Query 035554
Match_columns 562
No_of_seqs 174 out of 1957
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 04:00:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035554.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035554hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1237 H+/oligopeptide sympor 100.0 1.4E-44 3E-49 386.6 37.2 523 18-551 17-569 (571)
2 COG3104 PTR2 Dipeptide/tripept 100.0 1.3E-38 2.7E-43 324.2 31.3 459 25-547 11-492 (498)
3 PRK10207 dipeptide/tripeptide 100.0 2.8E-35 6.1E-40 315.0 42.6 455 31-548 10-482 (489)
4 TIGR00924 yjdL_sub1_fam amino 100.0 5.4E-34 1.2E-38 304.9 42.1 446 31-546 6-472 (475)
5 PRK15462 dipeptide/tripeptide 100.0 1.3E-32 2.9E-37 290.3 42.8 443 32-534 6-469 (493)
6 PRK09584 tppB putative tripept 100.0 1.2E-32 2.6E-37 296.2 42.7 454 32-548 18-485 (500)
7 TIGR00926 2A1704 Peptide:H+ sy 100.0 1.6E-24 3.5E-29 236.6 41.1 334 49-423 1-342 (654)
8 PRK12382 putative transporter; 99.9 3.7E-23 8.1E-28 216.5 37.2 375 34-541 14-388 (392)
9 PRK05122 major facilitator sup 99.9 7.6E-23 1.6E-27 214.7 38.7 377 34-543 14-390 (399)
10 PRK11646 multidrug resistance 99.9 8.8E-23 1.9E-27 214.3 36.6 348 38-502 13-360 (400)
11 PRK10489 enterobactin exporter 99.9 4.3E-23 9.2E-28 218.0 33.2 398 35-557 17-414 (417)
12 PRK03545 putative arabinose tr 99.9 1.6E-22 3.4E-27 211.8 37.0 374 34-543 8-381 (390)
13 PRK10054 putative transporter; 99.9 4.9E-23 1.1E-27 215.8 31.8 174 33-237 5-178 (395)
14 PRK10504 putative transporter; 99.9 3.5E-22 7.6E-27 214.4 36.7 178 34-242 9-186 (471)
15 PRK11551 putative 3-hydroxyphe 99.9 1.1E-21 2.4E-26 206.2 37.2 176 31-237 11-186 (406)
16 COG2271 UhpC Sugar phosphate p 99.9 6.2E-23 1.3E-27 204.9 24.7 409 25-547 15-439 (448)
17 PRK11663 regulatory protein Uh 99.9 6.4E-22 1.4E-26 210.1 33.2 168 35-233 23-190 (434)
18 TIGR00893 2A0114 d-galactonate 99.9 4.7E-22 1E-26 206.8 30.9 153 57-239 15-167 (399)
19 COG2814 AraJ Arabinose efflux 99.9 8.2E-21 1.8E-25 192.3 38.2 379 31-544 9-388 (394)
20 TIGR00900 2A0121 H+ Antiporter 99.9 9.8E-22 2.1E-26 202.7 31.8 358 39-500 3-362 (365)
21 PRK14995 methyl viologen resis 99.9 1.8E-21 4E-26 210.0 34.8 380 34-500 5-412 (495)
22 PRK09874 drug efflux system pr 99.9 1.1E-20 2.4E-25 198.6 37.6 382 35-544 14-400 (408)
23 PRK11273 glpT sn-glycerol-3-ph 99.9 6.2E-21 1.3E-25 203.6 34.8 172 38-236 28-203 (452)
24 TIGR00899 2A0120 sugar efflux 99.9 1.1E-20 2.4E-25 196.2 34.8 367 41-540 3-372 (375)
25 PRK15402 multidrug efflux syst 99.9 1.9E-20 4.1E-25 197.0 36.7 342 49-499 27-368 (406)
26 PRK09556 uhpT sugar phosphate 99.9 2.8E-21 6.2E-26 207.1 30.6 179 35-238 25-209 (467)
27 PRK09705 cynX putative cyanate 99.9 1.3E-20 2.9E-25 197.3 34.2 368 47-551 21-390 (393)
28 TIGR00879 SP MFS transporter, 99.9 1.6E-21 3.5E-26 208.4 27.9 144 69-239 69-215 (481)
29 TIGR01299 synapt_SV2 synaptic 99.9 1.9E-20 4.1E-25 207.2 36.7 155 55-239 186-353 (742)
30 PRK10077 xylE D-xylose transpo 99.9 8.3E-21 1.8E-25 204.1 33.1 434 35-556 12-471 (479)
31 TIGR00903 2A0129 major facilit 99.9 2E-20 4.3E-25 193.7 34.5 156 52-239 8-163 (368)
32 PRK03699 putative transporter; 99.9 2.6E-20 5.6E-25 195.2 35.8 174 32-236 4-178 (394)
33 PRK10213 nepI ribonucleoside t 99.9 4.3E-20 9.2E-25 193.5 37.3 174 31-235 16-189 (394)
34 PRK11195 lysophospholipid tran 99.9 3.3E-20 7.2E-25 194.3 36.0 168 35-237 3-170 (393)
35 cd06174 MFS The Major Facilita 99.9 3.2E-20 7E-25 189.9 34.6 348 38-539 2-349 (352)
36 TIGR00891 2A0112 putative sial 99.9 1.9E-20 4.1E-25 196.2 33.6 174 31-235 8-183 (405)
37 TIGR00711 efflux_EmrB drug res 99.9 1.3E-20 2.8E-25 202.8 32.9 378 36-500 3-409 (485)
38 TIGR00892 2A0113 monocarboxyla 99.9 1.1E-20 2.5E-25 201.6 31.9 150 60-240 43-193 (455)
39 PF07690 MFS_1: Major Facilita 99.9 3.6E-21 7.9E-26 197.5 26.0 167 41-237 2-168 (352)
40 TIGR00894 2A0114euk Na(+)-depe 99.9 1.4E-20 3E-25 201.7 31.1 379 65-541 70-449 (465)
41 PRK03633 putative MFS family t 99.9 8.2E-20 1.8E-24 190.6 35.6 158 34-222 5-162 (381)
42 PLN00028 nitrate transmembrane 99.9 6E-20 1.3E-24 197.1 34.8 176 32-239 33-217 (476)
43 TIGR00897 2A0118 polyol permea 99.9 2.9E-19 6.2E-24 187.9 39.0 170 32-228 10-180 (402)
44 PRK15011 sugar efflux transpor 99.9 2.5E-19 5.3E-24 187.8 37.8 177 34-239 14-192 (393)
45 TIGR02332 HpaX 4-hydroxyphenyl 99.9 5.4E-20 1.2E-24 193.9 32.6 176 32-238 5-186 (412)
46 TIGR00890 2A0111 Oxalate/Forma 99.9 6.3E-20 1.4E-24 189.9 32.0 156 51-238 19-174 (377)
47 TIGR00710 efflux_Bcr_CflA drug 99.9 2.7E-19 5.9E-24 186.3 36.8 175 34-239 4-178 (385)
48 PRK10406 alpha-ketoglutarate t 99.9 4.7E-19 1E-23 188.0 38.6 174 37-233 24-211 (432)
49 PRK10091 MFS transport protein 99.9 1.7E-19 3.6E-24 188.3 34.6 173 34-237 2-174 (382)
50 PRK09528 lacY galactoside perm 99.9 5.8E-20 1.3E-24 194.3 31.3 387 35-544 10-405 (420)
51 PRK09952 shikimate transporter 99.9 3.3E-19 7.1E-24 189.5 37.2 177 33-232 20-211 (438)
52 PRK11652 emrD multidrug resist 99.9 2.5E-19 5.4E-24 187.8 35.8 172 33-235 6-177 (394)
53 PRK12307 putative sialic acid 99.9 3.8E-19 8.2E-24 188.3 37.2 168 32-230 15-182 (426)
54 PRK15403 multidrug efflux syst 99.9 5.6E-19 1.2E-23 186.2 38.3 159 49-238 30-188 (413)
55 PRK10642 proline/glycine betai 99.9 5.2E-19 1.1E-23 190.7 38.3 176 34-232 15-204 (490)
56 KOG2532 Permease of the major 99.9 4.4E-21 9.5E-26 202.1 21.5 376 65-542 67-447 (466)
57 TIGR00895 2A0115 benzoate tran 99.9 1E-19 2.3E-24 189.9 31.0 172 33-235 15-186 (398)
58 PF00854 PTR2: POT family; In 99.9 2.5E-21 5.5E-26 201.1 17.7 351 102-484 1-369 (372)
59 TIGR00887 2A0109 phosphate:H+ 99.9 5.5E-19 1.2E-23 191.2 36.0 181 33-237 14-221 (502)
60 TIGR00898 2A0119 cation transp 99.9 2.2E-19 4.7E-24 194.5 32.3 146 61-239 114-262 (505)
61 PRK15075 citrate-proton sympor 99.9 1.7E-18 3.8E-23 183.8 38.5 172 34-228 14-199 (434)
62 TIGR00712 glpT glycerol-3-phos 99.9 2.5E-19 5.4E-24 190.5 31.7 153 59-238 50-203 (438)
63 TIGR00902 2A0127 phenyl propri 99.9 1.3E-18 2.8E-23 181.6 35.6 367 36-537 5-374 (382)
64 PRK03893 putative sialic acid 99.9 5.2E-19 1.1E-23 191.1 33.3 169 32-231 17-185 (496)
65 PF05977 MFS_3: Transmembrane 99.9 2.6E-18 5.5E-23 184.2 37.1 383 35-541 10-393 (524)
66 TIGR00881 2A0104 phosphoglycer 99.9 1.1E-19 2.4E-24 188.2 25.4 160 48-238 8-168 (379)
67 PRK11043 putative transporter; 99.8 1E-17 2.2E-22 176.0 38.4 163 47-239 15-179 (401)
68 PRK08633 2-acyl-glycerophospho 99.8 2.5E-18 5.5E-23 204.3 36.5 156 34-216 8-165 (1146)
69 KOG1330 Sugar transporter/spin 99.8 5.9E-20 1.3E-24 185.3 18.7 180 33-243 31-211 (493)
70 PRK10473 multidrug efflux syst 99.8 1.1E-17 2.5E-22 175.1 36.7 171 35-236 3-173 (392)
71 PRK11102 bicyclomycin/multidru 99.8 8.7E-18 1.9E-22 174.8 35.2 158 50-238 6-163 (377)
72 TIGR00882 2A0105 oligosacchari 99.8 6.8E-18 1.5E-22 177.0 34.5 388 35-537 2-390 (396)
73 KOG0569 Permease of the major 99.8 2.2E-18 4.8E-23 179.8 29.9 392 73-556 62-468 (485)
74 PRK10133 L-fucose transporter; 99.8 2E-17 4.3E-22 175.5 37.1 155 31-213 22-176 (438)
75 PRK06814 acylglycerophosphoeth 99.8 3.9E-18 8.5E-23 202.3 34.2 339 71-500 52-395 (1140)
76 PRK11010 ampG muropeptide tran 99.8 5.9E-17 1.3E-21 174.4 40.0 385 34-542 11-403 (491)
77 TIGR00886 2A0108 nitrite extru 99.8 1.8E-18 3.9E-23 179.0 26.7 161 35-225 1-171 (366)
78 PRK15034 nitrate/nitrite trans 99.8 3E-17 6.6E-22 172.0 35.6 180 35-240 34-231 (462)
79 TIGR00889 2A0110 nucleoside tr 99.8 1.4E-16 3E-21 168.2 40.4 394 38-547 5-407 (418)
80 PRK11128 putative 3-phenylprop 99.8 4.8E-17 1E-21 169.8 34.3 338 43-500 12-354 (382)
81 TIGR00792 gph sugar (Glycoside 99.8 4.1E-17 8.9E-22 173.3 33.6 354 44-502 8-381 (437)
82 PRK11902 ampG muropeptide tran 99.8 4.6E-16 1E-20 163.5 37.1 166 41-236 5-177 (402)
83 COG2223 NarK Nitrate/nitrite t 99.8 7.8E-17 1.7E-21 161.7 29.3 392 31-545 10-404 (417)
84 TIGR00883 2A0106 metabolite-pr 99.8 5.5E-17 1.2E-21 168.9 29.2 165 48-235 6-185 (394)
85 KOG0254 Predicted transporter 99.8 1.4E-16 2.9E-21 172.8 30.2 155 52-237 63-226 (513)
86 TIGR00885 fucP L-fucose:H+ sym 99.8 9.2E-16 2E-20 161.4 35.1 173 36-236 4-202 (410)
87 TIGR00901 2A0125 AmpG-related 99.8 4.8E-16 1E-20 160.5 30.1 153 57-238 10-175 (356)
88 TIGR00896 CynX cyanate transpo 99.8 2.7E-16 5.8E-21 162.4 28.2 146 54-232 19-166 (355)
89 TIGR00806 rfc RFC reduced fola 99.8 8E-16 1.7E-20 158.6 30.3 155 54-240 44-202 (511)
90 TIGR01301 GPH_sucrose GPH fami 99.8 2E-15 4.3E-20 159.4 34.1 436 35-546 4-475 (477)
91 COG0738 FucP Fucose permease [ 99.8 2E-15 4.4E-20 150.6 30.5 384 35-548 12-415 (422)
92 PRK09848 glucuronide transport 99.7 2E-14 4.4E-19 153.3 34.5 158 35-213 8-174 (448)
93 PRK09669 putative symporter Ya 99.7 3E-14 6.5E-19 151.8 35.8 179 35-235 9-198 (444)
94 PF03825 Nuc_H_symport: Nucleo 99.7 2.4E-13 5.1E-18 141.8 39.1 382 39-544 6-397 (400)
95 PRK10429 melibiose:sodium symp 99.7 9.8E-14 2.1E-18 149.0 35.9 175 37-235 8-195 (473)
96 KOG3764 Vesicular amine transp 99.7 3.8E-15 8.2E-20 147.6 22.7 147 65-240 100-246 (464)
97 KOG0255 Synaptic vesicle trans 99.7 2.6E-14 5.6E-19 155.5 31.7 141 64-237 111-251 (521)
98 TIGR02718 sider_RhtX_FptX side 99.7 1.8E-13 3.8E-18 143.3 35.7 177 37-240 3-183 (390)
99 KOG2615 Permease of the major 99.7 8.2E-15 1.8E-19 144.4 23.0 118 67-215 64-181 (451)
100 PF13347 MFS_2: MFS/sugar tran 99.7 1.2E-14 2.6E-19 154.1 25.8 357 44-502 10-385 (428)
101 TIGR00788 fbt folate/biopterin 99.7 1.1E-13 2.4E-18 148.0 32.2 178 34-240 24-208 (468)
102 TIGR00805 oat sodium-independe 99.7 2E-14 4.3E-19 158.7 26.7 201 32-241 29-281 (633)
103 PF00083 Sugar_tr: Sugar (and 99.6 8.6E-20 1.9E-24 194.7 -17.9 137 72-235 47-186 (451)
104 PF01306 LacY_symp: LacY proto 99.6 1E-12 2.2E-17 135.0 32.6 384 34-544 6-402 (412)
105 PTZ00207 hypothetical protein; 99.6 5.8E-12 1.3E-16 136.0 39.7 176 32-237 25-201 (591)
106 PF06609 TRI12: Fungal trichot 99.6 5.3E-13 1.2E-17 143.1 30.7 150 56-237 64-213 (599)
107 PRK11462 putative transporter; 99.6 2.7E-12 5.8E-17 137.2 35.6 178 35-234 9-197 (460)
108 KOG0252 Inorganic phosphate tr 99.6 1.3E-14 2.8E-19 146.3 13.5 176 33-231 36-236 (538)
109 KOG2533 Permease of the major 99.6 7.9E-13 1.7E-17 140.1 27.1 150 64-243 74-229 (495)
110 KOG2504 Monocarboxylate transp 99.6 9.7E-13 2.1E-17 140.7 26.8 416 37-542 44-476 (509)
111 COG2271 UhpC Sugar phosphate p 99.6 3.3E-14 7.2E-19 142.7 13.9 180 34-240 251-433 (448)
112 PRK10642 proline/glycine betai 99.6 9.3E-14 2E-18 149.9 18.3 179 33-239 248-428 (490)
113 PRK09952 shikimate transporter 99.5 2.2E-13 4.7E-18 144.9 18.1 184 31-240 246-432 (438)
114 COG2807 CynX Cyanate permease 99.5 8E-11 1.7E-15 116.3 31.6 161 47-240 24-185 (395)
115 COG2211 MelB Na+/melibiose sym 99.5 1.7E-10 3.6E-15 119.9 35.1 371 35-514 12-403 (467)
116 PRK15011 sugar efflux transpor 99.5 1.9E-12 4.1E-17 135.7 20.9 177 33-240 214-390 (393)
117 TIGR00883 2A0106 metabolite-pr 99.5 6E-13 1.3E-17 138.5 14.1 173 32-231 216-391 (394)
118 PRK09556 uhpT sugar phosphate 99.4 2.7E-12 5.9E-17 137.7 18.4 176 35-238 258-446 (467)
119 TIGR00890 2A0111 Oxalate/Forma 99.4 1.8E-12 3.9E-17 134.1 16.3 171 35-234 205-375 (377)
