKK 220 (1385)
Q Consensus 141 ~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (1385)
.+.-++..++|++|+||||||.-++++. .| .++=+++|+..+...+-..|...+......+
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~-------------- 383 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHSVLD-------------- 383 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhccccc--------------
Confidence 3567899999999999999999998742 22 3666788887777666666655544332200
Q ss_pred cCCCeEEEEEecCCCC
Q 035550 221 LSPKKFLLVLDDVWNE 236 (1385)
Q Consensus 221 l~~~~~LlVlDdv~~~ 236 (1385)
-.+++..||+|.+...
T Consensus 384 adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 384 ADSRPVCLVIDEIDGA 399 (877)
T ss_pred cCCCcceEEEecccCC
Confidence 0257888999998443
No 261
>PRK09354 recA recombinase A; Provisional
Probab=95.30 E-value=0.026 Score=63.12 Aligned_cols=85 Identities=20% Similarity=0.136 Sum_probs=55.6
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCC----CCccCHHHHHHHH
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQI----VDNHDLNKLQEEL 217 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~l 217 (1385)
+.-+++-|+|++|+||||||.+++.. ....-..++|++.-..++.. .+++++.... ......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45689999999999999999998763 33445678899887776653 2333332210 0123355555555
Q ss_pred HhHcC-CCeEEEEEecC
Q 035550 218 KKKLS-PKKFLLVLDDV 233 (1385)
Q Consensus 218 ~~~l~-~~~~LlVlDdv 233 (1385)
...++ +..-+||+|-|
T Consensus 131 ~~li~s~~~~lIVIDSv 147 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSV 147 (349)
T ss_pred HHHhhcCCCCEEEEeCh
Confidence 55553 45568999998
No 262
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.25 E-value=0.055 Score=60.00 Aligned_cols=88 Identities=18% Similarity=0.164 Sum_probs=46.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF-DVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKL 221 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 221 (1385)
..++++|+|++|+||||++..++.....+..-..+..++..... .....+....+.++.... ...+...+.+.+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~-~~~~~~~l~~~l~~~- 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK-VARDPKELRKALDRL- 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee-ccCCHHHHHHHHHHc-
Confidence 45799999999999999999887632222111235555543311 122222333333332221 233445555555443
Q ss_pred CCCeEEEEEecC
Q 035550 222 SPKKFLLVLDDV 233 (1385)
Q Consensus 222 ~~~~~LlVlDdv 233 (1385)
.+ .=+|++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 33 347777754
No 263
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.21 E-value=0.043 Score=56.88 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=36.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCC-CCCHHHHHHHHHHHhcCC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD-DFDVIRLTKSILLSIASD 202 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~~~~~ 202 (1385)
+||.++|+.|+||||.+.+++.. ....-..+..++... .....+-++..++.++..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred EEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 68999999999999988777763 222334466666543 234556666777777654
No 264
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.20 E-value=0.0043 Score=64.34 Aligned_cols=89 Identities=18% Similarity=0.133 Sum_probs=51.1
Q ss_pred hhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccc--cCcccccccCCCCCccceeeccccCCC--CCCccc
Q 035550 1154 IAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNC--KRLEALPKGLHNLTSLQELTIGIGGAL--PSLEEE 1229 (1385)
Q Consensus 1154 ~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n--~~~~~lp~~l~~l~~L~~L~L~~n~~~--~~~~~~ 1229 (1385)
+......+..|+.|.+.++..++. ..+..+++|++|.++.| ...+.++.....+|+|++|++++|.+- .+++ .
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-P 111 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-h
Confidence 334444556666666666663332 12445667777777777 445555555556677777777777643 2222 3
Q ss_pred CCCCCCcceeEecCCc
Q 035550 1230 DGLPTNLQSLNIWGNM 1245 (1385)
Q Consensus 1230 ~~~~~~L~~L~L~~n~ 1245 (1385)
...+.+|..|++.+|.
T Consensus 112 l~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCS 127 (260)
T ss_pred hhhhcchhhhhcccCC
Confidence 3455666666666664
No 265
>PRK08233 hypothetical protein; Provisional
Probab=95.18 E-value=0.052 Score=56.25 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
..+|+|.|.+|+||||+|+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 379999999999999999999873
No 266
>PRK04132 replication factor C small subunit; Provisional
Probab=95.17 E-value=0.15 Score=64.32 Aligned_cols=155 Identities=14% Similarity=0.072 Sum_probs=92.2
Q ss_pred Ec--CCCChHHHHHHHHhcCccccccC-CcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeE
Q 035550 150 IG--MGGLGKTTLAQLVYNDKQVQDHF-DLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKF 226 (1385)
Q Consensus 150 ~G--~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 226 (1385)
.| +.++||||+|..++++. ....+ ..++-+++++..+.. ..++++..+...... -..+.-
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~---------------~~~~~K 632 (846)
T PRK04132 570 GGNLPTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI---------------GGASFK 632 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc---------------CCCCCE
Confidence 36 67899999999999842 11122 234556666644443 334444433221110 012457
Q ss_pred EEEEecCCCCCccccccccCcccCCCCCcEEEEEccch-hHhhhhC-CCCcccCCCCChhhhHHHhhhhccCcCCCCCch
Q 035550 227 LLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQ-GVAAIMG-TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNK 304 (1385)
Q Consensus 227 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~ 304 (1385)
++|+|++..-+......+...+......+++|++|.+. .+...+. ....+.+.+++.++....+...+.......+
T Consensus 633 VvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~-- 710 (846)
T PRK04132 633 IIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT-- 710 (846)
T ss_pred EEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC--
Confidence 99999996666556666766665544566766665543 3333332 2357999999999988877765432211111
Q ss_pred hHHHHHHHHHHhcCCCchHHH
Q 035550 305 SLEEIGKKIVIKCNGLPLAAK 325 (1385)
Q Consensus 305 ~~~~~~~~i~~~~~g~PLai~ 325 (1385)
.+....|++.++|-+-.+.
T Consensus 711 --~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 711 --EEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred --HHHHHHHHHHcCCCHHHHH
Confidence 3456679999999874443
No 267
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.11 E-value=0.051 Score=60.80 Aligned_cols=59 Identities=19% Similarity=0.170 Sum_probs=42.0
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCcccc----ccCCcEEEEEeCCCCCHHHHHHHHHHHhcC
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQ----DHFDLKAWTCVSDDFDVIRLTKSILLSIAS 201 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 201 (1385)
+..+++-|+|.+|+|||+++.+++-..... ..=..++|++....|+..++.+ ++++++.
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 456899999999999999998876321111 1124689999988888887654 4555543
No 268
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.08 E-value=0.016 Score=55.30 Aligned_cols=23 Identities=39% Similarity=0.432 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
--|+|.||+|+||||+++.+.+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHH
Confidence 46889999999999999999974
No 269
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.08 E-value=0.085 Score=57.21 Aligned_cols=91 Identities=23% Similarity=0.179 Sum_probs=58.0
Q ss_pred CCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHH-hc---CCCCCCccCHHHHHH
Q 035550 140 NDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLS-IA---SDQIVDNHDLNKLQE 215 (1385)
Q Consensus 140 ~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-~~---~~~~~~~~~~~~~~~ 215 (1385)
+-+..+++=|+|+.|.||||+|.+++-. .+..-..++|++.-..+++.++.. +... +. ...+.....-.++.+
T Consensus 56 Gl~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~ 132 (279)
T COG0468 56 GLPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAE 132 (279)
T ss_pred CcccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHH
Confidence 3356789999999999999999998763 444445899999999898876543 3333 22 111111122223334
Q ss_pred HHHhHcCCCeEEEEEecC
Q 035550 216 ELKKKLSPKKFLLVLDDV 233 (1385)
Q Consensus 216 ~l~~~l~~~~~LlVlDdv 233 (1385)
.+......+--|+|+|-|
T Consensus 133 ~~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 133 KLARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHHhccCCCCEEEEecC
Confidence 444444444568999988
No 270
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.2 Score=58.33 Aligned_cols=98 Identities=19% Similarity=0.261 Sum_probs=64.6
Q ss_pred CCeeeechhHHHHHHHHHhcCCcC------CCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHH
Q 035550 116 EAKVYGRETEKKEIVELLLRDDLR------NDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVI 189 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 189 (1385)
-.++=|.++.++++.+++..-... +-...+-|.++|++|.|||.||++++++..+ .| +.++.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v--Pf-----~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV--PF-----LSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC--ce-----Eeecch----
Confidence 346778999999998887542210 1223456889999999999999999985322 23 333221
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCC
Q 035550 190 RLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVW 234 (1385)
Q Consensus 190 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~ 234 (1385)
+|+..+. ..+.+.+.+.+.+.-+.-++++++|++.
T Consensus 258 ----eivSGvS------GESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 258 ----EIVSGVS------GESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred ----hhhcccC------cccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 2233332 2334556666677777899999999983
No 271
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.05 E-value=0.076 Score=68.01 Aligned_cols=51 Identities=25% Similarity=0.214 Sum_probs=37.3
Q ss_pred CeeeechhHHHHHHHHHhcCCc-------CCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 117 AKVYGRETEKKEIVELLLRDDL-------RNDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
.++.|.++.++++.+++...-. -+-...+-|.++|++|+|||++|+.+++.
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 3578999999999887642100 01123356889999999999999999873
No 272
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.00 E-value=0.11 Score=58.63 Aligned_cols=71 Identities=11% Similarity=0.148 Sum_probs=42.4
Q ss_pred CCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchh-HhhhhC-CCCcccCCCCChhhhHHHhhhh
Q 035550 223 PKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQG-VAAIMG-TAPAYQLKKLSNDDCLSVFAQH 293 (1385)
Q Consensus 223 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~~-~~~~~~l~~L~~~~~~~lf~~~ 293 (1385)
+++-++|+|++..-+...-..+...+.....+..+|++|.+.+ +...+. .-..+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3344556688854444444444444443334566777776653 443332 2357889999999999888654
No 273
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.95 E-value=0.061 Score=61.10 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=40.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCcccccc----CCcEEEEEeCCCCCHHHHHHHHHHHh
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDH----FDLKAWTCVSDDFDVIRLTKSILLSI 199 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~~ 199 (1385)
+...++-|+|.+|+|||++|.+++-....... =..++|++....++..++.+. ++.+
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~-~~~~ 160 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM-AEAL 160 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH-HHHc
Confidence 45679999999999999999998753221111 147899999888887766543 3444
No 274
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.95 E-value=0.059 Score=60.75 Aligned_cols=59 Identities=19% Similarity=0.107 Sum_probs=42.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccc----cccCCcEEEEEeCCCCCHHHHHHHHHHHhcC
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQV----QDHFDLKAWTCVSDDFDVIRLTKSILLSIAS 201 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 201 (1385)
+..+++-|+|.+|+|||+|+.+++-.... ...-..++|++....|++.++.+ ++++++.
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 45688999999999999999988632111 11225789999999898887655 4555543
No 275
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.94 E-value=0.085 Score=53.51 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=28.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCC
Q 035550 146 VIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF 186 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 186 (1385)
++.|+|.+|+||||+|..+... ....-..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcch
Confidence 3679999999999999999873 22233557777766554
No 276
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.94 E-value=0.12 Score=55.58 Aligned_cols=173 Identities=25% Similarity=0.287 Sum_probs=86.1
Q ss_pred eeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCC-----CHHHHH
Q 035550 118 KVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF-----DVIRLT 192 (1385)
Q Consensus 118 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-----~~~~~~ 192 (1385)
.++|-.++...+-.++.+.-. -++..-|.|+|+.|.|||+|...+..+ .+..-+...-|...... .+..+.
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 478999998888888864321 112345678999999999998877765 22111233334444332 233344
Q ss_pred HHHHHHhcCCCC---CCccCHHHHHHHHHhHc--CCCeEEEEEecCCCCCccccc-cccCcc----cCCCCCcEEEEEcc
Q 035550 193 KSILLSIASDQI---VDNHDLNKLQEELKKKL--SPKKFLLVLDDVWNENYNDWD-RLRPPF----EAGAPGSKIIVTAR 262 (1385)
Q Consensus 193 ~~i~~~~~~~~~---~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~~~~~~-~l~~~l----~~~~~gs~ilvTtR 262 (1385)
+++..++..... .-......+...+...- .+-++.+|+|...-.-...-. .+...| ....+-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 444433332211 11223344444444322 234578888877211100000 011111 12345567789999
Q ss_pred chh-------HhhhhCCCCcccCCCCChhhhHHHhhhhc
Q 035550 263 NQG-------VAAIMGTAPAYQLKKLSNDDCLSVFAQHS 294 (1385)
Q Consensus 263 ~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 294 (1385)
-.- |-....-..++-++.++-++-..++++..
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 532 22222112244455566666666665543
No 277
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.91 E-value=0.023 Score=59.38 Aligned_cols=112 Identities=15% Similarity=0.189 Sum_probs=57.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPK 224 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 224 (1385)
.+|.|+|+.|.||||++..+... ........++.-. ++... ..... ..+..... ...+.....+.++..++..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~e-~~~E~--~~~~~-~~~i~q~~-vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTIE-DPIEF--VHESK-RSLINQRE-VGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEEc-CCccc--cccCc-cceeeecc-cCCCccCHHHHHHHHhcCC
Confidence 37899999999999999987763 2223333444322 21110 00000 00000000 0111233455677777766
Q ss_pred eEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchhHhh
Q 035550 225 KFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQGVAA 268 (1385)
Q Consensus 225 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 268 (1385)
+=.+++|++.+. +.+..... ....|..|+.|+-...+..
T Consensus 75 pd~ii~gEird~--e~~~~~l~---~a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 75 PDVILVGEMRDL--ETIRLALT---AAETGHLVMSTLHTNSAAK 113 (198)
T ss_pred cCEEEEcCCCCH--HHHHHHHH---HHHcCCEEEEEecCCcHHH
Confidence 779999999432 33333222 2234556777776655543
No 278
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.89 E-value=0.07 Score=60.63 Aligned_cols=88 Identities=17% Similarity=0.121 Sum_probs=48.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD-DFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKL 221 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 221 (1385)
...++.++|+.|+||||++.++......+.....+..++... .....+-++...+.++.... ...+..++...+. .+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~-~~~~~~~l~~~l~-~l 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH-AVKDGGDLQLALA-EL 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE-ecCCcccHHHHHH-Hh
Confidence 356999999999999999999987321111123455554322 22344445555555554322 2223333434343 34
Q ss_pred CCCeEEEEEecC
Q 035550 222 SPKKFLLVLDDV 233 (1385)
Q Consensus 222 ~~~~~LlVlDdv 233 (1385)
.++ -++++|..
T Consensus 214 ~~~-DlVLIDTa 224 (374)
T PRK14722 214 RNK-HMVLIDTI 224 (374)
T ss_pred cCC-CEEEEcCC
Confidence 444 45668987
No 279
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.84 E-value=0.077 Score=59.62 Aligned_cols=86 Identities=19% Similarity=0.142 Sum_probs=47.1
Q ss_pred cEEEEEEcCCCChHHH-HHHHHhcCccccccCCcEEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHc
Q 035550 144 FSVIPIIGMGGLGKTT-LAQLVYNDKQVQDHFDLKAWTCVSD-DFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKL 221 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTt-La~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 221 (1385)
-++|.+||+.|+|||| ||+..++-.. ...=..+..++... .....+-++..++-++..-. ...+..++...+...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~-~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~-vv~~~~el~~ai~~l- 279 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVM-LKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE-VVYSPKELAEAIEAL- 279 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHh-hccCcceEEEEeccchhhHHHHHHHHHHHhCCceE-EecCHHHHHHHHHHh-
Confidence 6899999999999998 6666554211 12223455555433 22344444555555554433 345566665555443
Q ss_pred CCCeEEEEEecC
Q 035550 222 SPKKFLLVLDDV 233 (1385)
Q Consensus 222 ~~~~~LlVlDdv 233 (1385)
++. =+|.+|=+
T Consensus 280 ~~~-d~ILVDTa 290 (407)
T COG1419 280 RDC-DVILVDTA 290 (407)
T ss_pred hcC-CEEEEeCC
Confidence 333 34445655
No 280
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.79 E-value=0.037 Score=56.14 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 035550 146 VIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999874
No 281
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.092 Score=65.50 Aligned_cols=121 Identities=13% Similarity=0.183 Sum_probs=71.2
Q ss_pred CeeeechhHHHHHHHHHhcCCcC-CC-CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLR-ND-GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKS 194 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~-~~-~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 194 (1385)
..++|-++.+..|.+.+...... .+ .......+.|+.|+|||-||++++. .+-+..+..+-++.++ ..+
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE------FQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh------hhh-
Confidence 35788888888888888655421 11 2455677899999999999999986 3333334445554443 222
Q ss_pred HHHHhcCCCCCCccCHHHHHHHHHhHcCCCeE-EEEEecCCCCCccccccccCccc
Q 035550 195 ILLSIASDQIVDNHDLNKLQEELKKKLSPKKF-LLVLDDVWNENYNDWDRLRPPFE 249 (1385)
Q Consensus 195 i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~~~~~~~~l~~~l~ 249 (1385)
...+.+..+ ... ..+-...+.+.++.++| +|+||||...+++....+...+.
T Consensus 633 -vskligsp~-gyv-G~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 633 -VSKLIGSPP-GYV-GKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred -hhhccCCCc-ccc-cchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 223322221 111 11223356666777776 77789996666555554444443
No 282
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.78 E-value=0.15 Score=50.48 Aligned_cols=59 Identities=12% Similarity=0.240 Sum_probs=35.9
Q ss_pred HHHHHHHhHcCCCeEEEEEecCCC--CCccccccccCcccCCCCCcEEEEEccchhHhhhh
Q 035550 212 KLQEELKKKLSPKKFLLVLDDVWN--ENYNDWDRLRPPFEAGAPGSKIIVTARNQGVAAIM 270 (1385)
Q Consensus 212 ~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~ 270 (1385)
+-.-.|.+.+-+++-+|+-|.--. +..-.|+-+.-.-.-+..|..||++|-+.++...+
T Consensus 143 QQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 143 QQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhc
Confidence 333445556667888898886411 11133443322222245789999999999887765
No 283
>PRK13695 putative NTPase; Provisional
Probab=94.76 E-value=0.011 Score=60.51 Aligned_cols=22 Identities=41% Similarity=0.427 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 035550 146 VIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
-|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998864
No 284
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.73 E-value=0.092 Score=54.87 Aligned_cols=81 Identities=23% Similarity=0.227 Sum_probs=44.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccc-cCC---cEEEEEeCCCCCHHHHHHHHHHHhc---CCCCCCccCHHHHHHHHH
Q 035550 146 VIPIIGMGGLGKTTLAQLVYNDKQVQD-HFD---LKAWTCVSDDFDVIRLTKSILLSIA---SDQIVDNHDLNKLQEELK 218 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~~~~~~-~f~---~~~wv~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~l~ 218 (1385)
||+|.|.+|+||||+|+++... ... ... ....+....-......... -.... .-..+...+.+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~--L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI--LNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH--HTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH--hCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 7999999999999999999872 221 122 1333332222222222211 11111 111225567788888887
Q ss_pred hHcCCCeEEEE
Q 035550 219 KKLSPKKFLLV 229 (1385)
Q Consensus 219 ~~l~~~~~LlV 229 (1385)
...+++..-+-
T Consensus 78 ~L~~g~~i~~p 88 (194)
T PF00485_consen 78 ALKNGGSIEIP 88 (194)
T ss_dssp HHHTTSCEEEE
T ss_pred HHhCCCccccc
Confidence 76667665443
No 285
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.72 E-value=0.021 Score=59.55 Aligned_cols=106 Identities=18% Similarity=0.187 Sum_probs=50.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHc---
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKL--- 221 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l--- 221 (1385)
+++.|.|.+|.||||+++.+... ....-..++++ ...... ...+.+..+.. ...+..........-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~--~~~~g~~v~~~-apT~~A----a~~L~~~~~~~----a~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEA--LEAAGKRVIGL-APTNKA----AKELREKTGIE----AQTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHH--HHHTT--EEEE-ESSHHH----HHHHHHHHTS-----EEEHHHHTTEECCEECCS
T ss_pred eEEEEEECCCCCHHHHHHHHHHH--HHhCCCeEEEE-CCcHHH----HHHHHHhhCcc----hhhHHHHHhcCCcccccc
Confidence 58889999999999999988763 22221223333 322222 22232332211 111111111000000
Q ss_pred ---CCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccc
Q 035550 222 ---SPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARN 263 (1385)
Q Consensus 222 ---~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 263 (1385)
..++-+||+|++.--+...+..+...... .|+|+|+.--.
