Query 035550
Match_columns 1385
No_of_seqs 902 out of 5812
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 05:59:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035550.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035550hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 7.7E-49 2.6E-53 505.2 30.8 398 935-1376 339-766 (768)
2 2a5y_B CED-4; apoptosis; HET: 100.0 6.1E-46 2.1E-50 455.2 22.0 317 120-459 131-473 (549)
3 3rgz_A Protein brassinosteroid 100.0 1.5E-44 5.1E-49 465.3 32.8 637 522-1333 69-742 (768)
4 1ziw_A TOLL-like receptor 3; i 100.0 7.1E-38 2.4E-42 400.9 44.2 207 1138-1354 405-622 (680)
5 1ziw_A TOLL-like receptor 3; i 100.0 4.9E-36 1.7E-40 383.8 41.2 98 530-629 25-126 (680)
6 3t6q_A CD180 antigen; protein- 100.0 1.1E-35 3.6E-40 375.4 39.1 297 973-1353 255-559 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 7.6E-36 2.6E-40 376.8 37.3 179 1139-1331 377-558 (606)
8 1vt4_I APAF-1 related killer D 100.0 7.3E-38 2.5E-42 380.4 16.7 285 119-450 130-436 (1221)
9 3t6q_A CD180 antigen; protein- 100.0 1.9E-35 6.6E-40 373.0 35.3 248 972-1272 278-533 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 8.4E-36 2.9E-40 376.3 27.3 200 530-769 32-237 (606)
11 3sfz_A APAF-1, apoptotic pepti 100.0 8.5E-36 2.9E-40 411.2 23.0 311 115-457 122-452 (1249)
12 3j0a_A TOLL-like receptor 5; m 100.0 3.6E-32 1.2E-36 353.9 36.7 102 528-629 22-128 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 3.3E-32 1.1E-36 341.3 29.1 81 530-610 28-110 (570)
14 1z6t_A APAF-1, apoptotic prote 100.0 5.9E-33 2E-37 347.4 21.7 306 115-454 122-449 (591)
15 2z81_A CD282 antigen, TOLL-lik 100.0 7.5E-32 2.6E-36 336.0 29.1 200 530-771 26-233 (549)
16 4eco_A Uncharacterized protein 100.0 2.4E-32 8.2E-37 342.9 22.3 102 1139-1245 489-598 (636)
17 3j0a_A TOLL-like receptor 5; m 100.0 2.2E-30 7.7E-35 337.0 40.1 124 499-629 23-153 (844)
18 4eco_A Uncharacterized protein 100.0 3.4E-32 1.2E-36 341.4 20.4 103 1139-1244 434-546 (636)
19 2z81_A CD282 antigen, TOLL-lik 100.0 4.9E-31 1.7E-35 328.6 29.8 81 533-616 8-89 (549)
20 2z63_A TOLL-like receptor 4, v 100.0 6.1E-31 2.1E-35 329.8 28.8 122 500-629 28-154 (570)
21 4ecn_A Leucine-rich repeat pro 100.0 3.3E-31 1.1E-35 335.6 25.8 104 1139-1247 729-840 (876)
22 2z7x_B TOLL-like receptor 1, v 100.0 1E-29 3.5E-34 314.0 29.9 108 1138-1249 374-483 (520)
23 4ecn_A Leucine-rich repeat pro 100.0 3.1E-30 1.1E-34 326.7 25.5 105 1138-1245 673-787 (876)
24 4g8a_A TOLL-like receptor 4; l 100.0 1.8E-29 6.2E-34 321.7 28.8 520 530-1250 52-583 (635)
25 2z7x_B TOLL-like receptor 1, v 100.0 4.6E-29 1.6E-33 308.1 28.3 83 533-618 3-86 (520)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3E-28 1E-32 303.0 28.0 87 530-619 31-118 (562)
27 4g8a_A TOLL-like receptor 4; l 100.0 3.4E-28 1.2E-32 309.9 28.1 249 972-1273 328-578 (635)
28 1jl5_A Outer protein YOPM; leu 100.0 9.5E-28 3.3E-32 286.8 25.7 397 528-1246 9-408 (454)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7E-27 2.4E-31 290.7 26.7 102 522-629 46-151 (562)
30 1jl5_A Outer protein YOPM; leu 99.9 6E-26 2E-30 271.3 28.1 64 546-610 5-68 (454)
31 3bz5_A Internalin-J, INLJ; leu 99.9 4.5E-26 1.5E-30 272.6 21.0 98 523-629 35-132 (457)
32 3v47_A TOLL-like receptor 5B a 99.9 4E-25 1.4E-29 268.0 26.6 262 972-1273 129-406 (455)
33 3v47_A TOLL-like receptor 5B a 99.9 3.6E-25 1.2E-29 268.5 25.5 110 1138-1247 299-408 (455)
34 3bz5_A Internalin-J, INLJ; leu 99.9 2.9E-25 1E-29 265.5 23.6 182 973-1230 213-394 (457)
35 1o6v_A Internalin A; bacterial 99.9 2E-24 7E-29 261.4 26.8 86 527-617 43-128 (466)
36 1o6v_A Internalin A; bacterial 99.9 1.6E-22 5.5E-27 244.7 26.9 349 909-1336 44-392 (466)
37 4fmz_A Internalin; leucine ric 99.9 1.1E-22 3.8E-27 236.6 23.1 189 1139-1352 156-344 (347)
38 4fmz_A Internalin; leucine ric 99.9 1.9E-21 6.5E-26 226.1 26.6 304 936-1329 41-344 (347)
39 2id5_A Lingo-1, leucine rich r 99.9 3.6E-21 1.2E-25 234.4 29.8 113 1138-1250 224-336 (477)
40 2id5_A Lingo-1, leucine rich r 99.9 1.8E-21 6.3E-26 237.0 25.5 296 972-1329 32-331 (477)
41 3o6n_A APL1; leucine-rich repe 99.9 2.4E-21 8.2E-26 228.9 25.2 305 938-1352 44-350 (390)
42 3o6n_A APL1; leucine-rich repe 99.9 4.6E-21 1.6E-25 226.5 23.6 152 909-1078 43-196 (390)
43 3oja_B Anopheles plasmodium-re 99.9 7E-21 2.4E-25 237.6 25.3 259 938-1272 50-311 (597)
44 3oja_B Anopheles plasmodium-re 99.9 6.5E-21 2.2E-25 237.9 23.4 305 909-1272 49-355 (597)
45 1ogq_A PGIP-2, polygalacturona 99.8 3.3E-21 1.1E-25 219.0 13.0 106 1139-1245 126-232 (313)
46 1xku_A Decorin; proteoglycan, 99.8 1.9E-19 6.6E-24 207.1 25.8 291 939-1272 31-329 (330)
47 2ft3_A Biglycan; proteoglycan, 99.8 2.4E-19 8.4E-24 206.3 23.1 179 1138-1329 147-331 (332)
48 2ft3_A Biglycan; proteoglycan, 99.8 2.9E-19 9.9E-24 205.7 23.2 244 972-1272 78-330 (332)
49 1xku_A Decorin; proteoglycan, 99.8 5.7E-19 2E-23 203.2 25.3 291 972-1328 31-329 (330)
50 4fcg_A Uncharacterized protein 99.8 4.7E-20 1.6E-24 210.7 15.8 191 528-778 79-270 (328)
51 4fcg_A Uncharacterized protein 99.8 2.5E-19 8.7E-24 204.6 20.2 229 972-1243 81-310 (328)
52 3ogk_B Coronatine-insensitive 99.8 3.6E-20 1.2E-24 232.9 6.7 185 1138-1334 318-528 (592)
53 1ogq_A PGIP-2, polygalacturona 99.8 2E-19 6.8E-24 204.3 11.4 246 973-1272 51-301 (313)
54 3g06_A SSPH2 (leucine-rich rep 99.8 1.7E-17 5.7E-22 203.7 26.4 256 972-1329 40-295 (622)
55 1z7x_W Ribonuclease inhibitor; 99.8 1.7E-20 5.7E-25 227.9 -1.3 209 1138-1352 199-438 (461)
56 2z80_A TOLL-like receptor 2, v 99.8 5.8E-18 2E-22 196.7 17.2 37 1292-1329 275-312 (353)
57 3o53_A Protein LRIM1, AGAP0063 99.8 7.5E-19 2.5E-23 200.3 9.1 219 969-1247 31-250 (317)
58 3ogk_B Coronatine-insensitive 99.7 9.8E-20 3.4E-24 228.9 -1.2 411 907-1355 69-526 (592)
59 2z80_A TOLL-like receptor 2, v 99.7 1.3E-17 4.6E-22 193.6 16.8 204 1138-1352 100-312 (353)
60 3zyi_A Leucine-rich repeat-con 99.7 3E-17 1E-21 197.6 20.4 228 971-1248 74-304 (452)
61 2z66_A Variable lymphocyte rec 99.7 1.2E-17 4.1E-22 189.9 15.8 225 972-1247 28-261 (306)
62 3g06_A SSPH2 (leucine-rich rep 99.7 1.3E-16 4.6E-21 195.7 25.8 257 996-1354 40-297 (622)
63 2z66_A Variable lymphocyte rec 99.7 1.7E-17 5.7E-22 188.7 16.3 243 974-1272 9-258 (306)
64 3zyj_A Leucine-rich repeat-con 99.7 5.3E-17 1.8E-21 194.7 21.1 229 971-1249 63-294 (440)
65 1z7x_W Ribonuclease inhibitor; 99.7 6.6E-20 2.3E-24 222.6 -4.4 164 908-1078 25-209 (461)
66 3o53_A Protein LRIM1, AGAP0063 99.7 6.1E-19 2.1E-23 201.1 3.2 79 973-1056 11-91 (317)
67 3oja_A Leucine-rich immune mol 99.7 6.5E-18 2.2E-22 203.9 11.6 218 970-1247 32-250 (487)
68 2p1m_B Transport inhibitor res 99.7 1.1E-19 3.6E-24 228.9 -5.6 161 907-1078 62-245 (594)
69 1ozn_A Reticulon 4 receptor; N 99.7 5E-17 1.7E-21 182.5 16.7 130 1139-1272 106-235 (285)
70 3zyj_A Leucine-rich repeat-con 99.7 1.7E-16 6E-21 190.2 21.6 242 973-1273 44-290 (440)
71 3zyi_A Leucine-rich repeat-con 99.7 2.1E-16 7.1E-21 190.3 21.4 243 973-1273 55-301 (452)
72 1ozn_A Reticulon 4 receptor; N 99.7 8E-17 2.7E-21 180.8 16.2 204 1136-1353 30-237 (285)
73 2xwt_C Thyrotropin receptor; s 99.7 1.1E-16 3.9E-21 174.2 16.0 202 1136-1354 29-239 (239)
74 1wwl_A Monocyte differentiatio 99.7 6E-18 2.1E-22 192.3 5.4 203 1138-1353 95-308 (312)
75 2p1m_B Transport inhibitor res 99.7 2E-18 6.9E-23 217.1 1.4 376 908-1330 102-518 (594)
76 1wwl_A Monocyte differentiatio 99.7 5.4E-18 1.9E-22 192.7 4.0 107 1139-1245 150-264 (312)
77 2z62_A TOLL-like receptor 4, v 99.7 3.3E-16 1.1E-20 174.9 15.4 207 1136-1355 26-244 (276)
78 3oja_A Leucine-rich immune mol 99.7 2.2E-16 7.4E-21 190.6 14.2 149 1162-1326 120-270 (487)
79 1p9a_G Platelet glycoprotein I 99.6 2.7E-15 9.1E-20 167.7 18.8 177 1137-1329 30-206 (290)
80 1p9a_G Platelet glycoprotein I 99.6 2.5E-15 8.5E-20 167.9 17.9 110 1138-1248 100-209 (290)
81 2o6q_A Variable lymphocyte rec 99.6 2.4E-15 8.1E-20 167.0 17.6 181 1136-1329 35-216 (270)
82 3rfs_A Internalin B, repeat mo 99.6 2.3E-15 7.7E-20 167.2 15.2 163 1138-1319 85-247 (272)
83 2o6q_A Variable lymphocyte rec 99.6 1.2E-14 4.1E-19 161.3 19.1 108 1138-1245 109-216 (270)
84 4glp_A Monocyte differentiatio 99.6 1.8E-15 6E-20 171.9 11.8 203 1138-1353 91-306 (310)
85 2z62_A TOLL-like receptor 4, v 99.6 1.1E-14 3.8E-19 162.4 16.8 202 972-1247 28-237 (276)
86 2xwt_C Thyrotropin receptor; s 99.6 1.5E-14 5.1E-19 157.3 16.7 103 1139-1244 81-189 (239)
87 4glp_A Monocyte differentiatio 99.6 2.8E-14 9.7E-19 161.9 18.9 203 972-1246 91-306 (310)
88 3rfs_A Internalin B, repeat mo 99.6 1.3E-14 4.4E-19 161.1 15.1 124 1138-1272 109-232 (272)
89 1h6u_A Internalin H; cell adhe 99.6 3.9E-15 1.3E-19 168.3 11.0 191 527-772 38-228 (308)
90 1w5s_A Origin recognition comp 99.6 1.2E-14 4.2E-19 173.0 15.7 312 116-446 21-387 (412)
91 2qen_A Walker-type ATPase; unk 99.6 2.1E-14 7.1E-19 167.0 16.4 294 115-451 10-349 (350)
92 1h6u_A Internalin H; cell adhe 99.5 2.4E-14 8.3E-19 161.8 14.8 99 1139-1245 130-228 (308)
93 3m19_A Variable lymphocyte rec 99.5 5.3E-14 1.8E-18 154.1 15.2 133 1136-1272 33-165 (251)
94 3m19_A Variable lymphocyte rec 99.5 1E-13 3.6E-18 151.7 16.4 176 1138-1329 14-190 (251)
95 4ay9_X Follicle-stimulating ho 99.5 7.9E-14 2.7E-18 161.1 16.0 205 1137-1349 29-254 (350)
96 2fna_A Conserved hypothetical 99.5 2.4E-13 8.2E-18 158.5 19.4 292 115-450 11-356 (357)
97 2ast_B S-phase kinase-associat 99.5 2.6E-15 8.7E-20 173.4 2.5 65 1205-1272 217-282 (336)
98 4ay9_X Follicle-stimulating ho 99.5 4.4E-13 1.5E-17 154.8 20.5 169 1143-1327 85-255 (350)
99 2ca6_A RAN GTPase-activating p 99.5 3.9E-15 1.3E-19 175.1 0.9 109 1138-1246 159-286 (386)
100 2o6s_A Variable lymphocyte rec 99.5 1.6E-13 5.3E-18 145.6 13.0 171 1136-1329 26-196 (208)
101 3goz_A Leucine-rich repeat-con 99.5 7.4E-15 2.5E-19 170.7 2.7 136 1138-1273 138-295 (362)
102 2ast_B S-phase kinase-associat 99.5 7.7E-15 2.6E-19 169.4 2.3 86 526-611 64-153 (336)
103 1h6t_A Internalin B; cell adhe 99.4 2.5E-13 8.6E-18 151.9 11.2 170 526-772 42-211 (291)
104 2ca6_A RAN GTPase-activating p 99.4 2.1E-14 7E-19 169.0 2.4 110 1138-1247 187-316 (386)
105 3cvr_A Invasion plasmid antige 99.4 7.9E-13 2.7E-17 160.0 14.7 92 972-1078 59-150 (571)
106 4ezg_A Putative uncharacterize 99.4 4.7E-13 1.6E-17 140.2 10.5 104 1138-1245 44-147 (197)
107 1h6t_A Internalin B; cell adhe 99.4 1.1E-12 3.7E-17 146.8 12.2 172 1138-1336 46-217 (291)
108 3goz_A Leucine-rich repeat-con 99.4 2.5E-14 8.5E-19 166.3 -2.1 238 1102-1352 22-295 (362)
109 2v9t_B SLIT homolog 2 protein 99.4 2.2E-12 7.6E-17 137.4 12.1 134 1136-1273 30-163 (220)
110 1m9s_A Internalin B; cell inva 99.4 8.8E-13 3E-17 161.8 10.0 170 526-772 39-208 (605)
111 3cvr_A Invasion plasmid antige 99.4 3.4E-12 1.2E-16 154.5 15.0 176 1102-1329 59-241 (571)
112 4ezg_A Putative uncharacterize 99.3 1.9E-12 6.6E-17 135.5 10.8 152 1159-1352 41-192 (197)
113 2v1u_A Cell division control p 99.3 1.4E-11 4.7E-16 145.3 19.3 295 116-433 18-351 (387)
114 2qby_B CDC6 homolog 3, cell di 99.3 3.4E-11 1.1E-15 141.6 22.3 293 117-433 20-339 (384)
115 1xeu_A Internalin C; cellular 99.3 7.7E-13 2.6E-17 145.3 6.2 167 528-772 17-183 (263)
116 2v9t_B SLIT homolog 2 protein 99.3 7.2E-12 2.4E-16 133.5 13.3 125 1141-1272 14-138 (220)
117 2xot_A Amphoterin-induced prot 99.3 3E-12 1E-16 148.4 10.2 134 1136-1273 37-174 (361)
118 3e6j_A Variable lymphocyte rec 99.3 1E-11 3.6E-16 133.2 13.7 106 1138-1245 40-146 (229)
119 3e6j_A Variable lymphocyte rec 99.3 6.1E-12 2.1E-16 135.0 11.7 131 1162-1305 40-170 (229)
120 2v70_A SLIT-2, SLIT homolog 2 99.3 6.2E-12 2.1E-16 133.9 11.4 134 1136-1273 30-164 (220)
121 1m9s_A Internalin B; cell inva 99.3 6.5E-12 2.2E-16 154.1 12.6 170 972-1201 43-212 (605)
122 2v70_A SLIT-2, SLIT homolog 2 99.3 1.4E-11 4.9E-16 131.1 13.5 111 1138-1248 57-167 (220)
123 2o6s_A Variable lymphocyte rec 99.3 3.1E-11 1.1E-15 127.8 15.5 124 1138-1272 52-175 (208)
124 1fnn_A CDC6P, cell division co 99.3 1.2E-10 4.1E-15 137.2 21.7 296 117-433 17-351 (389)
125 2xot_A Amphoterin-induced prot 99.3 6.9E-12 2.4E-16 145.3 10.5 125 1141-1272 21-146 (361)
126 1xeu_A Internalin C; cellular 99.3 4.2E-12 1.4E-16 139.4 8.2 171 1138-1336 19-189 (263)
127 2ell_A Acidic leucine-rich nuc 99.2 6.4E-12 2.2E-16 127.8 7.6 136 1135-1273 21-158 (168)
128 1dce_A Protein (RAB geranylger 99.2 4.5E-14 1.5E-18 172.3 -10.9 124 1139-1268 442-566 (567)
129 2ell_A Acidic leucine-rich nuc 99.2 1.4E-11 4.9E-16 125.2 9.2 139 1159-1336 21-164 (168)
130 2qby_A CDC6 homolog 1, cell di 99.2 8.4E-11 2.9E-15 138.5 16.9 294 116-432 19-347 (386)
131 2je0_A Acidic leucine-rich nuc 99.2 6.1E-12 2.1E-16 125.0 5.5 132 1136-1270 15-148 (149)
132 2je0_A Acidic leucine-rich nuc 99.2 3E-11 1E-15 120.0 7.4 108 1160-1272 15-123 (149)
133 1dce_A Protein (RAB geranylger 99.1 2.1E-12 7.1E-17 157.7 -4.0 175 526-772 345-544 (567)
134 1w8a_A SLIT protein; signaling 99.1 1.4E-10 4.7E-15 120.5 9.9 112 1136-1247 27-139 (192)
135 2wfh_A SLIT homolog 2 protein 99.1 2.6E-10 8.8E-15 118.3 10.9 112 1136-1248 29-140 (193)
136 1njg_A DNA polymerase III subu 99.1 3.1E-10 1E-14 124.4 11.9 199 117-331 23-231 (250)
137 1w8a_A SLIT protein; signaling 99.1 2.2E-10 7.6E-15 119.0 9.8 127 1140-1273 10-137 (192)
138 3sb4_A Hypothetical leucine ri 99.1 5.8E-10 2E-14 127.4 14.1 125 1138-1268 202-327 (329)
139 4b8c_D Glucose-repressible alc 99.1 3.9E-11 1.3E-15 151.5 3.5 81 539-621 210-290 (727)
140 2o6r_A Variable lymphocyte rec 99.0 7.3E-10 2.5E-14 113.6 11.1 112 1136-1247 26-137 (177)
141 2wfh_A SLIT homolog 2 protein 99.0 5.8E-10 2E-14 115.7 9.7 125 1141-1273 13-137 (193)
142 1a9n_A U2A', U2A'; complex (nu 99.0 2.3E-10 7.9E-15 117.1 6.2 131 1138-1273 19-151 (176)
143 1a9n_A U2A', U2A'; complex (nu 99.0 5.3E-10 1.8E-14 114.4 8.1 125 496-631 15-147 (176)
144 4b8c_D Glucose-repressible alc 99.0 4.3E-10 1.5E-14 142.0 7.9 105 523-629 217-321 (727)
145 2chg_A Replication factor C sm 99.0 2.4E-09 8.4E-14 115.0 12.5 184 117-327 17-203 (226)
146 2o6r_A Variable lymphocyte rec 98.9 2.6E-09 9E-14 109.4 11.5 128 1139-1273 8-135 (177)
147 3sb4_A Hypothetical leucine ri 98.9 6.2E-09 2.1E-13 118.8 11.9 161 1161-1339 100-317 (329)
148 3g39_A Variable lymphocyte rec 98.8 6.9E-09 2.3E-13 105.0 10.0 106 1139-1247 10-115 (170)
149 4fdw_A Leucine rich hypothetic 98.8 9.7E-08 3.3E-12 111.0 20.7 125 1139-1271 249-379 (401)
150 1ds9_A Outer arm dynein; leuci 98.8 5E-11 1.7E-15 124.8 -7.4 126 1139-1272 19-150 (198)
151 1hqc_A RUVB; extended AAA-ATPa 98.8 2.1E-09 7.2E-14 122.7 5.3 268 117-432 12-324 (324)
152 2r9u_A Variable lymphocyte rec 98.8 1.1E-08 3.7E-13 103.9 10.0 104 1141-1247 15-118 (174)
153 1sxj_B Activator 1 37 kDa subu 98.8 1E-08 3.5E-13 117.1 10.2 186 117-329 21-211 (323)
154 3g39_A Variable lymphocyte rec 98.7 2.4E-08 8.1E-13 101.0 9.8 104 1163-1273 10-113 (170)
155 2r9u_A Variable lymphocyte rec 98.7 3.3E-08 1.1E-12 100.3 10.0 103 1164-1273 14-116 (174)
156 1ds9_A Outer arm dynein; leuci 98.7 4.9E-10 1.7E-14 117.2 -3.9 102 524-629 42-145 (198)
157 4fdw_A Leucine rich hypothetic 98.7 8E-07 2.7E-11 103.3 22.0 105 1138-1246 271-382 (401)
158 3un9_A NLR family member X1; l 98.6 2.5E-09 8.6E-14 123.1 -2.2 135 1138-1272 72-221 (372)
159 3te6_A Regulatory protein SIR3 98.6 2.2E-07 7.5E-12 102.1 11.6 171 118-294 21-211 (318)
160 2ifg_A High affinity nerve gro 98.5 1.1E-07 3.7E-12 109.6 8.9 106 1142-1249 12-118 (347)
161 4fs7_A Uncharacterized protein 98.5 2.2E-06 7.4E-11 100.4 18.5 126 1182-1327 249-375 (394)
162 1iqp_A RFCS; clamp loader, ext 98.5 1.2E-07 4E-12 108.4 7.3 183 117-329 25-213 (327)
163 2ifg_A High affinity nerve gro 98.4 2E-07 7E-12 107.3 7.6 84 526-610 27-113 (347)
164 1jr3_A DNA polymerase III subu 98.4 8E-07 2.8E-11 103.5 11.3 196 117-328 16-221 (373)
165 4fs7_A Uncharacterized protein 98.3 1.2E-05 4E-10 94.1 20.0 187 1139-1350 186-375 (394)
166 2chq_A Replication factor C sm 98.3 1.1E-06 3.8E-11 99.8 10.3 181 117-327 17-203 (319)
167 3un9_A NLR family member X1; l 98.2 6.5E-08 2.2E-12 111.3 -2.7 136 1138-1273 101-250 (372)
168 1jbk_A CLPB protein; beta barr 98.2 1.7E-06 5.9E-11 89.9 7.5 45 117-167 22-66 (195)
169 3bos_A Putative DNA replicatio 98.1 1E-06 3.5E-11 95.5 4.3 172 118-327 29-216 (242)
170 2ra8_A Uncharacterized protein 98.1 2.5E-06 8.4E-11 97.0 6.9 62 1154-1218 164-227 (362)
171 3pfi_A Holliday junction ATP-d 98.1 1.2E-05 4.3E-10 91.7 12.2 177 117-327 29-226 (338)
172 1sxj_D Activator 1 41 kDa subu 98.0 6.6E-06 2.3E-10 94.8 9.1 195 117-327 37-234 (353)
173 3e4g_A ATP synthase subunit S, 98.0 3E-06 1E-10 83.6 4.2 88 1235-1333 62-154 (176)
174 4gt6_A Cell surface protein; l 98.0 9.7E-05 3.3E-09 86.2 17.9 109 1155-1272 258-367 (394)
175 2ra8_A Uncharacterized protein 98.0 2.5E-06 8.4E-11 97.0 3.2 33 1138-1170 193-227 (362)
176 2z4s_A Chromosomal replication 98.0 2E-05 6.8E-10 92.5 10.9 160 144-325 130-303 (440)
177 1sxj_A Activator 1 95 kDa subu 97.9 2E-05 7E-10 94.9 11.1 198 117-329 39-254 (516)
178 3pvs_A Replication-associated 97.9 2.7E-05 9.1E-10 91.1 10.3 176 117-325 26-212 (447)
179 4gt6_A Cell surface protein; l 97.9 0.00085 2.9E-08 78.2 22.6 36 1182-1218 261-296 (394)
180 3uk6_A RUVB-like 2; hexameric 97.8 5E-05 1.7E-09 87.9 11.6 197 117-325 44-300 (368)
181 1sxj_E Activator 1 40 kDa subu 97.8 3.8E-05 1.3E-09 88.4 10.4 194 117-327 14-236 (354)
182 1d2n_A N-ethylmaleimide-sensit 97.8 0.0001 3.4E-09 81.0 13.1 171 118-320 34-229 (272)
183 2qz4_A Paraplegin; AAA+, SPG7, 97.8 6.7E-05 2.3E-09 82.1 11.7 186 117-326 6-220 (262)
184 1a5t_A Delta prime, HOLB; zinc 97.8 0.00011 3.8E-09 83.0 13.5 173 122-328 7-205 (334)
185 3h4m_A Proteasome-activating n 97.8 2.5E-05 8.5E-10 86.7 7.4 184 116-325 16-228 (285)
186 3syl_A Protein CBBX; photosynt 97.7 3.9E-05 1.3E-09 86.3 8.0 159 118-295 32-218 (309)
187 2p65_A Hypothetical protein PF 97.7 2.4E-05 8.1E-10 80.5 5.1 45 117-167 22-66 (187)
188 3u61_B DNA polymerase accessor 97.7 0.0001 3.5E-09 83.4 10.8 174 117-324 26-212 (324)
189 4h09_A Hypothetical leucine ri 97.7 0.0029 1E-07 73.2 22.6 85 1157-1244 212-296 (379)
190 1xwi_A SKD1 protein; VPS4B, AA 97.6 0.00061 2.1E-08 76.3 16.0 188 117-328 12-223 (322)
191 3eie_A Vacuolar protein sortin 97.6 0.00021 7.2E-09 80.4 12.3 185 117-327 18-227 (322)
192 3n70_A Transport activator; si 97.6 3.5E-05 1.2E-09 75.1 4.9 114 118-263 2-115 (145)
193 1io0_A Tropomodulin; LRR prote 97.6 6.6E-06 2.3E-10 84.1 -0.4 119 1155-1273 29-162 (185)
194 3e4g_A ATP synthase subunit S, 97.6 3E-05 1E-09 76.4 3.9 84 1186-1272 61-149 (176)
195 3d8b_A Fidgetin-like protein 1 97.6 0.00017 5.8E-09 82.3 10.3 187 117-328 84-295 (357)
196 1sxj_C Activator 1 40 kDa subu 97.6 0.00016 5.4E-09 82.3 9.8 182 117-325 25-209 (340)
197 3rw6_A Nuclear RNA export fact 97.6 4.8E-05 1.6E-09 81.4 5.1 79 527-606 167-257 (267)
198 1l8q_A Chromosomal replication 97.6 0.00028 9.6E-09 79.7 11.7 154 144-322 37-202 (324)
199 4h09_A Hypothetical leucine ri 97.6 0.0044 1.5E-07 71.7 22.3 123 1139-1271 218-342 (379)
200 2qp9_X Vacuolar protein sortin 97.5 0.0002 6.9E-09 81.5 10.1 186 117-327 51-260 (355)
201 2w58_A DNAI, primosome compone 97.5 4.7E-05 1.6E-09 79.3 4.5 121 123-264 35-159 (202)
202 3ec2_A DNA replication protein 97.5 7.5E-05 2.5E-09 76.1 5.2 122 122-264 19-143 (180)
203 3b9p_A CG5977-PA, isoform A; A 97.4 0.00047 1.6E-08 76.8 11.5 183 117-327 21-232 (297)
204 3rw6_A Nuclear RNA export fact 97.4 2E-05 6.9E-10 84.4 0.1 67 1159-1227 167-237 (267)
205 3vfd_A Spastin; ATPase, microt 97.4 0.00063 2.1E-08 78.8 12.5 187 116-327 114-325 (389)
206 3pxg_A Negative regulator of g 97.4 0.00098 3.4E-08 78.9 14.3 145 117-294 180-338 (468)
207 2zan_A Vacuolar protein sortin 97.4 0.0014 4.7E-08 77.0 15.0 188 116-327 133-344 (444)
208 2gno_A DNA polymerase III, gam 97.4 0.00033 1.1E-08 77.3 9.0 149 121-294 1-152 (305)
209 1io0_A Tropomodulin; LRR prote 97.4 2.4E-05 8.3E-10 79.9 -0.1 110 1138-1247 36-164 (185)
210 1qvr_A CLPB protein; coiled co 97.2 0.00022 7.4E-09 91.8 6.5 45 117-167 170-214 (854)
211 3cf0_A Transitional endoplasmi 97.2 0.0015 5.3E-08 72.4 12.0 181 117-323 15-223 (301)
212 3co5_A Putative two-component 97.2 0.00013 4.6E-09 70.6 2.6 47 117-167 4-50 (143)
213 1in4_A RUVB, holliday junction 97.1 0.002 6.9E-08 72.7 11.3 176 117-326 25-221 (334)
214 2bjv_A PSP operon transcriptio 97.1 0.00064 2.2E-08 74.1 6.9 46 118-167 7-52 (265)
215 2kjq_A DNAA-related protein; s 96.9 0.00027 9.4E-09 68.7 2.4 24 144-167 36-59 (149)
216 4fcw_A Chaperone protein CLPB; 96.9 0.0016 5.4E-08 73.1 9.1 65 118-184 18-85 (311)
217 3pxi_A Negative regulator of g 96.9 0.0018 6.3E-08 82.2 10.4 147 117-294 180-338 (758)
218 1r6b_X CLPA protein; AAA+, N-t 96.9 0.0036 1.2E-07 79.6 12.8 154 117-293 186-361 (758)
219 4b4t_J 26S protease regulatory 96.9 0.0024 8.3E-08 71.8 9.6 178 117-320 148-353 (405)
220 3hu3_A Transitional endoplasmi 96.9 0.0017 5.8E-08 76.6 8.8 184 117-326 204-413 (489)
221 2c9o_A RUVB-like 1; hexameric 96.9 0.0016 5.4E-08 77.0 8.5 50 117-167 37-86 (456)
222 1ojl_A Transcriptional regulat 96.9 0.0015 5E-08 72.4 7.7 46 117-166 2-47 (304)
223 4b4t_K 26S protease regulatory 96.8 0.0012 4E-08 75.7 6.6 50 117-166 172-228 (428)
224 1ofh_A ATP-dependent HSL prote 96.8 0.0042 1.4E-07 69.5 10.8 50 117-166 15-72 (310)
225 1lv7_A FTSH; alpha/beta domain 96.7 0.0086 3E-07 64.7 12.0 157 117-294 12-195 (257)
226 2r62_A Cell division protease 96.7 0.00069 2.4E-08 74.1 3.1 50 117-166 11-66 (268)
227 4b4t_L 26S protease subunit RP 96.6 0.0048 1.6E-07 70.8 9.4 178 117-320 181-386 (437)
228 4b4t_H 26S protease regulatory 96.5 0.0066 2.2E-07 69.3 9.9 178 117-320 209-414 (467)
229 3pxi_A Negative regulator of g 96.5 0.0031 1.1E-07 80.1 7.8 155 117-293 491-674 (758)
230 2cvh_A DNA repair and recombin 96.5 0.0079 2.7E-07 63.2 9.8 85 143-233 19-114 (220)
231 2ce7_A Cell division protein F 96.4 0.0068 2.3E-07 70.8 9.3 179 117-321 16-221 (476)
232 4b4t_I 26S protease regulatory 96.4 0.0063 2.2E-07 68.6 8.6 178 117-320 182-387 (437)
233 4b4t_M 26S protease regulatory 96.4 0.0033 1.1E-07 72.0 6.5 178 117-320 181-386 (434)
234 2qgz_A Helicase loader, putati 96.3 0.0019 6.4E-08 71.6 3.8 56 122-182 133-189 (308)
235 3m6a_A ATP-dependent protease 96.3 0.0043 1.5E-07 74.7 7.1 50 117-166 81-130 (543)
236 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0018 6.3E-08 70.0 3.3 67 144-233 123-191 (331)
237 2r44_A Uncharacterized protein 96.2 0.0028 9.5E-08 71.7 4.7 41 118-166 28-68 (331)
238 3qfl_A MLA10; coiled-coil, (CC 95.8 0.0017 6E-08 59.1 0.2 20 1-20 64-83 (115)
239 3cf2_A TER ATPase, transitiona 95.7 0.038 1.3E-06 68.5 11.9 179 117-321 204-407 (806)
240 3rfe_A Platelet glycoprotein I 95.7 0.01 3.6E-07 55.7 5.3 53 533-587 11-66 (130)
241 1qvr_A CLPB protein; coiled co 95.7 0.011 3.6E-07 76.1 7.0 50 117-166 558-610 (854)
242 1r6b_X CLPA protein; AAA+, N-t 95.4 0.0088 3E-07 76.1 5.0 50 117-166 458-510 (758)
243 3hr8_A Protein RECA; alpha and 95.3 0.021 7.1E-07 63.8 6.9 84 143-233 60-148 (356)
244 1xp8_A RECA protein, recombina 95.1 0.042 1.4E-06 61.9 8.7 84 143-233 73-161 (366)
245 2b8t_A Thymidine kinase; deoxy 95.0 0.0082 2.8E-07 62.2 2.4 113 144-264 12-126 (223)
246 1v5w_A DMC1, meiotic recombina 95.0 0.049 1.7E-06 61.2 9.0 58 142-200 120-181 (343)
247 3io5_A Recombination and repai 95.0 0.062 2.1E-06 57.9 8.8 81 146-233 30-120 (333)
248 2zr9_A Protein RECA, recombina 94.9 0.053 1.8E-06 60.9 8.7 84 143-233 60-148 (349)
249 2dhr_A FTSH; AAA+ protein, hex 94.8 0.09 3.1E-06 61.7 10.7 176 116-321 30-236 (499)
250 1odf_A YGR205W, hypothetical 3 94.8 0.1 3.5E-06 56.8 10.4 82 142-223 29-117 (290)
251 1rz3_A Hypothetical protein rb 94.8 0.027 9.2E-07 58.0 5.5 43 121-166 2-44 (201)
252 1u94_A RECA protein, recombina 94.7 0.044 1.5E-06 61.5 7.5 84 143-233 62-150 (356)
253 2x8a_A Nuclear valosin-contain 94.7 0.06 2.1E-06 58.3 8.3 50 117-166 10-66 (274)
254 1n0w_A DNA repair protein RAD5 94.7 0.043 1.5E-06 58.6 7.1 90 143-233 23-128 (243)
255 2z43_A DNA repair and recombin 94.6 0.058 2E-06 60.2 8.1 90 143-233 106-212 (324)
256 1g5t_A COB(I)alamin adenosyltr 94.5 0.013 4.5E-07 58.5 2.3 117 146-264 30-163 (196)
257 1pgv_A TMD-1, tropomodulin TMD 94.5 0.0086 2.9E-07 60.2 0.9 35 1139-1173 42-81 (197)
258 3t15_A Ribulose bisphosphate c 94.2 0.046 1.6E-06 60.0 5.9 25 143-167 35-59 (293)
259 1jr3_D DNA polymerase III, del 93.9 0.16 5.5E-06 57.3 10.1 156 144-326 18-183 (343)
260 2px0_A Flagellar biosynthesis 93.7 0.1 3.5E-06 57.0 7.4 87 143-233 104-191 (296)
261 2i1q_A DNA repair and recombin 93.6 0.077 2.6E-06 59.3 6.6 90 143-233 97-213 (322)
262 3c8u_A Fructokinase; YP_612366 93.6 0.049 1.7E-06 56.4 4.7 39 124-166 6-44 (208)
263 1pgv_A TMD-1, tropomodulin TMD 93.5 0.018 6.1E-07 57.9 1.0 92 1153-1244 32-136 (197)
264 1ypw_A Transitional endoplasmi 93.4 0.066 2.2E-06 67.7 6.2 52 116-167 203-261 (806)
265 1gvn_B Zeta; postsegregational 93.2 0.074 2.5E-06 58.0 5.4 42 124-166 14-55 (287)
266 1qhx_A CPT, protein (chloramph 93.1 0.037 1.3E-06 55.6 2.7 22 145-166 4-25 (178)
267 4a74_A DNA repair and recombin 93.1 0.18 6.1E-06 53.1 8.1 46 143-188 24-73 (231)
268 3bh0_A DNAB-like replicative h 93.1 0.22 7.4E-06 55.2 9.0 52 143-198 67-118 (315)
269 1zp6_A Hypothetical protein AT 93.0 0.051 1.7E-06 55.4 3.5 24 144-167 9-32 (191)
270 3tqc_A Pantothenate kinase; bi 93.0 0.19 6.5E-06 55.2 8.2 102 120-224 70-171 (321)
271 3nbx_X ATPase RAVA; AAA+ ATPas 93.0 0.059 2E-06 63.4 4.4 41 119-167 24-64 (500)
272 3lw7_A Adenylate kinase relate 92.9 0.047 1.6E-06 54.8 3.1 20 145-164 2-21 (179)
273 2p5t_B PEZT; postsegregational 92.8 0.081 2.8E-06 56.6 5.0 43 123-166 12-54 (253)
274 3rfe_A Platelet glycoprotein I 92.8 0.13 4.3E-06 48.2 5.6 35 1187-1221 32-66 (130)
275 3kb2_A SPBC2 prophage-derived 92.8 0.045 1.5E-06 54.6 2.7 22 145-166 2-23 (173)
276 1sky_E F1-ATPase, F1-ATP synth 92.7 0.097 3.3E-06 60.1 5.6 51 145-196 152-203 (473)
277 3ice_A Transcription terminati 92.7 0.11 3.8E-06 57.4 5.7 42 144-186 174-216 (422)
278 1pzn_A RAD51, DNA repair and r 92.7 0.15 5E-06 57.4 6.9 48 143-190 130-181 (349)
279 3vaa_A Shikimate kinase, SK; s 92.6 0.055 1.9E-06 55.5 3.1 23 144-166 25-47 (199)
280 2ga8_A Hypothetical 39.9 kDa p 92.6 0.1 3.6E-06 57.4 5.4 45 120-166 2-46 (359)
281 1ly1_A Polynucleotide kinase; 92.5 0.058 2E-06 54.3 3.1 22 145-166 3-24 (181)
282 3uie_A Adenylyl-sulfate kinase 92.5 0.071 2.4E-06 54.7 3.8 23 144-166 25-47 (200)
283 2w0m_A SSO2452; RECA, SSPF, un 92.4 0.21 7.2E-06 52.6 7.5 38 144-183 23-60 (235)
284 1kgd_A CASK, peripheral plasma 92.4 0.066 2.3E-06 53.8 3.2 23 144-166 5-27 (180)
285 3lda_A DNA repair protein RAD5 92.3 0.25 8.6E-06 56.2 8.3 57 143-200 177-237 (400)
286 3trf_A Shikimate kinase, SK; a 92.1 0.061 2.1E-06 54.4 2.7 22 145-166 6-27 (185)
287 1kag_A SKI, shikimate kinase I 92.0 0.061 2.1E-06 53.7 2.6 22 145-166 5-26 (173)
288 2orw_A Thymidine kinase; TMTK, 92.0 0.02 6.7E-07 57.8 -1.2 22 145-166 4-25 (184)
289 1vma_A Cell division protein F 92.0 0.25 8.6E-06 54.0 7.5 109 122-233 80-195 (306)
290 1knq_A Gluconate kinase; ALFA/ 92.0 0.096 3.3E-06 52.4 3.9 23 144-166 8-30 (175)
291 3dm5_A SRP54, signal recogniti 92.0 0.81 2.8E-05 52.4 11.9 24 143-166 99-122 (443)
292 4gp7_A Metallophosphoesterase; 91.9 0.076 2.6E-06 52.8 3.1 23 144-166 9-31 (171)
293 4eun_A Thermoresistant glucoki 91.8 0.079 2.7E-06 54.4 3.1 23 144-166 29-51 (200)
294 2rhm_A Putative kinase; P-loop 91.8 0.088 3E-06 53.6 3.4 23 144-166 5-27 (193)
295 3hws_A ATP-dependent CLP prote 91.6 0.1 3.5E-06 59.4 4.1 49 118-166 16-73 (363)
296 1uj2_A Uridine-cytidine kinase 91.5 0.089 3E-06 56.3 3.3 24 143-166 21-44 (252)
297 3tau_A Guanylate kinase, GMP k 91.5 0.091 3.1E-06 54.3 3.2 24 144-167 8-31 (208)
298 2bdt_A BH3686; alpha-beta prot 91.5 0.097 3.3E-06 53.1 3.4 22 145-166 3-24 (189)
299 4a1f_A DNAB helicase, replicat 91.5 0.34 1.2E-05 53.5 7.9 52 144-199 46-97 (338)
300 3t61_A Gluconokinase; PSI-biol 91.4 0.071 2.4E-06 54.9 2.3 23 144-166 18-40 (202)
301 1nks_A Adenylate kinase; therm 91.4 0.085 2.9E-06 53.8 2.9 22 145-166 2-23 (194)
302 2ffh_A Protein (FFH); SRP54, s 91.4 0.37 1.3E-05 55.1 8.4 24 143-166 97-120 (425)
303 1zuh_A Shikimate kinase; alpha 91.4 0.083 2.8E-06 52.4 2.7 23 144-166 7-29 (168)
304 1y63_A LMAJ004144AAA protein; 91.3 0.1 3.5E-06 52.7 3.3 23 144-166 10-32 (184)
305 3tr0_A Guanylate kinase, GMP k 91.3 0.097 3.3E-06 54.0 3.2 22 145-166 8-29 (205)
306 3iij_A Coilin-interacting nucl 91.3 0.078 2.7E-06 53.3 2.4 23 144-166 11-33 (180)
307 2qt1_A Nicotinamide riboside k 91.3 0.11 3.7E-06 53.7 3.6 24 143-166 20-43 (207)
308 1kht_A Adenylate kinase; phosp 91.1 0.094 3.2E-06 53.4 2.9 22 145-166 4-25 (192)
309 2ze6_A Isopentenyl transferase 91.1 0.11 3.7E-06 55.5 3.4 22 145-166 2-23 (253)
310 2qor_A Guanylate kinase; phosp 91.1 0.082 2.8E-06 54.5 2.4 24 143-166 11-34 (204)
311 1ye8_A Protein THEP1, hypothet 91.1 0.11 3.7E-06 51.9 3.2 22 146-167 2-23 (178)
312 3a00_A Guanylate kinase, GMP k 91.1 0.085 2.9E-06 53.4 2.4 22 145-166 2-23 (186)
313 3umf_A Adenylate kinase; rossm 91.1 0.11 3.9E-06 53.3 3.4 25 142-166 27-51 (217)
314 3fwy_A Light-independent proto 91.0 0.11 3.9E-06 57.1 3.5 41 142-184 46-86 (314)
315 1ex7_A Guanylate kinase; subst 91.0 0.063 2.1E-06 53.8 1.2 22 145-166 2-23 (186)
316 1ukz_A Uridylate kinase; trans 91.0 0.13 4.3E-06 53.0 3.7 24 143-166 14-37 (203)
317 3asz_A Uridine kinase; cytidin 90.9 0.12 3.9E-06 53.7 3.3 24 143-166 5-28 (211)
318 2j41_A Guanylate kinase; GMP, 90.9 0.11 3.9E-06 53.5 3.2 24 144-167 6-29 (207)
319 2yvu_A Probable adenylyl-sulfa 90.9 0.15 5.1E-06 51.5 4.0 25 143-167 12-36 (186)
320 1uf9_A TT1252 protein; P-loop, 90.9 0.11 3.8E-06 53.4 3.1 24 143-166 7-30 (203)
321 1jjv_A Dephospho-COA kinase; P 90.8 0.13 4.3E-06 53.1 3.5 22 145-166 3-24 (206)
322 2iyv_A Shikimate kinase, SK; t 90.8 0.079 2.7E-06 53.5 1.9 22 145-166 3-24 (184)
323 2xxa_A Signal recognition part 90.8 0.48 1.6E-05 54.6 8.6 43 124-166 77-122 (433)
324 2jaq_A Deoxyguanosine kinase; 90.8 0.1 3.6E-06 53.7 2.9 21 146-166 2-22 (205)
325 1htw_A HI0065; nucleotide-bind 90.7 0.15 5.1E-06 49.6 3.7 23 144-166 33-55 (158)
326 1via_A Shikimate kinase; struc 90.7 0.1 3.5E-06 52.1 2.6 21 146-166 6-26 (175)
327 1tev_A UMP-CMP kinase; ploop, 90.7 0.12 4.1E-06 52.8 3.1 22 145-166 4-25 (196)
328 1lvg_A Guanylate kinase, GMP k 90.6 0.098 3.3E-06 53.5 2.4 22 145-166 5-26 (198)
329 2c95_A Adenylate kinase 1; tra 90.6 0.11 3.7E-06 53.2 2.7 23 144-166 9-31 (196)
330 3ney_A 55 kDa erythrocyte memb 90.6 0.13 4.4E-06 51.9 3.1 24 143-166 18-41 (197)
331 3kl4_A SRP54, signal recogniti 90.6 1.1 3.8E-05 51.3 11.2 24 143-166 96-119 (433)
332 1xjc_A MOBB protein homolog; s 90.6 0.13 4.3E-06 50.4 3.0 23 144-166 4-26 (169)
333 3a4m_A L-seryl-tRNA(SEC) kinas 90.6 0.13 4.6E-06 55.1 3.5 23 144-166 4-26 (260)
334 2if2_A Dephospho-COA kinase; a 90.5 0.12 4.1E-06 53.2 2.9 21 146-166 3-23 (204)
335 1cke_A CK, MSSA, protein (cyti 90.4 0.13 4.3E-06 54.1 3.2 22 145-166 6-27 (227)
336 3cm0_A Adenylate kinase; ATP-b 90.4 0.15 5E-06 51.6 3.5 22 145-166 5-26 (186)
337 2pez_A Bifunctional 3'-phospho 90.4 0.15 5.2E-06 51.1 3.5 23 144-166 5-27 (179)
338 1e6c_A Shikimate kinase; phosp 90.3 0.1 3.4E-06 52.1 2.1 22 145-166 3-24 (173)
339 3aez_A Pantothenate kinase; tr 90.3 0.15 5.1E-06 56.1 3.7 24 143-166 89-112 (312)
340 2cdn_A Adenylate kinase; phosp 90.3 0.14 4.8E-06 52.5 3.3 23 144-166 20-42 (201)
341 1qf9_A UMP/CMP kinase, protein 90.2 0.15 5.2E-06 51.8 3.5 23 144-166 6-28 (194)
342 2grj_A Dephospho-COA kinase; T 90.2 0.14 4.9E-06 51.7 3.1 24 143-166 11-34 (192)
343 2pt5_A Shikimate kinase, SK; a 90.2 0.13 4.5E-06 50.9 2.9 21 146-166 2-22 (168)
344 1ixz_A ATP-dependent metallopr 90.1 0.17 5.9E-06 54.2 3.9 51 117-167 16-72 (254)
345 1g8p_A Magnesium-chelatase 38 90.1 0.11 3.9E-06 58.8 2.6 44 117-166 24-67 (350)
346 1znw_A Guanylate kinase, GMP k 90.0 0.15 5E-06 52.7 3.1 23 144-166 20-42 (207)
347 2plr_A DTMP kinase, probable t 90.0 0.15 5.2E-06 52.8 3.2 22 145-166 5-26 (213)
348 2bbw_A Adenylate kinase 4, AK4 89.9 0.15 5E-06 54.4 3.2 23 144-166 27-49 (246)
349 2jeo_A Uridine-cytidine kinase 89.9 0.17 6E-06 53.7 3.7 23 144-166 25-47 (245)
350 3l0o_A Transcription terminati 89.9 1 3.4E-05 49.9 9.5 37 126-167 162-198 (427)
351 1ls1_A Signal recognition part 89.8 0.56 1.9E-05 51.1 7.7 24 143-166 97-120 (295)
352 3tlx_A Adenylate kinase 2; str 89.8 0.23 7.7E-06 52.7 4.5 23 144-166 29-51 (243)
353 2bwj_A Adenylate kinase 5; pho 89.8 0.14 4.6E-06 52.5 2.7 22 145-166 13-34 (199)
354 1tue_A Replication protein E1; 89.8 0.21 7.3E-06 50.0 3.8 38 124-166 43-80 (212)
355 2hf9_A Probable hydrogenase ni 89.7 0.18 6E-06 52.9 3.6 25 143-167 37-61 (226)
356 1z6g_A Guanylate kinase; struc 89.7 0.13 4.6E-06 53.4 2.5 23 144-166 23-45 (218)
357 3e70_C DPA, signal recognition 89.7 0.74 2.5E-05 50.8 8.6 25 142-166 127-151 (328)
358 1rj9_A FTSY, signal recognitio 89.7 0.17 5.8E-06 55.4 3.4 24 143-166 101-124 (304)
359 1j8m_F SRP54, signal recogniti 89.7 0.59 2E-05 50.9 7.7 88 144-233 98-189 (297)
360 2z0h_A DTMP kinase, thymidylat 89.6 0.33 1.1E-05 49.4 5.5 21 146-166 2-22 (197)
361 4e22_A Cytidylate kinase; P-lo 89.6 0.16 5.6E-06 54.1 3.2 23 144-166 27-49 (252)
362 1s96_A Guanylate kinase, GMP k 89.6 0.16 5.6E-06 52.5 3.1 24 143-166 15-38 (219)
363 2vli_A Antibiotic resistance p 89.6 0.11 3.8E-06 52.3 1.8 22 145-166 6-27 (183)
364 2pbr_A DTMP kinase, thymidylat 89.6 0.15 5.3E-06 51.9 2.9 21 146-166 2-22 (195)
365 1q57_A DNA primase/helicase; d 89.5 0.75 2.6E-05 54.8 9.2 54 143-199 241-294 (503)
366 1um8_A ATP-dependent CLP prote 89.4 0.21 7E-06 57.3 4.1 22 145-166 73-94 (376)
367 1aky_A Adenylate kinase; ATP:A 89.2 0.17 5.7E-06 52.9 2.8 22 145-166 5-26 (220)
368 1fx0_B ATP synthase beta chain 89.2 0.75 2.6E-05 52.9 8.3 54 144-198 165-219 (498)
369 1m7g_A Adenylylsulfate kinase; 89.1 0.21 7E-06 51.7 3.4 23 144-166 25-47 (211)
370 3hjn_A DTMP kinase, thymidylat 89.0 0.51 1.8E-05 47.9 6.2 49 146-196 2-50 (197)
371 2f6r_A COA synthase, bifunctio 89.0 0.21 7.2E-06 54.2 3.6 23 143-165 74-96 (281)
372 2r6a_A DNAB helicase, replicat 89.0 0.88 3E-05 53.3 9.1 51 143-196 202-252 (454)
373 2j37_W Signal recognition part 88.9 1.8 6E-05 50.8 11.4 25 142-166 99-123 (504)
374 2ck3_D ATP synthase subunit be 88.9 1.1 3.8E-05 51.2 9.4 54 144-198 153-207 (482)
375 1zu4_A FTSY; GTPase, signal re 88.9 0.57 2E-05 51.6 7.0 25 142-166 103-127 (320)
376 2q6t_A DNAB replication FORK h 88.8 0.79 2.7E-05 53.5 8.6 54 143-199 199-252 (444)
377 2f1r_A Molybdopterin-guanine d 88.8 0.14 4.9E-06 50.4 1.9 22 145-166 3-24 (171)
378 1nn5_A Similar to deoxythymidy 88.8 0.18 6.1E-06 52.4 2.8 23 144-166 9-31 (215)
379 2wwf_A Thymidilate kinase, put 88.8 0.17 5.9E-06 52.4 2.6 23 144-166 10-32 (212)
380 3tif_A Uncharacterized ABC tra 88.7 0.31 1E-05 51.2 4.4 23 144-166 31-53 (235)
381 2i3b_A HCR-ntpase, human cance 88.7 0.19 6.4E-06 50.7 2.6 22 146-167 3-24 (189)
382 3fb4_A Adenylate kinase; psych 88.6 0.2 6.7E-06 52.1 2.9 21 146-166 2-22 (216)
383 3nwj_A ATSK2; P loop, shikimat 88.5 0.18 6E-06 53.4 2.4 22 145-166 49-70 (250)
384 1sq5_A Pantothenate kinase; P- 88.5 0.42 1.4E-05 52.7 5.6 24 143-166 79-102 (308)
385 1zd8_A GTP:AMP phosphotransfer 88.5 0.21 7.1E-06 52.4 2.9 22 145-166 8-29 (227)
386 2wsm_A Hydrogenase expression/ 88.4 0.22 7.6E-06 51.9 3.2 41 121-167 13-53 (221)
387 3jvv_A Twitching mobility prot 88.4 0.093 3.2E-06 58.8 0.2 112 145-268 124-235 (356)
388 3dl0_A Adenylate kinase; phosp 88.4 0.21 7.2E-06 51.9 2.9 21 146-166 2-22 (216)
389 3b9q_A Chloroplast SRP recepto 88.3 0.25 8.7E-06 54.0 3.6 24 143-166 99-122 (302)
390 3be4_A Adenylate kinase; malar 88.3 0.17 6E-06 52.5 2.2 22 145-166 6-27 (217)
391 1gtv_A TMK, thymidylate kinase 88.2 0.12 4.2E-06 53.6 1.0 21 146-166 2-22 (214)
392 1vht_A Dephospho-COA kinase; s 88.2 0.27 9.4E-06 51.1 3.7 22 145-166 5-26 (218)
393 2v54_A DTMP kinase, thymidylat 88.2 0.22 7.5E-06 51.2 2.9 23 145-167 5-27 (204)
394 3cmu_A Protein RECA, recombina 88.2 0.3 1E-05 66.2 4.8 84 143-233 1426-1514(2050)
395 1zak_A Adenylate kinase; ATP:A 88.1 0.18 6.1E-06 52.7 2.2 22 145-166 6-27 (222)
396 3a8t_A Adenylate isopentenyltr 88.1 0.29 9.8E-06 53.6 3.8 24 144-167 40-63 (339)
397 2onk_A Molybdate/tungstate ABC 88.1 0.24 8.2E-06 52.1 3.1 22 145-166 25-46 (240)
398 3d3q_A TRNA delta(2)-isopenten 88.0 0.26 8.9E-06 54.2 3.4 22 145-166 8-29 (340)
399 1b0u_A Histidine permease; ABC 88.0 0.35 1.2E-05 51.7 4.4 23 144-166 32-54 (262)
400 3gfo_A Cobalt import ATP-bindi 88.0 0.34 1.2E-05 52.0 4.3 23 144-166 34-56 (275)
401 3r20_A Cytidylate kinase; stru 87.9 0.26 8.8E-06 51.2 3.2 22 145-166 10-31 (233)
402 3upu_A ATP-dependent DNA helic 87.9 0.32 1.1E-05 57.2 4.4 22 146-167 47-68 (459)
403 1np6_A Molybdopterin-guanine d 87.9 0.26 9E-06 48.7 3.1 24 143-166 5-28 (174)
404 1g41_A Heat shock protein HSLU 87.9 0.27 9.4E-06 56.3 3.6 50 117-166 15-72 (444)
405 2ged_A SR-beta, signal recogni 87.8 0.35 1.2E-05 49.0 4.2 25 143-167 47-71 (193)
406 3bgw_A DNAB-like replicative h 87.7 1.4 4.9E-05 51.0 9.7 51 143-197 196-246 (444)
407 2ehv_A Hypothetical protein PH 87.7 0.25 8.7E-06 52.7 3.2 23 144-166 30-52 (251)
408 4g1u_C Hemin import ATP-bindin 87.7 0.41 1.4E-05 51.2 4.7 23 144-166 37-59 (266)
409 3ake_A Cytidylate kinase; CMP 87.7 0.25 8.4E-06 51.0 2.9 21 146-166 4-24 (208)
410 2yhs_A FTSY, cell division pro 87.6 0.57 2E-05 54.1 6.0 43 142-187 291-333 (503)
411 2pcj_A ABC transporter, lipopr 87.5 0.26 8.8E-06 51.3 2.9 22 145-166 31-52 (224)
412 3p32_A Probable GTPase RV1496/ 87.5 0.5 1.7E-05 53.3 5.5 37 126-166 65-101 (355)
413 2cbz_A Multidrug resistance-as 87.5 0.29 9.9E-06 51.5 3.3 24 144-167 31-54 (237)
414 2qe7_A ATP synthase subunit al 87.4 0.51 1.7E-05 54.3 5.4 84 144-233 162-263 (502)
415 3lnc_A Guanylate kinase, GMP k 87.2 0.2 7E-06 52.6 2.0 23 144-166 27-50 (231)
416 3crm_A TRNA delta(2)-isopenten 87.2 0.29 9.8E-06 53.5 3.1 22 145-166 6-27 (323)
417 3sr0_A Adenylate kinase; phosp 87.1 0.28 9.7E-06 50.1 2.9 21 146-166 2-22 (206)
418 2xb4_A Adenylate kinase; ATP-b 87.1 0.27 9.4E-06 51.3 2.9 21 146-166 2-22 (223)
419 2ff7_A Alpha-hemolysin translo 87.1 0.42 1.4E-05 50.5 4.3 22 145-166 36-57 (247)
420 3b85_A Phosphate starvation-in 87.1 0.24 8.2E-06 50.8 2.3 22 145-166 23-44 (208)
421 2qmh_A HPR kinase/phosphorylas 87.1 0.33 1.1E-05 48.3 3.2 23 145-167 35-57 (205)
422 1vpl_A ABC transporter, ATP-bi 87.0 0.43 1.5E-05 50.6 4.4 23 144-166 41-63 (256)
423 3exa_A TRNA delta(2)-isopenten 87.0 0.31 1.1E-05 52.5 3.2 22 145-166 4-25 (322)
424 1mv5_A LMRA, multidrug resista 87.0 0.36 1.2E-05 51.0 3.7 23 144-166 28-50 (243)
425 2olj_A Amino acid ABC transpor 86.9 0.32 1.1E-05 51.9 3.3 23 144-166 50-72 (263)
426 1yrb_A ATP(GTP)binding protein 86.9 0.36 1.2E-05 51.9 3.8 25 142-166 12-36 (262)
427 1cr0_A DNA primase/helicase; R 86.9 0.69 2.4E-05 50.7 6.1 50 144-197 35-85 (296)
428 4eaq_A DTMP kinase, thymidylat 86.9 0.52 1.8E-05 49.2 4.8 25 143-167 25-49 (229)
429 2ixe_A Antigen peptide transpo 86.9 0.45 1.5E-05 51.1 4.4 23 144-166 45-67 (271)
430 3k1j_A LON protease, ATP-depen 86.9 0.32 1.1E-05 59.5 3.7 43 117-167 41-83 (604)
431 2og2_A Putative signal recogni 86.8 0.35 1.2E-05 54.0 3.6 24 143-166 156-179 (359)
432 1e4v_A Adenylate kinase; trans 86.8 0.28 9.5E-06 50.8 2.7 21 146-166 2-22 (214)
433 3end_A Light-independent proto 86.8 0.55 1.9E-05 51.8 5.3 42 142-185 39-80 (307)
434 3cf2_A TER ATPase, transitiona 86.7 0.78 2.7E-05 56.9 7.0 52 116-167 476-534 (806)
435 1sgw_A Putative ABC transporte 86.7 0.28 9.6E-06 50.4 2.6 22 145-166 36-57 (214)
436 1iy2_A ATP-dependent metallopr 86.6 0.28 9.4E-06 53.4 2.6 52 116-167 39-96 (278)
437 1ji0_A ABC transporter; ATP bi 86.5 0.34 1.2E-05 51.1 3.2 23 144-166 32-54 (240)
438 3foz_A TRNA delta(2)-isopenten 86.5 0.38 1.3E-05 51.8 3.5 24 143-166 9-32 (316)
439 2zej_A Dardarin, leucine-rich 86.5 0.33 1.1E-05 48.8 3.0 22 146-167 4-25 (184)
440 1g6h_A High-affinity branched- 86.4 0.35 1.2E-05 51.6 3.2 23 144-166 33-55 (257)
441 1ak2_A Adenylate kinase isoenz 86.4 0.33 1.1E-05 51.1 3.0 22 145-166 17-38 (233)
442 2pze_A Cystic fibrosis transme 86.3 0.35 1.2E-05 50.5 3.2 23 144-166 34-56 (229)
443 2wji_A Ferrous iron transport 86.3 0.41 1.4E-05 47.1 3.5 23 145-167 4-26 (165)
444 2ghi_A Transport protein; mult 86.2 0.36 1.2E-05 51.5 3.3 23 144-166 46-68 (260)
445 2v9p_A Replication protein E1; 86.2 0.35 1.2E-05 52.6 3.1 24 143-166 125-148 (305)
446 3e1s_A Exodeoxyribonuclease V, 86.2 0.92 3.1E-05 54.6 7.1 104 145-262 205-314 (574)
447 2d2e_A SUFC protein; ABC-ATPas 86.1 0.36 1.2E-05 51.2 3.2 22 145-166 30-51 (250)
448 2vp4_A Deoxynucleoside kinase; 86.1 0.42 1.4E-05 50.1 3.6 25 142-166 18-42 (230)
449 1a7j_A Phosphoribulokinase; tr 86.1 0.2 6.7E-06 54.6 1.1 23 144-166 5-27 (290)
450 2zu0_C Probable ATP-dependent 86.0 0.38 1.3E-05 51.6 3.3 23 144-166 46-68 (267)
451 2qi9_C Vitamin B12 import ATP- 85.8 0.38 1.3E-05 50.8 3.2 22 145-166 27-48 (249)
452 3zvl_A Bifunctional polynucleo 85.8 0.38 1.3E-05 55.5 3.4 24 143-166 257-280 (416)
453 1ltq_A Polynucleotide kinase; 85.8 0.36 1.2E-05 53.2 3.1 22 145-166 3-24 (301)
454 1oix_A RAS-related protein RAB 85.7 0.38 1.3E-05 48.8 2.9 24 144-167 29-52 (191)
455 2yz2_A Putative ABC transporte 85.6 0.41 1.4E-05 51.4 3.3 23 144-166 33-55 (266)
456 2r9v_A ATP synthase subunit al 85.6 0.83 2.8E-05 52.6 5.8 84 144-233 175-276 (515)
457 2r8r_A Sensor protein; KDPD, P 85.5 0.76 2.6E-05 47.0 5.0 37 146-184 8-44 (228)
458 2dr3_A UPF0273 protein PH0284; 85.5 0.46 1.6E-05 50.4 3.7 39 144-184 23-61 (247)
459 2nq2_C Hypothetical ABC transp 85.5 0.41 1.4E-05 50.8 3.2 22 145-166 32-53 (253)
460 2eyu_A Twitching motility prot 85.4 0.48 1.6E-05 50.6 3.7 23 144-166 25-47 (261)
461 3gqb_B V-type ATP synthase bet 85.4 0.3 1E-05 55.5 2.1 90 144-233 147-260 (464)
462 2ihy_A ABC transporter, ATP-bi 85.3 0.41 1.4E-05 51.6 3.2 23 144-166 47-69 (279)
463 3vr4_D V-type sodium ATPase su 85.3 0.48 1.6E-05 53.8 3.7 87 145-233 152-257 (465)
464 2dyk_A GTP-binding protein; GT 85.0 0.48 1.7E-05 46.1 3.3 23 145-167 2-24 (161)
465 4edh_A DTMP kinase, thymidylat 84.9 1.1 3.7E-05 46.0 6.0 24 144-167 6-29 (213)
466 3nh6_A ATP-binding cassette SU 84.9 0.41 1.4E-05 52.2 2.9 23 144-166 80-102 (306)
467 2f9l_A RAB11B, member RAS onco 84.9 0.43 1.5E-05 48.7 2.9 24 144-167 5-28 (199)
468 1svm_A Large T antigen; AAA+ f 84.7 0.45 1.6E-05 53.6 3.2 24 143-166 168-191 (377)
469 1q3t_A Cytidylate kinase; nucl 84.7 0.48 1.6E-05 49.9 3.2 24 143-166 15-38 (236)
470 3cmu_A Protein RECA, recombina 84.5 1.2 4.2E-05 60.5 7.6 85 143-234 382-471 (2050)
471 2v3c_C SRP54, signal recogniti 84.5 0.58 2E-05 53.9 4.1 25 143-167 98-122 (432)
472 1nlf_A Regulatory protein REPA 84.2 0.46 1.6E-05 51.6 3.0 23 144-166 30-52 (279)
473 3cmw_A Protein RECA, recombina 84.2 1.2 4E-05 59.9 7.2 82 145-233 384-470 (1706)
474 1cp2_A CP2, nitrogenase iron p 84.2 0.81 2.8E-05 49.3 4.9 39 145-185 2-40 (269)
475 2pjz_A Hypothetical protein ST 84.0 0.52 1.8E-05 50.2 3.2 22 145-166 31-52 (263)
476 2wjg_A FEOB, ferrous iron tran 83.9 0.62 2.1E-05 46.9 3.6 24 144-167 7-30 (188)
477 2lkc_A Translation initiation 83.7 0.72 2.5E-05 45.8 4.0 25 143-167 7-31 (178)
478 2nzj_A GTP-binding protein REM 83.6 0.58 2E-05 46.4 3.2 23 145-167 5-27 (175)
479 3sop_A Neuronal-specific septi 83.5 0.53 1.8E-05 50.5 3.0 21 146-166 4-24 (270)
480 2bbs_A Cystic fibrosis transme 83.3 0.55 1.9E-05 50.8 3.1 23 144-166 64-86 (290)
481 1fx0_A ATP synthase alpha chai 83.2 0.83 2.8E-05 52.6 4.5 84 144-233 163-264 (507)
482 2ce2_X GTPase HRAS; signaling 83.1 0.51 1.7E-05 46.1 2.5 22 146-167 5-26 (166)
483 2ocp_A DGK, deoxyguanosine kin 83.1 0.57 1.9E-05 49.5 3.0 22 145-166 3-24 (241)
484 3ld9_A DTMP kinase, thymidylat 82.9 1.1 3.9E-05 46.0 5.1 25 143-167 20-44 (223)
485 3mfy_A V-type ATP synthase alp 82.8 2.4 8.3E-05 49.2 8.1 48 144-195 227-275 (588)
486 1u0j_A DNA replication protein 82.7 1 3.5E-05 47.5 4.7 37 126-166 90-126 (267)
487 2afh_E Nitrogenase iron protei 82.7 0.98 3.3E-05 49.3 4.8 39 145-185 3-41 (289)
488 3tui_C Methionine import ATP-b 82.6 0.64 2.2E-05 51.8 3.3 23 144-166 54-76 (366)
489 3q72_A GTP-binding protein RAD 82.6 0.6 2.1E-05 45.7 2.8 22 146-167 4-25 (166)
490 3q85_A GTP-binding protein REM 82.6 0.64 2.2E-05 45.7 3.0 22 145-166 3-24 (169)
491 1z2a_A RAS-related protein RAB 82.6 0.72 2.5E-05 45.2 3.4 23 145-167 6-28 (168)
492 2c61_A A-type ATP synthase non 82.6 0.44 1.5E-05 54.5 2.0 54 144-197 152-208 (469)
493 3eph_A TRNA isopentenyltransfe 82.5 0.63 2.2E-05 52.2 3.2 22 145-166 3-24 (409)
494 2www_A Methylmalonic aciduria 82.5 0.8 2.7E-05 51.3 4.1 24 143-166 73-96 (349)
495 3fvq_A Fe(3+) IONS import ATP- 82.5 0.84 2.9E-05 50.8 4.2 23 144-166 30-52 (359)
496 3con_A GTPase NRAS; structural 82.5 0.62 2.1E-05 47.0 2.9 23 145-167 22-44 (190)
497 3v9p_A DTMP kinase, thymidylat 82.5 1 3.5E-05 46.6 4.6 24 144-167 25-48 (227)
498 2j9r_A Thymidine kinase; TK1, 82.5 0.97 3.3E-05 45.8 4.2 111 144-265 28-139 (214)
499 1nij_A Hypothetical protein YJ 82.3 0.6 2E-05 51.7 2.9 25 143-167 3-27 (318)
500 2gj8_A MNME, tRNA modification 82.3 0.72 2.5E-05 45.6 3.3 23 145-167 5-27 (172)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.7e-49 Score=505.20 Aligned_cols=398 Identities=15% Similarity=0.042 Sum_probs=213.8
Q ss_pred hhccCccceEeecCCCCcccchhhhhhHHHHHhhhccccccEEEeccCCCCCcCcccccC--CCCccEEEeccCCCcccc
Q 035550 935 LQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLS--LSSLREIEIYKCSSLVSF 1012 (1385)
Q Consensus 935 ~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~l~~l~~~~~~--l~~L~~L~L~~~~~l~~~ 1012 (1385)
+..+++|++|++++|.-...++... ..+.++|++|++++|.....+|..+.. +++|++|++++|.....+
T Consensus 339 l~~l~~L~~L~Ls~n~l~~~~p~~l--------~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 410 (768)
T 3rgz_A 339 LLKMRGLKVLDLSFNEFSGELPESL--------TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410 (768)
T ss_dssp HTTCTTCCEEECCSSEEEECCCTTH--------HHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEEC
T ss_pred HhcCCCCCEEeCcCCccCccccHHH--------HhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccccc
Confidence 4556666666666653222222211 111136667777766665555555544 566777777766444344
Q ss_pred cC-ccCccccceEEeecCCCCCCCCcccccCCCCCcceEEeecCCCCcccc-ccCCCCCcceEEeccCCCCccccccccc
Q 035550 1013 PE-VALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEILNIEDCHSLTYIA-AVQLPPSLKQLEIYNCDNIRTLTVEEGI 1090 (1385)
Q Consensus 1013 ~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~L~~l~~~~~~ 1090 (1385)
|. +..+++|+.|++++|...+.+|..+ ..+++|+.|++++|.....++ .+..+++|+.|++++|.....++.
T Consensus 411 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~---- 484 (768)
T 3rgz_A 411 PPTLSNCSELVSLHLSFNYLSGTIPSSL--GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS---- 484 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGG--GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG----
T ss_pred CHHHhcCCCCCEEECcCCcccCcccHHH--hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCH----
Confidence 43 4556666777777666555555544 234566666666666443333 234455666666666542222211
Q ss_pred ccccccccccCCCccEEEeccCCCcccccccCCCchhhhccccCCCCcccceeEEcccCcchhhhhhcCCCCCCcEEeec
Q 035550 1091 QCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPATLESLEVGNLPSSLKSLVVWSCSKLESIAERLDNNTSLETISID 1170 (1385)
Q Consensus 1091 ~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~ 1170 (1385)
....+++|+.|++++|.-. +.+|..+..+ ++|++|++++|.+.+.+|..+.++++|+.|+|+
T Consensus 485 ------~l~~l~~L~~L~L~~N~l~------~~~p~~~~~l------~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 485 ------GLSNCTNLNWISLSNNRLT------GEIPKWIGRL------ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp ------GGGGCTTCCEEECCSSCCC------SCCCGGGGGC------TTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred ------HHhcCCCCCEEEccCCccC------CcCChHHhcC------CCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 0111233333333333211 1122222222 344444444444444444444444444444444
Q ss_pred CCCCccccCCCCCCccCcceEEeccc----------------------cCcccccccCCCCCccceeeccccCCCCCCcc
Q 035550 1171 SCGNLVSFPEGGLPCVKLRMLAITNC----------------------KRLEALPKGLHNLTSLQELTIGIGGALPSLEE 1228 (1385)
Q Consensus 1171 ~n~~l~~~~~~~~~l~~L~~L~L~~n----------------------~~~~~lp~~l~~l~~L~~L~L~~n~~~~~~~~ 1228 (1385)
+|++.+.+|..+..+..+..+.+..+ ...+..+..+..++.++.++++.|...+.+|.
T Consensus 547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~ 626 (768)
T 3rgz_A 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626 (768)
T ss_dssp SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence 44444444443333222222221110 00111122222333444445555666666777
Q ss_pred cCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCCCCcccceeecccccccc
Q 035550 1229 EDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLPASLTSLWIFNFPNLE 1308 (1385)
Q Consensus 1229 ~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 1308 (1385)
.++.+++|++|++++|.+.. ..|..+.++++|+.|+|++|... ..++..+..+++|+.|++++|..-+
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g----~ip~~l~~l~~L~~L~Ls~N~l~--------g~ip~~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSG----YIPKEIGSMPYLFILNLGHNDIS--------GSIPDEVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBS----CCCGGGGGCTTCCEEECCSSCCC--------SCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred hhhccccccEEECcCCcccc----cCCHHHhccccCCEEeCcCCccC--------CCCChHHhCCCCCCEEECCCCcccC
Confidence 77778888888888887442 33456788888888888886421 1223344567888899998876666
Q ss_pred cccccCCCCCCCCeEeccCCCCCCCCCCCCCCCccceeeecCChhhH----HhhhcCCCCCCcccCCCCeEE
Q 035550 1309 RLSSSIVDLQNLTELKLHNCPKLKYFPEKGLPSSLLQLQIVGCPLMK----EKCRKDGGQYWDLLTHIPLVE 1376 (1385)
Q Consensus 1309 ~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~~l~----~~~~~~~~~~~~~i~~~~~~~ 1376 (1385)
.+|..+.++++|++|+|++|+--..+|..+.+.++....+.+||.|- ..|....+++|++|+|+|...