120 PF11700 ATG22: Vacuole efflux 99.4 1.6E-09 3.6E-14 115.3 39.0 388 49-541 19-467 (477)
121 TIGR00889 2A0110 nucleoside tr 99.4 1.5E-12 3.2E-17 137.6 15.4 178 36-240 209-401 (418)
122 PRK11551 putative 3-hydroxyphe 99.4 4.1E-12 8.9E-17 133.6 17.7 172 36-238 221-393 (406)
123 PRK05122 major facilitator sup 99.4 6E-12 1.3E-16 132.1 18.5 175 37-244 218-392 (399)
124 TIGR00899 2A0120 sugar efflux 99.4 7.4E-12 1.6E-16 129.9 18.7 173 36-239 200-372 (375)
125 KOG0253 Synaptic vesicle trans 99.4 3.7E-11 8E-16 118.1 22.0 179 61-274 103-283 (528)
126 PRK03699 putative transporter; 99.4 8E-12 1.7E-16 131.0 18.7 172 35-237 205-376 (394)
127 PRK09705 cynX putative cyanate 99.4 1.7E-11 3.8E-16 128.4 20.6 176 35-242 205-382 (393)
128 PF03209 PUCC: PUCC protein; 99.4 1.4E-09 3E-14 110.2 32.2 375 62-539 6-395 (403)
129 TIGR01299 synapt_SV2 synaptic 99.4 1E-11 2.2E-16 138.1 18.6 134 76-240 600-733 (742)
130 cd06174 MFS The Major Facilita 99.4 1.7E-11 3.8E-16 125.2 18.9 174 35-238 175-349 (352)
131 PRK10406 alpha-ketoglutarate t 99.4 1.1E-11 2.5E-16 131.5 17.6 178 36-239 243-422 (432)
132 PRK09874 drug efflux system pr 99.4 1.4E-11 3E-16 129.5 17.3 170 41-240 225-397 (408)
133 PRK11273 glpT sn-glycerol-3-ph 99.4 1.2E-11 2.5E-16 132.2 16.2 176 35-238 253-432 (452)
134 KOG4686 Predicted sugar transp 99.4 2.4E-11 5.3E-16 115.2 15.9 181 23-235 252-436 (459)
135 TIGR00893 2A0114 d-galactonate 99.4 3.8E-11 8.2E-16 124.7 19.2 177 35-238 215-396 (399)
136 PRK11663 regulatory protein Uh 99.4 2.1E-11 4.7E-16 129.5 17.5 176 35-238 243-421 (434)
137 PRK09528 lacY galactoside perm 99.3 8.7E-12 1.9E-16 131.9 13.9 172 37-238 225-400 (420)
138 TIGR00902 2A0127 phenyl propri 99.3 4.1E-11 9E-16 125.0 18.7 169 35-236 205-374 (382)
139 PRK12382 putative transporter; 99.3 4.1E-11 8.9E-16 125.4 17.6 171 36-239 217-387 (392)
140 TIGR00891 2A0112 putative sial 99.3 2.8E-11 6.1E-16 126.7 16.2 160 37-225 240-400 (405)
141 PRK03545 putative arabinose tr 99.3 1.2E-10 2.5E-15 122.0 20.6 174 36-240 206-379 (390)
142 KOG4686 Predicted sugar transp 99.3 2.3E-11 5E-16 115.3 13.3 137 54-216 62-198 (459)
143 KOG2325 Predicted transporter/ 99.3 5E-11 1.1E-15 124.1 17.0 189 24-239 23-227 (488)
144 PRK15075 citrate-proton sympor 99.3 5.1E-11 1.1E-15 126.6 17.3 158 35-219 238-397 (434)
145 PRK10489 enterobactin exporter 99.3 5.9E-11 1.3E-15 125.4 17.5 158 51-238 239-396 (417)
146 PRK03633 putative MFS family t 99.3 9.7E-11 2.1E-15 122.2 18.6 161 44-238 209-369 (381)
147 TIGR00880 2_A_01_02 Multidrug 99.3 1.7E-11 3.8E-16 107.5 10.9 133 77-239 4-136 (141)
148 TIGR00897 2A0118 polyol permea 99.3 1.5E-10 3.3E-15 121.7 19.8 176 35-238 222-398 (402)
149 PRK03893 putative sialic acid 99.3 1E-10 2.2E-15 126.4 18.2 151 52-230 292-442 (496)
150 COG2270 Permeases of the major 99.3 1.3E-09 2.7E-14 110.3 24.1 345 53-503 33-405 (438)
151 PRK11010 ampG muropeptide tran 99.3 2.5E-10 5.3E-15 123.2 19.7 179 37-241 224-403 (491)
152 TIGR01272 gluP glucose/galacto 99.2 2.6E-10 5.7E-15 115.3 17.5 164 35-231 140-305 (310)
153 TIGR00712 glpT glycerol-3-phos 99.2 9.5E-11 2.1E-15 124.7 14.8 178 35-240 251-432 (438)
154 COG2223 NarK Nitrate/nitrite t 99.2 1E-10 2.2E-15 118.0 13.9 185 34-242 217-402 (417)
155 PF11700 ATG22: Vacuole efflux 99.2 5.5E-10 1.2E-14 118.9 19.9 186 33-240 279-467 (477)
156 COG2814 AraJ Arabinose efflux 99.2 5.1E-10 1.1E-14 114.1 18.1 177 35-242 211-387 (394)
157 TIGR00900 2A0121 H+ Antiporter 99.2 7.5E-11 1.6E-15 121.4 12.1 154 35-217 210-364 (365)
158 PRK10504 putative transporter; 99.2 5.9E-10 1.3E-14 119.7 18.6 158 35-219 261-418 (471)
159 TIGR00892 2A0113 monocarboxyla 99.2 4.5E-10 9.8E-15 120.0 17.4 171 35-235 241-415 (455)
160 TIGR02718 sider_RhtX_FptX side 99.2 3.8E-10 8.3E-15 118.1 16.4 175 36-235 209-385 (390)
161 TIGR00894 2A0114euk Na(+)-depe 99.2 1.1E-09 2.4E-14 117.4 19.5 178 34-239 260-448 (465)
162 KOG2563 Permease of the major 99.2 1.2E-08 2.7E-13 103.6 25.5 184 35-243 41-237 (480)
163 TIGR00879 SP MFS transporter, 99.2 6.4E-10 1.4E-14 118.7 17.0 181 38-240 287-469 (481)
164 PRK11128 putative 3-phenylprop 99.2 1.3E-09 2.9E-14 113.7 18.7 166 35-233 205-371 (382)
165 TIGR00792 gph sugar (Glycoside 99.2 1.5E-10 3.3E-15 122.9 11.7 161 35-219 222-383 (437)
166 TIGR00881 2A0104 phosphoglycer 99.2 2.4E-10 5.1E-15 118.3 12.8 162 35-223 216-379 (379)
167 PRK15402 multidrug efflux syst 99.1 3.2E-09 7E-14 111.7 21.0 173 35-233 215-387 (406)
168 TIGR02332 HpaX 4-hydroxyphenyl 99.1 1.2E-09 2.6E-14 115.2 16.6 165 35-229 242-409 (412)
169 TIGR00882 2A0105 oligosacchari 99.1 1.3E-09 2.7E-14 114.4 15.9 172 35-236 215-390 (396)
170 PRK10091 MFS transport protein 99.1 3.1E-09 6.6E-14 111.0 18.6 172 36-238 200-373 (382)
171 PRK12307 putative sialic acid 99.1 3.8E-09 8.1E-14 111.8 18.9 150 46-224 242-391 (426)
172 PF03092 BT1: BT1 family; Int 99.1 8E-08 1.7E-12 101.7 28.7 161 56-240 10-174 (433)
173 TIGR00896 CynX cyanate transpo 99.1 3.4E-09 7.3E-14 109.4 17.7 153 35-218 197-350 (355)
174 PRK10054 putative transporter; 99.1 1.4E-09 3.1E-14 114.0 15.1 174 35-238 206-381 (395)
175 PF05977 MFS_3: Transmembrane 99.1 2E-09 4.3E-14 115.9 16.1 174 35-238 218-391 (524)
176 PLN00028 nitrate transmembrane 99.1 2.8E-09 6.1E-14 114.6 16.7 174 36-241 253-433 (476)
177 TIGR00711 efflux_EmrB drug res 99.1 1.9E-09 4.1E-14 116.1 15.3 156 35-216 255-410 (485)
178 PF13347 MFS_2: MFS/sugar tran 99.1 3.2E-09 6.9E-14 112.6 16.5 161 35-218 225-386 (428)
179 TIGR00895 2A0115 benzoate tran 99.1 1.9E-09 4E-14 112.4 14.5 148 35-213 250-397 (398)
180 PRK14995 methyl viologen resis 99.1 2.6E-09 5.7E-14 115.4 15.9 154 35-215 259-412 (495)
181 PRK11902 ampG muropeptide tran 99.1 9.7E-09 2.1E-13 108.0 19.6 174 36-239 210-388 (402)
182 TIGR01272 gluP glucose/galacto 99.0 4.5E-08 9.8E-13 99.0 23.0 85 147-237 9-109 (310)
183 PRK10133 L-fucose transporter; 99.0 5.9E-09 1.3E-13 110.8 17.2 169 35-236 258-428 (438)
184 TIGR00710 efflux_Bcr_CflA drug 99.0 1.6E-08 3.5E-13 105.1 20.0 166 35-226 206-371 (385)
185 KOG2532 Permease of the major 99.0 8.9E-09 1.9E-13 109.1 16.8 178 35-240 258-446 (466)
186 TIGR00901 2A0125 AmpG-related 99.0 2E-09 4.3E-14 111.1 11.7 145 36-200 210-355 (356)
187 TIGR00887 2A0109 phosphate:H+ 99.0 7.1E-09 1.5E-13 112.4 16.2 170 41-237 294-485 (502)
188 PF07690 MFS_1: Major Facilita 99.0 1.6E-09 3.5E-14 110.9 10.4 145 36-207 207-352 (352)
189 PRK11646 multidrug resistance 99.0 8.8E-09 1.9E-13 108.2 16.0 170 37-236 210-383 (400)
190 PRK10077 xylE D-xylose transpo 99.0 2.1E-08 4.5E-13 107.9 18.9 162 51-239 287-455 (479)
191 PRK15034 nitrate/nitrite trans 99.0 2.2E-08 4.8E-13 105.5 18.1 185 35-239 252-452 (462)
192 PRK08633 2-acyl-glycerophospho 99.0 1.4E-08 3E-13 121.3 18.6 164 35-228 232-397 (1146)
193 KOG2816 Predicted transporter 99.0 5.6E-07 1.2E-11 95.1 28.3 363 36-503 22-394 (463)
194 PRK10213 nepI ribonucleoside t 99.0 4.7E-08 1E-12 102.5 20.4 167 35-233 216-383 (394)
195 PRK11102 bicyclomycin/multidru 98.9 2.5E-08 5.5E-13 103.6 17.4 151 35-212 194-345 (377)
196 PRK06814 acylglycerophosphoeth 98.9 1.8E-08 3.9E-13 120.1 17.8 184 35-229 225-410 (1140)
197 COG2807 CynX Cyanate permease 98.9 8.4E-08 1.8E-12 95.2 19.1 171 35-235 208-379 (395)
198 TIGR00903 2A0129 major facilit 98.9 5.4E-08 1.2E-12 101.0 18.5 166 35-237 192-361 (368)
199 COG2270 Permeases of the major 98.9 2.5E-08 5.4E-13 101.0 15.3 176 35-240 252-428 (438)
200 PF05631 DUF791: Protein of un 98.9 6.1E-07 1.3E-11 89.8 23.9 152 64-242 62-217 (354)
201 PRK09848 glucuronide transport 98.9 2.1E-08 4.5E-13 107.1 14.0 163 35-219 228-391 (448)
202 PRK10429 melibiose:sodium symp 98.9 1.7E-08 3.7E-13 108.5 13.0 165 35-219 231-396 (473)
203 PRK10473 multidrug efflux syst 98.9 4.2E-08 9.1E-13 102.7 15.7 77 45-122 213-289 (392)
204 PRK09669 putative symporter Ya 98.9 1.4E-08 3E-13 108.3 11.5 161 35-219 229-391 (444)
205 PRK11195 lysophospholipid tran 98.8 1.4E-07 3.1E-12 98.9 18.6 161 45-236 215-375 (393)
206 PRK11043 putative transporter; 98.8 3E-07 6.5E-12 96.5 21.0 159 37-222 205-363 (401)
207 PF03137 OATP: Organic Anion T 98.8 6.8E-10 1.5E-14 119.9 -0.6 190 49-247 16-256 (539)
208 KOG2504 Monocarboxylate transp 98.8 6.8E-08 1.5E-12 103.7 14.6 176 35-241 298-476 (509)
209 KOG3626 Organic anion transpor 98.8 9.5E-07 2.1E-11 96.2 23.3 202 35-245 96-347 (735)
210 TIGR00898 2A0119 cation transp 98.8 7.9E-08 1.7E-12 104.2 14.6 131 79-239 363-493 (505)
211 PF03825 Nuc_H_symport: Nucleo 98.8 2.6E-07 5.7E-12 96.6 17.8 181 35-240 207-394 (400)
212 KOG0253 Synaptic vesicle trans 98.8 1.2E-07 2.6E-12 93.8 13.2 171 34-236 325-514 (528)
213 TIGR00886 2A0108 nitrite extru 98.7 6.2E-08 1.3E-12 100.1 12.0 142 35-203 225-366 (366)
214 TIGR00885 fucP L-fucose:H+ sym 98.7 2.7E-07 5.8E-12 97.3 16.4 166 35-233 232-404 (410)
215 PRK11652 emrD multidrug resist 98.7 3.7E-07 8E-12 95.6 17.4 151 45-223 217-367 (394)
216 COG2211 MelB Na+/melibiose sym 98.7 1.6E-07 3.4E-12 98.0 14.1 159 34-215 235-395 (467)
217 KOG0569 Permease of the major 98.7 4.3E-07 9.4E-12 95.6 17.1 189 32-242 266-455 (485)
218 PF01306 LacY_symp: LacY proto 98.5 1.1E-06 2.4E-11 90.8 13.3 174 35-238 220-397 (412)
219 TIGR00924 yjdL_sub1_fam amino 98.5 3.8E-06 8.1E-11 90.3 16.6 185 36-240 273-467 (475)
220 TIGR00880 2_A_01_02 Multidrug 98.4 9.8E-06 2.1E-10 70.5 15.7 109 401-542 30-138 (141)
221 PRK11462 putative transporter; 98.4 1.8E-05 4E-10 84.7 20.5 160 35-218 228-389 (460)
222 KOG1330 Sugar transporter/spin 98.4 1.3E-07 2.9E-12 96.6 3.4 152 360-555 71-222 (493)
223 PF03209 PUCC: PUCC protein; 98.4 1E-05 2.2E-10 82.5 16.1 164 49-238 222-395 (403)
224 KOG3098 Uncharacterized conser 98.4 0.00026 5.7E-09 74.2 27.0 102 77-209 56-157 (461)
225 COG0738 FucP Fucose permease [ 98.4 1E-05 2.2E-10 81.8 15.4 166 35-233 236-402 (422)
226 PF06813 Nodulin-like: Nodulin 98.4 3E-05 6.6E-10 75.0 18.1 166 50-241 17-182 (250)
227 PRK15403 multidrug efflux syst 98.3 2.6E-05 5.6E-10 82.3 18.2 169 35-231 218-387 (413)
228 KOG4332 Predicted sugar transp 98.3 1.8E-05 3.8E-10 75.3 13.7 153 60-238 61-217 (454)
229 COG0477 ProP Permeases of the 98.3 3.5E-05 7.5E-10 76.1 17.0 156 46-230 13-174 (338)
230 KOG3762 Predicted transporter 98.3 0.00021 4.6E-09 74.8 22.7 109 401-542 438-547 (618)
231 KOG3764 Vesicular amine transp 98.3 2.3E-06 4.9E-11 86.0 8.0 172 36-231 271-444 (464)
232 PRK09584 tppB putative tripept 98.2 3.7E-05 8E-10 83.2 17.0 175 44-239 281-477 (500)
233 PF01770 Folate_carrier: Reduc 98.2 0.00073 1.6E-08 69.8 25.4 157 54-241 22-182 (412)
234 PRK10207 dipeptide/tripeptide 98.2 3.2E-05 6.9E-10 83.4 16.0 150 44-213 278-438 (489)
235 TIGR00788 fbt folate/biopterin 98.2 4.7E-06 1E-10 89.4 9.4 147 63-229 280-431 (468)
236 TIGR01301 GPH_sucrose GPH fami 98.2 3.7E-05 8.1E-10 81.8 15.4 208 28-243 251-473 (477)
237 PF12832 MFS_1_like: MFS_1 lik 98.1 2.7E-05 5.8E-10 60.8 9.1 69 42-112 7-75 (77)
238 KOG2533 Permease of the major 98.0 4.3E-05 9.4E-10 81.5 10.6 164 35-226 273-441 (495)
239 TIGR00769 AAA ADP/ATP carrier 97.9 0.045 9.7E-07 58.3 32.0 162 34-214 6-189 (472)