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 12345999999966555556665554443 47788775443
No 286
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.71 E-value=0.036 Score=54.23 Aligned_cols=36 Identities=28% Similarity=0.119 Sum_probs=26.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEE
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTC 181 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 181 (1385)
..||.|.|.+|+||||||+++.+ +....-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 36899999999999999999998 3433334455553
No 287
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.68 E-value=0.1 Score=53.77 Aligned_cols=24 Identities=42% Similarity=0.574 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
-.+++|+|..|.|||||++.++.-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999873
No 288
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.66 E-value=0.13 Score=59.87 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...++.++|.+|+||||.|..++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999888876
No 289
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.65 E-value=0.033 Score=64.60 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=35.9
Q ss_pred eeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 118 KVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 118 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.++||++.++.+...+..+. -|.|.|++|+|||++|+.+..
T Consensus 21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHH
Confidence 47899999999999886553 477999999999999999987
No 290
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.63 E-value=0.13 Score=60.42 Aligned_cols=88 Identities=17% Similarity=0.093 Sum_probs=44.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD-DFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKL 221 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 221 (1385)
...+|+|+|.+|+||||++.+++.....+.....+..++... .....+.++.....++.... ...+...+...+++.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~-~a~d~~~L~~aL~~l- 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH-EADSAESLLDLLERL- 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE-ecCcHHHHHHHHHHh-
Confidence 457999999999999999988875321111123344444322 11122222222222322111 223334455544433
Q ss_pred CCCeEEEEEecC
Q 035550 222 SPKKFLLVLDDV 233 (1385)
Q Consensus 222 ~~~~~LlVlDdv 233 (1385)
.+ .=+|++|..
T Consensus 427 ~~-~DLVLIDTa 437 (559)
T PRK12727 427 RD-YKLVLIDTA 437 (559)
T ss_pred cc-CCEEEecCC
Confidence 33 447888887
No 291
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.63 E-value=0.14 Score=59.85 Aligned_cols=88 Identities=18% Similarity=0.134 Sum_probs=45.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCC-CCHHHHHHHHHHHhcCCCCC--CccCHHHHHHHHHh
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD-FDVIRLTKSILLSIASDQIV--DNHDLNKLQEELKK 219 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~l~~ 219 (1385)
...+|.++|.+|+||||.|..++.. ....-..+.-|++... ....+.++.++.+++..... ...+...+.....+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 4679999999999999999998863 2222123344443221 12233445555555432211 11232232222222
Q ss_pred HcCCCeEEEEEecC
Q 035550 220 KLSPKKFLLVLDDV 233 (1385)
Q Consensus 220 ~l~~~~~LlVlDdv 233 (1385)
.+.+. =+||+|..
T Consensus 172 ~~~~~-DvVIIDTA 184 (437)
T PRK00771 172 KFKKA-DVIIVDTA 184 (437)
T ss_pred HhhcC-CEEEEECC
Confidence 33333 46777776
No 292
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.61 E-value=0.17 Score=52.21 Aligned_cols=121 Identities=15% Similarity=0.168 Sum_probs=62.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEE---eCCCCCHHHHHH------HHHHHhcCCCC----CCccC-
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTC---VSDDFDVIRLTK------SILLSIASDQI----VDNHD- 209 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---~~~~~~~~~~~~------~i~~~~~~~~~----~~~~~- 209 (1385)
-.+++|+|..|.|||||++.++... ......+++. +. ..+...... ++++.++.... ....+
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 3589999999999999999998732 2233444432 21 112222211 13444433211 01111
Q ss_pred HHHHHHHHHhHcCCCeEEEEEecCCCC-CccccccccCcccCC-CC-CcEEEEEccchhHhh
Q 035550 210 LNKLQEELKKKLSPKKFLLVLDDVWNE-NYNDWDRLRPPFEAG-AP-GSKIIVTARNQGVAA 268 (1385)
Q Consensus 210 ~~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~ilvTtR~~~v~~ 268 (1385)
-+...-.+-+.+...+-++++|+--.. +....+.+...+... .. |..||++|.+.+...
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 122222344555567788999987322 122233333333221 12 667888888776543
No 293
>PRK10867 signal recognition particle protein; Provisional
Probab=94.60 E-value=0.14 Score=59.77 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=20.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...+|.++|.+|+||||.|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998877765
No 294
>PRK07667 uridine kinase; Provisional
Probab=94.56 E-value=0.042 Score=57.27 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 126 KKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 126 ~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
++.|.+.+.... +...+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 456666665443 2448999999999999999999987
No 295
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.45 E-value=0.12 Score=55.02 Aligned_cols=74 Identities=16% Similarity=0.047 Sum_probs=39.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccc-cC-CcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcC
Q 035550 146 VIPIIGMGGLGKTTLAQLVYNDKQVQD-HF-DLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLS 222 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~~~~~~-~f-~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 222 (1385)
+|+|.|..|+||||+|+.+... ... .. ..+..++...-+.......... .+.....+...+.+.+.+.+...-.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~--l~~~~~~~~v~vi~~D~f~~~~~~~~~~~-~~~~~g~p~~~d~~~l~~~L~~l~~ 76 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL--LSRWPDHPNVELITTDGFLYPNKELIERG-LMDRKGFPESYDMEALLKFLKDIKS 76 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH--HhhcCCCCcEEEEecCcccCcHHHHHHhh-hhhcCCCcccCCHHHHHHHHHHHHC
Confidence 5899999999999999999863 221 01 2244454443332222222211 1111112255666666666665544
No 296
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=0.21 Score=61.05 Aligned_cols=157 Identities=16% Similarity=0.126 Sum_probs=82.9
Q ss_pred eeeechhHHHHHHHHHh---cCCcC----CCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHH
Q 035550 118 KVYGRETEKKEIVELLL---RDDLR----NDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIR 190 (1385)
Q Consensus 118 ~~vGr~~~~~~l~~~L~---~~~~~----~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 190 (1385)
++.|.+...+.+.+.+. ..... +-...+.+.++|++|.|||.||+++++ .....|-.+.+ .
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v~~-----~----- 310 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISVKG-----S----- 310 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEeeC-----H-----
Confidence 45556655555554442 21100 123455889999999999999999998 23334422221 1
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCC-----CCc------cccccccCcccC--CCCCcEE
Q 035550 191 LTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWN-----ENY------NDWDRLRPPFEA--GAPGSKI 257 (1385)
Q Consensus 191 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-----~~~------~~~~~l~~~l~~--~~~gs~i 257 (1385)
.+..... ......+.+.+...-+..++.|.+|++.. ... ....++...+.. ...+..|
T Consensus 311 ---~l~sk~v------Gesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~v 381 (494)
T COG0464 311 ---ELLSKWV------GESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLV 381 (494)
T ss_pred ---HHhcccc------chHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEE
Confidence 1111111 11122333444444467889999999821 000 011112222221 1233344
Q ss_pred EEEccchhHhhhh-----CCCCcccCCCCChhhhHHHhhhhcc
Q 035550 258 IVTARNQGVAAIM-----GTAPAYQLKKLSNDDCLSVFAQHSL 295 (1385)
Q Consensus 258 lvTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~ 295 (1385)
|-||-........ .-+..+.+.+-+.++..+.|+.+..
T Consensus 382 i~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 382 IAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred EecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 5555544433321 1135788889999999999998864
No 297
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.42 E-value=0.086 Score=59.25 Aligned_cols=58 Identities=21% Similarity=0.100 Sum_probs=39.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCcccc---c-cCCcEEEEEeCCCCCHHHHHHHHHHHhc
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQ---D-HFDLKAWTCVSDDFDVIRLTKSILLSIA 200 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 200 (1385)
+...++.|+|.+|+||||+|..++...... . .-..++|++....++..++ .++++.++
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 456899999999999999999886421111 1 1235799988887777763 33444443
No 298
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.41 E-value=0.15 Score=59.73 Aligned_cols=143 Identities=22% Similarity=0.297 Sum_probs=79.3
Q ss_pred hHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHH-HHHHHhcCccccccCCcEEEEEeCCCC--CHHHHHHHHHHHhc
Q 035550 124 TEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTT-LAQLVYNDKQVQDHFDLKAWTCVSDDF--DVIRLTKSILLSIA 200 (1385)
Q Consensus 124 ~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTt-La~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~~~ 200 (1385)
.-.++|++.+.+ .+||.|+|..|.|||| ||+.+|.+ .|..--.+.+.++. ....+.+.+.++++
T Consensus 359 ~~R~~ll~~ir~--------n~vvvivgETGSGKTTQl~QyL~ed-----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~ 425 (1042)
T KOG0924|consen 359 ACRDQLLSVIRE--------NQVVVIVGETGSGKTTQLAQYLYED-----GYADNGMIGCTQPRRVAAISVAKRVAEEMG 425 (1042)
T ss_pred HHHHHHHHHHhh--------CcEEEEEecCCCCchhhhHHHHHhc-----ccccCCeeeecCchHHHHHHHHHHHHHHhC
Confidence 444555665533 3699999999999999 77777764 23222245555554 34566778888875
Q ss_pred CCCCC---------Cc----------cCHHHHHHHHHhHcCCCeEEEEEecCCCCCccccccccCcc---cCCCCCcEEE
Q 035550 201 SDQIV---------DN----------HDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPF---EAGAPGSKII 258 (1385)
Q Consensus 201 ~~~~~---------~~----------~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l---~~~~~gs~il 258 (1385)
..-.. +. .+.--+.+.|.+..-.|=-.||+|.+++... .-+-+...+ ......-|+|
T Consensus 426 ~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERsl-NtDilfGllk~~larRrdlKli 504 (1042)
T KOG0924|consen 426 VTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSL-NTDILFGLLKKVLARRRDLKLI 504 (1042)
T ss_pred CccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhccc-chHHHHHHHHHHHHhhccceEE
Confidence 43210 00 1112244455555445666899999965432 112222111 2223467999
Q ss_pred EEccchhH---hhhhCCCCcccCCC
Q 035550 259 VTARNQGV---AAIMGTAPAYQLKK 280 (1385)
Q Consensus 259 vTtR~~~v---~~~~~~~~~~~l~~ 280 (1385)
||+-..+. +..++..+.+.+++
T Consensus 505 VtSATm~a~kf~nfFgn~p~f~IpG 529 (1042)
T KOG0924|consen 505 VTSATMDAQKFSNFFGNCPQFTIPG 529 (1042)
T ss_pred EeeccccHHHHHHHhCCCceeeecC
Confidence 99986543 33344333344333
No 299
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.40 E-value=0.006 Score=63.10 Aligned_cols=80 Identities=30% Similarity=0.258 Sum_probs=65.6
Q ss_pred ccCCceeEEEEcCcccccccccccCCccccEEecccccccccc--hhhhccCCccEEecCCCcchhhhhh-----ccccc
Q 035550 527 FKLQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLP--ESVNKLYNLHTLLLEGCRRLKKLCA-----DMGNL 599 (1385)
Q Consensus 527 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP--~~i~~L~~L~~L~L~~~~~l~~lp~-----~i~~L 599 (1385)
.+++.|.||.|+-|.|+.+ ..+..+++|+.|.|+.|.|..+- .-+.+|++|++|.|..|.-...-+. .+.-|
T Consensus 38 ~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L 116 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL 116 (388)
T ss_pred HhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHc
Confidence 7899999999999999988 45889999999999999999776 4568999999999988754444332 25678
Q ss_pred CCCCeeec
Q 035550 600 IKLHHLDN 607 (1385)
Q Consensus 600 ~~L~~L~l 607 (1385)
++|+.||-
T Consensus 117 PnLkKLDn 124 (388)
T KOG2123|consen 117 PNLKKLDN 124 (388)
T ss_pred ccchhccC
Confidence 88888873
No 300
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.40 E-value=0.15 Score=54.83 Aligned_cols=25 Identities=32% Similarity=0.483 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
....+|+|.|+.|+|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999986
No 301
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.40 E-value=0.17 Score=49.82 Aligned_cols=106 Identities=19% Similarity=0.168 Sum_probs=54.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSP 223 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 223 (1385)
-.+++|+|..|.|||||++.+..-.. .....+|+.-.. .+..-. ....-+...-.+-..+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~~--~lS~G~~~rv~laral~~ 87 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYFE--QLSGGEKMRLALAKLLLE 87 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEEc--cCCHHHHHHHHHHHHHhc
Confidence 36899999999999999999987422 223334432100 000000 001111122234444555
Q ss_pred CeEEEEEecCCCC-CccccccccCcccCCCCCcEEEEEccchhHhhh
Q 035550 224 KKFLLVLDDVWNE-NYNDWDRLRPPFEAGAPGSKIIVTARNQGVAAI 269 (1385)
Q Consensus 224 ~~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 269 (1385)
++-++++|+.-.. +....+.+...+... +..||++|.+.+....
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 6678889987321 222233333333322 2468888877655543
No 302
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=0.3 Score=59.78 Aligned_cols=183 Identities=14% Similarity=0.154 Sum_probs=98.6
Q ss_pred CeeeechhHHH---HHHHHHhcCCc---CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHH
Q 035550 117 AKVYGRETEKK---EIVELLLRDDL---RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIR 190 (1385)
Q Consensus 117 ~~~vGr~~~~~---~l~~~L~~~~~---~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 190 (1385)
.++.|-++.++ ++++.|..++. -+..-.+=|.++|++|.|||-||++++-...+ =|+.++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC-------ceeeechH-----
Confidence 46778765555 45555544321 12233566889999999999999999985333 23344332
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCC---------------ccccccccCcccCCCC--
Q 035550 191 LTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNEN---------------YNDWDRLRPPFEAGAP-- 253 (1385)
Q Consensus 191 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---------------~~~~~~l~~~l~~~~~-- 253 (1385)
+.++.+.+.. .. ...+.+...=...++.+.+|++..-. ...+.++...+.....
T Consensus 379 ---EFvE~~~g~~---as---rvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 ---EFVEMFVGVG---AS---RVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ---HHHHHhcccc---hH---HHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 1222221111 11 11112222223567888888872210 0112233333333322
Q ss_pred CcEEEEEccchhHhhhh----C-CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHH
Q 035550 254 GSKIIVTARNQGVAAIM----G-TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAA 324 (1385)
Q Consensus 254 gs~ilvTtR~~~v~~~~----~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 324 (1385)
+--++-+|...++.... + -+..+.++.-+...-.++|..|+-..... .+..++++ |+...-|.+=|.
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHH-HHhcCCCCcHHH
Confidence 23344466655554432 1 24577888888888889999887543321 23445666 888888877543
No 303
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.38 E-value=0.11 Score=59.01 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=40.3
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccc----cCCcEEEEEeCCCCCHHHHHHHHHHHh
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQD----HFDLKAWTCVSDDFDVIRLTKSILLSI 199 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~~ 199 (1385)
+...++-|+|.+|+||||+|.+++....... .-..++|++....++..++.+ +++.+
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~ 153 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEAR 153 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHc
Confidence 3568999999999999999999875322211 113789999988888776543 34443
No 304
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.38 E-value=0.069 Score=55.69 Aligned_cols=209 Identities=15% Similarity=0.174 Sum_probs=109.5
Q ss_pred eeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCc----cccccCCcEEEEEeCCC---------
Q 035550 119 VYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDK----QVQDHFDLKAWTCVSDD--------- 185 (1385)
Q Consensus 119 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~----~~~~~f~~~~wv~~~~~--------- 185 (1385)
+.++++....+...... .+.+-..++|+.|.||-|.+..+.+.. -.+-.-+.+-|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~~------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhccc------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 56777777777776632 346788899999999999876665531 11112234445443322
Q ss_pred ------------CCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeE-EEEEecCCCCCccccccccCcccCCC
Q 035550 186 ------------FDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKF-LLVLDDVWNENYNDWDRLRPPFEAGA 252 (1385)
Q Consensus 186 ------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~~~~~~~~l~~~l~~~~ 252 (1385)
...+.+.++++.++......+. -..+.| ++|+-.+..-+.+.-..++.....-.
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qie~-------------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQIET-------------QGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcchhh-------------ccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 1123445555555544332110 012344 45555552222222223333333334
Q ss_pred CCcEEEEEccch-hHhhhhCC-CCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCc-hHHHHHhh
Q 035550 253 PGSKIIVTARNQ-GVAAIMGT-APAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLP-LAAKTLGG 329 (1385)
Q Consensus 253 ~gs~ilvTtR~~-~v~~~~~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~ 329 (1385)
..+|+|+..-+. .+...+.+ --.+.+...+++|....+++.+-..+- .-+ .+++.+|+++++|.- -||-++-.
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l-~lp---~~~l~rIa~kS~~nLRrAllmlE~ 231 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL-QLP---KELLKRIAEKSNRNLRRALLMLEA 231 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc-cCc---HHHHHHHHHHhcccHHHHHHHHHH
Confidence 556766643321 11111111 235788999999999999887644332 112 578999999999864 34333322
Q ss_pred hhcCC-C--------CHHHHHHHHhhhhhh
Q 035550 330 LLRGK-D--------DRREWEDVLSSKIWE 350 (1385)
Q Consensus 330 ~l~~~-~--------~~~~w~~~l~~~~~~ 350 (1385)
.-.++ + ..-+|+..+.+....
T Consensus 232 ~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 232 VRVNNEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred HHhccccccccCCCCCCccHHHHHHHHHHH
Confidence 21111 1 144788777654433
No 305
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.37 E-value=0.0028 Score=63.62 Aligned_cols=86 Identities=16% Similarity=0.157 Sum_probs=75.1
Q ss_pred ccccCCceeEEEEcCcccccccccccCCccccEEecccccccccchhhhccCCccEEecCCCcchhhhhhcccccCCCCe
Q 035550 525 KLFKLQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHH 604 (1385)
Q Consensus 525 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 604 (1385)
++..++..++||++.|.+..+-..|+.++.|..|+++.|.|..+|..++.+..++.+++..| .....|.++++++.+++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcch
Confidence 45677888999999999888888888899999999999999999999999999999988875 78889999999999999
Q ss_pred eecCCCC
Q 035550 605 LDNLDTG 611 (1385)
Q Consensus 605 L~l~~~~ 611 (1385)
+++-++.
T Consensus 116 ~e~k~~~ 122 (326)
T KOG0473|consen 116 NEQKKTE 122 (326)
T ss_pred hhhccCc
Confidence 9888773
No 306
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.35 E-value=0.16 Score=53.79 Aligned_cols=126 Identities=13% Similarity=0.126 Sum_probs=69.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCC-----CCCHHHHHHHHHHHhcCCCC-----CCccCHHH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD-----DFDVIRLTKSILLSIASDQI-----VDNHDLNK 212 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~ 212 (1385)
+..+++|||..|.||||+|+.+.. ....-.+.++..-.+ .....+-..++++.++.... +..-+-.+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 346899999999999999999996 333333344433211 12233445556666554321 01112222
Q ss_pred HH-HHHHhHcCCCeEEEEEecCCCCC-ccccccccCcccC--CCCCcEEEEEccchhHhhhhC
Q 035550 213 LQ-EELKKKLSPKKFLLVLDDVWNEN-YNDWDRLRPPFEA--GAPGSKIIVTARNQGVAAIMG 271 (1385)
Q Consensus 213 ~~-~~l~~~l~~~~~LlVlDdv~~~~-~~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~~~ 271 (1385)
.+ -.+.+.|.-++-++|.|..-..- ...-.++...+.. ...|-..+..|-+-.++..+.