T Consensus 695 ~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 695 RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp CCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred cCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 89999999999999999998766788988888888888888877542 268889999999999999753
No 2
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=6.1e-46 Score=455.22 Aligned_cols=317 Identities=18% Similarity=0.238 Sum_probs=257.9
Q ss_pred eechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhc--CccccccCCcEEEEEeCCCC--CHHHHHHHH
Q 035550 120 YGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYN--DKQVQDHFDLKAWTCVSDDF--DVIRLTKSI 195 (1385)
Q Consensus 120 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i 195 (1385)
|||++++++|.++|... .+...++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.. +...+++.|
T Consensus 131 ~GR~~~~~~l~~~L~~~---~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc---cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 59999999999999654 234579999999999999999999998 67889999999999999985 899999999
Q ss_pred HHHhcCCCC------CCccCHHHHHHHHHhHcCCC-eEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchhHhh
Q 035550 196 LLSIASDQI------VDNHDLNKLQEELKKKLSPK-KFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQGVAA 268 (1385)
Q Consensus 196 ~~~~~~~~~------~~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 268 (1385)
+.+++.... ....+.+.+...+++.|+++ ||||||||||+.+...|.. .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 999986521 12234567889999999996 9999999998853222332 27999999999999998
Q ss_pred hhC-CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHHhhhhcCCCCHHHHHHHHhhh
Q 035550 269 IMG-TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKDDRREWEDVLSSK 347 (1385)
Q Consensus 269 ~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~ 347 (1385)
.++ ...+|+|++|+.++||+||.++||+.. .++.+++++++|+++|+|+||||+++|+.|+.+ . .+|...+...
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHH
Confidence 876 336799999999999999999998653 246788899999999999999999999999876 3 2344444444
Q ss_pred hhhhccccccchHHHHHhhhcCChhhhhhhh-----------hhcccCCCcccChHHHHHHHHHc--CCCccCCCCCcHH
Q 035550 348 IWELQEERCDIIPALRVSYYYLSAPLKQCFA-----------YCSLFPKDYEFEEEEIILLWCAS--GFLGHKESGNPIE 414 (1385)
Q Consensus 348 ~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~-----------~~~~fp~~~~~~~~~li~~w~a~--g~~~~~~~~~~~~ 414 (1385)
.+.. ....+.+++.+||++||+++|.||+ |||+||+++.|+ +..|+|+ ||+.......+.+
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 4432 2457889999999999999999999 999999999998 8899999 9998765466778
Q ss_pred HHHHHHHHHHHHcCCccccCC-CCCeEEEchhHHHHHHhhccceEE
Q 035550 415 DLGRKFFQELRSRSFFQQSSN-NESRFVMHDLVNDLAQWAAGEIYF 459 (1385)
Q Consensus 415 ~~~~~~~~~L~~~sll~~~~~-~~~~~~mhdlv~~~~~~~~~~~~~ 459 (1385)
++++ |+++|+++||++.... ...+|+|||+||++|++++.++++
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 8888 9999999999998653 456899999999999999877654
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.5e-44 Score=465.32 Aligned_cols=637 Identities=17% Similarity=0.082 Sum_probs=332.9
Q ss_pred cccccccCCceeEEEEcCcccccccccccCCccccEEeccccccc-ccch--hhhccCCccEEecCCCcchhhhhhcc-c
Q 035550 522 ILPKLFKLQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIR-TLPE--SVNKLYNLHTLLLEGCRRLKKLCADM-G 597 (1385)
Q Consensus 522 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~-~lP~--~i~~L~~L~~L~L~~~~~l~~lp~~i-~ 597 (1385)
+++.+.++++|++++++.+.+..+|..|+++++|++|+|++|.+. .+|. .++++++|++|++++|......|..+ .
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred cChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhc
Confidence 567788889999999999888888888999999999999999887 6777 88999999999999986666667665 7
Q ss_pred ccCCCCeeecCCCCCcccccCC---CCcccccccccceEecCCCCcChhhhcccccccceeEEeccCCCCCcchhHHhhc
Q 035550 598 NLIKLHHLDNLDTGSLEEMPLG---IGKLTCLQTLCNFVVGKDSGSGIRELKLLTHLRGTLNISKLENVKDIGDAKEAQL 674 (1385)
Q Consensus 598 ~L~~L~~L~l~~~~~~~~lp~~---i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l 674 (1385)
++++|++|++++|......|.. ++++++|++|..... .+... ..+
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n------------------------~l~~~--------~~~ 196 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN------------------------KISGD--------VDV 196 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS------------------------EEESC--------CBC
T ss_pred cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCC------------------------ccccc--------CCc
Confidence 8999999999988433333433 566677776621110 00000 012
Q ss_pred CCCCCCceEEEEEccCCCCCCchhhhhHHhhcccCCCCCCccceEEeccCCC-CCCcccCCCCcccccEEEeeCCCCCCC
Q 035550 675 DGKKNLKVLKFQWTQSTNDLSSREAETEKDVLVMLKPHENLEQFCISGYEGK-EFPTWLGDSSFSNLATLKFEDCGVCTT 753 (1385)
Q Consensus 675 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~ 753 (1385)
..+++|+.|++++|...+.. ..+..+++|++|+++++... .+|.++.. +++|+.|++++|.+.+.
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~------------~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~--l~~L~~L~Ls~n~l~~~ 262 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGI------------PFLGDCSALQHLDISGNKLSGDFSRAIST--CTELKLLNISSNQFVGP 262 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCC------------CBCTTCCSCCEEECCSSCCCSCHHHHTTT--CSSCCEEECCSSCCEES
T ss_pred ccCCcCCEEECcCCcCCCCC------------cccccCCCCCEEECcCCcCCCcccHHHhc--CCCCCEEECCCCcccCc
Confidence 45566777777766654221 12455667777777766655 34555543 66777777777766655
Q ss_pred CCCCCCCCCCCeEEEcCCcCceEeCccccCCCCCCCCCCcceeecccccccccccccccCCccccCccccEEeecCCcCc
Q 035550 754 LPSVGQLPSLKHLEVRGMRRVKSLGSEFYGNDSPIPFPCLETLCFEDMQEWEDWIPLRSGQGVEGFRKLRELHIISCSKL 833 (1385)
Q Consensus 754 l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L 833 (1385)
+|.. .+++|++|++++|.....++..+.. .+++|++|+++++.-... .+ ..+..+++|++|++++| .+
T Consensus 263 ~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~-----~~~~L~~L~Ls~n~l~~~-~p----~~~~~l~~L~~L~L~~n-~l 330 (768)
T 3rgz_A 263 IPPL-PLKSLQYLSLAENKFTGEIPDFLSG-----ACDTLTGLDLSGNHFYGA-VP----PFFGSCSLLESLALSSN-NF 330 (768)
T ss_dssp CCCC-CCTTCCEEECCSSEEEESCCCCSCT-----TCTTCSEEECCSSEEEEC-CC----GGGGGCTTCCEEECCSS-EE
T ss_pred cCcc-ccCCCCEEECcCCccCCccCHHHHh-----hcCcCCEEECcCCcCCCc-cc----hHHhcCCCccEEECCCC-cc
Confidence 5544 6677777777766543344333222 135566666555421111 11 11224555666666655 34
Q ss_pred ccCCC----CCCCCccEEEEccccCccccCCCCCcccEEEEccCCchhhcccccccCCCcccccccCCccccccCccccc
Q 035550 834 QGTFP----EHLPALEMLVIGGCEELLVSVASLPALCKIEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKQR 909 (1385)
Q Consensus 834 ~~~~p----~~l~~L~~L~l~~c~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 909 (1385)
.+.+| ..+++|+.|++++|.... .+
T Consensus 331 ~~~ip~~~l~~l~~L~~L~Ls~n~l~~------------------------------------------------~~--- 359 (768)
T 3rgz_A 331 SGELPMDTLLKMRGLKVLDLSFNEFSG------------------------------------------------EL--- 359 (768)
T ss_dssp EEECCHHHHTTCTTCCEEECCSSEEEE------------------------------------------------CC---
T ss_pred cCcCCHHHHhcCCCCCEEeCcCCccCc------------------------------------------------cc---
Confidence 33444 233444444444432110 00
Q ss_pred CCCccEEEEecccCccccccccchhhhccC-ccceEeecCCCCcccchhhhhhHHHHHhhhccccccEEEeccCCCCCcC
Q 035550 910 IPKLEELEIKNIKNETHIWKSHNELLQDIC-SLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKL 988 (1385)
Q Consensus 910 l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~-~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~l~~l 988 (1385)
+..+..++ +|+.|+++++.--..++..... ...++|++|++++|.....+
T Consensus 360 ----------------------p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~-------~~~~~L~~L~L~~n~l~~~~ 410 (768)
T 3rgz_A 360 ----------------------PESLTNLSASLLTLDLSSNNFSGPILPNLCQ-------NPKNTLQELYLQNNGFTGKI 410 (768)
T ss_dssp ----------------------CTTHHHHTTTCSEEECCSSEEEEECCTTTTC-------STTCCCCEEECCSSEEEEEC
T ss_pred ----------------------cHHHHhhhcCCcEEEccCCCcCCCcChhhhh-------cccCCccEEECCCCcccccc
Confidence 01112222 4444444443211111111000 00134555555555544445
Q ss_pred cccccCCCCccEEEeccCCCcccccC-ccCccccceEEeecCCCCCCCCcccccCCCCCcceEEeecCCCCcccc-ccCC
Q 035550 989 PQSSLSLSSLREIEIYKCSSLVSFPE-VALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEILNIEDCHSLTYIA-AVQL 1066 (1385)
Q Consensus 989 ~~~~~~l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~ 1066 (1385)
|..+..+++|++|++++|.....+|. +..+++|+.|++++|...+.+|..+. .+++|++|++++|.....++ .+..
T Consensus 411 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~l~~ 488 (768)
T 3rgz_A 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM--YVKTLETLILDFNDLTGEIPSGLSN 488 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred CHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc--CCCCceEEEecCCcccCcCCHHHhc
Confidence 55555555555555555533323332 33444555555555554444444332 23355555555554432222 2233
Q ss_pred CCCcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchhhhccccCCCCcccceeEEc
Q 035550 1067 PPSLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPATLESLEVGNLPSSLKSLVVW 1146 (1385)
Q Consensus 1067 ~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~l~~~~~~~~L~~L~L~ 1146 (1385)
+++|+.|++++|.....++. ....+++|+.|++++|.-. +.+|..+..+ ++|+.|+++
T Consensus 489 l~~L~~L~L~~N~l~~~~p~----------~~~~l~~L~~L~L~~N~l~------~~~p~~l~~l------~~L~~L~Ls 546 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGEIPK----------WIGRLENLAILKLSNNSFS------GNIPAELGDC------RSLIWLDLN 546 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCG----------GGGGCTTCCEEECCSSCCE------EECCGGGGGC------TTCCEEECC
T ss_pred CCCCCEEEccCCccCCcCCh----------HHhcCCCCCEEECCCCccc------CcCCHHHcCC------CCCCEEECC
Confidence 45555555555543222221 1112445666666555322 1234444444 689999999
Q ss_pred ccCcchhhhhhcCCCCCCcEEeecCCCC----------------------ccccCCCCCCccCcceEEeccccCcccccc
Q 035550 1147 SCSKLESIAERLDNNTSLETISIDSCGN----------------------LVSFPEGGLPCVKLRMLAITNCKRLEALPK 1204 (1385)
Q Consensus 1147 ~~~~~~~~~~~l~~l~~L~~L~L~~n~~----------------------l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~ 1204 (1385)
+|.+.+.+|..+..+..+..+++..+.. .+..+..+..+..+..+++..|.+.+.+|.
T Consensus 547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~ 626 (768)
T 3rgz_A 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626 (768)
T ss_dssp SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence 9999999998887766655544333110 011111122233344444444444455555
Q ss_pred cCCCCCccceeeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhh
Q 035550 1205 GLHNLTSLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDK 1284 (1385)
Q Consensus 1205 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 1284 (1385)
.+..+++|+.|++++|.+.+.+|..++.+++|+.|+|++|.+.. ..|..+.++++|+.|+|++|... .
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g----~ip~~l~~L~~L~~LdLs~N~l~--------g 694 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG----SIPDEVGDLRGLNILDLSSNKLD--------G 694 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS----CCCGGGGGCTTCCEEECCSSCCE--------E
T ss_pred hhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC----CCChHHhCCCCCCEEECCCCccc--------C
Confidence 55555555555555555555555555555555555555554321 22234455555555555553210 0
Q ss_pred hccCcCCCCcccceeecccccccccccccCCCCCCCCeEeccCCCCCCC
Q 035550 1285 RLGTALPLPASLTSLWIFNFPNLERLSSSIVDLQNLTELKLHNCPKLKY 1333 (1385)
Q Consensus 1285 ~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 1333 (1385)
.++..+..+++|+.|++++|+.-+.+|. .+.+.++....+.+|+.+-.
T Consensus 695 ~ip~~l~~l~~L~~L~ls~N~l~g~iP~-~~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 695 RIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp CCCGGGGGCCCCSEEECCSSEEEEECCS-SSSGGGSCGGGGCSCTEEES
T ss_pred cCChHHhCCCCCCEEECcCCcccccCCC-chhhccCCHHHhcCCchhcC
Confidence 1122223444555555555444445553 24455555666666665543
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.1e-38 Score=400.87 Aligned_cols=207 Identities=14% Similarity=0.019 Sum_probs=163.4
Q ss_pred cccceeEEcccCcchhhh-hhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCc--ccccccCCCCCccce
Q 035550 1138 SSLKSLVVWSCSKLESIA-ERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRL--EALPKGLHNLTSLQE 1214 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~-~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~--~~lp~~l~~l~~L~~ 1214 (1385)
++|+.|++++|.+.+.+| ..+.++++|++|++++|.+....+..+..+++|++|++++|.+. +.+|..+..+++|+.
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 689999999998887665 67888999999999999976667778888999999999999865 677888999999999
Q ss_pred eeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhh----cCccCCCCCccceEEecccCCccccchhhhhhccCcC
Q 035550 1215 LTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIE----RGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTAL 1290 (1385)
Q Consensus 1215 L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~ 1290 (1385)
|++++|.+....+..+..+++|++|++++|.+....... ....+.++++|+.|++++|... .++ ...+
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~--~i~------~~~~ 556 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD--EIP------VEVF 556 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC--CCC------TTTT
T ss_pred EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC--CCC------HHHc
Confidence 999999887777777888999999999999865432211 1123788999999999997422 111 1345
Q ss_pred CCCcccceeeccccccccccccc-CCCCCCCCeEeccCCCCCCCCCCCCC---CCccceeeecCChhh
Q 035550 1291 PLPASLTSLWIFNFPNLERLSSS-IVDLQNLTELKLHNCPKLKYFPEKGL---PSSLLQLQIVGCPLM 1354 (1385)
Q Consensus 1291 ~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~---~~sL~~L~i~~c~~l 1354 (1385)
..+++|+.|+++++ .++.+|.. +..+++|++|++++| +++.++...+ .++|+.|++++||-.
T Consensus 557 ~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 557 KDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred ccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCcc
Confidence 67889999999885 78888874 578999999999997 6888876433 478999999988753
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.9e-36 Score=383.81 Aligned_cols=98 Identities=26% Similarity=0.328 Sum_probs=73.7
Q ss_pred CceeEEEEcCccccccc-ccccCCccccEEeccccccccc-chhhhccCCccEEecCCCcchhhhhh-cccccCCCCeee
Q 035550 530 QRLRVFSLRGYYISELP-DSFGDLRYLRYLNLSLTEIRTL-PESVNKLYNLHTLLLEGCRRLKKLCA-DMGNLIKLHHLD 606 (1385)
Q Consensus 530 ~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~l-P~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 606 (1385)
++|++|+|++|.++.+| ..|+++++|++|+|++|.++.+ |..++++++|++|++++| .+..+|. .|+++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEE
Confidence 67888888888888776 4688888888888888888855 567788888888888886 5566665 488888888888
Q ss_pred cCCCCCcccccC-CCCcccccccc
Q 035550 607 NLDTGSLEEMPL-GIGKLTCLQTL 629 (1385)
Q Consensus 607 l~~~~~~~~lp~-~i~~L~~L~~L 629 (1385)
+++| .+..+|. .++++++|++|
T Consensus 104 L~~n-~l~~~~~~~~~~l~~L~~L 126 (680)
T 1ziw_A 104 LMSN-SIQKIKNNPFVKQKNLITL 126 (680)
T ss_dssp CCSS-CCCCCCSCTTTTCTTCCEE
T ss_pred CCCC-ccCccChhHccccCCCCEE
Confidence 8888 4566653 36666666655
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.1e-35 Score=375.42 Aligned_cols=297 Identities=18% Similarity=0.117 Sum_probs=157.3
Q ss_pred cccEEEeccCCCCCcCcccccCCCCccEEEeccCCCcccccC-ccCccccceEEeecCCCCCCCCcccccCCCCCcceEE
Q 035550 973 RLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE-VALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEILN 1051 (1385)
Q Consensus 973 ~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 1051 (1385)
+|++|++++|......+..+..+++|++|++++| .++.+|. +..+++|++|++++|......|..+ ..+++|++|+
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~ 331 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISA--SNFPSLTHLS 331 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCG--GGCTTCSEEE
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhh--hccCcCCEEE
Confidence 6778888888766555666778888888888888 4455553 5556777777777776333333332 2334566666
Q ss_pred eecCCCCccccc--cCCCCCcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchhhh
Q 035550 1052 IEDCHSLTYIAA--VQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPATLE 1129 (1385)
Q Consensus 1052 l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~ 1129 (1385)
+++|.....++. +..++
T Consensus 332 l~~n~~~~~~~~~~~~~l~------------------------------------------------------------- 350 (606)
T 3t6q_A 332 IKGNTKRLELGTGCLENLE------------------------------------------------------------- 350 (606)
T ss_dssp CCSCSSCCBCCSSTTTTCT-------------------------------------------------------------
T ss_pred CCCCCcccccchhhhhccC-------------------------------------------------------------
Confidence 655543222211 12223
Q ss_pred ccccCCCCcccceeEEcccCcchhh--hhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccc-cC
Q 035550 1130 SLEVGNLPSSLKSLVVWSCSKLESI--AERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPK-GL 1206 (1385)
Q Consensus 1130 ~l~~~~~~~~L~~L~L~~~~~~~~~--~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~-~l 1206 (1385)
+|++|++++|.+.+.. +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|. .+
T Consensus 351 ---------~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 421 (606)
T 3t6q_A 351 ---------NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421 (606)
T ss_dssp ---------TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTT
T ss_pred ---------cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhh
Confidence 4444444444444333 34455555555555555554444444555555555555555554444332 24
Q ss_pred CCCCccceeeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhc
Q 035550 1207 HNLTSLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRL 1286 (1385)
Q Consensus 1207 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l 1286 (1385)
..+++|+.|++++|.+....|..++.+++|++|++++|++.... ...+..+..+++|+.|++++|... . ..
T Consensus 422 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~l~~L~~L~Ls~n~l~--~------~~ 492 (606)
T 3t6q_A 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN-IQKTNSLQTLGRLEILVLSFCDLS--S------ID 492 (606)
T ss_dssp TTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGE-ECSSCGGGGCTTCCEEECTTSCCC--E------EC
T ss_pred hCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccc-cccchhhccCCCccEEECCCCccC--c------cC
Confidence 55555555555555555555555555555555555555432210 011123455555666666554311 0 01
Q ss_pred cCcCCCCcccceeecccccccccccccCCCCCCCCeEeccCCCCCCCCCCCCC--CCccceeeecCChh
Q 035550 1287 GTALPLPASLTSLWIFNFPNLERLSSSIVDLQNLTELKLHNCPKLKYFPEKGL--PSSLLQLQIVGCPL 1353 (1385)
Q Consensus 1287 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~sL~~L~i~~c~~ 1353 (1385)
+..+..+++|+.|++++|..-...|..+.++++| .|++++| +++.+++..+ .++|+.|++++||-
T Consensus 493 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCCc
Confidence 1233445556666666653333345566666677 7777765 3555554322 25667777766653
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.6e-36 Score=376.78 Aligned_cols=179 Identities=17% Similarity=0.031 Sum_probs=82.4
Q ss_pred ccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccC-CCCCCccCcceEEeccccCcccccccCCCCCccceeec
Q 035550 1139 SLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFP-EGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTI 1217 (1385)
Q Consensus 1139 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~-~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L 1217 (1385)
+|++|++++|.+.+ +|..+.++++|++|++++|.+.+..| ..+..+++|++|++++|.+.+..|..+..+++|++|++
T Consensus 377 ~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 455 (606)
T 3vq2_A 377 SLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455 (606)
T ss_dssp CCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred cccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEEC
Confidence 44444444443222 23344444444444444444333333 23444444444444444444444444444444444544
Q ss_pred cccCCCC-CCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCCCCccc
Q 035550 1218 GIGGALP-SLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLPASL 1296 (1385)
Q Consensus 1218 ~~n~~~~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~L 1296 (1385)
++|.+.+ .+|..++.+++|++|++++|.+... .+..+.++++|++|++++|...- ..+..+..+++|
T Consensus 456 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L 523 (606)
T 3vq2_A 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI----SWGVFDTLHRLQLLNMSHNNLLF--------LDSSHYNQLYSL 523 (606)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECCSSCCSC--------EEGGGTTTCTTC
T ss_pred CCCcCCCcchHHhhccCCCCCEEECCCCcCCcc----ChhhhcccccCCEEECCCCcCCC--------cCHHHccCCCcC
Confidence 4444433 2344444444455555544442211 12334444555555555442100 001223334445
Q ss_pred ceeecccccccccccccCCCCC-CCCeEeccCCCCC
Q 035550 1297 TSLWIFNFPNLERLSSSIVDLQ-NLTELKLHNCPKL 1331 (1385)
Q Consensus 1297 ~~L~l~~~~~l~~l~~~~~~l~-~L~~L~l~~c~~l 1331 (1385)
+.|++++| .++.+|..+..++ +|++|++++||-.
T Consensus 524 ~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 524 STLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred CEEECCCC-cCcccCHhHhhhcccCcEEEccCCCcc
Confidence 55555544 4666776666665 4777777776633
No 8
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=7.3e-38 Score=380.38 Aligned_cols=285 Identities=19% Similarity=0.246 Sum_probs=228.9
Q ss_pred eeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCc-EEEEEeCCCCCHHHHHHHHHH
Q 035550 119 VYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDL-KAWTCVSDDFDVIRLTKSILL 197 (1385)
Q Consensus 119 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~ 197 (1385)
.|||++++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4999999999999997532 3689999999999999999999987778889986 999999999998888888877
Q ss_pred HhcCCC---C--CC-----ccCHHHHHHHHHhHc---CCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccch
Q 035550 198 SIASDQ---I--VD-----NHDLNKLQEELKKKL---SPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQ 264 (1385)
Q Consensus 198 ~~~~~~---~--~~-----~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 264 (1385)
.+.... . .. ..+.+.+.+.+++.| +++|+||||||||+. +.|+.+ + +||+||||||++
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd~ 275 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSCS
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccCh
Confidence 543211 0 00 123445666777755 789999999999873 566653 2 689999999999
Q ss_pred hHhhhhCCCCcccCC------CCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHHhhhhcCCC-CH
Q 035550 265 GVAAIMGTAPAYQLK------KLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKD-DR 337 (1385)
Q Consensus 265 ~v~~~~~~~~~~~l~------~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~-~~ 337 (1385)
.++..+.....|+++ +|+.+|||+||+++. +.. . .++..+| |+|+||||+++|+.|+.+. ..
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ 344 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPREV---LTTNPRRLSIIAESIRDGLATW 344 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC----H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCH
Confidence 998755444567777 999999999999883 221 1 1233333 9999999999999999875 46
Q ss_pred HHHHHHHhhhhhhhccccccchHHHHHhhhcCChhh-hhhhhhhcccCCCcccChHHHHHHHHHcCCCccCCCCCcHHHH
Q 035550 338 REWEDVLSSKIWELQEERCDIIPALRVSYYYLSAPL-KQCFAYCSLFPKDYEFEEEEIILLWCASGFLGHKESGNPIEDL 416 (1385)
Q Consensus 338 ~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cf~~~~~fp~~~~~~~~~li~~w~a~g~~~~~~~~~~~~~~ 416 (1385)
++|... ....+..+|.+||+.||+++ |+||++||+||+++.|+.+.++.+|+++| ++.
T Consensus 345 eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eed 403 (1221)
T 1vt4_I 345 DNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSD 403 (1221)
T ss_dssp HHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHH
T ss_pred HHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHH
Confidence 778653 13568999999999999999 99999999999999999999999998876 134
Q ss_pred HHHHHHHHHHcCCccccCCCCCeEEEchhHHHHH
Q 035550 417 GRKFFQELRSRSFFQQSSNNESRFVMHDLVNDLA 450 (1385)
Q Consensus 417 ~~~~~~~L~~~sll~~~~~~~~~~~mhdlv~~~~ 450 (1385)
++.++++|+++||++.. ....+|+|||++++++
T Consensus 404 Ae~~L~eLvdRSLLq~d-~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 404 VMVVVNKLHKYSLVEKQ-PKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHTSSSSSBC-SSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHhhCCEEEe-CCCCEEEehHHHHHHh
Confidence 88999999999999984 3356899999999865
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.9e-35 Score=373.04 Aligned_cols=248 Identities=13% Similarity=0.057 Sum_probs=143.3
Q ss_pred ccccEEEeccCCCCCcCcccccCCCCccEEEeccCCCccccc-CccCccccceEEeecCCCCCCCCcccccCCCCCcceE
Q 035550 972 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFP-EVALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEIL 1050 (1385)
Q Consensus 972 ~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 1050 (1385)
++|++|++++|.. ..+|..+..+++|++|++++|......| .+..+++|+.|++++|.....+|... ...+++|++|
T Consensus 278 ~~L~~L~l~~n~l-~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~L 355 (606)
T 3t6q_A 278 SGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC-LENLENLREL 355 (606)
T ss_dssp TTCSEEECTTSCC-SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST-TTTCTTCCEE
T ss_pred cCCCEEeccCCcc-CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh-hhccCcCCEE
Confidence 6888888888864 4788888888999999999885444334 36678889999999988665666542 2456789999
Q ss_pred EeecCCCCccc---cccCCCCCcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchh
Q 035550 1051 NIEDCHSLTYI---AAVQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPAT 1127 (1385)
Q Consensus 1051 ~l~~~~~l~~~---~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~ 1127 (1385)
++++|...... ..+..+++|+.|++++|.. ..+. +..
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~---------------------------------------~~~ 395 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP-LSLK---------------------------------------TEA 395 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSC-EEEC---------------------------------------TTT
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCCcC-CcCC---------------------------------------HHH
Confidence 99988744332 1233344555555555421 1110 000
Q ss_pred hhccccCCCCcccceeEEcccCcchhhhh-hcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCccc---cc
Q 035550 1128 LESLEVGNLPSSLKSLVVWSCSKLESIAE-RLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEA---LP 1203 (1385)
Q Consensus 1128 l~~l~~~~~~~~L~~L~L~~~~~~~~~~~-~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~---lp 1203 (1385)
+ ..+ ++|++|++++|.+.+..+. .+.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+. .+
T Consensus 396 ~-----~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 469 (606)
T 3t6q_A 396 F-----KEC-PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469 (606)
T ss_dssp T-----TTC-TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSS
T ss_pred h-----cCC-ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccc
Confidence 0 011 3555566655555544432 255566666666666665555555555566666666666655441 12
Q ss_pred ccCCCCCccceeeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEeccc
Q 035550 1204 KGLHNLTSLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGC 1272 (1385)
Q Consensus 1204 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 1272 (1385)
..+..+++|+.|++++|.+.+..|..++.+++|++|++++|++.... +..+.++++| .|++++|
T Consensus 470 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS----IEALSHLKGI-YLNLASN 533 (606)
T ss_dssp CGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGG----GGGGTTCCSC-EEECCSS
T ss_pred hhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCC----hhHhCccccc-EEECcCC
Confidence 34555666666666666555555555555566666666665533221 2334455555 5555553
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.4e-36 Score=376.35 Aligned_cols=200 Identities=18% Similarity=0.144 Sum_probs=125.4
Q ss_pred CceeEEEEcCccccccc-ccccCCccccEEeccccccccc-chhhhccCCccEEecCCCcchhhhhhcccccCCCCeeec
Q 035550 530 QRLRVFSLRGYYISELP-DSFGDLRYLRYLNLSLTEIRTL-PESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLDN 607 (1385)
Q Consensus 530 ~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~l-P~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 607 (1385)
++|++|+|++|.++.+| ..|.++++|++|+|++|.++.+ |..|+++++|++|++++|......|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 67888888888888775 4788888888888888888866 467888888888888887544444777888888888888
Q ss_pred CCCCCccccc-CCCCcccccccccceEecCCCCcChhhhcccccccceeEEeccCCCCCcchhHHhhcCCCCCCceEEEE
Q 035550 608 LDTGSLEEMP-LGIGKLTCLQTLCNFVVGKDSGSGIRELKLLTHLRGTLNISKLENVKDIGDAKEAQLDGKKNLKVLKFQ 686 (1385)
Q Consensus 608 ~~~~~~~~lp-~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 686 (1385)
++| .+..+| ..++++++|++|.... +.+.. ...+..+.++++|+.|+++
T Consensus 112 ~~n-~l~~~~~~~~~~l~~L~~L~L~~------------------------n~l~~-----~~lp~~~~~l~~L~~L~Ls 161 (606)
T 3vq2_A 112 VET-KLASLESFPIGQLITLKKLNVAH------------------------NFIHS-----CKLPAYFSNLTNLVHVDLS 161 (606)
T ss_dssp TTS-CCCCSSSSCCTTCTTCCEEECCS------------------------SCCCC-----CCCCGGGGTCTTCCEEECC
T ss_pred cCC-ccccccccccCCCCCCCEEeCCC------------------------Ccccc-----eechHhHhhcCCCCEEEcc
Confidence 888 566665 4577777777772111 11100 0123345666777777777
Q ss_pred EccCCCCCCchhhhhHHhhcccCCCCCC-ccceEEeccCCCCCCcccCCCCcccccEEEeeCCCCCC-CCC-CCCCCCCC
Q 035550 687 WTQSTNDLSSREAETEKDVLVMLKPHEN-LEQFCISGYEGKEFPTWLGDSSFSNLATLKFEDCGVCT-TLP-SVGQLPSL 763 (1385)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~-L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~-~l~-~l~~l~~L 763 (1385)
+|......+.. +..+..++. +..|+++++....+|..... ..+|+.|++++|.... ..| .++.+++|
T Consensus 162 ~n~l~~~~~~~--------~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~--~~~L~~L~L~~n~~~~~~~~~~~~~l~~L 231 (606)
T 3vq2_A 162 YNYIQTITVND--------LQFLRENPQVNLSLDMSLNPIDFIQDQAFQ--GIKLHELTLRGNFNSSNIMKTCLQNLAGL 231 (606)
T ss_dssp SSCCCEECTTT--------THHHHHCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCHHHHHHHHHTTTTC
T ss_pred CCcceecChhh--------hhhhhccccccceeeccCCCcceeCccccc--CceeeeeeccCCccchhHHHHHhcccccc
Confidence 76654322111 011111111 34567777666666555443 3367777777766532 222 35566666
Q ss_pred CeEEEc
Q 035550 764 KHLEVR 769 (1385)
Q Consensus 764 ~~L~L~ 769 (1385)
+.+.+.
T Consensus 232 ~~l~l~ 237 (606)
T 3vq2_A 232 HVHRLI 237 (606)
T ss_dssp EEEEEE
T ss_pred cccccc
Confidence 666554
No 11
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.5e-36 Score=411.20 Aligned_cols=311 Identities=20% Similarity=0.325 Sum_probs=247.6
Q ss_pred cCCeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccc-cccC-CcEEEEEeCCCCC--HHH
Q 035550 115 NEAKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQV-QDHF-DLKAWTCVSDDFD--VIR 190 (1385)
Q Consensus 115 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~--~~~ 190 (1385)
....||||++++++|.++|.... .+.++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ...
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 45679999999999999996542 35799999999999999999999997543 4445 6788999988543 445
Q ss_pred HHHHHHHHhcCCCC---CCccCHHHHHHHHHhHcCCC--eEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchh
Q 035550 191 LTKSILLSIASDQI---VDNHDLNKLQEELKKKLSPK--KFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQG 265 (1385)
Q Consensus 191 ~~~~i~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~--~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 265 (1385)
.+..++..+..... ....+.+.+.+.++..+.++ |+||||||||+. .+|+.+ ++||+||||||++.
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEcCCHH
Confidence 56677777765432 13456788899999999877 999999999864 445443 57899999999999
Q ss_pred Hhhh-hCCCCcccCCC-CChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHHhhhhcCCCCHHHHHHH
Q 035550 266 VAAI-MGTAPAYQLKK-LSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKDDRREWEDV 343 (1385)
Q Consensus 266 v~~~-~~~~~~~~l~~-L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~ 343 (1385)
++.. ++....+++++ |+.+||++||...++... +...+++++|+++|+|+||||+++|++|+.+. ..|...
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~ 341 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYY 341 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHH
Confidence 9854 45567899996 999999999999885332 23446788999999999999999999998775 357777
Q ss_pred Hhhhhhhhcc--------ccccchHHHHHhhhcCChhhhhhhhhhcccCCCcccChHHHHHHHHHcCCCccCCCCCcHHH
Q 035550 344 LSSKIWELQE--------ERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLGHKESGNPIED 415 (1385)
Q Consensus 344 l~~~~~~~~~--------~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~~~~~~li~~w~a~g~~~~~~~~~~~~~ 415 (1385)
++........ ....+..+|.+||+.||+++|+||+|||+||+++.|+++.++..|.++ ++
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~ 409 (1249)
T 3sfz_A 342 LRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TE 409 (1249)
T ss_dssp HHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HH
T ss_pred HHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HH
Confidence 6654322111 113588899999999999999999999999999999999999999543 36
Q ss_pred HHHHHHHHHHHcCCccccCCC-CCeEEEchhHHHHHHhhccce
Q 035550 416 LGRKFFQELRSRSFFQQSSNN-ESRFVMHDLVNDLAQWAAGEI 457 (1385)
Q Consensus 416 ~~~~~~~~L~~~sll~~~~~~-~~~~~mhdlv~~~~~~~~~~~ 457 (1385)
.+++++++|+++||++....+ ..+|+||++||++++..+.++
T Consensus 410 ~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 410 EVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 689999999999999976433 346999999999999887654
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.6e-32 Score=353.88 Aligned_cols=102 Identities=24% Similarity=0.187 Sum_probs=80.3
Q ss_pred cCCceeEEEEcCcccccc-cccccCCccccEEeccccc-cccc-chhhhccCCccEEecCCCcchhhhhhcccccCCCCe
Q 035550 528 KLQRLRVFSLRGYYISEL-PDSFGDLRYLRYLNLSLTE-IRTL-PESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHH 604 (1385)
Q Consensus 528 ~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~-i~~l-P~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 604 (1385)
-.++|++|+|++|.|+.+ |..|.++.+|++|+|++|. +..+ |..|++|++|++|+|++|......|..|+++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 447889999999999876 6889999999999999984 4466 678899999999999998555555888999999999
Q ss_pred eecCCCCCcccccCC--CCcccccccc
Q 035550 605 LDNLDTGSLEEMPLG--IGKLTCLQTL 629 (1385)
Q Consensus 605 L~l~~~~~~~~lp~~--i~~L~~L~~L 629 (1385)
|++++|.....+|.. ++++++|++|
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L 128 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRL 128 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEE
Confidence 999998433335554 6777777766
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.3e-32 Score=341.34 Aligned_cols=81 Identities=26% Similarity=0.251 Sum_probs=50.1
Q ss_pred CceeEEEEcCccccccc-ccccCCccccEEecccccccccc-hhhhccCCccEEecCCCcchhhhhhcccccCCCCeeec
Q 035550 530 QRLRVFSLRGYYISELP-DSFGDLRYLRYLNLSLTEIRTLP-ESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLDN 607 (1385)
Q Consensus 530 ~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 607 (1385)
+++++|+|++|.++.++ ..|.++++|++|+|++|+++.+| ..|+++++|++|++++|......|..|+++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 35666677766666653 45666667777777766666554 45666666666666665322222345666666666666
Q ss_pred CCC
Q 035550 608 LDT 610 (1385)
Q Consensus 608 ~~~ 610 (1385)
++|
T Consensus 108 ~~n 110 (570)
T 2z63_A 108 VET 110 (570)
T ss_dssp TTS
T ss_pred ccc
Confidence 666
No 14
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=5.9e-33 Score=347.44 Aligned_cols=306 Identities=22% Similarity=0.336 Sum_probs=233.7
Q ss_pred cCCeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccc-cccC-CcEEEEEeCCCCCHHHHH
Q 035550 115 NEAKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQV-QDHF-DLKAWTCVSDDFDVIRLT 192 (1385)
Q Consensus 115 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~ 192 (1385)
....||||++++++|.++|.... ++.++|+|+||||+||||||++++++.++ ..+| +.++|++++.. +...+.
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~ 196 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLL 196 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHH
Confidence 45679999999999999996432 35789999999999999999999997655 7789 58999999775 333344
Q ss_pred HHH---HHHhcCCC---CCCccCHHHHHHHHHhHcCC--CeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccch
Q 035550 193 KSI---LLSIASDQ---IVDNHDLNKLQEELKKKLSP--KKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQ 264 (1385)
Q Consensus 193 ~~i---~~~~~~~~---~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 264 (1385)
..+ +..++... .....+.+.+...++..+.+ +++||||||||+. ..++. ...|++||||||++
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~~-------l~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLKA-------FDSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHHT-------TCSSCEEEEEESCG
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHHH-------hcCCCeEEEECCCc
Confidence 333 34444211 11345667778888887765 7999999999764 33332 25689999999999
Q ss_pred hHhhhhCCCCcccC---CCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHHhhhhcCCCCHHHHH
Q 035550 265 GVAAIMGTAPAYQL---KKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKDDRREWE 341 (1385)
Q Consensus 265 ~v~~~~~~~~~~~l---~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~ 341 (1385)
.++..+. ...+++ ++|+.+||++||...++... ....+.+.+|+++|+|+||||+++|+.++.+. ..|.
T Consensus 268 ~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~ 339 (591)
T 1z6t_A 268 SVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWE 339 (591)
T ss_dssp GGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHH
T ss_pred HHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHH
Confidence 8877543 334444 58999999999999886421 22235678899999999999999999998763 3687
Q ss_pred HHHhhhhhhhc--------cccccchHHHHHhhhcCChhhhhhhhhhcccCCCcccChHHHHHHHHHcCCCccCCCCCcH
Q 035550 342 DVLSSKIWELQ--------EERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLGHKESGNPI 413 (1385)
Q Consensus 342 ~~l~~~~~~~~--------~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~~~~~~li~~w~a~g~~~~~~~~~~~ 413 (1385)
..++....... .....+..++..||+.||++.|.||++||+||+|+.|+.+.++..|.++
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------ 407 (591)
T 1z6t_A 340 YYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------ 407 (591)
T ss_dssp HHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------
T ss_pred HHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------
Confidence 77765332211 1123578899999999999999999999999999999999999999432
Q ss_pred HHHHHHHHHHHHHcCCccccCC-CCCeEEEchhHHHHHHhhc
Q 035550 414 EDLGRKFFQELRSRSFFQQSSN-NESRFVMHDLVNDLAQWAA 454 (1385)
Q Consensus 414 ~~~~~~~~~~L~~~sll~~~~~-~~~~~~mhdlv~~~~~~~~ 454 (1385)
.+.+..++++|+++||++.... ...+|+||+++|++++...
T Consensus 408 ~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 408 TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 2457889999999999986542 3458999999999998773
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.5e-32 Score=336.01 Aligned_cols=200 Identities=20% Similarity=0.186 Sum_probs=145.3
Q ss_pred CceeEEEEcCcccccc-cccccCCccccEEecccccccccc-hhhhccCCccEEecCCCcchhhhhhcccccCCCCeeec
Q 035550 530 QRLRVFSLRGYYISEL-PDSFGDLRYLRYLNLSLTEIRTLP-ESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLDN 607 (1385)
Q Consensus 530 ~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~i~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 607 (1385)
+.|++|+|++|.++.+ |..|+++++|++|+|++|+++.+| ..|+++++|++|++++|......|..|+++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 6899999999999977 578999999999999999999766 67999999999999998544444445999999999999
Q ss_pred CCCCCccc--ccCCCCcccccccccceEecCCCCcChhhhcccccccceeEEeccCCCCCcchhHHhhcCCCCCCceEEE
Q 035550 608 LDTGSLEE--MPLGIGKLTCLQTLCNFVVGKDSGSGIRELKLLTHLRGTLNISKLENVKDIGDAKEAQLDGKKNLKVLKF 685 (1385)
Q Consensus 608 ~~~~~~~~--lp~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 685 (1385)
++| .+.. +|..++++++|++|....... ........+.++++|+.|++
T Consensus 106 s~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~-----------------------------~~~~~~~~~~~l~~L~~L~L 155 (549)
T 2z81_A 106 MGN-PYQTLGVTSLFPNLTNLQTLRIGNVET-----------------------------FSEIRRIDFAGLTSLNELEI 155 (549)
T ss_dssp TTC-CCSSSCSSCSCTTCTTCCEEEEEESSS-----------------------------CCEECTTTTTTCCEEEEEEE
T ss_pred CCC-cccccchhhhhhccCCccEEECCCCcc-----------------------------ccccCHhhhhcccccCeeec
Confidence 999 5653 456788888888873222110 01111234667788888888
Q ss_pred EEccCCCCCCchhhhhHHhhcccCCCCCCccceEEeccCCCCCCcccCCCCcccccEEEeeCCCCCCC----CCCCCCCC
Q 035550 686 QWTQSTNDLSSREAETEKDVLVMLKPHENLEQFCISGYEGKEFPTWLGDSSFSNLATLKFEDCGVCTT----LPSVGQLP 761 (1385)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~----l~~l~~l~ 761 (1385)
++|...+.. ...+..+++|+.|+++++....+|.++.. .+++|+.|++++|.+.+. .+....++
T Consensus 156 ~~n~l~~~~-----------~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 223 (549)
T 2z81_A 156 KALSLRNYQ-----------SQSLKSIRDIHHLTLHLSESAFLLEIFAD-ILSSVRYLELRDTNLARFQFSPLPVDEVSS 223 (549)
T ss_dssp EETTCCEEC-----------TTTTTTCSEEEEEEEECSBSTTHHHHHHH-STTTBSEEEEESCBCTTCCCCCCSSCCCCC
T ss_pred cCCcccccC-----------hhhhhccccCceEecccCcccccchhhHh-hcccccEEEccCCccccccccccchhhhhh
Confidence 888765322 23366677888888888877777766532 377888888888877552 22344567
Q ss_pred CCCeEEEcCC
Q 035550 762 SLKHLEVRGM 771 (1385)
Q Consensus 762 ~L~~L~L~~~ 771 (1385)
+|+.|++++|
T Consensus 224 ~L~~L~l~~n 233 (549)
T 2z81_A 224 PMKKLAFRGS 233 (549)
T ss_dssp CCCEEEEESC
T ss_pred cccceecccc
Confidence 7788887776
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.4e-32 Score=342.88 Aligned_cols=102 Identities=22% Similarity=0.254 Sum_probs=76.7
Q ss_pred ccceeEEcccCcchhhhhhcC--CCCCCcEEeecCCCCccccCCCCCCccCcceEEe------ccccCcccccccCCCCC
Q 035550 1139 SLKSLVVWSCSKLESIAERLD--NNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAI------TNCKRLEALPKGLHNLT 1210 (1385)
Q Consensus 1139 ~L~~L~L~~~~~~~~~~~~l~--~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L------~~n~~~~~lp~~l~~l~ 1210 (1385)
+|++|++++|.+. .+|..+. .+++|++|+|++|.+.+ +|..+..+++|++|+| ++|.+.+.+|..+..++
T Consensus 489 ~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~ 566 (636)
T 4eco_A 489 LLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566 (636)
T ss_dssp GCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred CccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC
Confidence 6677777777665 5666665 78888888888888555 7777778888888888 45667788888888888
Q ss_pred ccceeeccccCCCCCCcccCCCCCCcceeEecCCc
Q 035550 1211 SLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNM 1245 (1385)
Q Consensus 1211 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 1245 (1385)
+|+.|+|++|.+ +.+|..+. ++|++|++++|+
T Consensus 567 ~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 567 SLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp SCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCT
T ss_pred CCCEEECCCCcC-CccCHhHh--CcCCEEECcCCC
Confidence 888888888886 67775543 677777777776
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=2.2e-30 Score=336.96 Aligned_cols=124 Identities=24% Similarity=0.353 Sum_probs=95.7
Q ss_pred CCceeEecccccccCCCCCcccccccccccCCceeEEEEcCcc-cccc-cccccCCccccEEeccccccccc-chhhhcc
Q 035550 499 INHLRTFLPVTLSKSSCGHLARSILPKLFKLQRLRVFSLRGYY-ISEL-PDSFGDLRYLRYLNLSLTEIRTL-PESVNKL 575 (1385)
Q Consensus 499 ~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-i~~l-p~~i~~L~~L~~L~L~~~~i~~l-P~~i~~L 575 (1385)
.+.++.|.+... .+....+..|.++++|++|+|++|. +..+ |..|+++++|++|+|++|.+..+ |..|++|
T Consensus 23 p~~l~~LdLs~N------~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l 96 (844)
T 3j0a_A 23 LNTTERLLLSFN------YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96 (844)
T ss_dssp CTTCCEEEEESC------CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred CCCcCEEECCCC------cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence 456777765432 3455556778999999999999994 5566 68899999999999999999865 7889999
Q ss_pred CCccEEecCCCcchhhhhhc--ccccCCCCeeecCCCCCccccc--CCCCcccccccc
Q 035550 576 YNLHTLLLEGCRRLKKLCAD--MGNLIKLHHLDNLDTGSLEEMP--LGIGKLTCLQTL 629 (1385)
Q Consensus 576 ~~L~~L~L~~~~~l~~lp~~--i~~L~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L 629 (1385)
++|++|+|++|.....+|.. ++++++|++|++++| .+..++ ..++++++|++|
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSI 153 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEE
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEE
Confidence 99999999998555556665 899999999999999 455443 346677766666
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.98 E-value=3.4e-32 Score=341.44 Aligned_cols=103 Identities=13% Similarity=0.114 Sum_probs=66.0
Q ss_pred ccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCc--------cCcceEEeccccCcccccccCC--C
Q 035550 1139 SLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPC--------VKLRMLAITNCKRLEALPKGLH--N 1208 (1385)
Q Consensus 1139 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l--------~~L~~L~L~~n~~~~~lp~~l~--~ 1208 (1385)
+|++|++++|.+....+..+..+++|++|+|++|.+. .+|...... ++|++|+|++|.+. .+|..+. .
T Consensus 434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~ 511 (636)
T 4eco_A 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT 511 (636)
T ss_dssp CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTT
T ss_pred CCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhcc
Confidence 5666666666665433344556777777777777744 666544332 26777777777644 5666665 7
Q ss_pred CCccceeeccccCCCCCCcccCCCCCCcceeEecCC
Q 035550 1209 LTSLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGN 1244 (1385)
Q Consensus 1209 l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n 1244 (1385)
+++|+.|++++|.+.+ +|..++.+++|++|+|++|
T Consensus 512 l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp CTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSC
T ss_pred CCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCC
Confidence 7777777777777655 6666666667777776544
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.98 E-value=4.9e-31 Score=328.63 Aligned_cols=81 Identities=23% Similarity=0.289 Sum_probs=65.2
Q ss_pred eEEEEcCcccccccccccCCccccEEeccccccccc-chhhhccCCccEEecCCCcchhhhhhcccccCCCCeeecCCCC
Q 035550 533 RVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTL-PESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLDNLDTG 611 (1385)
Q Consensus 533 r~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~l-P~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 611 (1385)
.+.+++++.++.+|..+. .+|++|+|++|+++.+ |..|.++++|++|++++|......|..|+++++|++|++++|
T Consensus 8 ~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n- 84 (549)
T 2z81_A 8 GVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN- 84 (549)
T ss_dssp SEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-
T ss_pred ceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-
Confidence 346778889999998775 7999999999999966 578999999999999998544444567899999999999888
Q ss_pred Ccccc
Q 035550 612 SLEEM 616 (1385)
Q Consensus 612 ~~~~l 616 (1385)
.+..+
T Consensus 85 ~l~~~ 89 (549)
T 2z81_A 85 HLSSL 89 (549)
T ss_dssp CCCSC
T ss_pred ccCcc
Confidence 34433
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=6.1e-31 Score=329.83 Aligned_cols=122 Identities=21% Similarity=0.243 Sum_probs=92.4
Q ss_pred CceeEecccccccCCCCCcccccccccccCCceeEEEEcCccccccc-ccccCCccccEEecccccccccc-hhhhccCC
Q 035550 500 NHLRTFLPVTLSKSSCGHLARSILPKLFKLQRLRVFSLRGYYISELP-DSFGDLRYLRYLNLSLTEIRTLP-ESVNKLYN 577 (1385)
Q Consensus 500 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~lP-~~i~~L~~ 577 (1385)
+.++.|.+... .+....+..|.++++|++|+|++|.++.+| ..|+++.+|++|+|++|.++.+| ..|+++++
T Consensus 28 ~~l~~L~Ls~n------~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 28 FSTKNLDLSFN------PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp SSCCEEECCSC------CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred ccccEEEccCC------ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 35666644332 233334456788999999999999988874 67889999999999999998776 67899999
Q ss_pred ccEEecCCCcchhhhhh-cccccCCCCeeecCCCCCccc--ccCCCCcccccccc
Q 035550 578 LHTLLLEGCRRLKKLCA-DMGNLIKLHHLDNLDTGSLEE--MPLGIGKLTCLQTL 629 (1385)
Q Consensus 578 L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~--lp~~i~~L~~L~~L 629 (1385)
|++|++++| .+..+|. .++++++|++|++++| .+.. +|..++++++|++|
T Consensus 102 L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L 154 (570)
T 2z63_A 102 LQKLVAVET-NLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHL 154 (570)
T ss_dssp CCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEE
T ss_pred ccccccccc-ccccCCCccccccccccEEecCCC-ccceecChhhhcccCCCCEE
Confidence 999999987 5666665 5889999999999988 4443 56667666666665
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=3.3e-31 Score=335.65 Aligned_cols=104 Identities=21% Similarity=0.271 Sum_probs=79.3
Q ss_pred ccceeEEcccCcchhhhhhcC--CCCCCcEEeecCCCCccccCCCCCCccCcceEEecc------ccCcccccccCCCCC
Q 035550 1139 SLKSLVVWSCSKLESIAERLD--NNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITN------CKRLEALPKGLHNLT 1210 (1385)
Q Consensus 1139 ~L~~L~L~~~~~~~~~~~~l~--~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~------n~~~~~lp~~l~~l~ 1210 (1385)
+|+.|+|++|.+. .+|..+. .+++|+.|+|++|.+.+ +|..+..+++|+.|+|++ |.+.+.+|..+.+++
T Consensus 729 ~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 729 LLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806 (876)
T ss_dssp GCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred CccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence 6667777777555 5566665 77788888888877544 677777777888888765 777888888888999
Q ss_pred ccceeeccccCCCCCCcccCCCCCCcceeEecCCcch
Q 035550 1211 SLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEI 1247 (1385)
Q Consensus 1211 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~ 1247 (1385)
+|+.|+|++|.+ +.+|..+. ++|+.|+|++|++.
T Consensus 807 ~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 807 SLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp SCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTC
T ss_pred CCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCC
Confidence 999999999887 77886644 68999999998743
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1e-29 Score=313.96 Aligned_cols=108 Identities=19% Similarity=0.099 Sum_probs=70.5
Q ss_pred cccceeEEcccCcchhhhh-hcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceee
Q 035550 1138 SSLKSLVVWSCSKLESIAE-RLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELT 1216 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~~-~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~ 1216 (1385)
++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+.+|..+. ++|++|++++|.+. .+|..+..+++|++|+
T Consensus 374 ~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~ 450 (520)
T 2z7x_B 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELN 450 (520)
T ss_dssp TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEE
T ss_pred CCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEE
Confidence 4566666666666654443 356677777777777776666655443 47777777777644 6666666777777777
Q ss_pred ccccCCCCCCccc-CCCCCCcceeEecCCcchhh
Q 035550 1217 IGIGGALPSLEEE-DGLPTNLQSLNIWGNMEIWK 1249 (1385)
Q Consensus 1217 L~~n~~~~~~~~~-~~~~~~L~~L~L~~n~~~~~ 1249 (1385)
+++|.+. .+|.. +..+++|++|++++|+..+.
T Consensus 451 L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 451 VASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCcCC-ccCHHHhccCCcccEEECcCCCCccc
Confidence 7777655 44443 66677777777777765443
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=3.1e-30 Score=326.75 Aligned_cols=105 Identities=13% Similarity=0.115 Sum_probs=72.2
Q ss_pred cccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCc--------cCcceEEeccccCcccccccCC--
Q 035550 1138 SSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPC--------VKLRMLAITNCKRLEALPKGLH-- 1207 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l--------~~L~~L~L~~n~~~~~lp~~l~-- 1207 (1385)
++|+.|++++|.+....+..+..+++|+.|+|++|.+. .+|...... ++|++|+|++|.+. .+|..+.
T Consensus 673 ~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~ 750 (876)
T 4ecn_A 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRAT 750 (876)
T ss_dssp CCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTT
T ss_pred CCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhc
Confidence 36777777777766433334457888888888888744 666654432 37888888887644 6777665
Q ss_pred CCCccceeeccccCCCCCCcccCCCCCCcceeEecCCc
Q 035550 1208 NLTSLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNM 1245 (1385)
Q Consensus 1208 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 1245 (1385)
.+++|+.|+|++|.+.+ +|..++.+++|+.|+|++|+
T Consensus 751 ~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp TCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB
T ss_pred cCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC
Confidence 77788888888777665 56666677777777776653
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1.8e-29 Score=321.70 Aligned_cols=520 Identities=17% Similarity=0.093 Sum_probs=287.4
Q ss_pred CceeEEEEcCccccccc-ccccCCccccEEecccccccccc-hhhhccCCccEEecCCCcchhhhhh-cccccCCCCeee
Q 035550 530 QRLRVFSLRGYYISELP-DSFGDLRYLRYLNLSLTEIRTLP-ESVNKLYNLHTLLLEGCRRLKKLCA-DMGNLIKLHHLD 606 (1385)
Q Consensus 530 ~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 606 (1385)
..+++|||++|.|+.+| .+|.++++|++|+|++|+|+.+| .+|.+|++|++|+|++| .+..+|. .|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEE
Confidence 47899999999999996 68999999999999999999887 46899999999999997 5777775 589999999999
Q ss_pred cCCCCCcccccCC-CCcccccccccceEecCCCCcChhhhcccccccceeEEeccCCCCCcchhHHhhcCCCCCCceEEE
Q 035550 607 NLDTGSLEEMPLG-IGKLTCLQTLCNFVVGKDSGSGIRELKLLTHLRGTLNISKLENVKDIGDAKEAQLDGKKNLKVLKF 685 (1385)
Q Consensus 607 l~~~~~~~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 685 (1385)
+++| .+..+|.. +++|++|++|..... .+... ..+..+..+++|+.|++
T Consensus 131 Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N------------------------~l~~~-----~~~~~~~~l~~L~~L~L 180 (635)
T 4g8a_A 131 AVET-NLASLENFPIGHLKTLKELNVAHN------------------------LIQSF-----KLPEYFSNLTNLEHLDL 180 (635)
T ss_dssp CTTS-CCCCSTTCCCTTCTTCCEEECCSS------------------------CCCCC-----CCCGGGGGCTTCCEEEC
T ss_pred CCCC-cCCCCChhhhhcCcccCeeccccC------------------------ccccC-----CCchhhccchhhhhhcc
Confidence 9999 68888765 888988888832211 11110 01223556677888888
Q ss_pred EEccCCCCCCchhhhhHHhhcccCCCC-CCccceEEeccCCCCCCcccCCCCcccccEEEeeCCCCCCCCC--CCCCCCC
Q 035550 686 QWTQSTNDLSSREAETEKDVLVMLKPH-ENLEQFCISGYEGKEFPTWLGDSSFSNLATLKFEDCGVCTTLP--SVGQLPS 762 (1385)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~ 762 (1385)
++|.+....+.. +..+... .....++++.+....++..... ...+..+.+.++......+ .+..++.
T Consensus 181 ~~N~l~~~~~~~--------l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~--~~~~~~l~l~~n~~~~~~~~~~~~~l~~ 250 (635)
T 4g8a_A 181 SSNKIQSIYCTD--------LRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAG 250 (635)
T ss_dssp CSSCCCEECGGG--------GHHHHTCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSSHHHHHHHHHTTTT
T ss_pred cCcccccccccc--------ccchhhhhhhhhhhhcccCcccccCccccc--chhhhhhhhhcccccccccchhhcCCcc
Confidence 877765332211 1111111 1233456666666555543322 3456677777664422111 2445555
Q ss_pred CCeEEEcCCcCceEeCccccCCCCCCCCCCcceeecccccccc-cccccccCCccccCccccEEeecCCcCcccCCCCCC
Q 035550 763 LKHLEVRGMRRVKSLGSEFYGNDSPIPFPCLETLCFEDMQEWE-DWIPLRSGQGVEGFRKLRELHIISCSKLQGTFPEHL 841 (1385)
Q Consensus 763 L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l 841 (1385)
++...+............... ...+..+..+.+....... .............+.+++.+.+.++. +. .++
T Consensus 251 l~~~~l~~~~~~~~~~l~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~-~~~--- 322 (635)
T 4g8a_A 251 LEVHRLVLGEFRNEGNLEKFD---KSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVT-IE-RVK--- 322 (635)
T ss_dssp CEEEEEEEECCTTSCCCSCCC---TTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCE-EE-ECG---
T ss_pred ccccccccccccccccccccc---ccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccc-cc-ccc---
Confidence 555554322111000000000 0111111111111110000 00000000011133444444444442 11 111
Q ss_pred CCccEEEEccccCccccCCCCCcccEEEEccCCchhhcccccccCCCcccccccCCccccccCcccccCCCccEEEEecc
Q 035550 842 PALEMLVIGGCEELLVSVASLPALCKIEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKQRIPKLEELEIKNI 921 (1385)
Q Consensus 842 ~~L~~L~l~~c~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 921 (1385)
......+++.+.+.++... +.....++.|+.+.+.+.
T Consensus 323 ----------------~~~~~~~L~~L~l~~~~~~---------------------------~~~~~~l~~L~~l~l~~n 359 (635)
T 4g8a_A 323 ----------------DFSYNFGWQHLELVNCKFG---------------------------QFPTLKLKSLKRLTFTSN 359 (635)
T ss_dssp ----------------GGGSCCCCSEEEEESCEES---------------------------SCCCCBCTTCCEEEEESC
T ss_pred ----------------ccccchhhhhhhccccccc---------------------------CcCcccchhhhhcccccc
Confidence 1112233344444333210 000111223333332221
Q ss_pred cCccccccccchhhhccCccceEeecCCCCcccchhhhhhHHHHHhhhccccccEEEeccCCCCC--cCcccccCCCCcc
Q 035550 922 KNETHIWKSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLV--KLPQSSLSLSSLR 999 (1385)
Q Consensus 922 ~~~~~i~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~l~--~l~~~~~~l~~L~ 999 (1385)
..... .....+ ++|+.|++++|.... ..+..+..+.+|+
T Consensus 360 ~~~~~------~~~~~l---------------------------------~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~ 400 (635)
T 4g8a_A 360 KGGNA------FSEVDL---------------------------------PSLEFLDLSRNGLSFKGCCSQSDFGTISLK 400 (635)
T ss_dssp CSCCB------CCCCBC---------------------------------TTCCEEECCSSCCBEEEECCHHHHSCSCCC
T ss_pred cCCCC------cccccc---------------------------------cccccchhhccccccccccccchhhhhhhh
Confidence 11000 000011 345555555554321 1233344555666
Q ss_pred EEEeccCCCcccccCccCccccceEEeecCCCCCCCCcccccCCCCCcceEEeecCCCCccccccCCCCCcceEEeccCC
Q 035550 1000 EIEIYKCSSLVSFPEVALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEILNIEDCHSLTYIAAVQLPPSLKQLEIYNCD 1079 (1385)
Q Consensus 1000 ~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~ 1079 (1385)
.+++..+......+.+..+++|+.+++.++......+.. .+..+++++.++++.+.
T Consensus 401 ~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~------------------------~~~~l~~l~~l~ls~n~ 456 (635)
T 4g8a_A 401 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS------------------------VFLSLRNLIYLDISHTH 456 (635)
T ss_dssp EEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSC------------------------TTTTCTTCCEEECTTSC
T ss_pred hhhccccccccccccccccccccchhhhhcccccccccc------------------------ccccccccccccccccc
Confidence 666665533332233444455555555554433222211 11122334444444332
Q ss_pred CCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchhhhccccCCCCcccceeEEcccCcch-hhhhhc
Q 035550 1080 NIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPATLESLEVGNLPSSLKSLVVWSCSKLE-SIAERL 1158 (1385)
Q Consensus 1080 ~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~-~~~~~l 1158 (1385)
+.... + ......++|+.|++++|...+ ..|..|
T Consensus 457 -l~~~~---------------------------------------~------~~~~~~~~L~~L~Ls~N~~~~~~~~~~~ 490 (635)
T 4g8a_A 457 -TRVAF---------------------------------------N------GIFNGLSSLEVLKMAGNSFQENFLPDIF 490 (635)
T ss_dssp -CEECC---------------------------------------T------TTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred -ccccc---------------------------------------c------cccccchhhhhhhhhhcccccccCchhh
Confidence 11000 0 001112578888888887655 457788
Q ss_pred CCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeeccccCCCCCCcccCCCC-CCcc
Q 035550 1159 DNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIGGALPSLEEEDGLP-TNLQ 1237 (1385)
Q Consensus 1159 ~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~-~~L~ 1237 (1385)
..+++|++|+|++|.+.+..|..+..+++|++|+|++|.+.+..|..|.++++|++|+|++|.+.+..|..+..+ ++|+
T Consensus 491 ~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~ 570 (635)
T 4g8a_A 491 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 570 (635)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCC
T ss_pred hhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCC
Confidence 999999999999999777778888999999999999999877777889999999999999999988888888776 6899
Q ss_pred eeEecCCcchhhh
Q 035550 1238 SLNIWGNMEIWKS 1250 (1385)
Q Consensus 1238 ~L~L~~n~~~~~~ 1250 (1385)
+|+|++|+..+.+
T Consensus 571 ~L~L~~Np~~C~C 583 (635)
T 4g8a_A 571 FLNLTQNDFACTC 583 (635)
T ss_dssp EEECTTCCBCCSG
T ss_pred EEEeeCCCCcccC
Confidence 9999999866544
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=4.6e-29 Score=308.10 Aligned_cols=83 Identities=17% Similarity=0.093 Sum_probs=71.9
Q ss_pred eEEEEcCcccccccccccCCccccEEecccccccccc-hhhhccCCccEEecCCCcchhhhhhcccccCCCCeeecCCCC
Q 035550 533 RVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLP-ESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLDNLDTG 611 (1385)
Q Consensus 533 r~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 611 (1385)
++||+++|.++.+|..+. .+|++|+|++|.++.+| ..|.++++|++|++++|......|..|+++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N- 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN- 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-
Confidence 689999999999998887 89999999999999777 68999999999999998544445788999999999999999
Q ss_pred CcccccC
Q 035550 612 SLEEMPL 618 (1385)
Q Consensus 612 ~~~~lp~ 618 (1385)
.+..+|.
T Consensus 80 ~l~~lp~ 86 (520)
T 2z7x_B 80 KLVKISC 86 (520)
T ss_dssp CCCEEEC
T ss_pred ceeecCc
Confidence 5555554
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=3e-28 Score=302.97 Aligned_cols=87 Identities=17% Similarity=0.111 Sum_probs=70.5
Q ss_pred CceeEEEEcCcccccccccccCCccccEEecccccccccc-hhhhccCCccEEecCCCcchhhhhhcccccCCCCeeecC
Q 035550 530 QRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLP-ESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLDNL 608 (1385)
Q Consensus 530 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 608 (1385)
...++++++++.++.+|..+. .+|++|+|++|.|+.+| .+|+++++|++|++++|......|..|+++++|++|+++
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp --CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 345899999999999998775 79999999999999877 688999999999999985444446778999999999999
Q ss_pred CCCCcccccCC
Q 035550 609 DTGSLEEMPLG 619 (1385)
Q Consensus 609 ~~~~~~~lp~~ 619 (1385)
+| .+..+|..
T Consensus 109 ~N-~l~~lp~~ 118 (562)
T 3a79_B 109 HN-RLQNISCC 118 (562)
T ss_dssp TS-CCCEECSC
T ss_pred CC-cCCccCcc
Confidence 98 45566543
No 27
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=3.4e-28 Score=309.92 Aligned_cols=249 Identities=16% Similarity=0.081 Sum_probs=162.7
Q ss_pred ccccEEEeccCCCCCcCcccccCCCCccEEEeccCCCcccccCccCccccceEEeecCCCCCCCCcccccCCCCCcceEE
Q 035550 972 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEILN 1051 (1385)
Q Consensus 972 ~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 1051 (1385)
.+|+.|++.+|......+ ..+..|+.+++.+|. ....+....+++|+.|++++|......+.........+|+.++
T Consensus 328 ~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~-~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~ 403 (635)
T 4g8a_A 328 FGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNK-GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLD 403 (635)
T ss_dssp CCCSEEEEESCEESSCCC---CBCTTCCEEEEESCC-SCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEE
T ss_pred hhhhhhhcccccccCcCc---ccchhhhhccccccc-CCCCcccccccccccchhhccccccccccccchhhhhhhhhhh
Confidence 356666666665322211 234566667776663 3333344455666777766665322111111112334566666
Q ss_pred eecCCCCccccccCCCCCcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchhhhcc
Q 035550 1052 IEDCHSLTYIAAVQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPATLESL 1131 (1385)
Q Consensus 1052 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~l 1131 (1385)
+..+...........+++|+.+++.++......+. ..+
T Consensus 404 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~---------------------------------------~~~--- 441 (635)
T 4g8a_A 404 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF---------------------------------------SVF--- 441 (635)
T ss_dssp CCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSS---------------------------------------CTT---
T ss_pred ccccccccccccccccccccchhhhhccccccccc---------------------------------------ccc---
Confidence 66655433333333445555555544421111100 000
Q ss_pred ccCCCCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCcc-ccCCCCCCccCcceEEeccccCcccccccCCCCC
Q 035550 1132 EVGNLPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLV-SFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLT 1210 (1385)
Q Consensus 1132 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~-~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~ 1210 (1385)
.. .++++.++++.|.+....+..+..+++|+.|+|++|.... ..|..+..+++|++|+|++|.+.+..|..|.+++
T Consensus 442 --~~-l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~ 518 (635)
T 4g8a_A 442 --LS-LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 518 (635)
T ss_dssp --TT-CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred --cc-ccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCC
Confidence 11 1578889999998888888888899999999999998554 4677788899999999999998888888899999
Q ss_pred ccceeeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCC-CccceEEecccC
Q 035550 1211 SLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRF-SSLRYLLISGCD 1273 (1385)
Q Consensus 1211 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~ 1273 (1385)
+|++|+|++|.+.+..|..+..+++|++|+|++|++.. ..+..+..+ ++|++|+|++|.
T Consensus 519 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 519 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT----SKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB----CCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC----CCHHHHHhhhCcCCEEEeeCCC
Confidence 99999999998888878788889999999999998543 234567777 689999998863
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=9.5e-28 Score=286.83 Aligned_cols=397 Identities=23% Similarity=0.262 Sum_probs=198.7
Q ss_pred cCCceeEEEEcCcccccccccccCCccccEEeccccccc-ccchhhhccCCccEEecCCCcchhhhhhcccccCCCCeee
Q 035550 528 KLQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIR-TLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLD 606 (1385)
Q Consensus 528 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~-~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 606 (1385)
+.++|++|++++|.+..+|.+|++|++|++|++++|.+. .+|.+++++.+|+++++++|.. .+|++|+
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 458899999999999999999999999999999999988 8999999999998888877631 5678888
Q ss_pred cCCCCCcccccCCCCcccccccccceEecCCCCcChhhhcccccccceeEEeccCCCCCcchhHHhhcCCCCCCceEEEE
Q 035550 607 NLDTGSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGIRELKLLTHLRGTLNISKLENVKDIGDAKEAQLDGKKNLKVLKFQ 686 (1385)
Q Consensus 607 l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 686 (1385)
+++| .+..+|... + +|+.|+++
T Consensus 78 l~~~-~l~~lp~~~---~------------------------------------------------------~L~~L~l~ 99 (454)
T 1jl5_A 78 LNNL-GLSSLPELP---P------------------------------------------------------HLESLVAS 99 (454)
T ss_dssp CTTS-CCSCCCSCC---T------------------------------------------------------TCSEEECC
T ss_pred ecCC-ccccCCCCc---C------------------------------------------------------CCCEEEcc
Confidence 8888 455555311 1 23333333
Q ss_pred EccCCCCCCchhhhhHHhhcccCCCCCCccceEEeccCCCCCCcccCCCCcccccEEEeeCCCCCCCCCCCCCCCCCCeE
Q 035550 687 WTQSTNDLSSREAETEKDVLVMLKPHENLEQFCISGYEGKEFPTWLGDSSFSNLATLKFEDCGVCTTLPSVGQLPSLKHL 766 (1385)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L 766 (1385)
+|...+.+ ..+++|+.|+++++....+|.. .++|++|++++|.+.. +|.++.+++|++|
T Consensus 100 ~n~l~~lp---------------~~~~~L~~L~l~~n~l~~l~~~-----~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L 158 (454)
T 1jl5_A 100 CNSLTELP---------------ELPQSLKSLLVDNNNLKALSDL-----PPLLEYLGVSNNQLEK-LPELQNSSFLKII 158 (454)
T ss_dssp SSCCSSCC---------------CCCTTCCEEECCSSCCSCCCSC-----CTTCCEEECCSSCCSS-CCCCTTCTTCCEE
T ss_pred CCcCCccc---------------cccCCCcEEECCCCccCcccCC-----CCCCCEEECcCCCCCC-CcccCCCCCCCEE
Confidence 33322100 0013455555555555444432 1456666666665543 4556666666666
Q ss_pred EEcCCcCceEeCccccCCCCCCCCCCcceeecccccccccccccccCCccccCccccEEeecCCcCcccCCCCCCCCccE
Q 035550 767 EVRGMRRVKSLGSEFYGNDSPIPFPCLETLCFEDMQEWEDWIPLRSGQGVEGFRKLRELHIISCSKLQGTFPEHLPALEM 846 (1385)
Q Consensus 767 ~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~ 846 (1385)
++++|.. ..++. .+++|++|++++| .++ .+|.
T Consensus 159 ~l~~N~l-~~lp~--------------------------------------~~~~L~~L~L~~n-~l~-~l~~------- 190 (454)
T 1jl5_A 159 DVDNNSL-KKLPD--------------------------------------LPPSLEFIAAGNN-QLE-ELPE------- 190 (454)
T ss_dssp ECCSSCC-SCCCC--------------------------------------CCTTCCEEECCSS-CCS-SCCC-------
T ss_pred ECCCCcC-cccCC--------------------------------------CcccccEEECcCC-cCC-cCcc-------
Confidence 6665521 11100 1234555555544 333 2221
Q ss_pred EEEccccCccccCCCCCcccEEEEccCCchhhcccccccCCCcccccccCCccccccCcccccCCCccEEEEecccCccc
Q 035550 847 LVIGGCEELLVSVASLPALCKIEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKQRIPKLEELEIKNIKNETH 926 (1385)
Q Consensus 847 L~l~~c~~l~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 926 (1385)
T Consensus 191 -------------------------------------------------------------------------------- 190 (454)
T 1jl5_A 191 -------------------------------------------------------------------------------- 190 (454)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccchhhhccCccceEeecCCCCcccchhhhhhHHHHHhhhccccccEEEeccCCCCCcCcccccCCCCccEEEeccC
Q 035550 927 IWKSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKC 1006 (1385)
Q Consensus 927 i~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~ 1006 (1385)
+..+++|+.|++++| .++.++. .+++|++|++++|... .+| .+..+++|++|++++|
T Consensus 191 --------~~~l~~L~~L~l~~N-~l~~l~~------------~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 191 --------LQNLPFLTAIYADNN-SLKKLPD------------LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNN 247 (454)
T ss_dssp --------CTTCTTCCEEECCSS-CCSSCCC------------CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSS
T ss_pred --------ccCCCCCCEEECCCC-cCCcCCC------------CcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCC
Confidence 112222333333322 1111110 1146777777777644 666 3777888888888887
Q ss_pred CCcccccCccCccccceEEeecCCCCCCCCcccccCCCCCcceEEeecCCCCccccccCCCCCcceEEeccCCCCccccc
Q 035550 1007 SSLVSFPEVALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEILNIEDCHSLTYIAAVQLPPSLKQLEIYNCDNIRTLTV 1086 (1385)
Q Consensus 1007 ~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~ 1086 (1385)
.+..+|. .+++|+.|++++|. +..+|.. +++|+.|++++|.... ++ ..+++|+.|++++|. +..+
T Consensus 248 -~l~~l~~--~~~~L~~L~l~~N~-l~~l~~~-----~~~L~~L~ls~N~l~~-l~--~~~~~L~~L~l~~N~-l~~i-- 312 (454)
T 1jl5_A 248 -LLKTLPD--LPPSLEALNVRDNY-LTDLPEL-----PQSLTFLDVSENIFSG-LS--ELPPNLYYLNASSNE-IRSL-- 312 (454)
T ss_dssp -CCSSCCS--CCTTCCEEECCSSC-CSCCCCC-----CTTCCEEECCSSCCSE-ES--CCCTTCCEEECCSSC-CSEE--
T ss_pred -cCCcccc--cccccCEEECCCCc-ccccCcc-----cCcCCEEECcCCccCc-cc--CcCCcCCEEECcCCc-CCcc--
Confidence 4555554 34778888888877 4456542 2577777777776322 21 123566666666552 1111
Q ss_pred ccccccccccccccCCCccEEEeccCCCcccccccCCCchhhhccccCCCCcccceeEEcccCcchhhhhhcCCCCCCcE
Q 035550 1087 EEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPATLESLEVGNLPSSLKSLVVWSCSKLESIAERLDNNTSLET 1166 (1385)
Q Consensus 1087 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~ 1166 (1385)
..+|++|++|++++|.+.+ +|.. +++|++
T Consensus 313 -----------------------------------------------~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~ 341 (454)
T 1jl5_A 313 -----------------------------------------------CDLPPSLEELNVSNNKLIE-LPAL---PPRLER 341 (454)
T ss_dssp -----------------------------------------------CCCCTTCCEEECCSSCCSC-CCCC---CTTCCE
T ss_pred -----------------------------------------------cCCcCcCCEEECCCCcccc-cccc---CCcCCE
Confidence 1233577777887776654 4443 577888
Q ss_pred EeecCCCCccccCCCCCCccCcceEEeccccCcc--cccccCCCCCccceeeccccCCCCCCcccCCCCCCcceeEecCC
Q 035550 1167 ISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLE--ALPKGLHNLTSLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGN 1244 (1385)
Q Consensus 1167 L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~--~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n 1244 (1385)
|++++|. ++.+|. .+++|++|++++|++.+ .+|..+..+ +.|...+.+|. .+++|++|++++|
T Consensus 342 L~L~~N~-l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~---~~~~L~~L~ls~N 406 (454)
T 1jl5_A 342 LIASFNH-LAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPE---LPQNLKQLHVETN 406 (454)
T ss_dssp EECCSSC-CSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC-----------------------
T ss_pred EECCCCc-cccccc---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhccccccccc---ccCcCCEEECCCC
Confidence 8888887 445665 35678888888887766 566655433 23444455543 2466777777776
Q ss_pred cc
Q 035550 1245 ME 1246 (1385)
Q Consensus 1245 ~~ 1246 (1385)
+.