240 PF02487 CLN3: CLN3 protein; 97.9 0.038 8.2E-07 57.3 30.4 60 437-496 333-392 (402)
241 PF00083 Sugar_tr: Sugar (and 97.9 1.5E-07 3.2E-12 100.5 -10.3 182 35-239 252-434 (451)
242 KOG0637 Sucrose transporter an 97.8 6.2E-05 1.3E-09 77.2 7.3 163 35-213 32-202 (498)
243 TIGR00805 oat sodium-independe 97.7 0.00016 3.6E-09 80.3 10.9 165 359-541 70-280 (633)
244 KOG3762 Predicted transporter 97.7 0.00019 4.1E-09 75.1 9.9 169 41-240 377-546 (618)
245 KOG0252 Inorganic phosphate tr 97.6 6.6E-05 1.4E-09 77.0 4.9 179 35-240 304-497 (538)
246 PF06963 FPN1: Ferroportin1 (F 97.6 0.12 2.6E-06 54.4 29.3 190 35-236 2-195 (432)
247 KOG2615 Permease of the major 97.5 0.0011 2.4E-08 66.7 12.5 152 36-216 261-414 (451)
248 KOG0254 Predicted transporter 97.5 0.0022 4.7E-08 69.8 15.8 151 33-204 292-445 (513)
249 TIGR00806 rfc RFC reduced fola 97.5 0.0043 9.3E-08 65.3 16.1 80 400-497 93-172 (511)
250 PRK15462 dipeptide/tripeptide 97.4 0.0063 1.4E-07 65.3 17.2 155 37-213 270-437 (493)
251 PF06609 TRI12: Fungal trichot 97.3 0.004 8.7E-08 67.7 14.0 154 29-210 304-461 (599)
252 PTZ00207 hypothetical protein; 97.3 0.0025 5.3E-08 69.7 12.4 174 35-241 353-552 (591)
253 PF05978 UNC-93: Ion channel r 97.3 0.0075 1.6E-07 54.0 13.4 104 75-209 41-144 (156)
254 KOG3574 Acetyl-CoA transporter 97.2 0.09 2E-06 53.2 20.7 159 30-210 26-189 (510)
255 KOG2816 Predicted transporter 97.2 0.0015 3.2E-08 69.4 8.8 149 35-214 240-390 (463)
256 PF06779 DUF1228: Protein of u 97.0 0.0059 1.3E-07 48.3 9.1 72 49-122 6-77 (85)
257 PRK03612 spermidine synthase; 96.7 0.092 2E-06 56.9 18.5 172 40-237 19-194 (521)
258 KOG2325 Predicted transporter/ 96.7 0.0051 1.1E-07 64.9 8.3 210 28-243 255-477 (488)
259 PF03137 OATP: Organic Anion T 96.7 0.00039 8.4E-09 75.5 0.0 176 35-216 305-514 (539)
260 PF06963 FPN1: Ferroportin1 (F 96.7 0.048 1E-06 57.3 15.5 155 36-211 259-413 (432)
261 KOG0255 Synaptic vesicle trans 96.6 0.019 4.2E-07 62.5 12.0 111 383-537 140-250 (521)
262 KOG2563 Permease of the major 96.5 0.016 3.5E-07 59.9 9.8 183 35-244 266-453 (480)
263 KOG3626 Organic anion transpor 96.3 0.029 6.2E-07 62.0 11.2 175 35-215 392-648 (735)
264 PF00854 PTR2: POT family; In 96.3 0.038 8.3E-07 57.3 11.7 124 401-548 3-129 (372)
265 COG3104 PTR2 Dipeptide/tripept 96.0 0.14 3E-06 54.0 13.5 182 38-240 287-486 (498)
266 PF06813 Nodulin-like: Nodulin 95.4 0.19 4.1E-06 48.9 11.3 90 398-498 65-154 (250)
267 PF05978 UNC-93: Ion channel r 95.2 0.83 1.8E-05 40.9 14.0 62 437-498 87-148 (156)
268 PF02487 CLN3: CLN3 protein; 94.0 0.15 3.2E-06 53.0 7.1 142 40-214 252-395 (402)
269 TIGR00926 2A1704 Peptide:H+ sy 93.8 2.3 5E-05 47.5 16.7 132 398-547 53-187 (654)
270 KOG0637 Sucrose transporter an 93.7 0.11 2.3E-06 54.0 5.6 130 360-496 70-200 (498)
271 KOG1479 Nucleoside transporter 93.7 10 0.00022 39.4 22.6 57 438-494 342-398 (406)
272 PF13000 Acatn: Acetyl-coenzym 92.7 14 0.00029 39.5 19.0 57 440-496 406-462 (544)
273 PF03092 BT1: BT1 family; Int 92.4 0.26 5.6E-06 52.3 6.3 156 63-240 244-412 (433)
274 KOG3098 Uncharacterized conser 92.0 5.4 0.00012 42.3 15.4 114 81-208 289-406 (461)
275 KOG4332 Predicted sugar transp 91.7 2.1 4.4E-05 41.7 10.7 140 73-236 284-426 (454)
276 KOG3810 Micronutrient transpor 91.6 7.2 0.00016 39.5 14.6 98 437-544 324-423 (433)
277 PF03219 TLC: TLC ATP/ADP tran 89.5 34 0.00073 36.9 21.2 167 31-215 20-205 (491)
278 TIGR00939 2a57 Equilibrative N 87.6 42 0.00091 35.6 22.6 58 438-495 371-428 (437)
279 KOG3097 Predicted membrane pro 87.0 6.6 0.00014 39.4 10.5 114 32-177 26-139 (390)
280 COG3202 ATP/ADP translocase [E 85.4 56 0.0012 34.9 27.8 168 33-215 25-209 (509)
281 TIGR00939 2a57 Equilibrative N 84.8 4.2 9E-05 43.2 8.8 154 35-208 269-426 (437)
282 KOG1479 Nucleoside transporter 81.8 3.4 7.4E-05 42.8 6.4 109 56-181 264-376 (406)
283 KOG3880 Predicted small molecu 81.4 37 0.0008 34.0 12.8 59 437-495 340-398 (409)
284 TIGR00769 AAA ADP/ATP carrier 81.1 83 0.0018 33.7 18.2 57 444-500 133-190 (472)
285 KOG3574 Acetyl-CoA transporter 72.9 35 0.00077 35.2 10.4 105 437-544 131-238 (510)
286 KOG1237 H+/oligopeptide sympor 72.3 27 0.00059 38.4 10.4 135 399-549 104-252 (571)
287 PF01770 Folate_carrier: Reduc 67.6 1.7E+02 0.0036 30.8 16.6 62 437-499 92-153 (412)
288 COG5336 Uncharacterized protei 65.6 26 0.00056 28.8 6.2 32 81-112 52-83 (116)
289 PF01733 Nucleoside_tran: Nucl 60.3 3.3 7.1E-05 41.7 0.4 56 147-208 247-302 (309)
290 PF05631 DUF791: Protein of un 60.0 2.1E+02 0.0045 29.4 16.6 45 437-481 119-168 (354)
291 PF13000 Acatn: Acetyl-coenzym 54.7 1.5E+02 0.0032 32.0 11.3 100 442-544 121-223 (544)
292 COG0477 ProP Permeases of the 53.0 2E+02 0.0044 27.1 14.2 63 438-500 93-157 (338)
293 PF09527 ATPase_gene1: Putativ 51.9 83 0.0018 22.3 6.5 32 79-110 8-39 (55)
294 PF07672 MFS_Mycoplasma: Mycop 45.6 3E+02 0.0066 26.9 13.2 57 188-244 4-65 (267)
295 PF11947 DUF3464: Protein of u 44.9 52 0.0011 29.2 5.3 31 170-206 116-146 (153)
296 PRK03612 spermidine synthase; 42.0 4.9E+02 0.011 28.3 14.9 52 447-499 118-169 (521)
297 KOG4830 Predicted sugar transp 40.6 53 0.0012 32.0 5.0 62 42-105 24-94 (412)
298 COG5336 Uncharacterized protei 39.6 1.9E+02 0.0041 24.0 7.2 33 468-500 35-67 (116)
299 PF03219 TLC: TLC ATP/ADP tran 32.5 6.7E+02 0.015 27.1 17.7 42 459-500 164-205 (491)
300 COG3202 ATP/ADP translocase [E 29.6 7.4E+02 0.016 26.7 15.9 95 447-547 152-250 (509)
301 PF01891 CbiM: Cobalt uptake s 28.7 4.8E+02 0.01 24.3 11.3 33 438-470 172-204 (205)
302 TIGR02230 ATPase_gene1 F0F1-AT 26.9 2.2E+02 0.0049 23.3 5.9 25 84-108 55-79 (100)
303 PF06237 DUF1011: Protein of u 25.6 3.8E+02 0.0082 22.0 8.6 86 35-124 4-89 (101)
304 KOG1278 Endosomal membrane pro 25.2 5.5E+02 0.012 28.0 9.8 31 68-98 356-386 (628)
305 KOG3810 Micronutrient transpor 24.5 8.1E+02 0.017 25.4 12.7 98 73-198 273-370 (433)
306 TIGR01667 YCCS_YHJK integral m 23.2 2.9E+02 0.0063 31.4 8.1 53 90-164 42-97 (701)
307 PF06645 SPC12: Microsomal sig 23.2 1.7E+02 0.0036 22.6 4.3 43 193-238 11-53 (76)
308 PF04281 Tom22: Mitochondrial 22.4 2.4E+02 0.0053 24.5 5.6 24 465-488 61-84 (137)
309 KOG2082 K+/Cl- cotransporter K 22.4 1.2E+03 0.025 26.8 11.8 20 103-122 497-516 (1075)
310 PF07672 MFS_Mycoplasma: Mycop 22.1 7.1E+02 0.015 24.4 9.3 44 147-194 203-246 (267)
311 KOG2601 Iron transporter [Inor 21.6 4.4E+02 0.0096 27.5 8.0 75 36-111 28-102 (503)
312 TIGR01666 YCCS hypothetical me 21.0 3.7E+02 0.008 30.6 8.3 53 90-164 42-97 (704)
No 1
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-44 Score=386.62 Aligned_cols=523 Identities=41% Similarity=0.680 Sum_probs=449.1
Q ss_pred ccccCCCCCccc---cCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 035554 18 SLDFHGKPAIKD---RTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFL 94 (562)
Q Consensus 18 ~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~l 94 (562)
..+.+.++..+. .++.|+....++..+.++++++|++..++..|++.++|.+...+...+..+.....+.+++++++
T Consensus 17 ~~d~~~~~~~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~l 96 (571)
T KOG1237|consen 17 SVDYRGPLLGSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFL 96 (571)
T ss_pred eeeccCCcccccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444455543 67889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCC--CCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhh
Q 035554 95 SDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGC--GKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATF 172 (562)
Q Consensus 95 aDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~ 172 (562)
+|.|+||.+++.++.++..+|.+++.+.+..|.+.|+.| ....+.|+.++..+...++.++.+.++|.|+..|+..++
T Consensus 97 aD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~f 176 (571)
T KOG1237|consen 97 ADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAF 176 (571)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhh
Confidence 999999999999999999999999999989999888776 121346888878888899999999999999999999999
Q ss_pred hhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCC
Q 035554 173 GADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGN 252 (562)
Q Consensus 173 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (562)
.+||+++.++++++.+.+.++|+|+..++|..++..+..++.+..+|.+.|.++.+++++++++++...+.++.++|.++
T Consensus 177 GadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gs 256 (571)
T KOG1237|consen 177 GADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGS 256 (571)
T ss_pred cccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCC
Confidence 99999988887777788999999999999999999999999988999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhhhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhh
Q 035554 253 PLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVT 332 (562)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 332 (562)
++..+.+++..+.++++...+....... +...+.....+.++++++|++++....+. +.+....+|.+|...
T Consensus 257 p~t~i~~Vlvaa~~k~~~~~~~~~~~~~------~~~~~~~~~~~t~~f~~l~kaa~~~~~~~--~~~~~~~~w~lct~~ 328 (571)
T KOG1237|consen 257 PKTRIGQVLVAAAFKRKAVVSLDPEELY------YDCTDSVAIEGTKPFRFLDKAALKTSDDL--KDGLDANPWRLCTVT 328 (571)
T ss_pred chhHHHHHHHHHHHHHhccCCCcchhcc------ccccccccccCCcccchhhHhhccCCccc--ccccccCCccCCCce
Confidence 9999999999999998776554432220 01111122233567788888866543221 223345667777766
Q ss_pred hhhh-----------------------hhhHHHHHhhhccCCCcc-cccCccccccchhHHHHHHHHHHHHHHHHhhhhh
Q 035554 333 QVEE-----------------------MLSLFVEQGAAMNTGVSN-FQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKV 388 (562)
Q Consensus 333 ~~~~-----------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~ 388 (562)
++++ +.+.++.|+..+|++..+ +.+|++.+..+..+..++..|+.+++..|+.+|.
T Consensus 329 ~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~ 408 (571)
T KOG1237|consen 329 QVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKL 408 (571)
T ss_pred ehhhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhh
Confidence 6654 566778888899999876 9999999999999999999999999999999998
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhC
Q 035554 389 AKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQI 468 (562)
Q Consensus 389 ~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~ 468 (562)
.+ +++++++..++.+|+.+..+++...+..+..|.+........+.+++++|++++|+++|++|.+.+.+..|+.++++
T Consensus 409 t~-~~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qa 487 (571)
T KOG1237|consen 409 TG-NPFGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQA 487 (571)
T ss_pred cC-CCCCCChhheeeccchHHHHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhC
Confidence 76 55688999999999999999999999999999998866333456799999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCC-CCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 035554 469 PNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVP-PNLNDGHLDRFFFLSATVTAMNLGVFVVCARRYKS 547 (562)
Q Consensus 469 P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~-~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 547 (562)
|++||+.+++++.+..++|++++..++.++...+.. ..+|++ +++|..+++.+||+++....++...+..+.++++.