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 22 24566778889999999862221 0111122222211 134667788888877777653
No 307
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=0.071 Score=62.93 Aligned_cols=71 Identities=23% Similarity=0.248 Sum_probs=46.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCC--CHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF--DVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKL 221 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 221 (1385)
..-|.|.|..|+|||+||+++++... +...-.+..|+++.-. ....+++. +...+.+.+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~------------------l~~vfse~~ 491 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF------------------LNNVFSEAL 491 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH------------------HHHHHHHHH
Confidence 35688999999999999999998533 4444456667766531 12222221 122233445
Q ss_pred CCCeEEEEEecC
Q 035550 222 SPKKFLLVLDDV 233 (1385)
Q Consensus 222 ~~~~~LlVlDdv 233 (1385)
...+-+|||||+
T Consensus 492 ~~~PSiIvLDdl 503 (952)
T KOG0735|consen 492 WYAPSIIVLDDL 503 (952)
T ss_pred hhCCcEEEEcch
Confidence 567889999998
No 308
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.31 E-value=0.096 Score=59.88 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..++.++|++|+||||+|..++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999886
No 309
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.31 E-value=0.087 Score=57.05 Aligned_cols=88 Identities=19% Similarity=0.122 Sum_probs=54.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----------------
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQI----------------- 204 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~----------------- 204 (1385)
+..+++.|+|.+|+|||++|.++... ....=..++|++..+. ..++.+++ .+++....
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~--~~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG--ALKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH--HHhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 45689999999999999999998652 1123356888887654 44444443 22221100
Q ss_pred --CCccCHHHHHHHHHhHcCC-CeEEEEEecCC
Q 035550 205 --VDNHDLNKLQEELKKKLSP-KKFLLVLDDVW 234 (1385)
Q Consensus 205 --~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 234 (1385)
....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666643 55589999973
No 310
>PTZ00301 uridine kinase; Provisional
Probab=94.30 E-value=0.06 Score=56.36 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 46999999999999999998876
No 311
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.11 Score=55.54 Aligned_cols=79 Identities=15% Similarity=0.277 Sum_probs=46.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcc--ccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQ--VQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKL 221 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~--~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 221 (1385)
-|+|.++|++|.|||+|.++++.... ..+.+....-+.++.. .++.+... + ...-...+.+.|.+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFs----E---SgKlV~kmF~kI~ELv 245 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFS----E---SGKLVAKMFQKIQELV 245 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHh----h---hhhHHHHHHHHHHHHH
Confidence 57899999999999999999998643 3344444444443321 22222221 1 1233445556666666
Q ss_pred CCCe--EEEEEecC
Q 035550 222 SPKK--FLLVLDDV 233 (1385)
Q Consensus 222 ~~~~--~LlVlDdv 233 (1385)
.++. +.+.+|.|
T Consensus 246 ~d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEV 259 (423)
T ss_pred hCCCcEEEEEeHHH
Confidence 5544 45567888
No 312
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.24 E-value=0.051 Score=60.03 Aligned_cols=51 Identities=24% Similarity=0.373 Sum_probs=43.8
Q ss_pred CCeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 116 EAKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...|+|.++.++++++.+.......+..-+++.++|+.|.||||||..+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999765543456678999999999999999998876
No 313
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.24 E-value=0.15 Score=59.99 Aligned_cols=87 Identities=15% Similarity=0.087 Sum_probs=46.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF-DVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLS 222 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 222 (1385)
.+++.++|++|+||||++..++........-..+..++..... ...+-++...+.++.... ...+..++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~-~~~~~~~l~~~l~~~-~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE-VVYDPKELAKALEQL-R 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE-ccCCHHhHHHHHHHh-C
Confidence 4699999999999999888876532201222345566543321 111222222333332221 223344555555543 3
Q ss_pred CCeEEEEEecC
Q 035550 223 PKKFLLVLDDV 233 (1385)
Q Consensus 223 ~~~~LlVlDdv 233 (1385)
..=+||+|..
T Consensus 299 -~~DlVlIDt~ 308 (424)
T PRK05703 299 -DCDVILIDTA 308 (424)
T ss_pred -CCCEEEEeCC
Confidence 3457888876
No 314
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.22 E-value=0.031 Score=46.60 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 035550 146 VIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
+|+|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998873
No 315
>PRK15453 phosphoribulokinase; Provisional
Probab=94.20 E-value=0.59 Score=50.46 Aligned_cols=79 Identities=11% Similarity=0.118 Sum_probs=43.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCC--CCCHHHHHHHHH--HHhcCC-CC--CCccCHHHHHH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD--DFDVIRLTKSIL--LSIASD-QI--VDNHDLNKLQE 215 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~--~~~~~~-~~--~~~~~~~~~~~ 215 (1385)
+..+|+|.|.+|+||||+|+.+.+. +...-..++.++... .++..+.-..+. +.-+.. +. ++..+.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~i--f~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~ 81 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKI--FRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQ 81 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 4579999999999999999988852 211111123333222 223333322222 111111 11 35667788888
Q ss_pred HHHhHcCC
Q 035550 216 ELKKKLSP 223 (1385)
Q Consensus 216 ~l~~~l~~ 223 (1385)
.+++..++
T Consensus 82 ~l~~l~~~ 89 (290)
T PRK15453 82 LFREYGET 89 (290)
T ss_pred HHHHHhcC
Confidence 88876553
No 316
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.16 E-value=0.16 Score=55.88 Aligned_cols=89 Identities=18% Similarity=0.225 Sum_probs=47.0
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCH--HHHHHHHHHHhcCCCC--CCccCHHH-HHHH
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDV--IRLTKSILLSIASDQI--VDNHDLNK-LQEE 216 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~~~~~~~--~~~~~~~~-~~~~ 216 (1385)
.+.+++.++|++|+||||.+..++.. ....-..+.++.+. .+.. .+-++..++..+.... ....+... ..+.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 34689999999999999999888763 32222345555543 2322 2223334444432211 01122222 2333
Q ss_pred HHhHcCCCeEEEEEecC
Q 035550 217 LKKKLSPKKFLLVLDDV 233 (1385)
Q Consensus 217 l~~~l~~~~~LlVlDdv 233 (1385)
+........=++++|-.
T Consensus 147 l~~~~~~~~D~ViIDT~ 163 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTA 163 (272)
T ss_pred HHHHHHCCCCEEEEeCC
Confidence 44433344457888876
No 317
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.15 E-value=0.041 Score=60.36 Aligned_cols=95 Identities=22% Similarity=0.271 Sum_probs=47.9
Q ss_pred HHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCC
Q 035550 127 KEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVD 206 (1385)
Q Consensus 127 ~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~ 206 (1385)
..+++.+... .+-|.++|+.|+|||++++.......- ..| .+.-++.+...+...++ .+++.-..... .
T Consensus 23 ~~ll~~l~~~-------~~pvLl~G~~GtGKT~li~~~l~~l~~-~~~-~~~~~~~s~~Tts~~~q-~~ie~~l~k~~-~ 91 (272)
T PF12775_consen 23 SYLLDLLLSN-------GRPVLLVGPSGTGKTSLIQNFLSSLDS-DKY-LVITINFSAQTTSNQLQ-KIIESKLEKRR-G 91 (272)
T ss_dssp HHHHHHHHHC-------TEEEEEESSTTSSHHHHHHHHHHCSTT-CCE-EEEEEES-TTHHHHHHH-HCCCTTECECT-T
T ss_pred HHHHHHHHHc-------CCcEEEECCCCCchhHHHHhhhccCCc-ccc-ceeEeeccCCCCHHHHH-HHHhhcEEcCC-C
Confidence 4455555543 246789999999999999998763211 111 23345555544333332 22221111000 0
Q ss_pred ccCHHHHHHHHHhHcCCCeEEEEEecCCCCCcccc
Q 035550 207 NHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDW 241 (1385)
Q Consensus 207 ~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~ 241 (1385)
....--.+|+.++.+||+.-...+.|
T Consensus 92 ---------~~~gP~~~k~lv~fiDDlN~p~~d~y 117 (272)
T PF12775_consen 92 ---------RVYGPPGGKKLVLFIDDLNMPQPDKY 117 (272)
T ss_dssp ---------EEEEEESSSEEEEEEETTT-S---TT
T ss_pred ---------CCCCCCCCcEEEEEecccCCCCCCCC
Confidence 00001147899999999944443443
No 318
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.15 E-value=0.03 Score=54.11 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=19.2
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 035550 147 IPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 147 v~i~G~gGiGKTtLa~~v~~~ 167 (1385)
|+|.|..|+||||+|+++...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999873
No 319
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.13 E-value=0.16 Score=51.68 Aligned_cols=115 Identities=17% Similarity=0.239 Sum_probs=58.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCc---ccccc---CC--cEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CCccCH
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDK---QVQDH---FD--LKAWTCVSDDFDVIRLTKSILLSIASDQI-----VDNHDL 210 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~---~~~~~---f~--~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~ 210 (1385)
-.+++|+|+.|+|||||.+.+..+. .+... |. .+.|+ .+ .+.++.++.... ...-+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 4689999999999999999986321 11111 10 12232 11 345555554321 011111
Q ss_pred -HHHHHHHHhHcCCC--eEEEEEecCCCC-CccccccccCcccCC-CCCcEEEEEccchhHhh
Q 035550 211 -NKLQEELKKKLSPK--KFLLVLDDVWNE-NYNDWDRLRPPFEAG-APGSKIIVTARNQGVAA 268 (1385)
Q Consensus 211 -~~~~~~l~~~l~~~--~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 268 (1385)
+...-.+...+..+ +=++++|+--.. +....+.+...+... ..|..||++|.+.+...
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 12222344444455 668888986322 122223333333221 24667888888876654
No 320
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.09 E-value=0.27 Score=54.56 Aligned_cols=59 Identities=15% Similarity=0.108 Sum_probs=38.1
Q ss_pred eeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHH
Q 035550 119 VYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIR 190 (1385)
Q Consensus 119 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 190 (1385)
++=..+....+..++... +.|.|.|.+|+||||+|+.++.. .... .+.|.++...+..+
T Consensus 47 y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~~--l~~~---~~rV~~~~~l~~~D 105 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAAR--LNWP---CVRVNLDSHVSRID 105 (327)
T ss_pred ccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHHH--HCCC---eEEEEecCCCChhh
Confidence 444445566677777432 35889999999999999999873 3222 23455555544433
No 321
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.08 E-value=0.22 Score=50.42 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 322
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.06 E-value=0.087 Score=58.42 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=23.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
...+.++|||++|.|||.+|+++++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999984
No 323
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.03 E-value=0.16 Score=51.98 Aligned_cols=21 Identities=43% Similarity=0.604 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 035550 146 VIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
++.++|++|+||||+++.++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999886
No 324
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.99 E-value=0.25 Score=57.28 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...+|.++|..|+||||+|..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988875
No 325
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.1 Score=64.16 Aligned_cols=155 Identities=15% Similarity=0.251 Sum_probs=80.2
Q ss_pred eeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCc---cccccC-CcEEEEEeCCCCCHHHHHH
Q 035550 118 KVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDK---QVQDHF-DLKAWTCVSDDFDVIRLTK 193 (1385)
Q Consensus 118 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~---~~~~~f-~~~~wv~~~~~~~~~~~~~ 193 (1385)
.++||++|++++++.|..... +.+ .++|.+|+|||++|.-++... .+-... +..++. -
T Consensus 171 PvIGRd~EI~r~iqIL~RR~K----NNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s------------L 232 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTK----NNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS------------L 232 (786)
T ss_pred CCcChHHHHHHHHHHHhccCC----CCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE------------e
Confidence 479999999999999976532 122 367999999999876665421 111110 111111 0
Q ss_pred HHHHHhcCCCCCCccCHHHHHHHHHhHc-CCCeEEEEEecCCCCC---------ccccccccCcccCCCCCcEEEEEccc
Q 035550 194 SILLSIASDQIVDNHDLNKLQEELKKKL-SPKKFLLVLDDVWNEN---------YNDWDRLRPPFEAGAPGSKIIVTARN 263 (1385)
Q Consensus 194 ~i~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~gs~ilvTtR~ 263 (1385)
++..-+.+.. -..+.++....+.+.+ +.++..|++|.++.-- .+.-.-+++.+.. +.--.|-.||-+
T Consensus 233 D~g~LvAGak--yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT~~ 309 (786)
T COG0542 233 DLGSLVAGAK--YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATTLD 309 (786)
T ss_pred cHHHHhcccc--ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEeccHH
Confidence 1111111111 1223444444444444 3458999999984310 1111122222222 222234445543
Q ss_pred hhHhhhh-------CCCCcccCCCCChhhhHHHhhhhc
Q 035550 264 QGVAAIM-------GTAPAYQLKKLSNDDCLSVFAQHS 294 (1385)
Q Consensus 264 ~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a 294 (1385)
+--..+ ..-..+.+..-+.+++...++-..
T Consensus 310 -EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 310 -EYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred -HHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 332222 123578888889999988886543
No 326
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.98 E-value=0.13 Score=51.99 Aligned_cols=117 Identities=17% Similarity=0.091 Sum_probs=59.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCC--CCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD--DFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKL 221 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 221 (1385)
..+++|+|..|.|||||.+.++... ......+++.-.. ..+..+..+ ..++... ....-+...-.+.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~--qLS~G~~qrl~laral 97 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMVY--QLSVGERQMVEIARAL 97 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEEE--ecCHHHHHHHHHHHHH
Confidence 3589999999999999999998732 2234444442111 111111111 1111100 1111122223344455
Q ss_pred CCCeEEEEEecCCCC-CccccccccCcccCC-CCCcEEEEEccchhHhh
Q 035550 222 SPKKFLLVLDDVWNE-NYNDWDRLRPPFEAG-APGSKIIVTARNQGVAA 268 (1385)
Q Consensus 222 ~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 268 (1385)
-.++-++++|+.-.. +....+.+...+... ..|..||++|.+.+...
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 566778889987322 222233333333221 23667888888876444
No 327
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.98 E-value=0.18 Score=51.50 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
..+++|+|..|.|||||.+.++.-
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 458999999999999999999873
No 328
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=93.96 E-value=0.1 Score=59.26 Aligned_cols=46 Identities=24% Similarity=0.229 Sum_probs=36.3
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..++|+...+.++.+.+..... .-.-|.|+|..|+||+++|+.++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHH
Confidence 3588999999999888765422 223577999999999999999986
No 329
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.32 Score=57.60 Aligned_cols=56 Identities=23% Similarity=0.188 Sum_probs=36.0
Q ss_pred CeeeechhHHHHHHHHHhcCCc-------CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccC
Q 035550 117 AKVYGRETEKKEIVELLLRDDL-------RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF 174 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f 174 (1385)
.++=|.|+-+.+|.+...-+-. -+-...+-|..+|++|.|||++|+++++. .+..|
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF 496 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNF 496 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCe
Confidence 3444577666666654422110 02234567889999999999999999983 34444
No 330
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.94 E-value=0.25 Score=54.42 Aligned_cols=80 Identities=16% Similarity=0.090 Sum_probs=43.2
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccC--CcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHh
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF--DLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKK 219 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~ 219 (1385)
....+|+|.|..|+||||+|+.+..- ..... ..+..++...-..........- .+.....+...+.+.+.+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l--l~~~~~~g~V~vi~~D~f~~~~~~l~~~g-~~~~~g~P~s~D~~~l~~~L~~ 136 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL--LSRWPEHRKVELITTDGFLHPNQVLKERN-LMKKKGFPESYDMHRLVKFLSD 136 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH--HhhcCCCCceEEEecccccccHHHHHHcC-CccccCCChhccHHHHHHHHHH
Confidence 34679999999999999999877541 21111 1244444433222222222211 1111122356677777777766
Q ss_pred HcCCC
Q 035550 220 KLSPK 224 (1385)
Q Consensus 220 ~l~~~ 224 (1385)
.-.++
T Consensus 137 Lk~g~ 141 (290)
T TIGR00554 137 LKSGK 141 (290)
T ss_pred HHCCC
Confidence 65554
No 331
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.94 E-value=0.19 Score=51.10 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
-.+++|+|..|+|||||++.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 35899999999999999999986
No 332
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=93.94 E-value=0.16 Score=55.48 Aligned_cols=132 Identities=21% Similarity=0.292 Sum_probs=68.7
Q ss_pred echhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCc-cccccCCcEEE----EEeCCCCC--------
Q 035550 121 GRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDK-QVQDHFDLKAW----TCVSDDFD-------- 187 (1385)
Q Consensus 121 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~-~~~~~f~~~~w----v~~~~~~~-------- 187 (1385)
+|..+-.--.++|+.+ ++..|.+.|.+|.|||-||.+..=.. ..++.|..++- +.+.++..
T Consensus 228 prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEe 301 (436)
T COG1875 228 PRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEE 301 (436)
T ss_pred cccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhh
Confidence 3555555556667554 57899999999999999987654211 22334443322 22333211
Q ss_pred -HHHHHHHHH---HHhcCCCCCCccCHHHHHHHH---------HhHcCCC---eEEEEEecCCCCCccccccccCcccCC
Q 035550 188 -VIRLTKSIL---LSIASDQIVDNHDLNKLQEEL---------KKKLSPK---KFLLVLDDVWNENYNDWDRLRPPFEAG 251 (1385)
Q Consensus 188 -~~~~~~~i~---~~~~~~~~~~~~~~~~~~~~l---------~~~l~~~---~~LlVlDdv~~~~~~~~~~l~~~l~~~ 251 (1385)
+.-.++.|. +.+....... ...+...+ -.+++++ +-++|+|...+-+..+ ++..+...
T Consensus 302 Km~PWmq~i~DnLE~L~~~~~~~---~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTphe---ikTiltR~ 375 (436)
T COG1875 302 KMGPWMQAIFDNLEVLFSPNEPG---DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHE---LKTILTRA 375 (436)
T ss_pred hccchHHHHHhHHHHHhcccccc---hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHH---HHHHHHhc
Confidence 111222222 2222222111 11222211 1123443 3489999996654444 44445556
Q ss_pred CCCcEEEEEccch
Q 035550 252 APGSKIIVTARNQ 264 (1385)
Q Consensus 252 ~~gs~ilvTtR~~ 264 (1385)
+.||||+.|---.
T Consensus 376 G~GsKIVl~gd~a 388 (436)
T COG1875 376 GEGSKIVLTGDPA 388 (436)
T ss_pred cCCCEEEEcCCHH
Confidence 8999999886543
No 333
>PRK05439 pantothenate kinase; Provisional
Probab=93.93 E-value=0.26 Score=54.67 Aligned_cols=81 Identities=16% Similarity=0.053 Sum_probs=45.2
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCcccccc--CCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHh
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDH--FDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKK 219 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~ 219 (1385)
...-+|+|.|.+|+||||+|+.+.. ..... -..+.-++...-+...+.+..- ..+.....++..+.+.+.+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~~ 160 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLSD 160 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHHH
Confidence 4567999999999999999998876 22211 1223334433322222222110 11111222356677777777777
Q ss_pred HcCCCe
Q 035550 220 KLSPKK 225 (1385)
Q Consensus 220 ~l~~~~ 225 (1385)
..+++.
T Consensus 161 Lk~G~~ 166 (311)
T PRK05439 161 VKSGKP 166 (311)
T ss_pred HHcCCC
Confidence 666665
No 334
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.93 E-value=0.24 Score=55.72 Aligned_cols=89 Identities=15% Similarity=0.104 Sum_probs=52.0
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhH
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF-DVIRLTKSILLSIASDQIVDNHDLNKLQEELKKK 220 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (1385)
...+++.++|+.|+||||++..++... ...-..+.++++.... ....-++...+.++.... ...+..++.+.+...