T Consensus 407 ~l 408 (454)
T 1jl5_A 407 PL 408 (454)
T ss_dssp --
T ss_pred cC
Confidence 64
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=7e-27 Score=290.70 Aligned_cols=102 Identities=30% Similarity=0.302 Sum_probs=85.2
Q ss_pred cccccccCCceeEEEEcCccccccc-ccccCCccccEEeccccccccc-chhhhccCCccEEecCCCcchhhhhhccccc
Q 035550 522 ILPKLFKLQRLRVFSLRGYYISELP-DSFGDLRYLRYLNLSLTEIRTL-PESVNKLYNLHTLLLEGCRRLKKLCADMGNL 599 (1385)
Q Consensus 522 ~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~l-P~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 599 (1385)
+|..+. ++|++|+|++|.|+.+| ..|+++++|++|+|++|+|+.+ |..|+++++|++|++++| .+..+|.. .+
T Consensus 46 ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l 120 (562)
T 3a79_B 46 VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--PM 120 (562)
T ss_dssp CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--CC
T ss_pred CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--cc
Confidence 444443 78999999999999886 6899999999999999999977 578999999999999997 57788887 89
Q ss_pred CCCCeeecCCCCCccccc--CCCCcccccccc
Q 035550 600 IKLHHLDNLDTGSLEEMP--LGIGKLTCLQTL 629 (1385)
Q Consensus 600 ~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L 629 (1385)
++|++|++++| .+..+| ..++++++|++|
T Consensus 121 ~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L 151 (562)
T 3a79_B 121 ASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFL 151 (562)
T ss_dssp TTCSEEECCSS-CCSBCCCCGGGGGCTTCCEE
T ss_pred ccCCEEECCCC-CccccCchHhhcccCcccEE
Confidence 99999999999 566654 457777777766
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=6e-26 Score=271.28 Aligned_cols=64 Identities=8% Similarity=0.028 Sum_probs=20.4
Q ss_pred cccccCCccccEEecccccccccchhhhccCCccEEecCCCcchhhhhhcccccCCCCeeecCCC
Q 035550 546 PDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLDNLDT 610 (1385)
Q Consensus 546 p~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 610 (1385)
|+.+. ..+|++|++++|.+..+|++|++|++|++|++++|.....+|..++++++|+.+++.+|
T Consensus 5 p~~~~-~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c 68 (454)
T 1jl5_A 5 PRNVS-NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHH
T ss_pred ccccc-cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhh
Confidence 34443 46777777777777777777777777777777766544455555555555555544433
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=4.5e-26 Score=272.58 Aligned_cols=98 Identities=21% Similarity=0.199 Sum_probs=83.9
Q ss_pred ccccccCCceeEEEEcCcccccccccccCCccccEEecccccccccchhhhccCCccEEecCCCcchhhhhhcccccCCC
Q 035550 523 LPKLFKLQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKL 602 (1385)
Q Consensus 523 ~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 602 (1385)
+..+.++++|++|++++|.++.+| .|+.+++|++|+|++|.++.+| ++.+++|++|++++| .+..+| ++++++|
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L 108 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKL 108 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTC
T ss_pred ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcC
Confidence 446688999999999999999987 6999999999999999999886 899999999999997 466665 8999999
Q ss_pred CeeecCCCCCcccccCCCCcccccccc
Q 035550 603 HHLDNLDTGSLEEMPLGIGKLTCLQTL 629 (1385)
Q Consensus 603 ~~L~l~~~~~~~~lp~~i~~L~~L~~L 629 (1385)
++|++++| .+..+| ++.+++|++|
T Consensus 109 ~~L~L~~N-~l~~l~--~~~l~~L~~L 132 (457)
T 3bz5_A 109 TYLNCDTN-KLTKLD--VSQNPLLTYL 132 (457)
T ss_dssp CEEECCSS-CCSCCC--CTTCTTCCEE
T ss_pred CEEECCCC-cCCeec--CCCCCcCCEE
Confidence 99999999 566665 6777777766
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=4e-25 Score=268.05 Aligned_cols=262 Identities=15% Similarity=0.078 Sum_probs=184.7
Q ss_pred ccccEEEeccCCCCCcCccc-ccCCCCccEEEeccCCCcccccC-ccCc--cccceEEeecCCCCCCCCcccc-------
Q 035550 972 CRLEYLRLSNCEGLVKLPQS-SLSLSSLREIEIYKCSSLVSFPE-VALP--SKLKKVKIRECDALKSLPEAWR------- 1040 (1385)
Q Consensus 972 ~~L~~L~Ls~~~~l~~l~~~-~~~l~~L~~L~L~~~~~l~~~~~-~~~~--~~L~~L~l~~~~~l~~~~~~~~------- 1040 (1385)
++|++|++++|......|.. +..+++|++|++++|......+. +..+ .+|+.|++++|. +..++..+.
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~ 207 (455)
T 3v47_A 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGN 207 (455)
T ss_dssp TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCC
T ss_pred ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCc-ccccchhhcccccccc
Confidence 57888888888877666765 78899999999999954443332 2222 678889998887 444433211
Q ss_pred cCCCCCcceEEeecCCCCccccc----cCCCCCcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcc
Q 035550 1041 CDTNSSLEILNIEDCHSLTYIAA----VQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLT 1116 (1385)
Q Consensus 1041 ~~~~~~L~~L~l~~~~~l~~~~~----~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 1116 (1385)
...+++|++|++++|......+. ....++|+.|++++|......
T Consensus 208 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------------------------------- 255 (455)
T 3v47_A 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS-------------------------------- 255 (455)
T ss_dssp TTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC--------------------------------
T ss_pred ccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc--------------------------------
Confidence 12335677777777764433221 112256666666665432211
Q ss_pred cccccCCCchhhhccccC-CCCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEecc
Q 035550 1117 CIFSKNELPATLESLEVG-NLPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITN 1195 (1385)
Q Consensus 1117 ~l~~~~~~~~~l~~l~~~-~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~ 1195 (1385)
+....++.... ..+. .-+++|+.|++++|.+.+..|..+.++++|++|+|++|.+.+..|..+..+++|++|+|++
T Consensus 256 --~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 332 (455)
T 3v47_A 256 --FGHTNFKDPDN-FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332 (455)
T ss_dssp --TTCCSSCCCCT-TTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred --cchhhhccCcc-cccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCC
Confidence 11111000000 0000 0125899999999999988899999999999999999997777788888999999999999
Q ss_pred ccCcccccccCCCCCccceeeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccC
Q 035550 1196 CKRLEALPKGLHNLTSLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCD 1273 (1385)
Q Consensus 1196 n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1273 (1385)
|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|++... .+..+..+++|+.|++++|.
T Consensus 333 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV----PDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp SCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSC
T ss_pred CccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccC----CHhHhccCCcccEEEccCCC
Confidence 998777788899999999999999998888788888999999999999985432 22456888999999999863
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=3.6e-25 Score=268.50 Aligned_cols=110 Identities=14% Similarity=-0.057 Sum_probs=88.4
Q ss_pred cccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeec
Q 035550 1138 SSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTI 1217 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L 1217 (1385)
++|++|++++|.+.+..|..|.++++|++|+|++|.+.+..|..+..+++|++|+|++|.+.+..|..+..+++|++|++
T Consensus 299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 378 (455)
T 3v47_A 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378 (455)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEEC
Confidence 57888888888877777778888888888888888865555667778888888888888877777888888888888888
Q ss_pred cccCCCCCCcccCCCCCCcceeEecCCcch
Q 035550 1218 GIGGALPSLEEEDGLPTNLQSLNIWGNMEI 1247 (1385)
Q Consensus 1218 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~ 1247 (1385)
++|.+.+..+..+..+++|++|++++|++.
T Consensus 379 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 379 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 888877665556678888888888888754
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=2.9e-25 Score=265.52 Aligned_cols=182 Identities=15% Similarity=0.142 Sum_probs=108.9
Q ss_pred cccEEEeccCCCCCcCcccccCCCCccEEEeccCCCcccccCccCccccceEEeecCCCCCCCCcccccCCCCCcceEEe
Q 035550 973 RLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEILNI 1052 (1385)
Q Consensus 973 ~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 1052 (1385)
+|++|++++|.... +| +..+++|++|++++| .++.+| ...+++|+.|+++++ +|+.|++
T Consensus 213 ~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N-~l~~~~-~~~l~~L~~L~l~~n----------------~L~~L~l 271 (457)
T 3bz5_A 213 QLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVN-PLTELD-VSTLSKLTTLHCIQT----------------DLLEIDL 271 (457)
T ss_dssp TCSEEECCSSCCSC-CC--CTTCTTCSEEECCSS-CCSCCC-CTTCTTCCEEECTTC----------------CCSCCCC
T ss_pred CCCEEECcCCcccc-cC--ccccCCCCEEEeeCC-cCCCcC-HHHCCCCCEEeccCC----------------CCCEEEC
Confidence 45555555554333 44 455566666666666 333333 234455555554432 3455555
Q ss_pred ecCCCCccccccCCCCCcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchhhhccc
Q 035550 1053 EDCHSLTYIAAVQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPATLESLE 1132 (1385)
Q Consensus 1053 ~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~l~ 1132 (1385)
++|.....++ ...+++|+.|++++|..++.++.. .++|+.+++++|
T Consensus 272 ~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~-------------~~~L~~L~l~~~-------------------- 317 (457)
T 3bz5_A 272 THNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQ-------------AAGITELDLSQN-------------------- 317 (457)
T ss_dssp TTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECT-------------TCCCSCCCCTTC--------------------
T ss_pred CCCccCCccc-ccccccCCEEECCCCcccceeccC-------------CCcceEechhhc--------------------
Confidence 5555544444 233456666677666665555421 234445544444
Q ss_pred cCCCCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCcc
Q 035550 1133 VGNLPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSL 1212 (1385)
Q Consensus 1133 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L 1212 (1385)
++|++|++++|.+.+. + +.++++|+.|++++|.+.+ ++.|..|++++|.+.+. ..+..|
T Consensus 318 -----~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l 376 (457)
T 3bz5_A 318 -----PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITM 376 (457)
T ss_dssp -----TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEEC
T ss_pred -----ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeec
Confidence 4677888888877663 2 7788888888888888443 24677777888776655 256677
Q ss_pred ceeeccccCCCCCCcccC
Q 035550 1213 QELTIGIGGALPSLEEED 1230 (1385)
Q Consensus 1213 ~~L~L~~n~~~~~~~~~~ 1230 (1385)
+.+++++|.+.+.+|..+
T Consensus 377 ~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 377 PKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp CCBCCBTTBEEEECCTTC
T ss_pred CccccccCcEEEEcChhH
Confidence 888888888888777543
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=2e-24 Score=261.40 Aligned_cols=86 Identities=15% Similarity=0.296 Sum_probs=71.0
Q ss_pred ccCCceeEEEEcCcccccccccccCCccccEEecccccccccchhhhccCCccEEecCCCcchhhhhhcccccCCCCeee
Q 035550 527 FKLQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLD 606 (1385)
Q Consensus 527 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 606 (1385)
..+++|+.|+++++.++.+|. +..+.+|++|+|++|.++.+|. ++++++|++|++++| .+..+|. ++++++|++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEE
T ss_pred hHhccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEE
Confidence 346788999999999988874 8889999999999999998887 899999999999987 4555655 88999999999
Q ss_pred cCCCCCccccc
Q 035550 607 NLDTGSLEEMP 617 (1385)
Q Consensus 607 l~~~~~~~~lp 617 (1385)
+++| .+..+|
T Consensus 119 L~~n-~l~~~~ 128 (466)
T 1o6v_A 119 LFNN-QITDID 128 (466)
T ss_dssp CCSS-CCCCCG
T ss_pred CCCC-CCCCCh
Confidence 9888 444443
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=1.6e-22 Score=244.72 Aligned_cols=349 Identities=15% Similarity=0.149 Sum_probs=227.1
Q ss_pred cCCCccEEEEecccCccccccccchhhhccCccceEeecCCCCcccchhhhhhHHHHHhhhccccccEEEeccCCCCCcC
Q 035550 909 RIPKLEELEIKNIKNETHIWKSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKL 988 (1385)
Q Consensus 909 ~l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~l~~l 988 (1385)
.+++++.|.+.++.- ..+ ..+..+++|+.|++++| .++.++. . ..+++|++|++++|.....
T Consensus 44 ~l~~l~~L~l~~~~i-~~l-----~~~~~l~~L~~L~Ls~n-~l~~~~~--~--------~~l~~L~~L~l~~n~l~~~- 105 (466)
T 1o6v_A 44 DLDQVTTLQADRLGI-KSI-----DGVEYLNNLTQINFSNN-QLTDITP--L--------KNLTKLVDILMNNNQIADI- 105 (466)
T ss_dssp HHHTCCEEECCSSCC-CCC-----TTGGGCTTCCEEECCSS-CCCCCGG--G--------TTCTTCCEEECCSSCCCCC-
T ss_pred HhccccEEecCCCCC-ccC-----cchhhhcCCCEEECCCC-ccCCchh--h--------hccccCCEEECCCCccccC-
Confidence 466777877765432 111 12567888888888876 4555443 1 1226888888888875443
Q ss_pred cccccCCCCccEEEeccCCCcccccCccCccccceEEeecCCCCCCCCcccccCCCCCcceEEeecCCCCccccccCCCC
Q 035550 989 PQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEILNIEDCHSLTYIAAVQLPP 1068 (1385)
Q Consensus 989 ~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 1068 (1385)
+. +..+++|++|++++| .++.++.+..+++|++|++++|. +..++. ...+++|+.|+++++ +.....+..++
T Consensus 106 ~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~~--~~~~~~~~~l~ 177 (466)
T 1o6v_A 106 TP-LANLTNLTGLTLFNN-QITDIDPLKNLTNLNRLELSSNT-ISDISA---LSGLTSLQQLSFGNQ--VTDLKPLANLT 177 (466)
T ss_dssp GG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEEEEEEE-ECCCGG---GTTCTTCSEEEEEES--CCCCGGGTTCT
T ss_pred hh-hcCCCCCCEEECCCC-CCCCChHHcCCCCCCEEECCCCc-cCCChh---hccCCcccEeecCCc--ccCchhhccCC
Confidence 33 778888888888888 45666667778888888888887 455553 245678888888642 33334456677
Q ss_pred CcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchhhhccccCCCCcccceeEEccc
Q 035550 1069 SLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPATLESLEVGNLPSSLKSLVVWSC 1148 (1385)
Q Consensus 1069 ~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~ 1148 (1385)
+|+.|++++|. +..++ ....+++|+.|++++|.-- .+ +. +. ..++|++|++++|
T Consensus 178 ~L~~L~l~~n~-l~~~~-----------~l~~l~~L~~L~l~~n~l~-~~------~~-~~------~l~~L~~L~l~~n 231 (466)
T 1o6v_A 178 TLERLDISSNK-VSDIS-----------VLAKLTNLESLIATNNQIS-DI------TP-LG------ILTNLDELSLNGN 231 (466)
T ss_dssp TCCEEECCSSC-CCCCG-----------GGGGCTTCSEEECCSSCCC-CC------GG-GG------GCTTCCEEECCSS
T ss_pred CCCEEECcCCc-CCCCh-----------hhccCCCCCEEEecCCccc-cc------cc-cc------ccCCCCEEECCCC
Confidence 88888888874 33331 1224567888888776421 11 00 11 1257888888888
Q ss_pred CcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeeccccCCCCCCcc
Q 035550 1149 SKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIGGALPSLEE 1228 (1385)
Q Consensus 1149 ~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~~~~ 1228 (1385)
.+.+. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+
T Consensus 232 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~- 304 (466)
T 1o6v_A 232 QLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP- 304 (466)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-
T ss_pred Ccccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-
Confidence 76553 246677888888888887554433 6677788888888887555433 7778888888888887655433
Q ss_pred cCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCCCCcccceeecccccccc
Q 035550 1229 EDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLPASLTSLWIFNFPNLE 1308 (1385)
Q Consensus 1229 ~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 1308 (1385)
++.+++|++|++++|+..... .+..+++|+.|++++|... .+ ..+..+++|+.|++++| .++
T Consensus 305 -~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~l~~n~l~--~~--------~~l~~l~~L~~L~l~~n-~l~ 366 (466)
T 1o6v_A 305 -ISNLKNLTYLTLYFNNISDIS------PVSSLTKLQRLFFYNNKVS--DV--------SSLANLTNINWLSAGHN-QIS 366 (466)
T ss_dssp -GGGCTTCSEEECCSSCCSCCG------GGGGCTTCCEEECCSSCCC--CC--------GGGTTCTTCCEEECCSS-CCC
T ss_pred -hcCCCCCCEEECcCCcCCCch------hhccCccCCEeECCCCccC--Cc--------hhhccCCCCCEEeCCCC-ccC
Confidence 667788888888888644321 1567788888888886421 11 12446677888888876 444
Q ss_pred cccccCCCCCCCCeEeccCCCCCCCCCC
Q 035550 1309 RLSSSIVDLQNLTELKLHNCPKLKYFPE 1336 (1385)
Q Consensus 1309 ~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 1336 (1385)
.++. +..+++|+.|++++|+ ++.+|.
T Consensus 367 ~~~~-~~~l~~L~~L~l~~n~-~~~~p~ 392 (466)
T 1o6v_A 367 DLTP-LANLTRITQLGLNDQA-WTNAPV 392 (466)
T ss_dssp BCGG-GTTCTTCCEEECCCEE-EECCCB
T ss_pred ccch-hhcCCCCCEEeccCCc-ccCCch
Confidence 4443 7778888888888864 666554
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1.1e-22 Score=236.58 Aligned_cols=189 Identities=18% Similarity=0.089 Sum_probs=93.2
Q ss_pred ccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeecc
Q 035550 1139 SLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIG 1218 (1385)
Q Consensus 1139 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~ 1218 (1385)
+|++|++++|...+..+ +..+++|++|++++|.+ ..++. +..+++|+.|++++|.+.+..+ +..+++|++|+++
T Consensus 156 ~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~ 229 (347)
T 4fmz_A 156 GLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI-EDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIG 229 (347)
T ss_dssp TCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC-CCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECC
T ss_pred CCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc-ccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEcc
Confidence 44444444444333222 44455555555555542 22222 3444555555555554333222 4455555555555
Q ss_pred ccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCCCCcccce
Q 035550 1219 IGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLPASLTS 1298 (1385)
Q Consensus 1219 ~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~ 1298 (1385)
+|.+....+ +..+++|++|++++|.+... ..+..+++|+.|++++|... .+ ..+..+++|+.
T Consensus 230 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~--~~--------~~~~~l~~L~~ 291 (347)
T 4fmz_A 230 NNKITDLSP--LANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQIS--DI--------SVLNNLSQLNS 291 (347)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCC--CC--------GGGGGCTTCSE
T ss_pred CCccCCCcc--hhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCCccC--CC--------hhhcCCCCCCE
Confidence 554333222 44455555555555543221 12445555555555554211 00 11234455666
Q ss_pred eecccccccccccccCCCCCCCCeEeccCCCCCCCCCCCCCCCccceeeecCCh
Q 035550 1299 LWIFNFPNLERLSSSIVDLQNLTELKLHNCPKLKYFPEKGLPSSLLQLQIVGCP 1352 (1385)
Q Consensus 1299 L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~ 1352 (1385)
|++++|..-...+..+..+++|++|++++|+ ++.++..+..++|+.|++++|+
T Consensus 292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp EECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC-
T ss_pred EECcCCcCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceeehhhhc
Confidence 6666653333344556677777777777764 6666554445677777777775
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=1.9e-21 Score=226.10 Aligned_cols=304 Identities=18% Similarity=0.189 Sum_probs=191.5
Q ss_pred hccCccceEeecCCCCcccchhhhhhHHHHHhhhccccccEEEeccCCCCCcCcccccCCCCccEEEeccCCCcccccCc
Q 035550 936 QDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEV 1015 (1385)
Q Consensus 936 ~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~ 1015 (1385)
..+++|+.|+++++ .+..++.- ..+++|++|++++|.. ..++. +..+++|++|++++| .++.++.+
T Consensus 41 ~~l~~L~~L~l~~~-~i~~~~~~----------~~~~~L~~L~l~~n~i-~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~ 106 (347)
T 4fmz_A 41 EELESITKLVVAGE-KVASIQGI----------EYLTNLEYLNLNGNQI-TDISP-LSNLVKLTNLYIGTN-KITDISAL 106 (347)
T ss_dssp HHHTTCSEEECCSS-CCCCCTTG----------GGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSS-CCCCCGGG
T ss_pred hhcccccEEEEeCC-ccccchhh----------hhcCCccEEEccCCcc-ccchh-hhcCCcCCEEEccCC-cccCchHH
Confidence 45566666666664 23333210 1125677777777653 33443 667777777777777 45556666
Q ss_pred cCccccceEEeecCCCCCCCCcccccCCCCCcceEEeecCCCCccccccCCCCCcceEEeccCCCCcccccccccccccc
Q 035550 1016 ALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEILNIEDCHSLTYIAAVQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSS 1095 (1385)
Q Consensus 1016 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~ 1095 (1385)
..+++|++|++++|. +..++. ...+++|+.|++++|.....++....+++|+.|++++|. +..++.
T Consensus 107 ~~l~~L~~L~l~~n~-i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--------- 172 (347)
T 4fmz_A 107 QNLTNLRELYLNEDN-ISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--------- 172 (347)
T ss_dssp TTCTTCSEEECTTSC-CCCCGG---GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG---------
T ss_pred cCCCcCCEEECcCCc-ccCchh---hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh---------
Confidence 666777777777766 444443 244566777777777666555555556666666666653 111100
Q ss_pred cccccCCCccEEEeccCCCcccccccCCCchhhhccccCCCCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCc
Q 035550 1096 SRRYTSSLLEELHISSCQSLTCIFSKNELPATLESLEVGNLPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNL 1175 (1385)
Q Consensus 1096 ~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l 1175 (1385)
+..+ ++|++|++++|.+.+..+ +..+++|+.|++++|.+.
T Consensus 173 --------------------------------~~~l------~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 173 --------------------------------IANL------TDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp --------------------------------GGGC------TTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred --------------------------------hccC------CCCCEEEccCCccccccc--ccCCCccceeecccCCCC
Confidence 1111 567777777776554333 667788888888888744
Q ss_pred cccCCCCCCccCcceEEeccccCcccccccCCCCCccceeeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcC
Q 035550 1176 VSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERG 1255 (1385)
Q Consensus 1176 ~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~ 1255 (1385)
...+ +..+++|++|++++|.+.+. +. +..+++|++|++++|.+.. ++ .+..+++|++|++++|.+...
T Consensus 213 ~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~~------ 280 (347)
T 4fmz_A 213 DITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD-IN-AVKDLTKLKMLNVGSNQISDI------ 280 (347)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCC------
T ss_pred CCch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC-Ch-hHhcCCCcCEEEccCCccCCC------
Confidence 4333 56677888888888875443 33 7778888888888876544 33 567788888888888864432
Q ss_pred ccCCCCCccceEEecccCCccccchhhhhhccCcCCCCcccceeecccccccccccccCCCCCCCCeEeccCCC
Q 035550 1256 RGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLPASLTSLWIFNFPNLERLSSSIVDLQNLTELKLHNCP 1329 (1385)
Q Consensus 1256 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 1329 (1385)
..+..+++|+.|++++|...... ...+..+++|+.|++++|+ ++.++. +..+++|++|++++|+
T Consensus 281 ~~~~~l~~L~~L~L~~n~l~~~~--------~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 281 SVLNNLSQLNSLFLNNNQLGNED--------MEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp GGGGGCTTCSEEECCSSCCCGGG--------HHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred hhhcCCCCCCEEECcCCcCCCcC--------hhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 24677788888888887421111 1123356788888888874 666665 8889999999999985
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=3.6e-21 Score=234.40 Aligned_cols=113 Identities=13% Similarity=0.002 Sum_probs=95.1
Q ss_pred cccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeec
Q 035550 1138 SSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTI 1217 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L 1217 (1385)
.+|++|++++|.+.+..+..+.++++|++|+|++|.+.+..+..+..+++|++|+|++|.+.+..|..+..+++|+.|++
T Consensus 224 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 303 (477)
T 2id5_A 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303 (477)
T ss_dssp CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEEC
T ss_pred ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEEC
Confidence 37888888888777665667889999999999999966666667888999999999999988888888999999999999
Q ss_pred cccCCCCCCcccCCCCCCcceeEecCCcchhhh
Q 035550 1218 GIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKS 1250 (1385)
Q Consensus 1218 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~ 1250 (1385)
++|.+....+..+..+++|++|++++|+....+
T Consensus 304 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 304 SGNQLTTLEESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp CSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred CCCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence 999877776667788899999999999866543
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=1.8e-21 Score=236.97 Aligned_cols=296 Identities=19% Similarity=0.123 Sum_probs=197.2
Q ss_pred ccccEEEeccCCCCCcCcccccCCCCccEEEeccCCCcccc-c-CccCccccceEEeecCCCCCCCCcccccCCCCCcce
Q 035550 972 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSF-P-EVALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEI 1049 (1385)
Q Consensus 972 ~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~-~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 1049 (1385)
+++++|+|++|......+..+..+++|++|+|++|. +..+ | .+..+++|++|++++|. ++.+|... ...+++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~ 108 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGV-FTGLSNLTK 108 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCTTS-STTCTTCCE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCc-CCccCccc-ccCCCCCCE
Confidence 577888888887666566778888888888888884 4433 3 36667788888888877 55555432 134567888
Q ss_pred EEeecCCCCcccc-ccCCCCCcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchhh
Q 035550 1050 LNIEDCHSLTYIA-AVQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPATL 1128 (1385)
Q Consensus 1050 L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l 1128 (1385)
|++++|......+ .+..+++|+.|+++++. +..+.. ..
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~---------------------------------------~~- 147 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISH---------------------------------------RA- 147 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECT---------------------------------------TS-
T ss_pred EECCCCccccCChhHccccccCCEEECCCCc-cceeCh---------------------------------------hh-
Confidence 8888776444322 23445667777776652 221110 00
Q ss_pred hccccCCCCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCC
Q 035550 1129 ESLEVGNLPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHN 1208 (1385)
Q Consensus 1129 ~~l~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~ 1208 (1385)
+..+ ++|++|++++|.+.+..+..+.++++|+.|+|++|.+.+..+..+..+++|++|++++|...+.+|.....
T Consensus 148 ----~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 222 (477)
T 2id5_A 148 ----FSGL-NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222 (477)
T ss_dssp ----STTC-TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT
T ss_pred ----ccCC-CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc
Confidence 1111 47777777777776666666777888888888888766655566777778888888888777777766666
Q ss_pred CCccceeeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccC
Q 035550 1209 LTSLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGT 1288 (1385)
Q Consensus 1209 l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 1288 (1385)
..+|+.|++++|.+....+..+..+++|++|+|++|.+... .+..+..+++|+.|+|++|... . -...
T Consensus 223 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~--~------~~~~ 290 (477)
T 2id5_A 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI----EGSMLHELLRLQEIQLVGGQLA--V------VEPY 290 (477)
T ss_dssp TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEE----CTTSCTTCTTCCEEECCSSCCS--E------ECTT
T ss_pred CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCcc----ChhhccccccCCEEECCCCccc--e------ECHH
Confidence 66788888887775544445567778888888888764322 2245677788888888876321 1 0123
Q ss_pred cCCCCcccceeecccccccccccc-cCCCCCCCCeEeccCCC
Q 035550 1289 ALPLPASLTSLWIFNFPNLERLSS-SIVDLQNLTELKLHNCP 1329 (1385)
Q Consensus 1289 ~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~ 1329 (1385)
.+..+++|+.|++++| .++.++. .+..+++|++|++++|+
T Consensus 291 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 291 AFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp TBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred HhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 4456677888888775 6777765 56788999999999876
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=2.4e-21 Score=228.92 Aligned_cols=305 Identities=14% Similarity=0.077 Sum_probs=155.3
Q ss_pred cCccceEeecCCCCcccchhhhhhHHHHHhhhccccccEEEeccCCCCCcCcccccCCCCccEEEeccCCCcccccC-cc
Q 035550 938 ICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE-VA 1016 (1385)
Q Consensus 938 l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~-~~ 1016 (1385)
+++++.|+++++ .++.++...+.. .++|++|++++|......+..+..+++|++|++++|......|. +.
T Consensus 44 l~~l~~l~l~~~-~l~~l~~~~~~~--------l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 114 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKLPAALLDS--------FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114 (390)
T ss_dssp GCCCSEEEEESC-EESEECTHHHHH--------CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCceEEEecCC-chhhCChhHhcc--------cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhc
Confidence 455556666553 344444332211 25667777776665444445666677777777777643222222 45
Q ss_pred CccccceEEeecCCCCCCCCcccccCCCCCcceEEeecCCCCcccc-ccCCCCCcceEEeccCCCCcccccccccccccc
Q 035550 1017 LPSKLKKVKIRECDALKSLPEAWRCDTNSSLEILNIEDCHSLTYIA-AVQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSS 1095 (1385)
Q Consensus 1017 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~ 1095 (1385)
.+++|++|++++|. ++.+|... ...+++|++|++++|......+ .+..+++|+.|++++|. ++.++.
T Consensus 115 ~l~~L~~L~L~~n~-l~~l~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~--------- 182 (390)
T 3o6n_A 115 NVPLLTVLVLERND-LSSLPRGI-FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDL--------- 182 (390)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTT-TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCCG---------
T ss_pred CCCCCCEEECCCCc-cCcCCHHH-hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCcccc---------
Confidence 56667777777665 44554432 1234566666666665332222 12334555555555542 111100
Q ss_pred cccccCCCccEEEeccCCCcccccccCCCchhhhccccCCCCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCc
Q 035550 1096 SRRYTSSLLEELHISSCQSLTCIFSKNELPATLESLEVGNLPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNL 1175 (1385)
Q Consensus 1096 ~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l 1175 (1385)
..+ ++|+.|++++|.+.+ +...++|++|++++|. +
T Consensus 183 --------------------------------------~~l-~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~-l 217 (390)
T 3o6n_A 183 --------------------------------------SLI-PSLFHANVSYNLLST-----LAIPIAVEELDASHNS-I 217 (390)
T ss_dssp --------------------------------------GGC-TTCSEEECCSSCCSE-----EECCSSCSEEECCSSC-C
T ss_pred --------------------------------------ccc-cccceeecccccccc-----cCCCCcceEEECCCCe-e
Confidence 000 345555555554322 1223456666666655 2
Q ss_pred cccCCCCCCccCcceEEeccccCcccccccCCCCCccceeeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcC
Q 035550 1176 VSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERG 1255 (1385)
Q Consensus 1176 ~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~ 1255 (1385)
..+|... .++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.. .+
T Consensus 218 ~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~ 288 (390)
T 3o6n_A 218 NVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-----LN 288 (390)
T ss_dssp CEEECCC--CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-----EE
T ss_pred eeccccc--cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-----cC
Confidence 3333322 24566666666654332 345556666666666665555555555556666666666654221 11
Q ss_pred ccCCCCCccceEEecccCCccccchhhhhhccCcCCCCcccceeecccccccccccccCCCCCCCCeEeccCCCCCCCCC
Q 035550 1256 RGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLPASLTSLWIFNFPNLERLSSSIVDLQNLTELKLHNCPKLKYFP 1335 (1385)
Q Consensus 1256 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 1335 (1385)
..+..+++|++|++++| .++.+|..+..+++|++|++++|+ ++.++
T Consensus 289 ~~~~~l~~L~~L~L~~n---------------------------------~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~ 334 (390)
T 3o6n_A 289 LYGQPIPTLKVLDLSHN---------------------------------HLLHVERNQPQFDRLENLYLDHNS-IVTLK 334 (390)
T ss_dssp CSSSCCTTCCEEECCSS---------------------------------CCCCCGGGHHHHTTCSEEECCSSC-CCCCC
T ss_pred cccCCCCCCCEEECCCC---------------------------------cceecCccccccCcCCEEECCCCc-cceeC
Confidence 22334444444444443 444555555566667777777653 66665
Q ss_pred CCCCCCccceeeecCCh
Q 035550 1336 EKGLPSSLLQLQIVGCP 1352 (1385)
Q Consensus 1336 ~~~~~~sL~~L~i~~c~ 1352 (1385)
. ...++|+.|++++||
T Consensus 335 ~-~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 335 L-STHHTLKNLTLSHND 350 (390)
T ss_dssp C-CTTCCCSEEECCSSC
T ss_pred c-hhhccCCEEEcCCCC
Confidence 2 334567777776665
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=4.6e-21 Score=226.48 Aligned_cols=152 Identities=14% Similarity=0.170 Sum_probs=114.9
Q ss_pred cCCCccEEEEecccCccccccccchhhhccCccceEeecCCCCcccchhhhhhHHHHHhhhccccccEEEeccCCCCCcC
Q 035550 909 RIPKLEELEIKNIKNETHIWKSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKL 988 (1385)
Q Consensus 909 ~l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~l~~l 988 (1385)
.+++++.|.+.+.. +...+...+..+++|+.|+++++ .++.++...+. ..++|++|++++|......
T Consensus 43 ~l~~l~~l~l~~~~----l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~ 109 (390)
T 3o6n_A 43 TLNNQKIVTFKNST----MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFA--------YAHTIQKLYMGFNAIRYLP 109 (390)
T ss_dssp GGCCCSEEEEESCE----ESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTT--------TCTTCCEEECCSSCCCCCC
T ss_pred ccCCceEEEecCCc----hhhCChhHhcccccCcEEECCCC-cccccChhhcc--------CCCCcCEEECCCCCCCcCC
Confidence 46788888887642 33355667889999999999986 46665543322 2379999999999977777
Q ss_pred cccccCCCCccEEEeccCCCcccccC--ccCccccceEEeecCCCCCCCCcccccCCCCCcceEEeecCCCCccccccCC
Q 035550 989 PQSSLSLSSLREIEIYKCSSLVSFPE--VALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEILNIEDCHSLTYIAAVQL 1066 (1385)
Q Consensus 989 ~~~~~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 1066 (1385)
|..+..+++|++|++++| .++.+|. +..+++|++|++++|......+..+ ..+++|++|++++|.... + ....
T Consensus 110 ~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~-~-~~~~ 184 (390)
T 3o6n_A 110 PHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--QATTSLQNLQLSSNRLTH-V-DLSL 184 (390)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--SSCTTCCEEECCSSCCSB-C-CGGG
T ss_pred HHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhc--cCCCCCCEEECCCCcCCc-c-cccc
Confidence 778999999999999999 5667775 5678999999999998544444434 456799999999987443 2 2345
Q ss_pred CCCcceEEeccC
Q 035550 1067 PPSLKQLEIYNC 1078 (1385)
Q Consensus 1067 ~~~L~~L~l~~~ 1078 (1385)
+++|+.|+++++
T Consensus 185 l~~L~~L~l~~n 196 (390)
T 3o6n_A 185 IPSLFHANVSYN 196 (390)
T ss_dssp CTTCSEEECCSS
T ss_pred ccccceeecccc
Confidence 678888988876
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=7e-21 Score=237.59 Aligned_cols=259 Identities=15% Similarity=0.065 Sum_probs=131.5
Q ss_pred cCccceEeecCCCCcccchhhhhhHHHHHhhhccccccEEEeccCCCCCcCcccccCCCCccEEEeccCCCcccccC--c
Q 035550 938 ICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--V 1015 (1385)
Q Consensus 938 l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~--~ 1015 (1385)
+.+++.++++++ .+..++...+.. +++|++|+|++|......|..+..+++|++|+|++|. +..++. +
T Consensus 50 l~~l~~l~l~~~-~l~~lp~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 119 (597)
T 3oja_B 50 LNNQKIVTFKNS-TMRKLPAALLDS--------FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVF 119 (597)
T ss_dssp GCCCSEEEESSC-EESEECTHHHHH--------CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred CCCceEEEeeCC-CCCCcCHHHHcc--------CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHH
Confidence 345555555553 344444332211 2567777777766555555566677777777777774 333332 4
Q ss_pred cCccccceEEeecCCCCCCCCcccccCCCCCcceEEeecCCCCcccc-ccCCCCCcceEEeccCCCCccccccccccccc
Q 035550 1016 ALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEILNIEDCHSLTYIA-AVQLPPSLKQLEIYNCDNIRTLTVEEGIQCSS 1094 (1385)
Q Consensus 1016 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~ 1094 (1385)
..+++|++|++++|. +..+|... ...+++|++|++++|......+ .+..+++|+.|++++|. ++.++.
T Consensus 120 ~~l~~L~~L~L~~n~-l~~l~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-------- 188 (597)
T 3oja_B 120 QNVPLLTVLVLERND-LSSLPRGI-FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDL-------- 188 (597)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTT-TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCCG--------
T ss_pred cCCCCCCEEEeeCCC-CCCCCHHH-hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcCh--------
Confidence 556677777777775 44554432 1344567777777665433332 23445566666666652 222110
Q ss_pred ccccccCCCccEEEeccCCCcccccccCCCchhhhccccCCCCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCC
Q 035550 1095 SSRRYTSSLLEELHISSCQSLTCIFSKNELPATLESLEVGNLPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGN 1174 (1385)
Q Consensus 1095 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~ 1174 (1385)
..+ ++|+.|++++|.+.+ +...++|+.|++++|.+
T Consensus 189 ----~~l------------------------------------~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l 223 (597)
T 3oja_B 189 ----SLI------------------------------------PSLFHANVSYNLLST-----LAIPIAVEELDASHNSI 223 (597)
T ss_dssp ----GGC------------------------------------TTCSEEECCSSCCSE-----EECCTTCSEEECCSSCC
T ss_pred ----hhh------------------------------------hhhhhhhcccCcccc-----ccCCchhheeeccCCcc
Confidence 011 344555555543322 12234555555555552
Q ss_pred ccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhc
Q 035550 1175 LVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIER 1254 (1385)
Q Consensus 1175 l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~ 1254 (1385)
..++.... ++|+.|+|++|.+.+ +..+..+++|+.|+|++|.+.+..|..++.+++|++|+|++|.+.. .
T Consensus 224 -~~~~~~~~--~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----l 293 (597)
T 3oja_B 224 -NVVRGPVN--VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-----L 293 (597)
T ss_dssp -CEEECSCC--SCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-----E
T ss_pred -cccccccC--CCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-----C
Confidence 22332222 355566666555443 2345555666666666655555555555555556666665554321 1
Q ss_pred CccCCCCCccceEEeccc
Q 035550 1255 GRGFHRFSSLRYLLISGC 1272 (1385)
Q Consensus 1255 ~~~l~~l~~L~~L~l~~~ 1272 (1385)
+..+..+++|+.|+|++|
T Consensus 294 ~~~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 294 NLYGQPIPTLKVLDLSHN 311 (597)
T ss_dssp ECSSSCCTTCCEEECCSS
T ss_pred CcccccCCCCcEEECCCC
Confidence 223344555555555554
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=6.5e-21 Score=237.89 Aligned_cols=305 Identities=16% Similarity=0.146 Sum_probs=209.6
Q ss_pred cCCCccEEEEecccCccccccccchhhhccCccceEeecCCCCcccchhhhhhHHHHHhhhccccccEEEeccCCCCCcC
Q 035550 909 RIPKLEELEIKNIKNETHIWKSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKL 988 (1385)
Q Consensus 909 ~l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~l~~l 988 (1385)
.+++++.+.+.+. .+...+...+..+++|+.|+++++ .++.++...+. .+++|++|+|++|......
T Consensus 49 ~l~~l~~l~l~~~----~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~ 115 (597)
T 3oja_B 49 TLNNQKIVTFKNS----TMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFA--------YAHTIQKLYMGFNAIRYLP 115 (597)
T ss_dssp GGCCCSEEEESSC----EESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTT--------TCTTCCEEECCSSCCCCCC
T ss_pred cCCCceEEEeeCC----CCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhc--------CCCCCCEEECCCCcCCCCC
Confidence 3566777776553 234456667889999999999986 46666543322 2379999999999977777
Q ss_pred cccccCCCCccEEEeccCCCcccccC--ccCccccceEEeecCCCCCCCCcccccCCCCCcceEEeecCCCCccccccCC
Q 035550 989 PQSSLSLSSLREIEIYKCSSLVSFPE--VALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEILNIEDCHSLTYIAAVQL 1066 (1385)
Q Consensus 989 ~~~~~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 1066 (1385)
|..+..+++|++|+|++| .+..+|. +..+++|++|++++|......|..+ ..+++|++|++++|.... ++ ...
T Consensus 116 ~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~-~~-~~~ 190 (597)
T 3oja_B 116 PHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--QATTSLQNLQLSSNRLTH-VD-LSL 190 (597)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECTTSCCSB-CC-GGG
T ss_pred HHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhh--hcCCcCcEEECcCCCCCC-cC-hhh
Confidence 778899999999999999 5566664 5778999999999998555445444 456799999999997443 22 445
Q ss_pred CCCcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchhhhccccCCCCcccceeEEc
Q 035550 1067 PPSLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPATLESLEVGNLPSSLKSLVVW 1146 (1385)
Q Consensus 1067 ~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~l~~~~~~~~L~~L~L~ 1146 (1385)
+++|+.|++++| .+..++. .++|+.|+++++.- ..+ ....+++|+.|+++
T Consensus 191 l~~L~~L~l~~n-~l~~l~~--------------~~~L~~L~ls~n~l-~~~--------------~~~~~~~L~~L~L~ 240 (597)
T 3oja_B 191 IPSLFHANVSYN-LLSTLAI--------------PIAVEELDASHNSI-NVV--------------RGPVNVELTILKLQ 240 (597)
T ss_dssp CTTCSEEECCSS-CCSEEEC--------------CTTCSEEECCSSCC-CEE--------------ECSCCSCCCEEECC
T ss_pred hhhhhhhhcccC-ccccccC--------------CchhheeeccCCcc-ccc--------------ccccCCCCCEEECC
Confidence 688999999887 3333322 23577777766541 111 11233567777777
Q ss_pred ccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeeccccCCCCCC
Q 035550 1147 SCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIGGALPSL 1226 (1385)
Q Consensus 1147 ~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~~ 1226 (1385)
+|.+.+. ..+..+++|+.|+|++|.+.+..|..+..+++|++|+|++|.+.+ +|..+..+++|+.|+|++|.+. .+
T Consensus 241 ~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i 316 (597)
T 3oja_B 241 HNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HV 316 (597)
T ss_dssp SSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CC
T ss_pred CCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-cc
Confidence 7766652 456677777777777777666666677777777777777776443 5666666777777777777654 45
Q ss_pred cccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEeccc
Q 035550 1227 EEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGC 1272 (1385)
Q Consensus 1227 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 1272 (1385)
|..++.+++|++|+|++|.+... .+..+++|+.|++++|
T Consensus 317 ~~~~~~l~~L~~L~L~~N~l~~~-------~~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 317 ERNQPQFDRLENLYLDHNSIVTL-------KLSTHHTLKNLTLSHN 355 (597)
T ss_dssp GGGHHHHTTCSEEECCSSCCCCC-------CCCTTCCCSEEECCSS
T ss_pred CcccccCCCCCEEECCCCCCCCc-------ChhhcCCCCEEEeeCC
Confidence 55566677777777777764321 2455666777777665
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=3.3e-21 Score=219.04 Aligned_cols=106 Identities=14% Similarity=0.084 Sum_probs=59.5
Q ss_pred ccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCcc-CcceEEeccccCcccccccCCCCCccceeec
Q 035550 1139 SLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCV-KLRMLAITNCKRLEALPKGLHNLTSLQELTI 1217 (1385)
Q Consensus 1139 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~-~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L 1217 (1385)
+|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+.+.+|..+..++ |+.|++
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~L 204 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL 204 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEEC
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEEC
Confidence 445555555555445555555555566666666555445555555554 556666666655555555555554 666666
Q ss_pred cccCCCCCCcccCCCCCCcceeEecCCc
Q 035550 1218 GIGGALPSLEEEDGLPTNLQSLNIWGNM 1245 (1385)
Q Consensus 1218 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 1245 (1385)
++|.+.+..|..+..+++|++|++++|.
T Consensus 205 s~N~l~~~~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 205 SRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp CSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred cCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence 6555555555555555555555555555
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=1.9e-19 Score=207.10 Aligned_cols=291 Identities=16% Similarity=0.126 Sum_probs=198.9
Q ss_pred CccceEeecCCCCcccchhhhhhHHHHHhhhccccccEEEeccCCCCCcCcccccCCCCccEEEeccCCCccccc-CccC
Q 035550 939 CSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFP-EVAL 1017 (1385)
Q Consensus 939 ~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~ 1017 (1385)
.+++.++++++ .++.++.. .++.|++|++++|......+..+..+++|++|++++|......| .+..
T Consensus 31 c~l~~l~~~~~-~l~~lp~~-----------~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (330)
T 1xku_A 31 CHLRVVQCSDL-GLEKVPKD-----------LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP 98 (330)
T ss_dssp EETTEEECTTS-CCCSCCCS-----------CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred CCCeEEEecCC-CccccCcc-----------CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcC
Confidence 35666776653 34444422 23688889999888665555578888999999998885443334 3667
Q ss_pred ccccceEEeecCCCCCCCCcccccCCCCCcceEEeecCCCCcccc-ccCCCCCcceEEeccCCCCccccccccccccccc
Q 035550 1018 PSKLKKVKIRECDALKSLPEAWRCDTNSSLEILNIEDCHSLTYIA-AVQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSSS 1096 (1385)
Q Consensus 1018 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~ 1096 (1385)
+++|++|++++|. ++.+|..+ .++|++|++++|......+ .+..+++|+.|++++|.. +..... ..
T Consensus 99 l~~L~~L~Ls~n~-l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~-------~~ 165 (330)
T 1xku_A 99 LVKLERLYLSKNQ-LKELPEKM----PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL-KSSGIE-------NG 165 (330)
T ss_dssp CTTCCEEECCSSC-CSBCCSSC----CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCC-CGGGBC-------TT
T ss_pred CCCCCEEECCCCc-CCccChhh----cccccEEECCCCcccccCHhHhcCCccccEEECCCCcC-CccCcC-------hh
Confidence 8889999998887 56777643 2588999998887544333 245677888888888743 211110 11
Q ss_pred ccccCCCccEEEeccCCCcccccccCCCchhhhccccCCCCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCcc
Q 035550 1097 RRYTSSLLEELHISSCQSLTCIFSKNELPATLESLEVGNLPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLV 1176 (1385)
Q Consensus 1097 ~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~ 1176 (1385)
....+++|+.|+++++. ++.+ | ..++++|++|++++|.+.+..|..+..+++|++|+|++|.+.+
T Consensus 166 ~~~~l~~L~~L~l~~n~-l~~l------~--------~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 166 AFQGMKKLSYIRIADTN-ITTI------P--------QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp GGGGCTTCCEEECCSSC-CCSC------C--------SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred hccCCCCcCEEECCCCc-cccC------C--------ccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence 12245678888887764 1111 1 1223688999999998887778888889999999999998666
Q ss_pred ccCCCCCCccCcceEEeccccCcccccccCCCCCccceeeccccCCCCCCcccCCC------CCCcceeEecCCcchhhh
Q 035550 1177 SFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIGGALPSLEEEDGL------PTNLQSLNIWGNMEIWKS 1250 (1385)
Q Consensus 1177 ~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~------~~~L~~L~L~~n~~~~~~ 1250 (1385)
..+..+..+++|++|+|++|.+ ..+|..+..+++|++|++++|++....+..+.. .++|+.|++++|+.....
T Consensus 231 ~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 231 VDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp ECTTTGGGSTTCCEEECCSSCC-SSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred eChhhccCCCCCCEEECCCCcC-ccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence 5666778888999999999974 478888888999999999988876655544432 367888888888754321
Q ss_pred hhhcCccCCCCCccceEEeccc
Q 035550 1251 MIERGRGFHRFSSLRYLLISGC 1272 (1385)
Q Consensus 1251 ~~~~~~~l~~l~~L~~L~l~~~ 1272 (1385)
..+..+..+++++.+++++|
T Consensus 310 --i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 310 --IQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp --SCGGGGTTCCCGGGEEC---
T ss_pred --cCccccccccceeEEEeccc
Confidence 23356677778888887775
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=2.4e-19 Score=206.33 Aligned_cols=179 Identities=13% Similarity=0.088 Sum_probs=108.4
Q ss_pred cccceeEEcccCcch--hhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCcccee
Q 035550 1138 SSLKSLVVWSCSKLE--SIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQEL 1215 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L 1215 (1385)
++|++|++++|.+.. ..+..+..+ +|++|++++|. ++.+|..+. ++|++|++++|.+.+..|..+..+++|+.|
T Consensus 147 ~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 222 (332)
T 2ft3_A 147 RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRL 222 (332)
T ss_dssp SSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCC
T ss_pred ccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 466667777666643 445566666 77777777777 444665444 577778888877666666677777788888
Q ss_pred eccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCc--CCCC
Q 035550 1216 TIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTA--LPLP 1293 (1385)
Q Consensus 1216 ~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~--~~~~ 1293 (1385)
++++|.+.+..+..+..+++|++|++++|++. ..|..+..+++|+.|++++|... .++. +.+... ....
T Consensus 223 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-----~lp~~l~~l~~L~~L~l~~N~l~--~~~~--~~~~~~~~~~~~ 293 (332)
T 2ft3_A 223 GLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-----RVPAGLPDLKLLQVVYLHTNNIT--KVGV--NDFCPVGFGVKR 293 (332)
T ss_dssp BCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-----BCCTTGGGCTTCCEEECCSSCCC--BCCT--TSSSCSSCCSSS
T ss_pred ECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-----ecChhhhcCccCCEEECCCCCCC--ccCh--hHcccccccccc
Confidence 88877766666666777777888888777643 23345677777888888776421 1111 000000 0113
Q ss_pred cccceeeccccccc--ccccccCCCCCCCCeEeccCCC
Q 035550 1294 ASLTSLWIFNFPNL--ERLSSSIVDLQNLTELKLHNCP 1329 (1385)
Q Consensus 1294 ~~L~~L~l~~~~~l--~~l~~~~~~l~~L~~L~l~~c~ 1329 (1385)
.+|+.|++.+++.. ...|..+..+++|+.|++++|.
T Consensus 294 ~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 294 AYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 45666666666433 2334456667777777776653
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=2.9e-19 Score=205.72 Aligned_cols=244 Identities=16% Similarity=0.110 Sum_probs=157.4
Q ss_pred ccccEEEeccCCCCCcCcccccCCCCccEEEeccCCCcccccCccCccccceEEeecCCCCCCCCcccccCCCCCcceEE
Q 035550 972 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEILN 1051 (1385)
Q Consensus 972 ~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 1051 (1385)
++|++|++++|......|..+..+++|++|++++| .++.+|.... ++|++|++++|. +..++... ...+++|+.|+
T Consensus 78 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~-~~L~~L~l~~n~-i~~~~~~~-~~~l~~L~~L~ 153 (332)
T 2ft3_A 78 QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP-SSLVELRIHDNR-IRKVPKGV-FSGLRNMNCIE 153 (332)
T ss_dssp TTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC-TTCCEEECCSSC-CCCCCSGG-GSSCSSCCEEE
T ss_pred CCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc-ccCCEEECCCCc-cCccCHhH-hCCCccCCEEE
Confidence 45666666666655555667777777777777777 4455554322 677777777776 34444321 13456777777
Q ss_pred eecCCCCc--ccc-ccCCCCCcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchhh
Q 035550 1052 IEDCHSLT--YIA-AVQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPATL 1128 (1385)
Q Consensus 1052 l~~~~~l~--~~~-~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l 1128 (1385)
+++|.... ..+ .+..+ +|+.|++++|. ++.++
T Consensus 154 l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~------------------------------------------- 188 (332)
T 2ft3_A 154 MGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIP------------------------------------------- 188 (332)
T ss_dssp CCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCC-------------------------------------------
T ss_pred CCCCccccCCCCcccccCC-ccCEEECcCCC-CCccC-------------------------------------------
Confidence 77765321 111 11112 45555554442 11111
Q ss_pred hccccCCCCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCC
Q 035550 1129 ESLEVGNLPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHN 1208 (1385)
Q Consensus 1129 ~~l~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~ 1208 (1385)
..++++|++|++++|.+.+..+..+..+++|++|+|++|.+.+..+..+..+++|++|++++|.+. .+|..+..
T Consensus 189 -----~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 189 -----KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp -----SSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred -----ccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 112257888888888888777778888899999999998866655567778889999999998744 78888888
Q ss_pred CCccceeeccccCCCCCCcccCCC------CCCcceeEecCCcchhhhhhhcCccCCCCCccceEEeccc
Q 035550 1209 LTSLQELTIGIGGALPSLEEEDGL------PTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGC 1272 (1385)
Q Consensus 1209 l~~L~~L~L~~n~~~~~~~~~~~~------~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 1272 (1385)
+++|+.|++++|++....+..+.. .++|+.|++++|+.... ...+..+..+++|+.+++++|
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~--~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW--EVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGG--GSCGGGGTTBCCSTTEEC---
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCccccc--ccCcccccccchhhhhhcccc
Confidence 899999999988876655544433 46788888888875422 123356777888888888775
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=5.7e-19 Score=203.15 Aligned_cols=291 Identities=14% Similarity=0.170 Sum_probs=176.0
Q ss_pred ccccEEEeccCCCCCcCcccccCCCCccEEEeccCCCcccccC--ccCccccceEEeecCCCCCCCCcccccCCCCCcce
Q 035550 972 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEI 1049 (1385)
Q Consensus 972 ~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 1049 (1385)
++++.++++++. +..+|..+. ++|++|++++|. ++.++. +..+++|++|++++|......|..+ ..+++|++
T Consensus 31 c~l~~l~~~~~~-l~~lp~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~ 104 (330)
T 1xku_A 31 CHLRVVQCSDLG-LEKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAF--APLVKLER 104 (330)
T ss_dssp EETTEEECTTSC-CCSCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT--TTCTTCCE
T ss_pred CCCeEEEecCCC-ccccCccCC--CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHh--cCCCCCCE
Confidence 478889988876 456665543 688999999884 555543 6678888888888887444445544 35567888
Q ss_pred EEeecCCCCccccccCCCCCcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchhhh
Q 035550 1050 LNIEDCHSLTYIAAVQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPATLE 1129 (1385)
Q Consensus 1050 L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~ 1129 (1385)
|++++|... .++. ...++|+.|++++|. ++.++ +..+.
T Consensus 105 L~Ls~n~l~-~l~~-~~~~~L~~L~l~~n~-l~~~~---------------------------------------~~~~~ 142 (330)
T 1xku_A 105 LYLSKNQLK-ELPE-KMPKTLQELRVHENE-ITKVR---------------------------------------KSVFN 142 (330)
T ss_dssp EECCSSCCS-BCCS-SCCTTCCEEECCSSC-CCBBC---------------------------------------HHHHT
T ss_pred EECCCCcCC-ccCh-hhcccccEEECCCCc-ccccC---------------------------------------HhHhc
Confidence 888777633 2222 122556666665552 11111 01111
Q ss_pred ccccCCCCcccceeEEcccCcch--hhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCC
Q 035550 1130 SLEVGNLPSSLKSLVVWSCSKLE--SIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLH 1207 (1385)
Q Consensus 1130 ~l~~~~~~~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~ 1207 (1385)
.+ ++|++|++++|.+.. ..+..+.++++|++|++++|. ++.+|..+. ++|++|++++|.+.+..|..+.
T Consensus 143 ~l------~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~ 213 (330)
T 1xku_A 143 GL------NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTELHLDGNKITKVDAASLK 213 (330)
T ss_dssp TC------TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEEECTTSCCCEECTGGGT
T ss_pred CC------ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc--ccCCEEECCCCcCCccCHHHhc
Confidence 11 467777777777643 456667778888888888877 445665544 5788888888877666677777
Q ss_pred CCCccceeeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhcc
Q 035550 1208 NLTSLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLG 1287 (1385)
Q Consensus 1208 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 1287 (1385)
.+++|+.|++++|.+.+..+..+..+++|++|++++|++. ..+..+..+++|++|++++|... .++. ..+.
T Consensus 214 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-----~lp~~l~~l~~L~~L~l~~N~i~--~~~~--~~f~ 284 (330)
T 1xku_A 214 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-----KVPGGLADHKYIQVVYLHNNNIS--AIGS--NDFC 284 (330)
T ss_dssp TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-----SCCTTTTTCSSCCEEECCSSCCC--CCCT--TSSS
T ss_pred CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-----cCChhhccCCCcCEEECCCCcCC--ccCh--hhcC
Confidence 8888888888888766666656677778888888887643 23345677777888888776421 1111 0000
Q ss_pred --CcCCCCcccceeecccccccc--cccccCCCCCCCCeEeccCC
Q 035550 1288 --TALPLPASLTSLWIFNFPNLE--RLSSSIVDLQNLTELKLHNC 1328 (1385)
Q Consensus 1288 --~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~l~~L~~L~l~~c 1328 (1385)
.......+|+.|++.+++... .-|..+..+++|+.+++++|
T Consensus 285 ~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 001123455555565544211 12334555555666655553
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=4.7e-20 Score=210.74 Aligned_cols=191 Identities=20% Similarity=0.306 Sum_probs=151.0
Q ss_pred cCCceeEEEEcCcccccccccccCCccccEEecccccccccchhhhccCCccEEecCCCcchhhhhhcccccCCCCeeec
Q 035550 528 KLQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLDN 607 (1385)
Q Consensus 528 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 607 (1385)
...++++|+|++|.++.+|..++++.+|++|+|++|.++.+|..++++++|++|++++| .+..+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence 45789999999999999999999999999999999999999999999999999999997 56689999999999999999
Q ss_pred CCCCCcccccCCCCcccccccccceEecCCCCcChhhhcccccccceeEEeccCCCCCcchhHHhhcCCCCCCceEEEEE
Q 035550 608 LDTGSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGIRELKLLTHLRGTLNISKLENVKDIGDAKEAQLDGKKNLKVLKFQW 687 (1385)
Q Consensus 608 ~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 687 (1385)
++|...+.+|..++...- ...+.++++|+.|++++
T Consensus 158 ~~n~~~~~~p~~~~~~~~---------------------------------------------~~~~~~l~~L~~L~L~~ 192 (328)
T 4fcg_A 158 RACPELTELPEPLASTDA---------------------------------------------SGEHQGLVNLQSLRLEW 192 (328)
T ss_dssp EEETTCCCCCSCSEEEC----------------------------------------------CCCEEESTTCCEEEEEE
T ss_pred CCCCCccccChhHhhccc---------------------------------------------hhhhccCCCCCEEECcC
Confidence 998777888876543100 01134566778888888
Q ss_pred ccCCCCCCchhhhhHHhhcccCCCCCCccceEEeccCCCCCCcccCCCCcccccEEEeeCCCCCCCCC-CCCCCCCCCeE
Q 035550 688 TQSTNDLSSREAETEKDVLVMLKPHENLEQFCISGYEGKEFPTWLGDSSFSNLATLKFEDCGVCTTLP-SVGQLPSLKHL 766 (1385)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L 766 (1385)
|.+... ...+..+++|+.|++++|....+|..+.. +++|+.|++++|.+.+.+| .++.+++|+.|
T Consensus 193 n~l~~l------------p~~l~~l~~L~~L~L~~N~l~~l~~~l~~--l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 258 (328)
T 4fcg_A 193 TGIRSL------------PASIANLQNLKSLKIRNSPLSALGPAIHH--LPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258 (328)
T ss_dssp ECCCCC------------CGGGGGCTTCCEEEEESSCCCCCCGGGGG--CTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred CCcCcc------------hHhhcCCCCCCEEEccCCCCCcCchhhcc--CCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence 876421 12255567888888888877777776643 7888888888888777777 57788888888
Q ss_pred EEcCCcCceEeC
Q 035550 767 EVRGMRRVKSLG 778 (1385)
Q Consensus 767 ~L~~~~~l~~i~ 778 (1385)
++++|.....++
T Consensus 259 ~L~~n~~~~~~p 270 (328)
T 4fcg_A 259 ILKDCSNLLTLP 270 (328)
T ss_dssp ECTTCTTCCBCC
T ss_pred ECCCCCchhhcc
Confidence 888876655544
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=2.5e-19 Score=204.62 Aligned_cols=229 Identities=21% Similarity=0.287 Sum_probs=120.2
Q ss_pred ccccEEEeccCCCCCcCcccccCCCCccEEEeccCCCcccccC-ccCccccceEEeecCCCCCCCCcccccCCCCCcceE
Q 035550 972 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE-VALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEIL 1050 (1385)
Q Consensus 972 ~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 1050 (1385)
+++++|++++|.. ..+|..+..+++|++|++++|. +..+|. +..+++|++|++++|. +..+|..+ ..+++|++|
T Consensus 81 ~~l~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l--~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASI--ASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCC-SSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGG--GGCTTCCEE
T ss_pred cceeEEEccCCCc-hhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHH--hcCcCCCEE
Confidence 6889999998875 4778888889999999999884 446664 6778888888888887 44777654 344577777
Q ss_pred EeecCCCCccccccCCCCCcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchhhhc
Q 035550 1051 NIEDCHSLTYIAAVQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPATLES 1130 (1385)
Q Consensus 1051 ~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~ 1130 (1385)
++++|.....++.. +....+.+ ....+++|+.|++++|. ++ .+|..+..
T Consensus 156 ~L~~n~~~~~~p~~-----~~~~~~~~-------------------~~~~l~~L~~L~L~~n~-l~------~lp~~l~~ 204 (328)
T 4fcg_A 156 SIRACPELTELPEP-----LASTDASG-------------------EHQGLVNLQSLRLEWTG-IR------SLPASIAN 204 (328)
T ss_dssp EEEEETTCCCCCSC-----SEEEC-CC-------------------CEEESTTCCEEEEEEEC-CC------CCCGGGGG
T ss_pred ECCCCCCccccChh-----Hhhccchh-------------------hhccCCCCCEEECcCCC-cC------cchHhhcC
Confidence 77776655443321 11100000 00001122222222211 00 11111111
Q ss_pred cccCCCCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCC
Q 035550 1131 LEVGNLPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLT 1210 (1385)
Q Consensus 1131 l~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~ 1210 (1385)
+ ++|++|++++|.+.+ +|..+..+++|++|+|++|...+.+|..+..+++|++|+|++|.+.+.+|..+.+++
T Consensus 205 l------~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~ 277 (328)
T 4fcg_A 205 L------QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277 (328)
T ss_dssp C------TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT
T ss_pred C------CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC
Confidence 1 344455555444432 233344455555555555554444554444455555555555554555554455555
Q ss_pred ccceeeccccCCCCCCcccCCCCCCcceeEecC
Q 035550 1211 SLQELTIGIGGALPSLEEEDGLPTNLQSLNIWG 1243 (1385)
Q Consensus 1211 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~ 1243 (1385)
+|+.|+|++|+..+.+|..++.+++|+.+++..
T Consensus 278 ~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 555555555555555554444444444444443
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=3.6e-20 Score=232.94 Aligned_cols=185 Identities=11% Similarity=0.070 Sum_probs=114.2
Q ss_pred cccceeEEcccCcchhhhhhcCCCCCCcEEeecC----------CCCccc--cCCCCCCccCcceEEeccccCccccccc
Q 035550 1138 SSLKSLVVWSCSKLESIAERLDNNTSLETISIDS----------CGNLVS--FPEGGLPCVKLRMLAITNCKRLEALPKG 1205 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~----------n~~l~~--~~~~~~~l~~L~~L~L~~n~~~~~lp~~ 1205 (1385)
++|++|+++++-..+.++..+.++++|++|+|++ |..++. ++.....+++|++|+++.|.+.+..+..
T Consensus 318 ~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~ 397 (592)
T 3ogk_B 318 PNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES 397 (592)
T ss_dssp TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHH
T ss_pred cCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHH
Confidence 5788888874433344555556778888888884 443432 2222234678888888777666555555
Q ss_pred CCC-CCccceeeccc---cCCCCCCc------ccCCCCCCcceeEecCCcc--hhhhhhhcCccCCCCCccceEEecccC
Q 035550 1206 LHN-LTSLQELTIGI---GGALPSLE------EEDGLPTNLQSLNIWGNME--IWKSMIERGRGFHRFSSLRYLLISGCD 1273 (1385)
Q Consensus 1206 l~~-l~~L~~L~L~~---n~~~~~~~------~~~~~~~~L~~L~L~~n~~--~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1273 (1385)
+.. +++|+.|++++ |+.++..| ..+..+++|+.|++++|.. ...... .....+++|+.|++++|.
T Consensus 398 l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~---~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 398 IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS---YIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH---HHHHSCTTCCEEEECSCC
T ss_pred HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH---HHHHhCccceEeeccCCC
Confidence 543 77888888873 33344322 2244578888888876542 111111 122347888888888874
Q ss_pred CccccchhhhhhccCcCCCCcccceeeccccccccc--ccccCCCCCCCCeEeccCCCCCCCC
Q 035550 1274 DDMVSFALEDKRLGTALPLPASLTSLWIFNFPNLER--LSSSIVDLQNLTELKLHNCPKLKYF 1334 (1385)
Q Consensus 1274 ~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~l~~L~~L~l~~c~~l~~l 1334 (1385)
. .+..+...+..+++|+.|++++|+ ++. ++..+..+++|++|+|++|+ ++..
T Consensus 475 l-------~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 475 E-------SDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp S-------SHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred C-------CHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence 1 112233334466888888888886 542 45555678899999999986 6654
No 53
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=2e-19 Score=204.32 Aligned_cols=246 Identities=13% Similarity=0.035 Sum_probs=131.6
Q ss_pred cccEEEeccCCCCC--cCcccccCCCCccEEEecc-CCCcccccC-ccCccccceEEeecCCCCCCCCcccccCCCCCcc
Q 035550 973 RLEYLRLSNCEGLV--KLPQSSLSLSSLREIEIYK-CSSLVSFPE-VALPSKLKKVKIRECDALKSLPEAWRCDTNSSLE 1048 (1385)
Q Consensus 973 ~L~~L~Ls~~~~l~--~l~~~~~~l~~L~~L~L~~-~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 1048 (1385)
+++.|++++|.... .+|..+..+++|++|++++ |.....+|. +..+++|++|++++|...+.+|..+ ..+++|+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~ 128 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--SQIKTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG--GGCTTCC
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH--hCCCCCC
Confidence 55666666665554 5566666666666666664 433334442 4555666666666666444555544 2344666
Q ss_pred eEEeecCCCCcccc-ccCCCCCcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchh
Q 035550 1049 ILNIEDCHSLTYIA-AVQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPAT 1127 (1385)
Q Consensus 1049 ~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~ 1127 (1385)
+|++++|.....++ .+..+++|+.|++++|.--..++. .
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~----------------------------------------~ 168 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD----------------------------------------S 168 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCG----------------------------------------G
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCH----------------------------------------H
Confidence 66666665432222 234456666666666532112211 0
Q ss_pred hhccccCCCCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCC
Q 035550 1128 LESLEVGNLPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLH 1207 (1385)
Q Consensus 1128 l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~ 1207 (1385)
+..++++|++|++++|.+.+.+|..+..++ |++|++++|.+.+..|..+..+++|++|+|++|.+.+.+|. +.
T Consensus 169 -----l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~ 241 (313)
T 1ogq_A 169 -----YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VG 241 (313)
T ss_dssp -----GGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CC
T ss_pred -----HhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-cc
Confidence 111123555666666655555555555554 66666666655555555555566666666666655444443 55
Q ss_pred CCCccceeeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEeccc
Q 035550 1208 NLTSLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGC 1272 (1385)
Q Consensus 1208 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 1272 (1385)
.+++|++|++++|.+.+.+|..+..+++|++|++++|++... .|. ..++++|+.+++++|
T Consensus 242 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~----ip~-~~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE----IPQ-GGNLQRFDVSAYANN 301 (313)
T ss_dssp CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE----CCC-STTGGGSCGGGTCSS
T ss_pred ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc----CCC-CccccccChHHhcCC
Confidence 556666666666665555555555566666666666653321 111 245566666666664
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=1.7e-17 Score=203.73 Aligned_cols=256 Identities=26% Similarity=0.316 Sum_probs=156.4
Q ss_pred ccccEEEeccCCCCCcCcccccCCCCccEEEeccCCCcccccCccCccccceEEeecCCCCCCCCcccccCCCCCcceEE
Q 035550 972 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEILN 1051 (1385)
Q Consensus 972 ~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 1051 (1385)
.+++.|++++|.. +.+|..+. ++|++|++++| .++.+|. .+++|++|++++|. ++.+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L-~~lp~~l~--~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCC-SCCCSCCC--TTCSEEEECSC-CCSCCCC--CCTTCCEEEECSCC-CSCCCC-----CCTTCCEEE
T ss_pred CCCcEEEecCCCc-CccChhhC--CCCcEEEecCC-CCCCCCC--cCCCCCEEEcCCCc-CCcCCC-----CCCCCCEEE
Confidence 3588999998874 47776664 78999999998 5667776 67889999999987 667775 457899999
Q ss_pred eecCCCCccccccCCCCCcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchhhhcc
Q 035550 1052 IEDCHSLTYIAAVQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPATLESL 1131 (1385)
Q Consensus 1052 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~l 1131 (1385)
+++|.... ++. .+++|+.|++++|. ++.++.
T Consensus 108 Ls~N~l~~-l~~--~l~~L~~L~L~~N~-l~~lp~--------------------------------------------- 138 (622)
T 3g06_A 108 IFSNPLTH-LPA--LPSGLCKLWIFGNQ-LTSLPV--------------------------------------------- 138 (622)
T ss_dssp ECSCCCCC-CCC--CCTTCCEEECCSSC-CSCCCC---------------------------------------------
T ss_pred CcCCcCCC-CCC--CCCCcCEEECCCCC-CCcCCC---------------------------------------------
Confidence 98886333 333 56678888877763 333321
Q ss_pred ccCCCCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCc
Q 035550 1132 EVGNLPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTS 1211 (1385)
Q Consensus 1132 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~ 1211 (1385)
.+++|++|++++|.+.+ +|. .+++|+.|++++|. +..+| ..+++|+.|++++|.+. .+|. .+++
T Consensus 139 ----~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~-l~~l~---~~~~~L~~L~Ls~N~l~-~l~~---~~~~ 202 (622)
T 3g06_A 139 ----LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQ-LTSLP---MLPSGLQELSVSDNQLA-SLPT---LPSE 202 (622)
T ss_dssp ----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC-CSCCC---CCCTTCCEEECCSSCCS-CCCC---CCTT
T ss_pred ----CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCC-CCCCc---ccCCCCcEEECCCCCCC-CCCC---ccch
Confidence 01355555555554432 222 23456666666655 33344 23355666666666533 3433 2355
Q ss_pred cceeeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCC
Q 035550 1212 LQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALP 1291 (1385)
Q Consensus 1212 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~ 1291 (1385)
|+.|++++|.+. .+|. .+++|++|++++|.+.. .+ ..+++|+.|++++|. +.....
T Consensus 203 L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-----lp---~~l~~L~~L~Ls~N~------------L~~lp~ 258 (622)
T 3g06_A 203 LYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-----LP---VLPSELKELMVSGNR------------LTSLPM 258 (622)
T ss_dssp CCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-----CC---CCCTTCCEEECCSSC------------CSCCCC
T ss_pred hhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-----CC---CCCCcCcEEECCCCC------------CCcCCc
Confidence 666666655533 3332 24566666666665321 11 344566666666642 222222
Q ss_pred CCcccceeecccccccccccccCCCCCCCCeEeccCCC
Q 035550 1292 LPASLTSLWIFNFPNLERLSSSIVDLQNLTELKLHNCP 1329 (1385)
Q Consensus 1292 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 1329 (1385)
.+++|+.|++++| .++.+|..+.++++|+.|+|++|+
T Consensus 259 ~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 259 LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 4566777777775 666777777778888888888775
No 55
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=1.7e-20 Score=227.88 Aligned_cols=209 Identities=20% Similarity=0.128 Sum_probs=143.1
Q ss_pred cccceeEEcccCcchh----hhhhcCCCCCCcEEeecCCCCccc----c-CCCCCCccCcceEEeccccCccc----ccc
Q 035550 1138 SSLKSLVVWSCSKLES----IAERLDNNTSLETISIDSCGNLVS----F-PEGGLPCVKLRMLAITNCKRLEA----LPK 1204 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~L~~n~~l~~----~-~~~~~~l~~L~~L~L~~n~~~~~----lp~ 1204 (1385)
++|++|++++|.+... ++..+..+++|++|++++|.+... + +..+..+++|++|++++|.+... ++.
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 278 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence 4889999999987763 577788889999999999974432 1 22233578999999999976553 566
Q ss_pred cCCCCCccceeeccccCCCCCCcccC-----CCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccc
Q 035550 1205 GLHNLTSLQELTIGIGGALPSLEEED-----GLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSF 1279 (1385)
Q Consensus 1205 ~l~~l~~L~~L~L~~n~~~~~~~~~~-----~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 1279 (1385)
.+..+++|++|++++|.+....+..+ ...++|++|++++|.+........+..+..+++|++|++++|...-.
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~-- 356 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA-- 356 (461)
T ss_dssp HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH--
T ss_pred HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc--
Confidence 77788999999999997643322111 23469999999999866544333445667889999999999742111
Q ss_pred hhhhhhccCcCC-CCcccceeecccccccc-----cccccCCCCCCCCeEeccCCCCCCCCCCC----C---CCCcccee
Q 035550 1280 ALEDKRLGTALP-LPASLTSLWIFNFPNLE-----RLSSSIVDLQNLTELKLHNCPKLKYFPEK----G---LPSSLLQL 1346 (1385)
Q Consensus 1280 ~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~-----~l~~~~~~l~~L~~L~l~~c~~l~~l~~~----~---~~~sL~~L 1346 (1385)
.. ..+...+. ..++|++|++++| .++ .+|..+..+++|++|++++|+ ++..... . ...+|+.|
T Consensus 357 ~~--~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~~~~L~~L 432 (461)
T 1z7x_W 357 GV--RELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLLEQL 432 (461)
T ss_dssp HH--HHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCCCEE
T ss_pred cH--HHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC-CCHHHHHHHHHHhccCCcchhhe
Confidence 00 11111122 2568999999998 565 688888889999999999984 6542110 0 12367777
Q ss_pred eecCCh
Q 035550 1347 QIVGCP 1352 (1385)
Q Consensus 1347 ~i~~c~ 1352 (1385)
++.++.
T Consensus 433 ~~~~~~ 438 (461)
T 1z7x_W 433 VLYDIY 438 (461)
T ss_dssp ECTTCC
T ss_pred eecccc
Confidence 766653
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=5.8e-18 Score=196.71 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=21.9
Q ss_pred CCcccceeecccccccccccccC-CCCCCCCeEeccCCC
Q 035550 1292 LPASLTSLWIFNFPNLERLSSSI-VDLQNLTELKLHNCP 1329 (1385)
Q Consensus 1292 ~~~~L~~L~l~~~~~l~~l~~~~-~~l~~L~~L~l~~c~ 1329 (1385)
.+++|+.|++++| .++.+|..+ ..+++|++|++++|+
T Consensus 275 ~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 275 QISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 3444555555543 455666653 667777777777765
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=7.5e-19 Score=200.34 Aligned_cols=219 Identities=13% Similarity=0.084 Sum_probs=124.3
Q ss_pred hccccccEEEeccCCCCCcCcccccCCCCccEEEeccCCCcccccCccCccccceEEeecCCCCCCCCcccccCCCCCcc
Q 035550 969 ELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKVKIRECDALKSLPEAWRCDTNSSLE 1048 (1385)
Q Consensus 969 ~~~~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 1048 (1385)
..+++|++|+|++|......|..+..+++|++|++++|. +...+.+..+++|++|++++|. ++.++. .++|+
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n~-l~~l~~------~~~L~ 102 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELLV------GPSIE 102 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEECCSSE-EEEEEE------CTTCC
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEECcCCc-cccccC------CCCcC
Confidence 344689999999998776666788899999999999984 4444447777888888888876 444432 14667
Q ss_pred eEEeecCCCCccccccCCCCCcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchhh
Q 035550 1049 ILNIEDCHSLTYIAAVQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPATL 1128 (1385)
Q Consensus 1049 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l 1128 (1385)
+|++++|......+ ..+++|+.|++++|. ++.++. ..+
T Consensus 103 ~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~-l~~~~~---------------------------------------~~~ 140 (317)
T 3o53_A 103 TLHAANNNISRVSC--SRGQGKKNIYLANNK-ITMLRD---------------------------------------LDE 140 (317)
T ss_dssp EEECCSSCCSEEEE--CCCSSCEEEECCSSC-CCSGGG---------------------------------------BCT
T ss_pred EEECCCCccCCcCc--cccCCCCEEECCCCC-CCCccc---------------------------------------hhh
Confidence 77776665332221 113344444444442 111100 000
Q ss_pred hccccCCCCcccceeEEcccCcchhhhhhc-CCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCC
Q 035550 1129 ESLEVGNLPSSLKSLVVWSCSKLESIAERL-DNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLH 1207 (1385)
Q Consensus 1129 ~~l~~~~~~~~L~~L~L~~~~~~~~~~~~l-~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~ 1207 (1385)
.. .++|++|++++|.+.+..+..+ ..+++|++|+|++|.+. .++.. ..+++|++|+|++|.+. .+|..+.