T Consensus 488 P~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~ 565 (571)
T KOG1237|consen 488 PESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDY 565 (571)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeee
Confidence 999999999999999999999999999988765533 457999 99999999999999999999999999999998887
Q ss_pred cchh
Q 035554 548 ISLQ 551 (562)
Q Consensus 548 ~~~~ 551 (562)
+..+
T Consensus 566 ~~~~ 569 (571)
T KOG1237|consen 566 KDDK 569 (571)
T ss_pred cccc
Confidence 6543
No 2
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-38 Score=324.16 Aligned_cols=459 Identities=20% Similarity=0.279 Sum_probs=331.1
Q ss_pred CCccccCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhC----CChhhhhhHHHHHHHHHHHHHHHHHHHhhhccc
Q 035554 25 PAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLR----QTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLG 100 (562)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg----~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G 100 (562)
+..++..+|||.++.++..|++||++|||++..+..|++.+++ +|++++..+++.|....+..++++||+|||++|
T Consensus 11 ~~~~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG 90 (498)
T COG3104 11 TLEMKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLG 90 (498)
T ss_pred ccccccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344556799999999999999999999999999999999988 999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCC
Q 035554 101 RYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEE 180 (562)
Q Consensus 101 rk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~ 180 (562)
+||++..|.+++++|.+++.... ..+...++++..++++|.|..+|+..++++|++|++
T Consensus 91 ~~~tI~lGail~~iGh~~L~~~~---------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~ 149 (498)
T COG3104 91 TRRTIVLGAILMAIGHLVLAISS---------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKD 149 (498)
T ss_pred hhHHHHHHHHHHHHHHHHHhccc---------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCC
Confidence 99999999999999999987751 013667999999999999999999999999999999
Q ss_pred CchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecC--CCCCchhH--
Q 035554 181 DPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFK--PSGNPLSR-- 256 (562)
Q Consensus 181 ~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-- 256 (562)
||+ |..+++++|.+.|+|+.++|.+++++.+.+||+.+|.++++.+.++++.+++.+++..... ++..+.+.
T Consensus 150 Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~ 225 (498)
T COG3104 150 DPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNF 225 (498)
T ss_pred Ccc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhh
Confidence 976 7899999999999999999999999999999999999999999999998888876665432 22222110
Q ss_pred ----HHHHHHHHHhhh--cccCCCCCCCccccchhhh--hccC--cccccc----cCchhHHHHHHhhhcccccccCCCC
Q 035554 257 ----FSQVIVASLRKI--NLEMPTNGGGLFEVHVREY--EANG--TRRILH----TNDFKFLDRAAIMTSADITTNEDQN 322 (562)
Q Consensus 257 ----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (562)
...+........ ... ............. .... .+...+ .++.+.+ .+..++...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~-~~~~Lfl~~-------- 293 (498)
T COG3104 226 LLPVLGGLVVMILAALLTLLL---NQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLL-AAIPLFLFA-------- 293 (498)
T ss_pred hhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHH-HHHHHHHHH--------
Confidence 001111100000 000 0000000000000 0000 000000 1111111 010000000
Q ss_pred CccceeehhhhhhhhhhHHHHHh-hhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHH
Q 035554 323 PNQWRLCTVTQVEEMLSLFVEQG-AAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQR 401 (562)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~ 401 (562)
...| ...+|..+.+..+. +..+++..++.+|+++.+++|++.++++.|+.++++.|+.++.. .++...+
T Consensus 294 ~iFW-----~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~-----~ps~~~K 363 (498)
T COG3104 294 VIFW-----ALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNK-----QPSTPIK 363 (498)
T ss_pred HHHH-----HHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCC-----CCCcchH
Confidence 0001 11233333333332 33445544689999999999999999999999999987776642 3688899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHH
Q 035554 402 VGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSM 481 (562)
Q Consensus 402 i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~ 481 (562)
.++|+.+++.+++...+..... +++....+.+|+++.|+++++||.+.+|...+.+++.+|+++++..|++|.
T Consensus 364 FalGl~l~g~~fl~l~~~~~~~-------~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wf 436 (498)
T COG3104 364 FALGLILAGLGFLILLLAGIWF-------GGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWF 436 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-------cCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHH
Confidence 9999999999999887763331 222446889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 035554 482 SSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARRYKS 547 (562)
Q Consensus 482 ~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 547 (562)
+.+..|+.++..+.+.... +. +..+......+|+..+.+.++..+......++.++
T Consensus 437 Lt~a~~~~l~g~va~~~~~-~~---------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r 492 (498)
T COG3104 437 LTVAAGQTLGGQVAGLTAV-TD---------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNR 492 (498)
T ss_pred HHHHHHHHhhceecccccc-cc---------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999877662110 00 00112233457888888888877777777666443
No 3
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=100.00 E-value=2.8e-35 Score=315.04 Aligned_cols=455 Identities=15% Similarity=0.174 Sum_probs=309.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 035554 31 TGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQA 110 (562)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~ 110 (562)
++|||.++.+++.+++|++++|++.++++.|+++++|++..+++++.+.+.....+..+++|+++||++||||++.++.+
T Consensus 10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~ 89 (489)
T PRK10207 10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI 89 (489)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999996699999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
++.++++++.++.+ ....++++|.++++|.|...|+..++++|++|+++++ |++
T Consensus 90 ~~~~g~~~~~~~~~----------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~~~ 143 (489)
T PRK10207 90 VLAIGYFMTGMSLL----------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LDG 143 (489)
T ss_pred HHHHHHHHHHHhcc----------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----hhc
Confidence 99999998887621 1234668899999999999999999999999887622 678
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeec--CCCCCchhHHHHHH-------
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHF--KPSGNPLSRFSQVI------- 261 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~------- 261 (562)
+++++|++.|+|+.++|.+++++.+..||++.|+++.+.++++++.+...+++.++. +|++++.+.....+
T Consensus 144 ~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~ 223 (489)
T PRK10207 144 AFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVV 223 (489)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999998776666666665555443332 22222222111100
Q ss_pred -HHHHhhhcccCCCCCCCcc-ccchhhh---hccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhh
Q 035554 262 -VASLRKINLEMPTNGGGLF-EVHVREY---EANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEE 336 (562)
Q Consensus 262 -~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 336 (562)
........... ...... ....... -.....+....++.+.+....+.... ......+.|
T Consensus 224 ~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~f~~~~~~~~~~~r~r~~~~~~l~~~~--------------~~f~~~~~q 287 (489)
T PRK10207 224 MIFVCAWLMHNV--EVANLVLIVLSIVVTIIFFREAFKLDKTGRNKMFVAFVLMLEA--------------VVFYILYAQ 287 (489)
T ss_pred HHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--------------HHHHHHHHH
Confidence 00000000000 000000 0000000 00000000000000000000000000 000011122
Q ss_pred ---hhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHH
Q 035554 337 ---MLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAM 413 (562)
Q Consensus 337 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~ 413 (562)
..+.+.+ ...+....++.++++.++++|++.+++..|+.+++. +|.++ |+..+++..++.+|+++.++++
T Consensus 288 ~~~~l~l~~~--~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~----~rl~~-r~~~~~~~~k~~~G~~l~~~~~ 360 (489)
T PRK10207 288 MPTSLNFFAI--NNVHHEILGFSINPVSFQALNPFWVVVASPILAGIY----THLGS-KGKDLSMPMKFTLGMFLCSLGF 360 (489)
T ss_pred cccHHHHHHH--HhccccccceEECHHHHHhHhHHHHHHHHHHHHHHH----HHHhh-CCCCCCcHHHHHHHHHHHHHHH
Confidence 2223332 134444556788889999999999999999987544 45443 2235789999999999999887
Q ss_pred HHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q 035554 414 IIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSM 493 (562)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~ 493 (562)
+.+....... ... ....+.||+++.+++.++||.+.+|+.++++.+.+|++++|.++|++++..++|+.+|..
T Consensus 361 ~~~~~~~~~~---~~~----~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~ 433 (489)
T PRK10207 361 LTAAAAGMWF---ADA----QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGY 433 (489)
T ss_pred HHHHHHHHhh---cCC----CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6654332110 000 123577889999999999999999999999999999999999999999999999999988
Q ss_pred HHHHhHhhhhcCCCCCCCCCCCC-chhhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 035554 494 ILSVVMVLTTKNGKPGWVPPNLN-DGHLDRFFFLSATVTAMNLGVFVVCARRYKSI 548 (562)
Q Consensus 494 l~~~i~~~~~~~~~~~w~~~~l~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 548 (562)
+...... .+. .. ++.. +..+..+|..+++++++..++++++.++.++.
T Consensus 434 l~~~~~~-~~~----~~--~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~ 482 (489)
T PRK10207 434 VATFTAV-PDN----IT--DPLETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRM 482 (489)
T ss_pred HHHHhcc-ccc----cc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7764321 100 00 1111 22356788888988888888888777765544
No 4
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=100.00 E-value=5.4e-34 Score=304.92 Aligned_cols=446 Identities=12% Similarity=0.155 Sum_probs=308.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh--hCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHH
Q 035554 31 TGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSV--LRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTF 108 (562)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~--lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~ 108 (562)
.+|||.++.+++.++++++++|++.++++.|++++ +|++..+++.+.+.+.++..++++++|+++||++||||++.++
T Consensus 6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~ 85 (475)
T TIGR00924 6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG 85 (475)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence 45789999999999999999999999999999988 9999999999999999999999999999999955999999999
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhh
Q 035554 109 QAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSK 188 (562)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 188 (562)
.++..++.+++.++ + +.+.+++++.+.|+|.|...|+..++++|++|+++++ + |
T Consensus 86 ~~~~~~g~~~~~~~---~--------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~-~--r 139 (475)
T TIGR00924 86 GIVLMLGHFMLAMS---I--------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP-R--R 139 (475)
T ss_pred HHHHHHHHHHHHhc---c--------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc-c--c
Confidence 99999999888765 1 2556788999999999999999999999999876521 1 7
Q ss_pred hhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchh----HHHHH----
Q 035554 189 TSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLS----RFSQV---- 260 (562)
Q Consensus 189 ~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---- 260 (562)
+++++++|.+.|+|+++||.+++++.+..||++.|+++++..+++.+.++..++.+++.++++++.+ +....
T Consensus 140 ~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (475)
T TIGR00924 140 DGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLAL 219 (475)
T ss_pred cceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHH
Confidence 7899999999999999999999999988899999999887777666666555544432222111110 10000
Q ss_pred ---HHHHHhhhcccCCCCCCCcc-cc------chhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeeh
Q 035554 261 ---IVASLRKINLEMPTNGGGLF-EV------HVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCT 330 (562)
Q Consensus 261 ---~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (562)
.....+.............. .. ......... +.....++.+.. ....+... ....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~l~l~~~-------------~~~~ 284 (475)
T TIGR00924 220 LAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFK-PRLDAVARNKMY-AYIVLFLE-------------AVVF 284 (475)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh-ccCCHHHHhHHH-HHHHHHHH-------------HHHH
Confidence 00000000000000000000 00 000000000 000000000000 00000000 0000
Q ss_pred hhhhhhhhhH-HHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHH
Q 035554 331 VTQVEEMLSL-FVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIA 409 (562)
Q Consensus 331 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~ 409 (562)
...+.|..+. .+.+.+++|.+..++.+|++.++++|++.++++.|+++++.. +..+ |...++...++.+|+++.
T Consensus 285 ~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~----~l~~-~~~~~~~~~k~~~G~~l~ 359 (475)
T TIGR00924 285 WVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWT----RLGR-KGKDPTTPLKFTLGMLFC 359 (475)
T ss_pred HHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHH----HHHh-CCCCCCcHHHHHHHHHHH
Confidence 1112233332 222334456666678899999999999999999999886543 3322 111356777899999999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Q 035554 410 TVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTY 489 (562)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ 489 (562)
++++...++... +. +...+.++||+++++++.++||.+..|..++++.+.+|+++||+++|++.+...+|+.
T Consensus 360 ~~~~~~~~~~~~----~~----~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~ 431 (475)
T TIGR00924 360 GASFLTFAASIW----FA----DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSL 431 (475)
T ss_pred HHHHHHHHHHHh----hc----CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 999988876521 11 1123578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 035554 490 VCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARRYK 546 (562)
Q Consensus 490 lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 546 (562)
+++.+...... ..++..+|...++++++..+++++..++.+
T Consensus 432 l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (475)
T TIGR00924 432 LGGYLATFGAV----------------PQGVTGVFGKIGLVTLLVGVVMALMVPWLN 472 (475)
T ss_pred HHHHHHHHHhc----------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99887764321 112345777778888877777777776544
No 5
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=100.00 E-value=1.3e-32 Score=290.32 Aligned_cols=443 Identities=15% Similarity=0.205 Sum_probs=295.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 32 GGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
+|||.++.+++.++++++++|++..+++.|+++++|+++.+++.+.+.+.....++++++|+++||++||||++.++.++
T Consensus 6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999933999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
..++.+++.... . ....++++..+..+|.|...|+.+++++|++|+++++ |.++
T Consensus 86 ~~lg~lll~~~~---~-------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~sg 139 (493)
T PRK15462 86 MAIGHVVLGASE---I-------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGG 139 (493)
T ss_pred HHHHHHHHHHhh---c-------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccce
Confidence 999887665421 0 1233555666677888888999999999999986532 8899
Q ss_pred HHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecC---CCCCchhHHHH----HH-HH
Q 035554 192 YSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFK---PSGNPLSRFSQ----VI-VA 263 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~-~~ 263 (562)
++++|...|+|+.++|.+++++.+.+||++.|.++++.++++.+.++..+++..+.. |++.+.++... .. ..
T Consensus 140 f~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (493)
T PRK15462 140 FSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVL 219 (493)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHH
Confidence 999999999999999999999998899999999988877777776666554443321 11111011000 00 00
Q ss_pred -----HHhhhcccCCCCCCCccccch---hhhhc-cCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhh
Q 035554 264 -----SLRKINLEMPTNGGGLFEVHV---REYEA-NGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQV 334 (562)
Q Consensus 264 -----~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 334 (562)
.+.......... ........ ...-. ....+....++.+......+..... ..| ..+
T Consensus 220 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~er~r~~~~~~l~~~~~---------~Fw-----~~~ 284 (493)
T PRK15462 220 LVATPALITVLFWKEWS-VYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSM---------LFW-----AFA 284 (493)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCHHHHhhHHHHHHHHHHHH---------HHH-----HHH
Confidence 000000000000 00000000 00000 0000000000001000000000000 001 111
Q ss_pred hh---hhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHH
Q 035554 335 EE---MLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATV 411 (562)
Q Consensus 335 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~ 411 (562)
+| .++.|.. ++.|+++.++.+|+.+.+++|++.++++.|+..+++..+.+| + +.++...|..+|+++.++
T Consensus 285 ~Q~~~sl~lfa~--~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~----~-~~~s~~~Kfa~g~~~~g~ 357 (493)
T PRK15462 285 QQGGSSISLYID--RFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAG----N-RTVRIWGKFALGLGLMSA 357 (493)
T ss_pred HHhhHHHHHHHH--HhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcC----C-CCCCcHHHHHHHHHHHHH
Confidence 22 2333333 557777788999999999999999999999999876433221 1 146889999999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHH-HHHHHH
Q 035554 412 AMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSST-AIGTYV 490 (562)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~-~lg~~l 490 (562)
+++.+.+.... ... ....+.+|++..++++++||.+.+|...+.+.+.+|++.+|+.||+|++.. .+|+.+
T Consensus 358 ~f~~l~~~~~~----~~~----~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~ 429 (493)
T PRK15462 358 GFCILTLSARW----SAM----YGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYL 429 (493)
T ss_pred HHHHHHHHHhh----cCC----CCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888765322 111 123788999999999999999999999999999999999999999998854 788888
Q ss_pred HHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 035554 491 CSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMN 534 (562)
Q Consensus 491 g~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~ 534 (562)
++.+.+...... .+. -....-....+..+|..++.+.++.