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l--~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~-~~~dp~dL~~al~~l 280 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQL--LKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI-VATSPAELEEAVQYM 280 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE-ecCCHHHHHHHHHHH
Confidence 346899999999999999999887632 2222345666654322 233344455555543322 234566665555443
Q ss_pred cC-CCeEEEEEecC
Q 035550 221 LS-PKKFLLVLDDV 233 (1385)
Q Consensus 221 l~-~~~~LlVlDdv 233 (1385)
-. +..=+|++|-.
T Consensus 281 ~~~~~~D~VLIDTA 294 (407)
T PRK12726 281 TYVNCVDHILIDTV 294 (407)
T ss_pred HhcCCCCEEEEECC
Confidence 21 33457778876
No 335
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=93.91 E-value=0.25 Score=60.89 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=38.1
Q ss_pred CCeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 116 EAKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
...++|....++++.+.+..... ....|.|+|..|+|||++|+.+++.
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHh
Confidence 45789999999999888754321 2235679999999999999999874
No 336
>PRK06547 hypothetical protein; Provisional
Probab=93.89 E-value=0.071 Score=53.94 Aligned_cols=26 Identities=38% Similarity=0.442 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
....+|+|.|.+|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999999863
No 337
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.87 E-value=0.05 Score=57.58 Aligned_cols=24 Identities=42% Similarity=0.520 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...+|+|+|++|+||||||+.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999986
No 338
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.86 E-value=0.11 Score=56.64 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=17.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
+.|.|.|.+|+||||+|+++..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~ 23 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKK 23 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHH
Confidence 4688999999999999999987
No 339
>PRK14974 cell division protein FtsY; Provisional
Probab=93.85 E-value=0.21 Score=56.33 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=46.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCC--CHHHHHHHHHHHhcCCCCC--CccCHHH-HHHHH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF--DVIRLTKSILLSIASDQIV--DNHDLNK-LQEEL 217 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~~~~~~~~--~~~~~~~-~~~~l 217 (1385)
+..+|.++|++|+||||++..++.... ...+ .++.+. .+.+ ...+-++..+..++..... ...+... ..+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999998888776321 1223 233343 2222 2223344555555543211 1122222 22333
Q ss_pred HhHcCCCeEEEEEecCCC
Q 035550 218 KKKLSPKKFLLVLDDVWN 235 (1385)
Q Consensus 218 ~~~l~~~~~LlVlDdv~~ 235 (1385)
...-....=++++|-.-.
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 322222223888998743
No 340
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.81 E-value=0.12 Score=59.93 Aligned_cols=85 Identities=18% Similarity=0.201 Sum_probs=48.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCCccCH--------
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQ-----IVDNHDL-------- 210 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~-------- 210 (1385)
...++|+|..|+|||||++.+..... ....++|..--...++.++....+....... ..+....
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 45799999999999999999886322 2234444433234455554444443332111 0011011
Q ss_pred -HHHHHHHHhHcCCCeEEEEEecC
Q 035550 211 -NKLQEELKKKLSPKKFLLVLDDV 233 (1385)
Q Consensus 211 -~~~~~~l~~~l~~~~~LlVlDdv 233 (1385)
-.+.+.++. +++.+|+++||+
T Consensus 242 a~~iAEyfrd--~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRD--RGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHH--cCCCEEEeccch
Confidence 112333443 489999999999
No 341
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.80 E-value=0.17 Score=54.69 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=34.9
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHH
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKS 194 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 194 (1385)
+..+++.|.|.+|+|||++|.++... ....-..++|++... +..++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~--~~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEEeeC--CHHHHHHH
Confidence 45689999999999999999987652 113345688887655 44455554
No 342
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.79 E-value=0.031 Score=51.94 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=18.2
Q ss_pred EEEEcCCCChHHHHHHHHhcCccccccCC
Q 035550 147 IPIIGMGGLGKTTLAQLVYNDKQVQDHFD 175 (1385)
Q Consensus 147 v~i~G~gGiGKTtLa~~v~~~~~~~~~f~ 175 (1385)
|.|+|.+|+||||+|+.++. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999997 4555554
No 343
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.79 E-value=0.049 Score=57.81 Aligned_cols=25 Identities=40% Similarity=0.597 Sum_probs=22.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
+..+|+|+|.+|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999873
No 344
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=93.79 E-value=0.28 Score=55.50 Aligned_cols=59 Identities=20% Similarity=0.107 Sum_probs=41.6
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCcccc----ccCCcEEEEEeCCCCCHHHHHHHHHHHhcC
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQ----DHFDLKAWTCVSDDFDVIRLTKSILLSIAS 201 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 201 (1385)
....++-|+|.+|+|||++|..++-..... ..-..++|++....|+..++. ++++.++.
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 346789999999999999998877421111 112368999999988887764 45555543
No 345
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.77 E-value=0.04 Score=55.70 Aligned_cols=24 Identities=50% Similarity=0.523 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
..+|+|-||=|+||||||+.++++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999984
No 346
>PTZ00494 tuzin-like protein; Provisional
Probab=93.77 E-value=1 Score=50.90 Aligned_cols=170 Identities=14% Similarity=0.138 Sum_probs=104.7
Q ss_pred cCccCCeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHH
Q 035550 112 SLVNEAKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRL 191 (1385)
Q Consensus 112 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 191 (1385)
.......+|.|++|-..+.+.|.+.+. ...+++.+.|.-|.||++|.+.....+.. ..++|.+....| -
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~ED---t 434 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTED---T 434 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCcc---h
Confidence 344567799999999999999977654 56799999999999999999988764332 467788877654 4
Q ss_pred HHHHHHHhcCCCCCCccC-HHHHHHHH---HhHcCCCeEEEEEecCCCCCc-cccccccCcccCCCCCcEEEEEccchhH
Q 035550 192 TKSILLSIASDQIVDNHD-LNKLQEEL---KKKLSPKKFLLVLDDVWNENY-NDWDRLRPPFEAGAPGSKIIVTARNQGV 266 (1385)
Q Consensus 192 ~~~i~~~~~~~~~~~~~~-~~~~~~~l---~~~l~~~~~LlVlDdv~~~~~-~~~~~l~~~l~~~~~gs~ilvTtR~~~v 266 (1385)
++.+++.++......--| ++-+.+.. +....++.-+||+-==...+. ..+.+.. .+.....-|+|++----+.+
T Consensus 435 LrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESL 513 (664)
T PTZ00494 435 LRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKAL 513 (664)
T ss_pred HHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhh
Confidence 778888888765422222 22233322 223456666666542210110 0111111 12233455777775544433
Q ss_pred hhhh---CCCCcccCCCCChhhhHHHhhhh
Q 035550 267 AAIM---GTAPAYQLKKLSNDDCLSVFAQH 293 (1385)
Q Consensus 267 ~~~~---~~~~~~~l~~L~~~~~~~lf~~~ 293 (1385)
.... ..-..|-+++++.++|.++-.+.
T Consensus 514 T~~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 514 TPLNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred chhhccCccceeEecCCcCHHHHHHHHhcc
Confidence 2221 12257889999999998887654
No 347
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.76 E-value=0.21 Score=57.50 Aligned_cols=88 Identities=15% Similarity=0.136 Sum_probs=50.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccc--ccCCcEEEEEeCCCCC--HHHHHHHHHHHhcCCCCCCccCHHHHHHHHH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQ--DHFDLKAWTCVSDDFD--VIRLTKSILLSIASDQIVDNHDLNKLQEELK 218 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~ 218 (1385)
..++|.++|+.|+||||.+..++...... .+-..+..+++. .+. ...-++..++.++..-. ...+.+.+...+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~-~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVK-AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceE-eeCcHHHHHHHHH
Confidence 45799999999999999998887632211 111234444443 332 22224444554544322 2334455555555
Q ss_pred hHcCCCeEEEEEecCC
Q 035550 219 KKLSPKKFLLVLDDVW 234 (1385)
Q Consensus 219 ~~l~~~~~LlVlDdv~ 234 (1385)
+. .+.-++++|..-
T Consensus 251 ~~--~~~DlVLIDTaG 264 (388)
T PRK12723 251 QS--KDFDLVLVDTIG 264 (388)
T ss_pred Hh--CCCCEEEEcCCC
Confidence 43 345588889873
No 348
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.74 E-value=0.083 Score=50.19 Aligned_cols=40 Identities=23% Similarity=0.158 Sum_probs=28.9
Q ss_pred hHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 124 TEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 124 ~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
++.+++.+.+...- ....+|.+.|.-|+||||+++.+++.
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 45555555554321 12358999999999999999999874
No 349
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.73 E-value=0.064 Score=57.03 Aligned_cols=20 Identities=35% Similarity=0.659 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 035550 147 IPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 147 v~i~G~gGiGKTtLa~~v~~ 166 (1385)
|.|+|++|+||||+|+.+++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999986
No 350
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.71 E-value=0.047 Score=53.87 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 035550 146 VIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999885
No 351
>PTZ00035 Rad51 protein; Provisional
Probab=93.70 E-value=0.26 Score=55.91 Aligned_cols=58 Identities=17% Similarity=0.096 Sum_probs=39.3
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCcccc----ccCCcEEEEEeCCCCCHHHHHHHHHHHhc
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQ----DHFDLKAWTCVSDDFDVIRLTKSILLSIA 200 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 200 (1385)
+...++.|+|.+|+|||||+..++-..... ..-..++|++....++..++ .+++++.+
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 456899999999999999999886432211 12235679888777777663 34444443
No 352
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.68 E-value=0.029 Score=56.68 Aligned_cols=40 Identities=23% Similarity=0.137 Sum_probs=29.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccc-ccCCcEEEEEeCCC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQ-DHFDLKAWTCVSDD 185 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~ 185 (1385)
..++.+.|+.|+|||.+|+.++. .+. +.....+-++++.-
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcc
Confidence 46788999999999999999987 333 33445555665553
No 353
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.67 E-value=0.093 Score=58.15 Aligned_cols=85 Identities=21% Similarity=0.121 Sum_probs=51.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCC----CCccCHHHHHHHH
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQI----VDNHDLNKLQEEL 217 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~l 217 (1385)
+..+++-|+|..|+||||||..+.. ..+..-..++|+.....++... +++++.+.. ......++....+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHH
Confidence 4567999999999999999999886 3444556789999888776643 333333211 0122344444555
Q ss_pred HhHcC-CCeEEEEEecC
Q 035550 218 KKKLS-PKKFLLVLDDV 233 (1385)
Q Consensus 218 ~~~l~-~~~~LlVlDdv 233 (1385)
.+.++ +.--++|+|-|
T Consensus 124 e~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHHTTSESEEEEE-C
T ss_pred HHHhhcccccEEEEecC
Confidence 55554 44458899998
No 354
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.64 E-value=0.29 Score=52.01 Aligned_cols=124 Identities=15% Similarity=0.226 Sum_probs=66.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcc-----cc--c----cC---CcEEEEEeCCCC------CH---------------
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQ-----VQ--D----HF---DLKAWTCVSDDF------DV--------------- 188 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~-----~~--~----~f---~~~~wv~~~~~~------~~--------------- 188 (1385)
..+++|+|+.|.|||||.+.+..-.. +. . .+ ..+.||.-...+ ++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 36899999999999999999976211 10 0 01 234555321111 11
Q ss_pred -------HHHHHHHHHHhcCCCC----CCccCHHHHH-HHHHhHcCCCeEEEEEecCCC----CCccccccccCcccCCC
Q 035550 189 -------IRLTKSILLSIASDQI----VDNHDLNKLQ-EELKKKLSPKKFLLVLDDVWN----ENYNDWDRLRPPFEAGA 252 (1385)
Q Consensus 189 -------~~~~~~i~~~~~~~~~----~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~----~~~~~~~~l~~~l~~~~ 252 (1385)
.+...+.+++++.... ...-+-.+.+ -.+.+.|..++=|+|||.--. ......-++...+..
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~-- 187 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ-- 187 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--
Confidence 1334444555443221 1122222333 345666778888999997421 111223333444443
Q ss_pred CCcEEEEEccchhHhhh
Q 035550 253 PGSKIIVTARNQGVAAI 269 (1385)
Q Consensus 253 ~gs~ilvTtR~~~v~~~ 269 (1385)
.|..||++|-+-.....
T Consensus 188 eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 188 EGKTVLMVTHDLGLVMA 204 (254)
T ss_pred CCCEEEEEeCCcHHhHh
Confidence 38889999988655443
No 355
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.61 E-value=0.24 Score=49.43 Aligned_cols=118 Identities=16% Similarity=0.110 Sum_probs=61.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEE---EEEeCCCCCHHHHHHHHHHHh---cCC-CCC---CccC---HH
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKA---WTCVSDDFDVIRLTKSILLSI---ASD-QIV---DNHD---LN 211 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~---wv~~~~~~~~~~~~~~i~~~~---~~~-~~~---~~~~---~~ 211 (1385)
..|-|++-.|.||||.|..++-. ...+=..+. |+.-.........++...-.+ +.. ... ...+ ..
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~r--a~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALR--ALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHH--HHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 57778888999999999877652 222212222 333222234444444430000 100 000 0011 22
Q ss_pred HHHHHHHhHcCCCeE-EEEEecCCCC---CccccccccCcccCCCCCcEEEEEccch
Q 035550 212 KLQEELKKKLSPKKF-LLVLDDVWNE---NYNDWDRLRPPFEAGAPGSKIIVTARNQ 264 (1385)
Q Consensus 212 ~~~~~l~~~l~~~~~-LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 264 (1385)
...+..++.+...+| ++|||.+-.. ..-+.+++...+.....+..||+|-|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 233444555555555 9999998211 1123345555565556677999999986
No 356
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.53 E-value=0.097 Score=53.48 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 035550 146 VIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 357
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.49 E-value=0.2 Score=63.69 Aligned_cols=62 Identities=16% Similarity=0.133 Sum_probs=42.4
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCC
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD 184 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 184 (1385)
..++|+...+.++.+.+..... .-.-|.|+|..|+|||++|+.+++.... .-...+.+++..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~r--~~~~~v~i~c~~ 437 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSGR--NNRRMVKMNCAA 437 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcCC--CCCCeEEEeccc
Confidence 3689999999998777654321 2246789999999999999999874211 122344555554
No 358
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.49 E-value=0.44 Score=59.14 Aligned_cols=87 Identities=20% Similarity=0.200 Sum_probs=49.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD-DFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLS 222 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 222 (1385)
..||+++|+.|+||||.+.+++...........+..+.... .....+-++...+.++.... ...+.+++.+.+.+ ++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~-~~~~~~~l~~al~~-~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH-AVKDAADLRFALAA-LG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc-ccCCHHHHHHHHHH-hc
Confidence 47999999999999999988886322111112344544322 11233445555555554332 23355666555543 44
Q ss_pred CCeEEEEEecC
Q 035550 223 PKKFLLVLDDV 233 (1385)
Q Consensus 223 ~~~~LlVlDdv 233 (1385)
++. +|++|=.
T Consensus 263 ~~D-~VLIDTA 272 (767)
T PRK14723 263 DKH-LVLIDTV 272 (767)
T ss_pred CCC-EEEEeCC
Confidence 443 6777766
No 359
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.43 E-value=0.039 Score=50.98 Aligned_cols=21 Identities=48% Similarity=0.608 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 035550 147 IPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 147 v~i~G~gGiGKTtLa~~v~~~ 167 (1385)
|.|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999998874
No 360
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.40 E-value=0.15 Score=57.19 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=18.6
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 035550 147 IPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 147 v~i~G~gGiGKTtLa~~v~~~ 167 (1385)
+.+.|++|+||||+|+.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999863
No 361
>PHA00729 NTP-binding motif containing protein
Probab=93.38 E-value=0.091 Score=54.81 Aligned_cols=24 Identities=42% Similarity=0.422 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
+...|.|+|.+|+||||||..+.+
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 345788999999999999999987
No 362
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.37 E-value=0.057 Score=57.04 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 37899999999999999998873
No 363
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.36 E-value=0.31 Score=56.03 Aligned_cols=83 Identities=18% Similarity=0.166 Sum_probs=48.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CccCHHHHHHHHH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIV----DNHDLNKLQEELK 218 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~l~ 218 (1385)
...++.|.|.+|+|||||+.+++.. ....-..++|++..+. ..++. .-+..++..... ...+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 4579999999999999999998863 2223346777765432 33322 223344432110 1233444444443
Q ss_pred hHcCCCeEEEEEecC
Q 035550 219 KKLSPKKFLLVLDDV 233 (1385)
Q Consensus 219 ~~l~~~~~LlVlDdv 233 (1385)
+ .+.-++|+|.+
T Consensus 156 ~---~~~~lVVIDSI 167 (372)
T cd01121 156 E---LKPDLVIIDSI 167 (372)
T ss_pred h---cCCcEEEEcch
Confidence 2 35567888887
No 364
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.36 E-value=0.38 Score=53.59 Aligned_cols=53 Identities=21% Similarity=0.151 Sum_probs=36.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHh
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSI 199 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~ 199 (1385)
..++.|.|.+|+||||+|.+++.... ..+=..++|++... +..++...+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 45888999999999999999876422 22134578887655 3455666655443
No 365
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=0.41 Score=55.92 Aligned_cols=154 Identities=17% Similarity=0.279 Sum_probs=84.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSP 223 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 223 (1385)
..-|.+||++|.|||-||++|++. ....| +++..+ +++...+ + .+...+...+.+.=..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP----ELlNkYV----G------ESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP----ELLNKYV----G------ESERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH----HHHHHHh----h------hHHHHHHHHHHHhhcC
Confidence 445789999999999999999994 33344 333332 1222111 1 1112223333333356
Q ss_pred CeEEEEEecCCCC-----Ccccc------ccccCcccC--CCCCcEEEEEccchhHhhhh--C---CCCcccCCCCChhh
Q 035550 224 KKFLLVLDDVWNE-----NYNDW------DRLRPPFEA--GAPGSKIIVTARNQGVAAIM--G---TAPAYQLKKLSNDD 285 (1385)
Q Consensus 224 ~~~LlVlDdv~~~-----~~~~~------~~l~~~l~~--~~~gs~ilvTtR~~~v~~~~--~---~~~~~~l~~L~~~~ 285 (1385)
.+++|.+|.+..- +...| .++...+.. ...|.-||-.|-.+++.... . -+...-|+.-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 8999999998221 11111 223333332 23566778777766654432 1 13466677778888
Q ss_pred hHHHhhhhccCcCC-CCCchhHHHHHHHHHHhcCCC
Q 035550 286 CLSVFAQHSLGTRD-FSSNKSLEEIGKKIVIKCNGL 320 (1385)
Q Consensus 286 ~~~lf~~~a~~~~~-~~~~~~~~~~~~~i~~~~~g~ 320 (1385)
-.++++........ ...+-.++++|+. .+|.|.
T Consensus 684 R~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gf 717 (802)
T KOG0733|consen 684 RVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGF 717 (802)
T ss_pred HHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCC
Confidence 88888877643221 1233456665542 344454
No 366
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=93.35 E-value=0.16 Score=57.68 Aligned_cols=45 Identities=24% Similarity=0.191 Sum_probs=33.5
Q ss_pred eeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 119 VYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 119 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
++|+...+.++.+.+..... .-.-|.|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHh
Confidence 46777777777777654321 2245789999999999999999863
No 367
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.33 E-value=0.29 Score=47.16 Aligned_cols=82 Identities=20% Similarity=0.239 Sum_probs=32.6
Q ss_pred hcCCCCCCcEEeecCCCCccccC-CCCCCccCcceEEeccccCcccc-cccCCCCCccceeeccccCCCCCCcccCCCCC
Q 035550 1157 RLDNNTSLETISIDSCGNLVSFP-EGGLPCVKLRMLAITNCKRLEAL-PKGLHNLTSLQELTIGIGGALPSLEEEDGLPT 1234 (1385)
Q Consensus 1157 ~l~~l~~L~~L~L~~n~~l~~~~-~~~~~l~~L~~L~L~~n~~~~~l-p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~ 1234 (1385)
.|.++++|+.+.+.. . +..++ ..+..+++|+.+.+.++ +..+ ...|.++++|+.+.+.. .....-...+..++
T Consensus 7 ~F~~~~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-T-IKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC-C-eeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccc
Confidence 355556666666653 2 22332 33445556666666553 2222 23455555666666643 21111122334455
Q ss_pred CcceeEecC
Q 035550 1235 NLQSLNIWG 1243 (1385)
Q Consensus 1235 ~L~~L~L~~ 1243 (1385)
+|+.+++..