T Consensus 141 ~~------l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~ 211 (317)
T 3o53_A 141 GC------RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQ-VVFAKLKTLDLSSNKLA-FMGPEFQ 211 (317)
T ss_dssp GG------GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEECC-CCCTTCCEEECCSSCCC-EECGGGG
T ss_pred hc------cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc-ccccc-cccccCCEEECCCCcCC-cchhhhc
Confidence 00 0356666666665555544444 34566666666666633 23322 23556666666666533 3333455
Q ss_pred CCCccceeeccccCCCCCCcccCCCCCCcceeEecCCcch
Q 035550 1208 NLTSLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEI 1247 (1385)
Q Consensus 1208 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~ 1247 (1385)
.+++|+.|++++|.+. .+|..+..+++|+.|++++|+..
T Consensus 212 ~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 6666666666666543 34445555566666666666543
No 58
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=9.8e-20 Score=228.94 Aligned_cols=411 Identities=14% Similarity=0.098 Sum_probs=256.5
Q ss_pred cccCCCccEEEEecccCccccccc-----------cchhhhccCccceEeecCCCCcccchhhhhhHHHHHhhh-ccccc
Q 035550 907 KQRIPKLEELEIKNIKNETHIWKS-----------HNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCE-LSCRL 974 (1385)
Q Consensus 907 ~~~l~~L~~L~l~~~~~~~~i~~~-----------~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~-~~~~L 974 (1385)
...+++|++|.+.+++........ .......+++|++|++++| .++..... .+.. ++.+|
T Consensus 69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~-------~l~~~~~~~L 140 (592)
T 3ogk_B 69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLD-------RLAKARADDL 140 (592)
T ss_dssp HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHH-------HHHHHHGGGC
T ss_pred HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHH-------HHHHhccccC
Confidence 345788999999887654321111 1123347899999999987 33322111 1222 22349
Q ss_pred cEEEeccCCCCC--cCcccccCCCCccEEEeccCCCccc----ccC-ccCccccceEEeecCCCC----CCCCcccccCC
Q 035550 975 EYLRLSNCEGLV--KLPQSSLSLSSLREIEIYKCSSLVS----FPE-VALPSKLKKVKIRECDAL----KSLPEAWRCDT 1043 (1385)
Q Consensus 975 ~~L~Ls~~~~l~--~l~~~~~~l~~L~~L~L~~~~~l~~----~~~-~~~~~~L~~L~l~~~~~l----~~~~~~~~~~~ 1043 (1385)
++|+|++|.... .++.....+++|++|+|++|..... ++. ...+++|+.|++++|... ..++..+ ..
T Consensus 141 ~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~--~~ 218 (592)
T 3ogk_B 141 ETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA--RN 218 (592)
T ss_dssp CEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH--HH
T ss_pred cEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH--hh
Confidence 999999987322 1233345789999999999943211 111 235688999999988743 1222211 24
Q ss_pred CCCcceEEeecCCCCccccccCCCCCcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCC
Q 035550 1044 NSSLEILNIEDCHSLTYIAAVQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNE 1123 (1385)
Q Consensus 1044 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~ 1123 (1385)
+++|++|++++|...........+++|+.|+++.+....... ........+++|+.+.++++. ...
T Consensus 219 ~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-------~~~~~l~~~~~L~~L~l~~~~-------~~~ 284 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMP-------EKYMNLVFPRKLCRLGLSYMG-------PNE 284 (592)
T ss_dssp CTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCT-------TSSSCCCCCTTCCEEEETTCC-------TTT
T ss_pred CCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchH-------HHHHHhhccccccccCccccc-------hhH
Confidence 578999999998755433344557889999998653221110 001122335678888877642 122
Q ss_pred CchhhhccccCCCCcccceeEEcccCcchhh-hhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEecc-------
Q 035550 1124 LPATLESLEVGNLPSSLKSLVVWSCSKLESI-AERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITN------- 1195 (1385)
Q Consensus 1124 ~~~~l~~l~~~~~~~~L~~L~L~~~~~~~~~-~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~------- 1195 (1385)
++..+..+ ++|++|++++|.+.... +..+.++++|++|++++|-....++.....+++|++|+|++
T Consensus 285 l~~~~~~~------~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~ 358 (592)
T 3ogk_B 285 MPILFPFA------AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGM 358 (592)
T ss_dssp GGGGGGGG------GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTT
T ss_pred HHHHHhhc------CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCcccccc
Confidence 33333333 69999999999965543 45578999999999995432233444345678999999994
Q ss_pred ---ccCccc--ccccCCCCCccceeeccccCCCCCCcccCCC-CCCcceeEecC----Ccchhhhh-hhcCccCCCCCcc
Q 035550 1196 ---CKRLEA--LPKGLHNLTSLQELTIGIGGALPSLEEEDGL-PTNLQSLNIWG----NMEIWKSM-IERGRGFHRFSSL 1264 (1385)
Q Consensus 1196 ---n~~~~~--lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~-~~~L~~L~L~~----n~~~~~~~-~~~~~~l~~l~~L 1264 (1385)
|..++. ++.....+++|++|+++.|.+....+..++. +++|++|++++ |....... ...+..+.++++|
T Consensus 359 ~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L 438 (592)
T 3ogk_B 359 EDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438 (592)
T ss_dssp SSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC
T ss_pred ccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCC
Confidence 543332 2233456899999999777665554444544 88999999973 33221000 0011225678999
Q ss_pred ceEEecccCCccccchhhhhhccCcCCCCcccceeeccccccccc--ccccCCCCCCCCeEeccCCCCCCC--CCCC-CC
Q 035550 1265 RYLLISGCDDDMVSFALEDKRLGTALPLPASLTSLWIFNFPNLER--LSSSIVDLQNLTELKLHNCPKLKY--FPEK-GL 1339 (1385)
Q Consensus 1265 ~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~l~~L~~L~l~~c~~l~~--l~~~-~~ 1339 (1385)
+.|++++|...+. +..+......+++|+.|++++|. ++. ++..+..+++|++|+|++|+ ++. ++.. ..
T Consensus 439 ~~L~L~~~~~~l~-----~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~ 511 (592)
T 3ogk_B 439 RRFAFYLRQGGLT-----DLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTK 511 (592)
T ss_dssp CEEEEECCGGGCC-----HHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHH
T ss_pred CEEEEecCCCCcc-----HHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHh
Confidence 9999987643111 12222223357889999999874 543 56667889999999999997 643 2221 12
Q ss_pred CCccceeeecCChhhH
Q 035550 1340 PSSLLQLQIVGCPLMK 1355 (1385)
Q Consensus 1340 ~~sL~~L~i~~c~~l~ 1355 (1385)
.++|+.|++++|. ++
T Consensus 512 l~~L~~L~ls~n~-it 526 (592)
T 3ogk_B 512 LPSLRYLWVQGYR-AS 526 (592)
T ss_dssp CSSCCEEEEESCB-CC
T ss_pred cCccCeeECcCCc-CC
Confidence 4789999999998 44
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=193.60 Aligned_cols=204 Identities=19% Similarity=0.113 Sum_probs=147.4
Q ss_pred cccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCC--CCCCccCcceEEeccccCcccc-cccCCCCCccce
Q 035550 1138 SSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPE--GGLPCVKLRMLAITNCKRLEAL-PKGLHNLTSLQE 1214 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~--~~~~l~~L~~L~L~~n~~~~~l-p~~l~~l~~L~~ 1214 (1385)
++|++|++++|.+.+..+..+.++++|++|++++|.+ +.+|. .+..+++|++|++++|...+.+ |..+.++++|++
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178 (353)
T ss_dssp TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence 5788888888877766666688888999999998884 45554 6778889999999988544444 567888899999
Q ss_pred eeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCCCCc
Q 035550 1215 LTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLPA 1294 (1385)
Q Consensus 1215 L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~ 1294 (1385)
|++++|.+.+..|..+..+++|++|++++|....... ..+..+++|+.|++++|......+.. + .......
T Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~----l-~~~~~~~ 249 (353)
T 2z80_A 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE----IFVDVTSSVECLELRDTDLDTFHFSE----L-STGETNS 249 (353)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHH----HHHHHTTTEEEEEEESCBCTTCCCC-----------CCC
T ss_pred EECCCCCcCccCHHHHhccccCCeecCCCCccccchh----hhhhhcccccEEECCCCccccccccc----c-ccccccc
Confidence 9999888877778888888899999999887533221 23455788999999987422111100 0 0112345
Q ss_pred ccceeeccccc----ccccccccCCCCCCCCeEeccCCCCCCCCCCCC--CCCccceeeecCCh
Q 035550 1295 SLTSLWIFNFP----NLERLSSSIVDLQNLTELKLHNCPKLKYFPEKG--LPSSLLQLQIVGCP 1352 (1385)
Q Consensus 1295 ~L~~L~l~~~~----~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~sL~~L~i~~c~ 1352 (1385)
.++.+++.++. .+..+|..+..+++|++|++++| +++.+|... -.++|++|++++||
T Consensus 250 ~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 250 LIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 56666666652 23357888999999999999997 699998753 35899999999886
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=3e-17 Score=197.59 Aligned_cols=228 Identities=16% Similarity=0.098 Sum_probs=156.7
Q ss_pred cccccEEEeccCCCCCcCcccccCCCCccEEEeccCCCccccc--CccCccccceEEeecCCCCCCCCcccccCCCCCcc
Q 035550 971 SCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFP--EVALPSKLKKVKIRECDALKSLPEAWRCDTNSSLE 1048 (1385)
Q Consensus 971 ~~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 1048 (1385)
+++|++|+|++|......+..+..+++|++|+|++|. +..++ .+..+++|++|++++|. +..+|... ...+++|+
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~ 150 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNW-LTVIPSGA-FEYLSKLR 150 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSBCCTTT-SSSCTTCC
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCc-CCccChhh-hcccCCCC
Confidence 3688899999888777677788889999999999884 44444 36678889999998887 55555432 13466888
Q ss_pred eEEeecCCCCcccc-ccCCCCCcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchh
Q 035550 1049 ILNIEDCHSLTYIA-AVQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPAT 1127 (1385)
Q Consensus 1049 ~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~ 1127 (1385)
+|++++|......+ .+..+++|+.|++++|..++.++..
T Consensus 151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~---------------------------------------- 190 (452)
T 3zyi_A 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG---------------------------------------- 190 (452)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT----------------------------------------
T ss_pred EEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh----------------------------------------
Confidence 88888876433222 2344566777777766655554321
Q ss_pred hhccccCCCCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCC
Q 035550 1128 LESLEVGNLPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLH 1207 (1385)
Q Consensus 1128 l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~ 1207 (1385)
.+..+ ++|++|++++|.+.+. | .+..+++|++|+|++|.+.+..|..+..+++|++|+|++|.+.+..|..|.
T Consensus 191 ----~~~~l-~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 263 (452)
T 3zyi_A 191 ----AFEGL-FNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD 263 (452)
T ss_dssp ----TTTTC-TTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred ----hccCC-CCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhc
Confidence 00111 4677777777765543 3 366777788888888876666667777777888888888877777677777
Q ss_pred CCCccceeeccccCCCCCCcccCCCCCCcceeEecCCcchh
Q 035550 1208 NLTSLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIW 1248 (1385)
Q Consensus 1208 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~ 1248 (1385)
++++|+.|+|++|.+....+..+..+++|+.|+|++|+...
T Consensus 264 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 264 GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp TCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 78888888888777666555566777788888888877543
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=1.2e-17 Score=189.93 Aligned_cols=225 Identities=17% Similarity=0.116 Sum_probs=125.2
Q ss_pred ccccEEEeccCCCCCcCcc-cccCCCCccEEEeccCCCcccc----cCccCccccceEEeecCCCCCCCCcccccCCCCC
Q 035550 972 CRLEYLRLSNCEGLVKLPQ-SSLSLSSLREIEIYKCSSLVSF----PEVALPSKLKKVKIRECDALKSLPEAWRCDTNSS 1046 (1385)
Q Consensus 972 ~~L~~L~Ls~~~~l~~l~~-~~~~l~~L~~L~L~~~~~l~~~----~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 1046 (1385)
++|++|++++|... .+|. .+..+++|++|++++|. +..+ +.+..+++|++|++++|. +..+|..+ ..+++
T Consensus 28 ~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~--~~l~~ 102 (306)
T 2z66_A 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNF--LGLEQ 102 (306)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEE--ETCTT
T ss_pred CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCc-cccChhhc--CCCCC
Confidence 57788888887754 4443 46778888888888874 3322 223446677777777776 44455443 23456
Q ss_pred cceEEeecCCCCccc--cccCCCCCcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCC
Q 035550 1047 LEILNIEDCHSLTYI--AAVQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNEL 1124 (1385)
Q Consensus 1047 L~~L~l~~~~~l~~~--~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~ 1124 (1385)
|++|++++|...... ..+..+++|+.|++++|.. ... .
T Consensus 103 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~---------------------------------------~ 142 (306)
T 2z66_A 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVA---------------------------------------F 142 (306)
T ss_dssp CCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC-EEC---------------------------------------S
T ss_pred CCEEECCCCcccccccchhhhhccCCCEEECCCCcC-Ccc---------------------------------------c
Confidence 666666665422211 1122333444444444321 000 0
Q ss_pred chhhhccccCCCCcccceeEEcccCcch-hhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCccccc
Q 035550 1125 PATLESLEVGNLPSSLKSLVVWSCSKLE-SIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALP 1203 (1385)
Q Consensus 1125 ~~~l~~l~~~~~~~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp 1203 (1385)
+..+. .+ ++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+
T Consensus 143 ~~~~~-----~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 216 (306)
T 2z66_A 143 NGIFN-----GL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216 (306)
T ss_dssp TTTTT-----TC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS
T ss_pred hhhcc-----cC-cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh
Confidence 00011 11 456666666665554 355556666666666666666554445556666666666666666555444
Q ss_pred ccCCCCCccceeeccccCCCCCCcccCCCC-CCcceeEecCCcch
Q 035550 1204 KGLHNLTSLQELTIGIGGALPSLEEEDGLP-TNLQSLNIWGNMEI 1247 (1385)
Q Consensus 1204 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~-~~L~~L~L~~n~~~ 1247 (1385)
..+..+++|+.|++++|.+.+..|..+..+ ++|++|++++|++.
T Consensus 217 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 456666666666666666666555555554 36666666666543
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=1.3e-16 Score=195.71 Aligned_cols=257 Identities=26% Similarity=0.331 Sum_probs=191.8
Q ss_pred CCccEEEeccCCCcccccCccCccccceEEeecCCCCCCCCcccccCCCCCcceEEeecCCCCccccccCCCCCcceEEe
Q 035550 996 SSLREIEIYKCSSLVSFPEVALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEILNIEDCHSLTYIAAVQLPPSLKQLEI 1075 (1385)
Q Consensus 996 ~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l 1075 (1385)
.+++.|++++| .++.+|... +++|+.|++++|. ++.+|. .+++|++|++++|. ++.++. .+++|+.|++
T Consensus 40 ~~l~~L~ls~n-~L~~lp~~l-~~~L~~L~L~~N~-l~~lp~-----~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGES-GLTTLPDCL-PAHITTLVIPDNN-LTSLPA-----LPPELRTLEVSGNQ-LTSLPV--LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSS-CCSCCCSCC-CTTCSEEEECSCC-CSCCCC-----CCTTCCEEEECSCC-CSCCCC--CCTTCCEEEE
T ss_pred CCCcEEEecCC-CcCccChhh-CCCCcEEEecCCC-CCCCCC-----cCCCCCEEEcCCCc-CCcCCC--CCCCCCEEEC
Confidence 35899999988 566777532 3789999999997 667775 34688888888887 333443 5567777777
Q ss_pred ccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchhhhccccCCCCcccceeEEcccCcchhhh
Q 035550 1076 YNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPATLESLEVGNLPSSLKSLVVWSCSKLESIA 1155 (1385)
Q Consensus 1076 ~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~~~~ 1155 (1385)
++|. ++.++ ..+++|+.|++++|.+.+ +|
T Consensus 109 s~N~-l~~l~-------------------------------------------------~~l~~L~~L~L~~N~l~~-lp 137 (622)
T 3g06_A 109 FSNP-LTHLP-------------------------------------------------ALPSGLCKLWIFGNQLTS-LP 137 (622)
T ss_dssp CSCC-CCCCC-------------------------------------------------CCCTTCCEEECCSSCCSC-CC
T ss_pred cCCc-CCCCC-------------------------------------------------CCCCCcCEEECCCCCCCc-CC
Confidence 7662 22221 123689999999987655 55
Q ss_pred hhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeeccccCCCCCCcccCCCCCC
Q 035550 1156 ERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIGGALPSLEEEDGLPTN 1235 (1385)
Q Consensus 1156 ~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~ 1235 (1385)
.. +++|++|+|++|. +..+|. .+.+|+.|++++|.+. .+| ..+++|+.|++++|.+.+ +|. .+++
T Consensus 138 ~~---l~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N~l~-~l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~ 202 (622)
T 3g06_A 138 VL---PPGLQELSVSDNQ-LASLPA---LPSELCKLWAYNNQLT-SLP---MLPSGLQELSVSDNQLAS-LPT---LPSE 202 (622)
T ss_dssp CC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC---CCTT
T ss_pred CC---CCCCCEEECcCCc-CCCcCC---ccCCCCEEECCCCCCC-CCc---ccCCCCcEEECCCCCCCC-CCC---ccch
Confidence 43 5899999999998 455664 3468999999999854 466 467999999999998654 553 4689
Q ss_pred cceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCCCCcccceeecccccccccccccCC
Q 035550 1236 LQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLPASLTSLWIFNFPNLERLSSSIV 1315 (1385)
Q Consensus 1236 L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 1315 (1385)
|+.|++++|.+... + ..+++|+.|++++|. +.+....+++|+.|++++| .++.+|.
T Consensus 203 L~~L~L~~N~l~~l-----~---~~~~~L~~L~Ls~N~------------L~~lp~~l~~L~~L~Ls~N-~L~~lp~--- 258 (622)
T 3g06_A 203 LYKLWAYNNRLTSL-----P---ALPSGLKELIVSGNR------------LTSLPVLPSELKELMVSGN-RLTSLPM--- 258 (622)
T ss_dssp CCEEECCSSCCSSC-----C---CCCTTCCEEECCSSC------------CSCCCCCCTTCCEEECCSS-CCSCCCC---
T ss_pred hhEEECcCCccccc-----C---CCCCCCCEEEccCCc------------cCcCCCCCCcCcEEECCCC-CCCcCCc---
Confidence 99999999984421 1 235889999999963 3333356789999999997 7889987
Q ss_pred CCCCCCeEeccCCCCCCCCCCC-CCCCccceeeecCChhh
Q 035550 1316 DLQNLTELKLHNCPKLKYFPEK-GLPSSLLQLQIVGCPLM 1354 (1385)
Q Consensus 1316 ~l~~L~~L~l~~c~~l~~l~~~-~~~~sL~~L~i~~c~~l 1354 (1385)
.+++|++|++++| +++.+|.. +-.++|+.|++++|+.-
T Consensus 259 ~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 259 LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCC
Confidence 6789999999997 68899863 33578999999999753
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=1.7e-17 Score=188.73 Aligned_cols=243 Identities=17% Similarity=0.171 Sum_probs=148.3
Q ss_pred ccEEEeccCCCCCcCcccccCCCCccEEEeccCCCcccccC--ccCccccceEEeecCCCCCCC---CcccccCCCCCcc
Q 035550 974 LEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VALPSKLKKVKIRECDALKSL---PEAWRCDTNSSLE 1048 (1385)
Q Consensus 974 L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~---~~~~~~~~~~~L~ 1048 (1385)
-+.++.+++. ++.+|..+ .++|++|++++| .++.+|. +..+++|++|++++|. +..+ +..+ ..+++|+
T Consensus 9 ~~~l~c~~~~-l~~ip~~~--~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~--~~~~~L~ 81 (306)
T 2z66_A 9 GTEIRCNSKG-LTSVPTGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSD--FGTTSLK 81 (306)
T ss_dssp TTEEECCSSC-CSSCCSCC--CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHH--HSCSCCC
T ss_pred CCEEEcCCCC-cccCCCCC--CCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCc-cCcccCccccc--ccccccC
Confidence 3456666654 45666544 368888888888 4556664 5667788888888876 3322 2222 2345677
Q ss_pred eEEeecCCCCccccccCCCCCcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchhh
Q 035550 1049 ILNIEDCHSLTYIAAVQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPATL 1128 (1385)
Q Consensus 1049 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l 1128 (1385)
+|++++|........+..+++|+.|+++++. ++.++. ...+
T Consensus 82 ~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~--------------------------------------~~~~ 122 (306)
T 2z66_A 82 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSE--------------------------------------FSVF 122 (306)
T ss_dssp EEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTT--------------------------------------TTTT
T ss_pred EEECCCCccccChhhcCCCCCCCEEECCCCc-cccccc--------------------------------------chhh
Confidence 7777776533322223334455555555441 111100 0001
Q ss_pred hccccCCCCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCcc-ccCCCCCCccCcceEEeccccCcccccccCC
Q 035550 1129 ESLEVGNLPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLV-SFPEGGLPCVKLRMLAITNCKRLEALPKGLH 1207 (1385)
Q Consensus 1129 ~~l~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~-~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~ 1207 (1385)
..+ ++|++|++++|.+.+..+..+.++++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+..|..+.
T Consensus 123 -----~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 196 (306)
T 2z66_A 123 -----LSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196 (306)
T ss_dssp -----TTC-TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred -----hhc-cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhc
Confidence 111 467777777777766667777777777777777777544 4666777777777777777776666666777
Q ss_pred CCCccceeeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCC-ccceEEeccc
Q 035550 1208 NLTSLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFS-SLRYLLISGC 1272 (1385)
Q Consensus 1208 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~-~L~~L~l~~~ 1272 (1385)
.+++|+.|++++|.+.+..+..+..+++|++|++++|++... .+..+..++ +|+.|++++|
T Consensus 197 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS----KKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC----SSSSCCCCCTTCCEEECTTC
T ss_pred CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc----CHHHHHhhhccCCEEEccCC
Confidence 777777777777776665555666677777777777764322 223455553 6777777775
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=5.3e-17 Score=194.68 Aligned_cols=229 Identities=15% Similarity=0.119 Sum_probs=161.9
Q ss_pred cccccEEEeccCCCCCcCcccccCCCCccEEEeccCCCccccc--CccCccccceEEeecCCCCCCCCcccccCCCCCcc
Q 035550 971 SCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFP--EVALPSKLKKVKIRECDALKSLPEAWRCDTNSSLE 1048 (1385)
Q Consensus 971 ~~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 1048 (1385)
+++++.|+|++|......+..+..+++|++|+|++|. +..++ .+..+++|++|++++|. ++.++... ...+++|+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~ 139 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNR-LTTIPNGA-FVYLSKLK 139 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSC-CSSCCTTT-SCSCSSCC
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCc-CCeeCHhH-hhccccCc
Confidence 3678888998888766666788888999999999884 45444 36667888888888886 55555431 14557888
Q ss_pred eEEeecCCCCcccc-ccCCCCCcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchh
Q 035550 1049 ILNIEDCHSLTYIA-AVQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPAT 1127 (1385)
Q Consensus 1049 ~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~ 1127 (1385)
+|++++|......+ .+..+++|+.|++++|..+..++..
T Consensus 140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~---------------------------------------- 179 (440)
T 3zyj_A 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG---------------------------------------- 179 (440)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT----------------------------------------
T ss_pred eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc----------------------------------------
Confidence 88888876433222 2344566777777666555544220
Q ss_pred hhccccCCCCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCC
Q 035550 1128 LESLEVGNLPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLH 1207 (1385)
Q Consensus 1128 l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~ 1207 (1385)
.+..+ ++|++|++++|.+. .+| .+..+++|++|+|++|.+.+..|..+..+++|++|+|++|.+.+..+..|.
T Consensus 180 ----~~~~l-~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 252 (440)
T 3zyj_A 180 ----AFEGL-SNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD 252 (440)
T ss_dssp ----TTTTC-SSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSST
T ss_pred ----hhhcc-cccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhc
Confidence 00111 46777777777654 334 367788888888888886666677788888888888888887777777888
Q ss_pred CCCccceeeccccCCCCCCcccCCCCCCcceeEecCCcchhh
Q 035550 1208 NLTSLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWK 1249 (1385)
Q Consensus 1208 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 1249 (1385)
++++|+.|+|++|.+....+..+..+++|+.|+|++|+....
T Consensus 253 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 253 NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred CCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 888888888888887766666677788888888888875543
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=6.6e-20 Score=222.61 Aligned_cols=164 Identities=17% Similarity=0.205 Sum_probs=84.4
Q ss_pred ccCCCccEEEEecccCccccccccchhhhccCccceEeecCCCCcccchhhhhhHHHHHhhhccccccEEEeccCCCCC-
Q 035550 908 QRIPKLEELEIKNIKNETHIWKSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLV- 986 (1385)
Q Consensus 908 ~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~l~- 986 (1385)
..+++|+.|.+.++.--..........+..+++|++|+++++. +...... .....+....++|++|++++|....
T Consensus 25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~---~l~~~l~~~~~~L~~L~L~~n~i~~~ 100 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVH---CVLQGLQTPSCKIQKLSLQNCCLTGA 100 (461)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHH---HHHHTTCSTTCCCCEEECTTSCCBGG
T ss_pred hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHH---HHHHHHhhCCCceeEEEccCCCCCHH
Confidence 3466777777776642111111223445666778888887753 3221111 1111111111268888888877552
Q ss_pred ---cCcccccCCCCccEEEeccCCCcccc-c----C--ccCccccceEEeecCCCCCCC----CcccccCCCCCcceEEe
Q 035550 987 ---KLPQSSLSLSSLREIEIYKCSSLVSF-P----E--VALPSKLKKVKIRECDALKSL----PEAWRCDTNSSLEILNI 1052 (1385)
Q Consensus 987 ---~l~~~~~~l~~L~~L~L~~~~~l~~~-~----~--~~~~~~L~~L~l~~~~~l~~~----~~~~~~~~~~~L~~L~l 1052 (1385)
.++..+..+++|++|++++|. ++.. + . ....++|++|++++|...... +..+ ..+++|++|++
T Consensus 101 ~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l--~~~~~L~~L~L 177 (461)
T 1z7x_W 101 GCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL--RAKPDFKELTV 177 (461)
T ss_dssp GHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH--HHCTTCCEEEC
T ss_pred HHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH--hhCCCCCEEEC
Confidence 356667777788888888775 3221 1 0 112346777777777632211 2211 12357777777
Q ss_pred ecCCCCcccc-cc-----CCCCCcceEEeccC
Q 035550 1053 EDCHSLTYIA-AV-----QLPPSLKQLEIYNC 1078 (1385)
Q Consensus 1053 ~~~~~l~~~~-~~-----~~~~~L~~L~l~~~ 1078 (1385)
++|....... .+ ...++|+.|++++|
T Consensus 178 ~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 209 (461)
T 1z7x_W 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESC 209 (461)
T ss_dssp CSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS
T ss_pred cCCCcchHHHHHHHHHHhcCCCCceEEEccCC
Confidence 7776221110 00 12346777777766
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=6.1e-19 Score=201.07 Aligned_cols=79 Identities=14% Similarity=0.179 Sum_probs=43.9
Q ss_pred cccEEEeccCCCCCcCcccccCCCCccEEEeccCCCccccc--CccCccccceEEeecCCCCCCCCcccccCCCCCcceE
Q 035550 973 RLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFP--EVALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEIL 1050 (1385)
Q Consensus 973 ~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 1050 (1385)
+++..+++++.....+...+..+++|++|++++|. ++.++ .+..+++|++|++++|.... ++. ...+++|++|
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~---~~~l~~L~~L 85 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYE-TLD---LESLSTLRTL 85 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTSCCEE-EEE---ETTCTTCCEE
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCCcCCc-chh---hhhcCCCCEE
Confidence 44555555554333333445566788888888884 44333 25566777777777776322 221 2344555666
Q ss_pred EeecCC
Q 035550 1051 NIEDCH 1056 (1385)
Q Consensus 1051 ~l~~~~ 1056 (1385)
++++|.
T Consensus 86 ~Ls~n~ 91 (317)
T 3o53_A 86 DLNNNY 91 (317)
T ss_dssp ECCSSE
T ss_pred ECcCCc
Confidence 655553
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=6.5e-18 Score=203.92 Aligned_cols=218 Identities=13% Similarity=0.073 Sum_probs=130.8
Q ss_pred ccccccEEEeccCCCCCcCcccccCCCCccEEEeccCCCcccccCccCccccceEEeecCCCCCCCCcccccCCCCCcce
Q 035550 970 LSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEI 1049 (1385)
Q Consensus 970 ~~~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 1049 (1385)
.+++|++|+|++|......|..+..+++|++|+|++|. +...+.+..+++|++|++++|. ++.+|.. ++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~~------~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELLVG------PSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSE-EEEEEEC------TTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCc-CCCCCCC------CCcCE
Confidence 34689999999998777777889999999999999995 4444447778888888888886 4444421 46777
Q ss_pred EEeecCCCCccccccCCCCCcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchhhh
Q 035550 1050 LNIEDCHSLTYIAAVQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPATLE 1129 (1385)
Q Consensus 1050 L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~ 1129 (1385)
|++++|......+ ..+++|+.|++++|. ++.++ +..+.
T Consensus 104 L~L~~N~l~~~~~--~~l~~L~~L~L~~N~-l~~~~---------------------------------------~~~~~ 141 (487)
T 3oja_A 104 LHAANNNISRVSC--SRGQGKKNIYLANNK-ITMLR---------------------------------------DLDEG 141 (487)
T ss_dssp EECCSSCCCCEEE--CCCSSCEEEECCSSC-CCSGG---------------------------------------GBCGG
T ss_pred EECcCCcCCCCCc--cccCCCCEEECCCCC-CCCCC---------------------------------------chhhc
Confidence 7777765333222 123445555554442 11110 00011
Q ss_pred ccccCCCCcccceeEEcccCcchhhhhhcC-CCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCC
Q 035550 1130 SLEVGNLPSSLKSLVVWSCSKLESIAERLD-NNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHN 1208 (1385)
Q Consensus 1130 ~l~~~~~~~~L~~L~L~~~~~~~~~~~~l~-~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~ 1208 (1385)
.+ ++|+.|++++|.+.+..|..+. .+++|++|+|++|.+.+. |. ...+++|++|+|++|.+.+ +|..+..
T Consensus 142 ~l------~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~ 212 (487)
T 3oja_A 142 CR------SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQS 212 (487)
T ss_dssp GG------SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGG
T ss_pred CC------CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcC
Confidence 11 4566666666666665555553 566666666666663333 22 2235666666666666443 3334666
Q ss_pred CCccceeeccccCCCCCCcccCCCCCCcceeEecCCcch
Q 035550 1209 LTSLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEI 1247 (1385)
Q Consensus 1209 l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~ 1247 (1385)
+++|+.|++++|.+.+ +|..++.+++|+.|++++|+..
T Consensus 213 l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 213 AAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp GTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred CCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 6666666666665443 4545555666666666666544
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=1.1e-19 Score=228.90 Aligned_cols=161 Identities=16% Similarity=0.219 Sum_probs=92.8
Q ss_pred cccCCCccEEEEecccCcccccccc-----------chhhhccCccceEeecCCCCcccchhhhhhHHHHHhhhcccccc
Q 035550 907 KQRIPKLEELEIKNIKNETHIWKSH-----------NELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLE 975 (1385)
Q Consensus 907 ~~~l~~L~~L~l~~~~~~~~i~~~~-----------~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~ 975 (1385)
...|++|++|.+.++.....+...+ ......+++|++|++++|. ++.... ..+...+++|+
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~-------~~l~~~~~~L~ 133 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCL-------ELIAKSFKNFK 133 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHH-------HHHHHHCTTCC
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHH-------HHHHHhCCCCc
Confidence 4567888888888876543322111 1234567788888888864 322111 11222246888
Q ss_pred EEEeccCCCCCc--CcccccCCCCccEEEeccCCCccc-----ccC-ccCccccceEEeecCCCCCCCCcc-c--ccCCC
Q 035550 976 YLRLSNCEGLVK--LPQSSLSLSSLREIEIYKCSSLVS-----FPE-VALPSKLKKVKIRECDALKSLPEA-W--RCDTN 1044 (1385)
Q Consensus 976 ~L~Ls~~~~l~~--l~~~~~~l~~L~~L~L~~~~~l~~-----~~~-~~~~~~L~~L~l~~~~~l~~~~~~-~--~~~~~ 1044 (1385)
+|+|++|..... ++..+..+++|++|++++|. ++. ++. ...+++|+.|++++|. ..++.. + ....+
T Consensus 134 ~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~ 210 (594)
T 2p1m_B 134 VLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRC 210 (594)
T ss_dssp EEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHC
T ss_pred EEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhC
Confidence 888888854433 44445577888888888885 322 222 2245688888888876 222211 0 01124
Q ss_pred CCcceEEeecCCCCccccc-cCCCCCcceEEeccC
Q 035550 1045 SSLEILNIEDCHSLTYIAA-VQLPPSLKQLEIYNC 1078 (1385)
Q Consensus 1045 ~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~ 1078 (1385)
++|++|++++|..+..++. ...+++|+.|++..|
T Consensus 211 ~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp TTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred CCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 6788888888855544332 234567888875544
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=5e-17 Score=182.46 Aligned_cols=130 Identities=13% Similarity=0.059 Sum_probs=62.2
Q ss_pred ccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeecc
Q 035550 1139 SLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIG 1218 (1385)
Q Consensus 1139 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~ 1218 (1385)
+|++|++++|.+.+..|..+.++++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECC
Confidence 44455555554444444445555555555555555333233334445555555555554333333345555555555555
Q ss_pred ccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEeccc
Q 035550 1219 IGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGC 1272 (1385)
Q Consensus 1219 ~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 1272 (1385)
+|.+.+..|..+..+++|++|++++|.+..... ..+..+++|+.|++++|
T Consensus 186 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT----EALAPLRALQYLRLNDN 235 (285)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH----HHHTTCTTCCEEECCSS
T ss_pred CCcccccCHhHccCcccccEeeCCCCcCCcCCH----HHcccCcccCEEeccCC
Confidence 555444444445555555555555554322111 22444555555555554
No 70
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.71 E-value=1.7e-16 Score=190.15 Aligned_cols=242 Identities=16% Similarity=0.179 Sum_probs=179.5
Q ss_pred cccEEEeccCCCCCcCcccccCCCCccEEEeccCCCccccc--CccCccccceEEeecCCCCCCCC-cccccCCCCCcce
Q 035550 973 RLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFP--EVALPSKLKKVKIRECDALKSLP-EAWRCDTNSSLEI 1049 (1385)
Q Consensus 973 ~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~L~~ 1049 (1385)
....++.++.. +..+|..+. ++++.|+|++|. +..++ .+..+++|++|++++|. +..++ ..+ ..+++|++
T Consensus 44 ~~~~v~c~~~~-l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~--~~l~~L~~ 116 (440)
T 3zyj_A 44 QFSKVICVRKN-LREVPDGIS--TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAF--NGLANLNT 116 (440)
T ss_dssp TSCEEECCSCC-CSSCCSCCC--TTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSSC-CCEECGGGG--TTCSSCCE
T ss_pred CCCEEEeCCCC-cCcCCCCCC--CCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCCc-CCccChhhc--cCCccCCE
Confidence 34566666544 567776554 688999999984 55544 36778889999999987 44444 333 45678888
Q ss_pred EEeecCCCCcccc-ccCCCCCcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchhh
Q 035550 1050 LNIEDCHSLTYIA-AVQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPATL 1128 (1385)
Q Consensus 1050 L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l 1128 (1385)
|++++|......+ .+..+++|+.|++++|. ++.++. .
T Consensus 117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~---------------------------------------~-- 154 (440)
T 3zyj_A 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPS---------------------------------------Y-- 154 (440)
T ss_dssp EECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECT---------------------------------------T--
T ss_pred EECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCH---------------------------------------H--
Confidence 8888886433322 24556677777777663 222211 0
Q ss_pred hccccCCCCcccceeEEcccCcchhhhh-hcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCC
Q 035550 1129 ESLEVGNLPSSLKSLVVWSCSKLESIAE-RLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLH 1207 (1385)
Q Consensus 1129 ~~l~~~~~~~~L~~L~L~~~~~~~~~~~-~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~ 1207 (1385)
.+..+ ++|++|++++|+.++.++. .|.++++|++|+|++|. +..+| .+..+++|++|+|++|.+.+..|..|.
T Consensus 155 ---~~~~l-~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 228 (440)
T 3zyj_A 155 ---AFNRI-PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQ 228 (440)
T ss_dssp ---TTTTC-TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCC-CCTTCSSCCEEECTTSCCCEECTTTTT
T ss_pred ---HhhhC-cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Ccccc-ccCCCcccCEEECCCCccCccChhhhc
Confidence 01111 5889999998877776654 68899999999999998 55666 478889999999999998888888999
Q ss_pred CCCccceeeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccC
Q 035550 1208 NLTSLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCD 1273 (1385)
Q Consensus 1208 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1273 (1385)
++++|+.|++++|.+....+..+..+++|++|+|++|++... .+..+..+++|+.|+|++|.
T Consensus 229 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL----PHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC----CTTTTSSCTTCCEEECCSSC
T ss_pred cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc----ChhHhccccCCCEEEcCCCC
Confidence 999999999999998888888889999999999999985532 23567889999999999974
No 71
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=2.1e-16 Score=190.25 Aligned_cols=243 Identities=18% Similarity=0.153 Sum_probs=179.8
Q ss_pred cccEEEeccCCCCCcCcccccCCCCccEEEeccCCCccccc--CccCccccceEEeecCCCCCCCCcccccCCCCCcceE
Q 035550 973 RLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFP--EVALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEIL 1050 (1385)
Q Consensus 973 ~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 1050 (1385)
....++.++.. +..+|..+. ++|++|+|++|. +..++ .+..+++|+.|++++|......+..+ ..+++|++|
T Consensus 55 ~~~~v~c~~~~-l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L 128 (452)
T 3zyi_A 55 QFSKVVCTRRG-LSEVPQGIP--SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF--NGLASLNTL 128 (452)
T ss_dssp SSCEEECCSSC-CSSCCSCCC--TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEE
T ss_pred CCcEEEECCCC-cCccCCCCC--CCccEEECcCCc-CceECHHHcCCCCCCCEEECCCCccCCcChhhc--cCcccCCEE
Confidence 34566665544 556776553 689999999984 44443 36778899999999987433333443 456788888
Q ss_pred EeecCCCCccccc-cCCCCCcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchhhh
Q 035550 1051 NIEDCHSLTYIAA-VQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPATLE 1129 (1385)
Q Consensus 1051 ~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~ 1129 (1385)
++++|......+. +..+++|+.|++++|. ++.++. .
T Consensus 129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~---------------------------------------~--- 165 (452)
T 3zyi_A 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPS---------------------------------------Y--- 165 (452)
T ss_dssp ECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECT---------------------------------------T---
T ss_pred ECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCH---------------------------------------h---
Confidence 8888874433322 3456777777777763 222211 0
Q ss_pred ccccCCCCcccceeEEcccCcchhhhh-hcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCC
Q 035550 1130 SLEVGNLPSSLKSLVVWSCSKLESIAE-RLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHN 1208 (1385)
Q Consensus 1130 ~l~~~~~~~~L~~L~L~~~~~~~~~~~-~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~ 1208 (1385)
.+..+ ++|++|++++|+.++.++. .|.++++|++|+|++|.+ ..+| .+..+++|++|+|++|.+.+..|..|.+
T Consensus 166 --~~~~l-~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 240 (452)
T 3zyi_A 166 --AFNRV-PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI-KDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHG 240 (452)
T ss_dssp --TTTTC-TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC-SSCC-CCTTCTTCCEEECTTSCCSEECGGGGTT
T ss_pred --HHhcC-CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc-cccc-cccccccccEEECcCCcCcccCcccccC
Confidence 01111 5888999998877776654 688999999999999984 4555 4778899999999999988888999999
Q ss_pred CCccceeeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccC
Q 035550 1209 LTSLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCD 1273 (1385)
Q Consensus 1209 l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1273 (1385)
+++|+.|++++|.+....+..+..+++|++|+|++|++... .+..+..+++|+.|+|++|.
T Consensus 241 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL----PHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC----CTTSSTTCTTCCEEECCSSC
T ss_pred ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc----ChHHhccccCCCEEEccCCC
Confidence 99999999999998888888889999999999999985422 23567889999999999974
No 72
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.70 E-value=8e-17 Score=180.82 Aligned_cols=204 Identities=18% Similarity=0.137 Sum_probs=154.8
Q ss_pred CCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccc-cccCCCCCccce
Q 035550 1136 LPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEAL-PKGLHNLTSLQE 1214 (1385)
Q Consensus 1136 ~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~l-p~~l~~l~~L~~ 1214 (1385)
+|++|++|++++|.+.+..+..|..+++|++|+|++|.+.+..|..+..+++|++|++++|..++.+ |..+..+++|++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 4578889999888887777777888899999999988866666778888889999999998744444 677888899999
Q ss_pred eeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCCCCc
Q 035550 1215 LTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLPA 1294 (1385)
Q Consensus 1215 L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~ 1294 (1385)
|++++|.+....|..+..+++|++|++++|.+... .+..+..+++|++|++++|... .++ ...+..++
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~--~~~------~~~~~~l~ 177 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL----PDDTFRDLGNLTHLFLHGNRIS--SVP------ERAFRGLH 177 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCC--EEC------TTTTTTCT
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCccccc----CHhHhccCCCccEEECCCCccc--ccC------HHHhcCcc
Confidence 99998887777777788888999999998875422 2244778888999999886421 111 12355678
Q ss_pred ccceeecccccccccc-cccCCCCCCCCeEeccCCCCCCCCCCC--CCCCccceeeecCChh
Q 035550 1295 SLTSLWIFNFPNLERL-SSSIVDLQNLTELKLHNCPKLKYFPEK--GLPSSLLQLQIVGCPL 1353 (1385)
Q Consensus 1295 ~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~sL~~L~i~~c~~ 1353 (1385)
+|+.|+++++. ++.+ |..+..+++|++|++++| .++.++.. .-.++|+.|+++++|-
T Consensus 178 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 178 SLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred ccCEEECCCCc-ccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 89999998874 5544 678888899999999986 57777642 3347889999888764
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=1.1e-16 Score=174.16 Aligned_cols=202 Identities=15% Similarity=0.063 Sum_probs=161.2
Q ss_pred CCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCC-CCCCccCcceEEecc-ccCcccccccCCCCCccc
Q 035550 1136 LPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPE-GGLPCVKLRMLAITN-CKRLEALPKGLHNLTSLQ 1213 (1385)
Q Consensus 1136 ~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~-~~~~l~~L~~L~L~~-n~~~~~lp~~l~~l~~L~ 1213 (1385)
+|++|++|++++|.+.+..+..|.++++|++|++++|..++.++. .+..+++|++|++++ |.+.+..+..|.++++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 567999999999998887777899999999999999985555554 678899999999999 776555556789999999
Q ss_pred eeeccccCCCCCCcccCCCCCCcc---eeEecCC-cchhhhhhhcCccCCCCCccc-eEEecccCCccccchhhhhhccC
Q 035550 1214 ELTIGIGGALPSLEEEDGLPTNLQ---SLNIWGN-MEIWKSMIERGRGFHRFSSLR-YLLISGCDDDMVSFALEDKRLGT 1288 (1385)
Q Consensus 1214 ~L~L~~n~~~~~~~~~~~~~~~L~---~L~L~~n-~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~l~~ 1288 (1385)
+|++++|.+.+ +|. +..+++|+ +|++++| .+.. ..+..|.++++|+ .|++++|... .++. .
T Consensus 109 ~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~----i~~~~~~~l~~L~~~L~l~~n~l~--~i~~------~ 174 (239)
T 2xwt_C 109 FLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTS----IPVNAFQGLCNETLTLKLYNNGFT--SVQG------Y 174 (239)
T ss_dssp EEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCE----ECTTTTTTTBSSEEEEECCSCCCC--EECT------T
T ss_pred EEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhh----cCcccccchhcceeEEEcCCCCCc--ccCH------h
Confidence 99999998655 675 88888888 9999999 5332 2234588999999 9999997522 2221 2
Q ss_pred cCCCCcccceeecccccccccccc-cCCCC-CCCCeEeccCCCCCCCCCCCCCCCccceeeecCChhh
Q 035550 1289 ALPLPASLTSLWIFNFPNLERLSS-SIVDL-QNLTELKLHNCPKLKYFPEKGLPSSLLQLQIVGCPLM 1354 (1385)
Q Consensus 1289 ~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l-~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~~l 1354 (1385)
.+.. ++|+.|++++|+.++.+|. .+..+ ++|+.|+++++ +++.+|.. ..++|+.|++.+|+.|
T Consensus 175 ~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 175 AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT-TCTTCSEEECTTC---
T ss_pred hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh-HhccCceeeccCccCC
Confidence 2333 7899999999877888865 67888 99999999996 69999875 5678999999999764
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.69 E-value=6e-18 Score=192.32 Aligned_cols=203 Identities=16% Similarity=0.077 Sum_probs=142.9
Q ss_pred cccceeEEcccCcchhhhhhc--CCCCCCcEEeecCCCCccccCCCCCCc-----cCcceEEeccccCcccccccCCCCC
Q 035550 1138 SSLKSLVVWSCSKLESIAERL--DNNTSLETISIDSCGNLVSFPEGGLPC-----VKLRMLAITNCKRLEALPKGLHNLT 1210 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~~~l--~~l~~L~~L~L~~n~~l~~~~~~~~~l-----~~L~~L~L~~n~~~~~lp~~l~~l~ 1210 (1385)
++|++|++++|.+.+.+|..+ ..+++|++|+|++|.+.+. |..+..+ ++|++|+|++|.+.+..|..+..++
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 477888888888777777765 7788888888888885544 6555555 7888888888887776667888888
Q ss_pred ccceeeccccCCCCC--CcccC--CCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhc
Q 035550 1211 SLQELTIGIGGALPS--LEEED--GLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRL 1286 (1385)
Q Consensus 1211 ~L~~L~L~~n~~~~~--~~~~~--~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l 1286 (1385)
+|++|++++|.+.+. ++..+ +.+++|++|++++|.+..... .....+.++++|++|++++|...-.. -
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~ 245 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG-VCSALAAARVQLQGLDLSHNSLRDAA-------G 245 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH-HHHHHHHTTCCCSEEECTTSCCCSSC-------C
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH-HHHHHHhcCCCCCEEECCCCcCCccc-------c
Confidence 888888888876654 23233 678888888888887542111 11123456788888888886421100 0
Q ss_pred cCcCCCCcccceeecccccccccccccCCCCCCCCeEeccCCCCCCCCCCCCCCCccceeeecCChh
Q 035550 1287 GTALPLPASLTSLWIFNFPNLERLSSSIVDLQNLTELKLHNCPKLKYFPEKGLPSSLLQLQIVGCPL 1353 (1385)
Q Consensus 1287 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~~ 1353 (1385)
...+..+++|+.|++++| .++.+|..+. ++|++|++++| +++.+|...-.++|+.|++++++.
T Consensus 246 ~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 246 APSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CSCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCTT
T ss_pred hhhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCChhHhhCCCCCEEeccCCCC
Confidence 012334678888888886 6778887776 88999999986 588887755567889999988863
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=2e-18 Score=217.13 Aligned_cols=376 Identities=17% Similarity=0.130 Sum_probs=198.7
Q ss_pred ccCCCccEEEEecccCccccccccchhhhccCccceEeecCCCCcccchhhhhhHHHHHhhhccccccEEEeccCCCCCc
Q 035550 908 QRIPKLEELEIKNIKNETHIWKSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVK 987 (1385)
Q Consensus 908 ~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~l~~ 987 (1385)
..+++|++|.+.++. +.. .....+...+++|++|++++|..+.... ...+...+++|++|+|++|.....
T Consensus 102 ~~~~~L~~L~L~~~~-~~~--~~~~~l~~~~~~L~~L~L~~~~~~~~~~-------l~~~~~~~~~L~~L~L~~~~i~~~ 171 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMV-VTD--DCLELIAKSFKNFKVLVLSSCEGFSTDG-------LAAIAATCRNLKELDLRESDVDDV 171 (594)
T ss_dssp HHCTTCCEEEEESCB-CCH--HHHHHHHHHCTTCCEEEEESCEEEEHHH-------HHHHHHHCTTCCEEECTTCEEECC
T ss_pred HhCCCCCeEEeeCcE-EcH--HHHHHHHHhCCCCcEEeCCCcCCCCHHH-------HHHHHHhCCCCCEEeCcCCccCCc
Confidence 457788888887764 111 1112223367888888888886554321 111222347888888888874332
Q ss_pred ----CcccccCCCCccEEEeccCC-Ccc--cccC-ccCccccceEEeecCCCCCCCCcccccCCCCCcceEEeecCCCC-
Q 035550 988 ----LPQSSLSLSSLREIEIYKCS-SLV--SFPE-VALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEILNIEDCHSL- 1058 (1385)
Q Consensus 988 ----l~~~~~~l~~L~~L~L~~~~-~l~--~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l- 1058 (1385)
++.....+++|++|++++|. .+. .++. ...+++|+.|++++|..++.++..+ ..+++|+.|++++|..-
T Consensus 172 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~~~ 249 (594)
T 2p1m_B 172 SGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL--QRAPQLEELGTGGYTAEV 249 (594)
T ss_dssp CGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHH--HHCTTCSEEECSBCCCCC
T ss_pred chHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHH--hcCCcceEcccccccCcc
Confidence 22233466788888888885 111 1111 1235788888888886555555443 23467888887766421
Q ss_pred c------cccccCCCCCcceE-EeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchhhhcc
Q 035550 1059 T------YIAAVQLPPSLKQL-EIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPATLESL 1131 (1385)
Q Consensus 1059 ~------~~~~~~~~~~L~~L-~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~l 1131 (1385)
. ....+..+++|+.| .+.+... ..+ ......+++|+.|++++|. +... .+...+
T Consensus 250 ~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l----------~~~~~~~~~L~~L~L~~~~-l~~~----~l~~~~--- 310 (594)
T 2p1m_B 250 RPDVYSGLSVALSGCKELRCLSGFWDAVP-AYL----------PAVYSVCSRLTTLNLSYAT-VQSY----DLVKLL--- 310 (594)
T ss_dssp CHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGG----------GGGHHHHTTCCEEECTTCC-CCHH----HHHHHH---
T ss_pred chhhHHHHHHHHhcCCCcccccCCcccch-hhH----------HHHHHhhCCCCEEEccCCC-CCHH----HHHHHH---
Confidence 0 00111233444444 1111100 000 0001135678888887776 3311 001111
Q ss_pred ccCCCCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCC--------CCcccc-CCCC-CCccCcceEEeccccCccc
Q 035550 1132 EVGNLPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSC--------GNLVSF-PEGG-LPCVKLRMLAITNCKRLEA 1201 (1385)
Q Consensus 1132 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n--------~~l~~~-~~~~-~~l~~L~~L~L~~n~~~~~ 1201 (1385)
..+ ++|++|++++|.....++.....+++|++|+|++| ..++.. ...+ ..+++|++|.++.|.+.+.
T Consensus 311 --~~~-~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~ 387 (594)
T 2p1m_B 311 --CQC-PKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNA 387 (594)
T ss_dssp --TTC-TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHH
T ss_pred --hcC-CCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHH
Confidence 112 57888888877222234444455778888888443 222110 0011 1356788887766665544
Q ss_pred ccccCC-CCCccceeecc-----ccCCCCCCcc------cCCCCCCcceeEecCCcchhhhhhhcCccCC-CCCccceEE
Q 035550 1202 LPKGLH-NLTSLQELTIG-----IGGALPSLEE------EDGLPTNLQSLNIWGNMEIWKSMIERGRGFH-RFSSLRYLL 1268 (1385)
Q Consensus 1202 lp~~l~-~l~~L~~L~L~-----~n~~~~~~~~------~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~-~l~~L~~L~ 1268 (1385)
.+..+. .+++|+.|+++ +|..++..|. .+..+++|+.|+++++ ...... ..+. .+++|+.|+
T Consensus 388 ~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~-l~~~~~----~~l~~~~~~L~~L~ 462 (594)
T 2p1m_B 388 ALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVF----EYIGTYAKKMEMLS 462 (594)
T ss_dssp HHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSS-CCHHHH----HHHHHHCTTCCEEE
T ss_pred HHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCc-ccHHHH----HHHHHhchhccEee
Confidence 433333 57788888887 3444443321 1345677888888662 222111 1122 367788888
Q ss_pred ecccCCccccchhhhhhccCcCCCCcccceeeccccccccc--ccccCCCCCCCCeEeccCCCC
Q 035550 1269 ISGCDDDMVSFALEDKRLGTALPLPASLTSLWIFNFPNLER--LSSSIVDLQNLTELKLHNCPK 1330 (1385)
Q Consensus 1269 l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~l~~L~~L~l~~c~~ 1330 (1385)
|++|.. .+..+......+++|+.|++++|+. +. +...+..+++|++|++++|+.
T Consensus 463 L~~~~i-------~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 463 VAFAGD-------SDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp EESCCS-------SHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred ccCCCC-------cHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 887642 1111111112366788888887754 32 222445577888888888753
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.69 E-value=5.4e-18 Score=192.71 Aligned_cols=107 Identities=20% Similarity=0.142 Sum_probs=48.2
Q ss_pred ccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccc--cCCCC--CCccCcceEEeccccCcc--ccc-ccCCCCCc
Q 035550 1139 SLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVS--FPEGG--LPCVKLRMLAITNCKRLE--ALP-KGLHNLTS 1211 (1385)
Q Consensus 1139 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~--~~~~~--~~l~~L~~L~L~~n~~~~--~lp-~~l~~l~~ 1211 (1385)
+|++|++++|.+.+..|..+.++++|++|++++|.+.+. ++..+ ..+++|++|++++|.+.+ .++ ..+..+++
T Consensus 150 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~ 229 (312)
T 1wwl_A 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQ 229 (312)
T ss_dssp TCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCC
T ss_pred CCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCC
Confidence 455555555554444444555555555555555554332 11111 444555555555554331 111 12234455
Q ss_pred cceeeccccCCCCCCc-ccCCCCCCcceeEecCCc
Q 035550 1212 LQELTIGIGGALPSLE-EEDGLPTNLQSLNIWGNM 1245 (1385)
Q Consensus 1212 L~~L~L~~n~~~~~~~-~~~~~~~~L~~L~L~~n~ 1245 (1385)
|+.|++++|.+.+..| ..+..+++|++|++++|.
T Consensus 230 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp CSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred CCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 5555555555444332 122334444455544444
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=3.3e-16 Score=174.90 Aligned_cols=207 Identities=19% Similarity=0.111 Sum_probs=158.3
Q ss_pred CCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCcccee
Q 035550 1136 LPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQEL 1215 (1385)
Q Consensus 1136 ~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L 1215 (1385)
+|++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 45789999999998887777788899999999999998665555678889999999999998777777888999999999
Q ss_pred eccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCCCCcc
Q 035550 1216 TIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLPAS 1295 (1385)
Q Consensus 1216 ~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 1295 (1385)
++++|.+....+..++.+++|++|++++|.+... ..+..+.++++|++|++++|.... +.. ..+..+.+
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~l~~~~~~l~~L~~L~Ls~N~l~~--~~~------~~~~~l~~ 174 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLEHLDLSSNKIQS--IYC------TDLRVLHQ 174 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC---CCCGGGGGCTTCCEEECCSSCCCE--ECG------GGGHHHHT
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCcccee---cCchhhccCCCCCEEECCCCCCCc--CCH------HHhhhhhh
Confidence 9999987777666788899999999999974421 124567888999999999975221 110 11222334
Q ss_pred cc----eeecccccccccccccCCCCCCCCeEeccCCCCCCCCCCCCC--CCccceeeec------CChhhH
Q 035550 1296 LT----SLWIFNFPNLERLSSSIVDLQNLTELKLHNCPKLKYFPEKGL--PSSLLQLQIV------GCPLMK 1355 (1385)
Q Consensus 1296 L~----~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~sL~~L~i~------~c~~l~ 1355 (1385)
|+ +|+++++ .++.++.......+|+.|++++| .++.+|...+ .++|+.|+++ +|+.+.
T Consensus 175 L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~ 244 (276)
T 2z62_A 175 MPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 244 (276)
T ss_dssp CTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred ccccceeeecCCC-cccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCcccccCCchH
Confidence 44 7888885 67788777777778999999987 4888887433 5789999988 566554
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=2.2e-16 Score=190.62 Aligned_cols=149 Identities=10% Similarity=0.023 Sum_probs=68.7
Q ss_pred CCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCC-CCCccceeeccccCCCCCCcccCCCCCCcceeE
Q 035550 1162 TSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLH-NLTSLQELTIGIGGALPSLEEEDGLPTNLQSLN 1240 (1385)
Q Consensus 1162 ~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~-~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ 1240 (1385)
++|+.|+|++|.+.+..|..+..+++|++|+|++|.+.+..|..+. .+++|+.|+|++|.+.+. | ....+++|++|+
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~ 197 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLD 197 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEE
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEE
Confidence 4444444444443333333444444444444444444444443332 344444444444443322 1 122344444555
Q ss_pred ecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCCCCcccceeeccccccc-ccccccCCCCCC
Q 035550 1241 IWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLPASLTSLWIFNFPNL-ERLSSSIVDLQN 1319 (1385)
Q Consensus 1241 L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l-~~l~~~~~~l~~ 1319 (1385)
|++|.+.. .+..+..+++|+.|++++|... .++..+..+++|+.|++++|+.. ..+|..+..++.
T Consensus 198 Ls~N~l~~-----~~~~~~~l~~L~~L~Ls~N~l~---------~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~ 263 (487)
T 3oja_A 198 LSSNKLAF-----MGPEFQSAAGVTWISLRNNKLV---------LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (487)
T ss_dssp CCSSCCCE-----ECGGGGGGTTCSEEECTTSCCC---------EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHH
T ss_pred CCCCCCCC-----CCHhHcCCCCccEEEecCCcCc---------ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCC
Confidence 54444221 1122444455555555554210 11222334445555555554333 356667788888
Q ss_pred CCeEecc
Q 035550 1320 LTELKLH 1326 (1385)
Q Consensus 1320 L~~L~l~ 1326 (1385)
|+.|+++
T Consensus 264 L~~l~~~ 270 (487)
T 3oja_A 264 VQTVAKQ 270 (487)
T ss_dssp HHHHHHH
T ss_pred CcEEecc
Confidence 8888886
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.64 E-value=2.7e-15 Score=167.72 Aligned_cols=177 Identities=16% Similarity=0.065 Sum_probs=120.4
Q ss_pred CcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceee
Q 035550 1137 PSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELT 1216 (1385)
Q Consensus 1137 ~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~ 1216 (1385)
|+.++.|++++|.+.+..+..|.++++|++|+|++|.+ +.++.. ..+++|++|++++|. +..+|..+..+++|+.|+
T Consensus 30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLD 106 (290)
T ss_dssp CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEE
T ss_pred CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-CcccCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEE
Confidence 35677777777777766677777778888888887774 334433 566778888888776 446677777777888888
Q ss_pred ccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCCCCccc
Q 035550 1217 IGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLPASL 1296 (1385)
Q Consensus 1217 L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~L 1296 (1385)
+++|.+....+..+..+++|++|++++|++... .+..+..+++|+.|++++|... .++ .+.+..+++|
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~--~l~------~~~~~~l~~L 174 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTL----PPGLLTPTPKLEKLSLANNNLT--ELP------AGLLNGLENL 174 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECTTSCCS--CCC------TTTTTTCTTC
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc----ChhhcccccCCCEEECCCCcCC--ccC------HHHhcCcCCC
Confidence 887776666666677777888888877764322 2244667777777777775321 111 1233456677
Q ss_pred ceeecccccccccccccCCCCCCCCeEeccCCC
Q 035550 1297 TSLWIFNFPNLERLSSSIVDLQNLTELKLHNCP 1329 (1385)
Q Consensus 1297 ~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 1329 (1385)
+.|+++++ .++.+|..+..+++|+.|+++++|
T Consensus 175 ~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 175 DTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CEEECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence 77777774 677777777777778888887766
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.64 E-value=2.5e-15 Score=167.95 Aligned_cols=110 Identities=17% Similarity=0.021 Sum_probs=81.2
Q ss_pred cccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeec
Q 035550 1138 SSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTI 1217 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L 1217 (1385)
++|++|++++|.+.+..+..|.++++|++|+|++|.+.+..+..+..+++|+.|+|++|.+....+..+..+++|+.|++
T Consensus 100 ~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179 (290)
T ss_dssp TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEEC
Confidence 46667777777666666667788888888888888855544455667888888888888865444445678888888888
Q ss_pred cccCCCCCCcccCCCCCCcceeEecCCcchh
Q 035550 1218 GIGGALPSLEEEDGLPTNLQSLNIWGNMEIW 1248 (1385)
Q Consensus 1218 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~ 1248 (1385)
++|.+. .+|..+...++|+.|+|++|+..+
T Consensus 180 ~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 888754 666677777788888888887543
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.64 E-value=2.4e-15 Score=166.97 Aligned_cols=181 Identities=18% Similarity=0.080 Sum_probs=134.9
Q ss_pred CCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCcccee
Q 035550 1136 LPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQEL 1215 (1385)
Q Consensus 1136 ~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L 1215 (1385)
+|+++++|++++|.+.+..+..|.++++|++|+|++|.+....+..+..+++|++|+|++|.+.+..+..+..+++|++|
T Consensus 35 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEE
T ss_pred CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEE
Confidence 45689999999998877777788899999999999998554333445778999999999998766666677889999999
Q ss_pred eccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCCCCcc
Q 035550 1216 TIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLPAS 1295 (1385)
Q Consensus 1216 ~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 1295 (1385)
++++|.+....+..+..+++|++|++++|.+... .+..+..+++|+.|++++|... .++ ...+..+++
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~--~~~------~~~~~~l~~ 182 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL----PKGVFDKLTSLKELRLYNNQLK--RVP------EGAFDKLTE 182 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCS--CCC------TTTTTTCTT
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc----CHhHccCCcccceeEecCCcCc--EeC------hhHhccCCC
Confidence 9999988777777788899999999999974422 2244778888999999886421 111 123445677
Q ss_pred cceeecccccccccccc-cCCCCCCCCeEeccCCC
Q 035550 1296 LTSLWIFNFPNLERLSS-SIVDLQNLTELKLHNCP 1329 (1385)
Q Consensus 1296 L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~ 1329 (1385)
|+.|++++| .++.+|. .+..+++|+.|++++||
T Consensus 183 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 183 LKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 777777775 5666665 36667777777777765
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=2.3e-15 Score=167.20 Aligned_cols=163 Identities=15% Similarity=0.032 Sum_probs=103.3
Q ss_pred cccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeec
Q 035550 1138 SSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTI 1217 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L 1217 (1385)
++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 85 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence 46666666666666555556667777777777777755444444666777777777777655555555667777777777
Q ss_pred cccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCCCCcccc
Q 035550 1218 GIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLPASLT 1297 (1385)
Q Consensus 1218 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~ 1297 (1385)
++|.+.+..+..++.+++|++|++++|.+... .+..+..+++|+.|++++|. + ...+++|+
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~------------~---~~~~~~l~ 225 (272)
T 3rfs_A 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV----PDGVFDRLTSLQYIWLHDNP------------W---DCTCPGIR 225 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSC------------B---CCCTTTTH
T ss_pred CCCCcCccCHHHhcCCccCCEEECCCCcCCcc----CHHHHhCCcCCCEEEccCCC------------c---cccCcHHH
Confidence 77776655555566677777777777764321 22345667777777777752 1 12345667
Q ss_pred eeecccccccccccccCCCCCC
Q 035550 1298 SLWIFNFPNLERLSSSIVDLQN 1319 (1385)
Q Consensus 1298 ~L~l~~~~~l~~l~~~~~~l~~ 1319 (1385)
.|+++.+..-+.+|.+++.++.
T Consensus 226 ~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 226 YLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp HHHHHHHHTGGGBBCTTSCBCG
T ss_pred HHHHHHHhCCCcccCcccccCC
Confidence 7777766555567766665544
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=1.2e-14 Score=161.26 Aligned_cols=108 Identities=16% Similarity=-0.008 Sum_probs=64.5
Q ss_pred cccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeec
Q 035550 1138 SSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTI 1217 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L 1217 (1385)
++|++|++++|.+.+..+..|..+++|++|+|++|.+.+..+..+..+++|++|+|++|.+.+..+..+..+++|+.|++
T Consensus 109 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 188 (270)
T 2o6q_A 109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL 188 (270)
T ss_dssp SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEEC
Confidence 35666666666665555555666666666666666643333333556666666666666655544445666666666666
Q ss_pred cccCCCCCCcccCCCCCCcceeEecCCc
Q 035550 1218 GIGGALPSLEEEDGLPTNLQSLNIWGNM 1245 (1385)
Q Consensus 1218 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 1245 (1385)
++|.+....+..+..+++|+.|++++|+
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 189 DNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 6666554444445556666666666665
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=1.8e-15 Score=171.88 Aligned_cols=203 Identities=15% Similarity=0.086 Sum_probs=145.2
Q ss_pred cccceeEEcccCcchhhhhhc--CCCCCCcEEeecCCCCccccC----CCCCCccCcceEEeccccCcccccccCCCCCc
Q 035550 1138 SSLKSLVVWSCSKLESIAERL--DNNTSLETISIDSCGNLVSFP----EGGLPCVKLRMLAITNCKRLEALPKGLHNLTS 1211 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~~~l--~~l~~L~~L~L~~n~~l~~~~----~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~ 1211 (1385)
++|++|++++|.+.+..|..+ ..+++|++|+|++|.+.+..+ ..+..+++|++|+|++|.+.+..|..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 468888888888888887777 788888899998888665443 22346788889999888877777778888888
Q ss_pred cceeeccccCCCCC--C--cccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhcc
Q 035550 1212 LQELTIGIGGALPS--L--EEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLG 1287 (1385)
Q Consensus 1212 L~~L~L~~n~~~~~--~--~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 1287 (1385)
|++|++++|++.+. + +..++.+++|++|++++|.+...... ....+..+++|++|++++|...-. .+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~~l~~L~~L~Ls~N~l~~~--------~p 241 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV-CAALAAAGVQPHSLDLSHNSLRAT--------VN 241 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH-HHHHHHHTCCCSSEECTTSCCCCC--------CC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH-HHHHHhcCCCCCEEECCCCCCCcc--------ch
Confidence 99999988886542 2 12235678888999988875322111 011246778899999988642110 01
Q ss_pred CcCC---CCcccceeecccccccccccccCCCCCCCCeEeccCCCCCCCCCCCCCCCccceeeecCChh
Q 035550 1288 TALP---LPASLTSLWIFNFPNLERLSSSIVDLQNLTELKLHNCPKLKYFPEKGLPSSLLQLQIVGCPL 1353 (1385)
Q Consensus 1288 ~~~~---~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~~ 1353 (1385)
..+. .+++|++|++++| .++.+|..+. ++|++|++++| +++.+|.....++|+.|++++++-
T Consensus 242 ~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 242 PSAPRCMWSSALNSLNLSFA-GLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp SCCSSCCCCTTCCCEECCSS-CCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTTT
T ss_pred hhHHhccCcCcCCEEECCCC-CCCchhhhhc--CCCCEEECCCC-cCCCCchhhhCCCccEEECcCCCC
Confidence 1122 2368999999886 6778887774 89999999986 588887655568899999988863
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.59 E-value=1.1e-14 Score=162.39 Aligned_cols=202 Identities=16% Similarity=0.053 Sum_probs=121.5
Q ss_pred ccccEEEeccCCCCCcCcccccCCCCccEEEeccCCCcccccC--ccCccccceEEeecCCCCCCCCcccccCCCCCcce
Q 035550 972 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEI 1049 (1385)
Q Consensus 972 ~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 1049 (1385)
++|++|++++|......+..+..+++|++|++++| .+..++. +..+++|++|++++|......+..+ ..+++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT--TTCTTCCE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhh--cCCccccE
Confidence 56888888888765555557778888888888888 4444443 5566777777777776322222222 23345555
Q ss_pred EEeecCCCCcccc-ccCCCCCcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchhh
Q 035550 1050 LNIEDCHSLTYIA-AVQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPATL 1128 (1385)
Q Consensus 1050 L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l 1128 (1385)
|++++|......+ .+..+
T Consensus 105 L~l~~n~l~~~~~~~~~~l------------------------------------------------------------- 123 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHL------------------------------------------------------------- 123 (276)
T ss_dssp EECTTSCCCCSTTCCCTTC-------------------------------------------------------------
T ss_pred EECCCCCccccCchhcccC-------------------------------------------------------------
Confidence 5555543211110 01111
Q ss_pred hccccCCCCcccceeEEcccCcchh-hhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcc----eEEeccccCccccc
Q 035550 1129 ESLEVGNLPSSLKSLVVWSCSKLES-IAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLR----MLAITNCKRLEALP 1203 (1385)
Q Consensus 1129 ~~l~~~~~~~~L~~L~L~~~~~~~~-~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~----~L~L~~n~~~~~lp 1203 (1385)
++|++|++++|.+.+. +|..+.++++|++|++++|.+.+..+..+..+.+|+ +|++++|.+.+..+
T Consensus 124 ---------~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~ 194 (276)
T 2z62_A 124 ---------KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194 (276)
T ss_dssp ---------TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT
T ss_pred ---------CCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCc
Confidence 4666666666665552 466677777777777777775544444555555555 67777777544433
Q ss_pred ccCCCCCccceeeccccCCCCCCcccCCCCCCcceeEecCCcch
Q 035550 1204 KGLHNLTSLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEI 1247 (1385)
Q Consensus 1204 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~ 1247 (1385)
..+ ...+|+.|++++|.+.+..+..+..+++|+.|++++|+..
T Consensus 195 ~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 195 GAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp TSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 333 3447777777777765555545567777777777777643
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.58 E-value=1.5e-14 Score=157.32 Aligned_cols=103 Identities=16% Similarity=0.090 Sum_probs=50.9
Q ss_pred ccceeEEcc-cCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcc---eEEeccc-cCcccccccCCCCCccc
Q 035550 1139 SLKSLVVWS-CSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLR---MLAITNC-KRLEALPKGLHNLTSLQ 1213 (1385)
Q Consensus 1139 ~L~~L~L~~-~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~---~L~L~~n-~~~~~lp~~l~~l~~L~ 1213 (1385)
+|++|++++ |.+.+..+..|.++++|++|++++|.+ ..+|. +..+++|+ +|++++| .+.+..+..|.++++|+
T Consensus 81 ~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~ 158 (239)
T 2xwt_C 81 KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET 158 (239)
T ss_dssp TCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSE
T ss_pred CCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCcccccchhcce
Confidence 455555555 333333334455556666666666553 23444 44555555 6666666 33333333455566666
Q ss_pred -eeeccccCCCCCCcccCCCCCCcceeEecCC
Q 035550 1214 -ELTIGIGGALPSLEEEDGLPTNLQSLNIWGN 1244 (1385)
Q Consensus 1214 -~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n 1244 (1385)
.|++++|.+. .+|......++|++|++++|
T Consensus 159 ~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 159 LTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp EEEECCSCCCC-EECTTTTTTCEEEEEECTTC
T ss_pred eEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCC
Confidence 6666655543 33322222245555555555
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=2.8e-14 Score=161.87 Aligned_cols=203 Identities=15% Similarity=0.122 Sum_probs=131.1
Q ss_pred ccccEEEeccCCCCCcCcccc--cCCCCccEEEeccCCCcccccC-----ccCccccceEEeecCCCCCCCCcccccCCC
Q 035550 972 CRLEYLRLSNCEGLVKLPQSS--LSLSSLREIEIYKCSSLVSFPE-----VALPSKLKKVKIRECDALKSLPEAWRCDTN 1044 (1385)
Q Consensus 972 ~~L~~L~Ls~~~~l~~l~~~~--~~l~~L~~L~L~~~~~l~~~~~-----~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 1044 (1385)
++|++|++++|......|..+ ..+++|++|++++|......+. +..+++|++|++++|......+..+ ..+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~--~~l 168 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV--RAF 168 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC--CCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh--ccC
Confidence 579999999998887888777 8889999999999865443331 2346677777777777433333332 233
Q ss_pred CCcceEEeecCCCCccccccCCCCCcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCC
Q 035550 1045 SSLEILNIEDCHSLTYIAAVQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNEL 1124 (1385)
Q Consensus 1045 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~ 1124 (1385)
++|++|++++|....... ++...