T Consensus 430 ~g~~~~~~~~~~-~~~---~~~~~~~~~~~~~~f~~~~~~~~~~ 469 (493)
T PRK15462 430 AGVIADQTSQAS-FDA---SGAINYSINAYIEVFDQITWGALAC 469 (493)
T ss_pred HHHHHHHhcccc-CCc---cccccchhhhHHHHHHHHHHHHHHH
Confidence 877766432100 000 0000001224566777777766655
No 6
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=100.00 E-value=1.2e-32 Score=296.19 Aligned_cols=454 Identities=14% Similarity=0.194 Sum_probs=304.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 32 GGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
+++|.++.+++.++++++++|++..+++.|+++++|++..+++++.+.+........+++|+++||++|||+++.++.++
T Consensus 18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~ 97 (500)
T PRK09584 18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV 97 (500)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 57788999999999999999999999999999999999999999988888777777789999999944999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
..++.+++.++. . ..+.+++++.++++|.|...|+..+++.|++|+++++ |+++
T Consensus 98 ~~ig~~l~~~~~---~-------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~~~ 151 (500)
T PRK09584 98 LAIGYALVAWSG---H-------------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LDGA 151 (500)
T ss_pred HHHHHHHHHHhc---c-------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hhhc
Confidence 999988877651 1 2455778899999999999999999999999865522 5578
Q ss_pred HHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeec--CCCCCchhHHH------HHHHH
Q 035554 192 YSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHF--KPSGNPLSRFS------QVIVA 263 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~------~~~~~ 263 (562)
++++|.+.|+|+.++|.+++++.+.+||++.|+++++..+++.+.++...+..+++ +|++++.+... .+...
T Consensus 152 ~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (500)
T PRK09584 152 FTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVAL 231 (500)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHH
Confidence 99999999999999999999999989999999998877776665554444333222 22222222111 00000
Q ss_pred H-HhhhcccCCCCCC-Cccccchh--hhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhh
Q 035554 264 S-LRKINLEMPTNGG-GLFEVHVR--EYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLS 339 (562)
Q Consensus 264 ~-~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 339 (562)
. ........++... ........ .............++.+.+....+.. ..+.......|...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~i~f~~~~~q~~~ 297 (500)
T PRK09584 232 IAIATWLLHNQEIARMALGVVALGIVVIFGKEAFAMKGAARRKMIVAFILML--------------EAIIFFVLYSQMPT 297 (500)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhcc
Confidence 0 0000000000000 00000000 00000000000000111100000000 00000111122233
Q ss_pred HHHHHh-hhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 035554 340 LFVEQG-AAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGI 418 (562)
Q Consensus 340 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~ 418 (562)
.+..+. ...+.+..++.+|++.++++|++.++++.|+.+++. +|.++ |+++..++.+|+++.+++++....
T Consensus 298 ~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~----~~l~~----r~~~~~~~~~G~~l~~l~f~~l~~ 369 (500)
T PRK09584 298 SLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIY----NKMGD----RLPMPHKFAIGMVLCSGAFLVLPL 369 (500)
T ss_pred HHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHH----HHhCc----CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 333332 234445567788999999999999999999998643 34433 245788999999999999988877
Q ss_pred HHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035554 419 VEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVV 498 (562)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i 498 (562)
.... .. +....+.+|+++.+++.++||++.+|...+++.+.+|+++||+++|++.+..++|+.++..+....
T Consensus 370 ~~~~----~~----~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~ 441 (500)
T PRK09584 370 GAKF----AN----DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLM 441 (500)
T ss_pred HHHh----cC----CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6322 11 123467889999999999999999999999999999999999999999999999998888776532
Q ss_pred HhhhhcCCCCCCCCCCCC-chhhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 035554 499 MVLTTKNGKPGWVPPNLN-DGHLDRFFFLSATVTAMNLGVFVVCARRYKSI 548 (562)
Q Consensus 499 ~~~~~~~~~~~w~~~~l~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 548 (562)
.. . .-..+... ..++..+|..+++++++..+++++..++.++.
T Consensus 442 ~~-~------~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~ 485 (500)
T PRK09584 442 AV-P------DNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRM 485 (500)
T ss_pred cc-c------cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 0 00001111 22367888888888877777777766665543
No 7
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=99.95 E-value=1.6e-24 Score=236.55 Aligned_cols=334 Identities=23% Similarity=0.388 Sum_probs=245.3
Q ss_pred HHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhccccc
Q 035554 49 LAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLL 128 (562)
Q Consensus 49 ~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (562)
++|||+...+.+|+++.+|++..++..+...+.....+.++++|+++|+++||+|++.++.+++.+|.+++++.+. |..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~~~ 79 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-PSS 79 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-ccc
Confidence 4789999999999999999999999999999999999999999999999999999999999999999988887532 210
Q ss_pred CCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhh
Q 035554 129 RPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSET 208 (562)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~ 208 (562)
.........+++..+.++|.|+..|+..++.+|+++++++ +.|.++++++|+++|+|+.+++.
T Consensus 80 --------------~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~~ 142 (654)
T TIGR00926 80 --------------GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLISTI 142 (654)
T ss_pred --------------ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 0012345577889999999999999999999999986442 22789999999999999999999
Q ss_pred hhhhcccc-------cchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCCCCCCCccc
Q 035554 209 VLVYAENM-------GYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGGGLFE 281 (562)
Q Consensus 209 ~~~~l~~~-------~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (562)
+.+++.+. .+|+.+|.+++++++++++++....+++++++|.+++..+..++...+.+++....... ....+
T Consensus 143 i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~-~~~~~ 221 (654)
T TIGR00926 143 ITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH-WPLHW 221 (654)
T ss_pred HHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc-cchhH
Confidence 99998743 36999999999999999998888777777666766666666666666665532211110 00111
Q ss_pred cchhhhhccCcccccccCch-hHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCcccccCcc
Q 035554 282 VHVREYEANGTRRILHTNDF-KFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSNFQIPPA 360 (562)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (562)
.+.. .........+.. +.+....+.. ++ .....+..|..+.+..|...++.++.++.+|+.
T Consensus 222 ld~a----~~~~~~~~V~evkrll~il~l~i-------------~~-~ifw~~~~Q~~s~~~~qa~~m~~~l~g~~ip~~ 283 (654)
T TIGR00926 222 LDYA----KDKHDIRMIRSTKRLLRVLVLFI-------------PL-PMFWALFDQQGSRWTLQATRMDGDVGGFEIQPD 283 (654)
T ss_pred HHHh----ccccccchHHHHHHHHHHHHHHH-------------HH-HHHHHHHhcchhHHHHHHHHhcCccCCEecCHH
Confidence 1100 000000000000 1111110000 00 111123345666677777777777767888999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035554 361 SMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRR 423 (562)
Q Consensus 361 ~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~ 423 (562)
.++.+|++.++++.|+.+..+.|..+|++. ++++..++++|+++.+++++.....+..+
T Consensus 284 ~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~----~ls~l~k~~iG~~la~la~~va~~ve~~~ 342 (654)
T TIGR00926 284 QMQVVNPLLILIFVPIFDYIVYPAIAKCGT----RFTSLRKMAVGGLLAALSFFVAALVQLKV 342 (654)
T ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHHhcCC----CCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999878887766533 46789999999999999998887776655
No 8
>PRK12382 putative transporter; Provisional
Probab=99.93 E-value=3.7e-23 Score=216.54 Aligned_cols=375 Identities=10% Similarity=0.029 Sum_probs=241.6
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
.+.++.+.+..++...+.....+.+|.|+.+++|+|..+.|++.+.+.++..+++++.|+++|| +||||++..+.+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~ 92 (392)
T PRK12382 14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQ-YGAKRSALQGMLACG 92 (392)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHh-hcchHHHHHHHHHHH
Confidence 3677777778888888888888999999999999999999999999999999999999999999 799999999988776
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.+........+. ....+.+.++++|+++|++.+...+...+++.|.+|+++ |+++++
T Consensus 93 ~~~~~~~~~~~~~~---------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~ 151 (392)
T PRK12382 93 LAGLAYLLAAILPV---------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMS 151 (392)
T ss_pred HHHHHHHhhhcccc---------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhh
Confidence 66544332211111 001247788999999999999988888899999999888 999999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCC
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMP 273 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (562)
+++.+.++|..++|.+++++.+..||+..+.+..+..++.... .. +.++.+++++...+..+.. +
T Consensus 152 ~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~----~------- 216 (392)
T PRK12382 152 WNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAF---NG-TVRKVPAHAGERPSLWSVV----G------- 216 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH---HH-hccCCCCCcccCchHHHHH----H-------
Confidence 9999999999999999999988889998777655433322221 11 1111111100000000000 0
Q ss_pred CCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCc
Q 035554 274 TNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVS 353 (562)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (562)
..+......... ......+..+.+.|..+. +.+
T Consensus 217 ---------------------------~~~~~~~~~~l~---------------~~~~~~~~~~~~~~~~~~-~~~---- 249 (392)
T PRK12382 217 ---------------------------LIWKPGLGLALQ---------------GVGFAVIGTFVSLYFASK-GWA---- 249 (392)
T ss_pred ---------------------------HHHHhHHHHHHH---------------HHHHhHHHHHHHHHHHhc-CCc----
Confidence 000000000000 000000111233333321 100
Q ss_pred ccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 035554 354 NFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEE 433 (562)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (562)
+.+.......+..++..++.+ .+.+|+++ .+.+..+..+.+++.......
T Consensus 250 ----~~~~~~~~~~~~~~~~~~~~g----~l~~r~g~--------~~~~~~~~~~~~~~~~~~~~~-------------- 299 (392)
T PRK12382 250 ----MAGFTLTAFGGAFVLMRVLFG----WMPDRFGG--------VKVAIVSLLVETVGLLLLWLA-------------- 299 (392)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHH----HHHHhcCC--------CeehHHHHHHHHHHHHHHHHc--------------
Confidence 111111111222222223333 23334433 123455566666665544332
Q ss_pred CccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCC
Q 035554 434 TSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPP 513 (562)
Q Consensus 434 ~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~ 513 (562)
.+.+...+..++.+++.+...|.......+..|+++||+++|++++...+|..+++.+.+.+.+..
T Consensus 300 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~----------- 365 (392)
T PRK12382 300 ---PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF----------- 365 (392)
T ss_pred ---ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 234455667788899999888888888999999999999999999999999999999998776522
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 035554 514 NLNDGHLDRFFFLSATVTAMNLGVFVVC 541 (562)
Q Consensus 514 ~l~~~~~~~~f~~~~~~~~~~~~~~~~~ 541 (562)
+++..|.+.+++.+++.+..+..
T Consensus 366 -----g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 366 -----GYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred -----CchHHHHHHHHHHHHHHHHHHhh
Confidence 23567777777777766665544
No 9
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.93 E-value=7.6e-23 Score=214.68 Aligned_cols=377 Identities=12% Similarity=0.019 Sum_probs=247.5
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
+|.+..+.+..+...++.....+.++.|+++++|.|..+.|++.+.+.++..+++++.|+++|| +||||++..+.++..
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~ 92 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADT-LGPKKAVVFGLCGCA 92 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhc-cCCcchHHHHHHHHH
Confidence 3788888999999999999999999999999999999999999999999999999999999999 799999999998888
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.+.+.++....+ ....+...+++.|+++|++.+...+...++..|++|+++ |+++.+
T Consensus 93 ~~~~~~~~~~~~~~---------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~ 151 (399)
T PRK05122 93 LSGLLYLLAGLLAA---------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVIS 151 (399)
T ss_pred HHHHHHHHhhhhhc---------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchh
Confidence 77666554411010 001236678999999999999999999999999998888 899999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCC
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMP 273 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (562)
++....++|..+++.+++++.+..||+..+++..+..++..+.. .+ .+..++++++.....+.. +
T Consensus 152 ~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~----~------- 216 (399)
T PRK05122 152 WNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA---RP-RPAVPPVKGERLPFRRVL----G------- 216 (399)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH---hc-CCCCCCCCccchhHHHHH----H-------
Confidence 99999999999999999999888899998887665544332222 11 111111110000000000 0
Q ss_pred CCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCc
Q 035554 274 TNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVS 353 (562)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (562)
+ .+........ . .........+.+.|..+ .+.+
T Consensus 217 -------------------------~--~~~~~~~~~~-~--------------~~~~~~~~~~~~~~~~~-~~~~---- 249 (399)
T PRK05122 217 -------------------------R--VWPYGMGLAL-A--------------SIGFGTIATFITLYYAA-RGWD---- 249 (399)
T ss_pred -------------------------H--HHHHHHHHHH-H--------------HHHHHHHHHHHHHHHHH-cccc----
Confidence 0 0000000000 0 00000011123333322 1111
Q ss_pred ccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 035554 354 NFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEE 433 (562)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (562)
..+.......+..++..++.+ .+.+|.+ +.+.+..+.++.+++.......
T Consensus 250 ----~~~~~~~~~~~~~~~~~~~~g----~l~~r~~--------~~~~~~~~~~~~~~~~~~~~~~-------------- 299 (399)
T PRK05122 250 ----GAALALTLFGVAFVGARLLFG----NLINRLG--------GLRVAIVSLLVEILGLLLLWLA-------------- 299 (399)
T ss_pred ----cchHHHHHHHHHHHHHHHHHH----HHHHHhc--------cHHHHHHHHHHHHHHHHHHHHh--------------
Confidence 011111112222222222222 2333432 2234555666666665554432
Q ss_pred CccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCC
Q 035554 434 TSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPP 513 (562)
Q Consensus 434 ~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~ 513 (562)
.+.+..++..++.|++.+...|.......+..|++.||+++|+++....+|..+++.+.+.+.+.
T Consensus 300 ---~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~------------ 364 (399)
T PRK05122 300 ---PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW------------ 364 (399)
T ss_pred ---ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 24445566788999999988888888888999999999999999999999999998888866542
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 035554 514 NLNDGHLDRFFFLSATVTAMNLGVFVVCAR 543 (562)
Q Consensus 514 ~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 543 (562)
.+++..|.+.+++++++.+..++..+
T Consensus 365 ----~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 365 ----FGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred ----cCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 13466777777777776666555443
No 10
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.93 E-value=8.8e-23 Score=214.26 Aligned_cols=348 Identities=17% Similarity=0.121 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHH
Q 035554 38 TLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLL 117 (562)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~ 117 (562)
+.++...++.+.+++.+.+.++.|+++++|+|..+.|.+.+.+.+...+..+++|+++|| +|||+++..+.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr-~g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADR-FGAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hCchHHHHHHHHHHHHHHH
Confidence 677788999999999999999999999999999999999999999999999999999999 7999999999999999888
Q ss_pred HHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHH
Q 035554 118 GLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYI 197 (562)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 197 (562)
++.+. + +.+.+++.+++.|++.+...|+..+++.|.+|+++ |+++.++++.
T Consensus 92 ~~~~~---~--------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~ 142 (400)
T PRK11646 92 TMAIA---H--------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMM 142 (400)
T ss_pred HHHHh---c--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHH
Confidence 87765 2 37778899999999999889999999999998877 9999999999
Q ss_pred HHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCCCCCC
Q 035554 198 ALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGG 277 (562)
Q Consensus 198 ~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (562)
..++|..++|.+++++. ..+|++.|++.++..++..++.....++.+. ++..++.+ +.....+++
T Consensus 143 ~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~---------- 207 (400)
T PRK11646 143 QDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-STVRTPVR---EGMTRVLRD---------- 207 (400)
T ss_pred HHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-cccchhhH---HHHHHHHcC----------
Confidence 99999999999999998 6799999998777655544433322221100 00000000 000000000
Q ss_pred CccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCccccc
Q 035554 278 GLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSNFQI 357 (562)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (562)
.. ++......... ...........+.|..+..+ + ..