T Consensus 82 ~l~~i~~~~ 90 (129)
T PF13306_consen 82 NLKNIDIPS 90 (129)
T ss_dssp TECEEEETT
T ss_pred cccccccCc
Confidence 555555543
No 368
>COG4240 Predicted kinase [General function prediction only]
Probab=93.32 E-value=0.2 Score=50.65 Aligned_cols=83 Identities=16% Similarity=0.083 Sum_probs=54.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHh----cCCCCCCccCHHHHHHHHH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSI----ASDQIVDNHDLNKLQEELK 218 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~l~ 218 (1385)
..-+++|.|+-|.||||+|..+++....+.. ..++..+..+-+-...-...++++. .....++.++..-+...+.
T Consensus 49 rPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVLn 127 (300)
T COG4240 49 RPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVLN 127 (300)
T ss_pred CceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHHH
Confidence 4679999999999999999999985333322 4566665554443334444455553 2233346788888888888
Q ss_pred hHcCCCeE
Q 035550 219 KKLSPKKF 226 (1385)
Q Consensus 219 ~~l~~~~~ 226 (1385)
...+++.-
T Consensus 128 ai~~g~~~ 135 (300)
T COG4240 128 AIARGGPT 135 (300)
T ss_pred HHhcCCCC
Confidence 88777643
No 369
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.31 E-value=0.12 Score=52.99 Aligned_cols=21 Identities=48% Similarity=0.627 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 035550 146 VIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
+|+|.|.+|+||||+|+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 370
>PRK06762 hypothetical protein; Provisional
Probab=93.30 E-value=0.061 Score=54.69 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+|.|.|++|+||||+|+++.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999986
No 371
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.26 E-value=0.098 Score=55.04 Aligned_cols=60 Identities=25% Similarity=0.256 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCH
Q 035550 125 EKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDV 188 (1385)
Q Consensus 125 ~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 188 (1385)
+..++++.+.... .+..+|+|.|.||+|||||..++....+.+++=-.++-|+-|.+++-
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tG 73 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTG 73 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC-
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCC
Confidence 4556666665432 34679999999999999999888764332222233444554555543
No 372
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.21 E-value=0.07 Score=53.10 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=19.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
+.|.+.|.+|+||||+|+++++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 4677899999999999999987
No 373
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.17 E-value=1.1 Score=47.61 Aligned_cols=95 Identities=22% Similarity=0.294 Sum_probs=57.0
Q ss_pred CeeeechhHHHHHHHHHhcCCc------CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDL------RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIR 190 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 190 (1385)
.++-|-|..++.|.+...-+-. ......+-|.++|++|.||+-||++|+.... ..| .++|..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--STF-----FSvSSS----- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--STF-----FSVSSS----- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--Cce-----EEeehH-----
Confidence 3567888888888776532110 0223478899999999999999999998422 223 333332
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHHHhHc-CCCeEEEEEecC
Q 035550 191 LTKSILLSIASDQIVDNHDLNKLQEELKKKL-SPKKFLLVLDDV 233 (1385)
Q Consensus 191 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv 233 (1385)
++.....++ .+.++..+.+.- .+|+-+|.+|.+
T Consensus 201 ---DLvSKWmGE-------SEkLVknLFemARe~kPSIIFiDEi 234 (439)
T KOG0739|consen 201 ---DLVSKWMGE-------SEKLVKNLFEMARENKPSIIFIDEI 234 (439)
T ss_pred ---HHHHHHhcc-------HHHHHHHHHHHHHhcCCcEEEeehh
Confidence 122222211 223444444333 368889999988
No 374
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.16 E-value=0.17 Score=53.09 Aligned_cols=83 Identities=22% Similarity=0.338 Sum_probs=50.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCC-CCHHHHHHHHHHHhcCCCC-----CCccCH--------
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD-FDVIRLTKSILLSIASDQI-----VDNHDL-------- 210 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~-----~~~~~~-------- 210 (1385)
..++|.|.+|+|||+|++++.+.. .-+.++++-+.+. ....++.+++...-..+.. ......
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 578899999999999999998743 2234477777765 3455555555433111100 011111
Q ss_pred --HHHHHHHHhHcCCCeEEEEEecC
Q 035550 211 --NKLQEELKKKLSPKKFLLVLDDV 233 (1385)
Q Consensus 211 --~~~~~~l~~~l~~~~~LlVlDdv 233 (1385)
-...+.++. +++.+|+++||+
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETH
T ss_pred cchhhhHHHhh--cCCceeehhhhh
Confidence 112334444 699999999999
No 375
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.12 E-value=0.22 Score=54.51 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=30.3
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCC
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD 184 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 184 (1385)
+..+++.|.|.+|+|||++|.+++... ...=..+++++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~--a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQ--ASRGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHH--HhCCCcEEEEEecC
Confidence 456799999999999999999986532 12234677887754
No 376
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.10 E-value=0.22 Score=56.70 Aligned_cols=81 Identities=20% Similarity=0.235 Sum_probs=48.6
Q ss_pred CeeeechhHHHHHHHHHhcC--------CcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccC---CcE-EEEEeCC
Q 035550 117 AKVYGRETEKKEIVELLLRD--------DLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF---DLK-AWTCVSD 184 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f---~~~-~wv~~~~ 184 (1385)
..++|.++.++.+.-.+... +.+..-..+-|.++|++|+|||++|+.++.. ....| +.. +|-.-..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~--l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH--hCCeEEEeecceeecCCcc
Confidence 45789988888887666532 0001112357889999999999999999874 33333 222 2211112
Q ss_pred CCCHHHHHHHHHHHh
Q 035550 185 DFDVIRLTKSILLSI 199 (1385)
Q Consensus 185 ~~~~~~~~~~i~~~~ 199 (1385)
..+...+++.+.+..
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235666666665544
No 377
>PRK03839 putative kinase; Provisional
Probab=93.09 E-value=0.063 Score=55.41 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 035550 146 VIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999974
No 378
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.09 E-value=0.37 Score=55.92 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...+|+++|..|+||||++..++.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999987765
No 379
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.07 E-value=0.29 Score=53.43 Aligned_cols=129 Identities=18% Similarity=0.114 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEE---eCCCCCHHHHHHHHHHHhcC
Q 035550 125 EKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTC---VSDDFDVIRLTKSILLSIAS 201 (1385)
Q Consensus 125 ~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---~~~~~~~~~~~~~i~~~~~~ 201 (1385)
..+.++..+... .+..-++|+|..|.|||||.+.+.... ......+++. +....+..++...+ ..+..
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~---~~~~G~i~~~g~~v~~~d~~~ei~~~~-~~~~q 167 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARIL---STGISQLGLRGKKVGIVDERSEIAGCV-NGVPQ 167 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCcc---CCCCceEEECCEEeecchhHHHHHHHh-ccccc
Confidence 344445555432 235678999999999999999999732 2223333331 11111122222111 11111
Q ss_pred CCCCC----ccCHHHHHHHHHhHc-CCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchhHhh
Q 035550 202 DQIVD----NHDLNKLQEELKKKL-SPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQGVAA 268 (1385)
Q Consensus 202 ~~~~~----~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 268 (1385)
..... .....+ ...+...+ ...+=++++|.+- ..+.+..+...+ ..|..||+||-+..+..
T Consensus 168 ~~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~--~~e~~~~l~~~~---~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 168 HDVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIG--REEDVEALLEAL---HAGVSIIATAHGRDVED 233 (270)
T ss_pred ccccccccccccchH-HHHHHHHHHhCCCCEEEEeCCC--cHHHHHHHHHHH---hCCCEEEEEechhHHHH
Confidence 11000 011111 11122222 2467799999983 334455544444 24778999998766644
No 380
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.06 E-value=0.053 Score=30.68 Aligned_cols=15 Identities=40% Similarity=0.530 Sum_probs=5.3
Q ss_pred cccEEeccccccccc
Q 035550 554 YLRYLNLSLTEIRTL 568 (1385)
Q Consensus 554 ~L~~L~L~~~~i~~l 568 (1385)
+|++|+|++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 381
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.06 E-value=0.34 Score=52.87 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=23.3
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
.+..+|.|+|.+|+|||||+..+.+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999998873
No 382
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.06 E-value=0.33 Score=60.68 Aligned_cols=158 Identities=15% Similarity=0.167 Sum_probs=80.0
Q ss_pred CeeeechhHHHHHHHHHhcCCc------CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDL------RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIR 190 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 190 (1385)
.++.|.+...+++.+.+..... .+..-.+-|.++|++|.|||++|+.++.. ....| +.++.+.
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------ 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------ 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------
Confidence 3566777666666554422110 01111234889999999999999999873 22222 2222211
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCC----------ccccc----cccCcccC--CCCC
Q 035550 191 LTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNEN----------YNDWD----RLRPPFEA--GAPG 254 (1385)
Q Consensus 191 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~~~----~l~~~l~~--~~~g 254 (1385)
+.. ...+ .....+.+.+...-...+++|++|+++.-. ...++ .+...+.. ...+
T Consensus 221 ~~~----~~~g------~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~ 290 (644)
T PRK10733 221 FVE----MFVG------VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 290 (644)
T ss_pred hHH----hhhc------ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCC
Confidence 111 1100 111223333333334578899999983310 00111 11111111 1234
Q ss_pred cEEEEEccchhHhhhh--C---CCCcccCCCCChhhhHHHhhhhcc
Q 035550 255 SKIIVTARNQGVAAIM--G---TAPAYQLKKLSNDDCLSVFAQHSL 295 (1385)
Q Consensus 255 s~ilvTtR~~~v~~~~--~---~~~~~~l~~L~~~~~~~lf~~~a~ 295 (1385)
.-||.||...+..... . -+..+.++.-+.++-.+++..+..
T Consensus 291 vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 291 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred eeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 4566677766543322 1 135677887887777788877653
No 383
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.00 E-value=9 Score=43.99 Aligned_cols=72 Identities=7% Similarity=-0.055 Sum_probs=43.8
Q ss_pred EEE-EEccchhHhhhh--C--C-CCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHHhh
Q 035550 256 KII-VTARNQGVAAIM--G--T-APAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGG 329 (1385)
Q Consensus 256 ~il-vTtR~~~v~~~~--~--~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 329 (1385)
||| .||-..+-.+.. . . +..+.++-=+.+....|+.++..... ++ .+..+|.+.-.|.-+.-..+|.
T Consensus 339 RIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~---~h----~L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 339 RIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE---DH----RLFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred eEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC---Cc----chhHHHHHHhhcCccCHHHHHH
Confidence 554 577766543322 1 1 34678888889999999988863322 22 3455566666676666666666
Q ss_pred hhcCC
Q 035550 330 LLRGK 334 (1385)
Q Consensus 330 ~l~~~ 334 (1385)
.|-.+
T Consensus 412 ~lm~~ 416 (457)
T KOG0743|consen 412 ELMKN 416 (457)
T ss_pred HHhhc
Confidence 66444
No 384
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=92.98 E-value=0.24 Score=60.42 Aligned_cols=64 Identities=13% Similarity=0.116 Sum_probs=44.9
Q ss_pred CCeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCC
Q 035550 116 EAKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD 185 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 185 (1385)
...++|+...++++.+.+..... .-.-|.|+|..|+|||++|+.+++... ..-...+.|++..-
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~ 249 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAAL 249 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccC
Confidence 35689999999999888865422 234677999999999999999987321 11223455666553
No 385
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.97 E-value=0.077 Score=55.32 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
+.++|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999985
No 386
>PRK00625 shikimate kinase; Provisional
Probab=92.95 E-value=0.066 Score=54.20 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 035550 146 VIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
.|.++||+|+||||+|+.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999873
No 387
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.94 E-value=0.2 Score=51.30 Aligned_cols=120 Identities=17% Similarity=0.097 Sum_probs=58.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcC--CCC--CCc--------cC-H
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIAS--DQI--VDN--------HD-L 210 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~--~~~--~~~--------~~-~ 210 (1385)
-.+++|+|..|.|||||++.++... ......+++.-....+.. ..+...++. +.. ... -+ -
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 4589999999999999999998732 122334443211100000 011111110 000 000 01 1
Q ss_pred HHHHHHHHhHcCCCeEEEEEecCCCC-CccccccccCcccCC-CCCcEEEEEccchhHhhh
Q 035550 211 NKLQEELKKKLSPKKFLLVLDDVWNE-NYNDWDRLRPPFEAG-APGSKIIVTARNQGVAAI 269 (1385)
Q Consensus 211 ~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~~ 269 (1385)
+...-.+...+..++=++++|+.-.. +....+.+...+... ..|..||++|.+......
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 11122345555677789999997332 112222333333221 236778888888765553
No 388
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=92.93 E-value=0.33 Score=52.37 Aligned_cols=90 Identities=17% Similarity=0.223 Sum_probs=54.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccc--cccCCcEEEEEeCCCC-CHHHHHHHHHHHhcCCCC------CCccCHHH--
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQV--QDHFDLKAWTCVSDDF-DVIRLTKSILLSIASDQI------VDNHDLNK-- 212 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~------~~~~~~~~-- 212 (1385)
-+.++|.|-.|+|||+|+.++.+.... +.+-+.++++-+.+.. ...++.+++.+.-..+.. .+......
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 457899999999999999998875321 1234677888887764 455566655543211110 00111111
Q ss_pred ---HHHHHHhHc---CCCeEEEEEecC
Q 035550 213 ---LQEELKKKL---SPKKFLLVLDDV 233 (1385)
Q Consensus 213 ---~~~~l~~~l---~~~~~LlVlDdv 233 (1385)
..-.+-+++ +++++|+++||+
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 112334443 378999999999
No 389
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=92.87 E-value=0.24 Score=50.69 Aligned_cols=24 Identities=42% Similarity=0.548 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
..+++|+|..|.|||||++.++.-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 358999999999999999999863
No 390
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=92.85 E-value=2 Score=47.75 Aligned_cols=152 Identities=11% Similarity=0.084 Sum_probs=84.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCc---c-----ccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHH
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDK---Q-----VQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQE 215 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~---~-----~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 215 (1385)
..+..++|..|.||+++|+.+.+.. . ...+-+-..++.... .....+++.+
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g---------------------~~i~vd~Ir~ 76 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD---------------------KDLSKSEFLS 76 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC---------------------CcCCHHHHHH
Confidence 4677799999999999999887631 0 011111122221101 1112223322
Q ss_pred HHHhH-----cCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccc-hhHhhhh-CCCCcccCCCCChhhhHH
Q 035550 216 ELKKK-----LSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARN-QGVAAIM-GTAPAYQLKKLSNDDCLS 288 (1385)
Q Consensus 216 ~l~~~-----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~ 288 (1385)
.+... -.+.+=++|+||+..-+......+...+.....++.+|++|.+ ..+...+ .....+++.++++++..+
T Consensus 77 l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~ 156 (299)
T PRK07132 77 AINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILA 156 (299)
T ss_pred HHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHH
Confidence 22211 0146778889998544444455666666655566777765543 4444433 334689999999999987
Q ss_pred HhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHH
Q 035550 289 VFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKT 326 (1385)
Q Consensus 289 lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 326 (1385)
.+.... .+ ++.++.++...+|.=-|+..
T Consensus 157 ~l~~~~-------~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 157 KLLSKN-------KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HHHHcC-------CC---hhHHHHHHHHcCCHHHHHHH
Confidence 776541 11 13355566666763345544
No 391
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.80 E-value=0.064 Score=51.36 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=31.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCC
Q 035550 146 VIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASD 202 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~ 202 (1385)
+|.|.|++|.||||+|+.++++...+ | | +.-.+++++++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----e------eccHHHHHHHHHcCCC
Confidence 68999999999999999999853221 1 1 2224778888777653
No 392
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.80 E-value=0.23 Score=56.64 Aligned_cols=82 Identities=22% Similarity=0.311 Sum_probs=49.7
Q ss_pred CCeeeechhHHHHHHHHHhcC--------CcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccC---CcEEEEEe-C
Q 035550 116 EAKVYGRETEKKEIVELLLRD--------DLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF---DLKAWTCV-S 183 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~-~ 183 (1385)
...++|.++.++.+..++... ..+......-|.++|++|+|||++|+.+... ....| +...|... .
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~--l~~~fi~vD~t~f~e~Gy 91 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGY 91 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH--hCChheeecchhhccCCc
Confidence 345889999999998887541 0000111356889999999999999999873 22233 22212211 1
Q ss_pred CCCCHHHHHHHHHHHh
Q 035550 184 DDFDVIRLTKSILLSI 199 (1385)
Q Consensus 184 ~~~~~~~~~~~i~~~~ 199 (1385)
...+.....+.+.+..
T Consensus 92 vG~d~e~~ir~L~~~A 107 (443)
T PRK05201 92 VGRDVESIIRDLVEIA 107 (443)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 2235566666666554
No 393
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.77 E-value=0.56 Score=55.38 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
...|++++|+.|+||||++.+++..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHH
Confidence 3479999999999999999998863
No 394
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.70 E-value=0.3 Score=53.03 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 035550 146 VIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
+..|+|+||+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999998875
No 395
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.64 E-value=0.31 Score=46.90 Aligned_cols=100 Identities=21% Similarity=0.170 Sum_probs=50.9
Q ss_pred ccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccC-CCCCCccCcceEEeccccCcccccccCCCCCccceeec
Q 035550 1139 SLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFP-EGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTI 1217 (1385)
Q Consensus 1139 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~-~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L 1217 (1385)
+|+.+.+.. .....-...|.++++|+.+++.++ +..++ ..+..+++|+.+.+.+ .....-...|..+++|+.+++
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 566666653 233333556788888888888774 44444 3566677888888865 223333346777889998888
Q ss_pred cccCCCCCCcccCCCCCCcceeEecCC
Q 035550 1218 GIGGALPSLEEEDGLPTNLQSLNIWGN 1244 (1385)
Q Consensus 1218 ~~n~~~~~~~~~~~~~~~L~~L~L~~n 1244 (1385)
..+ +...-...+... +|+.+.+..+
T Consensus 89 ~~~-~~~i~~~~f~~~-~l~~i~~~~~ 113 (129)
T PF13306_consen 89 PSN-ITEIGSSSFSNC-NLKEINIPSN 113 (129)
T ss_dssp TTT--BEEHTTTTTT--T--EEE-TTB
T ss_pred Ccc-ccEEchhhhcCC-CceEEEECCC
Confidence 654 222222344555 7777777653
No 396
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.63 E-value=0.27 Score=49.81 Aligned_cols=119 Identities=18% Similarity=0.113 Sum_probs=62.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEe---CCCCCHHHHHHHHH--HH--hcCC-CCCC---ccC---
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCV---SDDFDVIRLTKSIL--LS--IASD-QIVD---NHD--- 209 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~~~~~~~~~~i~--~~--~~~~-~~~~---~~~--- 209 (1385)
...|-|+|-.|-||||.|..+.-. ...+=..+..+-. .........++.+- .- .+.. .... ..+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~r--a~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALR--AVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHH--HHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 357889999999999999877652 2222222332322 21234444444320 00 0110 0000 011
Q ss_pred HHHHHHHHHhHcCCCeE-EEEEecCCCC---CccccccccCcccCCCCCcEEEEEccch
Q 035550 210 LNKLQEELKKKLSPKKF-LLVLDDVWNE---NYNDWDRLRPPFEAGAPGSKIIVTARNQ 264 (1385)
Q Consensus 210 ~~~~~~~l~~~l~~~~~-LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 264 (1385)
.....+..++.+...+| ++|||.+-.. ..-..+++...+.....+..||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11233344555555554 9999998221 1233455566665556677999999986
No 397
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.60 E-value=0.48 Score=53.05 Aligned_cols=81 Identities=23% Similarity=0.240 Sum_probs=51.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCC----CCccCHHHHHHHHHh
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQI----VDNHDLNKLQEELKK 219 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~l~~ 219 (1385)
-.+|.|-|-+|||||||..++..+ ....- .+.+|+--+ +..++ +--+++++.... ....+.+.+.+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEE--SLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCc--CHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 468999999999999999999874 33333 577765444 33322 223444543221 123455555555554
Q ss_pred HcCCCeEEEEEecC
Q 035550 220 KLSPKKFLLVLDDV 233 (1385)
Q Consensus 220 ~l~~~~~LlVlDdv 233 (1385)
.++-++|+|-+
T Consensus 167 ---~~p~lvVIDSI 177 (456)
T COG1066 167 ---EKPDLVVIDSI 177 (456)
T ss_pred ---cCCCEEEEecc
Confidence 67889999998
No 398
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=92.56 E-value=0.28 Score=56.64 Aligned_cols=84 Identities=17% Similarity=0.212 Sum_probs=50.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCC-HHHHHHHHHHHhcCCCC-----CCccC-H------
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFD-VIRLTKSILLSIASDQI-----VDNHD-L------ 210 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~~~~~~~-----~~~~~-~------ 210 (1385)
...++|+|..|+|||||++.+.+.. ..+.++.+-+.+... +.++.+.++..-+.... ..... .