T Consensus 169 ~~L~~L~Ls~N~l~~~~~---------------------~~~~~------------------------------------ 191 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERG---------------------LMAAL------------------------------------ 191 (310)
T ss_dssp TTCCEEECCSCTTCHHHH---------------------HHTTS------------------------------------
T ss_pred CCCCEEECCCCCCccchh---------------------hhHHH------------------------------------
Confidence 455555555554221100 00000
Q ss_pred chhhhccccCCCCcccceeEEcccCcch--hhhh-hcCCCCCCcEEeecCCCCccccCCCCCCc---cCcceEEeccccC
Q 035550 1125 PATLESLEVGNLPSSLKSLVVWSCSKLE--SIAE-RLDNNTSLETISIDSCGNLVSFPEGGLPC---VKLRMLAITNCKR 1198 (1385)
Q Consensus 1125 ~~~l~~l~~~~~~~~L~~L~L~~~~~~~--~~~~-~l~~l~~L~~L~L~~n~~l~~~~~~~~~l---~~L~~L~L~~n~~ 1198 (1385)
....+ ++|++|++++|.+.. ..+. .+.++++|++|+|++|.+.+..|..+..+ ++|++|+|++|.+
T Consensus 192 -------~~~~l-~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l 263 (310)
T 4glp_A 192 -------CPHKF-PAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGL 263 (310)
T ss_dssp -------CTTSS-CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCC
T ss_pred -------hhhcC-CCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCC
Confidence 00111 477778888876642 1222 34678888999999888766667666665 5888888888875
Q ss_pred cccccccCCCCCccceeeccccCCCCCCcccCCCCCCcceeEecCCcc
Q 035550 1199 LEALPKGLHNLTSLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNME 1246 (1385)
Q Consensus 1199 ~~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~ 1246 (1385)
. .+|..+. ++|+.|++++|.+.+. | .+..+++|++|++++|++
T Consensus 264 ~-~lp~~~~--~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 264 E-QVPKGLP--AKLRVLDLSSNRLNRA-P-QPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp C-SCCSCCC--SCCSCEECCSCCCCSC-C-CTTSCCCCSCEECSSTTT
T ss_pred C-chhhhhc--CCCCEEECCCCcCCCC-c-hhhhCCCccEEECcCCCC
Confidence 5 6777663 7888888888876543 3 256678888888888863
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.57 E-value=1.3e-14 Score=161.08 Aligned_cols=124 Identities=16% Similarity=-0.009 Sum_probs=75.3
Q ss_pred cccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeec
Q 035550 1138 SSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTI 1217 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L 1217 (1385)
++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence 35555566665555555555666666777777766644333344556667777777777655555555666677777777
Q ss_pred cccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEeccc
Q 035550 1218 GIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGC 1272 (1385)
Q Consensus 1218 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 1272 (1385)
++|.+.+..+..+..+++|++|++++|+.. ..+++|+.|+++.|
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-----------~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 189 YQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-----------CTCPGIRYLSEWIN 232 (272)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBC-----------CCTTTTHHHHHHHH
T ss_pred CCCcCCccCHHHHhCCcCCCEEEccCCCcc-----------ccCcHHHHHHHHHH
Confidence 777666655555666677777777776522 33555666666653
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.57 E-value=3.9e-15 Score=168.34 Aligned_cols=191 Identities=20% Similarity=0.258 Sum_probs=129.3
Q ss_pred ccCCceeEEEEcCcccccccccccCCccccEEecccccccccchhhhccCCccEEecCCCcchhhhhhcccccCCCCeee
Q 035550 527 FKLQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLD 606 (1385)
Q Consensus 527 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 606 (1385)
..+++|++|++++|.++.+| .+..+.+|++|+|++|.++.+|. +..+++|++|++++| .+..+| .+..+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEE
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEE
Confidence 55677888888888887776 57778888888888888887776 788888888888886 455554 577888888888
Q ss_pred cCCCCCcccccCCCCcccccccccceEecCCCCcChhhhcccccccceeEEeccCCCCCcchhHHhhcCCCCCCceEEEE
Q 035550 607 NLDTGSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGIRELKLLTHLRGTLNISKLENVKDIGDAKEAQLDGKKNLKVLKFQ 686 (1385)
Q Consensus 607 l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 686 (1385)
+++| .+..+|. ++.+++|++|.... +.+.. .. .+..+++|+.|+++
T Consensus 114 l~~n-~l~~~~~-l~~l~~L~~L~l~~------------------------n~l~~---~~-----~l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 114 LTST-QITDVTP-LAGLSNLQVLYLDL------------------------NQITN---IS-----PLAGLTNLQYLSIG 159 (308)
T ss_dssp CTTS-CCCCCGG-GTTCTTCCEEECCS------------------------SCCCC---CG-----GGGGCTTCCEEECC
T ss_pred CCCC-CCCCchh-hcCCCCCCEEECCC------------------------CccCc---Cc-----cccCCCCccEEEcc
Confidence 8887 5666654 66666666662111 11100 00 14455677777777
Q ss_pred EccCCCCCCchhhhhHHhhcccCCCCCCccceEEeccCCCCCCcccCCCCcccccEEEeeCCCCCCCCCCCCCCCCCCeE
Q 035550 687 WTQSTNDLSSREAETEKDVLVMLKPHENLEQFCISGYEGKEFPTWLGDSSFSNLATLKFEDCGVCTTLPSVGQLPSLKHL 766 (1385)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L 766 (1385)
.|.+... ..+..+++|+.|++++|....+|. + ..+++|+.|++++|.+... +++..+++|+.|
T Consensus 160 ~n~l~~~-------------~~l~~l~~L~~L~l~~n~l~~~~~-l--~~l~~L~~L~L~~N~l~~~-~~l~~l~~L~~L 222 (308)
T 1h6u_A 160 NAQVSDL-------------TPLANLSKLTTLKADDNKISDISP-L--ASLPNLIEVHLKNNQISDV-SPLANTSNLFIV 222 (308)
T ss_dssp SSCCCCC-------------GGGTTCTTCCEEECCSSCCCCCGG-G--GGCTTCCEEECTTSCCCBC-GGGTTCTTCCEE
T ss_pred CCcCCCC-------------hhhcCCCCCCEEECCCCccCcChh-h--cCCCCCCEEEccCCccCcc-ccccCCCCCCEE
Confidence 6665421 114566778888888877777665 2 2477888888888877543 357788888888
Q ss_pred EEcCCc
Q 035550 767 EVRGMR 772 (1385)
Q Consensus 767 ~L~~~~ 772 (1385)
++++|.
T Consensus 223 ~l~~N~ 228 (308)
T 1h6u_A 223 TLTNQT 228 (308)
T ss_dssp EEEEEE
T ss_pred EccCCe
Confidence 888764
No 90
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.57 E-value=1.2e-14 Score=173.02 Aligned_cols=312 Identities=13% Similarity=0.034 Sum_probs=183.8
Q ss_pred CCeeeechhHHHHHHHHH-hcCCcCC-CCCcEEEEE--EcCCCChHHHHHHHHhcCcccc---ccCC-cEEEEEeCCCCC
Q 035550 116 EAKVYGRETEKKEIVELL-LRDDLRN-DGEFSVIPI--IGMGGLGKTTLAQLVYNDKQVQ---DHFD-LKAWTCVSDDFD 187 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L-~~~~~~~-~~~~~vv~i--~G~gGiGKTtLa~~v~~~~~~~---~~f~-~~~wv~~~~~~~ 187 (1385)
+..++||+++++++.+++ ..... + ....+.+.| +|++|+||||||+++++..... ..+. .++|+.+....+
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~-~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLS-GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHT-SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCChHHHHHHHHHHHhHHHhc-CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 367999999999999988 43211 0 012356666 9999999999999999742211 0122 367888777778
Q ss_pred HHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcC--CCeEEEEEecCCCCC------ccccccccCcccCC---C--CC
Q 035550 188 VIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLS--PKKFLLVLDDVWNEN------YNDWDRLRPPFEAG---A--PG 254 (1385)
Q Consensus 188 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~------~~~~~~l~~~l~~~---~--~g 254 (1385)
...++..++.+++........+...+...+.+.+. +++++||+||+|.-. .+.+..+...+... + ..
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 88999999998865433223345556666666664 789999999996521 12333333333211 2 34
Q ss_pred cEEEEEccchhHhhhh--------CC-CCcccCCCCChhhhHHHhhhhc---cCcCCCCCchhHHHHHHHHHHhcC----
Q 035550 255 SKIIVTARNQGVAAIM--------GT-APAYQLKKLSNDDCLSVFAQHS---LGTRDFSSNKSLEEIGKKIVIKCN---- 318 (1385)
Q Consensus 255 s~ilvTtR~~~v~~~~--------~~-~~~~~l~~L~~~~~~~lf~~~a---~~~~~~~~~~~~~~~~~~i~~~~~---- 318 (1385)
..||+||+...+...+ .. ...+++++++.++++++|...+ +... ... .+....|++.++
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~---~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--VWE---PRHLELISDVYGEDKG 254 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--SCC---HHHHHHHHHHHCGGGT
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CCC---hHHHHHHHHHHHHhcc
Confidence 4588888866543211 11 1238999999999999997653 2211 111 356677899999
Q ss_pred --CCchHHHHHhhhhc------CC--CCHHHHHHHHhhhhhhhccccccchHHHHHhhhcCChhhhhhhhhhcccC--CC
Q 035550 319 --GLPLAAKTLGGLLR------GK--DDRREWEDVLSSKIWELQEERCDIIPALRVSYYYLSAPLKQCFAYCSLFP--KD 386 (1385)
Q Consensus 319 --g~PLai~~~~~~l~------~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp--~~ 386 (1385)
|.|..+..+..... .. -+.+.+..++..... ...+.-++..||++.+.++..+|.+. .+
T Consensus 255 ~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~ 325 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGGM 325 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTC
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCC
Confidence 99976555443211 11 123333333322100 12234456789999999999888654 23
Q ss_pred cccChHHHHHHHH--H-cCCCccCCCCCcHHHHHHHHHHHHHHcCCccccCC---CCCeEEEchhH
Q 035550 387 YEFEEEEIILLWC--A-SGFLGHKESGNPIEDLGRKFFQELRSRSFFQQSSN---NESRFVMHDLV 446 (1385)
Q Consensus 387 ~~~~~~~li~~w~--a-~g~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~---~~~~~~mhdlv 446 (1385)
..+...++...|. + . .... ..........++++|++.+++..... ...+|++|++.
T Consensus 326 ~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 326 EWINAGLLRQRYEDASLT-MYNV---KPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp SSBCHHHHHHHHHHHHHH-HSCC---CCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred CCccHHHHHHHHHHHHHh-hcCC---CCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 3455555554442 2 1 1110 11113446688999999999976432 23345555554
No 91
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.56 E-value=2.1e-14 Score=166.97 Aligned_cols=294 Identities=15% Similarity=0.141 Sum_probs=177.5
Q ss_pred cCCeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCC------CH
Q 035550 115 NEAKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF------DV 188 (1385)
Q Consensus 115 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~------~~ 188 (1385)
.+..|+||+++++++.+++... +++.|+|++|+|||||++++++. . . .+|+.+.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCH
Confidence 3567999999999999998531 58999999999999999999873 2 1 6777765432 55
Q ss_pred HHHHHHHHHHhcC-----------------CCCCCccCHHHHHHHHHhHcCC-CeEEEEEecCCCCCc-------ccccc
Q 035550 189 IRLTKSILLSIAS-----------------DQIVDNHDLNKLQEELKKKLSP-KKFLLVLDDVWNENY-------NDWDR 243 (1385)
Q Consensus 189 ~~~~~~i~~~~~~-----------------~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~~~-------~~~~~ 243 (1385)
..+.+.+...+.. .......+.+++.+.+.+..+. ++++||+||++.-+. ..+..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 5666666655432 0000123456666666665542 389999999955321 11222
Q ss_pred ccCcccCCCCCcEEEEEccchhHhhhh-----------CC-CCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHH
Q 035550 244 LRPPFEAGAPGSKIIVTARNQGVAAIM-----------GT-APAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGK 311 (1385)
Q Consensus 244 l~~~l~~~~~gs~ilvTtR~~~v~~~~-----------~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~ 311 (1385)
+...... ..+.++|+|++...+...+ +. ...+++.+|+.+|+.+++......... ... .+.+.
T Consensus 155 L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~~~---~~~~~ 229 (350)
T 2qen_A 155 FAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL-DVP---ENEIE 229 (350)
T ss_dssp HHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-CCC---HHHHH
T ss_pred HHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHH
Confidence 2222221 2467899998876432211 11 236899999999999999765321111 111 24667
Q ss_pred HHHHhcCCCchHHHHHhhhhcCCCCHHHHHH-HHhhhhhhhccccccchHHH-HHhhhcCChhhhhhhhhhcccCCCccc
Q 035550 312 KIVIKCNGLPLAAKTLGGLLRGKDDRREWED-VLSSKIWELQEERCDIIPAL-RVSYYYLSAPLKQCFAYCSLFPKDYEF 389 (1385)
Q Consensus 312 ~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~-~l~~~~~~~~~~~~~i~~~l-~~sy~~L~~~~k~cf~~~~~fp~~~~~ 389 (1385)
+|++.++|+|+++..++..+....+...+.. ..+.... .+...+ .+.+ . ++..+..+..+|. + ..
T Consensus 230 ~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~l~~-~-~~~~~~~l~~la~---g-~~ 296 (350)
T 2qen_A 230 EAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKG-------LIMGELEELRR-R-SPRYVDILRAIAL---G-YN 296 (350)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-------HHHHHHHHHHH-H-CHHHHHHHHHHHT---T-CC
T ss_pred HHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHH-------HHHHHHHHHHh-C-ChhHHHHHHHHHh---C-CC
Confidence 8999999999999998876532212222211 1111000 011111 1122 2 7889999999987 2 23
Q ss_pred ChHHHHHHHHHcCCCccCCCCCcHHHHHHHHHHHHHHcCCccccCCCCCeEEE-chhHHHHHH
Q 035550 390 EEEEIILLWCASGFLGHKESGNPIEDLGRKFFQELRSRSFFQQSSNNESRFVM-HDLVNDLAQ 451 (1385)
Q Consensus 390 ~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~m-hdlv~~~~~ 451 (1385)
....+.....+. .- +. .......+++.|++.+++.... ..|.+ |++++++.+
T Consensus 297 ~~~~l~~~~~~~-~~-----~~-~~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 297 RWSLIRDYLAVK-GT-----KI-PEPRLYALLENLKKMNWIVEED---NTYKIADPVVATVLR 349 (350)
T ss_dssp SHHHHHHHHHHT-TC-----CC-CHHHHHHHHHHHHHTTSEEEET---TEEEESSHHHHHHHT
T ss_pred CHHHHHHHHHHH-hC-----CC-CHHHHHHHHHHHHhCCCEEecC---CEEEEecHHHHHHHc
Confidence 445554433221 10 11 1244678999999999998652 35655 778887754
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.55 E-value=2.4e-14 Score=161.77 Aligned_cols=99 Identities=17% Similarity=0.070 Sum_probs=46.8
Q ss_pred ccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeecc
Q 035550 1139 SLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIG 1218 (1385)
Q Consensus 1139 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~ 1218 (1385)
+|++|++++|.+.+..+ +..+++|+.|++++|.+. .++. +..+++|++|++++|.+.+. +. +..+++|+.|+++
T Consensus 130 ~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~ 203 (308)
T 1h6u_A 130 NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLK 203 (308)
T ss_dssp TCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECT
T ss_pred CCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC-CChh-hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEcc
Confidence 44444554444433222 445555555555555422 2322 44455555555555553322 21 4455555555555
Q ss_pred ccCCCCCCcccCCCCCCcceeEecCCc
Q 035550 1219 IGGALPSLEEEDGLPTNLQSLNIWGNM 1245 (1385)
Q Consensus 1219 ~n~~~~~~~~~~~~~~~L~~L~L~~n~ 1245 (1385)
+|.+.+.. .+..+++|++|++++|+
T Consensus 204 ~N~l~~~~--~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 204 NNQISDVS--PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp TSCCCBCG--GGTTCTTCCEEEEEEEE
T ss_pred CCccCccc--cccCCCCCCEEEccCCe
Confidence 55543322 24445555555555554
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=5.3e-14 Score=154.09 Aligned_cols=133 Identities=17% Similarity=0.056 Sum_probs=95.9
Q ss_pred CCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCcccee
Q 035550 1136 LPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQEL 1215 (1385)
Q Consensus 1136 ~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L 1215 (1385)
+|+.++.|++++|.+.+..+..+.++++|++|+|++|.+.+..+..+..+++|++|+|++|.+.+..+..+..+++|++|
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEE
Confidence 44678888888888777777778888888888888887666556667778888888888887666666667788888888
Q ss_pred eccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEeccc
Q 035550 1216 TIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGC 1272 (1385)
Q Consensus 1216 ~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 1272 (1385)
++++|.+....+..+..+++|++|+|++|.+... .+..+..+++|++|+|++|
T Consensus 113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI----PAGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSS
T ss_pred EcCCCcCCCcChhHhccCCcccEEECcCCcCCcc----CHHHcCcCcCCCEEECCCC
Confidence 8888876655555567777888888887764321 1234666677777777765
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.52 E-value=1e-13 Score=151.72 Aligned_cols=176 Identities=17% Similarity=0.084 Sum_probs=132.8
Q ss_pred cccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeec
Q 035550 1138 SSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTI 1217 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L 1217 (1385)
...++++++++.+. .+|..+. ++|+.|+|++|.+.+..+..+..+++|++|+|++|.+.+..|..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 35677888877544 4555443 68999999999977777777889999999999999988877778899999999999
Q ss_pred cccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCCCCcccc
Q 035550 1218 GIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLPASLT 1297 (1385)
Q Consensus 1218 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~ 1297 (1385)
++|.+....+..+..+++|++|+|++|.+... .+..+..+++|++|++++|... .++ ...+..+++|+
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~--~~~------~~~~~~l~~L~ 158 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSL----PSGVFDRLTKLKELRLNTNQLQ--SIP------AGAFDKLTNLQ 158 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCC--CCC------TTTTTTCTTCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCc----ChhHhccCCcccEEECcCCcCC--ccC------HHHcCcCcCCC
Confidence 99998877777788899999999999975422 2244678899999999986421 111 12345567788
Q ss_pred eeecccccccccccc-cCCCCCCCCeEeccCCC
Q 035550 1298 SLWIFNFPNLERLSS-SIVDLQNLTELKLHNCP 1329 (1385)
Q Consensus 1298 ~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~ 1329 (1385)
+|+++++ .++.++. .+..+++|++|++++|+
T Consensus 159 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 159 TLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp EEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred EEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 8888775 5666554 56777788888887765
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.52 E-value=7.9e-14 Score=161.08 Aligned_cols=205 Identities=18% Similarity=0.091 Sum_probs=91.4
Q ss_pred CcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCC-CCCCccCcce-EEeccccCcccccccCCCCCccce
Q 035550 1137 PSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPE-GGLPCVKLRM-LAITNCKRLEALPKGLHNLTSLQE 1214 (1385)
Q Consensus 1137 ~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~-~~~~l~~L~~-L~L~~n~~~~~lp~~l~~l~~L~~ 1214 (1385)
|+++++|+|++|.+....+..|.++++|++|+|++|.+.+.+|. .|.+++++.+ +.+++|.+....|..|..+++|++
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 34555555555554433334455555555555555555444443 2344445443 333334433333445555555555
Q ss_pred eeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCC-CccceEEecccCCccccchhh-----------
Q 035550 1215 LTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRF-SSLRYLLISGCDDDMVSFALE----------- 1282 (1385)
Q Consensus 1215 L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~----------- 1282 (1385)
|++++|.+....+..+....++..|++.++..+.... +..+..+ ..++.|++++|... .++..
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~---~~~f~~~~~~l~~L~L~~N~i~--~i~~~~f~~~~L~~l~ 183 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE---RNSFVGLSFESVILWLNKNGIQ--EIHNSAFNGTQLDELN 183 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC---TTSSTTSBSSCEEEECCSSCCC--EECTTSSTTEEEEEEE
T ss_pred ccccccccccCCchhhcccchhhhhhhcccccccccc---ccchhhcchhhhhhcccccccc--CCChhhccccchhHHh
Confidence 5555555443333333334444455554432221111 1122222 23444555543211 00000
Q ss_pred ---hhhcc----CcCCCCcccceeecccccccccccccCCCCCCCCeEeccCCCCCCCCCCCCCCCccceeeec
Q 035550 1283 ---DKRLG----TALPLPASLTSLWIFNFPNLERLSSSIVDLQNLTELKLHNCPKLKYFPEKGLPSSLLQLQIV 1349 (1385)
Q Consensus 1283 ---~~~l~----~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~ 1349 (1385)
.+.+. ..+..+++|+.|+++++ .++.+|.. .+.+|+.|.+.+|++++.+|...-.++|+.+++.
T Consensus 184 l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 184 LSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp CTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred hccCCcccCCCHHHhccCcccchhhcCCC-CcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 01111 12334555566666554 45555542 2345555555555555555543334556665554
No 96
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.51 E-value=2.4e-13 Score=158.52 Aligned_cols=292 Identities=12% Similarity=0.099 Sum_probs=173.2
Q ss_pred cCCeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCC-----CCHH
Q 035550 115 NEAKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD-----FDVI 189 (1385)
Q Consensus 115 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~ 189 (1385)
.+..|+||++++++|.+ +. . +++.|+|++|+|||||++++++. ... ..+|+.+... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~------~---~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR------A---PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC------S---SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hc------C---CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHH
Confidence 35679999999999999 72 1 58999999999999999999873 221 2578887642 3444
Q ss_pred HHHHHHHHHhcC-------------C-------CCC--------CccCHHHHHHHHHhHcCCCeEEEEEecCCCCCc---
Q 035550 190 RLTKSILLSIAS-------------D-------QIV--------DNHDLNKLQEELKKKLSPKKFLLVLDDVWNENY--- 238 (1385)
Q Consensus 190 ~~~~~i~~~~~~-------------~-------~~~--------~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--- 238 (1385)
.....+...+.. . ... .......+.+.+.+.-+ ++++||+||++.-+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 455444443310 0 000 12345556666655433 499999999955221
Q ss_pred cccccccCcccCCCCCcEEEEEccchhHhhhh-----------CC-CCcccCCCCChhhhHHHhhhhccCcCCCCCchhH
Q 035550 239 NDWDRLRPPFEAGAPGSKIIVTARNQGVAAIM-----------GT-APAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSL 306 (1385)
Q Consensus 239 ~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~-----------~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~ 306 (1385)
.+|..+...+.....+.++|+|+|.......+ +. ...+++.+|+.+|+.+++......... .. ...
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~-~~~ 232 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-DF-KDY 232 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-CC-CCH
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-CC-CcH
Confidence 12222222222222467899999976532211 11 246889999999999999875321111 11 111
Q ss_pred HHHHHHHHHhcCCCchHHHHHhhhhcCCCCHHHHHHH-HhhhhhhhccccccchHHHH-Hhhh--cCChhhhhhhhhhcc
Q 035550 307 EEIGKKIVIKCNGLPLAAKTLGGLLRGKDDRREWEDV-LSSKIWELQEERCDIIPALR-VSYY--YLSAPLKQCFAYCSL 382 (1385)
Q Consensus 307 ~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~-l~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~k~cf~~~~~ 382 (1385)
..|++.++|+|+++..++..+........|..- .+... ..+...+. +.++ .+++..+..+..+|+
T Consensus 233 ----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~l~~~~~~~l~~la~ 301 (357)
T 2fna_A 233 ----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK-------KLILKEFENFLHGREIARKRYLNIMRTLSK 301 (357)
T ss_dssp ----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-------HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred ----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH-------HHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 679999999999999998876533233333221 11100 00111121 2221 688899999999998
Q ss_pred cCCCcccChHHHHHHHH-HcCCCccCCCCCcHHHHHHHHHHHHHHcCCccccCCCCCeEE-EchhHHHHH
Q 035550 383 FPKDYEFEEEEIILLWC-ASGFLGHKESGNPIEDLGRKFFQELRSRSFFQQSSNNESRFV-MHDLVNDLA 450 (1385)
Q Consensus 383 fp~~~~~~~~~li~~w~-a~g~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~-mhdlv~~~~ 450 (1385)
+. +...+....- ..|. .........+++.|++.+++.... ..|+ .|++++++.
T Consensus 302 ---g~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 ---CG--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLAF 356 (357)
T ss_dssp ---CB--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHHT
T ss_pred ---CC--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHhh
Confidence 22 4444433210 1121 011244678899999999998653 3566 478888764
No 97
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.51 E-value=2.6e-15 Score=173.44 Aligned_cols=65 Identities=15% Similarity=0.024 Sum_probs=26.7
Q ss_pred cCCCCCccceeeccccC-CCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEeccc
Q 035550 1205 GLHNLTSLQELTIGIGG-ALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGC 1272 (1385)
Q Consensus 1205 ~l~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 1272 (1385)
.+..+++|+.|++++|. +....+..+..+++|++|++++|....... ...+.++++|+.|++++|
T Consensus 217 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 217 LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET---LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG---GGGGGGCTTCCEEECTTS
T ss_pred HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH---HHHHhcCCCCCEEeccCc
Confidence 33344444444444444 222233334444444444444443111100 012344555555555554
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.50 E-value=4.4e-13 Score=154.77 Aligned_cols=169 Identities=19% Similarity=0.110 Sum_probs=105.8
Q ss_pred eEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccc-cCCCCC-ccceeecccc
Q 035550 1143 LVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPK-GLHNLT-SLQELTIGIG 1220 (1385)
Q Consensus 1143 L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~-~l~~l~-~L~~L~L~~n 1220 (1385)
+.+.+|++....|..|.++++|++|++++|.+....+..+....++..|++.++..+..+|. .|..++ .++.|++++|
T Consensus 85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164 (350)
T ss_dssp EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred hcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence 34444444444566677777777777777774444444455556677777766555555543 344443 5677777777
Q ss_pred CCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCCCCcccceee
Q 035550 1221 GALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLPASLTSLW 1300 (1385)
Q Consensus 1221 ~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~ 1300 (1385)
.+. .++.......+|+.|++++|+.+... .+..|..+++|++|++++|.. ..++ ...+.+|++|.
T Consensus 165 ~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i---~~~~f~~l~~L~~LdLs~N~l--~~lp---------~~~~~~L~~L~ 229 (350)
T 4ay9_X 165 GIQ-EIHNSAFNGTQLDELNLSDNNNLEEL---PNDVFHGASGPVILDISRTRI--HSLP---------SYGLENLKKLR 229 (350)
T ss_dssp CCC-EECTTSSTTEEEEEEECTTCTTCCCC---CTTTTTTEECCSEEECTTSCC--CCCC---------SSSCTTCCEEE
T ss_pred ccc-CCChhhccccchhHHhhccCCcccCC---CHHHhccCcccchhhcCCCCc--CccC---------hhhhccchHhh
Confidence 644 34434444567777777654433221 123567788888888887531 1111 12356788888
Q ss_pred cccccccccccccCCCCCCCCeEeccC
Q 035550 1301 IFNFPNLERLSSSIVDLQNLTELKLHN 1327 (1385)
Q Consensus 1301 l~~~~~l~~l~~~~~~l~~L~~L~l~~ 1327 (1385)
+.++++++.+| .+.++++|+.+++.+
T Consensus 230 ~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 230 ARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp CTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred hccCCCcCcCC-CchhCcChhhCcCCC
Confidence 88888999999 588999999999975
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.48 E-value=3.9e-15 Score=175.15 Aligned_cols=109 Identities=19% Similarity=0.158 Sum_probs=59.6
Q ss_pred cccceeEEcccCcc-hhhh---hhcCCCCCCcEEeecCCCCcc-----ccCCCCCCccCcceEEeccccCc----ccccc
Q 035550 1138 SSLKSLVVWSCSKL-ESIA---ERLDNNTSLETISIDSCGNLV-----SFPEGGLPCVKLRMLAITNCKRL----EALPK 1204 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~-~~~~---~~l~~l~~L~~L~L~~n~~l~-----~~~~~~~~l~~L~~L~L~~n~~~----~~lp~ 1204 (1385)
++|++|++++|.+. ..++ ..+..+++|++|+|++|.+.. .++..+..+++|++|+|++|.+. ..+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 36677777777665 3333 345566667777777766431 23335555666666666666643 44555
Q ss_pred cCCCCCccceeeccccCCCCC----CcccC--CCCCCcceeEecCCcc
Q 035550 1205 GLHNLTSLQELTIGIGGALPS----LEEED--GLPTNLQSLNIWGNME 1246 (1385)
Q Consensus 1205 ~l~~l~~L~~L~L~~n~~~~~----~~~~~--~~~~~L~~L~L~~n~~ 1246 (1385)
.+..+++|+.|+|++|.+... ++..+ +.+++|++|+|++|.+
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 555666666666666654332 23222 2245555555555543
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.47 E-value=1.6e-13 Score=145.58 Aligned_cols=171 Identities=15% Similarity=0.051 Sum_probs=134.9
Q ss_pred CCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCcccee
Q 035550 1136 LPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQEL 1215 (1385)
Q Consensus 1136 ~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L 1215 (1385)
++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+|++|.+.+..+..+..+++|++|
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 45689999999998887777778999999999999998654444556789999999999998776666668999999999
Q ss_pred eccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCCCCcc
Q 035550 1216 TIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLPAS 1295 (1385)
Q Consensus 1216 ~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 1295 (1385)
++++|.+.+..+..+..+++|++|++++|.+... .+..+..+++|+.|++++|. ....+++
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N~---------------~~~~~~~ 166 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV----PDGVFDRLTSLQYIWLHDNP---------------WDCTCPG 166 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSCC---------------BCCCTTT
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCcccee----CHHHhccCCCccEEEecCCC---------------eecCCCC
Confidence 9999988776666678899999999999975422 22457889999999999963 1234567
Q ss_pred cceeecccccccccccccCCCCCCCCeEeccCCC
Q 035550 1296 LTSLWIFNFPNLERLSSSIVDLQNLTELKLHNCP 1329 (1385)
Q Consensus 1296 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 1329 (1385)
|+.|+++.+..-+.+|..++.++. ++..|.
T Consensus 167 l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~ 196 (208)
T 2o6s_A 167 IRYLSEWINKHSGVVRNSAGSVAP----DSAKCS 196 (208)
T ss_dssp THHHHHHHHHCTTTBBCTTSSBCT----TCSBBT
T ss_pred HHHHHHHHHhCCceeeccCccccC----Cccccc
Confidence 888888887666678887776655 444553
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.47 E-value=7.4e-15 Score=170.74 Aligned_cols=136 Identities=9% Similarity=-0.021 Sum_probs=77.9
Q ss_pred cccceeEEcccCcch----hhhhhcCCCC-CCcEEeecCCCCccccCCC----CCCc-cCcceEEeccccCccc----cc
Q 035550 1138 SSLKSLVVWSCSKLE----SIAERLDNNT-SLETISIDSCGNLVSFPEG----GLPC-VKLRMLAITNCKRLEA----LP 1203 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~----~~~~~l~~l~-~L~~L~L~~n~~l~~~~~~----~~~l-~~L~~L~L~~n~~~~~----lp 1203 (1385)
++|++|++++|.+.. .++..+..++ +|++|+|++|.+....+.. +..+ ++|++|+|++|.+... ++
T Consensus 138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~ 217 (362)
T 3goz_A 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELA 217 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHH
Confidence 467777777776653 3444455554 7777777777643333221 2223 4777777777764442 34
Q ss_pred ccCCC-CCccceeeccccCCCCCCc----ccCCCCCCcceeEecCCc---chhhhhhhcCccCCCCCccceEEecccC
Q 035550 1204 KGLHN-LTSLQELTIGIGGALPSLE----EEDGLPTNLQSLNIWGNM---EIWKSMIERGRGFHRFSSLRYLLISGCD 1273 (1385)
Q Consensus 1204 ~~l~~-l~~L~~L~L~~n~~~~~~~----~~~~~~~~L~~L~L~~n~---~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1273 (1385)
..+.. .++|++|+|++|.+....+ ..+..+++|++|++++|. ............+.++++|+.|++++|.
T Consensus 218 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 44444 3477777777776554332 233556777777777775 2222222233456677777777777764
No 102
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.47 E-value=7.7e-15 Score=169.42 Aligned_cols=86 Identities=17% Similarity=0.149 Sum_probs=71.2
Q ss_pred cccC--CceeEEEEcCcccccccccccCCccccEEecccccccc--cchhhhccCCccEEecCCCcchhhhhhcccccCC
Q 035550 526 LFKL--QRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRT--LPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIK 601 (1385)
Q Consensus 526 ~~~l--~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~--lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 601 (1385)
+..+ +.+++|++++|.+...+..+..+.+|++|+|++|.+.. +|..+..+++|++|++++|......|..++++++
T Consensus 64 ~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~ 143 (336)
T 2ast_B 64 TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN 143 (336)
T ss_dssp HHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTT
T ss_pred HHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCC
Confidence 4555 78899999999888777667788999999999998873 7888888999999999988655577888888999
Q ss_pred CCeeecCCCC
Q 035550 602 LHHLDNLDTG 611 (1385)
Q Consensus 602 L~~L~l~~~~ 611 (1385)
|++|++++|.
T Consensus 144 L~~L~L~~~~ 153 (336)
T 2ast_B 144 LVRLNLSGCS 153 (336)
T ss_dssp CSEEECTTCB
T ss_pred CCEEECCCCC
Confidence 9999998884
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.43 E-value=2.5e-13 Score=151.90 Aligned_cols=170 Identities=18% Similarity=0.247 Sum_probs=125.5
Q ss_pred cccCCceeEEEEcCcccccccccccCCccccEEecccccccccchhhhccCCccEEecCCCcchhhhhhcccccCCCCee
Q 035550 526 LFKLQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHL 605 (1385)
Q Consensus 526 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 605 (1385)
+..+++|++|++++|.++.+|. ++.+.+|++|+|++|+++.+|. +..+++|++|++++| .+..+|. ++.+++|++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEE
T ss_pred hhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEE
Confidence 4678889999999999998864 8889999999999999998887 999999999999997 4666654 8999999999
Q ss_pred ecCCCCCcccccCCCCcccccccccceEecCCCCcChhhhcccccccceeEEeccCCCCCcchhHHhhcCCCCCCceEEE
Q 035550 606 DNLDTGSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGIRELKLLTHLRGTLNISKLENVKDIGDAKEAQLDGKKNLKVLKF 685 (1385)
Q Consensus 606 ~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 685 (1385)
++++| .+..++ .++.++ +|+.|++
T Consensus 118 ~L~~n-~i~~~~-~l~~l~------------------------------------------------------~L~~L~l 141 (291)
T 1h6t_A 118 SLEHN-GISDIN-GLVHLP------------------------------------------------------QLESLYL 141 (291)
T ss_dssp ECTTS-CCCCCG-GGGGCT------------------------------------------------------TCCEEEC
T ss_pred ECCCC-cCCCCh-hhcCCC------------------------------------------------------CCCEEEc
Confidence 99998 455442 233333 3444444
Q ss_pred EEccCCCCCCchhhhhHHhhcccCCCCCCccceEEeccCCCCCCcccCCCCcccccEEEeeCCCCCCCCCCCCCCCCCCe
Q 035550 686 QWTQSTNDLSSREAETEKDVLVMLKPHENLEQFCISGYEGKEFPTWLGDSSFSNLATLKFEDCGVCTTLPSVGQLPSLKH 765 (1385)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~ 765 (1385)
++|.+... ..+..+++|+.|++++|....++. +. .+++|+.|++++|.+.. ++.+..+++|+.
T Consensus 142 ~~n~l~~~-------------~~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~ 204 (291)
T 1h6t_A 142 GNNKITDI-------------TVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNHISD-LRALAGLKNLDV 204 (291)
T ss_dssp CSSCCCCC-------------GGGGGCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCCCB-CGGGTTCTTCSE
T ss_pred cCCcCCcc-------------hhhccCCCCCEEEccCCccccchh-hc--CCCccCEEECCCCcCCC-ChhhccCCCCCE
Confidence 44443211 124455677777777777766665 32 47888888888887743 566888888888
Q ss_pred EEEcCCc
Q 035550 766 LEVRGMR 772 (1385)
Q Consensus 766 L~L~~~~ 772 (1385)
|++++|+
T Consensus 205 L~l~~n~ 211 (291)
T 1h6t_A 205 LELFSQE 211 (291)
T ss_dssp EEEEEEE
T ss_pred EECcCCc
Confidence 8888874
No 104
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.43 E-value=2.1e-14 Score=168.99 Aligned_cols=110 Identities=15% Similarity=0.084 Sum_probs=88.2
Q ss_pred cccceeEEcccCcch-----hhhhhcCCCCCCcEEeecCCCCc----cccCCCCCCccCcceEEeccccCccc----ccc
Q 035550 1138 SSLKSLVVWSCSKLE-----SIAERLDNNTSLETISIDSCGNL----VSFPEGGLPCVKLRMLAITNCKRLEA----LPK 1204 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~-----~~~~~l~~l~~L~~L~L~~n~~l----~~~~~~~~~l~~L~~L~L~~n~~~~~----lp~ 1204 (1385)
++|++|++++|.+.. ..+..+..+++|++|+|++|.+. ..+|..+..+++|++|+|++|.+.+. +|.
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence 589999999998763 34547889999999999999964 66777788889999999999997665 566
Q ss_pred cC--CCCCccceeeccccCCCC----CCcccC-CCCCCcceeEecCCcch
Q 035550 1205 GL--HNLTSLQELTIGIGGALP----SLEEED-GLPTNLQSLNIWGNMEI 1247 (1385)
Q Consensus 1205 ~l--~~l~~L~~L~L~~n~~~~----~~~~~~-~~~~~L~~L~L~~n~~~ 1247 (1385)
.+ ..+++|+.|+|++|.+.. .+|..+ ..+++|++|++++|++.
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 66 348999999999998776 366555 45788888888888754
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.41 E-value=7.9e-13 Score=160.04 Aligned_cols=92 Identities=25% Similarity=0.401 Sum_probs=60.7
Q ss_pred ccccEEEeccCCCCCcCcccccCCCCccEEEeccCCCcccccCccCccccceEEeecCCCCCCCCcccccCCCCCcceEE
Q 035550 972 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEILN 1051 (1385)
Q Consensus 972 ~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 1051 (1385)
.+|++|++++|... .+|..+ +++|++|++++| .++.+| ..+++|+.|++++|. ++.+|. +. . +|++|+
T Consensus 59 ~~L~~L~Ls~n~L~-~lp~~l--~~~L~~L~Ls~N-~l~~ip--~~l~~L~~L~Ls~N~-l~~ip~-l~--~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNLS-SLPDNL--PPQITVLEITQN-ALISLP--ELPASLEYLDACDNR-LSTLPE-LP--A--SLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCCS-CCCSCC--CTTCSEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCCC-CC--T--TCCEEE
T ss_pred CCccEEEeCCCCCC-ccCHhH--cCCCCEEECcCC-CCcccc--cccCCCCEEEccCCC-CCCcch-hh--c--CCCEEE
Confidence 47889999888754 477655 378999999988 556777 567888888888886 455765 32 1 677777
Q ss_pred eecCCCCccccccCCCCCcceEEeccC
Q 035550 1052 IEDCHSLTYIAAVQLPPSLKQLEIYNC 1078 (1385)
Q Consensus 1052 l~~~~~l~~~~~~~~~~~L~~L~l~~~ 1078 (1385)
+++|.... ++. .+++|+.|++++|
T Consensus 127 Ls~N~l~~-lp~--~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 127 VDNNQLTM-LPE--LPALLEYINADNN 150 (571)
T ss_dssp CCSSCCSC-CCC--CCTTCCEEECCSS
T ss_pred CCCCcCCC-CCC--cCccccEEeCCCC
Confidence 77765332 322 3444444444444
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.41 E-value=4.7e-13 Score=140.23 Aligned_cols=104 Identities=15% Similarity=0.112 Sum_probs=55.9
Q ss_pred cccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeec
Q 035550 1138 SSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTI 1217 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L 1217 (1385)
++|+.|++++|.+. .+| .+..+++|++|++++|. +..++ .+..+++|++|++++|.+.+..|..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 35566666665444 333 35556666666666663 22222 3445556666666666555545555555566666666
Q ss_pred cccCCCCCCcccCCCCCCcceeEecCCc
Q 035550 1218 GIGGALPSLEEEDGLPTNLQSLNIWGNM 1245 (1385)
Q Consensus 1218 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 1245 (1385)
++|.+....+..++.+++|++|++++|.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 6555544444445555555555555554
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.38 E-value=1.1e-12 Score=146.76 Aligned_cols=172 Identities=16% Similarity=0.137 Sum_probs=127.5
Q ss_pred cccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeec
Q 035550 1138 SSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTI 1217 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L 1217 (1385)
++|+.|++++|.+... + .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+ +| .+..+++|+.|++
T Consensus 46 ~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred CcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEEC
Confidence 5788888888865543 3 37778889999999888544 443 7788889999999887544 44 3888889999999
Q ss_pred cccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCCCCcccc
Q 035550 1218 GIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLPASLT 1297 (1385)
Q Consensus 1218 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~ 1297 (1385)
++|.+.. ++ .+..+++|++|++++|.+... ..+..+++|+.|++++|... . +. .+..+++|+
T Consensus 120 ~~n~i~~-~~-~l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~L~~N~l~--~-------~~-~l~~l~~L~ 181 (291)
T 1h6t_A 120 EHNGISD-IN-GLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQIS--D-------IV-PLAGLTKLQ 181 (291)
T ss_dssp TTSCCCC-CG-GGGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCC--C-------CG-GGTTCTTCC
T ss_pred CCCcCCC-Ch-hhcCCCCCCEEEccCCcCCcc------hhhccCCCCCEEEccCCccc--c-------ch-hhcCCCccC
Confidence 8887554 33 567788899999998875432 35778888999999887421 1 11 145678899
Q ss_pred eeecccccccccccccCCCCCCCCeEeccCCCCCCCCCC
Q 035550 1298 SLWIFNFPNLERLSSSIVDLQNLTELKLHNCPKLKYFPE 1336 (1385)
Q Consensus 1298 ~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 1336 (1385)
.|++++| .++.++ .+..+++|+.|++++|+ +...|.
T Consensus 182 ~L~L~~N-~i~~l~-~l~~l~~L~~L~l~~n~-i~~~~~ 217 (291)
T 1h6t_A 182 NLYLSKN-HISDLR-ALAGLKNLDVLELFSQE-CLNKPI 217 (291)
T ss_dssp EEECCSS-CCCBCG-GGTTCTTCSEEEEEEEE-EECCCE
T ss_pred EEECCCC-cCCCCh-hhccCCCCCEEECcCCc-ccCCcc
Confidence 9999886 778887 48889999999999975 665543
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.37 E-value=2.5e-14 Score=166.30 Aligned_cols=238 Identities=16% Similarity=0.062 Sum_probs=138.6
Q ss_pred CCccEEEeccCCCcccccccCCCchhhhccccCCCCcccceeEEcccCcchhhhhhcCCC-----CCCcEEeecCCCCcc
Q 035550 1102 SLLEELHISSCQSLTCIFSKNELPATLESLEVGNLPSSLKSLVVWSCSKLESIAERLDNN-----TSLETISIDSCGNLV 1176 (1385)
Q Consensus 1102 ~~L~~L~l~~c~~L~~l~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l-----~~L~~L~L~~n~~l~ 1176 (1385)
++|+.|++++|. ++.... ..+...+ ..+|.+|++|++++|.+....+..+..+ ++|++|+|++|.+..
T Consensus 22 ~~L~~L~Ls~n~-l~~~~~-~~l~~~l-----~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 22 HGVTSLDLSLNN-LYSIST-VELIQAF-----ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY 94 (362)
T ss_dssp TTCCEEECTTSC-GGGSCH-HHHHHHH-----HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred CCceEEEccCCC-CChHHH-HHHHHHH-----HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence 448888888875 322100 0000112 2233378888888887776655555443 888888888888544
Q ss_pred ccCCC----CCCc-cCcceEEeccccCccccccc----CCC-CCccceeeccccCCCCCC----cccCCCC-CCcceeEe
Q 035550 1177 SFPEG----GLPC-VKLRMLAITNCKRLEALPKG----LHN-LTSLQELTIGIGGALPSL----EEEDGLP-TNLQSLNI 1241 (1385)
Q Consensus 1177 ~~~~~----~~~l-~~L~~L~L~~n~~~~~lp~~----l~~-l~~L~~L~L~~n~~~~~~----~~~~~~~-~~L~~L~L 1241 (1385)
..+.. +..+ ++|++|+|++|.+.+..+.. +.. .++|++|++++|.+.... +..+..+ ++|++|+|
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 174 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL 174 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeee
Confidence 33332 2233 68888888888865554433 334 358888888888766432 2223333 48888888
Q ss_pred cCCcchhhhhhhcCccCCCC-CccceEEecccCCccccchhhhhhccCcCCC-Ccccceeecccccccccc-----cccC
Q 035550 1242 WGNMEIWKSMIERGRGFHRF-SSLRYLLISGCDDDMVSFALEDKRLGTALPL-PASLTSLWIFNFPNLERL-----SSSI 1314 (1385)
Q Consensus 1242 ~~n~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~-~~~L~~L~l~~~~~l~~l-----~~~~ 1314 (1385)
++|++...........+..+ ++|++|+|++|....... ..+...+.. +++|++|++++| .++.. ...+
T Consensus 175 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~----~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~ 249 (362)
T 3goz_A 175 RGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY----AELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLK 249 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH----HHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTT
T ss_pred cCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH----HHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHH
Confidence 88875443332222334555 488888888875211110 011112222 457888888886 45443 2345
Q ss_pred CCCCCCCeEeccCCCCCCCCCC---------CCCCCccceeeecCCh
Q 035550 1315 VDLQNLTELKLHNCPKLKYFPE---------KGLPSSLLQLQIVGCP 1352 (1385)
Q Consensus 1315 ~~l~~L~~L~l~~c~~l~~l~~---------~~~~~sL~~L~i~~c~ 1352 (1385)
..+++|++|++++|. +..++. ..-.++|+.|++++++
T Consensus 250 ~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 250 DSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred hcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 777888888888874 333322 1123568888888875
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.36 E-value=2.2e-12 Score=137.41 Aligned_cols=134 Identities=14% Similarity=0.038 Sum_probs=113.2
Q ss_pred CCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCcccee
Q 035550 1136 LPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQEL 1215 (1385)
Q Consensus 1136 ~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L 1215 (1385)
+|++|+.|++++|.+.+..+..|..+++|++|+|++|.+.+..|..+..+++|++|+|++|.+....+..|..+++|+.|
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEE
Confidence 45789999999998888777789999999999999999777778889999999999999998665555567899999999
Q ss_pred eccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccC
Q 035550 1216 TIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCD 1273 (1385)
Q Consensus 1216 ~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1273 (1385)
+|++|.+.+..|..+..+++|++|+|++|.+... .+..+..+++|+.|++++|.
T Consensus 110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI----AKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEE----CHHHHhCCCCCCEEEeCCCC
Confidence 9999998888888888999999999999985432 22457888999999999863
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.36 E-value=8.8e-13 Score=161.85 Aligned_cols=170 Identities=18% Similarity=0.244 Sum_probs=122.4
Q ss_pred cccCCceeEEEEcCcccccccccccCCccccEEecccccccccchhhhccCCccEEecCCCcchhhhhhcccccCCCCee
Q 035550 526 LFKLQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHL 605 (1385)
Q Consensus 526 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 605 (1385)
+..+.+|+.|++++|.|..+| .|+.|.+|++|+|++|.+..+|. +..|++|++|+|++| .+..+| .+..+++|++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEE
Confidence 467788889999999988886 58889999999999999988876 888999999999987 556655 68888999999
Q ss_pred ecCCCCCcccccCCCCcccccccccceEecCCCCcChhhhcccccccceeEEeccCCCCCcchhHHhhcCCCCCCceEEE
Q 035550 606 DNLDTGSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGIRELKLLTHLRGTLNISKLENVKDIGDAKEAQLDGKKNLKVLKF 685 (1385)
Q Consensus 606 ~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 685 (1385)
++++| .+..+| .++.|++ |+.|+|
T Consensus 115 ~Ls~N-~l~~l~-~l~~l~~------------------------------------------------------L~~L~L 138 (605)
T 1m9s_A 115 SLEHN-GISDIN-GLVHLPQ------------------------------------------------------LESLYL 138 (605)
T ss_dssp ECTTS-CCCCCG-GGGGCTT------------------------------------------------------CSEEEC
T ss_pred EecCC-CCCCCc-cccCCCc------------------------------------------------------cCEEEC
Confidence 99888 454442 2333333 444444
Q ss_pred EEccCCCCCCchhhhhHHhhcccCCCCCCccceEEeccCCCCCCcccCCCCcccccEEEeeCCCCCCCCCCCCCCCCCCe
Q 035550 686 QWTQSTNDLSSREAETEKDVLVMLKPHENLEQFCISGYEGKEFPTWLGDSSFSNLATLKFEDCGVCTTLPSVGQLPSLKH 765 (1385)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~ 765 (1385)
+.|.+... ..+..+++|+.|+|++|....++. +. .+++|+.|+|++|.+.. ++.+..+++|+.
T Consensus 139 s~N~l~~l-------------~~l~~l~~L~~L~Ls~N~l~~~~~-l~--~l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~ 201 (605)
T 1m9s_A 139 GNNKITDI-------------TVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNHISD-LRALAGLKNLDV 201 (605)
T ss_dssp CSSCCCCC-------------GGGGSCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCCCB-CGGGTTCTTCSE
T ss_pred CCCccCCc-------------hhhcccCCCCEEECcCCcCCCchh-hc--cCCCCCEEECcCCCCCC-ChHHccCCCCCE
Confidence 44443211 124455677777777776666655 33 37888888888887754 467888888888
Q ss_pred EEEcCCc
Q 035550 766 LEVRGMR 772 (1385)
Q Consensus 766 L~L~~~~ 772 (1385)
|+|++|.
T Consensus 202 L~L~~N~ 208 (605)
T 1m9s_A 202 LELFSQE 208 (605)
T ss_dssp EECCSEE
T ss_pred EEccCCc
Confidence 8888874
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.35 E-value=3.4e-12 Score=154.51 Aligned_cols=176 Identities=22% Similarity=0.264 Sum_probs=113.4
Q ss_pred CCccEEEeccCCCcccccccCCCchhhhccccCCCCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCC
Q 035550 1102 SLLEELHISSCQSLTCIFSKNELPATLESLEVGNLPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEG 1181 (1385)
Q Consensus 1102 ~~L~~L~l~~c~~L~~l~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~ 1181 (1385)
.+|+.|+++++. ++.+ |. .++++|++|++++|.+. .+| ..+++|++|+|++|.+.+ +|.
T Consensus 59 ~~L~~L~Ls~n~-L~~l------p~--------~l~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~- 117 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSL------PD--------NLPPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE- 117 (571)
T ss_dssp TTCSEEECCSSC-CSCC------CS--------CCCTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-
T ss_pred CCccEEEeCCCC-CCcc------CH--------hHcCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-
Confidence 467777777653 2221 11 12357888888888665 455 446788888888887444 666
Q ss_pred CCCccCcceEEeccccCcccccccCCCCCccceeeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCC
Q 035550 1182 GLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRF 1261 (1385)
Q Consensus 1182 ~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l 1261 (1385)
+.. +|++|+|++|.+.+ +|. .+++|+.|++++|.+.+ +|. .+++|++|+|++|++.. .|. +.
T Consensus 118 l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-----lp~-l~-- 179 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-----LPE-LP-- 179 (571)
T ss_dssp CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-----CCC-CC--
T ss_pred hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-----cch-hh--
Confidence 544 78888888887555 665 57788888888877554 553 56788888888887432 222 33
Q ss_pred CccceEEecccCCccccchhhhhhccCcCCCCccc-------ceeecccccccccccccCCCCCCCCeEeccCCC
Q 035550 1262 SSLRYLLISGCDDDMVSFALEDKRLGTALPLPASL-------TSLWIFNFPNLERLSSSIVDLQNLTELKLHNCP 1329 (1385)
Q Consensus 1262 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~L-------~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 1329 (1385)
++|+.|+|++|... .+ +. ...+| +.|++++| .++.+|..+..+++|+.|+|++|+
T Consensus 180 ~~L~~L~Ls~N~L~--~l-------p~---~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 180 ESLEALDVSTNLLE--SL-------PA---VPVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp TTCCEEECCSSCCS--SC-------CC---CC--------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSS
T ss_pred CCCCEEECcCCCCC--ch-------hh---HHHhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCc
Confidence 77888888876421 11 11 11245 77888775 677777777778888888888765
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.35 E-value=1.9e-12 Score=135.54 Aligned_cols=152 Identities=14% Similarity=0.089 Sum_probs=104.4
Q ss_pred CCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeeccccCCCCCCcccCCCCCCcce
Q 035550 1159 DNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIGGALPSLEEEDGLPTNLQS 1238 (1385)
Q Consensus 1159 ~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~ 1238 (1385)
..+++|++|++++|. +..+| .+..+++|++|++++|. ...+ ..+..+++|++|++++|.+....+..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n~-~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESCC-CSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCCC-CCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 456789999999988 44666 67788899999999995 3333 36788899999999998877766777888888888
Q ss_pred eEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCCCCcccceeecccccccccccccCCCCC
Q 035550 1239 LNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLPASLTSLWIFNFPNLERLSSSIVDLQ 1318 (1385)
Q Consensus 1239 L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~ 1318 (1385)
|++++|.+..... ..+..+++|++|++++|. .++.+| .+..++
T Consensus 117 L~Ls~n~i~~~~~----~~l~~l~~L~~L~L~~n~--------------------------------~i~~~~-~l~~l~ 159 (197)
T 4ezg_A 117 LDISHSAHDDSIL----TKINTLPKVNSIDLSYNG--------------------------------AITDIM-PLKTLP 159 (197)
T ss_dssp EECCSSBCBGGGH----HHHTTCSSCCEEECCSCT--------------------------------BCCCCG-GGGGCS
T ss_pred EEecCCccCcHhH----HHHhhCCCCCEEEccCCC--------------------------------CccccH-hhcCCC
Confidence 8888887543222 345677777777777752 233444 455566
Q ss_pred CCCeEeccCCCCCCCCCCCCCCCccceeeecCCh
Q 035550 1319 NLTELKLHNCPKLKYFPEKGLPSSLLQLQIVGCP 1352 (1385)
Q Consensus 1319 ~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~ 1352 (1385)
+|++|++++| .++.++...-.++|+.|++++++
T Consensus 160 ~L~~L~l~~n-~i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 160 ELKSLNIQFD-GVHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SCCEEECTTB-CCCCCTTGGGCSSCCEEEECBC-
T ss_pred CCCEEECCCC-CCcChHHhccCCCCCEEEeeCcc
Confidence 6666666665 35555533334566666666654
No 113
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.35 E-value=1.4e-11 Score=145.34 Aligned_cols=295 Identities=13% Similarity=0.052 Sum_probs=179.5
Q ss_pred CCeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccc----ccCCcEEEEEeCCCCCHHHH
Q 035550 116 EAKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQ----DHFDLKAWTCVSDDFDVIRL 191 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~ 191 (1385)
+..++||+++++++..++...- .....+.+.|+|++|+||||+|+.+++..... +.-...+|+++....+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 3679999999999999885431 11234678899999999999999999742111 00234678888888888999
Q ss_pred HHHHHHHhcCCCCCCccCHHHHHHHHHhHc--CCCeEEEEEecCCCCCcc--ccccccCcccCC-----CCCcEEEEEcc
Q 035550 192 TKSILLSIASDQIVDNHDLNKLQEELKKKL--SPKKFLLVLDDVWNENYN--DWDRLRPPFEAG-----APGSKIIVTAR 262 (1385)
Q Consensus 192 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~~~--~~~~l~~~l~~~-----~~gs~ilvTtR 262 (1385)
+..++.+++............+.+.+.+.+ .+++.+|||||++.-... ..+.+...+... ..+..+|.||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 999999987644333344566666666666 356899999999432111 112222212111 34567888887
Q ss_pred chhHhh----hh-CC--CCcccCCCCChhhhHHHhhhhcc---CcCCCCCchhHHHHHHHHHHhcC---CCch-HHHHHh
Q 035550 263 NQGVAA----IM-GT--APAYQLKKLSNDDCLSVFAQHSL---GTRDFSSNKSLEEIGKKIVIKCN---GLPL-AAKTLG 328 (1385)
Q Consensus 263 ~~~v~~----~~-~~--~~~~~l~~L~~~~~~~lf~~~a~---~~~~~~~~~~~~~~~~~i~~~~~---g~PL-ai~~~~ 328 (1385)
...... .. .. ...+.+++++.++..+++...+. .... ..+ +..+.++++++ |.|- |+.++.
T Consensus 176 ~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~G~~r~~~~~l~ 250 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGV-LDP----DVVPLCAALAAREHGDARRALDLLR 250 (387)
T ss_dssp CSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTT-BCS----SHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCC-CCH----HHHHHHHHHHHHhccCHHHHHHHHH
Confidence 653211 11 11 14789999999999999988742 2111 111 34455777777 9993 333332
Q ss_pred hhhc-----CC--CCHHHHHHHHhhhhhhhccccccchHHHHHhhhcCChhhhhhhhhhc-ccCCCcccChHHHHHHHH-
Q 035550 329 GLLR-----GK--DDRREWEDVLSSKIWELQEERCDIIPALRVSYYYLSAPLKQCFAYCS-LFPKDYEFEEEEIILLWC- 399 (1385)
Q Consensus 329 ~~l~-----~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~-~fp~~~~~~~~~li~~w~- 399 (1385)
.+.. +. -+.+.+..+++... ...+.-++..|+++.+..+..++ ++.....+...++.+...
T Consensus 251 ~a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
T 2v1u_A 251 VAGEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKE 320 (387)
T ss_dssp HHHHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 2221 11 23556666654321 12355678899998888777666 443223444554433321
Q ss_pred ---HcCCCccCCCCCcHHHHHHHHHHHHHHcCCcccc
Q 035550 400 ---ASGFLGHKESGNPIEDLGRKFFQELRSRSFFQQS 433 (1385)
Q Consensus 400 ---a~g~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~ 433 (1385)
..| . .......+..+++.|...++++..
T Consensus 321 ~~~~~~-~-----~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 321 LTSTLG-L-----EHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHTT-C-----CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhcC-C-----CCCCHHHHHHHHHHHHhCCCeEEE
Confidence 122 1 112245678899999999999873
No 114
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=3.4e-11 Score=141.58 Aligned_cols=293 Identities=11% Similarity=0.019 Sum_probs=177.5
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccc----cc--CCcEEEEEeCCCC-CHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQ----DH--FDLKAWTCVSDDF-DVI 189 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~----~~--f~~~~wv~~~~~~-~~~ 189 (1385)
..++||+++++++..++.... .....+.+.|+|++|+||||+|+.+++..... .. ...++|+++.... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFV--KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHH--TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 679999999999998885421 11234689999999999999999999742111 01 3456788877766 788
Q ss_pred HHHHHHHHHhcCCCC-CCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccccccc-cCcccCCCCCcEEEEEccchhHh
Q 035550 190 RLTKSILLSIASDQI-VDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRL-RPPFEAGAPGSKIIVTARNQGVA 267 (1385)
Q Consensus 190 ~~~~~i~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l-~~~l~~~~~gs~ilvTtR~~~v~ 267 (1385)
.++..++.++.+... ........+.+.+.+.++.++.+|||||++.-....+... ...+.....+..||+||+.....
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchH
Confidence 888998888843322 1223345667777788877666999999944211111121 11221111677899999875321
Q ss_pred ----hhh--CCCCcccCCCCChhhhHHHhhhhcc---CcCCCCCchhHHHHHHHHHHhcC---CCch-HHHHHhhhh--c
Q 035550 268 ----AIM--GTAPAYQLKKLSNDDCLSVFAQHSL---GTRDFSSNKSLEEIGKKIVIKCN---GLPL-AAKTLGGLL--R 332 (1385)
Q Consensus 268 ----~~~--~~~~~~~l~~L~~~~~~~lf~~~a~---~~~~~~~~~~~~~~~~~i~~~~~---g~PL-ai~~~~~~l--~ 332 (1385)
..+ .-...+++++++.++..+++...+. .... ..+ +..+.|++.++ |.|. |+..+..+. .
T Consensus 178 ~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~-~~~----~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 178 DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGT-YDD----EILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTS-CCS----HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCC-cCH----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 111 1123899999999999999998743 2111 122 34455777777 8886 444333322 1
Q ss_pred ---CCCCHHHHHHHHhhhhhhhccccccchHHHHHhhhcCChhhhhhhhhhcccCCCcccChHHHHHHHHHcCCCccCCC
Q 035550 333 ---GKDDRREWEDVLSSKIWELQEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLGHKES 409 (1385)
Q Consensus 333 ---~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~~~~~~li~~w~a~g~~~~~~~ 409 (1385)
..-+.+.+..+++... ...+.-++..|+++.|..+..++....+-.+. ..+ .-+++.+ + .
T Consensus 253 ~~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~--~~~-~~~~~~~-g---~ 315 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIESEDVMSAH--KMY-TDLCNKF-K---Q 315 (384)
T ss_dssp TSSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH--HHH-HHHHHHT-T---C
T ss_pred cCCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH--HHH-HHHHHHc-C---C
Confidence 1224667776665431 13466778899988888777776611101111 011 1122211 0 0
Q ss_pred CCcHHHHHHHHHHHHHHcCCcccc
Q 035550 410 GNPIEDLGRKFFQELRSRSFFQQS 433 (1385)
Q Consensus 410 ~~~~~~~~~~~~~~L~~~sll~~~ 433 (1385)
.........+++..|..+++++..
T Consensus 316 ~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 316 KPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEE
Confidence 111235567889999999999863
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.32 E-value=7.7e-13 Score=145.33 Aligned_cols=167 Identities=20% Similarity=0.220 Sum_probs=98.4
Q ss_pred cCCceeEEEEcCcccccccccccCCccccEEecccccccccchhhhccCCccEEecCCCcchhhhhhcccccCCCCeeec
Q 035550 528 KLQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLDN 607 (1385)
Q Consensus 528 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 607 (1385)
.+..+..++++++.++.++ .+..+.+|++|++++|.|+.+| .+..+++|++|++++| .+..+|. +.++++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 3444555556666666555 4556666666666666666665 5666666666666665 3444544 666666666666
Q ss_pred CCCCCcccccCCCCcccccccccceEecCCCCcChhhhcccccccceeEEeccCCCCCcchhHHhhcCCCCCCceEEEEE
Q 035550 608 LDTGSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGIRELKLLTHLRGTLNISKLENVKDIGDAKEAQLDGKKNLKVLKFQW 687 (1385)
Q Consensus 608 ~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 687 (1385)
++| .+..+|.... .+|+.|++++
T Consensus 93 ~~N-~l~~l~~~~~--------------------------------------------------------~~L~~L~L~~ 115 (263)
T 1xeu_A 93 NRN-RLKNLNGIPS--------------------------------------------------------ACLSRLFLDN 115 (263)
T ss_dssp CSS-CCSCCTTCCC--------------------------------------------------------SSCCEEECCS
T ss_pred CCC-ccCCcCcccc--------------------------------------------------------CcccEEEccC
Confidence 666 3333332110 2333333333
Q ss_pred ccCCCCCCchhhhhHHhhcccCCCCCCccceEEeccCCCCCCcccCCCCcccccEEEeeCCCCCCCCCCCCCCCCCCeEE
Q 035550 688 TQSTNDLSSREAETEKDVLVMLKPHENLEQFCISGYEGKEFPTWLGDSSFSNLATLKFEDCGVCTTLPSVGQLPSLKHLE 767 (1385)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~ 767 (1385)
|.+.. +..+..+++|+.|++++|....+| .+. .+++|+.|++++|.+... +.+..+++|+.|+
T Consensus 116 N~l~~-------------~~~l~~l~~L~~L~Ls~N~i~~~~-~l~--~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~ 178 (263)
T 1xeu_A 116 NELRD-------------TDSLIHLKNLEILSIRNNKLKSIV-MLG--FLSKLEVLDLHGNEITNT-GGLTRLKKVNWID 178 (263)
T ss_dssp SCCSB-------------SGGGTTCTTCCEEECTTSCCCBCG-GGG--GCTTCCEEECTTSCCCBC-TTSTTCCCCCEEE
T ss_pred CccCC-------------ChhhcCcccccEEECCCCcCCCCh-HHc--cCCCCCEEECCCCcCcch-HHhccCCCCCEEe
Confidence 33221 012344556666666666666665 332 378888999988887655 7788889999999
Q ss_pred EcCCc
Q 035550 768 VRGMR 772 (1385)
Q Consensus 768 L~~~~ 772 (1385)
+++|.
T Consensus 179 l~~N~ 183 (263)
T 1xeu_A 179 LTGQK 183 (263)
T ss_dssp EEEEE
T ss_pred CCCCc
Confidence 98874
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.32 E-value=7.2e-12 Score=133.46 Aligned_cols=125 Identities=19% Similarity=0.114 Sum_probs=94.4
Q ss_pred ceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeecccc
Q 035550 1141 KSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIG 1220 (1385)
Q Consensus 1141 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n 1220 (1385)
+.++++++.+ ..+|..+. ++|+.|+|++|.+.+..+..+..+++|++|+|++|.+.+..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l-~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGL-TEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCC-SSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCc-CcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 4566666543 34554443 68999999999866555557888899999999999988777888999999999999999
Q ss_pred CCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEeccc
Q 035550 1221 GALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGC 1272 (1385)
Q Consensus 1221 ~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 1272 (1385)
.+....+..+..+++|++|+|++|.+... .+..|..+++|+.|+|++|
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCL----RVDAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSS
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEe----CHHHcCCCCCCCEEECCCC
Confidence 87766555677888999999998874422 2355777788888888875
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.31 E-value=3e-12 Score=148.42 Aligned_cols=134 Identities=17% Similarity=0.033 Sum_probs=107.7
Q ss_pred CCcccceeEEcccCcchhhhhhcC-CCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccce
Q 035550 1136 LPSSLKSLVVWSCSKLESIAERLD-NNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQE 1214 (1385)
Q Consensus 1136 ~~~~L~~L~L~~~~~~~~~~~~l~-~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~ 1214 (1385)
+|+.++.|+|++|.+.+..+..+. ++++|++|+|++|.+....+..+..+++|++|+|++|.+....+..|.++++|+.
T Consensus 37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV 116 (361)
T ss_dssp CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCE
Confidence 456789999999988887777777 8999999999999866655667888999999999999876666667889999999
Q ss_pred eeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccC---CCCCccceEEecccC
Q 035550 1215 LTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGF---HRFSSLRYLLISGCD 1273 (1385)
Q Consensus 1215 L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~ 1273 (1385)
|+|++|.+....|..+..+++|++|+|++|.+..... ..+ ..+++|+.|+|++|.
T Consensus 117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV----ELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG----GGTC----CTTCCEEECCSSC
T ss_pred EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH----HHhcCcccCCcCCEEECCCCC
Confidence 9999999887778888889999999999997543221 223 568888999998864
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.31 E-value=1e-11 Score=133.21 Aligned_cols=106 Identities=15% Similarity=0.053 Sum_probs=53.6
Q ss_pred cccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccC-CCCCCccCcceEEeccccCcccccccCCCCCccceee
Q 035550 1138 SSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFP-EGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELT 1216 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~-~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~ 1216 (1385)
++|++|+|++|.+.+..|..|.++++|++|+|++|.+ +.+| ..+..+++|++|+|++|.+.+..+..+..+++|+.|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 4555555555555555555555555555555555553 2232 2334455555555555554433333445555555555
Q ss_pred ccccCCCCCCcccCCCCCCcceeEecCCc
Q 035550 1217 IGIGGALPSLEEEDGLPTNLQSLNIWGNM 1245 (1385)
Q Consensus 1217 L~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 1245 (1385)
+++|.+. .+|..+..+++|++|+|++|.
T Consensus 119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp CCSSCCC-SCCTTGGGCTTCSEEECCSSC
T ss_pred ccCCccc-ccCcccccCCCCCEEECCCCc
Confidence 5555433 444444445555555555554
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.30 E-value=6.1e-12 Score=135.05 Aligned_cols=131 Identities=19% Similarity=0.115 Sum_probs=74.5
Q ss_pred CCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeeccccCCCCCCcccCCCCCCcceeEe
Q 035550 1162 TSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIGGALPSLEEEDGLPTNLQSLNI 1241 (1385)
Q Consensus 1162 ~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L 1241 (1385)
++|++|+|++|.+.+..|..+..+++|++|+|++|.+....+..|..+++|+.|+|++|.+....+..+..+++|++|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 56666666666655555555666666666666666643333344566666666666666655544444566666666666
Q ss_pred cCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCCCCcccceeeccccc
Q 035550 1242 WGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLPASLTSLWIFNFP 1305 (1385)
Q Consensus 1242 ~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 1305 (1385)
++|.+. ..+..+..+++|++|+|++|... .++ ...+..+++|+.|++.+++
T Consensus 120 s~N~l~-----~lp~~~~~l~~L~~L~L~~N~l~--~~~------~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 120 CCNKLT-----ELPRGIERLTHLTHLALDQNQLK--SIP------HGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CSSCCC-----SCCTTGGGCTTCSEEECCSSCCC--CCC------TTTTTTCTTCCEEECTTSC
T ss_pred cCCccc-----ccCcccccCCCCCEEECCCCcCC--ccC------HHHHhCCCCCCEEEeeCCC
Confidence 666533 22344566666666666665311 111 1234455666666666653
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.30 E-value=6.2e-12 Score=133.94 Aligned_cols=134 Identities=13% Similarity=-0.008 Sum_probs=111.1
Q ss_pred CCcccceeEEcccCcchhhh-hhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccce
Q 035550 1136 LPSSLKSLVVWSCSKLESIA-ERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQE 1214 (1385)
Q Consensus 1136 ~~~~L~~L~L~~~~~~~~~~-~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~ 1214 (1385)
+|+.+++|++++|.+.+..+ ..|..+++|++|+|++|.+.+..+..+..+++|++|+|++|.+.+..+..|..+++|++
T Consensus 30 ~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 109 (220)
T 2v70_A 30 IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKT 109 (220)
T ss_dssp CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCE
T ss_pred CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCE
Confidence 44678899999998877654 45788999999999999966655667888999999999999987777777899999999
Q ss_pred eeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccC
Q 035550 1215 LTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCD 1273 (1385)
Q Consensus 1215 L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1273 (1385)
|++++|.+.+..|..+..+++|++|+|++|.+... .+..+..+++|+.|++++|.
T Consensus 110 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV----APGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB----CTTTTTTCTTCCEEECCSCC
T ss_pred EECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE----CHHHhcCCCCCCEEEecCcC
Confidence 99999998888888888999999999999975432 23567888999999999864
No 121
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.29 E-value=6.5e-12 Score=154.13 Aligned_cols=170 Identities=15% Similarity=0.143 Sum_probs=99.4
Q ss_pred ccccEEEeccCCCCCcCcccccCCCCccEEEeccCCCcccccCccCccccceEEeecCCCCCCCCcccccCCCCCcceEE
Q 035550 972 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKVKIRECDALKSLPEAWRCDTNSSLEILN 1051 (1385)
Q Consensus 972 ~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 1051 (1385)
++|+.|++++|.. ..++ .+..+++|+.|+|++| .+..++.+..+++|+.|++++|. +..+|. ...+++|+.|+
T Consensus 43 ~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~---l~~l~~L~~L~ 115 (605)
T 1m9s_A 43 NSIDQIIANNSDI-KSVQ-GIQYLPNVTKLFLNGN-KLTDIKPLTNLKNLGWLFLDENK-IKDLSS---LKDLKKLKSLS 115 (605)
T ss_dssp TTCCCCBCTTCCC-CCCT-TGGGCTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSSC-CCCCTT---STTCTTCCEEE
T ss_pred CCCCEEECcCCCC-CCCh-HHccCCCCCEEEeeCC-CCCCChhhccCCCCCEEECcCCC-CCCChh---hccCCCCCEEE
Confidence 5788888887764 3444 4677888888888887 45555556677777777777776 444442 24455667777
Q ss_pred eecCCCCccccccCCCCCcceEEeccCCCCcccccccccccccccccccCCCccEEEeccCCCcccccccCCCchhhhcc
Q 035550 1052 IEDCHSLTYIAAVQLPPSLKQLEIYNCDNIRTLTVEEGIQCSSSSRRYTSSLLEELHISSCQSLTCIFSKNELPATLESL 1131 (1385)
Q Consensus 1052 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~l 1131 (1385)
+++|... .++.+..+++|+.|++++|. +..+ ..+.
T Consensus 116 Ls~N~l~-~l~~l~~l~~L~~L~Ls~N~-l~~l-----------------------------------------~~l~-- 150 (605)
T 1m9s_A 116 LEHNGIS-DINGLVHLPQLESLYLGNNK-ITDI-----------------------------------------TVLS-- 150 (605)
T ss_dssp CTTSCCC-CCGGGGGCTTCSEEECCSSC-CCCC-----------------------------------------GGGG--
T ss_pred ecCCCCC-CCccccCCCccCEEECCCCc-cCCc-----------------------------------------hhhc--
Confidence 6666532 23334444455555555442 1111 0001
Q ss_pred ccCCCCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCccc
Q 035550 1132 EVGNLPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEA 1201 (1385)
Q Consensus 1132 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~ 1201 (1385)
.+ ++|+.|+|++|.+.+..| +..+++|+.|+|++|.+. .++ .+..+++|+.|+|++|++.+.
T Consensus 151 ---~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 151 ---RL-TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp ---SC-TTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEECCSEEEECC
T ss_pred ---cc-CCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEccCCcCcCC
Confidence 11 466666666666655544 666667777777776633 333 355666677777776665443
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.29 E-value=1.4e-11 Score=131.11 Aligned_cols=111 Identities=11% Similarity=-0.023 Sum_probs=89.8
Q ss_pred cccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeec
Q 035550 1138 SSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTI 1217 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L 1217 (1385)
++|++|++++|.+.+..+..|.++++|++|+|++|.+.+..+..+..+++|++|+|++|.+.+..|..|..+++|+.|+|
T Consensus 57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 136 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL 136 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence 46777777777777666767888888888888888866555556778888888888888877777888888888899999
Q ss_pred cccCCCCCCcccCCCCCCcceeEecCCcchh
Q 035550 1218 GIGGALPSLEEEDGLPTNLQSLNIWGNMEIW 1248 (1385)
Q Consensus 1218 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~ 1248 (1385)
++|.+.+..|..+..+++|++|++++|+...
T Consensus 137 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 137 YDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 8888877778888888889999999888553
No 123
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.28 E-value=3.1e-11 Score=127.78 Aligned_cols=124 Identities=16% Similarity=-0.010 Sum_probs=97.2
Q ss_pred cccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeec
Q 035550 1138 SSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTI 1217 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L 1217 (1385)
++|++|++++|.+.+..+..|.++++|++|+|++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 131 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEEC
Confidence 57888888888777666666788899999999999855444445678889999999999876666666788999999999
Q ss_pred cccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEeccc
Q 035550 1218 GIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGC 1272 (1385)
Q Consensus 1218 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 1272 (1385)
++|.+.+..+..+..+++|++|++++|+. ...+++|+.|+++.|
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~-----------~~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 132 YQNQLKSVPDGVFDRLTSLQYIWLHDNPW-----------DCTCPGIRYLSEWIN 175 (208)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSCCB-----------CCCTTTTHHHHHHHH
T ss_pred CCCccceeCHHHhccCCCccEEEecCCCe-----------ecCCCCHHHHHHHHH
Confidence 99887766665678889999999999863 245677888888874
No 124
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.27 E-value=1.2e-10 Score=137.24 Aligned_cols=296 Identities=12% Similarity=0.030 Sum_probs=180.8
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccc-CCcEEEEEeCCCCCHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDH-FDLKAWTCVSDDFDVIRLTKSI 195 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i 195 (1385)
..++||+++++++..++........+..+.+.|+|++|+||||+|+.+++. .... -..++|+.++...+...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 569999999999999986521101122348999999999999999999873 3222 1346778887878888999999
Q ss_pred HHHhcCCCCCCccCHHHHHHHHHhHcC--CCeEEEEEecCCCCCccccccccCcccCC-C---CCcEEEEEccchhHhhh
Q 035550 196 LLSIASDQIVDNHDLNKLQEELKKKLS--PKKFLLVLDDVWNENYNDWDRLRPPFEAG-A---PGSKIIVTARNQGVAAI 269 (1385)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~l~~~l~~~-~---~gs~ilvTtR~~~v~~~ 269 (1385)
+..++............+.+.+.+.+. +++.+||+||++.-+......+...+... . .+..||++|+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 988865433223345556666665553 66899999999654434444444333221 1 46678888877644332
Q ss_pred hC-------CCCcccCCCCChhhhHHHhhhhccCcC-CCCCchhHHHHHHHHHHhc---------CCCchHHHHHhhh-h
Q 035550 270 MG-------TAPAYQLKKLSNDDCLSVFAQHSLGTR-DFSSNKSLEEIGKKIVIKC---------NGLPLAAKTLGGL-L 331 (1385)
Q Consensus 270 ~~-------~~~~~~l~~L~~~~~~~lf~~~a~~~~-~~~~~~~~~~~~~~i~~~~---------~g~PLai~~~~~~-l 331 (1385)
+. ....+++.+++.++..+++...+.... ..... .+....|++.+ +|.|-.+..+... .