T Consensus 208 ---------------------~~--~~~~~~~~~~~--------------~~~~~~~~~~~p~~~~~~~~-~------~~ 243 (400)
T PRK11646 208 ---------------------KR--FVTYVLTLTGY--------------YMLAVQVMLMLPIMVNDIAG-S------PS 243 (400)
T ss_pred ---------------------ch--HHHHHHHHHHH--------------HHHHHHHHHhhhhhHHhhcC-C------ch
Confidence 00 00000000000 00000011123444332211 1 00
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccc
Q 035554 358 PPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSL 437 (562)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (562)
..+.+.....+....... +.. ++..|| ....+.+..+.++.+++....+.. .
T Consensus 244 ~~g~l~~~~~~~~~~~~~-------~~~-~~~~~r---~~~~~~~~~~~~~~~~~~~~l~~~-----------------~ 295 (400)
T PRK11646 244 AVKWMYAIEACLSLTLLY-------PIA-RWSEKR---FRLEHRLMAGLLIMSLSMFPIGMV-----------------S 295 (400)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHH-HHHHHh---cchhHHHHHHHHHHHHHHHHHHHh-----------------h
Confidence 011111111111111111 111 221111 123334566666666666555443 2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 035554 438 SIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLT 502 (562)
Q Consensus 438 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~ 502 (562)
+.+++....++++++++...|...+++.+.+|++.||+++|++++..++|..+|+.+.|.+.+.+
T Consensus 296 ~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~ 360 (400)
T PRK11646 296 NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG 360 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence 33444556678889999999999999999999999999999999999999999999999887643
No 11
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.93 E-value=4.3e-23 Score=217.98 Aligned_cols=398 Identities=11% Similarity=0.042 Sum_probs=250.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.+..++...++..++.......+|.+.+ +++.+..+.|++.+.+.++..++.++.|+++|| +|||+++..+.++..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr-~g~~~~l~~~~~~~~~ 94 (417)
T PRK10489 17 PAFRAVFIARFISIFGLGLLGVAVPVQIQ-MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADR-YDRKKLILLARGTCGL 94 (417)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhh-cCCceEEEehHHHHHH
Confidence 34555666677777777667777777765 577799999999999999999999999999999 7999999988887777
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.+++......+ ..+.+.+++.+++.|++.+...++..+++.|.+|+++ |+++.++
T Consensus 95 ~~~~~~~~~~~~------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 150 (417)
T PRK10489 95 GFIGLALNAFLP------------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAI 150 (417)
T ss_pred HHHHHHHHHHcC------------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHH
Confidence 666554321001 1136778889999999988888888999999998777 8899999
Q ss_pred HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCCC
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPT 274 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (562)
.+...++|..+||.+++.+.+..+|++.|++.++..+++.+..+..++..+.+++++++.++..+......++
T Consensus 151 ~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 223 (417)
T PRK10489 151 TMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPPPQPREHPLRSLLAGFRFLLAS------- 223 (417)
T ss_pred HHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccccchHHHHHHHHHHHcC-------
Confidence 9999999999999999999887899999988777666555444333211110000011111000000000000
Q ss_pred CCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCcc
Q 035554 275 NGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSN 354 (562)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (562)
......-..... ......+..+.+.|..+..+.+..
T Consensus 224 ------------------------~~~~~~~~~~~~-----------------~~~~~~~~~~~p~~~~~~~g~~~~--- 259 (417)
T PRK10489 224 ------------------------PVVGGIALLGGL-----------------LTMASAVRVLYPALADEVWQMGAA--- 259 (417)
T ss_pred ------------------------hHHHHHHHHHHH-----------------HHHHHhHHHhhHHHHHhccCCChh---
Confidence 000000000000 000001111334444432222211
Q ss_pred cccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q 035554 355 FQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEET 434 (562)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (562)
..+.+.....+..++...+.+ +..+|+ .+.+.+..+.++.++++......
T Consensus 260 ---~~g~~~~~~~~g~~ig~~~~~--------~l~~~~----~~~~~l~~~~~~~~~~~~~~~~~--------------- 309 (417)
T PRK10489 260 ---QIGLLYAAVPLGAALGALTSG--------WLAHSA----RPGLLMLLSTLGSFLAVGLFGLM--------------- 309 (417)
T ss_pred ---HhHHHHHHHHHHHHHHHHHHH--------Hhhhcc----CcchHHHHHHHHHHHHHHHHHcc---------------
Confidence 112222222222323322222 222211 12224455556665665544332
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCC
Q 035554 435 SSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPN 514 (562)
Q Consensus 435 ~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~ 514 (562)
.+.+......++.|++.+...+..+++..+..|++.||+++|+++....+|..+|+.+.|.+.+..
T Consensus 310 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~------------ 375 (417)
T PRK10489 310 --PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM------------ 375 (417)
T ss_pred --chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh------------
Confidence 344455667788888888888888899999999999999999999999999999999999776532
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhcc
Q 035554 515 LNDGHLDRFFFLSATVTAMNLGVFVVCARRYKSISLQKQEGES 557 (562)
Q Consensus 515 l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (562)
+....+...+++.++..++.....++++++++|+.++|.
T Consensus 376 ----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (417)
T PRK10489 376 ----TPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDA 414 (417)
T ss_pred ----chhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCC
Confidence 123456666666666666666667888888887776554
No 12
>PRK03545 putative arabinose transporter; Provisional
Probab=99.93 E-value=1.6e-22 Score=211.75 Aligned_cols=374 Identities=13% Similarity=0.052 Sum_probs=237.8
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
|...+.+.+..++.....+...+.+| .+.+++|.|..+.|++.+.+.++..++.++.|+++|| +||||++..+.++..
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~ 85 (390)
T PRK03545 8 WLRVVTLALAAFIFNTTEFVPVGLLS-DIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSN-VERRKLLIGLFVLFI 85 (390)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHcchH-HHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHH
Confidence 44556656655555444444434344 5677899999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.+.+.++ + +.+.++++|+++|++.+...|...+++.|++|+++ |+++++
T Consensus 86 ~~~~~~~~~---~--------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g 136 (390)
T PRK03545 86 ASHVLSALA---W--------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALS 136 (390)
T ss_pred HHHHHHHHh---c--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHH
Confidence 998888776 2 37889999999999999888999999999999888 999999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCC
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMP 273 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (562)
++..+.++|..++|.+++.+.+..||++.|++.+++.++..+..+...|+.+++ ++++.++ ....+++
T Consensus 137 ~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~------ 204 (390)
T PRK03545 137 LLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE--HSGSLKS----LPLLFRR------ 204 (390)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CcchHHH----HHHHHhC------
Confidence 999999999999999999998888999999998876665544433322221110 0011000 0000010
Q ss_pred CCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCc
Q 035554 274 TNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVS 353 (562)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (562)
......-...... .........+.+.+..+..+.+..
T Consensus 205 -------------------------~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~l~~~~g~s~~-- 241 (390)
T PRK03545 205 -------------------------PALVSLYLLTVVV----------------VTAHFTAYSYIEPFVQQVAGLSEN-- 241 (390)
T ss_pred -------------------------cHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHhcCCCcc--
Confidence 0000000000000 000000011222233322122111
Q ss_pred ccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 035554 354 NFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEE 433 (562)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (562)
..+.......+..++...+. .+..+|. ..+.+..+..+..++.......
T Consensus 242 ----~~~~~~~~~~~~~~~g~~~~--------g~l~dr~-----~~~~~~~~~~~~~~~~~~l~~~-------------- 290 (390)
T PRK03545 242 ----FATLLLLLFGGAGIIGSVLF--------SRLGNRH-----PSGFLLIAIALLLVCLLLLLPA-------------- 290 (390)
T ss_pred ----HHHHHHHHHHHHHHHHHHHH--------HHHhhcc-----chhHHHHHHHHHHHHHHHHHHH--------------
Confidence 11111111122222222222 2332211 1123444544444444333221
Q ss_pred CccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCC
Q 035554 434 TSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPP 513 (562)
Q Consensus 434 ~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~ 513 (562)
..+.+.++...++.|++.+...+.....+.+..| +.+++++|+++....+|..+|+.+.|.+.+.
T Consensus 291 --~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~------------ 355 (390)
T PRK03545 291 --ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH------------ 355 (390)
T ss_pred --hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------
Confidence 1344556667888899988888888888888887 5789999999999999999999998876652
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 035554 514 NLNDGHLDRFFFLSATVTAMNLGVFVVCAR 543 (562)
Q Consensus 514 ~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 543 (562)
.++...|...+++.+++++.++...+
T Consensus 356 ----~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 356 ----LGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred ----cChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 23356777777777777777766553
No 13
>PRK10054 putative transporter; Provisional
Probab=99.93 E-value=4.9e-23 Score=215.82 Aligned_cols=174 Identities=15% Similarity=0.153 Sum_probs=152.4
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 035554 33 GWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFS 112 (562)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~ 112 (562)
.+|+.+.+++..++...+++...++++.|+++++|++..+.|++.+.+.++..++.++.|+++|| +|||+++.++.++.
T Consensus 5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~k~~~~~~~~~~ 83 (395)
T PRK10054 5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADK-FDKKRYMLLAITAF 83 (395)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999 79999999999888
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhH
Q 035554 113 IIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192 (562)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 192 (562)
.++.+++.+.. +.+.+++++.+.+.+.+...+...+...|.+|+++ |++++
T Consensus 84 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 134 (395)
T PRK10054 84 ASGFIAIPLVN-----------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIF 134 (395)
T ss_pred HHHHHHHHHHh-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHH
Confidence 88887777652 35667777888887777778888999999998777 89999
Q ss_pred HHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHH
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSL 237 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~ 237 (562)
++.+...++|.+++|.+++++.+ .+|+..|++.+++.++..++.
T Consensus 135 g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~ 178 (395)
T PRK10054 135 SLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFI 178 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875 689999998887766665443
No 14
>PRK10504 putative transporter; Provisional
Probab=99.92 E-value=3.5e-22 Score=214.42 Aligned_cols=178 Identities=12% Similarity=0.033 Sum_probs=154.3
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
.|.++.+.+..++..+..+.+.+.+|.|.+ ++|.+..+.+++.+.+.++..++.++.|+++|| +||||++..+.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~ 86 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADR-VGVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHH
Confidence 457788888889999999999998888876 599999999999999999999999999999999 799999999988888
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.+++.++ + +.+.++++|+++|++.+...|...+++.|.+|+++ |+++++
T Consensus 87 ~~~~~~~~~---~--------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 137 (471)
T PRK10504 87 LGSLFCALS---G--------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMT 137 (471)
T ss_pred HHHHHHHHh---C--------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHH
Confidence 888776654 2 36778899999999999999999999999998777 889999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCc
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTL 242 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~ 242 (562)
+.+...++|..++|.+++++.+..+|++.|++..+...++.++.....+
T Consensus 138 ~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 138 FVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999998899999999988766655555444333
No 15
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.92 E-value=1.1e-21 Score=206.25 Aligned_cols=176 Identities=18% Similarity=0.178 Sum_probs=147.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 035554 31 TGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQA 110 (562)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~ 110 (562)
+.+|.......+..+++.+..+......| .+.+++|+++.+.+++.+.+.++..++.++.|+++|| +||||++..+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~ 88 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADR-IGRKRILIVSVA 88 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHH
Confidence 34555666666777777776666665555 4566799999999999999999999999999999999 799999999998
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
+..++.+++.++ + +.+.+++.|++.|++.+...+...+++.|.+|+++ |++
T Consensus 89 ~~~~~~~~~~~~---~--------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~ 139 (406)
T PRK11551 89 LFGLFSLATAQA---W--------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGT 139 (406)
T ss_pred HHHHHHHHHHHh---c--------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHH
Confidence 888887776665 2 37778899999999999999999999999999888 999
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHH
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSL 237 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~ 237 (562)
+.++++...++|+.+++.+++.+.+..+|+..|++.+++.++..++.
T Consensus 140 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK11551 140 AVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLL 186 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888899999998776555444433
No 16
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.91 E-value=6.2e-23 Score=204.87 Aligned_cols=409 Identities=14% Similarity=0.087 Sum_probs=258.6
Q ss_pred CCccccCCCchHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 035554 25 PAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMV---LFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGR 101 (562)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr 101 (562)
|..+..+.+.|-.+.+++..++.+.++|.+.-++. +++.++.++|..|.|.+.+++.+.+.++..+.|.++|| .+.
T Consensus 15 p~~~~~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr-~np 93 (448)
T COG2271 15 PASEIDKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDR-SNP 93 (448)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCC
Confidence 44444455556778888888899999998876654 68888999999999999999999999999999999999 799
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCC
Q 035554 102 YLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEED 181 (562)
Q Consensus 102 k~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 181 (562)
|+.+.+++++.++..+++.+.. +...+.+...+.|..+|.-.|++...++.+++.++
T Consensus 94 r~fm~~gLilsai~nil~Gfs~-----------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e 150 (448)
T COG2271 94 RYFMAFGLILSAIVNILFGFSP-----------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE 150 (448)
T ss_pred ceeehHHHHHHHHHHHHHhhhh-----------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc
Confidence 9999999999999999998872 37788899999999999999999999999999999
Q ss_pred chhhhhhhhhHHHHHHHHhHHHHHHhhhh--hhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHH
Q 035554 182 PKEKKSKTSFYSYFYIALNLGCLFSETVL--VYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQ 259 (562)
Q Consensus 182 ~~~~~~r~~~~~~~~~~~~lg~~~~~~~~--~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (562)
||+..++.+.+.|+|+++.|.+. +++..+++|+.+|++++++.++..+..+...++ +|+...+..+.+
T Consensus 151 ------RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd----~Pqs~GLP~ie~ 220 (448)
T COG2271 151 ------RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRD----RPQSEGLPPIEE 220 (448)
T ss_pred ------cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCC----CccccCCCCHHH
Confidence 99999999999999999999999 898888899999999998776555554443332 222111111000
Q ss_pred HHHHHHhhhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehh--------
Q 035554 260 VIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTV-------- 331 (562)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------- 331 (562)
. + ++ +.+.+ + + ..+++ ..+.++.+ .... . ..+..|.++..
T Consensus 221 ~-----~--~d-----~~e~~--~-~-~~~~~--~ls~~~i~--~~YV-----L-------~Nk~iW~la~a~vfvYivR 268 (448)
T COG2271 221 Y-----R--GD-----PLEIY--E-E-EKENE--GLTAWQIF--VKYV-----L-------KNKLIWLLALANVFVYVVR 268 (448)
T ss_pred h-----h--cC-----chhhh--h-h-hccCC--CccHHHHH--HHHH-----H-------cChHHHHHHHHHHHHHHHH
Confidence 0 0 00 00000 0 0 00000 01111100 0000 0 00011111110
Q ss_pred hhhhhhhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHH
Q 035554 332 TQVEEMLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATV 411 (562)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~ 411 (562)
..+.++.|.|+.|..+.+.. .....-...-...+....+.+++.+.+.+. + | .+... +-+++..+
T Consensus 269 ~gi~dW~p~YL~e~k~~s~~------~a~~a~~lfE~agl~G~Ll~GwlSDklfkg--r-R----~p~~~--i~~~~i~~ 333 (448)
T COG2271 269 YGINDWGPLYLSEVKGFSLV------KANWAISLFEVAGLPGTLLAGWLSDKLFKG--R-R----GPMAL--IFMLLITA 333 (448)
T ss_pred HHHhhhHHHHHHHhcCCCHH------HHHHHHHHHHHHhhHHHHHHHHHHHHhccc--c-c----chHHH--HHHHHHHH
Confidence 12344888999886554432 111112222334444444555554433322 1 1 12211 22222333
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhH--HHHHHhhCCchhHHHHHHHHHHHHHH-HH
Q 035554 412 AMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQ--MEFFASQIPNGLKSLGIALSMSSTAI-GT 488 (562)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~--~~~~~~~~P~~~rg~~~gl~~~~~~l-g~ 488 (562)
++..+... .+.+.+.. ..+++.+|.-...|.. -..+.|.+|++-.|+++|+..++..+ |.