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 4579999999999999999998632 224556666666543 44455554433211110 00111 1
Q ss_pred ---HHHHHHHHhHcCCCeEEEEEecC
Q 035550 211 ---NKLQEELKKKLSPKKFLLVLDDV 233 (1385)
Q Consensus 211 ---~~~~~~l~~~l~~~~~LlVlDdv 233 (1385)
-.+.+.++. +++.+|+++||+
T Consensus 238 ~~A~tiAEyfrd--~G~~VLl~~Dsl 261 (444)
T PRK08972 238 ETATTIAEYFRD--QGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHH--cCCCEEEEEcCh
Confidence 112334443 589999999999
No 399
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.56 E-value=0.14 Score=54.64 Aligned_cols=62 Identities=24% Similarity=0.250 Sum_probs=40.2
Q ss_pred HHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHH
Q 035550 127 KEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLT 192 (1385)
Q Consensus 127 ~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 192 (1385)
.+++..+.... ++..+|+|.|.||+|||||.-++......+++=-.++-|+-|.+++--.++
T Consensus 38 ~~ll~~l~p~t----G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPRT----GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhcC----CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 34555554332 356799999999999999998887754333443455566666666543333
No 400
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=92.55 E-value=0.23 Score=57.90 Aligned_cols=51 Identities=31% Similarity=0.309 Sum_probs=35.4
Q ss_pred CCeeeechhHHHHHHHHHhcC----Cc------CCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 116 EAKVYGRETEKKEIVELLLRD----DL------RNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~~~----~~------~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
+..++|.++.++.+...+... .. ......+-|.++|++|+|||++|+.++.
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999886555211 00 0001235688999999999999999986
No 401
>PRK04040 adenylate kinase; Provisional
Probab=92.54 E-value=0.087 Score=54.31 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+|+|+|++|+||||+++.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 402
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=92.54 E-value=2.6 Score=43.44 Aligned_cols=156 Identities=16% Similarity=0.184 Sum_probs=82.5
Q ss_pred eeeec-hhHHHHHHHHHhcCCc-------CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHH
Q 035550 118 KVYGR-ETEKKEIVELLLRDDL-------RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVI 189 (1385)
Q Consensus 118 ~~vGr-~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 189 (1385)
++||+ ++.+++|.+.+.-+.. -+-.+.+-|.++|++|.|||-||++|+++. ...|+.+|..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-------~c~firvsgs---- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGS---- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechH----
Confidence 35554 7777777766532211 133456678899999999999999999842 2345666552
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCcc--------c------cccccCcccC--CCC
Q 035550 190 RLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYN--------D------WDRLRPPFEA--GAP 253 (1385)
Q Consensus 190 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~--------~------~~~l~~~l~~--~~~ 253 (1385)
++.+..+ ++. ..-..++.-.-+ ..-+-.|.+|.+..-... + .-.+...+.. ..+
T Consensus 216 elvqk~i----geg---srmvrelfvmar---ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk 285 (404)
T KOG0728|consen 216 ELVQKYI----GEG---SRMVRELFVMAR---EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK 285 (404)
T ss_pred HHHHHHh----hhh---HHHHHHHHHHHH---hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc
Confidence 1222211 110 001111111111 234667777777321000 0 0011222222 135
Q ss_pred CcEEEEEccchhHhhhh-----CCCCcccCCCCChhhhHHHhhhhc
Q 035550 254 GSKIIVTARNQGVAAIM-----GTAPAYQLKKLSNDDCLSVFAQHS 294 (1385)
Q Consensus 254 gs~ilvTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a 294 (1385)
.-+||++|..-++.... ..+..++.++-+++.-.++++-+.
T Consensus 286 nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 286 NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 56888888765554432 124568888877777777776654
No 403
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.52 E-value=0.0072 Score=60.82 Aligned_cols=86 Identities=19% Similarity=0.180 Sum_probs=77.4
Q ss_pred ccccc-ccccCCccccEEecccccccccchhhhccCCccEEecCCCcchhhhhhcccccCCCCeeecCCCCCcccccCCC
Q 035550 542 ISELP-DSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLDNLDTGSLEEMPLGI 620 (1385)
Q Consensus 542 i~~lp-~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i 620 (1385)
++++| ..|.....-+.||++.|++..+-..++.++.|..||++.| .+..+|.+++.+..++++++..| .....|..+
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhcc-chhhCCccc
Confidence 44566 5677889999999999999999999999999999999985 78999999999999999999888 789999999
Q ss_pred Ccccccccc
Q 035550 621 GKLTCLQTL 629 (1385)
Q Consensus 621 ~~L~~L~~L 629 (1385)
++++.++.+
T Consensus 108 ~k~~~~k~~ 116 (326)
T KOG0473|consen 108 KKEPHPKKN 116 (326)
T ss_pred cccCCcchh
Confidence 999998887
No 404
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=92.49 E-value=0.11 Score=50.63 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
+..||++.|.+|.||||+|.+++.
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~ 45 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEE 45 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 405
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.43 E-value=0.22 Score=54.86 Aligned_cols=42 Identities=21% Similarity=0.169 Sum_probs=35.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCC
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD 185 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 185 (1385)
+..+++.|+|.+|+|||++|.++.. +.......++||+..+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 4678999999999999999999987 44555888999988774
No 406
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.36 E-value=0.27 Score=54.11 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+-|..+|++|.|||-||++|+.
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvAT 267 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVAT 267 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHH
Confidence 456788999999999999999997
No 407
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.30 E-value=0.46 Score=51.77 Aligned_cols=89 Identities=15% Similarity=0.164 Sum_probs=46.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF-DVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLS 222 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 222 (1385)
..+++++|.+|+||||+++.+... ....=..+.++...... ....-++...+.++.... ...+...+.+.+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI-AVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEE-ecCCHHHHHHHHHHHHh
Confidence 469999999999999999988753 22111235555543221 111122223333332211 22344555544443212
Q ss_pred -CCeEEEEEecCCC
Q 035550 223 -PKKFLLVLDDVWN 235 (1385)
Q Consensus 223 -~~~~LlVlDdv~~ 235 (1385)
.+.=++++|..-.
T Consensus 152 ~~~~D~ViIDt~Gr 165 (270)
T PRK06731 152 EARVDYILIDTAGK 165 (270)
T ss_pred cCCCCEEEEECCCC
Confidence 2345788898733
No 408
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.22 E-value=0.18 Score=51.72 Aligned_cols=42 Identities=29% Similarity=0.374 Sum_probs=27.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCH
Q 035550 146 VIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDV 188 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 188 (1385)
.|+|+|-||+||||+|..+.....-++.| .+.-|+...++++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~-~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGY-NVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCc-eEEEEeCCCCCCh
Confidence 58999999999999998855422112213 3555666655554
No 409
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.22 E-value=0.5 Score=49.32 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=21.9
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
.....|.++||+|.||||..+.++.+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHH
Confidence 34567888999999999999999874
No 410
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.21 E-value=0.43 Score=51.53 Aligned_cols=41 Identities=15% Similarity=0.077 Sum_probs=30.0
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCC
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD 184 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 184 (1385)
+...++.|.|.+|+||||+|.++... ....-..++|++...
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVTTEE 58 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 34579999999999999999987652 112335678887644
No 411
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.20 E-value=0.095 Score=29.65 Aligned_cols=17 Identities=29% Similarity=0.557 Sum_probs=11.6
Q ss_pred CceeEEEEcCccccccc
Q 035550 530 QRLRVFSLRGYYISELP 546 (1385)
Q Consensus 530 ~~Lr~L~L~~~~i~~lp 546 (1385)
++|++|++++|.++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999999887
No 412
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=92.19 E-value=0.33 Score=60.45 Aligned_cols=85 Identities=20% Similarity=0.110 Sum_probs=55.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCC----CCccCHHHHHHHH
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQI----VDNHDLNKLQEEL 217 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~l 217 (1385)
+..+++-|+|.+|+||||||.+++.. ....-..++|+...+.++.. .+++++.... ......+.....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 45689999999999999999886652 22334567899887776642 5555554321 1223344455555
Q ss_pred HhHcC-CCeEEEEEecC
Q 035550 218 KKKLS-PKKFLLVLDDV 233 (1385)
Q Consensus 218 ~~~l~-~~~~LlVlDdv 233 (1385)
.+.++ ++--+||+|-+
T Consensus 131 ~~lv~~~~~~LVVIDSI 147 (790)
T PRK09519 131 DMLIRSGALDIVVIDSV 147 (790)
T ss_pred HHHhhcCCCeEEEEcch
Confidence 55554 45668999998
No 413
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.15 E-value=0.32 Score=55.70 Aligned_cols=66 Identities=21% Similarity=0.125 Sum_probs=48.4
Q ss_pred eeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 118 KVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 118 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.++|+++.+..+...+... +-+.+.|.+|+|||+||+.++.. .. ...+++.+.......++.....
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~--l~---~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARA--LG---LPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHH--hC---CCeEEEecCCCCCHHHhcCchh
Confidence 3789988888888877654 35779999999999999999973 22 3345677777766665554443
No 414
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.14 E-value=0.1 Score=53.67 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
...|.|+|++|+||||+|++++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 415
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.10 E-value=0.72 Score=48.23 Aligned_cols=59 Identities=10% Similarity=0.146 Sum_probs=36.1
Q ss_pred HHHHHHHhHcCCCeEEEEEecCCCC-CccccccccCcccCC--CCCcEEEEEccchhHhhhh
Q 035550 212 KLQEELKKKLSPKKFLLVLDDVWNE-NYNDWDRLRPPFEAG--APGSKIIVTARNQGVAAIM 270 (1385)
Q Consensus 212 ~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~~ 270 (1385)
+-.-.+.+.|-..+-+|+-|+=-.. +.+.-+.+...+... ..|..||+.|-+..+|..+
T Consensus 148 qQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 148 QQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC
Confidence 3344566677778889999974211 112222333333322 3577899999999999865
No 416
>PRK00889 adenylylsulfate kinase; Provisional
Probab=92.09 E-value=0.13 Score=52.67 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
..+|+|+|++|+||||+|+.++..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999873
No 417
>PRK08149 ATP synthase SpaL; Validated
Probab=92.08 E-value=0.39 Score=55.69 Aligned_cols=86 Identities=15% Similarity=0.264 Sum_probs=48.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCC-CCHHHHHHHHHHHhcCCCC-----CCccC-H-----H
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD-FDVIRLTKSILLSIASDQI-----VDNHD-L-----N 211 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~-----~~~~~-~-----~ 211 (1385)
...++|+|..|+|||||++.++.... -+.++...+... .+..++..+.......... ..... . .
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 46899999999999999999987422 233333334333 3455566666553222110 00111 1 1
Q ss_pred HHHHHHHhHc--CCCeEEEEEecC
Q 035550 212 KLQEELKKKL--SPKKFLLVLDDV 233 (1385)
Q Consensus 212 ~~~~~l~~~l--~~~~~LlVlDdv 233 (1385)
.....+-+++ ++|++|+++||+
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccch
Confidence 1112233333 589999999999
No 418
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.06 E-value=0.088 Score=55.32 Aligned_cols=21 Identities=43% Similarity=0.602 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 035550 146 VIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
+|+|.|..|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 419
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=92.06 E-value=0.088 Score=54.56 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 035550 146 VIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
||.|+|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 420
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.04 E-value=0.15 Score=51.07 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4579999999999999999999873
No 421
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=92.02 E-value=0.5 Score=52.81 Aligned_cols=84 Identities=18% Similarity=0.269 Sum_probs=47.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCC-CCCHHHHHHHHHHHhcCCCC-----CCccC-H------
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD-DFDVIRLTKSILLSIASDQI-----VDNHD-L------ 210 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~~~~~~~-----~~~~~-~------ 210 (1385)
...++|+|..|.|||||++.+..... -+..+..-+.. ..+..++.......-..... ..... .
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999999999987422 12333344433 33455555555443221110 00111 1
Q ss_pred ---HHHHHHHHhHcCCCeEEEEEecC
Q 035550 211 ---NKLQEELKKKLSPKKFLLVLDDV 233 (1385)
Q Consensus 211 ---~~~~~~l~~~l~~~~~LlVlDdv 233 (1385)
-...+.++. ++|.+|+++||+
T Consensus 145 ~~a~~~AEyfr~--~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRD--QGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHH--cCCCeEEEeccc
Confidence 112333333 589999999998
No 422
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=91.99 E-value=0.34 Score=51.79 Aligned_cols=78 Identities=14% Similarity=0.122 Sum_probs=42.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCC--CCCHHHHHHHHHHHhc----CCC-CCCccCHHHHHHHHH
Q 035550 146 VIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD--DFDVIRLTKSILLSIA----SDQ-IVDNHDLNKLQEELK 218 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~~~----~~~-~~~~~~~~~~~~~l~ 218 (1385)
+|+|.|..|+||||+|+.+... ....-..+..++... ..+....-+.+..... -.. .++.-+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~--l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHI--FAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--HHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 5899999999999999988862 221111233333222 1222222222222221 111 135667788888888
Q ss_pred hHcCCCe
Q 035550 219 KKLSPKK 225 (1385)
Q Consensus 219 ~~l~~~~ 225 (1385)
...+++.
T Consensus 79 ~L~~g~~ 85 (277)
T cd02029 79 TYGETGR 85 (277)
T ss_pred HHHcCCC
Confidence 7776543
No 423
>PRK05922 type III secretion system ATPase; Validated
Probab=91.96 E-value=0.36 Score=56.01 Aligned_cols=86 Identities=10% Similarity=0.204 Sum_probs=46.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCC-CCHHHHHHHHHHHhcCCCCC-----CccC-HH-----
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD-FDVIRLTKSILLSIASDQIV-----DNHD-LN----- 211 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~~-----~~~~-~~----- 211 (1385)
...++|+|..|+|||||.+.+.+... .+..+.+-+.+. ....+.+.+........... .... ..
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 35689999999999999999987421 233333334333 23344444443332221110 0010 11
Q ss_pred HHHHHHHhHc--CCCeEEEEEecC
Q 035550 212 KLQEELKKKL--SPKKFLLVLDDV 233 (1385)
Q Consensus 212 ~~~~~l~~~l--~~~~~LlVlDdv 233 (1385)
...-.+-+++ +++++|+++||+
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1112233333 489999999999
No 424
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=91.95 E-value=0.099 Score=52.06 Aligned_cols=22 Identities=27% Similarity=0.616 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 035550 146 VIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3679999999999999999873
No 425
>PTZ00185 ATPase alpha subunit; Provisional
Probab=91.93 E-value=0.55 Score=54.72 Aligned_cols=88 Identities=16% Similarity=0.182 Sum_probs=51.0
Q ss_pred cEEEEEEcCCCChHHHHH-HHHhcCccc-----cccCCcEEEEEeCCCCCHHHHHHHHHHHhcC-CCC-----CCccC--
Q 035550 144 FSVIPIIGMGGLGKTTLA-QLVYNDKQV-----QDHFDLKAWTCVSDDFDVIRLTKSILLSIAS-DQI-----VDNHD-- 209 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa-~~v~~~~~~-----~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~-~~~-----~~~~~-- 209 (1385)
...++|.|..|+|||+|| ..+.+...+ .+.-+.++++-+.+......-+.+.+++-+. +.. .....
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 456899999999999997 556664322 1234567888888875433333444433331 100 00111
Q ss_pred --------HHHHHHHHHhHcCCCeEEEEEecC
Q 035550 210 --------LNKLQEELKKKLSPKKFLLVLDDV 233 (1385)
Q Consensus 210 --------~~~~~~~l~~~l~~~~~LlVlDdv 233 (1385)
.-.+.+.++. +++.+|+|+||+
T Consensus 269 ~r~~Apy~a~tiAEYFrd--~GkdVLiv~DDL 298 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMN--RGRHCLCVYDDL 298 (574)
T ss_pred HHHHHHHHHHHHHHHHHH--cCCCEEEEEcCc
Confidence 1123334443 589999999999
No 426
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=91.92 E-value=0.22 Score=55.52 Aligned_cols=48 Identities=17% Similarity=0.183 Sum_probs=31.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHH
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTK 193 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 193 (1385)
.+++.+.|.||+||||+|.+.+-. .......+.-|+.....++.+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~--lA~~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVK--LAESGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHH--HHHcCCcEEEEEeCCCCchHhhhc
Confidence 478999999999999999886542 222334466666655555444433
No 427
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=91.84 E-value=0.12 Score=53.09 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
++|.+.|++|+||||+|+++...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999863
No 428
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.81 E-value=0.13 Score=53.16 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
.++.|+|+.|+||||+|+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998763
No 429
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.79 E-value=0.24 Score=49.70 Aligned_cols=117 Identities=17% Similarity=0.159 Sum_probs=59.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCC--CHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF--DVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLS 222 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 222 (1385)
.+++|+|..|.|||||++.+.... ......+++...... ..... ...+..-. ....-+...-.+...+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~--qlS~G~~~r~~l~~~l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEEL----RRRIGYVP--QLSGGQRQRVALARALL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHH----HhceEEEe--eCCHHHHHHHHHHHHHh
Confidence 689999999999999999998732 223444444321111 11111 11111100 01111222223444555
Q ss_pred CCeEEEEEecCCCC-CccccccccCcccCC-CCCcEEEEEccchhHhhhh
Q 035550 223 PKKFLLVLDDVWNE-NYNDWDRLRPPFEAG-APGSKIIVTARNQGVAAIM 270 (1385)
Q Consensus 223 ~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~~~ 270 (1385)
..+=++++|+.-.. +......+...+... ..+..++++|.+.+.....
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 56778999997322 112222333323211 1246788888877665543
No 430
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.76 E-value=0.64 Score=49.87 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=31.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSI 195 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 195 (1385)
...++.|.|.+|+||||+|.+++... .+.. ..+++++.. .+..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e--~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQ--LTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCC--CCHHHHHHHH
Confidence 34699999999999999987665432 1222 345666633 3445555555
No 431
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=91.75 E-value=0.13 Score=50.20 Aligned_cols=20 Identities=45% Similarity=0.748 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q 035550 146 VIPIIGMGGLGKTTLAQLVY 165 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~ 165 (1385)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999999887
No 432
>PRK04328 hypothetical protein; Provisional
Probab=91.72 E-value=0.39 Score=52.29 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=31.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCC
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD 185 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 185 (1385)
+..+++.|.|.+|+|||+||.++... ....-..++|++..+.