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 21 123689999999999999987753211 00111 24566788888 7887544433222 1
Q ss_pred c-----CC--CCHHHHHHHHhhhhhhhccccccchHHHHHhhhcCChhhhhhhhhhcccC---CCcccChHHHHHHHHH-
Q 035550 332 R-----GK--DDRREWEDVLSSKIWELQEERCDIIPALRVSYYYLSAPLKQCFAYCSLFP---KDYEFEEEEIILLWCA- 400 (1385)
Q Consensus 332 ~-----~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp---~~~~~~~~~li~~w~a- 400 (1385)
. +. -+.+....+..... ...+.-.+..|+.+.+.++..++.+. .+-.+....+...+..
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~ 321 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIV 321 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH
Confidence 1 11 12233333322110 11123346788888888887777554 2224555565554432
Q ss_pred ---cCCCccCCCCCcHHHHHHHHHHHHHHcCCcccc
Q 035550 401 ---SGFLGHKESGNPIEDLGRKFFQELRSRSFFQQS 433 (1385)
Q Consensus 401 ---~g~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~ 433 (1385)
.|.. .........++++|..++++...
T Consensus 322 ~~~~~~~------~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 322 CEEYGER------PRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHTTCC------CCCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHcCCC------CCCHHHHHHHHHHHHhCCCeEEe
Confidence 2211 11134467889999999999874
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.27 E-value=6.9e-12 Score=145.32 Aligned_cols=125 Identities=12% Similarity=0.015 Sum_probs=92.6
Q ss_pred ceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCC-CccCcceEEeccccCcccccccCCCCCccceeeccc
Q 035550 1141 KSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGL-PCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGI 1219 (1385)
Q Consensus 1141 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~-~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~ 1219 (1385)
+.++++++.+ ..+|..+ .+.++.|+|++|.+.+..+..+. .+++|++|+|++|.+.+..+..|.++++|+.|+|++
T Consensus 21 ~~l~c~~~~l-~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQL-PNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCC-SSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCc-CccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 4667766644 3455544 24688999999985555555565 788999999999987776667788999999999999
Q ss_pred cCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEeccc
Q 035550 1220 GGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGC 1272 (1385)
Q Consensus 1220 n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 1272 (1385)
|.+....+..+..+++|++|+|++|.+... .+..|..+++|+.|+|++|
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~----~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVV----DRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSS
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEE----CHHHhCCcccCCEEECCCC
Confidence 887666666778888888888888874422 2356777788888888875
No 126
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.27 E-value=4.2e-12 Score=139.43 Aligned_cols=171 Identities=15% Similarity=0.110 Sum_probs=121.5
Q ss_pred cccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeec
Q 035550 1138 SSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTI 1217 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L 1217 (1385)
..+..++++++.+.+.. .+..+++|++|++++|. ++.++ .+..+++|++|++++|.+.+. |. +..+++|+.|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEEC
Confidence 35666777776654433 35667888888888887 55566 577788888888888875544 33 888888888888
Q ss_pred cccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCCCCcccc
Q 035550 1218 GIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLPASLT 1297 (1385)
Q Consensus 1218 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~ 1297 (1385)
++|.+.. +|. +.. ++|++|++++|.+... ..+..+++|+.|++++|... .+ ..+..+++|+
T Consensus 93 ~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~------~~l~~l~~L~~L~Ls~N~i~--~~--------~~l~~l~~L~ 153 (263)
T 1xeu_A 93 NRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT------DSLIHLKNLEILSIRNNKLK--SI--------VMLGFLSKLE 153 (263)
T ss_dssp CSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS------GGGTTCTTCCEEECTTSCCC--BC--------GGGGGCTTCC
T ss_pred CCCccCC-cCc-ccc-CcccEEEccCCccCCC------hhhcCcccccEEECCCCcCC--CC--------hHHccCCCCC
Confidence 8887554 442 223 8888888888875432 24778888888888887421 11 1234567888
Q ss_pred eeecccccccccccccCCCCCCCCeEeccCCCCCCCCCC
Q 035550 1298 SLWIFNFPNLERLSSSIVDLQNLTELKLHNCPKLKYFPE 1336 (1385)
Q Consensus 1298 ~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 1336 (1385)
.|++++| .++.+ ..+..+++|+.|++++|+ +...|.
T Consensus 154 ~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~N~-~~~~~~ 189 (263)
T 1xeu_A 154 VLDLHGN-EITNT-GGLTRLKKVNWIDLTGQK-CVNEPV 189 (263)
T ss_dssp EEECTTS-CCCBC-TTSTTCCCCCEEEEEEEE-EECCCE
T ss_pred EEECCCC-cCcch-HHhccCCCCCEEeCCCCc-ccCCcc
Confidence 8888886 66666 578899999999999975 665553
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.25 E-value=6.4e-12 Score=127.85 Aligned_cols=136 Identities=19% Similarity=0.149 Sum_probs=102.5
Q ss_pred CCCcccceeEEcccCcc-hhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccc
Q 035550 1135 NLPSSLKSLVVWSCSKL-ESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQ 1213 (1385)
Q Consensus 1135 ~~~~~L~~L~L~~~~~~-~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~ 1213 (1385)
..|++|++|++++|.+. +.+|..+..+++|++|++++|.+. .+ ..+..+++|++|++++|.+.+.+|..+..+++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 45578999999999877 577877888999999999999844 44 6777888999999999987777777777789999
Q ss_pred eeeccccCCCCCC-cccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccC
Q 035550 1214 ELTIGIGGALPSL-EEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCD 1273 (1385)
Q Consensus 1214 ~L~L~~n~~~~~~-~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1273 (1385)
.|++++|.+.... +..+..+++|++|++++|++..... .....+..+++|++|++++|.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND-YRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT-HHHHHHTTCSSCCEETTEETT
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH-HHHHHHHhCccCcEecCCCCC
Confidence 9999988765432 2577788889999998887442211 000246677888888888763
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.23 E-value=4.5e-14 Score=172.32 Aligned_cols=124 Identities=17% Similarity=0.089 Sum_probs=83.1
Q ss_pred ccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeecc
Q 035550 1139 SLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIG 1218 (1385)
Q Consensus 1139 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~ 1218 (1385)
.|+.|++++|.+.+ +|. +.++++|+.|+|++|.+ ..+|..+..+++|++|+|++|.+.+ +| .+..+++|+.|+|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCcccc-cccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 46777777776554 555 77777888888888774 4677777777788888888877554 66 67778888888888
Q ss_pred ccCCCCCC-cccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEE
Q 035550 1219 IGGALPSL-EEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLL 1268 (1385)
Q Consensus 1219 ~n~~~~~~-~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~ 1268 (1385)
+|.+.+.. |..++.+++|+.|+|++|++..... .....+..+++|+.|+
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG-IQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS-CTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc-HHHHHHHHCcccCccC
Confidence 77766665 7777777788888887776432211 0001123356666664
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.23 E-value=1.4e-11 Score=125.24 Aligned_cols=139 Identities=19% Similarity=0.217 Sum_probs=104.8
Q ss_pred CCCCCCcEEeecCCCCc-cccCCCCCCccCcceEEeccccCcccccccCCCCCccceeeccccCCCCCCcccCCCCCCcc
Q 035550 1159 DNNTSLETISIDSCGNL-VSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIGGALPSLEEEDGLPTNLQ 1237 (1385)
Q Consensus 1159 ~~l~~L~~L~L~~n~~l-~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~ 1237 (1385)
...++|++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 34588999999999965 57888888899999999999985554 6788999999999999998777776666788889
Q ss_pred eeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCCCCcccceeecccccccccccc----c
Q 035550 1238 SLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLPASLTSLWIFNFPNLERLSS----S 1313 (1385)
Q Consensus 1238 ~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~----~ 1313 (1385)
+|++++|.+..... ...+..+++|+.|++++| .++.+|. .
T Consensus 99 ~L~Ls~N~l~~~~~---~~~l~~l~~L~~L~l~~N---------------------------------~l~~~~~~~~~~ 142 (168)
T 2ell_A 99 HLNLSGNKLKDIST---LEPLKKLECLKSLDLFNC---------------------------------EVTNLNDYRESV 142 (168)
T ss_dssp EEECBSSSCCSSGG---GGGGSSCSCCCEEECCSS---------------------------------GGGTSTTHHHHH
T ss_pred EEeccCCccCcchh---HHHHhcCCCCCEEEeeCC---------------------------------cCcchHHHHHHH
Confidence 99988887443211 134566777777777775 3444443 5
Q ss_pred CCCCCCCCeEeccCCCCCCCCCC
Q 035550 1314 IVDLQNLTELKLHNCPKLKYFPE 1336 (1385)
Q Consensus 1314 ~~~l~~L~~L~l~~c~~l~~l~~ 1336 (1385)
+..+++|++|++++|. ++++|.
T Consensus 143 ~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 143 FKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp HTTCSSCCEETTEETT-SCBCCS
T ss_pred HHhCccCcEecCCCCC-hhhccc
Confidence 6778888888888874 666654
No 130
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.23 E-value=8.4e-11 Score=138.52 Aligned_cols=294 Identities=12% Similarity=0.040 Sum_probs=172.5
Q ss_pred CCeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccc---CCcEEEEEeCCCCCHHHHH
Q 035550 116 EAKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDH---FDLKAWTCVSDDFDVIRLT 192 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~---f~~~~wv~~~~~~~~~~~~ 192 (1385)
+..|+||+++++++.+++..... ....+.+.|+|++|+||||||+.+++. .... -..++|+.+....+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHH
Confidence 36799999999999998864211 123468899999999999999999973 3332 2346788877666777888
Q ss_pred HHHHHHhcCCCCCCccCHHHHHHHHHhHcC--CCeEEEEEecCCCCC----ccccccccCcccC-CCCCcEEEEEccchh
Q 035550 193 KSILLSIASDQIVDNHDLNKLQEELKKKLS--PKKFLLVLDDVWNEN----YNDWDRLRPPFEA-GAPGSKIIVTARNQG 265 (1385)
Q Consensus 193 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~ilvTtR~~~ 265 (1385)
..++.+++........+..++.+.+.+.+. +++.+||+|+++.-. ...+..+...+.. ...+..+|+||+...
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 888877754332222345555555655553 458999999994321 1122222222211 233566788887664
Q ss_pred HhhhhC-------CCCcccCCCCChhhhHHHhhhhccCcC-CCCCchhHHHHHHHHHHhcC---CCchHH-HHHhhhhc-
Q 035550 266 VAAIMG-------TAPAYQLKKLSNDDCLSVFAQHSLGTR-DFSSNKSLEEIGKKIVIKCN---GLPLAA-KTLGGLLR- 332 (1385)
Q Consensus 266 v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~a~~~~-~~~~~~~~~~~~~~i~~~~~---g~PLai-~~~~~~l~- 332 (1385)
....+. ....+++++++.++..+++...+.... ..... .++.+.+++.++ |.|..+ .++.....
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 332221 114789999999999999987642111 11112 244556777777 999844 33322221
Q ss_pred ----C--CCCHHHHHHHHhhhhhhhccccccchHHHHHhhhcCChhhhhhhhhhcccCC-C-cccChHHHHHHH--HH--
Q 035550 333 ----G--KDDRREWEDVLSSKIWELQEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPK-D-YEFEEEEIILLW--CA-- 400 (1385)
Q Consensus 333 ----~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~-~-~~~~~~~li~~w--~a-- 400 (1385)
+ .-+.+.+..+++... ...+.-.+..+|+..+..+..++...+ + ..+...++.... ++
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~ 321 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKK 321 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHH
T ss_pred HHhcCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHh
Confidence 1 123455555544321 124566678899888887777764322 2 123333332221 11
Q ss_pred cCCCccCCCCCcHHHHHHHHHHHHHHcCCccc
Q 035550 401 SGFLGHKESGNPIEDLGRKFFQELRSRSFFQQ 432 (1385)
Q Consensus 401 ~g~~~~~~~~~~~~~~~~~~~~~L~~~sll~~ 432 (1385)
.|. . .........+++.|...++++.
T Consensus 322 ~g~-~-----~~~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 322 LGV-E-----AVTQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp HTC-C-----CCCHHHHHHHHHHHHHHTSEEE
T ss_pred cCC-C-----CCCHHHHHHHHHHHHhCCCEEE
Confidence 121 1 1112446778999999999976
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.22 E-value=6.1e-12 Score=125.03 Aligned_cols=132 Identities=20% Similarity=0.103 Sum_probs=98.0
Q ss_pred CCcccceeEEcccCcc-hhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccce
Q 035550 1136 LPSSLKSLVVWSCSKL-ESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQE 1214 (1385)
Q Consensus 1136 ~~~~L~~L~L~~~~~~-~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~ 1214 (1385)
.+++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+.+.+|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3478999999999877 6778878889999999999987444 4 66778889999999999877777777777888999
Q ss_pred eeccccCCCCC-CcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEec
Q 035550 1215 LTIGIGGALPS-LEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLIS 1270 (1385)
Q Consensus 1215 L~L~~n~~~~~-~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~ 1270 (1385)
|++++|.+.+. .+..++.+++|++|++++|++..... .....+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND-YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT-HHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH-HHHHHHHHCCCcccccCC
Confidence 99988886553 23567778888888888887432211 000245667777777765
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.16 E-value=3e-11 Score=119.96 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=84.4
Q ss_pred CCCCCcEEeecCCCCc-cccCCCCCCccCcceEEeccccCcccccccCCCCCccceeeccccCCCCCCcccCCCCCCcce
Q 035550 1160 NNTSLETISIDSCGNL-VSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIGGALPSLEEEDGLPTNLQS 1238 (1385)
Q Consensus 1160 ~l~~L~~L~L~~n~~l-~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~ 1238 (1385)
..++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3578999999999866 57888888899999999999986554 67888999999999999887777776667888888
Q ss_pred eEecCCcchhhhhhhcCccCCCCCccceEEeccc
Q 035550 1239 LNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGC 1272 (1385)
Q Consensus 1239 L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 1272 (1385)
|++++|.+..... +..+..+++|++|++++|
T Consensus 93 L~ls~N~i~~~~~---~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 93 LNLSGNKIKDLST---IEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp EECTTSCCCSHHH---HGGGGGCTTCCEEECTTC
T ss_pred EECCCCcCCChHH---HHHHhhCCCCCEEeCcCC
Confidence 8888887543211 134667777777777775
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.12 E-value=2.1e-12 Score=157.67 Aligned_cols=175 Identities=13% Similarity=0.061 Sum_probs=109.8
Q ss_pred cccCCceeEEEEcCcccccccccccCCccccEEeccccc--------------ccccchhhhccCCccEEe-cCCCcchh
Q 035550 526 LFKLQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTE--------------IRTLPESVNKLYNLHTLL-LEGCRRLK 590 (1385)
Q Consensus 526 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~--------------i~~lP~~i~~L~~L~~L~-L~~~~~l~ 590 (1385)
+...++|+.|+|++|.++.+|+.|++|.+|+.|++++|. ...+|..++.|.+|+.|+ ++.| .+.
T Consensus 345 ~~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~ 423 (567)
T 1dce_A 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLD 423 (567)
T ss_dssp CSTTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHH
T ss_pred cccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccc
Confidence 355778888888888888888888888888888887663 224556677777777777 4443 333
Q ss_pred hhhh------cccc--cCCCCeeecCCCCCcccccCCCCcccccccccceEecCCCCcChhhhcccccccceeEEeccCC
Q 035550 591 KLCA------DMGN--LIKLHHLDNLDTGSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGIRELKLLTHLRGTLNISKLEN 662 (1385)
Q Consensus 591 ~lp~------~i~~--L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~ 662 (1385)
.++. .+.. ...|++|++++| .+..+|. ++.+++|+.|
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L--------------------------------- 468 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHL--------------------------------- 468 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEE---------------------------------
T ss_pred hhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEe---------------------------------
Confidence 3322 1111 124777777777 5666664 5555555555
Q ss_pred CCCcchhHHhhcCCCCCCceEEEEEccCCCCCCchhhhhHHhhcccCCCCCCccceEEeccCCCCCCcccCCCCcccccE
Q 035550 663 VKDIGDAKEAQLDGKKNLKVLKFQWTQSTNDLSSREAETEKDVLVMLKPHENLEQFCISGYEGKEFPTWLGDSSFSNLAT 742 (1385)
Q Consensus 663 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~ 742 (1385)
++++|.+... ...+..+++|+.|++++|....+| .+. .+++|+.
T Consensus 469 ---------------------~Ls~N~l~~l------------p~~~~~l~~L~~L~Ls~N~l~~lp-~l~--~l~~L~~ 512 (567)
T 1dce_A 469 ---------------------DLSHNRLRAL------------PPALAALRCLEVLQASDNALENVD-GVA--NLPRLQE 512 (567)
T ss_dssp ---------------------ECCSSCCCCC------------CGGGGGCTTCCEEECCSSCCCCCG-GGT--TCSSCCE
T ss_pred ---------------------ecCccccccc------------chhhhcCCCCCEEECCCCCCCCCc-ccC--CCCCCcE
Confidence 3333333211 112444566666777777666666 443 3777777
Q ss_pred EEeeCCCCCCCC-C-CCCCCCCCCeEEEcCCc
Q 035550 743 LKFEDCGVCTTL-P-SVGQLPSLKHLEVRGMR 772 (1385)
Q Consensus 743 L~L~~~~~~~~l-~-~l~~l~~L~~L~L~~~~ 772 (1385)
|+|++|.+.... | .++.+++|+.|+|++|.
T Consensus 513 L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp EECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred EECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 777777776653 4 67777788888887765
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.11 E-value=1.4e-10 Score=120.50 Aligned_cols=112 Identities=14% Similarity=0.007 Sum_probs=93.4
Q ss_pred CCcccceeEEcccCcchhhhh-hcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccce
Q 035550 1136 LPSSLKSLVVWSCSKLESIAE-RLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQE 1214 (1385)
Q Consensus 1136 ~~~~L~~L~L~~~~~~~~~~~-~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~ 1214 (1385)
++.+|++|++++|.+.+..+. .+..+++|++|+|++|.+.+..|..+..+++|++|+|++|.+.+..|..|.++++|++
T Consensus 27 ~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 106 (192)
T 1w8a_A 27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT 106 (192)
T ss_dssp CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCE
T ss_pred CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 345888999999877666554 4788899999999999877777888888899999999999887777777888999999
Q ss_pred eeccccCCCCCCcccCCCCCCcceeEecCCcch
Q 035550 1215 LTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEI 1247 (1385)
Q Consensus 1215 L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~ 1247 (1385)
|++++|.+.+..|..+..+++|++|++++|+..
T Consensus 107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 107 LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp EECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred EECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999999888888888888889999999998754
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.09 E-value=2.6e-10 Score=118.33 Aligned_cols=112 Identities=16% Similarity=0.064 Sum_probs=93.2
Q ss_pred CCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCcccee
Q 035550 1136 LPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQEL 1215 (1385)
Q Consensus 1136 ~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L 1215 (1385)
+|++|++|++++|.+. .+|..|.++++|++|+|++|.+.+..+..+..+++|++|+|++|.+.+..|..|..+++|+.|
T Consensus 29 ~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 29 IPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp CCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEE
Confidence 4568999999998765 566788899999999999999666666678889999999999999777777788999999999
Q ss_pred eccccCCCCCCcccCCCCCCcceeEecCCcchh
Q 035550 1216 TIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIW 1248 (1385)
Q Consensus 1216 ~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~ 1248 (1385)
+|++|.+....+..+..+++|+.|++++|+...
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 108 SLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 999998776666567888999999999988543
No 136
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.09 E-value=3.1e-10 Score=124.36 Aligned_cols=199 Identities=14% Similarity=0.119 Sum_probs=117.7
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.+++||++.++.+..++.... ..+++.|+|++|+||||+|+.+++... ..+.... ..+. .... ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~--~~~~~~~-~~~~---~~~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLN--CETGITA-TPCG---VCDN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHH--CTTCSCS-SCCS---CSHH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhc--CCCCCCC-CCCc---ccHH-HHHHh
Confidence 358999999999999996542 134788999999999999999987321 1111000 0000 0000 00110
Q ss_pred HHhcCC----CCCCccCHHHHHHHHHhH----cCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchhH-h
Q 035550 197 LSIASD----QIVDNHDLNKLQEELKKK----LSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQGV-A 267 (1385)
Q Consensus 197 ~~~~~~----~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~ 267 (1385)
...... ........+.+...+... ..+++.+||+||++.-+...++.+...+.....+.++|+||+.... .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 000000 000111122222222221 2356899999999665545566666656555567888888876532 1
Q ss_pred hh-hCCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHHhhhh
Q 035550 268 AI-MGTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLL 331 (1385)
Q Consensus 268 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 331 (1385)
.. ......+++++++.++..+++...+...... .. .+....|++.|+|.|..+..+...+
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~-~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA-HE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC-BC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC-CC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 1223578999999999999998876432211 11 2456779999999999988765443
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.08 E-value=2.2e-10 Score=118.95 Aligned_cols=127 Identities=13% Similarity=0.025 Sum_probs=104.6
Q ss_pred cceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCC-CCCCccCcceEEeccccCcccccccCCCCCccceeecc
Q 035550 1140 LKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPE-GGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIG 1218 (1385)
Q Consensus 1140 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~-~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~ 1218 (1385)
-+.++++++.+ +.+|..+. .+|++|++++|.+.+..+. .+..+++|++|+|++|.+.+..|..|.++++|++|+|+
T Consensus 10 ~~~l~~s~~~l-~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGL-KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCC-SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCc-CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 36788888865 55666553 3899999999985444443 37789999999999999888889999999999999999
Q ss_pred ccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccC
Q 035550 1219 IGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCD 1273 (1385)
Q Consensus 1219 ~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1273 (1385)
+|.+.+..+..+..+++|++|+|++|++... .+..+..+++|++|++++|.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCV----MPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEE----CTTSSTTCTTCCEEECTTCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCee----CHHHhhcCCCCCEEEeCCCC
Confidence 9998888887888999999999999985432 34678899999999999974
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.08 E-value=5.8e-10 Score=127.38 Aligned_cols=125 Identities=10% Similarity=-0.111 Sum_probs=84.8
Q ss_pred cccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccc-eee
Q 035550 1138 SSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQ-ELT 1216 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~-~L~ 1216 (1385)
.++..+.+.++-...........+++|+.|+|++|.+...-+..|..+.+|++|+|.+| +...-+..|.+|++|+ .++
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~ 280 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLE 280 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEE
Confidence 56777777766433333332334788999999988844333446778889999999887 3444445788899998 898
Q ss_pred ccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEE
Q 035550 1217 IGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLL 1268 (1385)
Q Consensus 1217 L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~ 1268 (1385)
+.+ .+...-+..|..+++|+.|++++|..... ....|.++++|+.++
T Consensus 281 l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I----~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 281 LPA-SVTAIEFGAFMGCDNLRYVLATGDKITTL----GDELFGNGVPSKLIY 327 (329)
T ss_dssp ECT-TCCEECTTTTTTCTTEEEEEECSSCCCEE----CTTTTCTTCCCCEEE
T ss_pred Ecc-cceEEchhhhhCCccCCEEEeCCCccCcc----chhhhcCCcchhhhc
Confidence 886 44444456777888888888877763322 225677788887765
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.06 E-value=3.9e-11 Score=151.54 Aligned_cols=81 Identities=28% Similarity=0.289 Sum_probs=46.6
Q ss_pred CcccccccccccCCccccEEecccccccccchhhhccCCccEEecCCCcchhhhhhcccccCCCCeeecCCCCCcccccC
Q 035550 539 GYYISELPDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLDNLDTGSLEEMPL 618 (1385)
Q Consensus 539 ~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~ 618 (1385)
.|.+...|+.|..+.+|++|+|++|.+..+|..+.+|.+|++|+|++| .+..+|..|++|++|++|+|++| .+..+|.
T Consensus 210 ~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~ 287 (727)
T 4b8c_D 210 ENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLPA 287 (727)
T ss_dssp ------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCCS
T ss_pred ccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccCh
Confidence 334444456667777777777777777777766777777777777775 44566766777777777777776 3445554
Q ss_pred CCC
Q 035550 619 GIG 621 (1385)
Q Consensus 619 ~i~ 621 (1385)
.++
T Consensus 288 ~~~ 290 (727)
T 4b8c_D 288 ELG 290 (727)
T ss_dssp SGG
T ss_pred hhc
Confidence 443
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.03 E-value=7.3e-10 Score=113.59 Aligned_cols=112 Identities=20% Similarity=0.026 Sum_probs=84.9
Q ss_pred CCcccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCcccee
Q 035550 1136 LPSSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQEL 1215 (1385)
Q Consensus 1136 ~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L 1215 (1385)
++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEE
Confidence 34688888888888776666677888888888888888554444456778888888888888666655667888888888
Q ss_pred eccccCCCCCCcccCCCCCCcceeEecCCcch
Q 035550 1216 TIGIGGALPSLEEEDGLPTNLQSLNIWGNMEI 1247 (1385)
Q Consensus 1216 ~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~ 1247 (1385)
++++|.+.+..+..+..+++|++|++++|+..
T Consensus 106 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 106 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 88888766555545677888888888888744
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.01 E-value=5.8e-10 Score=115.66 Aligned_cols=125 Identities=14% Similarity=0.100 Sum_probs=102.5
Q ss_pred ceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeecccc
Q 035550 1141 KSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIG 1220 (1385)
Q Consensus 1141 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n 1220 (1385)
+.++++++.+. .+|..+ .++|++|+|++|. +..+|..+..+++|++|+|++|.+.+..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 56777777544 455544 3689999999998 5578888889999999999999988777788999999999999999
Q ss_pred CCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccC
Q 035550 1221 GALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCD 1273 (1385)
Q Consensus 1221 ~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1273 (1385)
.+....+..+..+++|++|+|++|.+... .+..+..+++|+.|++++|.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVV----PEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBC----CTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCee----ChhhhhcCccccEEEeCCCC
Confidence 98888887889999999999999985422 22457889999999999863
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.00 E-value=2.3e-10 Score=117.10 Aligned_cols=131 Identities=15% Similarity=0.024 Sum_probs=92.9
Q ss_pred cccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeec
Q 035550 1138 SSLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTI 1217 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L 1217 (1385)
++|++|++++|.+.. +|......++|+.|++++|.+.+ + ..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 19 ~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 578888888887664 45433334489999999988544 4 56778889999999999865443344478899999999
Q ss_pred cccCCCCCCcc--cCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccC
Q 035550 1218 GIGGALPSLEE--EDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCD 1273 (1385)
Q Consensus 1218 ~~n~~~~~~~~--~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1273 (1385)
++|.+ +.+|. .+..+++|++|++++|++...... ....+..+++|+.|++++|.
T Consensus 96 ~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~-~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 96 TNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHY-RLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTH-HHHHHHHCTTCSEETTEECC
T ss_pred CCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhH-HHHHHHHCCccceeCCCcCC
Confidence 98875 55665 677788899999999875422110 00136778888888888864
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.99 E-value=5.3e-10 Score=114.42 Aligned_cols=125 Identities=21% Similarity=0.173 Sum_probs=95.8
Q ss_pred ccCCCceeEecccccccCCCCCcccccccccccCC-ceeEEEEcCcccccccccccCCccccEEecccccccccchhh-h
Q 035550 496 LHDINHLRTFLPVTLSKSSCGHLARSILPKLFKLQ-RLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLPESV-N 573 (1385)
Q Consensus 496 ~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i-~ 573 (1385)
+..+..++.|.+.+.. +. .+ +.+..+. +|++|++++|.|+.+ ..|+.+.+|++|+|++|.|+.+|+.+ +
T Consensus 15 ~~~~~~L~~L~l~~n~------l~-~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYK------IP-VI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp EECTTSCEEEECTTSC------CC-SC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred cCCcCCceEEEeeCCC------Cc-hh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhh
Confidence 3345566666554332 22 22 3454444 899999999999988 67889999999999999999888655 8
Q ss_pred ccCCccEEecCCCcchhhhhh--cccccCCCCeeecCCCCCcccccCC----CCcccccccccc
Q 035550 574 KLYNLHTLLLEGCRRLKKLCA--DMGNLIKLHHLDNLDTGSLEEMPLG----IGKLTCLQTLCN 631 (1385)
Q Consensus 574 ~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~lp~~----i~~L~~L~~L~~ 631 (1385)
.+++|++|++++| .+..+|. .++.+++|++|++++| .+..+|.. ++.+++|+.|..
T Consensus 86 ~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 86 ALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp HCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETT
T ss_pred cCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCC
Confidence 9999999999997 5677887 7889999999999999 67777764 777788877743
No 144
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.97 E-value=4.3e-10 Score=141.97 Aligned_cols=105 Identities=25% Similarity=0.335 Sum_probs=94.9
Q ss_pred ccccccCCceeEEEEcCcccccccccccCCccccEEecccccccccchhhhccCCccEEecCCCcchhhhhhcccccCCC
Q 035550 523 LPKLFKLQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKL 602 (1385)
Q Consensus 523 ~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 602 (1385)
+..+..+..|++|+|++|.+..+|..+.++.+|++|+|++|.|+.+|.+|++|++|++|+|++| .+..+|..|++|++|
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQL 295 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTC
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCC
Confidence 4556889999999999999999999899999999999999999999999999999999999998 566899999999999
Q ss_pred CeeecCCCCCcccccCCCCcccccccc
Q 035550 603 HHLDNLDTGSLEEMPLGIGKLTCLQTL 629 (1385)
Q Consensus 603 ~~L~l~~~~~~~~lp~~i~~L~~L~~L 629 (1385)
++|++++| .+..+|..|++|++|++|
T Consensus 296 ~~L~L~~N-~l~~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 296 KYFYFFDN-MVTTLPWEFGNLCNLQFL 321 (727)
T ss_dssp SEEECCSS-CCCCCCSSTTSCTTCCCE
T ss_pred CEEECCCC-CCCccChhhhcCCCccEE
Confidence 99999999 788999999999999988
No 145
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.96 E-value=2.4e-09 Score=115.02 Aligned_cols=184 Identities=14% Similarity=0.087 Sum_probs=113.9
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccC-CcEEEEEeCCCCCHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF-DLKAWTCVSDDFDVIRLTKSI 195 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i 195 (1385)
.+++||++.++++.+++.... .+.+.|+|++|+|||++|+.+++... ...+ ...+.+..+.......+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHH
Confidence 458999999999999996542 23488999999999999999987321 1112 123344444333332222211
Q ss_pred HHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchhH-hhh-hCCC
Q 035550 196 LLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQGV-AAI-MGTA 273 (1385)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~~~-~~~~ 273 (1385)
........ .-.+++.+||+||++.-....++.+...+.....+.++|+||+.... ... ....
T Consensus 90 -~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~ 153 (226)
T 2chg_A 90 -KEFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (226)
T ss_dssp -HHHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred -HHHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC
Confidence 11111000 01357889999999665444455555555555567788888876532 111 1223
Q ss_pred CcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHH
Q 035550 274 PAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 327 (1385)
Q Consensus 274 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 327 (1385)
..+++.+++.++..+++.+.+........ .+....|++.++|.|..+..+
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 47899999999999999887642221111 245667889999999865544
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.95 E-value=2.6e-09 Score=109.40 Aligned_cols=128 Identities=15% Similarity=-0.015 Sum_probs=99.2
Q ss_pred ccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeecc
Q 035550 1139 SLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIG 1218 (1385)
Q Consensus 1139 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~ 1218 (1385)
+.+.++++++.+. .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 3567777777544 344433 4789999999999655445567889999999999998766656668899999999999
Q ss_pred ccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccC
Q 035550 1219 IGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCD 1273 (1385)
Q Consensus 1219 ~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1273 (1385)
+|.+.+..+..+..+++|++|++++|.+... .+..+..+++|++|++++|.
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSV----PDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEe----CHHHhcCCcccCEEEecCCC
Confidence 9998777776678899999999999975422 22446788999999999863
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=6.2e-09 Score=118.79 Aligned_cols=161 Identities=14% Similarity=0.091 Sum_probs=90.4
Q ss_pred CCCCcEEeecCCCCccccC-CCCCCccCcceEEeccccCcccccccCCCCCccceeeccccCC----CCCCcccCC----
Q 035550 1161 NTSLETISIDSCGNLVSFP-EGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIGGA----LPSLEEEDG---- 1231 (1385)
Q Consensus 1161 l~~L~~L~L~~n~~l~~~~-~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~----~~~~~~~~~---- 1231 (1385)
+++|++|+|.+ . +..++ ..|..|++|++|++.+|.+....+..|.++.++..+.+..+.. ...-...+.
T Consensus 100 ~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 78888888877 4 44444 4566778888888888776655556677777666666543110 000000010
Q ss_pred ----------------------------------------------CCCCcceeEecCCcchhhhhhhcCccCCCCCccc
Q 035550 1232 ----------------------------------------------LPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLR 1265 (1385)
Q Consensus 1232 ----------------------------------------------~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~ 1265 (1385)
.+++|++|+|++|.... .....|.++++|+
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~----I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT----IPDFTFAQKKYLL 253 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE----ECTTTTTTCTTCC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce----ecHhhhhCCCCCC
Confidence 15566666666665322 1224566666666
Q ss_pred eEEecccCCccccchhhhhhccCcCCCCcccc-eeecccccccccccc-cCCCCCCCCeEeccCCCCCCCCCCCCC
Q 035550 1266 YLLISGCDDDMVSFALEDKRLGTALPLPASLT-SLWIFNFPNLERLSS-SIVDLQNLTELKLHNCPKLKYFPEKGL 1339 (1385)
Q Consensus 1266 ~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~-~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~ 1339 (1385)
.|++.+| +..++ ..+|..+++|+ .+++.+ .++.|+. .|.+|++|+.++++++ +++.++...+
T Consensus 254 ~l~l~~n---i~~I~------~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF 317 (329)
T 3sb4_A 254 KIKLPHN---LKTIG------QRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELF 317 (329)
T ss_dssp EEECCTT---CCEEC------TTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTT
T ss_pred EEECCcc---cceeh------HHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccchhhh
Confidence 6666664 11111 23455666666 666665 5666653 5666666666666553 4666655444
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.84 E-value=6.9e-09 Score=105.04 Aligned_cols=106 Identities=12% Similarity=-0.053 Sum_probs=79.0
Q ss_pred ccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeecc
Q 035550 1139 SLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIG 1218 (1385)
Q Consensus 1139 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~ 1218 (1385)
+.+.|++++|.+.. +|..+ .++|++|+|++|.+.+..|..+..+++|++|+|++|.+.+..+..|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 45677777775444 55444 3778888888888666667778888888888888888665555567888888888888
Q ss_pred ccCCCCCCcccCCCCCCcceeEecCCcch
Q 035550 1219 IGGALPSLEEEDGLPTNLQSLNIWGNMEI 1247 (1385)
Q Consensus 1219 ~n~~~~~~~~~~~~~~~L~~L~L~~n~~~ 1247 (1385)
+|.+.+..+..+..+++|++|+|++|+..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 88876666656778888888888888754
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.84 E-value=9.7e-08 Score=110.99 Aligned_cols=125 Identities=10% Similarity=-0.003 Sum_probs=61.8
Q ss_pred ccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCc-----cccCCCCCCccCcceEEeccccCcccccccCCCCCccc
Q 035550 1139 SLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNL-----VSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQ 1213 (1385)
Q Consensus 1139 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l-----~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~ 1213 (1385)
+|+.+.+. ++....-..+|.++++|+.+++.+|... ..-+..|..|++|+.++|.++ +...-...|.+|++|+
T Consensus 249 ~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 249 GITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVT 326 (401)
T ss_dssp CCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCC
T ss_pred CccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCcc
Confidence 45555552 2233333455666667777766665432 122344555666666666632 2222234566666666
Q ss_pred eeeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCC-ccceEEecc
Q 035550 1214 ELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFS-SLRYLLISG 1271 (1385)
Q Consensus 1214 ~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~-~L~~L~l~~ 1271 (1385)
.+.|..+ ....-+..|..+ +|+.+++++|.... .....|.+++ +++.|.+..
T Consensus 327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~----l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ----VFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB----CCCSSCCCSCTTCCEEEECG
T ss_pred EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc----cccccccCCCCCccEEEeCH
Confidence 6666433 222223345555 66666666654211 1123344442 455555554
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.81 E-value=5e-11 Score=124.79 Aligned_cols=126 Identities=16% Similarity=0.088 Sum_probs=91.2
Q ss_pred ccceeEEcccCcchhhh------hhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCcc
Q 035550 1139 SLKSLVVWSCSKLESIA------ERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSL 1212 (1385)
Q Consensus 1139 ~L~~L~L~~~~~~~~~~------~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L 1212 (1385)
.++.++++.+.+.+.+| ..+..+++|++|++++|. +..+| .+..+++|++|++++|.+ ..+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLI-KKIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEEE-CSCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCCc-ccccchhhcCCcC
Confidence 44445555554444444 478889999999999988 44577 777888999999999974 4677777778899
Q ss_pred ceeeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEeccc
Q 035550 1213 QELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGC 1272 (1385)
Q Consensus 1213 ~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 1272 (1385)
+.|++++|.+.+ +| .+..+++|++|++++|.+...... ..+..+++|++|++++|
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~---~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEI---DKLAALDKLEDLLLAGN 150 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHH---HHHTTTTTCSEEEECSC
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHH---HHHhcCCCCCEEEecCC
Confidence 999999887554 55 566788888888888875432211 24567788888888876
No 151
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.81 E-value=2.1e-09 Score=122.66 Aligned_cols=268 Identities=16% Similarity=0.114 Sum_probs=138.9
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.+++|++..++++..++..... .......|.|+|++|+|||++|+.+++. ... ..+++.++......
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~------- 78 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPG------- 78 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHH-------
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChH-------
Confidence 4589999999999888753211 0112356889999999999999999873 221 23344433322211
Q ss_pred HHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccccccccCcccCC------------------CCCcEEE
Q 035550 197 LSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPFEAG------------------APGSKII 258 (1385)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~------------------~~gs~il 258 (1385)
++...+...+ .++.+|++||+..-.....+.+...+... ..+.++|
T Consensus 79 ---------------~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 79 ---------------DLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp ---------------HHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred ---------------HHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 1222222211 34568888888543322222222211110 1235666
Q ss_pred EEccchh-Hhhhh-CC-CCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHHhhhhcC--
Q 035550 259 VTARNQG-VAAIM-GT-APAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRG-- 333 (1385)
Q Consensus 259 vTtR~~~-v~~~~-~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~-- 333 (1385)
.||.... +...+ .. ...+++.+++.++..+++.+.+........ .+....+++.++|.|-.+..+...+..
T Consensus 143 ~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 143 GATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT----EEAALEIGRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred EeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 6665432 21111 11 247899999999999998887643221111 245677999999999887766544321
Q ss_pred ----C--CCHHHHHHHHhhhhhhhccccccchHHHHHhhhcCChhhhhhhhhhcccCCCc-----------ccChHHH--
Q 035550 334 ----K--DDRREWEDVLSSKIWELQEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDY-----------EFEEEEI-- 394 (1385)
Q Consensus 334 ----~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~-----------~~~~~~l-- 394 (1385)
. -+.+....++.... ..+..++...+..+..+.-...+- .+++..+
T Consensus 219 ~~~~~~~i~~~~~~~~~~~~~---------------~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~ 283 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAALG---------------LDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEE 283 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHHHT---------------CCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHhc---------------ccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHH
Confidence 1 12333333333211 112233333333333322111111 1222222
Q ss_pred --HHHHHHcCCCccCCCCCcHHHHHHHHHH-HHHHcCCccc
Q 035550 395 --ILLWCASGFLGHKESGNPIEDLGRKFFQ-ELRSRSFFQQ 432 (1385)
Q Consensus 395 --i~~w~a~g~~~~~~~~~~~~~~~~~~~~-~L~~~sll~~ 432 (1385)
-.+-+..|++.....+....+.|.+|+. ++.+|+|||+
T Consensus 284 ~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 284 VHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 2234567887655555666778888887 8888888874
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.81 E-value=1.1e-08 Score=103.88 Aligned_cols=104 Identities=13% Similarity=-0.013 Sum_probs=72.8
Q ss_pred ceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeecccc
Q 035550 1141 KSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIG 1220 (1385)
Q Consensus 1141 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n 1220 (1385)
+.+++++|.+ +.+|..+. ++|++|+|++|.+.+..|..+..+++|++|+|++|.+.+..+..|..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 5666766654 44555443 67888888888866655667777888888888888755544445677888888888888
Q ss_pred CCCCCCcccCCCCCCcceeEecCCcch
Q 035550 1221 GALPSLEEEDGLPTNLQSLNIWGNMEI 1247 (1385)
Q Consensus 1221 ~~~~~~~~~~~~~~~L~~L~L~~n~~~ 1247 (1385)
.+....+..+..+++|++|+|++|++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 766555545777888888888888744
No 153
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.79 E-value=1e-08 Score=117.08 Aligned_cols=186 Identities=17% Similarity=0.193 Sum_probs=113.6
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccC-CcEEEEEeCCCCCHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF-DLKAWTCVSDDFDVIRLTKSI 195 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i 195 (1385)
.+++|++..++.+..++.... .+.+.|+|++|+||||+|+.+++... ...+ ..++++..+...... ..+++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~-~i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGID-VVRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHH-HHHTH
T ss_pred HHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChH-HHHHH
Confidence 458999999999999986532 23388999999999999999987321 1111 123344333322221 11222
Q ss_pred HHHhcCCCCCCccCHHHHHHHHHhHc-CCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchh-Hhhhh-CC
Q 035550 196 LLSIASDQIVDNHDLNKLQEELKKKL-SPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQG-VAAIM-GT 272 (1385)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~-~~ 272 (1385)
+..+.... ..+ .+++.++|+||++.-....++.+...+.....++++|+||+... +...+ ..
T Consensus 93 ~~~~~~~~---------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr 157 (323)
T 1sxj_B 93 IKHFAQKK---------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ 157 (323)
T ss_dssp HHHHHHBC---------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHhcc---------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhh
Confidence 22211000 012 35688999999966544555556555555456778888886643 21211 22
Q ss_pred CCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCch-HHHHHhh
Q 035550 273 APAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPL-AAKTLGG 329 (1385)
Q Consensus 273 ~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~ 329 (1385)
...+++.+++.++..+++...+........ .+....|++.++|.|. |+..+..
T Consensus 158 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 158 CAILRYSKLSDEDVLKRLLQIIKLEDVKYT----NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ceEEeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 347999999999999999887532221111 2456779999999995 4444433
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.74 E-value=2.4e-08 Score=101.04 Aligned_cols=104 Identities=18% Similarity=0.102 Sum_probs=88.2
Q ss_pred CCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeeccccCCCCCCcccCCCCCCcceeEec
Q 035550 1163 SLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIGGALPSLEEEDGLPTNLQSLNIW 1242 (1385)
Q Consensus 1163 ~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~ 1242 (1385)
+.+.+++++|. ++.+|..+. ++|++|+|++|.+.+..|..|..+++|++|+|++|.+....+..+..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~-l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKS-LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCC-cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 45789999998 667887664 699999999999888888899999999999999999887777678899999999999
Q ss_pred CCcchhhhhhhcCccCCCCCccceEEecccC
Q 035550 1243 GNMEIWKSMIERGRGFHRFSSLRYLLISGCD 1273 (1385)
Q Consensus 1243 ~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1273 (1385)
+|.+... .+..+.++++|+.|+|++|.
T Consensus 87 ~N~l~~~----~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 87 DNQLKSI----PRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SSCCCCC----CTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEe----CHHHhcCCCCCCEEEeCCCC
Confidence 9985432 22458899999999999974
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.71 E-value=3.3e-08 Score=100.33 Aligned_cols=103 Identities=17% Similarity=0.110 Sum_probs=86.9
Q ss_pred CcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeeccccCCCCCCcccCCCCCCcceeEecC
Q 035550 1164 LETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIGGALPSLEEEDGLPTNLQSLNIWG 1243 (1385)
Q Consensus 1164 L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~ 1243 (1385)
-+.+++++|. ++.+|..+. ++|++|+|++|.+.+..|..|.++++|+.|+|++|.+.+..+..+..+++|++|+|++
T Consensus 14 ~~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCC-CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 3789999998 678888765 6999999999998888888999999999999999987776665678899999999999
Q ss_pred CcchhhhhhhcCccCCCCCccceEEecccC
Q 035550 1244 NMEIWKSMIERGRGFHRFSSLRYLLISGCD 1273 (1385)
Q Consensus 1244 n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1273 (1385)
|.+... .+..+..+++|+.|+|++|.
T Consensus 91 N~l~~l----~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NHLKSI----PRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SCCCCC----CTTTTTTCTTCSEEECCSSC
T ss_pred Ccccee----CHHHhccccCCCEEEeCCCC
Confidence 985422 22458889999999999974
No 156
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.71 E-value=4.9e-10 Score=117.20 Aligned_cols=102 Identities=19% Similarity=0.240 Sum_probs=80.5
Q ss_pred cccccCCceeEEEEcCcccccccccccCCccccEEecccccccccchhhhccCCccEEecCCCcchhhhhhcccccCCCC
Q 035550 524 PKLFKLQRLRVFSLRGYYISELPDSFGDLRYLRYLNLSLTEIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLH 603 (1385)
Q Consensus 524 ~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 603 (1385)
..+..+++|++|++++|.++.+| .++++.+|++|++++|.++.+|..+..+++|++|++++| .+..+| .++.+++|+
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSS
T ss_pred HHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCC
Confidence 36678888888888888888888 788888888888888888888888888888888888886 566676 588888888
Q ss_pred eeecCCCCCcccccC--CCCcccccccc
Q 035550 604 HLDNLDTGSLEEMPL--GIGKLTCLQTL 629 (1385)
Q Consensus 604 ~L~l~~~~~~~~lp~--~i~~L~~L~~L 629 (1385)
+|++++| .+..+|. .++.+++|++|
T Consensus 119 ~L~l~~N-~i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 119 VLYMSNN-KITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp EEEESEE-ECCCHHHHHHHTTTTTCSEE
T ss_pred EEECCCC-cCCchhHHHHHhcCCCCCEE
Confidence 8888888 5666554 46666666666
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.69 E-value=8e-07 Score=103.25 Aligned_cols=105 Identities=10% Similarity=-0.027 Sum_probs=78.9
Q ss_pred cccceeEEcccCcc-----hhhhhhcCCCCCCcEEeecCCCCccccC-CCCCCccCcceEEeccccCcccccccCCCCCc
Q 035550 1138 SSLKSLVVWSCSKL-----ESIAERLDNNTSLETISIDSCGNLVSFP-EGGLPCVKLRMLAITNCKRLEALPKGLHNLTS 1211 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~-----~~~~~~l~~l~~L~~L~L~~n~~l~~~~-~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~ 1211 (1385)
++|+.+++.++... ...+.+|.++++|+.++|.+ . +..++ ..|..+.+|+.+.|..+ +...-+..|.++ +
T Consensus 271 ~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~-i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~ 346 (401)
T 4fdw_A 271 PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-S-IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-G 346 (401)
T ss_dssp TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-T-CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-C
T ss_pred CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-c-eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-C
Confidence 57788888776543 34467899999999999994 3 55554 56778899999999766 334445678999 9
Q ss_pred cceeeccccCCCCCCcccCCCC-CCcceeEecCCcc
Q 035550 1212 LQELTIGIGGALPSLEEEDGLP-TNLQSLNIWGNME 1246 (1385)
Q Consensus 1212 L~~L~L~~n~~~~~~~~~~~~~-~~L~~L~L~~n~~ 1246 (1385)
|+.+++.+|......+..|..+ .+++.|++..+..
T Consensus 347 L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 347 IKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred CCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 9999999997666555566655 5889999988763
No 158
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.61 E-value=2.5e-09 Score=123.12 Aligned_cols=135 Identities=16% Similarity=0.044 Sum_probs=75.2
Q ss_pred cccceeEEcccCcchhhh----hhcC-CCCCCcEEeecCCCCccccCCCC-CCccCcceEEeccccCcccccccC-----
Q 035550 1138 SSLKSLVVWSCSKLESIA----ERLD-NNTSLETISIDSCGNLVSFPEGG-LPCVKLRMLAITNCKRLEALPKGL----- 1206 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~----~~l~-~l~~L~~L~L~~n~~l~~~~~~~-~~l~~L~~L~L~~n~~~~~lp~~l----- 1206 (1385)
+.|+.|++++|.+..... ..+. ..++|++|+|++|.+.......+ ..+++|++|+|++|.+.......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 567788888887665332 2233 23678888888887433211112 234567777777776543322222
Q ss_pred CCCCccceeeccccCCCC----CCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEeccc
Q 035550 1207 HNLTSLQELTIGIGGALP----SLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGC 1272 (1385)
Q Consensus 1207 ~~l~~L~~L~L~~n~~~~----~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 1272 (1385)
...++|++|+|++|.+.. .++..+...++|++|+|++|.+...........+...++|+.|+|++|
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 245667777777776432 122333455667777777776544333222334555566666666665
No 159
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.56 E-value=2.2e-07 Score=102.10 Aligned_cols=171 Identities=12% Similarity=0.038 Sum_probs=105.2
Q ss_pred eeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccc------cCCcEEEEEeCCCCCHHHH
Q 035550 118 KVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQD------HFDLKAWTCVSDDFDVIRL 191 (1385)
Q Consensus 118 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~------~f~~~~wv~~~~~~~~~~~ 191 (1385)
.+.|||+|.++|...|...- .......+.|+|++|+|||++|+.|++...... .| .++.+++....+...+
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i--~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~ 97 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSL--MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHH
T ss_pred ccCCHHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHH
Confidence 37899999999998886532 123456789999999999999999998432111 12 3567777787888999
Q ss_pred HHHHHHHhcCCCCCCccCHHHHHHHHHhH--cCCCeEEEEEecCCCCCccccccccCcccCC-CCCc--EEEEEccchhH
Q 035550 192 TKSILLSIASDQIVDNHDLNKLQEELKKK--LSPKKFLLVLDDVWNENYNDWDRLRPPFEAG-APGS--KIIVTARNQGV 266 (1385)
Q Consensus 192 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~~--l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs--~ilvTtR~~~v 266 (1385)
+..|++++.+.........+.+...+... -+++++++|||++..- .+-+.+...+.+. ...+ .||.++...+.
T Consensus 98 ~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l--~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 98 YEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENL--LSEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSS--CCTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHh--hcchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 99999999765332222334444444432 2467899999999332 2222222222211 1222 33334433221
Q ss_pred ---------hhhhCCCCcccCCCCChhhhHHHhhhhc
Q 035550 267 ---------AAIMGTAPAYQLKKLSNDDCLSVFAQHS 294 (1385)
Q Consensus 267 ---------~~~~~~~~~~~l~~L~~~~~~~lf~~~a 294 (1385)
...++ ...+.+.+.+.+|-.+++.+++
T Consensus 176 ~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 176 IREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred chhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 11221 2468899999999999888775
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.54 E-value=1.1e-07 Score=109.61 Aligned_cols=106 Identities=18% Similarity=0.050 Sum_probs=81.0
Q ss_pred eeEEcccCcchhhhhhcCCCCCCcEEeecC-CCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeecccc
Q 035550 1142 SLVVWSCSKLESIAERLDNNTSLETISIDS-CGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIG 1220 (1385)
Q Consensus 1142 ~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~-n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n 1220 (1385)
.++.++++.+..+|. +..+++|++|+|++ |.+.+..+..+..+++|++|+|++|.+.+..|..|.++++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 456666645566787 88888999999986 7754444467888899999999999877777778888999999999988
Q ss_pred CCCCCCcccCCCCCCcceeEecCCcchhh
Q 035550 1221 GALPSLEEEDGLPTNLQSLNIWGNMEIWK 1249 (1385)
Q Consensus 1221 ~~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 1249 (1385)
.+.+..+..+..++ |+.|+|.+|++...
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 87765555555555 99999998876543
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.49 E-value=2.2e-06 Score=100.38 Aligned_cols=126 Identities=16% Similarity=0.128 Sum_probs=58.1
Q ss_pred CCCccCcceEEeccccCcccccccCCCCCccceeeccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCC
Q 035550 1182 GLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRF 1261 (1385)
Q Consensus 1182 ~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l 1261 (1385)
+..+..|+.+.+..+. .......+..++.|+.+...... .....+..+.+|+.+.+..+- .......|.++
T Consensus 249 f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~i-----~~I~~~aF~~c 319 (394)
T 4fs7_A 249 FYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDSV-----KFIGEEAFESC 319 (394)
T ss_dssp TTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTTC-----CEECTTTTTTC
T ss_pred ccccccceeEEcCCCc-ceeeccccccccccceeccCcee---ecccccccccccccccccccc-----ceechhhhcCC
Confidence 3444455555554432 22222344455555555443321 111133445555555554431 01112345566
Q ss_pred CccceEEecccCCccccchhhhhhccCcCCCCcccceeecccccccccccc-cCCCCCCCCeEeccC
Q 035550 1262 SSLRYLLISGCDDDMVSFALEDKRLGTALPLPASLTSLWIFNFPNLERLSS-SIVDLQNLTELKLHN 1327 (1385)
Q Consensus 1262 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~ 1327 (1385)
++|+.++|..+ +..++ ..++..+++|+.+.+.. +++.|+. .+.+|++|+.+++..
T Consensus 320 ~~L~~i~lp~~---v~~I~------~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 320 TSLVSIDLPYL---VEEIG------KRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTCCEECCCTT---CCEEC------TTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred CCCCEEEeCCc---ccEEh------HHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 66666666432 11111 13455566666666644 3555544 566666676666653
No 162
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.48 E-value=1.2e-07 Score=108.42 Aligned_cols=183 Identities=14% Similarity=0.124 Sum_probs=111.3
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccc-C-CcEEEEEeCCCCCHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDH-F-DLKAWTCVSDDFDVIRLTKS 194 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~-f-~~~~wv~~~~~~~~~~~~~~ 194 (1385)
.+++|+++.++.+..++.... .+.+.++|++|+||||+|+.+++. .... + ...+.+..+...... ..+.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~-~~~~ 95 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS------MPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGIN-VIRE 95 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC------CCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHHH-TTHH
T ss_pred HHhhCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCchH-HHHH
Confidence 358999999999999986542 234889999999999999999873 2111 1 112333332211100 0011
Q ss_pred HHHHhcCCCCCCccCHHHHHHHHHh-Hc-CCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchhH-hhhh-
Q 035550 195 ILLSIASDQIVDNHDLNKLQEELKK-KL-SPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQGV-AAIM- 270 (1385)
Q Consensus 195 i~~~~~~~~~~~~~~~~~~~~~l~~-~l-~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~~~~- 270 (1385)
.+. +.... .+ .+++.++|+||++.-....++.+...+.....++++|+||....- ...+
T Consensus 96 ~~~-----------------~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 158 (327)
T 1iqp_A 96 KVK-----------------EFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 158 (327)
T ss_dssp HHH-----------------HHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHH-----------------HHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH
Confidence 111 10100 01 256889999999665545556666555555567788888876432 1111
Q ss_pred CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHHhh
Q 035550 271 GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGG 329 (1385)
Q Consensus 271 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 329 (1385)
.....+++.+++.++..+++...+........ .+....|++.++|.|..+..+..
T Consensus 159 sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 159 SRCAIFRFRPLRDEDIAKRLRYIAENEGLELT----EEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp HTEEEEECCCCCHHHHHHHHHHHHHTTTCEEC----HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhCcEEEecCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHCCCCHHHHHHHHH
Confidence 11237899999999999999877643221111 24566788999999986654433
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.43 E-value=2e-07 Score=107.28 Aligned_cols=84 Identities=18% Similarity=0.131 Sum_probs=42.2
Q ss_pred cccCCceeEEEEcC-ccccccc-ccccCCccccEEecccccccccc-hhhhccCCccEEecCCCcchhhhhhcccccCCC
Q 035550 526 LFKLQRLRVFSLRG-YYISELP-DSFGDLRYLRYLNLSLTEIRTLP-ESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKL 602 (1385)
Q Consensus 526 ~~~l~~Lr~L~L~~-~~i~~lp-~~i~~L~~L~~L~L~~~~i~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 602 (1385)
+..+.+|++|+|++ |.|+.+| ..|++|.+|++|+|++|+|+.+| ..|.+|++|++|+|++| .+..+|..+.....|
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSL 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccCCc
Confidence 55555555555553 5555554 34555555555555555555443 34455555555555554 344444432222225
Q ss_pred CeeecCCC
Q 035550 603 HHLDNLDT 610 (1385)
Q Consensus 603 ~~L~l~~~ 610 (1385)
++|++.+|
T Consensus 106 ~~l~l~~N 113 (347)
T 2ifg_A 106 QELVLSGN 113 (347)
T ss_dssp CEEECCSS
T ss_pred eEEEeeCC
Confidence 55555555
No 164
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.39 E-value=8e-07 Score=103.51 Aligned_cols=196 Identities=14% Similarity=0.148 Sum_probs=111.1
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.+++|++..++.+..++.... ....+.|+|++|+||||+|+.+++.......+. ............+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHh
Confidence 348999999999999986542 134788999999999999999986321111110 00000000011111
Q ss_pred HH-------hcCCCCCCccCHHHHHHHHHhH-cCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchh-Hh
Q 035550 197 LS-------IASDQIVDNHDLNKLQEELKKK-LSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQG-VA 267 (1385)
Q Consensus 197 ~~-------~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~ 267 (1385)
.. +.............+.+.+... ..+++.++|+||++.-+...++.+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 00 0000000112233333322211 235678999999965444455555555544445667777776432 22
Q ss_pred hhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHHh
Q 035550 268 AIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLG 328 (1385)
Q Consensus 268 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 328 (1385)
..+ .....+++.+++.++..+++.+.+........ .+....|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~----~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHCCCCHHHHHHHH
Confidence 211 22357899999999999999876532211111 2456679999999998776554
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.35 E-value=1.2e-05 Score=94.12 Aligned_cols=187 Identities=14% Similarity=0.037 Sum_probs=129.2
Q ss_pred ccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeecc
Q 035550 1139 SLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIG 1218 (1385)
Q Consensus 1139 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~ 1218 (1385)
+|+.+.+..+ ........|.+++.|+.+.+..+. ..+........+|+.+.+.... ...-...+.+++.|+.+.+.
T Consensus 186 ~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~--~~i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~ 261 (394)
T 4fs7_A 186 KLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL--YYLGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQ 261 (394)
T ss_dssp TCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC--CEECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEEC
T ss_pred CceEEEcCCC-ceEeCchhhccccccceeecCCCc--eEeehhhcccCCCceEEECCCc-eecccccccccccceeEEcC
Confidence 4555555443 222234567788888888877654 3344445556788888887642 33334567889999999997
Q ss_pred ccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCCCCcccce
Q 035550 1219 IGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPLPASLTS 1298 (1385)
Q Consensus 1219 ~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~ 1298 (1385)
.+. .......+..+..++.+....+.. ....+..+.+|+.+.+..+ +..++ ..++..+++|++
T Consensus 262 ~~~-~~i~~~~F~~~~~l~~~~~~~~~i-------~~~~F~~~~~L~~i~l~~~---i~~I~------~~aF~~c~~L~~ 324 (394)
T 4fs7_A 262 NNK-LRIGGSLFYNCSGLKKVIYGSVIV-------PEKTFYGCSSLTEVKLLDS---VKFIG------EEAFESCTSLVS 324 (394)
T ss_dssp CTT-CEECSCTTTTCTTCCEEEECSSEE-------CTTTTTTCTTCCEEEECTT---CCEEC------TTTTTTCTTCCE
T ss_pred CCc-ceeeccccccccccceeccCceee-------ccccccccccccccccccc---cceec------hhhhcCCCCCCE
Confidence 653 333444677788999888876541 1246788999999999764 22211 245778899999
Q ss_pred eecccccccccccc-cCCCCCCCCeEeccCCCCCCCCCCCCCC--CccceeeecC
Q 035550 1299 LWIFNFPNLERLSS-SIVDLQNLTELKLHNCPKLKYFPEKGLP--SSLLQLQIVG 1350 (1385)
Q Consensus 1299 L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~--~sL~~L~i~~ 1350 (1385)
+++.+ .++.|+. .+.+|++|+.+++.. +++.+++..+. .+|+.+++..
T Consensus 325 i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 325 IDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp ECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred EEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 99975 5888865 788899999999976 38888876664 6888888854
No 166
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.33 E-value=1.1e-06 Score=99.84 Aligned_cols=181 Identities=13% Similarity=0.110 Sum_probs=108.9
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCC-cEEEEEeCCCCCHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFD-LKAWTCVSDDFDVIRLTKSI 195 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 195 (1385)
.+++|++..++.+..++... ..+.+.++|++|+|||++|+.+++... ...+. ..+.+..+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~-------- 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERG-------- 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTC--------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccC--------
Confidence 35899999999998888543 223488999999999999999987310 11111 122333332111
Q ss_pred HHHhcCCCCCCccCHHHHHHHHHhH--c-CCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchh-Hhhhh-
Q 035550 196 LLSIASDQIVDNHDLNKLQEELKKK--L-SPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQG-VAAIM- 270 (1385)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~- 270 (1385)
..........+... + .+++.++|+|++..-.....+.+...+.....+.++|+||.... +...+
T Consensus 82 -----------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 150 (319)
T 2chq_A 82 -----------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (319)
T ss_dssp -----------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH
T ss_pred -----------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH
Confidence 01111111111111 1 25688999999955444445566666655456678888776543 22211
Q ss_pred CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHH
Q 035550 271 GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 327 (1385)
Q Consensus 271 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 327 (1385)
.....+++.+++.++..+++...+........ .+....+++.++|.+-.+...
T Consensus 151 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp TTCEEEECCCCCHHHHHHHHHHHHHTTCCCBC----HHHHHHHHHTTTTCHHHHHHH
T ss_pred hhCeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 22347899999999999998877643221111 245567889999998765443
No 167
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.24 E-value=6.5e-08 Score=111.30 Aligned_cols=136 Identities=17% Similarity=0.050 Sum_probs=69.3
Q ss_pred cccceeEEcccCcchhhhh-hcCCCCCCcEEeecCCCCccccCCCC-----CCccCcceEEeccccCcc----cccccCC
Q 035550 1138 SSLKSLVVWSCSKLESIAE-RLDNNTSLETISIDSCGNLVSFPEGG-----LPCVKLRMLAITNCKRLE----ALPKGLH 1207 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~~-~l~~l~~L~~L~L~~n~~l~~~~~~~-----~~l~~L~~L~L~~n~~~~----~lp~~l~ 1207 (1385)
++|++|+|++|.+...... ....+++|++|+|++|.+...-...+ ...++|++|+|++|.+.. .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 3566666666655443222 12234456666666665332111111 123466666666666432 2333345
Q ss_pred CCCccceeeccccCCCCC----CcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecccC
Q 035550 1208 NLTSLQELTIGIGGALPS----LEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCD 1273 (1385)
Q Consensus 1208 ~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1273 (1385)
.+++|++|+|++|.+... ++..+..+++|++|+|++|.+...........+...++|++|+|++|.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 566666777766664321 233344455677777777765433332222334455667777777653
No 168
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.20 E-value=1.7e-06 Score=89.89 Aligned_cols=45 Identities=27% Similarity=0.411 Sum_probs=37.8
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
..++||+++++++.+++... ..+.+.|+|++|+|||++|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999998543 2356789999999999999999873
No 169
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.14 E-value=1e-06 Score=95.47 Aligned_cols=172 Identities=14% Similarity=0.100 Sum_probs=96.3
Q ss_pred eeeec---hhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHH
Q 035550 118 KVYGR---ETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKS 194 (1385)
Q Consensus 118 ~~vGr---~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 194 (1385)
+|+|+ +..++.+..+.... ..+.+.|+|++|+||||+|+.+++. .......+.|+.+..-.+.
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~------ 94 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI------ 94 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS------
T ss_pred hccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH------
Confidence 45653 35556666555332 2467889999999999999999873 3323344667765432110
Q ss_pred HHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccc--cccccCcccCC-CCC-cEEEEEccchh-----
Q 035550 195 ILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYND--WDRLRPPFEAG-APG-SKIIVTARNQG----- 265 (1385)
Q Consensus 195 i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~ilvTtR~~~----- 265 (1385)
+ . +.+ +.+ .++.+||+||++.-.... .+.+...+... ..+ .++|+||+...
T Consensus 95 ----~----~----------~~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 ----S----T----------ALL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp ----C----G----------GGG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred ----H----H----------HHH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 0 0 000 011 345689999995432222 22232222110 112 24777776322
Q ss_pred ----HhhhhCCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHH
Q 035550 266 ----VAAIMGTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 327 (1385)
Q Consensus 266 ----v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 327 (1385)
+...+.....+++.+++.++..+++...+..... ... .+....|++.++|.+-.+..+
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL-QLP---EDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC-CCC---HHHHHHHHHHTTTCHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHccCCHHHHHHH
Confidence 1222222257899999999999999887632221 111 245667888999987665543
No 170
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.11 E-value=2.5e-06 Score=97.04 Aligned_cols=62 Identities=23% Similarity=0.341 Sum_probs=38.5
Q ss_pred hhhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccC--CCCCccceeecc
Q 035550 1154 IAERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGL--HNLTSLQELTIG 1218 (1385)
Q Consensus 1154 ~~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l--~~l~~L~~L~L~ 1218 (1385)
++..+..+|+|+.|+|++|..+ .++. + .+++|++|+|..|.+.......+ ..+|+|+.|+|+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 3344566788888888877422 2333 2 36788888888776543332223 267788888775
No 171
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.08 E-value=1.2e-05 Score=91.69 Aligned_cols=177 Identities=18% Similarity=0.201 Sum_probs=100.0
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.+++|++..++++..++..... .......|.|+|++|+|||++|+.+++. .... .+.+.+....
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~---~~~~~~~~~~---------- 92 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSAN---IKTTAAPMIE---------- 92 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCC---EEEEEGGGCC----------
T ss_pred HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEecchhcc----------
Confidence 4689999999999998865311 1123456889999999999999999873 2222 2233332211
Q ss_pred HHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccccccccCcccCC------------------CCCcEEE
Q 035550 197 LSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPFEAG------------------APGSKII 258 (1385)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~------------------~~gs~il 258 (1385)
........+.. ..+..+|+||++..-.......+...+... .++.++|
T Consensus 93 ------------~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 93 ------------KSGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp ------------SHHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred ------------chhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 11112222221 235568888888543322222222222111 1134566
Q ss_pred EEccchhH-hhhh-C-CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHH
Q 035550 259 VTARNQGV-AAIM-G-TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 327 (1385)
Q Consensus 259 vTtR~~~v-~~~~-~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 327 (1385)
.||..... ...+ . ....+++.+++.++...++.+.+....... -.+....|++.+.|.|-.+..+
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~----~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTC----EEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEE----CHHHHHHHHHTTTTCHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHCcCHHHHHHH
Confidence 66554321 1111 1 135789999999999999987763222111 1345667888999998555433
No 172
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.05 E-value=6.6e-06 Score=94.85 Aligned_cols=195 Identities=13% Similarity=0.113 Sum_probs=109.1
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCC-cEEEEEeCCCCCHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFD-LKAWTCVSDDFDVIRLTKSI 195 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 195 (1385)
.+++|+++.++.+..++.... ...+.|+|++|+||||+|+.+++.......+. .++.+..+....... .++.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VREK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HTTH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HHHH
Confidence 458999999999999985432 22388999999999999999987421111121 233343333223222 2222
Q ss_pred HHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchh-Hhhhh-CCC
Q 035550 196 LLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQG-VAAIM-GTA 273 (1385)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~-~~~ 273 (1385)
+..+........... .....-.+++-+|++|++..-.......+...+.......++|++|.... +...+ ...
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 222211110000000 00111124567999999854443344445554444445567777765432 21111 112
Q ss_pred CcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHH
Q 035550 274 PAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 327 (1385)
Q Consensus 274 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 327 (1385)
..+++.+++.++....+...+........ .+....|++.++|.|-.+..+
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENVKCD----DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHTSSCHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 47889999999999998876533221111 245677999999998765443
No 173
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.00 E-value=3e-06 Score=83.65 Aligned_cols=88 Identities=17% Similarity=0.243 Sum_probs=46.1
Q ss_pred CcceeEecCCcchhhhhhhcCccCCCCCccceEEecccCCccccchhhhhhccCcCCC---Ccccceeeccccccccc--
Q 035550 1235 NLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGCDDDMVSFALEDKRLGTALPL---PASLTSLWIFNFPNLER-- 1309 (1385)
Q Consensus 1235 ~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~---~~~L~~L~l~~~~~l~~-- 1309 (1385)
.|++||+++|.+..... ..+.++++|+.|+|++|.. ++|..+...... +++|++|++++|++++.
T Consensus 62 ~L~~LDLs~~~Itd~GL----~~L~~~~~L~~L~L~~C~~------ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGF----DHMEGLQYVEKIRLCKCHY------IEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CEEEEEEESCCCCGGGG----GGGTTCSCCCEEEEESCTT------CCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred eEeEEeCcCCCccHHHH----HHhcCCCCCCEEEeCCCCc------cCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 45556666555322222 2345666777777777631 112222211111 23566666666666654
Q ss_pred ccccCCCCCCCCeEeccCCCCCCC
Q 035550 1310 LSSSIVDLQNLTELKLHNCPKLKY 1333 (1385)
Q Consensus 1310 l~~~~~~l~~L~~L~l~~c~~l~~ 1333 (1385)
+. .+.++++|++|+|++|+++++
T Consensus 132 l~-~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 II-ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HH-HGGGCTTCCEEEEESCTTCCC
T ss_pred HH-HHhcCCCCCEEECCCCCCCCc
Confidence 22 345567777777777776665
No 174
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.00 E-value=9.7e-05 Score=86.23 Aligned_cols=109 Identities=16% Similarity=0.197 Sum_probs=57.6
Q ss_pred hhhcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCccccc-ccCCCCCccceeeccccCCCCCCcccCCCC
Q 035550 1155 AERLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALP-KGLHNLTSLQELTIGIGGALPSLEEEDGLP 1233 (1385)
Q Consensus 1155 ~~~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~ 1233 (1385)
..+|.++.+|+.+.+.++- ...-...+..+.+|+.+.+... +..++ ..|.+|++|+.++|..+ ....-...|..+
T Consensus 258 ~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C 333 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC 333 (394)
T ss_dssp TTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred cceeeecccccEEeccccc-ceecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence 3456667777777775443 2222334556667777776532 23332 45667777777777533 122222345556
Q ss_pred CCcceeEecCCcchhhhhhhcCccCCCCCccceEEeccc
Q 035550 1234 TNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISGC 1272 (1385)
Q Consensus 1234 ~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 1272 (1385)
.+|+.+.|..+- . ......|.+|++|+.+++.++
T Consensus 334 ~~L~~i~ip~sv-~----~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 334 EQLERIAIPSSV-T----KIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTCCEEEECTTC-C----BCCGGGGTTCTTCCEEEESSC
T ss_pred CCCCEEEECccc-C----EEhHhHhhCCCCCCEEEECCc
Confidence 666666664431 0 111134566666666666653
No 175
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.96 E-value=2.5e-06 Score=97.05 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=17.0
Q ss_pred cccceeEEcccCcchhhhhhc--CCCCCCcEEeec
Q 035550 1138 SSLKSLVVWSCSKLESIAERL--DNNTSLETISID 1170 (1385)
Q Consensus 1138 ~~L~~L~L~~~~~~~~~~~~l--~~l~~L~~L~L~ 1170 (1385)
++|+.|+|..|.+.......+ ..+++|++|+|+
T Consensus 193 ~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 456666666555444332222 245666666654
No 176
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.96 E-value=2e-05 Score=92.53 Aligned_cols=160 Identities=17% Similarity=0.143 Sum_probs=93.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccC--CcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF--DLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKL 221 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 221 (1385)
...+.|+|++|+||||||+.+++. ....+ ..++++++. .+..++...+.... . ..+.+.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~~------~----~~~~~~~ 191 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSE------KFLNDLVDSMKEGK------L----NEFREKY 191 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHH------HHHHHHHHHHHTTC------H----HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHH------HHHHHHHHHHHccc------H----HHHHHHh
Confidence 567889999999999999999983 33332 224455432 33444444443221 1 1233334
Q ss_pred CCCeEEEEEecCCCCCc--cccccccCcccC-CCCCcEEEEEccch---------hHhhhhCCCCcccCCCCChhhhHHH
Q 035550 222 SPKKFLLVLDDVWNENY--NDWDRLRPPFEA-GAPGSKIIVTARNQ---------GVAAIMGTAPAYQLKKLSNDDCLSV 289 (1385)
Q Consensus 222 ~~~~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~l 289 (1385)
+.+.-+|++||++.-.. ...+.+...+.. ...|..||+||... .+...+.....+++++++.++..++
T Consensus 192 ~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~i 271 (440)
T 2z4s_A 192 RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSI 271 (440)
T ss_dssp TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHH
T ss_pred cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHH
Confidence 43677999999954321 112223332221 13567888888762 2233333345789999999999999
Q ss_pred hhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHH
Q 035550 290 FAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAK 325 (1385)
Q Consensus 290 f~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 325 (1385)
+.+.+.......++ ++...|++.++|.+-.+.
T Consensus 272 L~~~~~~~~~~i~~----e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 272 ARKMLEIEHGELPE----EVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHHHTCCCCT----THHHHHHHHCCSCHHHHH
T ss_pred HHHHHHHcCCCCCH----HHHHHHHHhcCCCHHHHH
Confidence 98876422211122 335568888888875544
No 177
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.95 E-value=2e-05 Score=94.88 Aligned_cols=198 Identities=16% Similarity=0.179 Sum_probs=106.6
Q ss_pred CeeeechhHHHHHHHHHhcCCc-----------CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCC
Q 035550 117 AKVYGRETEKKEIVELLLRDDL-----------RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD 185 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~-----------~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 185 (1385)
.+++|+++.++++..++..... .+.+..+.+.|+|++|+||||+|+.+++. . .+ .++.+.++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l--~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--L--GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--T--TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--c--CC-CEEEEeCCCc
Confidence 4689999999999999865110 00113468899999999999999999973 2 12 2334444444
Q ss_pred CCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccc---cccccCcccCCCCCcEEEEEcc
Q 035550 186 FDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYND---WDRLRPPFEAGAPGSKIIVTAR 262 (1385)
Q Consensus 186 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~---~~~l~~~l~~~~~gs~ilvTtR 262 (1385)
.... +....+.......... .-.....+ .....+++.+||+|++..-...+ +..+...+.. .+..||+++.
T Consensus 114 ~~~~-~~~~~i~~~~~~~~~~-~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~ 187 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMSVV-GYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICN 187 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCCST-TTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEES
T ss_pred chHH-HHHHHHHHHhccccHH-HHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEc
Confidence 3332 2222222221111000 00000000 00123678899999994422111 1233332322 2334555554
Q ss_pred chh---HhhhhCCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCC-CchHHHHHhh
Q 035550 263 NQG---VAAIMGTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNG-LPLAAKTLGG 329 (1385)
Q Consensus 263 ~~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~~~ 329 (1385)
+.. +.........+++++++.++..+.+...+........+ +....|++.++| ++-|+..+..
T Consensus 188 ~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~----~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 188 ERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP----NVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp CTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT----THHHHHHHHTTTCHHHHHHHHTH
T ss_pred CCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHcCCcHHHHHHHHHH
Confidence 422 22211223468999999999999887766432221222 235568889999 4555655543
No 178
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.89 E-value=2.7e-05 Score=91.12 Aligned_cols=176 Identities=21% Similarity=0.216 Sum_probs=97.3
Q ss_pred CeeeechhHH---HHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCC-CCHHHHH
Q 035550 117 AKVYGRETEK---KEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD-FDVIRLT 192 (1385)
Q Consensus 117 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~ 192 (1385)
.+++|.+..+ ..+...+... ..+.+.|+|++|+||||+|+.+++. ....| +.++.. ..... .