T Consensus 334 ~~~~~w~~---------------~~~~~~l~--~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga 396 (448)
T COG2271 334 SLVLYWLA---------------PNGSYLLD--AILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGA 396 (448)
T ss_pred HHHHHHcC---------------CCccHHHH--HHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhH
Confidence 33333221 12233333 3344444444444432 23456999999999999999999999 88
Q ss_pred HHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 035554 489 YVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARRYKS 547 (562)
Q Consensus 489 ~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 547 (562)
.++....+.+.+. .+| ...|.++.+.++++.+.++.+.+..++
T Consensus 397 ~~a~~~~g~i~d~------~gW----------~g~Fi~~~~~a~l~~lll~~~~~~~~~ 439 (448)
T COG2271 397 ALAGLPLGYIADT------WGW----------DGGFIVLSIAALLAILLLLPVWNAEER 439 (448)
T ss_pred HhcCCcceeeEec------CCC----------cchHHHHHHHHHHHHHHHHHHHhhcch
Confidence 8887776654331 245 557777777777777777766654333
No 17
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.91 E-value=6.4e-22 Score=210.06 Aligned_cols=168 Identities=13% Similarity=0.049 Sum_probs=142.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+..+..++..++..+..+.+...+|.+. +++|+|..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++..+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~~~~~~~~~~~ 100 (434)
T PRK11663 23 HILITMYLGYALFYFTRKSFNAAMPEML-ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDR-SNARYFMGIGLIATGI 100 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh-cCCchhHHHHHHHHHH
Confidence 3444455555566665566666666655 4699999999999999999999999999999999 7999999999999999
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.+++.++ + +++.+++.|++.|++.|...+...+++.|++|+++ |+++.++
T Consensus 101 ~~~~~~~~---~--------------------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~ 151 (434)
T PRK11663 101 INILFGFS---S--------------------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAI 151 (434)
T ss_pred HHHHHHHH---h--------------------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHH
Confidence 88887776 2 36778888999999999888999999999999888 9999999
Q ss_pred HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHH
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILA 233 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~ 233 (562)
++.+.++|..++|.+++++.+.++|++.|++.++..++.
T Consensus 152 ~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~ 190 (434)
T PRK11663 152 WNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVV 190 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 999999999999999999988899999999877654433
No 18
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.91 E-value=4.7e-22 Score=206.81 Aligned_cols=153 Identities=18% Similarity=0.124 Sum_probs=135.1
Q ss_pred HHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCC
Q 035554 57 NMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKI 136 (562)
Q Consensus 57 ~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (562)
....++.+++|++..+.+++.+.+.++..++.++.|+++|| +|||+++..+.++..++.+++.++ +
T Consensus 15 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~---~---------- 80 (399)
T TIGR00893 15 FAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDR-FGARKTLAVFIVIWGVFTGLQAFA---G---------- 80 (399)
T ss_pred HhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHh-cCcceeeHHHHHHHHHHHHHHHHH---c----------
Confidence 34455788999999999999999999999999999999999 799999999999998888888776 2
Q ss_pred CCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccc
Q 035554 137 GQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENM 216 (562)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~ 216 (562)
+.+.++++|++.|++.+...+...+++.|.+|+++ |++.+++.+...++|..++|.+++++.+.
T Consensus 81 ----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 144 (399)
T TIGR00893 81 ----------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIH 144 (399)
T ss_pred ----------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHh
Confidence 37789999999999999999999999999999877 99999999999999999999999998888
Q ss_pred cchhHHHHHHHHHHHHHHHHHHh
Q 035554 217 GYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 217 ~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
.+|++.|++.++..++..+..+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~ 167 (399)
T TIGR00893 145 FSWQWAFIIEGVLGIIWGVLWLK 167 (399)
T ss_pred CCchHHHHHHHHHHHHHHHHhhh
Confidence 89999999887766655554443
No 19
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.91 E-value=8.2e-21 Score=192.29 Aligned_cols=379 Identities=14% Similarity=0.067 Sum_probs=254.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 035554 31 TGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQA 110 (562)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~ 110 (562)
+..|..++.+.++.|+....=+.....+|. +.+++|.|..++|++++.|..+..++.|+...+.|| +.||++++....
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~-iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r-~~Rr~lLl~~l~ 86 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLLPP-IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGR-LERRRLLLGLLA 86 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhchHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cchHHHHHHHHH
Confidence 445678888899999998888888887776 677899999999999999999999999999999999 799999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
+++++.++++++ |+ ++.++++|++.|+..|.+++...++..++.|+++ |++
T Consensus 87 lFi~~n~l~alA---p~--------------------f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~ 137 (394)
T COG2814 87 LFIVSNLLSALA---PS--------------------FAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGR 137 (394)
T ss_pred HHHHHHHHHHHh---cc--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhh
Confidence 999999999998 54 9999999999999999999999999999999999 999
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCC-CCCchhHHHHHHHHHHhhhc
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKP-SGNPLSRFSQVIVASLRKIN 269 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 269 (562)
+.++...+..++..+|..++.++.+.+|||..|++..++.+++.+..+...| .++.++ .+.+.++..+.+ |++
T Consensus 138 Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP-~~~~~~~~~~~~~~~~~~l----~~p- 211 (394)
T COG2814 138 ALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP-PSEISGSLPGPLRTLLRLL----RRP- 211 (394)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC-CccCCCCCCcchhHHHHHh----cCc-
Confidence 9999999999999999999999999999999999988888777777666555 111111 111111111111 110
Q ss_pred ccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhcc
Q 035554 270 LEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMN 349 (562)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 349 (562)
+. +......... ....+....++..++++..+.+
T Consensus 212 -----------------------------~v--~~~l~~t~l~---------------~~g~F~~ftYi~P~L~~v~g~s 245 (394)
T COG2814 212 -----------------------------GV--LLGLLATFLF---------------MTGHFALYTYIRPFLESVAGFS 245 (394)
T ss_pred -----------------------------hH--HHHHHHHHHH---------------HcchhhhHHhHHHHHHHccCCC
Confidence 00 0000000000 0000000112222333322222
Q ss_pred CCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 035554 350 TGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASF 429 (562)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~ 429 (562)
.. ..+..-..+.+..++... +..|..+| ++.+.+....+++++.++...+.
T Consensus 246 ~~------~vs~~Ll~~Gv~~~~Gn~--------~gGrl~dr-----~~~~~l~~~~~l~a~~~l~l~~~---------- 296 (394)
T COG2814 246 VS------AVSLVLLAFGIAGFIGNL--------LGGRLADR-----GPRRALIAALLLLALALLALTFT---------- 296 (394)
T ss_pred Hh------HHHHHHHHHHHHHHHHHH--------HHhhhccc-----cchhHHHHHHHHHHHHHHHHHHh----------
Confidence 11 111111222222222222 22344441 24445566667777776665554
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCC
Q 035554 430 GGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPG 509 (562)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~ 509 (562)
..+.+..+...++.+++........+....+.. ++.++.+++++....++|..+|..+.|.+.+.
T Consensus 297 ------~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~-------- 361 (394)
T COG2814 297 ------GASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDA-------- 361 (394)
T ss_pred ------cchHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 233344445555555554444444444444433 47799999999999999999999999987762
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 035554 510 WVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARR 544 (562)
Q Consensus 510 w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 544 (562)
.++....+.-+++.+++.++.+...++
T Consensus 362 --------~g~~~~~~~~a~l~~~a~~~~~~~~~~ 388 (394)
T COG2814 362 --------LGYAATGWVGAALLLLALLLALLSARK 388 (394)
T ss_pred --------hchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 234556667677777776666655544
No 20
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.91 E-value=9.8e-22 Score=202.66 Aligned_cols=358 Identities=13% Similarity=0.033 Sum_probs=231.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHH
Q 035554 39 LLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLG 118 (562)
Q Consensus 39 ~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~ 118 (562)
.++...++..++.......+|.|..+ ++.+..+.+++.+.+.++..++.++.|+++|| +||||++..+.++..++.++
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~ 80 (365)
T TIGR00900 3 LLFAAQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADR-YDRKKVMIGADLIRAVLVAV 80 (365)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHh-hchhHHHHHHHHHHHHHHHH
Confidence 45667777777777777888887764 78999999999999999999999999999999 79999999999888888777
Q ss_pred HHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHH
Q 035554 119 LSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIA 198 (562)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 198 (562)
+.+....+ ..+.+.++++|++.|++.+...|...+++.|++|+++ |++..++.+..
T Consensus 81 ~~~~~~~~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 136 (365)
T TIGR00900 81 LPFVALLG------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAV 136 (365)
T ss_pred HHHHHHcC------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHH
Confidence 76652111 1247889999999999999999999999999999877 99999999999
Q ss_pred HhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchh-HHHHHHHHHHhhhcccCCCCCC
Q 035554 199 LNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLS-RFSQVIVASLRKINLEMPTNGG 277 (562)
Q Consensus 199 ~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 277 (562)
.++|..++|.+++++.+..+|++.|++.++..+++.+..+..+.+.+.+ +++++.+ +..+......+
T Consensus 137 ~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------- 204 (365)
T TIGR00900 137 RSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA-SEIQALSNAVLRDTREGIK----------- 204 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC-ccccccchhHHHHHHhHHH-----------
Confidence 9999999999999998888999999987776665554443332211111 0111100 00000000000
Q ss_pred CccccchhhhhccCcccccccCc-hhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCcccc
Q 035554 278 GLFEVHVREYEANGTRRILHTND-FKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSNFQ 356 (562)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (562)
...+++ ....-....... ...........+.+..+..+.+..
T Consensus 205 -----------------~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~----- 247 (365)
T TIGR00900 205 -----------------FVLKNPLLRTLLLLALLFN---------------LVFAPAIVALFPYVQSKYLGRGST----- 247 (365)
T ss_pred -----------------HHHcCcHHHHHHHHHHHHH---------------HHHHHHHHHHhHHHHHHHhCCchH-----
Confidence 000000 000000000000 000000001334444432222111
Q ss_pred cCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcc
Q 035554 357 IPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSS 436 (562)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (562)
..+.......+..++...+.. .+.+|.+ +.+.+..+.++.++++....+. .+
T Consensus 248 -~~~~~~~~~~~~~~~~~~~~~----~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~---------------~~ 299 (365)
T TIGR00900 248 -HYGWVLAAFGLGALLGALLLG----LLGRYFK--------RMALMTGAIFVIGLAILVVGLT---------------PP 299 (365)
T ss_pred -HHHHHHHHHHHHHHHHHHHHH----HHHHHhc--------hhHHHHHHHHHHHHHHHHHHhh---------------ch
Confidence 112222222222233333322 2222322 2223444555555555554443 01
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 035554 437 LSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMV 500 (562)
Q Consensus 437 ~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~ 500 (562)
+.+...+..++.+++.+...+...++..+.+|++.||+++|++++...++..+++.+.+.+.+
T Consensus 300 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 300 -NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667788999999999999999999999999999999999999999999999999886654
No 21
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.91 E-value=1.8e-21 Score=209.96 Aligned_cols=380 Identities=13% Similarity=0.040 Sum_probs=235.8
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
|..+..+.+..++..+-...+..-+|. +.+++|.+..+.+|+.+.|.++...+.++.|+++|| +|||+++.++.+++.
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~-i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~-~Grk~~l~~~~~~~~ 82 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPT-LSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDR-IGFKRLLMLGGTLFG 82 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHH
Confidence 345556666666666666666665555 466899999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccC-CCCCchhhhhhhhhH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQF-DEEDPKEKKSKTSFY 192 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~ 192 (562)
++.++++++ + +.+.++++|+++|+|.+...|.....+.+.+ |+++ |++++
T Consensus 83 ~~~~~~~~a---~--------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~------r~~~~ 133 (495)
T PRK14995 83 LASLAAAFS---P--------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ------RNMAL 133 (495)
T ss_pred HHHHHHHHc---C--------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH------HHHHH
Confidence 999998876 2 3788999999999999998888888887776 4445 89999
Q ss_pred HHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHH--------HHH
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVI--------VAS 264 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 264 (562)
+++....++|..++|.+++++.+..+||+.|++...+.++..++.....|+.+.++ .++.+.....+ ...
T Consensus 134 g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~ 211 (495)
T PRK14995 134 GVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYS 211 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988766665555444333322111 11111111110 011
Q ss_pred HhhhcccCCCCCCCccccchhhhhccCcccccccCchhHH-HHHH-hhhcccccccCCCC--------Cccceeehhh--
Q 035554 265 LRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFL-DRAA-IMTSADITTNEDQN--------PNQWRLCTVT-- 332 (562)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~--------~~~~~l~~~~-- 332 (562)
++.. . ......+ .-..... .... ..+.... ...... .+.+......
T Consensus 212 ~~~~--~---~~~~~~~----------------~~~~~~~~~~~~l~~f~~~e-~~~~~p~~~~~lf~~~~~~~~~~~~~ 269 (495)
T PRK14995 212 AKTA--L---KGFLSLW----------------VTSLTLLTGALLLGLFIRTQ-LAASRPMIDMRLFTHRIILSGVVMAM 269 (495)
T ss_pred HHhc--c---ccCCchH----------------HHHHHHHHHHHHHHHHHHHH-hcCCCCCcCHHHhCCcccHHHHHHHH
Confidence 1110 0 0000000 0000000 0000 0000000 000000 0000000000
Q ss_pred -------hhhhhhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHH
Q 035554 333 -------QVEEMLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIG 405 (562)
Q Consensus 333 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g 405 (562)
......+.|+++..+.+ ....+.......+...+..++.+ .+.+|.++ .+.+..|
T Consensus 270 ~~~~~~~~~~~~~~~~lq~v~g~s------~~~ag~~~~~~~~~~~~~~~~~g----~l~~r~g~--------~~~~~~g 331 (495)
T PRK14995 270 TAMITLVGFELLMAQELQFVHGLS------PLEAGMFMLPVMVASGFSGPIAG----ILVSRLGL--------RLVATGG 331 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHcCc--------hHHHHHH
Confidence 00012233333322222 11122222222333333334443 33345432 2245567
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHH
Q 035554 406 LAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTA 485 (562)
Q Consensus 406 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ 485 (562)
.++.+++........ ...+.+......++.|+|.++..++....+.+.+|++.+|.+++++++..+
T Consensus 332 ~~~~~~~~~~l~~~~--------------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 397 (495)
T PRK14995 332 MALSALSFYGLAMTD--------------FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYE 397 (495)
T ss_pred HHHHHHHHHHHHHhc--------------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHH
Confidence 776666665543331 123444556678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHh
Q 035554 486 IGTYVCSMILSVVMV 500 (562)
Q Consensus 486 lg~~lg~~l~~~i~~ 500 (562)
+|+.+|+.+.+.+..
T Consensus 398 lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 398 LGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999997754
No 22
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.90 E-value=1.1e-20 Score=198.59 Aligned_cols=382 Identities=15% Similarity=0.056 Sum_probs=239.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhh-----hhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAE-----ASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQ 109 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~-----~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~ 109 (562)
|....+.+..++...++....+.+|.|.++ +|.+..+ .|++.+++.++..++.++.|+++|| +|||+++..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~ 91 (408)
T PRK09874 14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVEQ-LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR-KGRKIMLLRSA 91 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hCcHHHHHHHH
Confidence 566777788888889988899999998864 8888654 4888899999999999999999999 79999999998
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhh
Q 035554 110 AFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKT 189 (562)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 189 (562)
++..++.+++... + +.+.+++.|++.|++.+ ..+...+++.|.+|+++ |+
T Consensus 92 ~~~~~~~~~~~~~---~--------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~ 141 (408)
T PRK09874 92 LGMGIVMVLMGLA---Q--------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SG 141 (408)
T ss_pred HHHHHHHHHHHHH---h--------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hh
Confidence 8888888776654 1 37778899999998865 45777888899998777 89
Q ss_pred hhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhc
Q 035554 190 SFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKIN 269 (562)
Q Consensus 190 ~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (562)
++.++++...++|..++|.+++.+.+..+|+..|++..++.++..+..+...++.. ++.+++.+...+.. .+
T Consensus 142 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~--- 213 (408)
T PRK09874 142 WALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENF--QPVSKKEMLHMREV---VT--- 213 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCc--ccccchhhhHHHHH---HH---
Confidence 99999999999999999999999988889999999888766655544333222211 11110000000000 00
Q ss_pred ccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhcc
Q 035554 270 LEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMN 349 (562)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 349 (562)
..........+-...... ......+....+.|..+.....