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEEH 62 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeCC
Confidence 34679999999999999999987653 2223456788877653
No 433
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=91.71 E-value=1.7 Score=46.84 Aligned_cols=96 Identities=21% Similarity=0.245 Sum_probs=65.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPK 224 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 224 (1385)
+.+.++|+.|+|||+-++.+++.. ...+-+..+..+....++..+......... ....+....+...++++
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s~------p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~---~~~~d~~~~~~~~l~~~ 165 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPSN------PNALLIEADPSYTALVLILIICAAAFGATD---GTINDLTERLMIRLRDT 165 (297)
T ss_pred ceEEEeccccchhHHHHHhhcccC------ccceeecCChhhHHHHHHHHHHHHHhcccc---hhHHHHHHHHHHHHccC
Confidence 488899999999999999999731 223334556666666666666665554432 34455666666777888
Q ss_pred eEEEEEecCCCCCccccccccCccc
Q 035550 225 KFLLVLDDVWNENYNDWDRLRPPFE 249 (1385)
Q Consensus 225 ~~LlVlDdv~~~~~~~~~~l~~~l~ 249 (1385)
.-+++.|+...-....++.+.....
T Consensus 166 ~~~iivDEA~~L~~~ale~lr~i~d 190 (297)
T COG2842 166 VRLIIVDEADRLPYRALEELRRIHD 190 (297)
T ss_pred cceeeeehhhccChHHHHHHHHHHH
Confidence 8899999985555556666555443
No 434
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=91.69 E-value=0.13 Score=65.09 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=55.0
Q ss_pred CCeEEEEEecCCCCC-ccccccc----cCcccCCCCCcEEEEEccchhHhhhhCCCCcccCCCCChhhhHHHhhhhccCc
Q 035550 223 PKKFLLVLDDVWNEN-YNDWDRL----RPPFEAGAPGSKIIVTARNQGVAAIMGTAPAYQLKKLSNDDCLSVFAQHSLGT 297 (1385)
Q Consensus 223 ~~~~LlVlDdv~~~~-~~~~~~l----~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~ 297 (1385)
..+-|+++|..-... +.+...+ ...+. ..|+.+|+||-..++.........+....+..++----+..+.. .
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~p~Ykl~-~ 477 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLSPTYKLL-K 477 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCceEEEEC-C
Confidence 578899999985432 2222222 22222 35789999999987755432221111111111110000111111 1
Q ss_pred CCCCCchhHHHHHHHHHHhcCCCchHHHHHhhhhcCCCCHHHHHHHHh
Q 035550 298 RDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKDDRREWEDVLS 345 (1385)
Q Consensus 298 ~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~ 345 (1385)
+. +. ..-|-.|++++ |+|-.|.--|..+... ...++..+++
T Consensus 478 G~--~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~ 518 (771)
T TIGR01069 478 GI--PG---ESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLIE 518 (771)
T ss_pred CC--CC---CcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 11 11 23455677766 7888888777777544 2334444443
No 435
>PRK06217 hypothetical protein; Validated
Probab=91.68 E-value=0.11 Score=53.59 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 035550 146 VIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
.|.|.|.+|+||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
No 436
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=91.63 E-value=0.34 Score=59.12 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=35.0
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..++|....+.++++.+..... .-.-|.|+|..|+||+++|+.+..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHH
Confidence 4689999888888877653221 123477999999999999999865
No 437
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=91.57 E-value=0.17 Score=48.81 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+|.|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 57999999999999999987766
No 438
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=91.54 E-value=0.47 Score=55.14 Aligned_cols=86 Identities=16% Similarity=0.190 Sum_probs=49.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCC-CHHHHHHHHHHHhcCCCC-----CCccC-HH-----
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF-DVIRLTKSILLSIASDQI-----VDNHD-LN----- 211 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~-----~~~~~-~~----- 211 (1385)
...++|+|..|+|||||++++++... .+.++.+-+.+.. .+.++.++.+..-+.... ..... ..
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 45789999999999999999997422 2345556666554 344554444433221110 01111 11
Q ss_pred HHHHHHHhHc--CCCeEEEEEecC
Q 035550 212 KLQEELKKKL--SPKKFLLVLDDV 233 (1385)
Q Consensus 212 ~~~~~l~~~l--~~~~~LlVlDdv 233 (1385)
...-.+-+++ +++.+|+++||+
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1111233333 589999999999
No 439
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=91.54 E-value=0.53 Score=56.45 Aligned_cols=56 Identities=29% Similarity=0.293 Sum_probs=37.6
Q ss_pred cCCeeeechhHHHHHHH---HHhcCCc---CCCCCcEEEEEEcCCCChHHHHHHHHhcCccc
Q 035550 115 NEAKVYGRETEKKEIVE---LLLRDDL---RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQV 170 (1385)
Q Consensus 115 ~~~~~vGr~~~~~~l~~---~L~~~~~---~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~ 170 (1385)
.-.++-|.|+.++++.+ .|.++.. -+..-.+-|.++|++|.|||.||++++....+
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V 209 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV 209 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC
Confidence 34567788766655554 5543321 02233556889999999999999999986444
No 440
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.54 E-value=0.15 Score=53.30 Aligned_cols=120 Identities=14% Similarity=0.153 Sum_probs=59.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHH---HHHHHhH
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKL---QEELKKK 220 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~l~~~ 220 (1385)
.+++.|.|+.|.||||+.+.+.--. +-.+ ...+|.+.. ....+...+...+...+. ........ ...+...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~--~G~~vpa~~--~~l~~~d~I~~~~~~~d~-~~~~~S~fs~e~~~~~~i 102 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQ--IGCFVPAEY--ATLPIFNRLLSRLSNDDS-MERNLSTFASEMSETAYI 102 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHH--cCCCcchhh--cCccChhheeEecCCccc-cchhhhHHHHHHHHHHHH
Confidence 4789999999999999998886421 1011 111121111 111222333333332211 00111100 1111222
Q ss_pred --cCCCeEEEEEecCCCCC-ccc----cccccCcccCCCCCcEEEEEccchhHhhhhC
Q 035550 221 --LSPKKFLLVLDDVWNEN-YND----WDRLRPPFEAGAPGSKIIVTARNQGVAAIMG 271 (1385)
Q Consensus 221 --l~~~~~LlVlDdv~~~~-~~~----~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~ 271 (1385)
+..++-|+++|...... ..+ ...+...+.. .|..+|++|-+.+++..+.
T Consensus 103 l~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 103 LDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 23567899999974322 111 1122222322 3789999999998887654
No 441
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=91.50 E-value=0.38 Score=56.33 Aligned_cols=90 Identities=18% Similarity=0.139 Sum_probs=54.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCC-CHHHHHHHHHHHhcCCCC-----CCccC-H-----
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF-DVIRLTKSILLSIASDQI-----VDNHD-L----- 210 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~-----~~~~~-~----- 210 (1385)
+-..++|.|.+|+|||||+.++.+.... .+-+.++++-+.+.. .+.++..++...-..... ..... .
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 3467999999999999999988874322 245777777776653 455555555543211110 00111 1
Q ss_pred HHHHHHHHhHc---CCCeEEEEEecC
Q 035550 211 NKLQEELKKKL---SPKKFLLVLDDV 233 (1385)
Q Consensus 211 ~~~~~~l~~~l---~~~~~LlVlDdv 233 (1385)
....-.+-+++ +++.+|+++||+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc
Confidence 11222344444 389999999999
No 442
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.46 E-value=0.14 Score=52.84 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
++|+|+|+.|+||||||+.++.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999997
No 443
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=91.44 E-value=0.27 Score=60.40 Aligned_cols=75 Identities=15% Similarity=0.083 Sum_probs=54.2
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.+++|.++.++.+...+... +.+.++|.+|+||||+|+.+.+.. ...+++..+|..- ...+...+++.+.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHHH
Confidence 45889999999888877432 368899999999999999998742 2234577788665 3346667777777
Q ss_pred HHhcC
Q 035550 197 LSIAS 201 (1385)
Q Consensus 197 ~~~~~ 201 (1385)
.+.+.
T Consensus 101 ~~~G~ 105 (637)
T PRK13765 101 AGKGK 105 (637)
T ss_pred HhcCH
Confidence 65543
No 444
>PRK13949 shikimate kinase; Provisional
Probab=91.42 E-value=0.13 Score=52.12 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 035550 146 VIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
-|.|+|++|+||||+|+.+++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999873
No 445
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=91.40 E-value=0.17 Score=49.13 Aligned_cols=39 Identities=21% Similarity=0.339 Sum_probs=26.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD 184 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 184 (1385)
++|.|+|..|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 489999999999999999999842 224455555665554
No 446
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=91.37 E-value=0.65 Score=43.39 Aligned_cols=21 Identities=52% Similarity=0.774 Sum_probs=18.9
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 035550 147 IPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 147 v~i~G~gGiGKTtLa~~v~~~ 167 (1385)
|.+.|.||+||||++..++..
T Consensus 2 i~~~GkgG~GKTt~a~~la~~ 22 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARY 22 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998873
No 447
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=91.37 E-value=0.12 Score=51.28 Aligned_cols=21 Identities=43% Similarity=0.646 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 035550 146 VIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
+|.|+|.+|+||||+|+++..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 448
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=91.34 E-value=0.14 Score=49.68 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 035550 146 VIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
.|+|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999873
No 449
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.33 E-value=2.5 Score=51.17 Aligned_cols=184 Identities=17% Similarity=0.124 Sum_probs=0.0
Q ss_pred CcccCccCCeeeechhHHHHHHHHHhcCCc------CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEe
Q 035550 109 PTTSLVNEAKVYGRETEKKEIVELLLRDDL------RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCV 182 (1385)
Q Consensus 109 ~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 182 (1385)
|..+.+.=.++=|-++.+.+|.+-+.-+-. .+-.+.+=|.++|++|.|||-+|++|+. +..-.| ++|
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVAT--EcsL~F-----lSV 736 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVAT--ECSLNF-----LSV 736 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHh--hceeeE-----Eee
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCc-----------------ccccccc
Q 035550 183 SDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENY-----------------NDWDRLR 245 (1385)
Q Consensus 183 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-----------------~~~~~l~ 245 (1385)
-.+ +++..-.++.. +.+.+.+.+.=..++|+|.+|.+..-.+ .-+.++-
T Consensus 737 KGP--------ELLNMYVGqSE------~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELD 802 (953)
T KOG0736|consen 737 KGP--------ELLNMYVGQSE------ENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELD 802 (953)
T ss_pred cCH--------HHHHHHhcchH------HHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhh
Q ss_pred CcccCCCCCcEEEEEccchhHhhhh-----CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhc
Q 035550 246 PPFEAGAPGSKIIVTARNQGVAAIM-----GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKC 317 (1385)
Q Consensus 246 ~~l~~~~~gs~ilvTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~ 317 (1385)
..-.....+--||=+|-.++..+.. .-++-+.|++=+.+++..-.-+..-+.-..+..-++.+ |+++|
T Consensus 803 gls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~e----iAk~c 875 (953)
T KOG0736|consen 803 GLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVE----IAKKC 875 (953)
T ss_pred cccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHH----HHhhC
No 450
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=91.32 E-value=0.27 Score=48.43 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 123 ETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 123 ~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
.+.++++.+++.. +++.++|..|+|||||+..+..+
T Consensus 23 ~~g~~~l~~~l~~---------k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 23 GEGIEELKELLKG---------KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTTHHHHHHHHTT---------SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CcCHHHHHHHhcC---------CEEEEECCCCCCHHHHHHHHHhh
Confidence 3566777788732 68999999999999999999875
No 451
>PRK03846 adenylylsulfate kinase; Provisional
Probab=91.32 E-value=0.17 Score=53.10 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...+|+|+|++|+||||+|+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 452
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=91.32 E-value=0.37 Score=56.17 Aligned_cols=90 Identities=20% Similarity=0.189 Sum_probs=52.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCC-CHHHHHHHHHHHhcCCCC-----CCccC-HH----
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF-DVIRLTKSILLSIASDQI-----VDNHD-LN---- 211 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~-----~~~~~-~~---- 211 (1385)
.-+.++|.|..|+|||||+.++....... +=+.++++-+.+.. .+.++.+++...-..+.. ..... ..
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 34678999999999999999886532211 11356677776654 455666666543211110 01111 11
Q ss_pred -HHHHHHHhHc---CCCeEEEEEecC
Q 035550 212 -KLQEELKKKL---SPKKFLLVLDDV 233 (1385)
Q Consensus 212 -~~~~~l~~~l---~~~~~LlVlDdv 233 (1385)
...-.+-+++ +++.+|+++||+
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 1122344444 689999999999
No 453
>PRK13947 shikimate kinase; Provisional
Probab=91.32 E-value=0.13 Score=52.65 Aligned_cols=21 Identities=43% Similarity=0.555 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 035550 146 VIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 454
>PLN02796 D-glycerate 3-kinase
Probab=91.29 E-value=0.85 Score=51.01 Aligned_cols=25 Identities=36% Similarity=0.191 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
..-+|+|.|..|.||||||+.+...
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~l 123 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYL 123 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4578999999999999999999873
No 455
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=91.29 E-value=0.7 Score=53.74 Aligned_cols=88 Identities=17% Similarity=0.143 Sum_probs=48.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CCccC------HH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQI-----VDNHD------LN 211 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~------~~ 211 (1385)
....++|+|..|+|||||++.++..... ...++...-.+.....+..+..+..-+.... ..... ..
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 3467899999999999999999874321 1223332222235566666655544221110 01111 11
Q ss_pred HHHHHHHhHc--CCCeEEEEEecC
Q 035550 212 KLQEELKKKL--SPKKFLLVLDDV 233 (1385)
Q Consensus 212 ~~~~~l~~~l--~~~~~LlVlDdv 233 (1385)
.....+.+++ ++++.|+|+||+
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDsl 255 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSV 255 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecch
Confidence 1122233333 489999999998
No 456
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=91.28 E-value=0.4 Score=55.69 Aligned_cols=86 Identities=17% Similarity=0.204 Sum_probs=46.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCC-CCCHHHHHHHHHHHhcCCCC-----CCcc-CHHH----
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD-DFDVIRLTKSILLSIASDQI-----VDNH-DLNK---- 212 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~~~~~~~-----~~~~-~~~~---- 212 (1385)
...++|+|..|+|||||++.+....+ ....++ +.+.+ ...+.++.+..+..-+.+.. .... ....
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi-~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVI-ALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC---CCEEEE-EEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 45799999999999999999987422 122222 22333 33444555544433221110 0011 1111
Q ss_pred -HHHHHHhHc--CCCeEEEEEecC
Q 035550 213 -LQEELKKKL--SPKKFLLVLDDV 233 (1385)
Q Consensus 213 -~~~~l~~~l--~~~~~LlVlDdv 233 (1385)
..-.+-+++ +++.+|+++||+
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 111233333 589999999999
No 457
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=91.27 E-value=0.27 Score=50.43 Aligned_cols=42 Identities=26% Similarity=0.315 Sum_probs=31.3
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+++|-+..+..+.-.... ..-+.++|.+|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 3578888888888766643 24688999999999999999864
No 458
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=91.25 E-value=0.18 Score=52.17 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=28.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEe
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCV 182 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 182 (1385)
.++|.|+|+.|+|||||++.+.. .....|..+++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeecc
Confidence 36899999999999999999987 44556654444443
No 459
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.24 E-value=0.88 Score=49.64 Aligned_cols=53 Identities=17% Similarity=0.103 Sum_probs=35.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLS 198 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 198 (1385)
...++.|.|.+|+|||++|.+++.+... .+=..++|++... +..++.+.++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~-~~g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAK-KQGKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCceEEEeCCC--CHHHHHHHHHHH
Confidence 3468999999999999999998764222 2123567776544 456666666543
No 460
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.23 E-value=0.07 Score=53.24 Aligned_cols=89 Identities=18% Similarity=0.329 Sum_probs=49.8
Q ss_pred CCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCCCCcccceeeccccccccccc-c
Q 035550 1234 TNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLPASLTSLWIFNFPNLERLS-S 1312 (1385)
Q Consensus 1234 ~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~-~ 1312 (1385)
..++.+|-++..+-.... ..+..++.++.|.+..|.. + .|-.+...-+..++|+.|++++|++|++-. .
T Consensus 101 ~~IeaVDAsds~I~~eGl----e~L~~l~~i~~l~l~~ck~-~-----dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~ 170 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGL----EHLRDLRSIKSLSLANCKY-F-----DDWCLERLGGLAPSLQDLDLSGCPRITDGGLA 170 (221)
T ss_pred ceEEEEecCCchHHHHHH----HHHhccchhhhheeccccc-h-----hhHHHHHhcccccchheeeccCCCeechhHHH
Confidence 345556665554322222 3456667777777777631 1 112222233355677777777777776632 2
Q ss_pred cCCCCCCCCeEeccCCCCCC
Q 035550 1313 SIVDLQNLTELKLHNCPKLK 1332 (1385)
Q Consensus 1313 ~~~~l~~L~~L~l~~c~~l~ 1332 (1385)
++..+++|+.|.|.+.+.+.
T Consensus 171 ~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 171 CLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HHHHhhhhHHHHhcCchhhh
Confidence 56667777777777755443
No 461
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.22 E-value=0.24 Score=51.39 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+++|+|..|.||||||+.++-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 45899999999999999999985
No 462
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=91.21 E-value=0.3 Score=51.06 Aligned_cols=41 Identities=27% Similarity=0.282 Sum_probs=26.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccC--------CcEEEEEeCCC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHF--------DLKAWTCVSDD 185 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~ 185 (1385)
.++.|+|.+|+||||++.++.........| ..++|+.....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 488899999999999998887643222222 35777776554
No 463
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.18 E-value=0.2 Score=45.37 Aligned_cols=22 Identities=36% Similarity=0.385 Sum_probs=19.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHh
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVY 165 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~ 165 (1385)
-..++|+|+.|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999876
No 464
>COG4639 Predicted kinase [General function prediction only]
Probab=91.17 E-value=0.17 Score=48.22 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=19.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+|++.|.+|.||+|.|++-+.
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~~ 24 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENFL 24 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhCC
Confidence 36889999999999999998544
No 465
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.14 E-value=0.95 Score=50.96 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
...+++++|++|+||||++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5689999999999999999998863
No 466
>PRK06936 type III secretion system ATPase; Provisional
Probab=91.03 E-value=0.56 Score=54.42 Aligned_cols=85 Identities=20% Similarity=0.276 Sum_probs=50.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCC-CHHHHHHHHHHHhcCCCC-----CCccC-H-----
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF-DVIRLTKSILLSIASDQI-----VDNHD-L----- 210 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~-----~~~~~-~----- 210 (1385)
+...++|.|..|+|||||.+.+++... -+.++.+-+.+.. .+.++.+..+..-+.+.. ..... .
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 345799999999999999999998432 2456777776654 344444443322111100 00111 1
Q ss_pred ----HHHHHHHHhHcCCCeEEEEEecC
Q 035550 211 ----NKLQEELKKKLSPKKFLLVLDDV 233 (1385)
Q Consensus 211 ----~~~~~~l~~~l~~~~~LlVlDdv 233 (1385)
-.+.+.++. +++++|+++||+
T Consensus 237 ~~~a~tiAEyfrd--~G~~Vll~~Dsl 261 (439)
T PRK06936 237 GFVATSIAEYFRD--QGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHHH--cCCCEEEeccch
Confidence 113334443 589999999999
No 467
>CHL00206 ycf2 Ycf2; Provisional
Probab=91.03 E-value=0.71 Score=61.91 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
.+-|.++|++|.|||.||++++.+
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHh
Confidence 456889999999999999999985
No 468
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=91.03 E-value=0.42 Score=59.03 Aligned_cols=74 Identities=16% Similarity=0.126 Sum_probs=48.5
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccc-cCCcEEEEEeCCCCCHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQD-HFDLKAWTCVSDDFDVIRLTKSI 195 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i 195 (1385)
.+++|.++.++.+...+... +-+.++|++|+||||+|+.+.+. ... .|...+++.- ...+...+++.+
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~--l~~~~~~~~~~~~n-~~~~~~~~~~~v 86 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAEL--LPDEELEDILVYPN-PEDPNMPRIVEV 86 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHH--cCchhheeEEEEeC-CCCCchHHHHHH
Confidence 56889999888888777532 24559999999999999999973 322 3333333322 223445556666
Q ss_pred HHHhcC
Q 035550 196 LLSIAS 201 (1385)
Q Consensus 196 ~~~~~~ 201 (1385)
+.+++.