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f-----~~l~a~~~~~~~-i 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANADV-----ERISAVTSGVKE-I 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCEE-----EEEETTTCCHHH-H
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCCe-----EEEEeccCCHHH-H
Confidence 4578988888 6777777543 2467889999999999999999973 22222 222221 11111 1
Q ss_pred HHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEE-Eccchh--Hhhh
Q 035550 193 KSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIV-TARNQG--VAAI 269 (1385)
Q Consensus 193 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~--v~~~ 269 (1385)
+.++... ......+++.+|++|++..-.....+.+...+.. + ...+|. ||.+.. +...
T Consensus 92 r~~~~~a-----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 92 REAIERA-----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSA 152 (447)
T ss_dssp HHHHHHH-----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHH
T ss_pred HHHHHHH-----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHH
Confidence 1111110 1111246788999999965444444555544443 2 233443 555542 1111
Q ss_pred -hCCCCcccCCCCChhhhHHHhhhhccCcCCC---CCchhHHHHHHHHHHhcCCCchHHH
Q 035550 270 -MGTAPAYQLKKLSNDDCLSVFAQHSLGTRDF---SSNKSLEEIGKKIVIKCNGLPLAAK 325 (1385)
Q Consensus 270 -~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~---~~~~~~~~~~~~i~~~~~g~PLai~ 325 (1385)
.....++.+.+++.++...++.+.+...... ....--.+..+.|++.++|.+-.+.
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 1223578899999999999988775331100 0001113455668888888876544
No 179
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.86 E-value=0.00085 Score=78.17 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=16.3
Q ss_pred CCCccCcceEEeccccCcccccccCCCCCccceeecc
Q 035550 1182 GLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIG 1218 (1385)
Q Consensus 1182 ~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~ 1218 (1385)
|..+.+|+.+.+.++. ...-...|.++++|+.+.+.
T Consensus 261 F~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~ 296 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS 296 (394)
T ss_dssp TTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC
T ss_pred eeecccccEEeccccc-ceecCcccccccccccccCC
Confidence 4445555555554332 12222344555555555553
No 180
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.84 E-value=5e-05 Score=87.89 Aligned_cols=197 Identities=13% Similarity=0.070 Sum_probs=99.7
Q ss_pred CeeeechhHHHHH---HHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEe----CCCCCHH
Q 035550 117 AKVYGRETEKKEI---VELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCV----SDDFDVI 189 (1385)
Q Consensus 117 ~~~vGr~~~~~~l---~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~----~~~~~~~ 189 (1385)
.+++|++..++.+ .+.+.... ...+.+.|+|++|+|||++|+.+++. ..... ..+.+.. +......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~--l~~~~-~~~~~~~~~~~~~~~~~~ 116 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDT-PFTAIAGSEIFSLEMSKT 116 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHH--HCSSC-CEEEEEGGGGSCSSSCHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHH--hcccC-Ccccccchhhhhcccchh
Confidence 4699999987764 44443321 22367889999999999999999973 22111 1122222 1223333
Q ss_pred HHHHHHHHHhcCCC----------------------------CC-CccCHHHHHHHHHhHc-----CCC----eEEEEEe
Q 035550 190 RLTKSILLSIASDQ----------------------------IV-DNHDLNKLQEELKKKL-----SPK----KFLLVLD 231 (1385)
Q Consensus 190 ~~~~~i~~~~~~~~----------------------------~~-~~~~~~~~~~~l~~~l-----~~~----~~LlVlD 231 (1385)
....+......+.. .. .......+...+.+.. .++ +.+|++|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 117 EALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 44444433311100 00 0000122222222211 133 4599999
Q ss_pred cCCCCCccccccccCcccCCCCCcEEEEEccc-------------hhHhhh-hCCCCcccCCCCChhhhHHHhhhhccCc
Q 035550 232 DVWNENYNDWDRLRPPFEAGAPGSKIIVTARN-------------QGVAAI-MGTAPAYQLKKLSNDDCLSVFAQHSLGT 297 (1385)
Q Consensus 232 dv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-------------~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~ 297 (1385)
++..-.......+...+...... .++++|.. ..+... ......+++.+++.++..+++...+...
T Consensus 197 Ei~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 197 EVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp SGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred hccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHc
Confidence 99544333344444444332222 34444421 011111 1122357899999999999998776432
Q ss_pred CCCCCchhHHHHHHHHHHhcC-CCchHHH
Q 035550 298 RDFSSNKSLEEIGKKIVIKCN-GLPLAAK 325 (1385)
Q Consensus 298 ~~~~~~~~~~~~~~~i~~~~~-g~PLai~ 325 (1385)
..... .+....|++.+. |.|-.+.
T Consensus 276 ~~~~~----~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 276 DVEMS----EDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp TCCBC----HHHHHHHHHHHHHSCHHHHH
T ss_pred CCCCC----HHHHHHHHHHhcCCCHHHHH
Confidence 21111 245566888887 7665444
No 181
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.84 E-value=3.8e-05 Score=88.36 Aligned_cols=194 Identities=14% Similarity=0.097 Sum_probs=101.5
Q ss_pred CeeeechhHHHHHHHHH-hcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCc---ccc-ccCCc---------------
Q 035550 117 AKVYGRETEKKEIVELL-LRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDK---QVQ-DHFDL--------------- 176 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~---~~~-~~f~~--------------- 176 (1385)
.+++|.+..++.+..++ .... ... +.|+|+.|+||||+|+.+++.. ... -.++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-----~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-----LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-----CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-----CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 45889999998888877 3321 123 8899999999999999887621 100 00110
Q ss_pred -----EEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccccccccCcccC
Q 035550 177 -----KAWTCVSDDF-DVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPFEA 250 (1385)
Q Consensus 177 -----~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~ 250 (1385)
.+.+..+... ......++++..+..... ..... .+.. +.+++-++|+|++..-+....+.+...+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ-----VDFQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEK 160 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcc-----ccccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHh
Confidence 0111111000 000012222222211110 00000 0000 234667999999965444444455554443
Q ss_pred CCCCcEEEEEccchh-Hhhhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCC-chhHHHHHHHHHHhcCCCchHHHHH
Q 035550 251 GAPGSKIIVTARNQG-VAAIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSS-NKSLEEIGKKIVIKCNGLPLAAKTL 327 (1385)
Q Consensus 251 ~~~gs~ilvTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~-~~~~~~~~~~i~~~~~g~PLai~~~ 327 (1385)
...+.++|++|.+.. +...+ .....+++.+++.++..+.+.+.+.......+ + +....|++.++|.+-.+..+
T Consensus 161 ~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 161 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETK----DILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCS----HHHHHHHHHHTTCHHHHHHH
T ss_pred hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcH----HHHHHHHHHcCCCHHHHHHH
Confidence 345677877776532 22222 22357899999999999999877632221111 2 44566889999988655443
No 182
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.83 E-value=0.0001 Score=80.96 Aligned_cols=171 Identities=12% Similarity=0.131 Sum_probs=89.7
Q ss_pred eeeechhHHHHHHH-------HHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHH
Q 035550 118 KVYGRETEKKEIVE-------LLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIR 190 (1385)
Q Consensus 118 ~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 190 (1385)
.++|....+++++. .+... .....+.+.|+|++|+|||++|+.+++. .... .+.+..+..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~---~~~i~~~~~----- 100 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEE--SNFP---FIKICSPDK----- 100 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHH--HTCS---EEEEECGGG-----
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEeCHHH-----
Confidence 46777777666665 23211 1234578889999999999999999873 2211 122222211
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCC------C---ccc-cccccCccc---CCCCCcEE
Q 035550 191 LTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNE------N---YND-WDRLRPPFE---AGAPGSKI 257 (1385)
Q Consensus 191 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------~---~~~-~~~l~~~l~---~~~~gs~i 257 (1385)
+.+.. .......+...+......+..+|++||+..- . ... .+.+...+. .......|
T Consensus 101 --------~~g~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 --------MIGFS--ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp --------CTTCC--HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred --------hcCCc--hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 10000 0011122333344444567899999998321 0 001 111222221 12233456
Q ss_pred EEEccchhHhhhh---CC-CCcccCCCCCh-hhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCC
Q 035550 258 IVTARNQGVAAIM---GT-APAYQLKKLSN-DDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGL 320 (1385)
Q Consensus 258 lvTtR~~~v~~~~---~~-~~~~~l~~L~~-~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 320 (1385)
|.||...+..... .. ...+++++++. ++...++.+.. . .. .+....|++.+.|.
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~-~~----~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N-FK----DKERTTIAQQVKGK 229 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C-SC----HHHHHHHHHHHTTS
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C-CC----HHHHHHHHHHhcCC
Confidence 7777776544431 11 34678899988 66666665431 1 11 23456688888874
No 183
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.83 E-value=6.7e-05 Score=82.06 Aligned_cols=186 Identities=13% Similarity=0.109 Sum_probs=96.4
Q ss_pred CeeeechhHHHHHHHHHhc---CCc---CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHH
Q 035550 117 AKVYGRETEKKEIVELLLR---DDL---RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIR 190 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~---~~~---~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 190 (1385)
.+++|.++.++++.+++.. ... .+....+.|.|+|++|+|||++|+.+++. .... .+.+.++.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHhh--
Confidence 4578999888887665432 110 01123356789999999999999999873 2222 334444332110
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCC------------cccc---ccccCcccC--CCC
Q 035550 191 LTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNEN------------YNDW---DRLRPPFEA--GAP 253 (1385)
Q Consensus 191 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------------~~~~---~~l~~~l~~--~~~ 253 (1385)
. .......+...+.......+.+|++||+..-. .... ..+...+.. ...
T Consensus 79 -------------~-~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 79 -------------I-GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp -------------S-TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred -------------c-cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 0 01111222233333333567899999994320 0111 112111211 123
Q ss_pred CcEEEEEccchhHhh-hh-C---CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCch-HHHH
Q 035550 254 GSKIIVTARNQGVAA-IM-G---TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPL-AAKT 326 (1385)
Q Consensus 254 gs~ilvTtR~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~ 326 (1385)
+..||.||....... .. . -...+.++..+.++-.+++...+..... . .........+++.+.|.+- .|..
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~--~~~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-T--QSSTFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-C--BTHHHHHHHHHHTCTTCCHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-C--cchhhHHHHHHHHCCCCCHHHHHH
Confidence 456666775543221 11 1 1246778899999999998877532221 1 1112234678888888754 4443
No 184
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.82 E-value=0.00011 Score=83.05 Aligned_cols=173 Identities=13% Similarity=0.051 Sum_probs=100.5
Q ss_pred chhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccc--------------------cCCcEEEEE
Q 035550 122 RETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQD--------------------HFDLKAWTC 181 (1385)
Q Consensus 122 r~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~ 181 (1385)
.++..+.+...+.... -...+.++|+.|+||||+|+.+++...-.. +++ ..++.
T Consensus 7 ~~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~ 80 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLA 80 (334)
T ss_dssp GHHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEEC
T ss_pred hHHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEe
Confidence 3556667777775432 245788999999999999999876311000 111 12222
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhH----cCCCeEEEEEecCCCCCccccccccCcccCCCCCcEE
Q 035550 182 VSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKK----LSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKI 257 (1385)
Q Consensus 182 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 257 (1385)
... .......+++.+.+... ..+++-++|+|++..-+....+.+...+.....++.+
T Consensus 81 ~~~-------------------~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~ 141 (334)
T 1a5t_A 81 PEK-------------------GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWF 141 (334)
T ss_dssp CCT-------------------TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEE
T ss_pred ccc-------------------cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEE
Confidence 110 00112233332222211 1256779999999544434445555555544456777
Q ss_pred EEEccchh-Hhhhh-CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHHHh
Q 035550 258 IVTARNQG-VAAIM-GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLG 328 (1385)
Q Consensus 258 lvTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 328 (1385)
|++|.+.+ +...+ .....+++.+++.++..+.+.+.. . .. .+.+..+++.++|.|..+..+.
T Consensus 142 Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~-~~----~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 142 FLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----T-MS----QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----C-CC----HHHHHHHHHHTTTCHHHHHHTT
T ss_pred EEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----C-CC----HHHHHHHHHHcCCCHHHHHHHh
Confidence 77766543 33322 223578999999999999998775 1 11 2345668999999997665543
No 185
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.79 E-value=2.5e-05 Score=86.69 Aligned_cols=184 Identities=15% Similarity=0.100 Sum_probs=97.7
Q ss_pred CCeeeechhHHHHHHHHHhcCCcC-------CCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCH
Q 035550 116 EAKVYGRETEKKEIVELLLRDDLR-------NDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDV 188 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 188 (1385)
-.+++|.++.++++.+.+...... +....+.+.|+|++|+|||++|+.+++. .... .+.+..+.-.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~~-- 88 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSELV-- 88 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGGC--
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHHH--
Confidence 356899999999998887431000 0122356889999999999999999873 2221 2223222110
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCC-----------CccccccccC---ccc--CCC
Q 035550 189 IRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNE-----------NYNDWDRLRP---PFE--AGA 252 (1385)
Q Consensus 189 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~~~~~~l~~---~l~--~~~ 252 (1385)
... .......+...+......++.+|+|||+..- .......+.. .+. ...
T Consensus 89 ------------~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 89 ------------KKF--IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp ------------CCS--TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred ------------Hhc--cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 000 0011112222233333456789999999321 0000111111 111 122
Q ss_pred CCcEEEEEccchhHhhh-h-C---CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCC-CchHHH
Q 035550 253 PGSKIIVTARNQGVAAI-M-G---TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNG-LPLAAK 325 (1385)
Q Consensus 253 ~gs~ilvTtR~~~v~~~-~-~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~ 325 (1385)
.+..||.||...+.... . . -...+.+++.+.++..+++...+..... .....+ ..+++.+.| .|-.|.
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~----~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVNL----EEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCCH----HHHHHHCTTCCHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCCH----HHHHHHcCCCCHHHHH
Confidence 35677788875533221 1 1 1236889999999999999887643321 122223 346677776 443444
No 186
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.73 E-value=3.9e-05 Score=86.28 Aligned_cols=159 Identities=16% Similarity=0.139 Sum_probs=85.8
Q ss_pred eeeechhHHHHHHHHHhcCC---------cCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCH
Q 035550 118 KVYGRETEKKEIVELLLRDD---------LRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDV 188 (1385)
Q Consensus 118 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 188 (1385)
+++|.++.++++.+++.... .........+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 36788888888776653210 001223456889999999999999988763211111111122333210
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCC---------CccccccccCcccCCCCCcEEEE
Q 035550 189 IRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNE---------NYNDWDRLRPPFEAGAPGSKIIV 259 (1385)
Q Consensus 189 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilv 259 (1385)
.+.... .......+...+... +..+|++|++..- .......+...+.....+..||+
T Consensus 109 ---------~l~~~~--~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 109 ---------DLVGQY--IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp ---------GTCCSS--TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred ---------Hhhhhc--ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 111110 011112222333322 3459999999421 22223444444444445667888
Q ss_pred EccchhH----------hhhhCCCCcccCCCCChhhhHHHhhhhcc
Q 035550 260 TARNQGV----------AAIMGTAPAYQLKKLSNDDCLSVFAQHSL 295 (1385)
Q Consensus 260 TtR~~~v----------~~~~~~~~~~~l~~L~~~~~~~lf~~~a~ 295 (1385)
||..... ...+ ...+++++++.++..+++...+.
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHHH
Confidence 8764322 1211 25788999999999888877653
No 187
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.70 E-value=2.4e-05 Score=80.54 Aligned_cols=45 Identities=27% Similarity=0.390 Sum_probs=37.6
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
..++||+++++++.+.+... ..+.+.|+|++|+||||+|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999998543 2356789999999999999999873
No 188
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.70 E-value=0.0001 Score=83.44 Aligned_cols=174 Identities=17% Similarity=0.150 Sum_probs=97.6
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.+++|+++.++.+..++.... ...++.+.|++|+|||++|+.+++. .. ..++.++.+. .. ....+..+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~-~~-~~~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSD-CK-IDFVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTT-CC-HHHHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEcccc-cC-HHHHHHHH
Confidence 468999999999999996442 2357788899999999999999873 21 1233444333 12 22222222
Q ss_pred HHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCC-ccccccccCcccCCCCCcEEEEEccchh-----Hhhhh
Q 035550 197 LSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNEN-YNDWDRLRPPFEAGAPGSKIIVTARNQG-----VAAIM 270 (1385)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTtR~~~-----v~~~~ 270 (1385)
....... ...+++.++|+||+..-. .+..+.+...+.....+.++|+||.... +...
T Consensus 94 ~~~~~~~----------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR- 156 (324)
T 3u61_B 94 TNFASAA----------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR- 156 (324)
T ss_dssp HHHHHBC----------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH-
T ss_pred HHHHhhc----------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh-
Confidence 2111100 012478899999994433 2233444443333234567888876543 1222
Q ss_pred CCCCcccCCCCChhhhHHH-------hhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHH
Q 035550 271 GTAPAYQLKKLSNDDCLSV-------FAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAA 324 (1385)
Q Consensus 271 ~~~~~~~l~~L~~~~~~~l-------f~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 324 (1385)
...+++++++.++-.++ +...+........+ .+....|++.++|.+-.+
T Consensus 157 --~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 157 --CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD---MKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp --SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTHH
T ss_pred --CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHHH
Confidence 24688999998874332 22222111111111 145566888888876543
No 189
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.65 E-value=0.0029 Score=73.21 Aligned_cols=85 Identities=16% Similarity=-0.044 Sum_probs=37.5
Q ss_pred hcCCCCCCcEEeecCCCCccccCCCCCCccCcceEEeccccCcccccccCCCCCccceeeccccCCCCCCcccCCCCCCc
Q 035550 1157 RLDNNTSLETISIDSCGNLVSFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIGGALPSLEEEDGLPTNL 1236 (1385)
Q Consensus 1157 ~l~~l~~L~~L~L~~n~~l~~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L 1236 (1385)
.+..+.+|+.+.+..+- ...-...+..+..|+.+.+..+ ....-...+.++.+|+.+.+..+ ....-...|..+++|
T Consensus 212 ~f~~~~~l~~i~~~~~~-~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSGV-TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTTC-CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccce-eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 34445556666554331 1112233445556666665543 12222234555556665555422 111112234445555
Q ss_pred ceeEecCC
Q 035550 1237 QSLNIWGN 1244 (1385)
Q Consensus 1237 ~~L~L~~n 1244 (1385)
+.+.+.++
T Consensus 289 ~~i~l~~~ 296 (379)
T 4h09_A 289 TKVVMDNS 296 (379)
T ss_dssp CEEEECCT
T ss_pred cccccccc
Confidence 55555443
No 190
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.65 E-value=0.00061 Score=76.31 Aligned_cols=188 Identities=14% Similarity=0.083 Sum_probs=97.6
Q ss_pred CeeeechhHHHHHHHHHhcC----Cc--CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHH
Q 035550 117 AKVYGRETEKKEIVELLLRD----DL--RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIR 190 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 190 (1385)
.+++|.++.++.|.+.+... +. ......+-|.++|++|+|||+||+++++... .. ..+.+..+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~~--- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLVS--- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSCC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHHh---
Confidence 46889999888888776311 00 0112346788999999999999999997320 11 122333332110
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCc-------ccc----ccccCcccC---CCCCcE
Q 035550 191 LTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENY-------NDW----DRLRPPFEA---GAPGSK 256 (1385)
Q Consensus 191 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-------~~~----~~l~~~l~~---~~~gs~ 256 (1385)
. . .......+...+...-..++.+|++|++..-.. ... ..+...+.. ...+..
T Consensus 85 -----------~-~-~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 85 -----------K-W-LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp -----------S-S-CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred -----------h-h-hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence 0 0 011122222222222235788999999932100 000 111111111 123445
Q ss_pred EEEEccchhHhh-hh--CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCC-chHHHHHh
Q 035550 257 IIVTARNQGVAA-IM--GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGL-PLAAKTLG 328 (1385)
Q Consensus 257 ilvTtR~~~v~~-~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~~ 328 (1385)
||.||....... .+ .-...+.++..+.++-.+++..+......... ......|++.+.|. +-.|..+.
T Consensus 152 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT----EADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC----HHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 665665432211 11 22346788888888888888876533221111 23455688888886 44455443
No 191
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.65 E-value=0.00021 Score=80.38 Aligned_cols=185 Identities=15% Similarity=0.075 Sum_probs=98.4
Q ss_pred CeeeechhHHHHHHHHHhcC---C---cCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHH
Q 035550 117 AKVYGRETEKKEIVELLLRD---D---LRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIR 190 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~---~---~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 190 (1385)
.+++|.++.+++|.+++... . .......+-|.++|++|+|||++|+++++. ....| +.+.++ .
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~~------~ 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------D 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEHH------H
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEchH------H
Confidence 46899999999998877210 0 001123456889999999999999999873 22222 223221 1
Q ss_pred HHHHHHHHhcCCCCCCccCHHH-HHHHHHhHcCCCeEEEEEecCCCCCcc-----------ccccccCccc---CCCCCc
Q 035550 191 LTKSILLSIASDQIVDNHDLNK-LQEELKKKLSPKKFLLVLDDVWNENYN-----------DWDRLRPPFE---AGAPGS 255 (1385)
Q Consensus 191 ~~~~i~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~LlVlDdv~~~~~~-----------~~~~l~~~l~---~~~~gs 255 (1385)
+ ..... ...+. +...+...-..++.+|+||++..-... ....+...+. ....+.
T Consensus 87 l----~~~~~-------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 87 L----VSKWM-------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp H----HTTTG-------GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred H----hhccc-------chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 1 11100 11112 222222222356789999999321100 0111211111 223455
Q ss_pred EEEEEccchhHhh-hh--CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCC-chHHHHH
Q 035550 256 KIIVTARNQGVAA-IM--GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGL-PLAAKTL 327 (1385)
Q Consensus 256 ~ilvTtR~~~v~~-~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~ 327 (1385)
.||.||....... .+ .-...+.++..+.++-.+++..++......... .....|++++.|. +-.|..+
T Consensus 156 ~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~----~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTK----EDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp EEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCH----HHHHHHHHTTTTCCHHHHHHH
T ss_pred EEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCH----HHHHHHHHHcCCCCHHHHHHH
Confidence 6666776543211 11 123467788889999999998876433211122 3445688888874 4444444
No 192
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.64 E-value=3.5e-05 Score=75.08 Aligned_cols=114 Identities=12% Similarity=-0.012 Sum_probs=65.2
Q ss_pred eeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHH
Q 035550 118 KVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILL 197 (1385)
Q Consensus 118 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 197 (1385)
+++|+...++++.+.+..... .. .-|.|+|.+|+|||++|+.+++.... .... .+ +.++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~---~~-~~vll~G~~GtGKt~lA~~i~~~~~~-~~~~-~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE---TD-IAVWLYGAPGTGRMTGARYLHQFGRN-AQGE-FV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT---CC-SCEEEESSTTSSHHHHHHHHHHSSTT-TTSC-CE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC---CC-CCEEEECCCCCCHHHHHHHHHHhCCc-cCCC-EE-EECCCCCcc---------
Confidence 478999999999988754321 12 34679999999999999999874211 1112 23 555543221
Q ss_pred HhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccc
Q 035550 198 SIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARN 263 (1385)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 263 (1385)
... ...+... +.-.|++|++..-.......+...+.......+||.||..
T Consensus 66 ----------~~~---~~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ----------PQL---NDFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ----------SCH---HHHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ----------hhh---hcHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 011 1111111 2346899999554443344444444333445677777764
No 193
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.63 E-value=6.6e-06 Score=84.11 Aligned_cols=119 Identities=16% Similarity=0.075 Sum_probs=56.5
Q ss_pred hhhcCCCCCCcEEeecCC-CCcc----ccCCCCCCccCcceEEeccccCccc----ccccCCCCCccceeeccccCCCCC
Q 035550 1155 AERLDNNTSLETISIDSC-GNLV----SFPEGGLPCVKLRMLAITNCKRLEA----LPKGLHNLTSLQELTIGIGGALPS 1225 (1385)
Q Consensus 1155 ~~~l~~l~~L~~L~L~~n-~~l~----~~~~~~~~l~~L~~L~L~~n~~~~~----lp~~l~~l~~L~~L~L~~n~~~~~ 1225 (1385)
...+...++|++|+|++| .+.. .+...+...++|++|+|++|.+... +...+...++|++|+|++|.+...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 334444555555555555 3211 1122222334555555555553321 222333445566666666554321
Q ss_pred ----CcccCCCCCCcceeEe--cCCcchhhhhhhcCccCCCCCccceEEecccC
Q 035550 1226 ----LEEEDGLPTNLQSLNI--WGNMEIWKSMIERGRGFHRFSSLRYLLISGCD 1273 (1385)
Q Consensus 1226 ----~~~~~~~~~~L~~L~L--~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1273 (1385)
+...+...++|++|+| ++|.+...........+...++|++|+|++|.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 2333344556666666 55654443332223344555667777777653
No 194
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.60 E-value=3e-05 Score=76.45 Aligned_cols=84 Identities=14% Similarity=0.174 Sum_probs=44.6
Q ss_pred cCcceEEeccccCcccccccCCCCCccceeeccccCCCCCCc-ccCCC----CCCcceeEecCCcchhhhhhhcCccCCC
Q 035550 1186 VKLRMLAITNCKRLEALPKGLHNLTSLQELTIGIGGALPSLE-EEDGL----PTNLQSLNIWGNMEIWKSMIERGRGFHR 1260 (1385)
Q Consensus 1186 ~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~----~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 1260 (1385)
.+|++|++++|.+...--..+.+|++|++|+|++|..++..- ..+.. .++|++|+|++|..++..... .+.+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~---~L~~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII---ALHH 137 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH---HGGG
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH---HHhc
Confidence 356777777776554444455667777777777776444311 11112 235666666666543332221 2445
Q ss_pred CCccceEEeccc
Q 035550 1261 FSSLRYLLISGC 1272 (1385)
Q Consensus 1261 l~~L~~L~l~~~ 1272 (1385)
+++|+.|+|++|
T Consensus 138 ~~~L~~L~L~~c 149 (176)
T 3e4g_A 138 FRNLKYLFLSDL 149 (176)
T ss_dssp CTTCCEEEEESC
T ss_pred CCCCCEEECCCC
Confidence 566666666665
No 195
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.57 E-value=0.00017 Score=82.33 Aligned_cols=187 Identities=11% Similarity=0.036 Sum_probs=97.4
Q ss_pred CeeeechhHHHHHHHHHhcC----Cc--CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHH
Q 035550 117 AKVYGRETEKKEIVELLLRD----DL--RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIR 190 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 190 (1385)
.+++|.++.++++.+++... +. ......+.|.|+|++|+|||++|+.+++. ... ..+.+.++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~---~~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGA---TFFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTC---EEEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCC---eEEEEehHHhhc---
Confidence 45899999999998877421 00 00122457889999999999999999873 221 123444432111
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCc-----------cccccccCcccC----CCCCc
Q 035550 191 LTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENY-----------NDWDRLRPPFEA----GAPGS 255 (1385)
Q Consensus 191 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-----------~~~~~l~~~l~~----~~~gs 255 (1385)
.. .......+...+...-..++.+|+||++..-.. .....+...+.. ...+.
T Consensus 156 -----------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 156 -----------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp -----------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred -----------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 00 000111111222222235678999999821100 001122222211 12344
Q ss_pred EEEEEccchh-Hhhhh--CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCC-CchHHHHHh
Q 035550 256 KIIVTARNQG-VAAIM--GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNG-LPLAAKTLG 328 (1385)
Q Consensus 256 ~ilvTtR~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~~ 328 (1385)
.||.||.... +...+ .-...+.+...+.++..+++...+........ .+....|++.+.| .+-+|..+.
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS----EEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 5665665432 21111 11236778888888888888776532211111 2345668888888 455555543
No 196
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.56 E-value=0.00016 Score=82.32 Aligned_cols=182 Identities=15% Similarity=0.164 Sum_probs=98.9
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCC-cEEEEEeCCCCCHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFD-LKAWTCVSDDFDVIRLTKSI 195 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 195 (1385)
.+++|.+..++.+..++.... .+.+.++|+.|+||||+|+.+++... ...+. .+.-++.+.......+ ++.
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~------~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~i-r~~ 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK------LPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGIDVV-RNQ 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHHHH-HTH
T ss_pred HHhcCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHHHH-HHH
Confidence 347899888888888885432 22388999999999999999987311 11111 1122222221111111 111
Q ss_pred HHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchh-Hhhhh-CCC
Q 035550 196 LLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQG-VAAIM-GTA 273 (1385)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~-~~~ 273 (1385)
+..+.... ....+.+-++|+|++..-.....+.+...+.......++|++|.... +...+ ...
T Consensus 97 i~~~~~~~---------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 97 IKDFASTR---------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp HHHHHHBC---------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhhc---------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhc
Confidence 11111000 00123467899999954333344444444433344567777665432 21111 122
Q ss_pred CcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHH
Q 035550 274 PAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAK 325 (1385)
Q Consensus 274 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 325 (1385)
..+++.+++.++..+.+.+.+..... .-. .+..+.|++.++|.+--+.
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~-~i~---~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEKL-KLS---PNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTC-CBC---HHHHHHHHHHHTTCHHHHH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHH
Confidence 46889999999988888765522111 111 2456678888999876433
No 197
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.56 E-value=4.8e-05 Score=81.45 Aligned_cols=79 Identities=24% Similarity=0.268 Sum_probs=51.4
Q ss_pred ccCCceeEEEEcCccccccc---ccccCCccccEEecccccccccchhhhccC--CccEEecCCCcchhhhh-------h
Q 035550 527 FKLQRLRVFSLRGYYISELP---DSFGDLRYLRYLNLSLTEIRTLPESVNKLY--NLHTLLLEGCRRLKKLC-------A 594 (1385)
Q Consensus 527 ~~l~~Lr~L~L~~~~i~~lp---~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~--~L~~L~L~~~~~l~~lp-------~ 594 (1385)
.++++|+.|+|++|.|+.++ ..+..+.+|++|+|++|+|+.+ ..+..+. +|++|+|++|.....+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 45677778888877776543 5556777777788877777765 3344444 77777777765443333 2
Q ss_pred cccccCCCCeee
Q 035550 595 DMGNLIKLHHLD 606 (1385)
Q Consensus 595 ~i~~L~~L~~L~ 606 (1385)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 356677777765
No 198
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.56 E-value=0.00028 Score=79.69 Aligned_cols=154 Identities=14% Similarity=0.100 Sum_probs=84.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSP 223 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 223 (1385)
...+.|+|++|+||||||+.+++. ....-..++++++ ..+...+...+... ....... .+ .
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~------~~~~~~~~~~~~~~------~~~~~~~----~~-~ 97 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSA------DDFAQAMVEHLKKG------TINEFRN----MY-K 97 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEH------HHHHHHHHHHHHHT------CHHHHHH----HH-H
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEH------HHHHHHHHHHHHcC------cHHHHHH----Hh-c
Confidence 456889999999999999999973 2111123445543 23344444433221 1122222 22 2
Q ss_pred CeEEEEEecCCCCCc--cccccccCcccC-CCCCcEEEEEccch---------hHhhhhCCCCcccCCCCChhhhHHHhh
Q 035550 224 KKFLLVLDDVWNENY--NDWDRLRPPFEA-GAPGSKIIVTARNQ---------GVAAIMGTAPAYQLKKLSNDDCLSVFA 291 (1385)
Q Consensus 224 ~~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 291 (1385)
+.-+|++||+..-.. ...+.+...+.. ...|.+||+||... .+...+.....+++++ +.++..+++.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHH
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHH
Confidence 366999999944221 111223222221 12455788877532 1222233335688999 9999999998
Q ss_pred hhccCcCCCCCchhHHHHHHHHHHhcCCCch
Q 035550 292 QHSLGTRDFSSNKSLEEIGKKIVIKCNGLPL 322 (1385)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL 322 (1385)
..+.......+ .+....|++.+ |..-
T Consensus 177 ~~~~~~~~~l~----~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 177 EKLKEFNLELR----KEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHHTTCCCC----HHHHHHHHHHC-SSHH
T ss_pred HHHHhcCCCCC----HHHHHHHHHhC-CCHH
Confidence 87642221111 24455677777 7654
No 199
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.55 E-value=0.0044 Score=71.69 Aligned_cols=123 Identities=12% Similarity=0.020 Sum_probs=73.3
Q ss_pred ccceeEEcccCcchhhhhhcCCCCCCcEEeecCCCCcccc-CCCCCCccCcceEEeccccCcccc-cccCCCCCccceee
Q 035550 1139 SLKSLVVWSCSKLESIAERLDNNTSLETISIDSCGNLVSF-PEGGLPCVKLRMLAITNCKRLEAL-PKGLHNLTSLQELT 1216 (1385)
Q Consensus 1139 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~~-~~~~~~l~~L~~L~L~~n~~~~~l-p~~l~~l~~L~~L~ 1216 (1385)
.|+.+.+..+ ........+.++.+|+.+.+..+ +..+ ...+..+.+|+.+.+..+ +..+ ...|.+|++|+.+.
T Consensus 218 ~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 218 NLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp SCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEE
T ss_pred ccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc--ceecccccccccccccccc
Confidence 4555544332 22223445667778888877654 3333 334556777888887654 3333 34577888888888
Q ss_pred ccccCCCCCCcccCCCCCCcceeEecCCcchhhhhhhcCccCCCCCccceEEecc
Q 035550 1217 IGIGGALPSLEEEDGLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRYLLISG 1271 (1385)
Q Consensus 1217 L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~ 1271 (1385)
+.++.+...-...|..+.+|+.+.|..+- .......|.+|++|+.+.+..
T Consensus 293 l~~~~i~~I~~~aF~~c~~L~~i~lp~~l-----~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 293 MDNSAIETLEPRVFMDCVKLSSVTLPTAL-----KTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTTC-----CEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccceehhhhhcCCCCCCEEEcCccc-----cEEHHHHhhCCCCCCEEEECC
Confidence 87665444444566677778777775441 111224677777777777754
No 200
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.53 E-value=0.0002 Score=81.49 Aligned_cols=186 Identities=15% Similarity=0.065 Sum_probs=96.2
Q ss_pred CeeeechhHHHHHHHHHhcC----Cc--CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHH
Q 035550 117 AKVYGRETEKKEIVELLLRD----DL--RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIR 190 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 190 (1385)
.+++|.++.+++|.+.+... .. ......+-|.|+|++|+|||++|+++++. .... .+.+..+ .
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~---~~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCE---EEEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCC---EEEeeHH------H
Confidence 45899999999998876311 00 01122345789999999999999999983 2222 2223221 1
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCcc-----------ccccccCccc---CCCCCcE
Q 035550 191 LTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYN-----------DWDRLRPPFE---AGAPGSK 256 (1385)
Q Consensus 191 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~-----------~~~~l~~~l~---~~~~gs~ 256 (1385)
+ ..... ......+...+...-..++.+|+||++..-... ....+...+. ....+..
T Consensus 120 l----~~~~~------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 120 L----VSKWM------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp H----HSCC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred H----hhhhc------chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 1 11110 011122222222222357889999999431110 0111222121 1123455
Q ss_pred EEEEccchhHhh-hh--CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCC-chHHHHH
Q 035550 257 IIVTARNQGVAA-IM--GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGL-PLAAKTL 327 (1385)
Q Consensus 257 ilvTtR~~~v~~-~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~ 327 (1385)
||.||....... .+ .-...+.+...+.++-.+++..+......... ......|++.+.|. +-.|..+
T Consensus 190 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp EEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 666665442111 11 22356778888999988898877643221111 23345688888884 4444444
No 201
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.53 E-value=4.7e-05 Score=79.34 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCC
Q 035550 123 ETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASD 202 (1385)
Q Consensus 123 ~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~ 202 (1385)
...++.+.+++..... ....+.+.|+|++|+|||+||+.+++. .......++|+.+. .+...+......
T Consensus 35 ~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~- 103 (202)
T 2w58_A 35 IKAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQD- 103 (202)
T ss_dssp HHHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhcc-
Confidence 3445555666644321 111267889999999999999999973 33333456666543 344444332211
Q ss_pred CCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccccccc--cC-cccCC-CCCcEEEEEccch
Q 035550 203 QIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRL--RP-PFEAG-APGSKIIVTARNQ 264 (1385)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l--~~-~l~~~-~~gs~ilvTtR~~ 264 (1385)
.........+.+ .-+|||||++......|..- .. .+... ..+.++|+||...
T Consensus 104 -----~~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 104 -----QTMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp -----CCCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred -----chHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 112233333332 23999999966544455432 21 12111 2455788888743
No 202
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.49 E-value=7.5e-05 Score=76.06 Aligned_cols=122 Identities=17% Similarity=0.142 Sum_probs=65.2
Q ss_pred chhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcC
Q 035550 122 RETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIAS 201 (1385)
Q Consensus 122 r~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 201 (1385)
.++.++.+.+++..-.. .....+.|+|++|+||||||+.+++.......+ .+++++ ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcC
Confidence 44555555555543321 234689999999999999999998742212222 233333 34445544444332
Q ss_pred CCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccccc--cccCcccCC-CCCcEEEEEccch
Q 035550 202 DQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWD--RLRPPFEAG-APGSKIIVTARNQ 264 (1385)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTtR~~ 264 (1385)
... . ...+.+. +.-+|||||++....+.|. .+...+... ..|..||+||...
T Consensus 89 ~~~----~--~~~~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 89 GKD----T--KFLKTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp TCC----S--HHHHHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred chH----H--HHHHHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 221 1 2222222 4568999999643333343 222222211 2467888888753
No 203
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.44 E-value=0.00047 Score=76.76 Aligned_cols=183 Identities=11% Similarity=0.060 Sum_probs=95.0
Q ss_pred CeeeechhHHHHHHHHHhcCCc------CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDL------RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIR 190 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 190 (1385)
.+++|.++.++.+.+++..... .-....+.+.|+|++|+||||+|+.+++. .... .+.+.++.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHhh---
Confidence 4589999999999887743100 00012357889999999999999999873 2211 23344332111
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHH-HHHHhHcCCCeEEEEEecCCCCCccc-----------cccccCcc---cC--CCC
Q 035550 191 LTKSILLSIASDQIVDNHDLNKLQ-EELKKKLSPKKFLLVLDDVWNENYND-----------WDRLRPPF---EA--GAP 253 (1385)
Q Consensus 191 ~~~~i~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~~~~~~-----------~~~l~~~l---~~--~~~ 253 (1385)
.. ........ ..+......++.+|++|++..-.... ...+...+ +. .+.
T Consensus 93 -----------~~---~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 158 (297)
T 3b9p_A 93 -----------KY---VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD 158 (297)
T ss_dssp -----------SS---CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------
T ss_pred -----------cc---cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 00 01112222 22222223567899999993321000 00111111 11 113
Q ss_pred CcEEEEEccchh-----HhhhhCCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCch-HHHHH
Q 035550 254 GSKIIVTARNQG-----VAAIMGTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPL-AAKTL 327 (1385)
Q Consensus 254 gs~ilvTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 327 (1385)
+..||.||.... +...+ ...+.+...+.++...++...+........ .+....|++.+.|.+- ++..+
T Consensus 159 ~v~vi~~tn~~~~l~~~l~~R~--~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 159 RIVVLAATNRPQELDEAALRRF--TKRVYVSLPDEQTRELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp CEEEEEEESCGGGBCHHHHHHC--CEEEECCCCCHHHHHHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred cEEEEeecCChhhCCHHHHhhC--CeEEEeCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 455666776542 22222 245677777788877777766532211111 2345668888888775 44443
No 204
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.43 E-value=2e-05 Score=84.35 Aligned_cols=67 Identities=12% Similarity=0.159 Sum_probs=42.7
Q ss_pred CCCCCCcEEeecCCCCcc--ccCCCCCCccCcceEEeccccCcccccccCCCCC--ccceeeccccCCCCCCc
Q 035550 1159 DNNTSLETISIDSCGNLV--SFPEGGLPCVKLRMLAITNCKRLEALPKGLHNLT--SLQELTIGIGGALPSLE 1227 (1385)
Q Consensus 1159 ~~l~~L~~L~L~~n~~l~--~~~~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~--~L~~L~L~~n~~~~~~~ 1227 (1385)
.++++|++|+|++|.+.+ .+|..+..+++|+.|+|++|.+.+. ..+..++ +|++|+|++|++.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 567888999999888555 3444455677888888888875443 1222233 66666776666554443
No 205
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.42 E-value=0.00063 Score=78.83 Aligned_cols=187 Identities=11% Similarity=0.035 Sum_probs=94.7
Q ss_pred CCeeeechhHHHHHHHHHhcCCc------CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHH
Q 035550 116 EAKVYGRETEKKEIVELLLRDDL------RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVI 189 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 189 (1385)
-.+++|.+..++.+..++..... ......+-|.|+|.+|+|||++|+.+++. ... ..+.+.++.-.+.
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~---~~~~v~~~~l~~~- 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNA---TFFNISAASLTSK- 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTC---EEEEECSCCC----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcC---cEEEeeHHHhhcc-
Confidence 35689999999999988732100 00012357889999999999999999873 221 1233333221110
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCc-----------cccccccCccc----CCCCC
Q 035550 190 RLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENY-----------NDWDRLRPPFE----AGAPG 254 (1385)
Q Consensus 190 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-----------~~~~~l~~~l~----~~~~g 254 (1385)
. .......+...+...-...+.+|+||++..-.. .....+...+. .....
T Consensus 188 ---------~------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 252 (389)
T 3vfd_A 188 ---------Y------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDR 252 (389)
T ss_dssp -------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----C
T ss_pred ---------c------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCC
Confidence 0 000111122222222234567999999932100 00011111111 01223
Q ss_pred cEEEEEccchhHh-hhh-C-CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCch-HHHHH
Q 035550 255 SKIIVTARNQGVA-AIM-G-TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPL-AAKTL 327 (1385)
Q Consensus 255 s~ilvTtR~~~v~-~~~-~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 327 (1385)
..||.||...... ..+ . -...+.+...+.++..+++...+........ .+....|++.+.|..- +|..+
T Consensus 253 v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 253 VLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT----QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 4556566543221 111 1 1235778888999998888877643221111 2345668888888544 44444
No 206
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.41 E-value=0.00098 Score=78.89 Aligned_cols=145 Identities=18% Similarity=0.252 Sum_probs=78.6
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccC------Cc-EEEEEeCCCCCHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF------DL-KAWTCVSDDFDVI 189 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f------~~-~~wv~~~~~~~~~ 189 (1385)
..+|||++++++++..+.... ..-+.++|.+|+|||++|+.++.. ....+ +. ++.+.++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~------ 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG------ 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCC------
Confidence 358999999999999996532 234579999999999999999873 21111 11 2222222
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchhHhhh
Q 035550 190 RLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQGVAAI 269 (1385)
Q Consensus 190 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 269 (1385)
....+. .......+...+. ..++.+|++|. ..+....+...+.. ...++|.+|...+....
T Consensus 246 -------~~~~g~---~e~~~~~~~~~~~---~~~~~iLfiD~----~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~ 306 (468)
T 3pxg_A 246 -------TKYRGE---FEDRLKKVMDEIR---QAGNIILFIDA----AIDASNILKPSLAR--GELQCIGATTLDEYRKY 306 (468)
T ss_dssp -----------------CTTHHHHHHHHH---TCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHH
T ss_pred -------ccccch---HHHHHHHHHHHHH---hcCCeEEEEeC----chhHHHHHHHhhcC--CCEEEEecCCHHHHHHH
Confidence 000000 1112223333332 35678899991 11233334444432 23466666655442111
Q ss_pred h-------CCCCcccCCCCChhhhHHHhhhhc
Q 035550 270 M-------GTAPAYQLKKLSNDDCLSVFAQHS 294 (1385)
Q Consensus 270 ~-------~~~~~~~l~~L~~~~~~~lf~~~a 294 (1385)
. ..-..+.+++.+.++..+++...+
T Consensus 307 ~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 307 IEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hhcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 1 112368899999999999998654
No 207
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.39 E-value=0.0014 Score=77.01 Aligned_cols=188 Identities=14% Similarity=0.119 Sum_probs=97.4
Q ss_pred CCeeeechhHHHHHHHHHhcC----Cc--CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHH
Q 035550 116 EAKVYGRETEKKEIVELLLRD----DL--RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVI 189 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 189 (1385)
-.+++|.++.++.|..++... .. ......+.|.++|++|+|||+||+.+++. . ...-++.++...
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~~--- 203 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSSD--- 203 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC----
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHHH---
Confidence 356899999999998876311 00 01123467889999999999999999973 2 111233333221
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCc-------cc----cccccCcccC---CCCCc
Q 035550 190 RLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENY-------ND----WDRLRPPFEA---GAPGS 255 (1385)
Q Consensus 190 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-------~~----~~~l~~~l~~---~~~gs 255 (1385)
+.. ...+. .......+.... -..++.+|+||++..-.. .. ...+...+.. ...+.
T Consensus 204 -l~~----~~~g~---~~~~~~~~f~~a---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v 272 (444)
T 2zan_A 204 -LVS----KWLGE---SEKLVKNLFQLA---RENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 272 (444)
T ss_dssp ----------------CCCTHHHHHHHH---HHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSC
T ss_pred -HHh----hhcch---HHHHHHHHHHHH---HHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCE
Confidence 111 11111 112222222222 235678999999943210 00 1112222221 23455
Q ss_pred EEEEEccchhHhh-hh--CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCC-chHHHHH
Q 035550 256 KIIVTARNQGVAA-IM--GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGL-PLAAKTL 327 (1385)
Q Consensus 256 ~ilvTtR~~~v~~-~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~ 327 (1385)
.||.||....... .+ .-...+.+...+.++...++..+......... ......|++.+.|. +-.|..+
T Consensus 273 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT----EADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp EEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 6776776543211 11 12246778888888888888877533221111 13345688888884 4444444
No 208
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.39 E-value=0.00033 Score=77.31 Aligned_cols=149 Identities=7% Similarity=-0.013 Sum_probs=89.1
Q ss_pred echhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCcc-ccccCCcEEEEEeCC-CCCHHHHHHHHHHH
Q 035550 121 GRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQ-VQDHFDLKAWTCVSD-DFDVIRLTKSILLS 198 (1385)
Q Consensus 121 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~ 198 (1385)
|-++.++.+...+... ..+...++|++|+||||+|+.+++... .........++..+. ...... .+++++.
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHH
Confidence 4456667777777443 257888999999999999999986210 111122234443332 222222 2233333
Q ss_pred hcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccch-hHhhhhCCCCccc
Q 035550 199 IASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQ-GVAAIMGTAPAYQ 277 (1385)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~ 277 (1385)
+.... ..+++-++|+|++..-+....+.+...+......+.+|++|.++ .+...+... .++
T Consensus 74 ~~~~p-----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~ 135 (305)
T 2gno_A 74 LNYSP-----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFR 135 (305)
T ss_dssp HTSCC-----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEE
T ss_pred Hhhcc-----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEe
Confidence 32211 12456789999996555455666666665555667777766443 444444444 899
Q ss_pred CCCCChhhhHHHhhhhc
Q 035550 278 LKKLSNDDCLSVFAQHS 294 (1385)
Q Consensus 278 l~~L~~~~~~~lf~~~a 294 (1385)
+.++++++..+.+.+.+
T Consensus 136 f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 136 VVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EECCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999887765
No 209
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.38 E-value=2.4e-05 Score=79.88 Aligned_cols=110 Identities=19% Similarity=0.047 Sum_probs=79.6
Q ss_pred cccceeEEccc-Ccch----hhhhhcCCCCCCcEEeecCCCCccc----cCCCCCCccCcceEEeccccCccc----ccc
Q 035550 1138 SSLKSLVVWSC-SKLE----SIAERLDNNTSLETISIDSCGNLVS----FPEGGLPCVKLRMLAITNCKRLEA----LPK 1204 (1385)
Q Consensus 1138 ~~L~~L~L~~~-~~~~----~~~~~l~~l~~L~~L~L~~n~~l~~----~~~~~~~l~~L~~L~L~~n~~~~~----lp~ 1204 (1385)
++|++|+|++| .+.. .+...+...++|++|+|++|.+... +...+...++|++|+|++|.+... +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 57899999988 6554 3456677788999999999985421 223333456899999999986543 455
Q ss_pred cCCCCCccceeec--cccCCCCC----CcccCCCCCCcceeEecCCcch
Q 035550 1205 GLHNLTSLQELTI--GIGGALPS----LEEEDGLPTNLQSLNIWGNMEI 1247 (1385)
Q Consensus 1205 ~l~~l~~L~~L~L--~~n~~~~~----~~~~~~~~~~L~~L~L~~n~~~ 1247 (1385)
.+...++|++|+| ++|.+... +...+...++|++|+|++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 6778889999999 77875432 3334445689999999999854
No 210
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.25 E-value=0.00022 Score=91.77 Aligned_cols=45 Identities=29% Similarity=0.488 Sum_probs=37.4
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
..++||+++++++++.+.... ..-+.++|.+|+||||+|+.+++.
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999996532 234679999999999999999873
No 211
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.20 E-value=0.0015 Score=72.39 Aligned_cols=181 Identities=15% Similarity=0.143 Sum_probs=95.0
Q ss_pred CeeeechhHHHHHHHHHhcCCc-------CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDL-------RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVI 189 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 189 (1385)
.+++|.++.++++.+++...-. -+-...+.|.|+|++|+|||++|+.+++. .... ++.+. ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----hH
Confidence 4588999998888887643100 01123457889999999999999999973 2222 22221 22
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCc----------cc----cccccCcccC--CCC
Q 035550 190 RLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENY----------ND----WDRLRPPFEA--GAP 253 (1385)
Q Consensus 190 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------~~----~~~l~~~l~~--~~~ 253 (1385)
.+.. ...+.. .. .+...+.......+.+|++|++..-.. .. ...+...+.. ...
T Consensus 84 ~l~~----~~~g~~---~~---~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 84 ELLT----MWFGES---EA---NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHHH----HHHTTC---TT---HHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHHh----hhcCch---HH---HHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 2222 222211 11 122233333345678999999932000 00 1122222211 123
Q ss_pred CcEEEEEccchhHhh-h-hC---CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchH
Q 035550 254 GSKIIVTARNQGVAA-I-MG---TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLA 323 (1385)
Q Consensus 254 gs~ilvTtR~~~v~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 323 (1385)
+..||.||...+... . .. -...+.++..+.++-.+++......... .....+. .+++.+.|.|=+
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~~~----~la~~~~g~sg~ 223 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVDLE----FLAKMTNGFSGA 223 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCCHH----HHHHTCSSCCHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-CccchHH----HHHHHcCCCCHH
Confidence 456777776553221 1 11 1246788888888888888776532211 1122233 355667776643
No 212
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.18 E-value=0.00013 Score=70.62 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=33.6
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
-.++|++..++++.+.+..... ...-|.|+|.+|+|||++|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHh
Confidence 3578999999998888754211 1134779999999999999999874
No 213
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.06 E-value=0.002 Score=72.66 Aligned_cols=176 Identities=16% Similarity=0.198 Sum_probs=89.8
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
..++|.+..++.+...+..... .+.....+.++|++|+||||||+.+++. ....| ...-....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~----~~~sg~~~---------- 87 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNI----HVTSGPVL---------- 87 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCE----EEEETTTC----------
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE----EEEechHh----------
Confidence 3578888877777666643210 1123457899999999999999999973 22111 11111110
Q ss_pred HHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccccccccCcccCC--------C----------CCcEEE
Q 035550 197 LSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPFEAG--------A----------PGSKII 258 (1385)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~--------~----------~gs~il 258 (1385)
....++...+ ..+. ++-++++|++..-.....+.+...+... + ....++
T Consensus 88 -----------~~~~~l~~~~-~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 88 -----------VKQGDMAAIL-TSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp -----------CSHHHHHHHH-HHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred -----------cCHHHHHHHH-HHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 0111111111 1222 3346777887432211222221111000 0 011222
Q ss_pred -EEccchhHhhhhCC--CCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCchHHHH
Q 035550 259 -VTARNQGVAAIMGT--APAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKT 326 (1385)
Q Consensus 259 -vTtR~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 326 (1385)
.|++...+...+.. ...+.+++.+.++-.+++.+.+..... ... .+.+..|+++++|.|-.+..
T Consensus 155 ~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~-~~~---~~~~~~ia~~~~G~~R~a~~ 221 (334)
T 1in4_A 155 GATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV-EIE---DAAAEMIAKRSRGTPRIAIR 221 (334)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-CBC---HHHHHHHHHTSTTCHHHHHH
T ss_pred EecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC-CcC---HHHHHHHHHhcCCChHHHHH
Confidence 34443333222211 124789999999999999887632111 111 35577899999999965543
No 214
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.05 E-value=0.00064 Score=74.14 Aligned_cols=46 Identities=22% Similarity=0.173 Sum_probs=33.7
Q ss_pred eeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 118 KVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 118 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
.++|++..+.++.+.+..... ....|.|+|.+|+|||++|+.+++.
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred cceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 478999999988877754221 1245779999999999999999874
No 215
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.94 E-value=0.00027 Score=68.67 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
...++|+|..|+|||||++.++..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 216
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.94 E-value=0.0016 Score=73.08 Aligned_cols=65 Identities=17% Similarity=0.288 Sum_probs=43.1
Q ss_pred eeeechhHHHHHHHHHhcCCc---CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCC
Q 035550 118 KVYGRETEKKEIVELLLRDDL---RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD 184 (1385)
Q Consensus 118 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 184 (1385)
.++|.+..++.+...+..... ........+.++|++|+|||++|+.+++. ....-...+.+.++.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTE 85 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGG
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeeccc
Confidence 467999998888888754311 01122357899999999999999999873 222222345555554
No 217
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.93 E-value=0.0018 Score=82.17 Aligned_cols=147 Identities=18% Similarity=0.225 Sum_probs=79.3
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCc---ccccc-CCcEE-EEEeCCCCCHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDK---QVQDH-FDLKA-WTCVSDDFDVIRL 191 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~---~~~~~-f~~~~-wv~~~~~~~~~~~ 191 (1385)
..+|||+++++++...|.... ..-+.++|++|+|||++|+.+++.. .+... ....+ .+..
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 358999999999999996532 2346799999999999999998731 00000 11111 1111
Q ss_pred HHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchhHhhhhC
Q 035550 192 TKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQGVAAIMG 271 (1385)
Q Consensus 192 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~ 271 (1385)
.....+. .......+ +...-..++.+|++|.- .+....+...+.. ...++|.||...+......
T Consensus 245 ----g~~~~G~---~e~~l~~~---~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~ 308 (758)
T 3pxi_A 245 ----GTKYRGE---FEDRLKKV---MDEIRQAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRKYIE 308 (758)
T ss_dssp ---------------CTTHHHH---HHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHT
T ss_pred ----cccccch---HHHHHHHH---HHHHHhcCCEEEEEcCc----hhHHHHHHHHHhc--CCEEEEeCCChHHHHHHhh
Confidence 0000000 11122233 33333467889999921 1222334443332 2356776666544211111
Q ss_pred -------CCCcccCCCCChhhhHHHhhhhc
Q 035550 272 -------TAPAYQLKKLSNDDCLSVFAQHS 294 (1385)
Q Consensus 272 -------~~~~~~l~~L~~~~~~~lf~~~a 294 (1385)
.-..+.+++.+.++..+++...+
T Consensus 309 ~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred ccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11468899999999999998654
No 218
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.89 E-value=0.0036 Score=79.63 Aligned_cols=154 Identities=18% Similarity=0.235 Sum_probs=83.4
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCcc---cc-ccCCcEEEE-EeCCCCCHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQ---VQ-DHFDLKAWT-CVSDDFDVIRL 191 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~---~~-~~f~~~~wv-~~~~~~~~~~~ 191 (1385)
..++||+++++++++.|.... ..-+.|+|.+|+||||+|+.+++... +. ......+|. ..+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 458999999999999995432 24567999999999999999986311 00 012233331 11110
Q ss_pred HHHHHHHhcCCCCCCccCHHH-HHHHHHhHcCCCeEEEEEecCCCCC--------ccc-cccccCcccCCCCCcEEEEEc
Q 035550 192 TKSILLSIASDQIVDNHDLNK-LQEELKKKLSPKKFLLVLDDVWNEN--------YND-WDRLRPPFEAGAPGSKIIVTA 261 (1385)
Q Consensus 192 ~~~i~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~LlVlDdv~~~~--------~~~-~~~l~~~l~~~~~gs~ilvTt 261 (1385)
+.+.. .....+. +...+...-+.++.+|++||+..-. ..+ ...+...+.. .+.++|.+|
T Consensus 254 -------~~~~~--~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~I~at 322 (758)
T 1r6b_X 254 -------LAGTK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGST 322 (758)
T ss_dssp --------CCCC--CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEEEEEE
T ss_pred -------hcccc--ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEEEEEe
Confidence 00011 1112222 2233333334467899999994320 111 1223333322 345666666
Q ss_pred cchhHhhhhC-------CCCcccCCCCChhhhHHHhhhh
Q 035550 262 RNQGVAAIMG-------TAPAYQLKKLSNDDCLSVFAQH 293 (1385)
Q Consensus 262 R~~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~ 293 (1385)
...+...... .-..+.+.+.+.++..+++...
T Consensus 323 ~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l 361 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_dssp CHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHH
T ss_pred CchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHH
Confidence 6544322111 1125778888888888877654
No 219
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.0024 Score=71.82 Aligned_cols=178 Identities=17% Similarity=0.149 Sum_probs=94.5
Q ss_pred CeeeechhHHHHHHHHHhcC----Cc---CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHH
Q 035550 117 AKVYGRETEKKEIVELLLRD----DL---RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVI 189 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~----~~---~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 189 (1385)
.++.|.++.+++|.+.+.-+ +. -+-...+-|.++|++|.|||.||+++++. ....| +.+..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhhc--
Confidence 45778988888887765321 00 01223456889999999999999999983 33232 3343332111
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCc--------cc------cccccCcccC--CCC
Q 035550 190 RLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENY--------ND------WDRLRPPFEA--GAP 253 (1385)
Q Consensus 190 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--------~~------~~~l~~~l~~--~~~ 253 (1385)
. . .......+.+.+...-...+++|++|++..--. .. ...+...+.. ...
T Consensus 221 ------------k-~-vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 221 ------------K-Y-IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp ------------S-S-TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred ------------c-c-cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 0 0 011112222222222245789999999832100 00 0111212221 223
Q ss_pred CcEEEEEccchhHhhhh-----CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCC
Q 035550 254 GSKIIVTARNQGVAAIM-----GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGL 320 (1385)
Q Consensus 254 gs~ilvTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 320 (1385)
+..||.||...+..+.. .-+..++++.-+.++-.++|+.+.-+.. .....++. .|++++.|.
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-l~~dvdl~----~lA~~t~G~ 353 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMN-LTRGINLR----KVAEKMNGC 353 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB-CCSSCCHH----HHHHHCCSC
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC-CCccCCHH----HHHHHCCCC
Confidence 44566677655432211 1246788888888888888877653322 11222333 467777774
No 220
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.87 E-value=0.0017 Score=76.62 Aligned_cols=184 Identities=11% Similarity=0.093 Sum_probs=97.1
Q ss_pred CeeeechhHHHHHHHHHhcCCc-------CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDL-------RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVI 189 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 189 (1385)
.+++|.+..++++.+++...-. -+....+-|.|+|++|+|||++|+.+++. .... .+.++++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~---fv~vn~~~----- 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPE----- 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSE---EEEEEHHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCC---EEEEEchH-----
Confidence 4589999999999887753200 00122346889999999999999999873 2222 23333211
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCc------c-----ccccccCcccC--CCCCcE
Q 035550 190 RLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENY------N-----DWDRLRPPFEA--GAPGSK 256 (1385)
Q Consensus 190 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~------~-----~~~~l~~~l~~--~~~gs~ 256 (1385)
+...+ .......+...+.....+++.+|+||++..-.. . ....+...+.. ...+.+
T Consensus 274 -----l~~~~------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 274 -----IMSKL------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp -----HHTSC------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred -----hhhhh------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 11111 011122233344444456788999999821000 0 01112222221 123445
Q ss_pred EEEEccchhH-hhhhC----CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCC-chHHHH
Q 035550 257 IIVTARNQGV-AAIMG----TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGL-PLAAKT 326 (1385)
Q Consensus 257 ilvTtR~~~v-~~~~~----~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~ 326 (1385)
||.||..... ...+. -...+.+...+.++-.+++..++..... .....+ .++++.+.|. +-.+..
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~l----~~la~~t~g~s~~dL~~ 413 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDL----EQVANETHGHVGADLAA 413 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCCH----HHHHHTCTTCCHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhhH----HHHHHHccCCcHHHHHH
Confidence 6666665432 22221 1235788899999999999877633221 112223 3366667664 433443
No 221
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.86 E-value=0.0016 Score=77.03 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=35.3
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
.+++|.++.++++..++..-.. +....+-+.++|++|+|||++|+.+++.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKS-KKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHT-TCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHh-CCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 5689999988866554422111 1122356889999999999999999873
No 222
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.86 E-value=0.0015 Score=72.42 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=36.0
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..++|+...+.++.+.+..... ....|.|+|.+|+|||++|+.+++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHH
Confidence 3578999999999888765321 123577999999999999999987
No 223
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.0012 Score=75.74 Aligned_cols=50 Identities=30% Similarity=0.238 Sum_probs=37.1
Q ss_pred CeeeechhHHHHHHHHHhcCCc-------CCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 117 AKVYGRETEKKEIVELLLRDDL-------RNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.++.|.++.+++|.+.+.-.-. -+-...+-|.++|++|.|||++|+++++
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4678999999888776632100 0223346688999999999999999998
No 224
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.77 E-value=0.0042 Score=69.54 Aligned_cols=50 Identities=24% Similarity=0.312 Sum_probs=36.5
Q ss_pred CeeeechhHHHHHHHHHhcCCcC--------CCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 117 AKVYGRETEKKEIVELLLRDDLR--------NDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~--------~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..++|+++.++.+...+...-.. .......+.++|++|+|||++|+.+++
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45899999999998887541000 001234677999999999999999987
No 225
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.68 E-value=0.0086 Score=64.70 Aligned_cols=157 Identities=14% Similarity=0.149 Sum_probs=78.7
Q ss_pred CeeeechhHHHHHHHHHh---cCCc---CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHH
Q 035550 117 AKVYGRETEKKEIVELLL---RDDL---RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIR 190 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 190 (1385)
.+++|.++.++++.+.+. .... -+....+-|.|+|++|+||||+|+.+++. .... .+.+..+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVP---FFTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCC---EEEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCC---EEEEeHHHHHH---
Confidence 468899888877766542 1110 00111234889999999999999999873 2222 23333222110
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCc---c-----------ccccccCcccC--CCCC
Q 035550 191 LTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENY---N-----------DWDRLRPPFEA--GAPG 254 (1385)
Q Consensus 191 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~---~-----------~~~~l~~~l~~--~~~g 254 (1385)
. . .......+...+.......+.++++|++..-.. . ....+...+.. ...+
T Consensus 84 -----------~-~-~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 84 -----------M-F-VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp -----------S-C-CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred -----------H-h-hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 0 0 011222333344444455678999999821000 0 00111111111 1234
Q ss_pred cEEEEEccchhHh-hhh-C---CCCcccCCCCChhhhHHHhhhhc
Q 035550 255 SKIIVTARNQGVA-AIM-G---TAPAYQLKKLSNDDCLSVFAQHS 294 (1385)
Q Consensus 255 s~ilvTtR~~~v~-~~~-~---~~~~~~l~~L~~~~~~~lf~~~a 294 (1385)
..||.||...+.. ... . -...+.++..+.++-.+++..+.
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 5667777654321 111 1 12356677777777777776654
No 226
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.66 E-value=0.00069 Score=74.10 Aligned_cols=50 Identities=28% Similarity=0.296 Sum_probs=34.4
Q ss_pred CeeeechhHHHHHHHHHhcCCcC------CCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 117 AKVYGRETEKKEIVELLLRDDLR------NDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+++|.++.++++.+++..-... +....+-+.|+|++|+|||++|+.+++
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 45889998888887765410000 001122377999999999999999987
No 227
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.0048 Score=70.77 Aligned_cols=178 Identities=15% Similarity=0.153 Sum_probs=94.5
Q ss_pred CeeeechhHHHHHHHHHhcCCc-------CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDL-------RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVI 189 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 189 (1385)
.++.|.++.+++|.+.+.-+-. -+-...+-|.++|++|.|||+||+++++. ....| +.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhcc--
Confidence 4577898888888776532100 02233567889999999999999999983 32222 3343332111
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCC------ccc--------cccccCcccC--CCC
Q 035550 190 RLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNEN------YND--------WDRLRPPFEA--GAP 253 (1385)
Q Consensus 190 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~~~--------~~~l~~~l~~--~~~ 253 (1385)
.. .......+...+...-...+++|++|++..-- ... ...+...+.. ...
T Consensus 254 ------------k~--~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 254 ------------KY--IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp ------------SS--SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred ------------cc--chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 00 01111122222222224678999999993210 000 1112222221 223
Q ss_pred CcEEEEEccchhHhhhh--CC---CCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCC
Q 035550 254 GSKIIVTARNQGVAAIM--GT---APAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGL 320 (1385)
Q Consensus 254 gs~ilvTtR~~~v~~~~--~~---~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 320 (1385)
+..||.||-..+..... .. +..++++.-+.++-.++|+.+..+... ....++. .|++.+.|.
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~dl~----~lA~~t~G~ 386 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFDFE----AAVKMSDGF 386 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCCHH----HHHHTCCSC
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccCHH----HHHHhCCCC
Confidence 45677777665443321 11 246788888888888888776533221 1222333 467777774
No 228
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0066 Score=69.28 Aligned_cols=178 Identities=14% Similarity=0.106 Sum_probs=93.7
Q ss_pred CeeeechhHHHHHHHHHhc----CCc---CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHH
Q 035550 117 AKVYGRETEKKEIVELLLR----DDL---RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVI 189 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 189 (1385)
.++.|.++.+++|.+.+.- .+. -+-...+-|.++|++|.|||+||+++++. ....| +.+..+.-.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~L~--- 280 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSELV--- 280 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGC---
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHHhh---
Confidence 3688899888888776421 100 02234567889999999999999999983 33222 333332211
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCc------cc--------cccccCcccC--CCC
Q 035550 190 RLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENY------ND--------WDRLRPPFEA--GAP 253 (1385)
Q Consensus 190 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~------~~--------~~~l~~~l~~--~~~ 253 (1385)
... .......+...+...-...+++|++|++..--. .. ...+...+.. ...
T Consensus 281 -----------sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 281 -----------QKY--VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp -----------CCS--SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred -----------ccc--CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 110 011112222223333346789999999832100 00 0011111211 123
Q ss_pred CcEEEEEccchhHhhh-h----CCCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCC
Q 035550 254 GSKIIVTARNQGVAAI-M----GTAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGL 320 (1385)
Q Consensus 254 gs~ilvTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 320 (1385)
+..||.||-..+.... + .-+..++++.-+.++-.++|+.+..... ....-+++ .|++.+.|.
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~-l~~dvdl~----~LA~~T~Gf 414 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS-VERGIRWE----LISRLCPNS 414 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC-BCSSCCHH----HHHHHCCSC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC-CCCCCCHH----HHHHHCCCC
Confidence 4456667755443221 1 1245788888888888888887753322 11222333 367777775
No 229
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.48 E-value=0.0031 Score=80.06 Aligned_cols=155 Identities=14% Similarity=0.184 Sum_probs=82.3
Q ss_pred CeeeechhHHHHHHHHHhcCCc---CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDL---RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTK 193 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 193 (1385)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+++. ....-...+.++++.-.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~---- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKH---- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhccccc----
Confidence 4689999999999888864321 01122347889999999999999999873 22222334555554321100
Q ss_pred HHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCccccccccCcccC-----------CCCCcEEEEEcc
Q 035550 194 SILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENYNDWDRLRPPFEA-----------GAPGSKIIVTAR 262 (1385)
Q Consensus 194 ~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~-----------~~~gs~ilvTtR 262 (1385)
......+...++. ...-+|+||++.....+....+...+.. .....+||+||.
T Consensus 565 -------------~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 565 -------------STSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp -------------CCC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred -------------ccccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 0001112222222 2334899999955544444444333322 123568888887
Q ss_pred ch-----hH----hhhh-----C-CCCcccCCCCChhhhHHHhhhh
Q 035550 263 NQ-----GV----AAIM-----G-TAPAYQLKKLSNDDCLSVFAQH 293 (1385)
Q Consensus 263 ~~-----~v----~~~~-----~-~~~~~~l~~L~~~~~~~lf~~~ 293 (1385)
.. .+ ...+ . -..++.+.+++.++..+++...
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 31 11 1111 1 1235667777777666665543
No 230
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.48 E-value=0.0079 Score=63.23 Aligned_cols=85 Identities=21% Similarity=0.126 Sum_probs=52.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcC-----------CCCCCccCHH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIAS-----------DQIVDNHDLN 211 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~-----------~~~~~~~~~~ 211 (1385)
...++.|+|.+|+||||||..++. ..-..++|+.....++..++.+ +....+. .......+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 346899999999999999999986 1224678888766556555443 3322211 1111111223
Q ss_pred HHHHHHHhHcCCCeEEEEEecC
Q 035550 212 KLQEELKKKLSPKKFLLVLDDV 233 (1385)
Q Consensus 212 ~~~~~l~~~l~~~~~LlVlDdv 233 (1385)
.....++..++.+.-+||+|.+
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~ 114 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSI 114 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECC
T ss_pred HHHHHHHHHhhcCCCEEEEcCc
Confidence 3444555555445779999988
No 231
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.39 E-value=0.0068 Score=70.79 Aligned_cols=179 Identities=13% Similarity=0.123 Sum_probs=93.1
Q ss_pred CeeeechhHHHHHHHHHhcCCc------CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHH
Q 035550 117 AKVYGRETEKKEIVELLLRDDL------RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIR 190 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 190 (1385)
.+++|.++.++++.+.+..-.. -+..-.+-|.|+|++|+|||+||+.++.. .... .+.++++.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~---f~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVP---FFHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCC---EEEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCC---eeeCCHHHHHHH--
Confidence 4588998887777665432100 01111234789999999999999999973 2222 233333321110
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCc--------------cccccccCcccC--CCCC
Q 035550 191 LTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENY--------------NDWDRLRPPFEA--GAPG 254 (1385)
Q Consensus 191 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~g 254 (1385)
. ...........+.......+.+|+||++..-.. .....+...+.. ...+
T Consensus 89 --------~------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 --------F------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp --------C------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred --------H------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 0 001112233334444456789999999933110 011122221211 1235
Q ss_pred cEEEEEccchhHhhh--hCC---CCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCc
Q 035550 255 SKIIVTARNQGVAAI--MGT---APAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLP 321 (1385)
Q Consensus 255 s~ilvTtR~~~v~~~--~~~---~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 321 (1385)
..||.||...+.... ... ...+.++..+.++-.+++..++.... ......+ ..|++.+.|..
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~-l~~~v~l----~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP-LAEDVNL----EIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCCH----HHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC-CcchhhH----HHHHHhcCCCc
Confidence 567777766544321 111 23677888887777778776653221 1111122 33777888876
No 232
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.0063 Score=68.65 Aligned_cols=178 Identities=16% Similarity=0.121 Sum_probs=91.8
Q ss_pred CeeeechhHHHHHHHHHhc----CCc---CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHH
Q 035550 117 AKVYGRETEKKEIVELLLR----DDL---RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVI 189 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 189 (1385)
.++.|.++.+++|.+.+.- .+. -+-...+-|.++|++|.|||.||+++++. ....| +.+..+.-
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l---- 252 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSEL---- 252 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGG----
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHh----
Confidence 3577888888888776532 100 02233467889999999999999999983 32222 22332221
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCc------cc--------cccccCcccC--CCC
Q 035550 190 RLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENY------ND--------WDRLRPPFEA--GAP 253 (1385)
Q Consensus 190 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~------~~--------~~~l~~~l~~--~~~ 253 (1385)
.... .......+...+...-+..+++|++|++..--. .. ...+...+.. ...
T Consensus 253 ----------~sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 253 ----------IQKY--LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp ----------CCSS--SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred ----------hhcc--CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 1100 001111122222222235689999999832100 00 0011111211 223
Q ss_pred CcEEEEEccchhHhhhh--CC---CCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCC
Q 035550 254 GSKIIVTARNQGVAAIM--GT---APAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGL 320 (1385)
Q Consensus 254 gs~ilvTtR~~~v~~~~--~~---~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 320 (1385)
+..||.||-..+..+.. .. +..++++.-+.++-.++|..+.-... .....++.. |++.+.|.
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~-l~~dvdl~~----LA~~T~Gf 387 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN-LSEDVNLET----LVTTKDDL 387 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC-BCSCCCHHH----HHHHCCSC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC-CCCcCCHHH----HHHhCCCC
Confidence 44566677665543322 11 23577888888888888877653322 112223433 66677664
No 233
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.0033 Score=71.98 Aligned_cols=178 Identities=12% Similarity=0.113 Sum_probs=91.9
Q ss_pred CeeeechhHHHHHHHHHhc----CCc---CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHH
Q 035550 117 AKVYGRETEKKEIVELLLR----DDL---RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVI 189 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 189 (1385)
.++.|.++.+++|.+.+.- ++. .+-+..+-|.++|++|.|||.+|+++++. ....| +.+..+.-.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~--- 252 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQLV--- 252 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGC---
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhhhh---
Confidence 4678999998888776422 110 02234567889999999999999999983 32222 233332211
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCC------CCcc----c----cccccCcccC--CCC
Q 035550 190 RLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWN------ENYN----D----WDRLRPPFEA--GAP 253 (1385)
Q Consensus 190 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~------~~~~----~----~~~l~~~l~~--~~~ 253 (1385)
... .......+...+...-...+++|++|++.. .... . ...+...+.. ...
T Consensus 253 -----------~~~--vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 253 -----------QMY--IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp -----------SSC--SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred -----------hcc--cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 000 001111112222222234689999999821 0000 0 0112222221 123
Q ss_pred CcEEEEEccchhHhhhh--C---CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCC
Q 035550 254 GSKIIVTARNQGVAAIM--G---TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGL 320 (1385)
Q Consensus 254 gs~ilvTtR~~~v~~~~--~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 320 (1385)
+..||.||...+..... . -+..++++.-+.++-.++|+.+.-+.. ....-++. .|++.+.|.
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-~~~dvdl~----~lA~~t~G~ 386 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMT-TDDDINWQ----ELARSTDEF 386 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSC-BCSCCCHH----HHHHHCSSC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCC-CCCcCCHH----HHHHhCCCC
Confidence 44566677765443321 1 124678888888888888876643221 11222333 366777764
No 234
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.30 E-value=0.0019 Score=71.58 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=35.1
Q ss_pred chhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccc-ccCCcEEEEEe
Q 035550 122 RETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQ-DHFDLKAWTCV 182 (1385)
Q Consensus 122 r~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~ 182 (1385)
+...++.+.+++..... .....+.|+|.+|+|||+||+.+++. .. ..-..++++.+
T Consensus 133 ~~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEH
T ss_pred HHHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEH
Confidence 34455555666654321 12357889999999999999999983 32 22234555554
No 235
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.28 E-value=0.0043 Score=74.68 Aligned_cols=50 Identities=28% Similarity=0.360 Sum_probs=35.6
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+++|.++..+.+.+.+.-..........++.++|++|+||||||+.++.
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 45789888888776654321110112356899999999999999999987
No 236
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.27 E-value=0.0018 Score=70.01 Aligned_cols=67 Identities=18% Similarity=0.345 Sum_probs=44.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEe--CCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCV--SDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKL 221 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 221 (1385)
.+++.|+|++|+||||||.+++.. .-..+.|++. .+..+. ...+.+...+.+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-----------------~~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-----------------YNTDFNVFVDDIARAM 180 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-----------------CBCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-----------------hhcCHHHHHHHHHHHH
Confidence 467889999999999999999863 1223556666 332110 0134555566666666
Q ss_pred CCCeEEEEEecC
Q 035550 222 SPKKFLLVLDDV 233 (1385)
Q Consensus 222 ~~~~~LlVlDdv 233 (1385)
...+ +||+|++
T Consensus 181 ~~~~-LLVIDsI 191 (331)
T 2vhj_A 181 LQHR-VIVIDSL 191 (331)
T ss_dssp HHCS-EEEEECC
T ss_pred hhCC-EEEEecc
Confidence 5555 9999999
No 237
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.21 E-value=0.0028 Score=71.71 Aligned_cols=41 Identities=20% Similarity=0.196 Sum_probs=34.8
Q ss_pred eeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 118 KVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 118 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.++|+++.++.+...+... .-+.++|++|+|||++|+.+++
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHH
T ss_pred ceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHH
Confidence 4789999999998888653 2577999999999999999987
No 238
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=95.75 E-value=0.0017 Score=59.13 Aligned_cols=20 Identities=25% Similarity=0.586 Sum_probs=18.2
Q ss_pred CcccccchhhhhhHhHHHHH
Q 035550 1 LQNLAFDVEDLLDEFQTEAF 20 (1385)
Q Consensus 1 lr~~~yd~eD~ld~~~~~~~ 20 (1385)
|||+|||||||||+|.|+.-
T Consensus 64 vrdlaYD~ED~iD~f~~~~~ 83 (115)
T 3qfl_A 64 VRELSYVIEDVVDKFLVQVD 83 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 58999999999999998773
No 239
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.74 E-value=0.038 Score=68.51 Aligned_cols=179 Identities=13% Similarity=0.159 Sum_probs=96.4
Q ss_pred CeeeechhHHHHHHHHHh----cCCc---CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHH
Q 035550 117 AKVYGRETEKKEIVELLL----RDDL---RNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVI 189 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~----~~~~---~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 189 (1385)
.++.|.++.+++|.+++. .++. -+-...+-|.++|++|+|||+||+++++. ...+| +.|+.++
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhHH-----
Confidence 467888888888877653 1111 02234567889999999999999999984 32222 3343221
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCCeEEEEEecCCCCCc------ccc-----ccccCcccCC--CCCcE
Q 035550 190 RLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPKKFLLVLDDVWNENY------NDW-----DRLRPPFEAG--APGSK 256 (1385)
Q Consensus 190 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~------~~~-----~~l~~~l~~~--~~gs~ 256 (1385)
+. ... .......+...+....+..+.+|++|++..--. .+. ..+...+... ..+..
T Consensus 274 -----l~----sk~--~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 274 -----IM----SKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp -----HH----SSC--TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred -----hh----ccc--chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 11 111 112223344444555567899999999832100 000 1122222111 12344
Q ss_pred EEEEccchhHhhh-hC----CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCc
Q 035550 257 IIVTARNQGVAAI-MG----TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLP 321 (1385)
Q Consensus 257 ilvTtR~~~v~~~-~~----~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 321 (1385)
||.||...+.... +. -...++++..+.++-.++|..+..+.. .....++. .|++++.|.-
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~-~~~dvdl~----~lA~~T~Gfs 407 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVDLE----QVANETHGHV 407 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE-ECTTCCHH----HHHHHCCSCC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC-CCcccCHH----HHHHhcCCCC
Confidence 5666665433221 11 124678888888888888887653321 11222333 4777787764
No 240
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.70 E-value=0.01 Score=55.71 Aligned_cols=53 Identities=21% Similarity=0.204 Sum_probs=43.5
Q ss_pred eEEEEcCcccc--cccccccCCccccEEecccccccccch-hhhccCCccEEecCCCc
Q 035550 533 RVFSLRGYYIS--ELPDSFGDLRYLRYLNLSLTEIRTLPE-SVNKLYNLHTLLLEGCR 587 (1385)
Q Consensus 533 r~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~i~~lP~-~i~~L~~L~~L~L~~~~ 587 (1385)
.+++.+++.++ .+|..+. .+|++|+|++|+|+.+|. .|..+.+|++|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 37888888888 8887664 478999999999999984 46888899999998873
No 241
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.67 E-value=0.011 Score=76.08 Aligned_cols=50 Identities=20% Similarity=0.375 Sum_probs=37.8
Q ss_pred CeeeechhHHHHHHHHHhcCCc---CCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 117 AKVYGRETEKKEIVELLLRDDL---RNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..++|.+..++.+...+..... ..+.....+.|+|+.|+|||++|+.+++
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999888754321 0112345788999999999999999987
No 242
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.44 E-value=0.0088 Score=76.10 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=37.3
Q ss_pred CeeeechhHHHHHHHHHhcCCc---CCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 117 AKVYGRETEKKEIVELLLRDDL---RNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..++|.++.++.+...+..... ..+.....+.++|++|+|||++|+.+++
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 4588999999888887753211 0112345788999999999999999987
No 243
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.33 E-value=0.021 Score=63.79 Aligned_cols=84 Identities=20% Similarity=0.190 Sum_probs=54.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCC----CCccCHHHHHHHHH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQI----VDNHDLNKLQEELK 218 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~l~ 218 (1385)
.-+++.|+|++|+||||||.+++.. ....-..++|++....++.. .+++++.... ....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 4579999999999999999999863 22222357888877766654 3444443211 12345556655555
Q ss_pred hHcC-CCeEEEEEecC
Q 035550 219 KKLS-PKKFLLVLDDV 233 (1385)
Q Consensus 219 ~~l~-~~~~LlVlDdv 233 (1385)
..++ .+.-++|+|.+
T Consensus 133 ~l~~~~~~dlvVIDSi 148 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSV 148 (356)
T ss_dssp HHHHTSCCSEEEEECT
T ss_pred HHhhhcCCCeEEehHh
Confidence 5443 44568999998
No 244
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.11 E-value=0.042 Score=61.86 Aligned_cols=84 Identities=18% Similarity=0.118 Sum_probs=55.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCC----CCccCHHHHHHHHH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQI----VDNHDLNKLQEELK 218 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~l~ 218 (1385)
..+++.|.|.+|+||||||.+++.. ....-..++|++....++... +..++.... ....+.+++.+.+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~~-----a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPVY-----ARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHHH-----HHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 3468899999999999999988763 222234689999887766542 334433211 12235566666666
Q ss_pred hHcC-CCeEEEEEecC
Q 035550 219 KKLS-PKKFLLVLDDV 233 (1385)
Q Consensus 219 ~~l~-~~~~LlVlDdv 233 (1385)
...+ ...-+||+|.+
T Consensus 146 ~l~~~~~~~lVVIDsl 161 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSV 161 (366)
T ss_dssp HHHTTTCCSEEEEECT
T ss_pred HHHhcCCCCEEEEeCh
Confidence 6554 34459999998
No 245
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.04 E-value=0.0082 Score=62.18 Aligned_cols=113 Identities=11% Similarity=-0.062 Sum_probs=62.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCC-CCccCHHHHHHHHHhHcC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQI-VDNHDLNKLQEELKKKLS 222 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~l~~~l~ 222 (1385)
..++.|+|..|+||||+|..+.+. ...+-..++.+..... .. ....++..++.... .......++.+.+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 468999999999999999888773 3333233444432221 11 11233333432211 012234556666666665
Q ss_pred CCeE-EEEEecCCCCCccccccccCcccCCCCCcEEEEEccch
Q 035550 223 PKKF-LLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQ 264 (1385)
Q Consensus 223 ~~~~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 264 (1385)
+.++ +||+|.+..-+.+..+.+. .+.. .|-.||+|-++.
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLDK 126 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCSB
T ss_pred CCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEeccc
Confidence 5545 9999998443222333332 2222 367899998854
No 246
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.03 E-value=0.049 Score=61.23 Aligned_cols=58 Identities=17% Similarity=0.130 Sum_probs=39.9
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccc----cCCcEEEEEeCCCCCHHHHHHHHHHHhc
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQD----HFDLKAWTCVSDDFDVIRLTKSILLSIA 200 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 200 (1385)
+...++.|+|.+|+||||||.+++....... .-..++|++....++..++.+ ++..++
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 3457999999999999999999876321111 234688998888777766543 334443
No 247
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.95 E-value=0.062 Score=57.90 Aligned_cols=81 Identities=11% Similarity=0.103 Sum_probs=53.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcccccc--CCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CccCHHHH-HHHHH
Q 035550 146 VIPIIGMGGLGKTTLAQLVYNDKQVQDH--FDLKAWTCVSDDFDVIRLTKSILLSIASDQIV----DNHDLNKL-QEELK 218 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~-~~~l~ 218 (1385)
++-|.|.+|+||||||.+++.. .... -..++|++....++.. .+++++..... ...+.++. .+.+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 6899999999999999988763 3222 2468899888877754 25666543220 12345554 33333
Q ss_pred hH--c-CCCeEEEEEecC
Q 035550 219 KK--L-SPKKFLLVLDDV 233 (1385)
Q Consensus 219 ~~--l-~~~~~LlVlDdv 233 (1385)
.. + +++.-++|+|-|
T Consensus 103 ~l~~i~~~~~~lvVIDSI 120 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSL 120 (333)
T ss_dssp HHHTCCTTCCEEEEEECS
T ss_pred HHHHhhccCceEEEEecc
Confidence 32 3 456789999998
No 248
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.89 E-value=0.053 Score=60.85 Aligned_cols=84 Identities=20% Similarity=0.126 Sum_probs=54.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCC----CCccCHHHHHHHHH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQI----VDNHDLNKLQEELK 218 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~l~ 218 (1385)
..+++.|+|.+|+||||||.+++.. ....=..++|++....++.. .++.++.... ....+.++..+.+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 3568999999999999999998863 22223468899887766653 2344443211 02234555555555
Q ss_pred hHcC-CCeEEEEEecC
Q 035550 219 KKLS-PKKFLLVLDDV 233 (1385)
Q Consensus 219 ~~l~-~~~~LlVlDdv 233 (1385)
...+ .+.-+||+|.+
T Consensus 133 ~l~~~~~~~lIVIDsl 148 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSV 148 (349)
T ss_dssp HHHTTTCCSEEEEECG
T ss_pred HHHhcCCCCEEEEcCh
Confidence 5543 34569999998
No 249
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.81 E-value=0.09 Score=61.74 Aligned_cols=176 Identities=12% Similarity=0.108 Sum_probs=88.0
Q ss_pred CCeeeechhHHHHHHHHHh---cCCcC---CCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHH
Q 035550 116 EAKVYGRETEKKEIVELLL---RDDLR---NDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVI 189 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~---~~~~~---~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 189 (1385)
-.+++|.++.++++.+... ....- +..-.+-|.|+|++|+||||||+.++.. .. ...+.++.+.-.+
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~---~~~i~i~g~~~~~-- 102 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGSDFVE-- 102 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TT---CCEEEEEGGGGTS--
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hC---CCEEEEehhHHHH--
Confidence 3468899887777766542 21100 0011123889999999999999999973 22 1233444322100
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcC----CCeEEEEEecCCCCC----------cccc----ccccCcccCC
Q 035550 190 RLTKSILLSIASDQIVDNHDLNKLQEELKKKLS----PKKFLLVLDDVWNEN----------YNDW----DRLRPPFEAG 251 (1385)
Q Consensus 190 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~----~~~~LlVlDdv~~~~----------~~~~----~~l~~~l~~~ 251 (1385)
. ........++..++ ..+.++++|++..-. .+.+ ..+...+..+
T Consensus 103 ------------~------~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 103 ------------M------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp ------------S------CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred ------------h------hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 0 00011122333332 245799999993211 0111 1222222222
Q ss_pred --CCCcEEEEEccchhHhhhh--C---CCCcccCCCCChhhhHHHhhhhccCcCCCCCchhHHHHHHHHHHhcCCCc
Q 035550 252 --APGSKIIVTARNQGVAAIM--G---TAPAYQLKKLSNDDCLSVFAQHSLGTRDFSSNKSLEEIGKKIVIKCNGLP 321 (1385)
Q Consensus 252 --~~gs~ilvTtR~~~v~~~~--~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 321 (1385)
..+..|+.||...++.... . -...+.+...+.++-.+++..++-+. ....... ...|++.+.|.-
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~-~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS-CCCCSST----THHHHTTSCSCC
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC-CCChHHH----HHHHHHhcCCCC
Confidence 2334566667666543211 1 12467788888888888887665321 1111111 233666777754
No 250
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.80 E-value=0.1 Score=56.79 Aligned_cols=82 Identities=17% Similarity=0.120 Sum_probs=45.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccc-cCCcEEEEEeCCCCCHHHHHHHHHHHh------cCCCCCCccCHHHHH
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQD-HFDLKAWTCVSDDFDVIRLTKSILLSI------ASDQIVDNHDLNKLQ 214 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~~------~~~~~~~~~~~~~~~ 214 (1385)
....+|+|+|..|+||||||+.+........ ....+..|....-+-.......+.... .....+...+.+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 4567999999999999999998876321111 122344435443322334444443321 111123556677777
Q ss_pred HHHHhHcCC
Q 035550 215 EELKKKLSP 223 (1385)
Q Consensus 215 ~~l~~~l~~ 223 (1385)
+.+...-.+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 666665444
No 251
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.79 E-value=0.027 Score=57.98 Aligned_cols=43 Identities=23% Similarity=0.193 Sum_probs=34.1
Q ss_pred echhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 121 GRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 121 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.|++.++++.+.+.... .....+|+|+|..|+||||+++.+..
T Consensus 2 ~~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CHHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 36677888888876542 23457999999999999999999876
No 252
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.74 E-value=0.044 Score=61.53 Aligned_cols=84 Identities=20% Similarity=0.098 Sum_probs=52.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCC----CCccCHHHHHHHHH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQI----VDNHDLNKLQEELK 218 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~l~ 218 (1385)
..+++.|.|.+|+||||||.+++.. ....-..++|++....++... +..++.... ....+.+++.+.++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 3468999999999999999998863 222234688999877776442 334433211 01223455555544
Q ss_pred hHcC-CCeEEEEEecC
Q 035550 219 KKLS-PKKFLLVLDDV 233 (1385)
Q Consensus 219 ~~l~-~~~~LlVlDdv 233 (1385)
...+ .+.-+||+|.+
T Consensus 135 ~l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 135 ALARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHHTCCSEEEEECG
T ss_pred HHHhccCCCEEEEcCH
Confidence 4332 34458999998
No 253
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.71 E-value=0.06 Score=58.28 Aligned_cols=50 Identities=26% Similarity=0.180 Sum_probs=30.9
Q ss_pred CeeeechhHHHHHHHHHhcCCc-------CCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 117 AKVYGRETEKKEIVELLLRDDL-------RNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.++.|.++.+++|.+.+...-. -+-.-.+-+.++|++|+||||||+.++.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3466777777777654421000 0000011289999999999999999987
No 254
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.70 E-value=0.043 Score=58.58 Aligned_cols=90 Identities=14% Similarity=0.104 Sum_probs=51.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccc----cCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCC--------CCccCH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQD----HFDLKAWTCVSDDFDVIRLTKSILLSIASDQI--------VDNHDL 210 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~ 210 (1385)
...++.|+|.+|+||||||+.++....... .-..++|+.....++..++. +++..++.... ....+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 346999999999999999999876211111 13568888877655554433 33344432210 011122
Q ss_pred HH---HHHHHHhHcC-CCeEEEEEecC
Q 035550 211 NK---LQEELKKKLS-PKKFLLVLDDV 233 (1385)
Q Consensus 211 ~~---~~~~l~~~l~-~~~~LlVlDdv 233 (1385)
.+ ....+.+.+. .+.-+||+|.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~ 128 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSA 128 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCc
Confidence 22 2233444443 46678899988
No 255
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.60 E-value=0.058 Score=60.19 Aligned_cols=90 Identities=19% Similarity=0.252 Sum_probs=53.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccc----cCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCC--------CCccCH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQD----HFDLKAWTCVSDDFDVIRLTKSILLSIASDQI--------VDNHDL 210 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~ 210 (1385)
...++.|+|.+|+||||+|.+++....... .-..++|++....++..++.+ +++.++.... ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 346899999999999999999875321111 024688998888777766553 3444433210 011122
Q ss_pred H---HHHHHHHhHcC--CCeEEEEEecC
Q 035550 211 N---KLQEELKKKLS--PKKFLLVLDDV 233 (1385)
Q Consensus 211 ~---~~~~~l~~~l~--~~~~LlVlDdv 233 (1385)
+ ++...+...++ .+.-+||+|.+
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 2 23334444443 45568888887
No 256
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.52 E-value=0.013 Score=58.51 Aligned_cols=117 Identities=16% Similarity=0.128 Sum_probs=60.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCC---CCCHHHHHHHHHHHhc--CCCCC-Cc-------cCHHH
Q 035550 146 VIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD---DFDVIRLTKSILLSIA--SDQIV-DN-------HDLNK 212 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~~~--~~~~~-~~-------~~~~~ 212 (1385)
.|-|++-.|.||||.|-...- +...+=..+.++.... ..+...+++.+.-.+. +.... .. .....
T Consensus 30 ~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 455666666999999987765 2333333455554333 2233344443310000 00000 00 11122
Q ss_pred HHHHHHhHcCCCeE-EEEEecCCCC---CccccccccCcccCCCCCcEEEEEccch
Q 035550 213 LQEELKKKLSPKKF-LLVLDDVWNE---NYNDWDRLRPPFEAGAPGSKIIVTARNQ 264 (1385)
Q Consensus 213 ~~~~l~~~l~~~~~-LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 264 (1385)
.....++.+.+.+| |||||++-.. ..-..+++...+........||+|+|..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 33456666666666 9999998211 1123344555555445667899999986
No 257
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.49 E-value=0.0086 Score=60.22 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=16.4
Q ss_pred ccceeEEccc-Ccch----hhhhhcCCCCCCcEEeecCCC
Q 035550 1139 SLKSLVVWSC-SKLE----SIAERLDNNTSLETISIDSCG 1173 (1385)
Q Consensus 1139 ~L~~L~L~~~-~~~~----~~~~~l~~l~~L~~L~L~~n~ 1173 (1385)
.|++|+|++| .+.. .+...+..-+.|+.|+|++|.
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ 81 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA 81 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC
Confidence 4555555553 2221 233344444555555555554
No 258
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.16 E-value=0.046 Score=60.02 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
..+.+.++|++|+|||+||+.+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467889999999999999999983
No 259
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=93.93 E-value=0.16 Score=57.30 Aligned_cols=156 Identities=12% Similarity=-0.025 Sum_probs=93.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHh-HcC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKK-KLS 222 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~ 222 (1385)
.++..++|..|.||++.|+.+.+.. ....|+....+.+....+ ..++.+.+.. -+-
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~----------------------~~~l~~~~~~~plf 74 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVA-AAQGFEEHHTFSIDPNTD----------------------WNAIFSLCQAMSLF 74 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHH-HHHTCCEEEEEECCTTCC----------------------HHHHHHHHHHHHHC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHH-HhCCCCeeEEEEecCCCC----------------------HHHHHHHhcCcCCc
Confidence 4688899999999999999887631 112343222222222222 3333333222 133
Q ss_pred CCeEEEEEecCCC-CCccccccccCcccCCCCCcEEEEEccc-------hhHhhhhC-CCCcccCCCCChhhhHHHhhhh
Q 035550 223 PKKFLLVLDDVWN-ENYNDWDRLRPPFEAGAPGSKIIVTARN-------QGVAAIMG-TAPAYQLKKLSNDDCLSVFAQH 293 (1385)
Q Consensus 223 ~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~-------~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~ 293 (1385)
+++-++|+|++.. -+...++.+...+.....++.+|++|.. ..+...+. ....++..+++.++....+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 5567888999855 3335566666666544557777766543 23444433 3357889999999988877776
Q ss_pred ccCcCCCCCchhHHHHHHHHHHhcCCCchHHHH
Q 035550 294 SLGTRDFSSNKSLEEIGKKIVIKCNGLPLAAKT 326 (1385)
Q Consensus 294 a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 326 (1385)
+-..+.... .+.+..+++.++|...++..
T Consensus 155 ~~~~g~~i~----~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 155 AKQLNLELD----DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHTTCEEC----HHHHHHHHHSSTTCHHHHHH
T ss_pred HHHcCCCCC----HHHHHHHHHHhchHHHHHHH
Confidence 532221111 24566789999998877764
No 260
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.67 E-value=0.1 Score=57.00 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=44.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCC-CCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD-FDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKL 221 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 221 (1385)
...+++|+|.+|+||||++..++........ ..+..+..... ....+.+....+..+.... ...+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~-~~~~~~~l~~al~~-~ 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLE-VCYTKEEFQQAKEL-F 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCC-BCSSHHHHHHHHHH-G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeE-ecCCHHHHHHHHHH-h
Confidence 3569999999999999999998763221111 23455544321 2222223333332222211 11233444444443 3
Q ss_pred CCCeEEEEEecC
Q 035550 222 SPKKFLLVLDDV 233 (1385)
Q Consensus 222 ~~~~~LlVlDdv 233 (1385)
.+.=++|+|-.
T Consensus 181 -~~~dlvIiDT~ 191 (296)
T 2px0_A 181 -SEYDHVFVDTA 191 (296)
T ss_dssp -GGSSEEEEECC
T ss_pred -cCCCEEEEeCC
Confidence 33447888843
No 261
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.65 E-value=0.077 Score=59.29 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=53.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccc---------cC-----CcEEEEEeCCCCCHHHHHHHHHHHhcCCCC----
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQD---------HF-----DLKAWTCVSDDFDVIRLTKSILLSIASDQI---- 204 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~---- 204 (1385)
...++.|+|.+|+||||+|.+++....... .. ..++|++....++..++.+. +..++....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCCCHHHHhc
Confidence 457999999999999999998875321110 11 46889988887777766543 444433210
Q ss_pred ----CCccCHH---HHHHHHHhHcC--CCeEEEEEecC
Q 035550 205 ----VDNHDLN---KLQEELKKKLS--PKKFLLVLDDV 233 (1385)
Q Consensus 205 ----~~~~~~~---~~~~~l~~~l~--~~~~LlVlDdv 233 (1385)
....+.+ ++.+.+.+.++ .+.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0112222 23334444443 34458888887
No 262
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.64 E-value=0.049 Score=56.35 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=28.6
Q ss_pred hHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 124 TEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 124 ~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
+-+++|.+.+... .....+|+|+|..|.|||||++.+..
T Consensus 6 ~~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 6 ALCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445555555432 23467999999999999999999876
No 263
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.53 E-value=0.018 Score=57.92 Aligned_cols=92 Identities=12% Similarity=0.148 Sum_probs=49.1
Q ss_pred hhhhhcCCCCCCcEEeecCCCCccc-----cCCCCCCccCcceEEeccccCcccc----cccCCCCCccceeeccccCCC
Q 035550 1153 SIAERLDNNTSLETISIDSCGNLVS-----FPEGGLPCVKLRMLAITNCKRLEAL----PKGLHNLTSLQELTIGIGGAL 1223 (1385)
Q Consensus 1153 ~~~~~l~~l~~L~~L~L~~n~~l~~-----~~~~~~~l~~L~~L~L~~n~~~~~l----p~~l~~l~~L~~L~L~~n~~~ 1223 (1385)
.+...+.+-+.|++|+|++|..++. +-..+..-+.|++|+|++|.+.... .+.+..-+.|++|+|++|.+.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3444556678888999987632332 2222334457777777777654322 223334456666666666643
Q ss_pred CC----CcccCCCCCCcceeEecCC
Q 035550 1224 PS----LEEEDGLPTNLQSLNIWGN 1244 (1385)
Q Consensus 1224 ~~----~~~~~~~~~~L~~L~L~~n 1244 (1385)
.. +.+.+..-+.|++|+|++|
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCC
Confidence 22 2223333444555555543
No 264
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.44 E-value=0.066 Score=67.69 Aligned_cols=52 Identities=27% Similarity=0.215 Sum_probs=38.4
Q ss_pred CCeeeechhHHHHHHHHHhcC----Cc---CCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 116 EAKVYGRETEKKEIVELLLRD----DL---RNDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~~~----~~---~~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
-.+++|.++.++++.+++... .. -+-.....|.|+|++|+||||||+.++..
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 356899999999998887430 00 01123456899999999999999999873
No 265
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.24 E-value=0.074 Score=57.99 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 124 TEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 124 ~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
+.+++++..+..... ......+|.|.|++|+||||+|+.+..
T Consensus 14 ~~~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 14 NRLNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344444444444322 334467899999999999999999976
No 266
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.13 E-value=0.037 Score=55.62 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+|.|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 267
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.08 E-value=0.18 Score=53.10 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=30.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccc---cc-cCCcEEEEEeCCCCCH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQV---QD-HFDLKAWTCVSDDFDV 188 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~---~~-~f~~~~wv~~~~~~~~ 188 (1385)
.-.+++|+|+.|+|||||++.++..... .. .-..++|+.....+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 3579999999999999999998752111 01 1345778776554443
No 268
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.07 E-value=0.22 Score=55.18 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=36.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLS 198 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 198 (1385)
...++.|.|.+|+||||+|..++.....++ ..++|++.- .+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 346899999999999999999876422222 567777654 4566666666654
No 269
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.03 E-value=0.051 Score=55.39 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
..+++|+|+.|+||||+++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 478999999999999999999873
No 270
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.02 E-value=0.19 Score=55.17 Aligned_cols=102 Identities=11% Similarity=-0.026 Sum_probs=52.6
Q ss_pred eechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHh
Q 035550 120 YGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSI 199 (1385)
Q Consensus 120 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~ 199 (1385)
+|-...+..+...+.... ......+|+|.|..|+||||+|+.+..-......-..+..+....-+-........ ...
T Consensus 70 ~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~-~~~ 146 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQ-GLM 146 (321)
T ss_dssp HHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHT-TCG
T ss_pred hcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhH-HHH
Confidence 455555555555554432 23456799999999999999999887521100001124444443322111111110 001
Q ss_pred cCCCCCCccCHHHHHHHHHhHcCCC
Q 035550 200 ASDQIVDNHDLNKLQEELKKKLSPK 224 (1385)
Q Consensus 200 ~~~~~~~~~~~~~~~~~l~~~l~~~ 224 (1385)
.....+...+.+.+.+.+.....++
T Consensus 147 ~~~g~P~~~D~~~l~~~L~~L~~g~ 171 (321)
T 3tqc_A 147 KRKGFPESYDMPSLLRVLNAIKSGQ 171 (321)
T ss_dssp GGTTSGGGBCHHHHHHHHHHHHTTC
T ss_pred hhccCcccccHHHHHHHHHhhhccc
Confidence 1111234566777777776666655
No 271
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.99 E-value=0.059 Score=63.38 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=34.8
Q ss_pred eeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 119 VYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 119 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
++|+++.++.+...+... .-|.++|++|+|||+||+.+++.
T Consensus 24 ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp CSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 689999998888887554 35789999999999999999973
No 272
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.92 E-value=0.047 Score=54.79 Aligned_cols=20 Identities=50% Similarity=0.755 Sum_probs=18.7
Q ss_pred EEEEEEcCCCChHHHHHHHH
Q 035550 145 SVIPIIGMGGLGKTTLAQLV 164 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v 164 (1385)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999998
No 273
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.84 E-value=0.081 Score=56.62 Aligned_cols=43 Identities=21% Similarity=0.222 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 123 ETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 123 ~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
+...++++..+..... ......+|.|+|++|+||||+|+.+..
T Consensus 12 ~~~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 12 KHALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444455555544432 334567899999999999999999876
No 274
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.80 E-value=0.13 Score=48.21 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=16.3
Q ss_pred CcceEEeccccCcccccccCCCCCccceeeccccC
Q 035550 1187 KLRMLAITNCKRLEALPKGLHNLTSLQELTIGIGG 1221 (1385)
Q Consensus 1187 ~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~ 1221 (1385)
+|++|+|++|.+...-+..|..+++|+.|+|++|+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 45555555554333223334445555555555444
No 275
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.79 E-value=0.045 Score=54.65 Aligned_cols=22 Identities=23% Similarity=0.156 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999986
No 276
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.75 E-value=0.097 Score=60.08 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=33.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCC-CHHHHHHHHH
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF-DVIRLTKSIL 196 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~ 196 (1385)
..++|+|..|+||||||..+....... .-+..+++-+.+.. ...++.+++.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhh
Confidence 468899999999999999988742221 22445666666654 3344444443
No 277
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.71 E-value=0.11 Score=57.40 Aligned_cols=42 Identities=19% Similarity=0.014 Sum_probs=28.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCc-EEEEEeCCCC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDL-KAWTCVSDDF 186 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~ 186 (1385)
...++|+|..|+|||||++.+.+... +++-+. ++++-+.+..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~-~~~~~v~~I~~lIGER~ 216 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIA-YNHPDCVLMVLLIDERP 216 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHH-HHCTTSEEEEEEESSCH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHh-hcCCCeeEEEEEecCCh
Confidence 46899999999999999999876321 111122 3456666653
No 278
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.67 E-value=0.15 Score=57.36 Aligned_cols=48 Identities=23% Similarity=0.245 Sum_probs=32.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccC----CcEEEEEeCCCCCHHH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF----DLKAWTCVSDDFDVIR 190 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~~ 190 (1385)
...++.|+|..|+|||||+..++......... ..++|++....+...+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~ 181 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 181 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH
Confidence 45899999999999999999987632111111 2458888766554333
No 279
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.59 E-value=0.055 Score=55.52 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+|.|+|+.|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 280
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.58 E-value=0.1 Score=57.42 Aligned_cols=45 Identities=20% Similarity=0.295 Sum_probs=32.3
Q ss_pred eechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 120 YGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 120 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
|+-+.-++++++.+...- ..+....|.|+|++|+||||+|+.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 455566677777664322 123456789999999999999998886
No 281
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.53 E-value=0.058 Score=54.34 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 282
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.48 E-value=0.071 Score=54.70 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+|+|+|+.|+||||+|+.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999999987
No 283
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.36 E-value=0.21 Score=52.65 Aligned_cols=38 Identities=18% Similarity=0.113 Sum_probs=26.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVS 183 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 183 (1385)
..+++|+|.+|+|||||++.++... ...-..++|+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~--~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKG--LRDGDPCIYVTTE 60 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHH--HHHTCCEEEEESS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH--HHCCCeEEEEEcc
Confidence 3689999999999999999988532 1122346666543
No 284
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.35 E-value=0.066 Score=53.83 Aligned_cols=23 Identities=13% Similarity=0.416 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999876
No 285
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.32 E-value=0.25 Score=56.24 Aligned_cols=57 Identities=19% Similarity=0.152 Sum_probs=36.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccc----cccCCcEEEEEeCCCCCHHHHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQV----QDHFDLKAWTCVSDDFDVIRLTKSILLSIA 200 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 200 (1385)
.-.++.|+|.+|+|||||+..++-.... ...-..++|++....++..++. .+++.++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~g 237 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFG 237 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcC
Confidence 3469999999999999999976421111 1123458888877666655443 3455544
No 286
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.13 E-value=0.061 Score=54.42 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
+.|.|+|+.|+||||+|+.+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999986
No 287
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.05 E-value=0.061 Score=53.70 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+|+|+|+.|+||||+|+.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 288
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.01 E-value=0.02 Score=57.76 Aligned_cols=22 Identities=27% Similarity=0.070 Sum_probs=19.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.++.|+|+.|+||||+|..++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999976665
No 289
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.00 E-value=0.25 Score=54.00 Aligned_cols=109 Identities=20% Similarity=0.182 Sum_probs=54.9
Q ss_pred chhHHHHHHHHHhcCCcC--CCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHH--HHHHHHHH
Q 035550 122 RETEKKEIVELLLRDDLR--NDGEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVI--RLTKSILL 197 (1385)
Q Consensus 122 r~~~~~~l~~~L~~~~~~--~~~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~ 197 (1385)
++.-.+++.+.+.....- ......+|+|+|.+|+||||++..++.. ....-..+.++... .+... +-++..++
T Consensus 80 ~~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~D-~~r~~a~eqL~~~~~ 156 (306)
T 1vma_A 80 LESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAAD-TFRAAAIEQLKIWGE 156 (306)
T ss_dssp HHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEEC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEccc-cccHHHHHHHHHHHH
Confidence 344555566665432110 1235689999999999999999998863 22222234555443 23222 11223334
Q ss_pred HhcCCCC--CCccCHHHH-HHHHHhHcCCCeEEEEEecC
Q 035550 198 SIASDQI--VDNHDLNKL-QEELKKKLSPKKFLLVLDDV 233 (1385)
Q Consensus 198 ~~~~~~~--~~~~~~~~~-~~~l~~~l~~~~~LlVlDdv 233 (1385)
..+.... ....+...+ .+.+...+....=++|+|-.
T Consensus 157 ~~gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 157 RVGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTA 195 (306)
T ss_dssp HHTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred HcCCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 3332111 011222222 23444444444457888866
No 290
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.98 E-value=0.096 Score=52.35 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+|+|+|+.|+||||+|+.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 291
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.98 E-value=0.81 Score=52.37 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999988875
No 292
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.93 E-value=0.076 Score=52.80 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=20.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997653
No 293
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.77 E-value=0.079 Score=54.37 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+|+|+|+.|+||||+|+.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 294
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.76 E-value=0.088 Score=53.64 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 295
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=91.61 E-value=0.1 Score=59.41 Aligned_cols=49 Identities=33% Similarity=0.312 Sum_probs=35.2
Q ss_pred eeeechhHHHHHHHHHhcC-------C--cCCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 118 KVYGRETEKKEIVELLLRD-------D--LRNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 118 ~~vGr~~~~~~l~~~L~~~-------~--~~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.++|.+..++.+...+... . .........|.++|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4689999888888877310 0 00111235688999999999999999987
No 296
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.53 E-value=0.089 Score=56.32 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 297
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.53 E-value=0.091 Score=54.28 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
..+|+|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999863
No 298
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.52 E-value=0.097 Score=53.13 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5889999999999999999975
No 299
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.51 E-value=0.34 Score=53.55 Aligned_cols=52 Identities=17% Similarity=0.038 Sum_probs=36.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHh
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSI 199 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~ 199 (1385)
..++.|.|.+|+||||+|..++..... .=..++|++. ..+..++...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 368999999999999999998864222 2234666654 456677777766544
No 300
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.44 E-value=0.071 Score=54.85 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+|+|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999886
No 301
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.42 E-value=0.085 Score=53.81 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 302
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.40 E-value=0.37 Score=55.08 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...+++|+|.+|+||||++..++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999886
No 303
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.39 E-value=0.083 Score=52.39 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+|+|.|+.|+||||+|+.+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999986
No 304
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.34 E-value=0.1 Score=52.67 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...|+|+|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999886
No 305
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.33 E-value=0.097 Score=53.98 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999876
No 306
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.31 E-value=0.078 Score=53.33 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.++|.|+|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999986
No 307
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.29 E-value=0.11 Score=53.67 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...+|+|+|+.|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999986
No 308
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.14 E-value=0.094 Score=53.36 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 309
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.11 E-value=0.11 Score=55.53 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+|.|+|+.|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999986
No 310
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.10 E-value=0.082 Score=54.45 Aligned_cols=24 Identities=29% Similarity=0.474 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...+|.|+|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 311
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=91.09 E-value=0.11 Score=51.90 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 035550 146 VIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998763
No 312
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.09 E-value=0.085 Score=53.38 Aligned_cols=22 Identities=36% Similarity=0.529 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 313
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.06 E-value=0.11 Score=53.34 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+.++|.|.|++|+||+|.|+.++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999886
No 314
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=91.04 E-value=0.11 Score=57.08 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=28.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCC
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD 184 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 184 (1385)
.+.+||+|.|-|||||||.|..+.- .....=..+.-+.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~--aLA~~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHH--HHHHCCCeEEEEecCC
Confidence 3568999999999999998877654 2222223466666653
No 315
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.97 E-value=0.063 Score=53.76 Aligned_cols=22 Identities=36% Similarity=0.529 Sum_probs=19.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
|.|.|+|+.|+|||||++++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999875
No 316
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.97 E-value=0.13 Score=52.98 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...+|+|.|+.|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999886
No 317
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.91 E-value=0.12 Score=53.69 Aligned_cols=24 Identities=46% Similarity=0.371 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...+|+|+|..|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 318
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.89 E-value=0.11 Score=53.53 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
..+|+|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999763
No 319
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=90.87 E-value=0.15 Score=51.54 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
...+|.|+|++|+||||+|+.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 320
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.85 E-value=0.11 Score=53.37 Aligned_cols=24 Identities=38% Similarity=0.429 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...+|+|+|+.|+||||+|+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999986
No 321
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.81 E-value=0.13 Score=53.15 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 322
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.80 E-value=0.079 Score=53.50 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+|+|+|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 323
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=90.80 E-value=0.48 Score=54.63 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhcCCc---CCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 124 TEKKEIVELLLRDDL---RNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 124 ~~~~~l~~~L~~~~~---~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.-.+++.+++..... ......++|.++|.+|+||||+|..++.
T Consensus 77 ~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 77 IVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345566666643211 0123568999999999999999998886
No 324
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.79 E-value=0.1 Score=53.68 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 035550 146 VIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999986
No 325
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.70 E-value=0.15 Score=49.57 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+++|+|+.|+|||||++.++.
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999876
No 326
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.69 E-value=0.1 Score=52.11 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 035550 146 VIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.|.|+|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 327
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.67 E-value=0.12 Score=52.77 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+|+|.|++|+||||+|+.+..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 328
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.62 E-value=0.098 Score=53.48 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999875
No 329
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.61 E-value=0.11 Score=53.15 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 330
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.60 E-value=0.13 Score=51.92 Aligned_cols=24 Identities=17% Similarity=0.469 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 346899999999999999999885
No 331
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=90.57 E-value=1.1 Score=51.29 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...+|.++|.+|+||||++..++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998886
No 332
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.57 E-value=0.13 Score=50.41 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.++++|+|..|+|||||+..+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999887
No 333
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.55 E-value=0.13 Score=55.12 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 334
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.48 E-value=0.12 Score=53.23 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 035550 146 VIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
+|+|+|+.|+||||+|+.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999876
No 335
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.43 E-value=0.13 Score=54.10 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999876
No 336
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.43 E-value=0.15 Score=51.62 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+|+|.|+.|+||||+|+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999985
No 337
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.37 E-value=0.15 Score=51.10 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+|+|+|+.|+||||+|+.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 338
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.33 E-value=0.1 Score=52.10 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999886
No 339
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.30 E-value=0.15 Score=56.10 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...+|+|+|..|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 457999999999999999999876
No 340
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.29 E-value=0.14 Score=52.50 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+|.|+|++|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999886
No 341
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=90.24 E-value=0.15 Score=51.84 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 342
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.20 E-value=0.14 Score=51.66 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999886
No 343
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.18 E-value=0.13 Score=50.88 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 035550 146 VIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999886
No 344
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=90.15 E-value=0.17 Score=54.19 Aligned_cols=51 Identities=27% Similarity=0.294 Sum_probs=32.3
Q ss_pred CeeeechhHHHHHHHHHhcCCcC------CCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 117 AKVYGRETEKKEIVELLLRDDLR------NDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
.+++|.++.+.++.+....-... +-.-.+-+.|+|++|+||||||+.++..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45788887666665543211000 0000112889999999999999999973
No 345
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=90.11 E-value=0.11 Score=58.82 Aligned_cols=44 Identities=18% Similarity=0.281 Sum_probs=32.0
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+++|.+..++.+...+.... ..-|.|+|.+|+|||++|+.+++
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHH
Confidence 358899887666544443221 12388999999999999999987
No 346
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.01 E-value=0.15 Score=52.67 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999876
No 347
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.98 E-value=0.15 Score=52.84 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+|.|.|++|+||||+|+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 348
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=89.94 E-value=0.15 Score=54.38 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+|+|+|+.|+||||+++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999984
No 349
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.89 E-value=0.17 Score=53.71 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+|+|.|..|+||||||+.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999875
No 350
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=89.88 E-value=1 Score=49.85 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 126 KKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 126 ~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
--++++.+..- .+...++|+|.+|+|||+|++++.+.
T Consensus 162 GiraID~l~Pi-----grGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 162 STRLIDLFAPI-----GKGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp HHHHHHHHSCC-----BTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred cchhhhhcccc-----cCCceEEEecCCCCChhHHHHHHHHH
Confidence 34566766433 23457899999999999999998873
No 351
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.84 E-value=0.56 Score=51.12 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...+++|+|.+|+||||++..++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999886
No 352
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.80 E-value=0.23 Score=52.67 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+|+|.|++|+||||+|+.+..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 353
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.78 E-value=0.14 Score=52.52 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+|+|.|++|+||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 354
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=89.77 E-value=0.21 Score=50.01 Aligned_cols=38 Identities=13% Similarity=0.098 Sum_probs=27.4
Q ss_pred hHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 124 TEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 124 ~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.-+..+..++... ++...+.|+|++|+||||+|..+++
T Consensus 43 ~f~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 43 TFLGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHH
Confidence 3355566666431 2334689999999999999988887
No 355
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.75 E-value=0.18 Score=52.94 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
...+|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998863
No 356
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.71 E-value=0.13 Score=53.39 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 357
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.70 E-value=0.74 Score=50.81 Aligned_cols=25 Identities=36% Similarity=0.410 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
....+++|+|+.|+||||+++.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999999886
No 358
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=89.68 E-value=0.17 Score=55.38 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...+|+|+|++|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999999886
No 359
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=89.67 E-value=0.59 Score=50.92 Aligned_cols=88 Identities=16% Similarity=0.107 Sum_probs=45.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCC-HHHHHHHHHHHhcCCCC--CCccCHHHHHHHHHhH
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFD-VIRLTKSILLSIASDQI--VDNHDLNKLQEELKKK 220 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~l~~~ 220 (1385)
..+++++|.+|+||||++..++.. ....-..+.++....... ..+.++...+..+..-. ....+...+.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 679999999999999999988863 222223455555443222 22223333443332211 0123444443333333
Q ss_pred cCCCeE-EEEEecC
Q 035550 221 LSPKKF-LLVLDDV 233 (1385)
Q Consensus 221 l~~~~~-LlVlDdv 233 (1385)
++.++| ++|+|=.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 331223 6778865
No 360
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.64 E-value=0.33 Score=49.44 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 035550 146 VIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 361
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=89.64 E-value=0.16 Score=54.13 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999985
No 362
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=89.61 E-value=0.16 Score=52.54 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...+++|+|+.|+|||||++.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999876
No 363
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.56 E-value=0.11 Score=52.32 Aligned_cols=22 Identities=36% Similarity=0.374 Sum_probs=16.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+|.|.|+.|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 364
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.56 E-value=0.15 Score=51.85 Aligned_cols=21 Identities=43% Similarity=0.692 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 035550 146 VIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 365
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=89.52 E-value=0.75 Score=54.83 Aligned_cols=54 Identities=9% Similarity=-0.040 Sum_probs=36.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHh
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSI 199 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~ 199 (1385)
...++.|.|.+|+||||+|.+++.+...+ +=..++|++... +..++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 34688999999999999999988642221 123577776543 5667777665443
No 366
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=89.44 E-value=0.21 Score=57.25 Aligned_cols=22 Identities=45% Similarity=0.517 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+.++|++|+|||++|+.+++
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999987
No 367
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.20 E-value=0.17 Score=52.87 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..|.|.|++|+||||+|+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999986
No 368
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=89.19 E-value=0.75 Score=52.85 Aligned_cols=54 Identities=22% Similarity=0.212 Sum_probs=39.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCC-CHHHHHHHHHHH
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF-DVIRLTKSILLS 198 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 198 (1385)
-..++|+|..|+|||+|++++.+.. .+.+-+.++++-+.+.. ...++.+++.+.
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred CCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 4578999999999999999988731 12344678888888765 355666666553
No 369
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.07 E-value=0.21 Score=51.73 Aligned_cols=23 Identities=30% Similarity=0.267 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+|.|.|+.|+||||+|+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999886
No 370
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.03 E-value=0.51 Score=47.86 Aligned_cols=49 Identities=20% Similarity=0.189 Sum_probs=29.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 146 VIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
.|+|-|.-|+||||.++.+++. .+..-..+++..-.......+..+.++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~--L~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY--LEKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 4778899999999999999873 333333344443333333334444443
No 371
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.01 E-value=0.21 Score=54.21 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHh
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVY 165 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~ 165 (1385)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999987
No 372
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=88.97 E-value=0.88 Score=53.27 Aligned_cols=51 Identities=16% Similarity=0.135 Sum_probs=34.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSIL 196 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 196 (1385)
...++.|.|.+|+||||+|..++...... .-..++|++... +..++...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 34689999999999999999988742221 123577776543 4556665554
No 373
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=88.94 E-value=1.8 Score=50.78 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=21.0
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...++|+|+|.+|+||||++..++.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999885
No 374
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=88.92 E-value=1.1 Score=51.20 Aligned_cols=54 Identities=22% Similarity=0.257 Sum_probs=38.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCC-CHHHHHHHHHHH
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF-DVIRLTKSILLS 198 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 198 (1385)
-..++|+|..|+|||+|++++.+.. .+.+-+.++++-+.+.. ...++.+++.+.
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4678999999999999999988732 12234567778787764 355666666654
No 375
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=88.90 E-value=0.57 Score=51.59 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
....+|+|+|.+|+||||++..++.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999886
No 376
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.83 E-value=0.79 Score=53.50 Aligned_cols=54 Identities=17% Similarity=0.075 Sum_probs=36.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHh
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSI 199 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~ 199 (1385)
...++.|.|.+|+||||+|..++...... .=..++|++.. .+..++...++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 34689999999999999999988642211 12357776654 45666777665443
No 377
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=88.82 E-value=0.14 Score=50.45 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 378
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=88.81 E-value=0.18 Score=52.36 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 379
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=88.80 E-value=0.17 Score=52.37 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 380
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=88.69 E-value=0.31 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+++|+|+.|+|||||++.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999986
No 381
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.69 E-value=0.19 Score=50.67 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 035550 146 VIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
+++|+|+.|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998863
No 382
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=88.64 E-value=0.2 Score=52.13 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 035550 146 VIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 383
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=88.50 E-value=0.18 Score=53.42 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 384
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=88.49 E-value=0.42 Score=52.67 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 385
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=88.45 E-value=0.21 Score=52.43 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..|.|.|++|+||||+|+.+..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 386
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=88.44 E-value=0.22 Score=51.94 Aligned_cols=41 Identities=22% Similarity=0.199 Sum_probs=29.4
Q ss_pred echhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 121 GRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 121 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
+.++..+.+.+.+... ..++|+|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~------~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRES------GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHHH------TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhccc------CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445555555554322 4579999999999999999988763
No 387
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=88.38 E-value=0.093 Score=58.85 Aligned_cols=112 Identities=13% Similarity=0.173 Sum_probs=59.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhHcCCC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELKKKLSPK 224 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 224 (1385)
.+++|+|+.|.||||+.+.+... ........++ .+.++.... .......+.... ...+.....+.+...|...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i~-t~ed~~e~~--~~~~~~~v~q~~--~~~~~~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHIL-TIEDPIEFV--HESKKCLVNQRE--VHRDTLGFSEALRSALRED 196 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEEE-EEESSCCSC--CCCSSSEEEEEE--BTTTBSCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEEE-EccCcHHhh--hhccccceeeee--eccccCCHHHHHHHHhhhC
Confidence 49999999999999999988762 2111122222 222211100 000000000000 0011122445788888888
Q ss_pred eEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchhHhh
Q 035550 225 KFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQGVAA 268 (1385)
Q Consensus 225 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 268 (1385)
+=+|++|.+. +.+.++.+.... ..|..|++|+-..+.+.
T Consensus 197 PdvillDEp~--d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 197 PDIILVGEMR--DLETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred cCEEecCCCC--CHHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 8899999994 334444433322 24566888888766553
No 388
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.37 E-value=0.21 Score=51.90 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 035550 146 VIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 389
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.34 E-value=0.25 Score=53.97 Aligned_cols=24 Identities=38% Similarity=0.426 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...+++|+|+.|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999999886
No 390
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.26 E-value=0.17 Score=52.54 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..|.|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999986
No 391
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=88.24 E-value=0.12 Score=53.61 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 035550 146 VIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
+|+|.|..|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 392
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=88.18 E-value=0.27 Score=51.09 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+|+|.|+.|+||||+|+.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999874
No 393
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=88.18 E-value=0.22 Score=51.18 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
.+|+|.|+.|+||||+|+.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999873
No 394
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.18 E-value=0.3 Score=66.24 Aligned_cols=84 Identities=20% Similarity=0.098 Sum_probs=54.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCC----CCccCHHHHHHHHH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQI----VDNHDLNKLQEELK 218 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~l~ 218 (1385)
..+.|.|+|++|+|||+||.++... ....=..++|+.+...++... ++.++.+-. ......++..+.++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 4578999999999999999999873 333334578888877777665 334432110 01223345555555
Q ss_pred hHcC-CCeEEEEEecC
Q 035550 219 KKLS-PKKFLLVLDDV 233 (1385)
Q Consensus 219 ~~l~-~~~~LlVlDdv 233 (1385)
+..+ .+.-+||+|.+
T Consensus 1499 ~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHHHTCCSEEEESCG
T ss_pred HHHhcCCCCEEEEcCh
Confidence 4442 56679999998
No 395
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=88.14 E-value=0.18 Score=52.72 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..|.|.|++|+||||+|+.++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999986
No 396
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.11 E-value=0.29 Score=53.65 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
..+|.|+|+.|+||||||..++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 397
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.10 E-value=0.24 Score=52.11 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+++|+|+.|+|||||.+.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999986
No 398
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=88.02 E-value=0.26 Score=54.21 Aligned_cols=22 Identities=36% Similarity=0.371 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+|+|.|+.|+||||||+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999886
No 399
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=87.96 E-value=0.35 Score=51.66 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+++|+|+.|+|||||.+.++.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 400
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=87.95 E-value=0.34 Score=52.01 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+++|+|+.|+|||||++.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999986
No 401
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=87.92 E-value=0.26 Score=51.25 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+|+|.|++|+||||+|+.+..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 402
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=87.87 E-value=0.32 Score=57.19 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 035550 146 VIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
.+.|.|.+|+||||++..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 8899999999999999988863
No 403
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=87.87 E-value=0.26 Score=48.67 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..++++|+|..|+|||||+..+..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHH
Confidence 357899999999999999999886
No 404
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=87.86 E-value=0.27 Score=56.34 Aligned_cols=50 Identities=26% Similarity=0.383 Sum_probs=35.2
Q ss_pred CeeeechhHHHHHHHHHhcC--------CcCCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 117 AKVYGRETEKKEIVELLLRD--------DLRNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..++|.++.++.+...+... ........+-|.++|++|+||||+|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 45789888888887666321 000111234588999999999999999987
No 405
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.81 E-value=0.35 Score=49.01 Aligned_cols=25 Identities=36% Similarity=0.347 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999998864
No 406
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=87.73 E-value=1.4 Score=50.99 Aligned_cols=51 Identities=14% Similarity=0.122 Sum_probs=33.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILL 197 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 197 (1385)
...++.|.|.+|+||||+|.+++.+...+ =..++|++.- .+..++...++.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlE--ms~~ql~~R~~~ 246 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE--MGKKENIKRLIV 246 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSS--SCTTHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECC--CCHHHHHHHHHH
Confidence 34689999999999999999988743222 2346666543 344455555543
No 407
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.72 E-value=0.25 Score=52.68 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+++|+|+.|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46999999999999999998873
No 408
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=87.72 E-value=0.41 Score=51.23 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+++|+|+.|+|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999986
No 409
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=87.69 E-value=0.25 Score=50.98 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 035550 146 VIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999976
No 410
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=87.58 E-value=0.57 Score=54.15 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=29.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCC
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFD 187 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 187 (1385)
....+++|+|..|+|||||++.++.- .. .-...+++...+.+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl--l~-~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ--FE-QQGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH--HH-HTTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH--hh-hcCCeEEEecCcccc
Confidence 34679999999999999999998862 22 223445554444443
No 411
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=87.52 E-value=0.26 Score=51.35 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+++|+|+.|+|||||.+.++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 412
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=87.49 E-value=0.5 Score=53.29 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 126 KKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 126 ~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..++.+.+... ..+..+|+|+|.+|+||||++..+..
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHH
Confidence 44555555332 23568999999999999999998865
No 413
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=87.47 E-value=0.29 Score=51.46 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
..+++|+|+.|+|||||++.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999863
No 414
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=87.43 E-value=0.51 Score=54.28 Aligned_cols=84 Identities=25% Similarity=0.229 Sum_probs=49.1
Q ss_pred cEEEEEEcCCCChHHHHH-HHHhcCccccccCCc-EEEEEeCCCC-CHHHHHHHHHHHhcCCCC-----CCccC--HH--
Q 035550 144 FSVIPIIGMGGLGKTTLA-QLVYNDKQVQDHFDL-KAWTCVSDDF-DVIRLTKSILLSIASDQI-----VDNHD--LN-- 211 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~~~~~~~-----~~~~~--~~-- 211 (1385)
-..++|+|..|+|||+|| .++.+.. .-+. ++++-+.+.. ...++.+.+.+.=..+.. ..... ..
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~ 237 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYL 237 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHH
Confidence 456889999999999996 4677632 2343 4667777764 344555555542111100 01111 11
Q ss_pred ------HHHHHHHhHcCCCeEEEEEecC
Q 035550 212 ------KLQEELKKKLSPKKFLLVLDDV 233 (1385)
Q Consensus 212 ------~~~~~l~~~l~~~~~LlVlDdv 233 (1385)
.+.+.++. +++.+|+++||+
T Consensus 238 a~~~a~tiAEyfrd--~G~dVLl~~Dsl 263 (502)
T 2qe7_A 238 APYAGCAMGEYFMY--KGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHHT--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 12333443 589999999998
No 415
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=87.25 E-value=0.2 Score=52.63 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=16.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHh-c
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVY-N 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~-~ 166 (1385)
..+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3589999999999999999998 5
No 416
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=87.17 E-value=0.29 Score=53.51 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+|.|+|+.|+||||||+.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 417
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.14 E-value=0.28 Score=50.09 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 035550 146 VIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
+|.|.|++|+||+|.|+.++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577899999999999999886
No 418
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.12 E-value=0.27 Score=51.26 Aligned_cols=21 Identities=43% Similarity=0.507 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 035550 146 VIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 419
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.11 E-value=0.42 Score=50.54 Aligned_cols=22 Identities=45% Similarity=0.735 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+++|+|+.|+|||||++.++.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 420
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.10 E-value=0.24 Score=50.77 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+++|+|+.|+|||||++.++.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999875
No 421
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.10 E-value=0.33 Score=48.31 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
+.|.|.|+.|+||||||.++...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999873
No 422
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.05 E-value=0.43 Score=50.65 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+++|+|+.|+|||||.+.++.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 423
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=87.02 E-value=0.31 Score=52.54 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
++|.|+|+.|+||||||..++.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHH
Confidence 6899999999999999999986
No 424
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=87.02 E-value=0.36 Score=51.04 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+++|+|+.|+|||||++.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 425
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=86.94 E-value=0.32 Score=51.91 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+++|+|+.|+|||||++.++.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 46899999999999999999986
No 426
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=86.94 E-value=0.36 Score=51.89 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=21.8
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
....++.+.|.||+||||++..++.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3467889999999999999999875
No 427
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=86.90 E-value=0.69 Score=50.71 Aligned_cols=50 Identities=14% Similarity=0.134 Sum_probs=31.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCC-cEEEEEeCCCCCHHHHHHHHHH
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFD-LKAWTCVSDDFDVIRLTKSILL 197 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~ 197 (1385)
..+++|+|.+|+|||||++.++..... .-. .++|+.... +..++.+.+..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCcC--CHHHHHHHHHH
Confidence 468999999999999999998863221 112 455665432 34444444433
No 428
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=86.90 E-value=0.52 Score=49.23 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
...+|.|.|+.|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999873
No 429
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=86.87 E-value=0.45 Score=51.14 Aligned_cols=23 Identities=39% Similarity=0.561 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+++|+|+.|+|||||++.++.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999986
No 430
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=86.87 E-value=0.32 Score=59.46 Aligned_cols=43 Identities=26% Similarity=0.299 Sum_probs=36.0
Q ss_pred CeeeechhHHHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 117 AKVYGRETEKKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 117 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
..++|.+..++.+...+... ..+.|+|++|+||||||+.++.-
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46899999888888777543 47899999999999999999873
No 431
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=86.80 E-value=0.35 Score=54.01 Aligned_cols=24 Identities=38% Similarity=0.426 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...+++|+|..|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 467999999999999999999886
No 432
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=86.77 E-value=0.28 Score=50.85 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 035550 146 VIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 433
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=86.77 E-value=0.55 Score=51.84 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=28.9
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCC
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD 185 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 185 (1385)
...++|+|+|-||+||||+|..++.- ....=..+.-|.+...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~~ 80 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDPK 80 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESSS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCCC
Confidence 35689999999999999999888762 2222234666666543
No 434
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=86.75 E-value=0.78 Score=56.89 Aligned_cols=52 Identities=27% Similarity=0.209 Sum_probs=36.5
Q ss_pred CCeeeechhHHHHHHHHHhcCCc-------CCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 116 EAKVYGRETEKKEIVELLLRDDL-------RNDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
-.++.|.++.+++|.+.+.-.-. -+....+-|.++|++|.|||.+|+++++.
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 34577888888888776543211 01123345789999999999999999984
No 435
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=86.68 E-value=0.28 Score=50.44 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+++|+|+.|+|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 436
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=86.60 E-value=0.28 Score=53.36 Aligned_cols=52 Identities=27% Similarity=0.259 Sum_probs=33.1
Q ss_pred CCeeeechhHHHHHHHHHhcCCc------CCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 116 EAKVYGRETEKKEIVELLLRDDL------RNDGEFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 116 ~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
-.+++|.++.++++.+....-.. -+-.-.+-+.|+|++|+||||||+.++..
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 34678888776666554422100 00000112889999999999999999873
No 437
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.54 E-value=0.34 Score=51.08 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+++|+|+.|+|||||.+.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 438
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=86.50 E-value=0.38 Score=51.81 Aligned_cols=24 Identities=29% Similarity=0.224 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..++|.|+|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 357899999999999999999986
No 439
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=86.49 E-value=0.33 Score=48.79 Aligned_cols=22 Identities=41% Similarity=0.527 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 035550 146 VIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
-|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 440
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=86.36 E-value=0.35 Score=51.63 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+++|+|+.|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 441
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=86.36 E-value=0.33 Score=51.11 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..|.|.|+.|+||||+|+.+..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999986
No 442
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=86.33 E-value=0.35 Score=50.51 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+++|+|+.|+|||||.+.++.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 443
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=86.31 E-value=0.41 Score=47.06 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 444
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=86.25 E-value=0.36 Score=51.49 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+++|+|+.|+|||||++.+..
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999987
No 445
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=86.18 E-value=0.35 Score=52.57 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...+++|+|+.|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 346899999999999999999876
No 446
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=86.18 E-value=0.92 Score=54.60 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=52.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHHH-hHcC-
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIVDNHDLNKLQEELK-KKLS- 222 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~-~~l~- 222 (1385)
+++.|.|.+|.||||++..+.... ... ...+.+....... .+.+.+.++.. ..+...+..... ....
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l--~~~-g~~Vl~~ApT~~A----a~~L~e~~~~~----a~Tih~ll~~~~~~~~~~ 273 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLA--ESL-GLEVGLCAPTGKA----ARRLGEVTGRT----ASTVHRLLGYGPQGFRHN 273 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH--HHT-TCCEEEEESSHHH----HHHHHHHHTSC----EEEHHHHTTEETTEESCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH--Hhc-CCeEEEecCcHHH----HHHhHhhhccc----HHHHHHHHcCCcchhhhh
Confidence 588899999999999999887632 111 2234444333221 22222222211 112211110000 0000
Q ss_pred ----CCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEcc
Q 035550 223 ----PKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTAR 262 (1385)
Q Consensus 223 ----~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR 262 (1385)
.+--+||+|.+..-+...+..+...++ .+.++|+.--
T Consensus 274 ~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD 314 (574)
T 3e1s_A 274 HLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGD 314 (574)
T ss_dssp SSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEEC
T ss_pred hcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEec
Confidence 122389999986555555666665554 4567766543
No 447
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=86.15 E-value=0.36 Score=51.22 Aligned_cols=22 Identities=32% Similarity=0.600 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+++|+|+.|+|||||++.++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 448
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=86.08 E-value=0.42 Score=50.09 Aligned_cols=25 Identities=28% Similarity=0.150 Sum_probs=22.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 142 GEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 142 ~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
....+|+|.|..|+||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999999886
No 449
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=86.05 E-value=0.2 Score=54.60 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=18.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+|+|.|..|+||||+|+.+..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 450
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=86.04 E-value=0.38 Score=51.63 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+++|+|+.|+|||||++.++.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999987
No 451
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=85.83 E-value=0.38 Score=50.82 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+++|+|+.|+|||||.+.++.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999987
No 452
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=85.76 E-value=0.38 Score=55.52 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...+|.|+|++|+||||+|+.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999886
No 453
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=85.76 E-value=0.36 Score=53.16 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999886
No 454
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=85.68 E-value=0.38 Score=48.76 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999998764
No 455
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=85.64 E-value=0.41 Score=51.36 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+++|+|+.|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999986
No 456
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=85.56 E-value=0.83 Score=52.59 Aligned_cols=84 Identities=23% Similarity=0.243 Sum_probs=49.1
Q ss_pred cEEEEEEcCCCChHHHHH-HHHhcCccccccCCc-EEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCCccCHH--
Q 035550 144 FSVIPIIGMGGLGKTTLA-QLVYNDKQVQDHFDL-KAWTCVSDDF-DVIRLTKSILLSIASD-------QIVDNHDLN-- 211 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~~~~~-------~~~~~~~~~-- 211 (1385)
-..++|+|..|+|||+|| .++.+.. .-+. ++++-+.+.. .+.++.+.+.+.=..+ ...+.....
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 356889999999999996 5777742 2343 4667777764 3455555554421110 100111111
Q ss_pred ------HHHHHHHhHcCCCeEEEEEecC
Q 035550 212 ------KLQEELKKKLSPKKFLLVLDDV 233 (1385)
Q Consensus 212 ------~~~~~l~~~l~~~~~LlVlDdv 233 (1385)
.+.+.++. +++.+|+++||+
T Consensus 251 a~~~a~tiAEyfrd--~G~dVLli~Dsl 276 (515)
T 2r9v_A 251 APYAGCAMGEYFAY--SGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHHT--TTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHH--cCCcEEEEeccH
Confidence 12333443 589999999998
No 457
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=85.53 E-value=0.76 Score=47.00 Aligned_cols=37 Identities=14% Similarity=0.067 Sum_probs=24.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCC
Q 035550 146 VIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD 184 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 184 (1385)
.|.+.|.||+||||+|..++... ....++ +..+.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l-~~~G~~-V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ-LRQGVR-VMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH-HHTTCC-EEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-HHCCCC-EEEEEeCC
Confidence 47789999999999998887632 222333 44445544
No 458
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=85.52 E-value=0.46 Score=50.44 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=27.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD 184 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 184 (1385)
..++.|.|.+|+||||+|.+++.. ....-..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 468999999999999999888653 222224577776544
No 459
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=85.50 E-value=0.41 Score=50.84 Aligned_cols=22 Identities=32% Similarity=0.718 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+++|+|+.|+|||||.+.++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 460
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=85.43 E-value=0.48 Score=50.57 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+++|+|+.|+||||+++.+..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 46999999999999999999876
No 461
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=85.40 E-value=0.3 Score=55.46 Aligned_cols=90 Identities=12% Similarity=0.211 Sum_probs=49.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccc--------ccCC-cEEEEEeCCCC-CHHHHHHHHHHH--hcCC----CCCCc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQ--------DHFD-LKAWTCVSDDF-DVIRLTKSILLS--IASD----QIVDN 207 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~i~~~--~~~~----~~~~~ 207 (1385)
-..++|.|..|+|||+|+.++++..... ++-+ .++++-+.+.. ...++.+++.+. +... ...+.
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 3467899999999999999998753321 1111 45666666653 345555554432 1000 00011
Q ss_pred cCHHH-----HHHHHHhHc---CCCeEEEEEecC
Q 035550 208 HDLNK-----LQEELKKKL---SPKKFLLVLDDV 233 (1385)
Q Consensus 208 ~~~~~-----~~~~l~~~l---~~~~~LlVlDdv 233 (1385)
..... ..-.+-+++ +++.+|+++||+
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 11111 112233443 378999999998
No 462
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=85.33 E-value=0.41 Score=51.59 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+++|+|+.|+|||||++.++.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999986
No 463
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=85.28 E-value=0.48 Score=53.84 Aligned_cols=87 Identities=15% Similarity=0.230 Sum_probs=49.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCC----cEEEEEeCCCC-CHHHHHHHHHHHhcCC-CC----CCccCH-HH-
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFD----LKAWTCVSDDF-DVIRLTKSILLSIASD-QI----VDNHDL-NK- 212 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~----~~~wv~~~~~~-~~~~~~~~i~~~~~~~-~~----~~~~~~-~~- 212 (1385)
..++|.|..|+|||+|+.++++.... +-+ .++++-+.+.. ...++.+++.+.=..+ .. ...... ..
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 45789999999999999999874332 112 55666666653 3555666554421010 00 011111 11
Q ss_pred ----HHHHHHhHc---CCCeEEEEEecC
Q 035550 213 ----LQEELKKKL---SPKKFLLVLDDV 233 (1385)
Q Consensus 213 ----~~~~l~~~l---~~~~~LlVlDdv 233 (1385)
..-.+-+++ +++.+|+++||+
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 111233343 379999999998
No 464
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=84.97 E-value=0.48 Score=46.13 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
+-|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998764
No 465
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=84.94 E-value=1.1 Score=46.03 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
..+|.|.|+.|+||||+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 466
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=84.93 E-value=0.41 Score=52.21 Aligned_cols=23 Identities=26% Similarity=0.610 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+++|+|+.|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 46899999999999999999976
No 467
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=84.86 E-value=0.43 Score=48.69 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999998864
No 468
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=84.74 E-value=0.45 Score=53.57 Aligned_cols=24 Identities=29% Similarity=0.163 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...+++|+|+.|+|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346999999999999999999986
No 469
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=84.67 E-value=0.48 Score=49.94 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...+|+|+|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999886
No 470
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=84.51 E-value=1.2 Score=60.55 Aligned_cols=85 Identities=21% Similarity=0.092 Sum_probs=55.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCC----CCccCHHHHHHHHH
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQI----VDNHDLNKLQEELK 218 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~l~ 218 (1385)
..+++.|.|.+|+||||||.+++.. ....-..++|++.....+... ++.++.... ....+.+++.+.++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~--~a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 3569999999999999999999873 322234688888777766542 444443211 02345566666665
Q ss_pred hHc-CCCeEEEEEecCC
Q 035550 219 KKL-SPKKFLLVLDDVW 234 (1385)
Q Consensus 219 ~~l-~~~~~LlVlDdv~ 234 (1385)
... +.+.-+||+|-+.
T Consensus 455 ~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCcEEEECCHH
Confidence 444 2455699999983
No 471
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=84.47 E-value=0.58 Score=53.90 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
...+|+|+|.+|+||||+|..++..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999988763
No 472
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=84.25 E-value=0.46 Score=51.62 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..++.|+|.+|+||||||..++.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999998875
No 473
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=84.20 E-value=1.2 Score=59.88 Aligned_cols=82 Identities=22% Similarity=0.135 Sum_probs=0.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CccCHHHHHHHHHhH
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIV----DNHDLNKLQEELKKK 220 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~l~~~ 220 (1385)
+++.|.|.+|+||||||.+++. .....=..++|++.....+... ++.++..... ...+.+++.+.++..
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~--~~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~l 456 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH--HHHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHHH
Q ss_pred c-CCCeEEEEEecC
Q 035550 221 L-SPKKFLLVLDDV 233 (1385)
Q Consensus 221 l-~~~~~LlVlDdv 233 (1385)
. +.+.-+||+|-+
T Consensus 457 v~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 457 ARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHTCCSEEEESCS
T ss_pred HHhcCCCEEEECCH
No 474
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=84.19 E-value=0.81 Score=49.30 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=26.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD 185 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 185 (1385)
++|+|.|-||+||||+|..++.- ....=..+.-|+....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~--la~~G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG--LHAMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHH--HHHCCCcEEEEcCCCC
Confidence 57888899999999999888763 2222234566665543
No 475
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=83.95 E-value=0.52 Score=50.22 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+++|+|+.|+|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999986
No 476
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=83.90 E-value=0.62 Score=46.87 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999874
No 477
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=83.71 E-value=0.72 Score=45.80 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
+...|+|+|.+|+|||||+..+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4467889999999999999998764
No 478
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=83.56 E-value=0.58 Score=46.36 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
--|+|+|.+|+|||||+..+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46889999999999999998764
No 479
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=83.45 E-value=0.53 Score=50.53 Aligned_cols=21 Identities=38% Similarity=0.749 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 035550 146 VIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999986
No 480
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=83.30 E-value=0.55 Score=50.84 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+++|+|..|+|||||.+.+..
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999986
No 481
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=83.24 E-value=0.83 Score=52.64 Aligned_cols=84 Identities=18% Similarity=0.182 Sum_probs=48.3
Q ss_pred cEEEEEEcCCCChHHHHH-HHHhcCccccccCC-cEEEEEeCCCCC-HHHHHHHHHHHhcCC-------CCCCcc-----
Q 035550 144 FSVIPIIGMGGLGKTTLA-QLVYNDKQVQDHFD-LKAWTCVSDDFD-VIRLTKSILLSIASD-------QIVDNH----- 208 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~i~~~~~~~-------~~~~~~----- 208 (1385)
-..++|+|..|+|||+|| .++.+.. .-+ .++++-+.+... ..++.+.+.+.=..+ ...+..
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 356789999999999995 5777742 234 346777777543 344444443311000 000100
Q ss_pred ---CHHHHHHHHHhHcCCCeEEEEEecC
Q 035550 209 ---DLNKLQEELKKKLSPKKFLLVLDDV 233 (1385)
Q Consensus 209 ---~~~~~~~~l~~~l~~~~~LlVlDdv 233 (1385)
..-.+.+.++. +++.+|+++||+
T Consensus 239 a~~~a~tiAEyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 239 APYTGAALAEYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 01123444554 599999999998
No 482
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=83.08 E-value=0.51 Score=46.12 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 035550 146 VIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 483
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=83.07 E-value=0.57 Score=49.53 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..|+|.|..|+||||+|+.+..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999999986
No 484
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=82.89 E-value=1.1 Score=46.04 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
...+|.|.|+.|+||||+++.+.+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 485
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=82.79 E-value=2.4 Score=49.16 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=35.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCC-HHHHHHHH
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFD-VIRLTKSI 195 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i 195 (1385)
-..++|.|..|+|||+|++++++. .+-+.++++-+.+... ..++.+++
T Consensus 227 Gqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 227 GGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp TCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred CCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 457899999999999999998863 2235677888887765 44444443
No 486
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=82.69 E-value=1 Score=47.49 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCcCCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 035550 126 KKEIVELLLRDDLRNDGEFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 126 ~~~l~~~L~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...+..++... .++...|.++|++|.|||.+|..+++
T Consensus 90 ~~~l~~~l~~~----~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 90 ASVFLGWATKK----FGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHHTTC----STTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCC----CCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 34456666432 12345799999999999999999987
No 487
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=82.69 E-value=0.98 Score=49.27 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=27.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD 185 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 185 (1385)
++|+|.|-||+||||+|..++.- ....=..+.-|+....
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~--La~~G~rVlliD~D~q 41 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAA--LAEMGKKVMIVGCDPK 41 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEEECSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHH--HHHCCCeEEEEecCCC
Confidence 67888999999999999888763 2222224556665543
No 488
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=82.65 E-value=0.64 Score=51.78 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
..+++|+|+.|+|||||.+.+..
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHhc
Confidence 46899999999999999999976
No 489
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=82.62 E-value=0.6 Score=45.73 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 035550 146 VIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 146 vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
-|+|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4779999999999999998753
No 490
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=82.60 E-value=0.64 Score=45.71 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
--|+|+|.+|+|||||+..+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999864
No 491
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=82.57 E-value=0.72 Score=45.22 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
--|.|+|.+|+|||||+..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999998764
No 492
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=82.56 E-value=0.44 Score=54.51 Aligned_cols=54 Identities=11% Similarity=0.084 Sum_probs=35.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccc--CCcEEEEEeCCCC-CHHHHHHHHHH
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDH--FDLKAWTCVSDDF-DVIRLTKSILL 197 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~i~~ 197 (1385)
-..++|.|..|+|||+|+.+++++....+. =+.++++-+.+.. ...++.+++..
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~ 208 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEK 208 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHh
Confidence 356788999999999999999875433111 1345666666653 35566666654
No 493
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=82.52 E-value=0.63 Score=52.21 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
.+|+|.|+.|+||||||..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5899999999999999999886
No 494
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=82.52 E-value=0.8 Score=51.34 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
...+|+|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999999875
No 495
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=82.51 E-value=0.84 Score=50.76 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYN 166 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~ 166 (1385)
-.+++|+|+.|.|||||.+.++.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 35899999999999999999986
No 496
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=82.50 E-value=0.62 Score=46.99 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
--|.|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999999764
No 497
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=82.50 E-value=1 Score=46.63 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=18.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
...|.|.|+.|+||||+++.+++.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 498
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=82.45 E-value=0.97 Score=45.81 Aligned_cols=111 Identities=12% Similarity=-0.036 Sum_probs=51.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCcEEEEEeCCCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHHHHhHcC
Q 035550 144 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQIV-DNHDLNKLQEELKKKLS 222 (1385)
Q Consensus 144 ~~vv~i~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~l~~~l~ 222 (1385)
..+..++|.-|.||||.|...+... ...-..++.+.... +.+.-...++..++..... ...+.+ .+.+.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~--~~~g~kVli~k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~~ 99 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRT--QFAKQHAIVFKPCI--DNRYSEEDVVSHNGLKVKAVPVSASK----DIFKHIT 99 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH--HHTTCCEEEEECC-------------------CCEEECSSGG----GGGGGCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH--HHCCCEEEEEEecc--CCcchHHHHHhhcCCeeEEeecCCHH----HHHHHHh
Confidence 4688899999999999988877632 22222233333221 1111122333333322110 011111 2333333
Q ss_pred CCeEEEEEecCCCCCccccccccCcccCCCCCcEEEEEccchh
Q 035550 223 PKKFLLVLDDVWNENYNDWDRLRPPFEAGAPGSKIIVTARNQG 265 (1385)
Q Consensus 223 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 265 (1385)
++-=+|++|.+..-+.+..+.+.. +.+ .|-.||+|-++.+
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l~~-l~~--~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVVQV-LAN--RGYRVIVAGLDQD 139 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHHHH-HHH--TTCEEEEEECSBC
T ss_pred cCCCEEEEECcccCCHHHHHHHHH-Hhh--CCCEEEEEecccc
Confidence 333399999985433233433322 222 3678999999653
No 499
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=82.35 E-value=0.6 Score=51.68 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 035550 143 EFSVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 143 ~~~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
..++++|+|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4689999999999999999999853
No 500
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=82.34 E-value=0.72 Score=45.64 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 035550 145 SVIPIIGMGGLGKTTLAQLVYND 167 (1385)
Q Consensus 145 ~vv~i~G~gGiGKTtLa~~v~~~ 167 (1385)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999864
Done!