T Consensus 87 ~~~~g~ 92 (608)
T TIGR00764 87 PAGEGR 92 (608)
T ss_pred HHhhch
Confidence 666554
No 469
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=91.00 E-value=0.3 Score=45.43 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=31.2
Q ss_pred eeechhHHHHHHHHHhcCCc-CCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 119 VYGRETEKKEIVELLLRDDL-RNDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 119 ~vGr~~~~~~l~~~L~~~~~-~~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
++|-.-..+.+++.+..--. ....+.-|++.+|..|+|||.+|+.+++.
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 45554444444444432111 13356679999999999999988888764
No 470
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.97 E-value=0.33 Score=53.15 Aligned_cols=80 Identities=11% Similarity=0.153 Sum_probs=43.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPK 224 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 224 (1385)
.+|.|.|..|.||||+++.+... +...-..++.+.-...+... . ..++.... .......+.++..|+..
T Consensus 81 GlilisG~tGSGKTT~l~all~~--i~~~~~~iitiEdp~E~~~~----~-~~q~~v~~----~~~~~~~~~l~~~lR~~ 149 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSE--LNTPEKNIITVEDPVEYQIP----G-INQVQVNE----KAGLTFARGLRAILRQD 149 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhh--hCCCCCeEEEECCCceecCC----C-ceEEEeCC----cCCcCHHHHHHHHhccC
Confidence 48999999999999999988652 21111122222211111111 0 01111111 11113456677778878
Q ss_pred eEEEEEecCCC
Q 035550 225 KFLLVLDDVWN 235 (1385)
Q Consensus 225 ~~LlVlDdv~~ 235 (1385)
+=.|+++++.+
T Consensus 150 PD~i~vgEiR~ 160 (264)
T cd01129 150 PDIIMVGEIRD 160 (264)
T ss_pred CCEEEeccCCC
Confidence 88999999944
No 471
>PRK09099 type III secretion system ATPase; Provisional
Probab=90.95 E-value=0.63 Score=54.32 Aligned_cols=88 Identities=16% Similarity=0.138 Sum_probs=48.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CCccC-HH-----
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQI-----VDNHD-LN----- 211 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~-~~----- 211 (1385)
+...++|.|..|+|||||++.+...... -..+++..--+.....++.+.+...-..... ..... ..
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~---d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQC---DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 3468999999999999999999874322 1234433333334455555555433211100 00010 11
Q ss_pred HHHHHHHhHc--CCCeEEEEEecC
Q 035550 212 KLQEELKKKL--SPKKFLLVLDDV 233 (1385)
Q Consensus 212 ~~~~~l~~~l--~~~~~LlVlDdv 233 (1385)
...-.+-+++ +++.+|+++||+
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1111233333 489999999999
No 472
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=90.93 E-value=0.5 Score=47.74 Aligned_cols=81 Identities=16% Similarity=0.199 Sum_probs=43.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCC--CCCCccCHHHHHHHHHhHcCC
Q 035550 146 VIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASD--QIVDNHDLNKLQEELKKKLSP 223 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~l~~~l~~ 223 (1385)
++.|.|.+|+||||+|..+.... .. .++++.-...++ .+..+.|....... .+........+.+.+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~--~~---~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS--GL---QVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc--CC---CcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 68899999999999999987631 11 233333333333 34455554433322 121111222344555544433
Q ss_pred CeEEEEEecC
Q 035550 224 KKFLLVLDDV 233 (1385)
Q Consensus 224 ~~~LlVlDdv 233 (1385)
.. ++|+|.+
T Consensus 77 ~~-~VlID~L 85 (170)
T PRK05800 77 GR-CVLVDCL 85 (170)
T ss_pred CC-EEEehhH
Confidence 23 6888987
No 473
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=90.91 E-value=0.19 Score=52.16 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
..+|.|.|.+|+||||+|+.++..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999873
No 474
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=90.87 E-value=0.39 Score=55.90 Aligned_cols=90 Identities=14% Similarity=0.173 Sum_probs=54.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCC-HHHHHHHHHHHhcCCCC-----CCccC-HH----
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFD-VIRLTKSILLSIASDQI-----VDNHD-LN---- 211 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~~~~~~~-----~~~~~-~~---- 211 (1385)
+-+.++|.|.+|+|||+|+.++.+... +.+-+.++++-+.+... ..++.+++...-..... ..... ..
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 346789999999999999999877532 22346788888877653 45555555432111100 01111 11
Q ss_pred -HHHHHHHhHc---CCCeEEEEEecC
Q 035550 212 -KLQEELKKKL---SPKKFLLVLDDV 233 (1385)
Q Consensus 212 -~~~~~l~~~l---~~~~~LlVlDdv 233 (1385)
...-.+-+++ +++++|+++||+
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecCh
Confidence 1122344444 469999999999
No 475
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=90.78 E-value=0.75 Score=53.99 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
....++|+|..|+|||||++.+...
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~ 181 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARN 181 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3568999999999999999998873
No 476
>PRK00300 gmk guanylate kinase; Provisional
Probab=90.78 E-value=0.18 Score=53.38 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
..+|+|+|+.|+||||||+.++..
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999873
No 477
>PRK13948 shikimate kinase; Provisional
Probab=90.76 E-value=0.18 Score=51.39 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+.|.++|+.|+||||+++.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356889999999999999999987
No 478
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=90.74 E-value=0.49 Score=51.10 Aligned_cols=84 Identities=23% Similarity=0.237 Sum_probs=48.1
Q ss_pred cEEEEEEcCCCChHHHHH-HHHhcCccccccCCcE-EEEEeCCCC-CHHHHHHHHHHHhcCCC-------CCCccCH---
Q 035550 144 FSVIPIIGMGGLGKTTLA-QLVYNDKQVQDHFDLK-AWTCVSDDF-DVIRLTKSILLSIASDQ-------IVDNHDL--- 210 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa-~~v~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~~~~~~-------~~~~~~~--- 210 (1385)
-+-++|.|..|+|||+|| ..+.+.. .-+.+ +++-+.+.. ...++.+++.+.-.... ..+....
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 457899999999999996 5565521 23444 556666654 45555555553221110 0010111
Q ss_pred -----HHHHHHHHhHcCCCeEEEEEecC
Q 035550 211 -----NKLQEELKKKLSPKKFLLVLDDV 233 (1385)
Q Consensus 211 -----~~~~~~l~~~l~~~~~LlVlDdv 233 (1385)
-.+.+.++. +++.+|+|+||+
T Consensus 145 a~~~a~aiAE~fr~--~G~~Vlvl~Dsl 170 (274)
T cd01132 145 APYTGCAMGEYFMD--NGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHH--CCCCEEEEEcCh
Confidence 122334433 589999999999
No 479
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=90.73 E-value=0.36 Score=46.44 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=27.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEe
Q 035550 146 VIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCV 182 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 182 (1385)
-+.|+|-||+||+++.+.++.- -+.+.+...+||+.
T Consensus 22 K~vivGng~VGKssmiqryCkg-ifTkdykktIgvdf 57 (246)
T KOG4252|consen 22 KFVIVGNGSVGKSSMIQRYCKG-IFTKDYKKTIGVDF 57 (246)
T ss_pred EEEEECCCccchHHHHHHHhcc-ccccccccccchhh
Confidence 4569999999999999999974 23445667788754
No 480
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=90.68 E-value=0.22 Score=49.50 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
..++.|.|+.|+|||||+++++.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 368899999999999999999985
No 481
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=90.68 E-value=0.19 Score=52.07 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
.++.|+|+.|+|||||++.++..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999874
No 482
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=90.67 E-value=0.32 Score=49.37 Aligned_cols=35 Identities=26% Similarity=0.226 Sum_probs=27.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEE
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTC 181 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 181 (1385)
..||+|+|+.|.|||||.+.+.. .+..=.+.+|+.
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~---LE~~~~G~I~i~ 62 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG---LEEPDSGSITVD 62 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC---CcCCCCceEEEC
Confidence 46999999999999999999876 333445677764
No 483
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.66 E-value=0.3 Score=56.05 Aligned_cols=111 Identities=14% Similarity=0.185 Sum_probs=59.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPK 224 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 224 (1385)
..|.|.|+.|.||||+++.+... +.......++.- .++... ..... ..+..... ...+.....+.++..|+..
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~ti-Edp~E~--~~~~~-~~~i~q~e-vg~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDY--INKNAAGHIITI-EDPIEY--VHRNK-RSLINQRE-VGLDTLSFANALRAALRED 195 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEEE-cCChhh--hccCc-cceEEccc-cCCCCcCHHHHHHHhhccC
Confidence 58999999999999999988762 333344455432 222111 10000 00000000 0111223556677788888
Q ss_pred eEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchhHh
Q 035550 225 KFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQGVA 267 (1385)
Q Consensus 225 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 267 (1385)
+=.|++|.+.+ .+.+..... ....|..|+.|.-...+.
T Consensus 196 pd~i~vgEird--~~~~~~~l~---aa~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 196 PDVILIGEMRD--LETVELALT---AAETGHLVFGTLHTNSAA 233 (343)
T ss_pred CCEEEEeCCCC--HHHHHHHHH---HHHcCCcEEEEEcCCCHH
Confidence 88999999943 344433222 223455566665554443
No 484
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=90.65 E-value=0.17 Score=50.99 Aligned_cols=21 Identities=48% Similarity=0.602 Sum_probs=18.0
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 035550 147 IPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 147 v~i~G~gGiGKTtLa~~v~~~ 167 (1385)
|.|.|.+|+||||+++.+++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 679999999999999999863
No 485
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=90.65 E-value=0.17 Score=50.10 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 035550 146 VIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
||.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999887
No 486
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=90.57 E-value=0.65 Score=54.15 Aligned_cols=84 Identities=18% Similarity=0.241 Sum_probs=47.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCC-CHHHHHHHHHHHhcCCCC------CCccCHH-----
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF-DVIRLTKSILLSIASDQI------VDNHDLN----- 211 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~------~~~~~~~----- 211 (1385)
...++|+|..|+|||||++.+.... ..+.++...+.... +..++...+...-..... .+.....
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 4579999999999999999998632 12333333344332 344444444433211110 0111111
Q ss_pred ----HHHHHHHhHcCCCeEEEEEecC
Q 035550 212 ----KLQEELKKKLSPKKFLLVLDDV 233 (1385)
Q Consensus 212 ----~~~~~l~~~l~~~~~LlVlDdv 233 (1385)
.+.+.++. +++++|+++||+
T Consensus 244 ~~a~aiAEyfrd--~G~~VLl~~Dsl 267 (451)
T PRK05688 244 MYCTRIAEYFRD--KGKNVLLLMDSL 267 (451)
T ss_pred HHHHHHHHHHHH--CCCCEEEEecch
Confidence 12334443 589999999999
No 487
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=90.55 E-value=0.18 Score=47.45 Aligned_cols=71 Identities=21% Similarity=0.142 Sum_probs=40.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSP 223 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 223 (1385)
.+-|.|.|-+|+||||+|.+++.. . ..-|+++++-.....++...=++. .-...+.+.+.+.|...+..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~--~-----~~~~i~isd~vkEn~l~~gyDE~y----~c~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK--T-----GLEYIEISDLVKENNLYEGYDEEY----KCHILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH--h-----CCceEehhhHHhhhcchhcccccc----cCccccHHHHHHHHHHHHhc
Confidence 345789999999999999999852 1 123566655322222222111111 11234556677777766654
Q ss_pred Ce
Q 035550 224 KK 225 (1385)
Q Consensus 224 ~~ 225 (1385)
..
T Consensus 76 Gg 77 (176)
T KOG3347|consen 76 GG 77 (176)
T ss_pred CC
Confidence 33
No 488
>PRK11823 DNA repair protein RadA; Provisional
Probab=90.54 E-value=0.76 Score=54.62 Aligned_cols=83 Identities=18% Similarity=0.173 Sum_probs=47.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCC----CCccCHHHHHHHHH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQI----VDNHDLNKLQEELK 218 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~l~ 218 (1385)
...++.|.|.+|+|||||+.+++... ...-..++|++..+. ..++... ++.++.... ....+.+.+.+.+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~--a~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARL--AAAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 45799999999999999999998742 222245778776443 3333222 344433111 01233444444443
Q ss_pred hHcCCCeEEEEEecC
Q 035550 219 KKLSPKKFLLVLDDV 233 (1385)
Q Consensus 219 ~~l~~~~~LlVlDdv 233 (1385)
+ .+.-++|+|.+
T Consensus 154 ~---~~~~lVVIDSI 165 (446)
T PRK11823 154 E---EKPDLVVIDSI 165 (446)
T ss_pred h---hCCCEEEEech
Confidence 2 24457888887
No 489
>PRK14530 adenylate kinase; Provisional
Probab=90.52 E-value=0.17 Score=53.85 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
+.|.|+|++|+||||+|+.++.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999986
No 490
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=90.51 E-value=0.18 Score=51.23 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
..|.|+|+.|+||||+|+.+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 46899999999999999999873
No 491
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=90.51 E-value=0.19 Score=50.34 Aligned_cols=20 Identities=50% Similarity=0.747 Sum_probs=18.7
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 035550 147 IPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 147 v~i~G~gGiGKTtLa~~v~~ 166 (1385)
|.|+|++|.||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67999999999999999986
No 492
>PRK12678 transcription termination factor Rho; Provisional
Probab=90.51 E-value=0.57 Score=55.22 Aligned_cols=90 Identities=19% Similarity=0.186 Sum_probs=46.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEE-EEeCCCC-CHHHHHHHHHHHhcCCCCCCccC----HHHHHHH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAW-TCVSDDF-DVIRLTKSILLSIASDQIVDNHD----LNKLQEE 216 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w-v~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~ 216 (1385)
.-..+.|+|.+|+|||||++.+++... ..+-++.++ +-+.+.. .+.++.+.+-.++.......... ...+.-.
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~-~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAIT-TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHh-hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 345788999999999999999998321 122233333 3344432 23333333211111111101111 1112222
Q ss_pred HHhHc--CCCeEEEEEecC
Q 035550 217 LKKKL--SPKKFLLVLDDV 233 (1385)
Q Consensus 217 l~~~l--~~~~~LlVlDdv 233 (1385)
+-+++ .++.+||++|++
T Consensus 494 ~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHcCCCEEEEEeCc
Confidence 33333 689999999999
No 493
>PLN02348 phosphoribulokinase
Probab=90.49 E-value=0.19 Score=56.84 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
....+|+|.|.+|+||||+|+.+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999887
No 494
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=90.44 E-value=1.3 Score=50.19 Aligned_cols=44 Identities=30% Similarity=0.332 Sum_probs=30.1
Q ss_pred hHHHHHHHHHhcCCcC---CCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 124 TEKKEIVELLLRDDLR---NDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 124 ~~~~~l~~~L~~~~~~---~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
--.++|+++|...... ......||..+|.-|.||||-|.++++.
T Consensus 77 iV~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~ 123 (451)
T COG0541 77 IVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKY 123 (451)
T ss_pred HHHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHH
Confidence 3445666666532111 1234689999999999999999888773
No 495
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=90.43 E-value=0.99 Score=53.66 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=46.7
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCC----CCccCHHHHHHHH
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQI----VDNHDLNKLQEEL 217 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~l 217 (1385)
..-.++.|.|.+|+|||||+.+++... ...-..++|++..+. ..++... +..++.... ....+.+.+.+.+
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~--a~~g~kvlYvs~EEs--~~qi~~r-a~rlg~~~~~l~~~~e~~~~~I~~~i 166 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQL--AKNQMKVLYVSGEES--LQQIKMR-AIRLGLPEPNLYVLSETNWEQICANI 166 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH--HhcCCcEEEEECcCC--HHHHHHH-HHHcCCChHHeEEcCCCCHHHHHHHH
Confidence 345799999999999999999987632 222235778765443 3332221 223322110 0123344444444
Q ss_pred HhHcCCCeEEEEEecC
Q 035550 218 KKKLSPKKFLLVLDDV 233 (1385)
Q Consensus 218 ~~~l~~~~~LlVlDdv 233 (1385)
.+ .+.-++|+|.+
T Consensus 167 ~~---~~~~~vVIDSI 179 (454)
T TIGR00416 167 EE---ENPQACVIDSI 179 (454)
T ss_pred Hh---cCCcEEEEecc
Confidence 32 24447888877
No 496
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=90.37 E-value=0.73 Score=53.59 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
....++|+|..|+|||||++.+...
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcc
Confidence 3568999999999999999998873
No 497
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=90.35 E-value=0.5 Score=43.99 Aligned_cols=81 Identities=17% Similarity=0.140 Sum_probs=41.4
Q ss_pred EEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeC-CCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeE
Q 035550 148 PIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVS-DDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKF 226 (1385)
Q Consensus 148 ~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 226 (1385)
.|.|.+|+|||+|+..+..| ...+.|-..+-|..- +..++. -..+....+ +...-+........+.++..-
T Consensus 12 lIigDsgVGKssLl~rF~dd-tFs~sYitTiGvDfkirTv~i~------G~~VkLqIw-DtAGqErFrtitstyyrgthg 83 (198)
T KOG0079|consen 12 LIIGDSGVGKSSLLLRFADD-TFSGSYITTIGVDFKIRTVDIN------GDRVKLQIW-DTAGQERFRTITSTYYRGTHG 83 (198)
T ss_pred HeecCCcccHHHHHHHHhhc-ccccceEEEeeeeEEEEEeecC------CcEEEEEEe-ecccHHHHHHHHHHHccCCce
Confidence 38899999999999998876 343333222222110 000000 000000001 122233334444555678888
Q ss_pred EEEEecCCCC
Q 035550 227 LLVLDDVWNE 236 (1385)
Q Consensus 227 LlVlDdv~~~ 236 (1385)
++|+=||-+.
T Consensus 84 v~vVYDVTn~ 93 (198)
T KOG0079|consen 84 VIVVYDVTNG 93 (198)
T ss_pred EEEEEECcch
Confidence 8999898543
No 498
>PRK14737 gmk guanylate kinase; Provisional
Probab=90.33 E-value=0.26 Score=50.77 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
...+|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3578999999999999999999873
No 499
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=90.31 E-value=1.1 Score=54.08 Aligned_cols=49 Identities=18% Similarity=0.159 Sum_probs=34.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHH
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKS 194 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 194 (1385)
..-+++.|.|.+|+||||||.++... ....-..++++..-+ +..++.+.
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eE--s~~~i~~~ 309 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEE--SRAQLLRN 309 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeC--CHHHHHHH
Confidence 45679999999999999999998873 222334566766544 34445444
No 500
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=90.31 E-value=0.58 Score=54.19 Aligned_cols=90 Identities=17% Similarity=0.287 Sum_probs=53.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccc--cCC---------cEEEEEeCCCCCHHHHHHHHHHHhc-CCCC------C
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQD--HFD---------LKAWTCVSDDFDVIRLTKSILLSIA-SDQI------V 205 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~--~f~---------~~~wv~~~~~~~~~~~~~~i~~~~~-~~~~------~ 205 (1385)
-+-++|.|-.|+|||||+.++.+...... ..| .++++-+.+.....+.+.+.+..-+ .... .
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ats 220 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLA 220 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECC
Confidence 45789999999999999999987533100 012 5667777777666665555555443 1110 0
Q ss_pred CccCHHH-----HHHHHHhHcC---CCeEEEEEecC
Q 035550 206 DNHDLNK-----LQEELKKKLS---PKKFLLVLDDV 233 (1385)
Q Consensus 206 ~~~~~~~-----~~~~l~~~l~---~~~~LlVlDdv 233 (1385)
+...... ..-.+-++++ ++++|+++||+
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~Dsl 256 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDM 256 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccCh
Confidence 1111111 1123444443 69999999999
Done!