T Consensus 214 ------------------------~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~ 253 (408)
T PRK09874 214 ------------------------SLKNPKLVLSLFVTTLII----------------QVATGSIAPILTLYVRELAGNV 253 (408)
T ss_pred ------------------------hCcCCchHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHhccc
Confidence 000000000000000000 0000001112233333211100
Q ss_pred CCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 035554 350 TGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASF 429 (562)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~ 429 (562)
.. .....+.+.....+..++..+..+ .+.+|.++ .+.+..+.++.++++......
T Consensus 254 ~~---~~~~~g~~~~~~~l~~~~~~~~~g----~l~dr~g~--------~~~~~~~~~~~~~~~~~~~~~---------- 308 (408)
T PRK09874 254 SN---IAFISGMIASVPGVAALLSAPRLG----KLGDRIGP--------EKILITALIFSVLLLIPMSFV---------- 308 (408)
T ss_pred hH---HHHHHHHHHHHHHHHHHHHHHHHH----HHHhcccc--------chhHHHHHHHHHHHHHHHHHh----------
Confidence 00 000001111111122222222222 22334332 223444555444444433332
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCC
Q 035554 430 GGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPG 509 (562)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~ 509 (562)
.+.+...+..++.|++.+...|...+...+..|++.+|+.+++++....+|..+|+.+.+.+.+.
T Consensus 309 -------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~-------- 373 (408)
T PRK09874 309 -------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN-------- 373 (408)
T ss_pred -------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh--------
Confidence 23445566778889999999999999999999999999999999999999999999998876541
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 035554 510 WVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARR 544 (562)
Q Consensus 510 w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 544 (562)
.++...|.+.+++.+++.+..+...++
T Consensus 374 --------~g~~~~f~~~~~~~l~~~~~~~~~~~~ 400 (408)
T PRK09874 374 --------YGFRAVFLVTAGVVLFNAVYSWNSLRR 400 (408)
T ss_pred --------cchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134567888888887777666554433
No 23
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.90 E-value=6.2e-21 Score=203.61 Aligned_cols=172 Identities=12% Similarity=0.054 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHHhh---HHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 38 TLLLVNQGLANLAFAGV---EVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 38 ~~l~~~~~~~~~~~~~~---~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.++...++....+|.. ......|+.++ |++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr-~g~k~~l~~~~~~~~i 105 (452)
T PRK11273 28 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAA 105 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCCchhHHHHHHHHHH
Confidence 34444444444544443 22344577777 9999999999999999999999999999999 7999999999999888
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.+++.+. +. ...+.+.+++.|++.|++.+...|.....+.|++|+++ |+++.++
T Consensus 106 ~~~~~~~~---~~----------------~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~ 160 (452)
T PRK11273 106 VMLFMGFV---PW----------------ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSV 160 (452)
T ss_pred HHHHHHhh---hc----------------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHH
Confidence 88877665 10 01236678888999999999988888888999999887 9999999
Q ss_pred HHHHHhHHHH-HHhhhhhhcccccchhHHHHHHHHHHHHHHHH
Q 035554 195 FYIALNLGCL-FSETVLVYAENMGYWVLGFWICAGCDILAFSS 236 (562)
Q Consensus 195 ~~~~~~lg~~-~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~ 236 (562)
++.+.++|+. .+|..+..+....+|++.|++.+++.++..++
T Consensus 161 ~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l 203 (452)
T PRK11273 161 WNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALF 203 (452)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 9999999875 45554333333458999999877665554443
No 24
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.90 E-value=1.1e-20 Score=196.18 Aligned_cols=367 Identities=13% Similarity=0.076 Sum_probs=223.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHH-HHHHHHHHHHHH
Q 035554 41 LVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVT-FQAFSIIGLLGL 119 (562)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~-~~~~~~~~~~~~ 119 (562)
++..++..++.....+.++.|+++++|.|..+.|++.+.+.+...+..++.|+++|| +||||.++. +.++..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDY-QGDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHHHHH
Confidence 455778888888999999999999999999999999999999999999999999999 799887664 455555566665
Q ss_pred HhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh--hHHHHHH
Q 035554 120 SFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS--FYSYFYI 197 (562)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~--~~~~~~~ 197 (562)
.++ + +++.+++.|++++.+.+...|...++..|..|+++ |.. ..++.+.
T Consensus 82 ~~~---~--------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~ 132 (375)
T TIGR00899 82 AWN---R--------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRA 132 (375)
T ss_pred Hhc---c--------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHH
Confidence 554 2 36677788888888777788888888888776544 443 3577788
Q ss_pred HHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCCCCCC
Q 035554 198 ALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGG 277 (562)
Q Consensus 198 ~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (562)
..++|..++|.+++++.+..+|++.|++.+++.++..++.+...|+.++++++++...+
T Consensus 133 ~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 191 (375)
T TIGR00899 133 QISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGALTRLE--------------------- 191 (375)
T ss_pred HHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccccCcch---------------------
Confidence 88999999999999999888999999998887665555444333322111110000000
Q ss_pred CccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCccccc
Q 035554 278 GLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSNFQI 357 (562)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (562)
. +......+.+.+-...... + ..........+.+..+..+.+..
T Consensus 192 -~-------------~~~~~~~~~~~~~~~~~~~--------------~--~~~~~~~~~~~~~~~~~~g~~~~------ 235 (375)
T TIGR00899 192 -V-------------RGLLASRDTRLLFVACTLM--------------W--GCNILYIINMPLLIIHELGLPDK------ 235 (375)
T ss_pred -h-------------hhhhcCcchHHHHHHHHHH--------------H--HHHHHHHhhhHHHHHHHcCCCHH------
Confidence 0 0000000111110000000 0 00000111234444332222211
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccc
Q 035554 358 PPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSL 437 (562)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (562)
..+.......+......++.+ .+.+|+++ | +.+..+.++..+++...... .
T Consensus 236 ~~g~~~~~~~~~~~~~~~~~g----~l~~r~g~-~-------~~~~~~~~~~~~~~~~~~~~-----------------~ 286 (375)
T TIGR00899 236 LAGLMMGTAAGLEIPFMLLAG----YLIKRFGK-R-------RLMLLAALAGVAFYTGLAAD-----------------N 286 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhHH----HHHHHhcc-h-------hHHHHHHHHHHHHHHHHHHH-----------------H
Confidence 111111111111122222222 33445433 1 12333433333333222221 2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCc
Q 035554 438 SIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLND 517 (562)
Q Consensus 438 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~ 517 (562)
+.+......++.+++.+...+..+.+..+..|++ +++++++++....+|..+++.+.+.+.+..
T Consensus 287 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~--------------- 350 (375)
T TIGR00899 287 SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERW--------------- 350 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------
Confidence 3444555667778888888888888888988875 579999999999999999999998765521
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 035554 518 GHLDRFFFLSATVTAMNLGVFVV 540 (562)
Q Consensus 518 ~~~~~~f~~~~~~~~~~~~~~~~ 540 (562)
+++..|++.+++.+++.+...+
T Consensus 351 -g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 351 -SYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred -cchhHHHHHHHHHHHHHHHHhe
Confidence 2355677777777666665543
No 25
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.90 E-value=1.9e-20 Score=197.04 Aligned_cols=342 Identities=13% Similarity=0.038 Sum_probs=212.9
Q ss_pred HHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhccccc
Q 035554 49 LAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLL 128 (562)
Q Consensus 49 ~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (562)
++...+.+.++. +.+++|.|..+.++..+.+.++..++.++.|+++|| +||||++.++.++..++.+++..+ +
T Consensus 27 ~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~---~-- 99 (406)
T PRK15402 27 IANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDR-IGRRPVMLAGVAFFILTCLAILLA---Q-- 99 (406)
T ss_pred hhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHH---c--
Confidence 344445555554 557899999999999999999999999999999999 799999999998888888877665 2
Q ss_pred CCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhh
Q 035554 129 RPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSET 208 (562)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~ 208 (562)
+.+.+++.|++.|++.+...+...+.+.|.+|+++ |.+..++.+....+|..++|.
T Consensus 100 ------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~ 155 (406)
T PRK15402 100 ------------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPL 155 (406)
T ss_pred ------------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHH
Confidence 36778899999999999888889999999998877 788888888888899999999
Q ss_pred hhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCCCCCCCccccchhhhh
Q 035554 209 VLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYE 288 (562)
Q Consensus 209 ~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (562)
+++++.+..+|++.|++.+++.+++.+..+...|+.+.+++++.+.++........
T Consensus 156 i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 211 (406)
T PRK15402 156 VGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSLKELGRDYKLV------------------------ 211 (406)
T ss_pred HHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccHHHHHHHHHHH------------------------
Confidence 99999888899999998777766655544333222111111100100000000000
Q ss_pred ccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCcccccCccccccchhH
Q 035554 289 ANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSNFQIPPASMTAFDIV 368 (562)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (562)
++++..+.-....... ...........+.+..+..+.+.. ..+.......+
T Consensus 212 --------~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~p~~~~~~~g~~~~------~~g~~~~~~~~ 262 (406)
T PRK15402 212 --------LKNRRFVAGALALGLV---------------SLPLLAWIALSPVILISGEQLSSY------EYGLLQVPVFG 262 (406)
T ss_pred --------HcCcHHHHHHHHHHHH---------------HHHHHHHHHHhHHHHHHHhCCCHH------HHHHHHHHHHH
Confidence 0000000000000000 000000011223333322221110 01111111111
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHH
Q 035554 369 STTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVL 448 (562)
Q Consensus 369 ~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 448 (562)
..++..++.+ .+.+|.+ ..+.+..+.++.+++.......... ...+.+++....++
T Consensus 263 ~~~~g~~~~g----~l~~r~~--------~~~~~~~~~~~~~~g~~~~~~~~~~------------~~~~~~~~~~~~~~ 318 (406)
T PRK15402 263 ALIAGNLTLA----RLTSRRP--------LRSLIRMGLWPMVAGLLLAALATVI------------SSHAYLWLTAGLSL 318 (406)
T ss_pred HHHHHHHHHH----HHHHhcC--------HHHHHHHHHHHHHHHHHHHHHHHHc------------ccccHHHHHHHHHH
Confidence 2222222222 2223332 3334566777666666666554211 11345666778899
Q ss_pred HHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 035554 449 LGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVM 499 (562)
Q Consensus 449 ~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~ 499 (562)
.+++++...+..+...... +++.+|++++++++.+.+|..+|+.+.+.+.
T Consensus 319 ~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~ 368 (406)
T PRK15402 319 YAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAY 368 (406)
T ss_pred HHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999888877766544 4589999999999999999999988877553
No 26
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.90 E-value=2.8e-21 Score=207.09 Aligned_cols=179 Identities=11% Similarity=-0.039 Sum_probs=137.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEV---NMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~---~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
|..+.++...++.....|.... .....+.+++|++..+.|++.+.+.+++.++++++|+++|| +||||++.++.++
T Consensus 25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~ 103 (467)
T PRK09556 25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADG-KNTKQFLPFLLIL 103 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhc-cCccchHHHHHHH
Confidence 4455455555554444444322 22455778999999999999999999999999999999999 7999999998888
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
..++.++.+.... . ...+.+.+++.|++.|++.+...|...+++.|++|+++ |+++
T Consensus 104 ~~~~~~~~~~~~~-~-----------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a 159 (467)
T PRK09556 104 SAICMLGFGASLG-S-----------------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRF 159 (467)
T ss_pred HHHHHHHHHHHHh-c-----------------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeee
Confidence 7777666554310 0 01248889999999999999999999999999999988 9999
Q ss_pred HHHHHHHHhHHHHHHhhhhhhccccc---chhHHHHHHHHHHHHHHHHHH
Q 035554 192 YSYFYIALNLGCLFSETVLVYAENMG---YWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~~~~---~~~~~f~i~~~~~~~~~~~~~ 238 (562)
++++..+.++|.++++.+..++.+.. +|+..|.+.++..++..++.+
T Consensus 160 ~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~ 209 (467)
T PRK09556 160 LGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGL 209 (467)
T ss_pred EEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999998887665532 588888876665554434333
No 27
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.90 E-value=1.3e-20 Score=197.32 Aligned_cols=368 Identities=11% Similarity=0.001 Sum_probs=228.9
Q ss_pred HHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhccc
Q 035554 47 ANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSF 126 (562)
Q Consensus 47 ~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~ 126 (562)
.+-.++.+.+.+|. +++++|+|..+.+++.+.+.++..+++++.|+++|| +|||+++..+..+.+++.++++++ |
T Consensus 21 ~~~~~~~~~~~lp~-i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr-~G~r~~l~~~~~l~~~~~~~~~~a---~ 95 (393)
T PRK09705 21 MRPLLTSVGPLLPQ-LRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQH-VSERRSVAISLLLIAVGALMRELY---P 95 (393)
T ss_pred cchhhhccchhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCchHHHHHHHHHHHHHHHHHHHC---c
Confidence 33344556665655 677899999999999999999999999999999999 799999999999999999999887 3
Q ss_pred ccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHH
Q 035554 127 LLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFS 206 (562)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~ 206 (562)
+++.++++|+++|++.+...+....++.+++| ++ |+++.+++..+.++|..++
T Consensus 96 --------------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g 148 (393)
T PRK09705 96 --------------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLG 148 (393)
T ss_pred --------------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHH
Confidence 36778999999999999999999999999886 66 8899999999999999999
Q ss_pred hhhhhhccccc-chhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCCCCCCCccccchh
Q 035554 207 ETVLVYAENMG-YWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVR 285 (562)
Q Consensus 207 ~~~~~~l~~~~-~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (562)
+.+++++.+.. +|+..+.+.++..++....++...++. |++++. .+ + . .
T Consensus 149 ~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~------------~~----~---~-~------ 198 (393)
T PRK09705 149 AAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSARE----VASSHK------------TT----T---T-P------ 198 (393)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCC----CccccC------------CC----c---C-C------
Confidence 99999887764 899887665544443333333222211 110000 00 0 0 0
Q ss_pred hhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCcccccCccccccc
Q 035554 286 EYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSNFQIPPASMTAF 365 (562)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (562)
.+. ..+...+.-...... . .........+.+.++.+ .+.+.. ..+.....
T Consensus 199 -------~~~-l~~~~~~~l~~~~~~-~--------------~~~~~~~~~~lp~~l~~-~g~s~~------~ag~~~~~ 248 (393)
T PRK09705 199 -------VRV-VFTPRAWTLGVYFGL-I--------------NGGYASLIAWLPAFYIE-IGASAQ------YSGSLLAL 248 (393)
T ss_pred -------ccc-ccCHhHHHHHHHHHH-H--------------HHHHHHHHHHHHHHHHH-cCCChh------hhhHHHHH
Confidence 000 000001100000000 0 00001111234445443 222211 12222223
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHH
Q 035554 366 DIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQ 445 (562)
Q Consensus 366 ~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (562)
..+..++...+.+ .+.+|.++ .+.+..+..+.+++.....+.. .+... ..
T Consensus 249 ~~i~~i~g~~~~g----~l~~r~~~--------~~~~~~~~~l~~~~~~~~~~~~----------------~~~~~--~~ 298 (393)
T PRK09705 249 MTLGQAAGALLMP----AMARHQDR--------RKLLMLALVLQLVGFCGFIWLP----------------LQLPV--LW 298 (393)
T ss_pred HHHHHHHHHHHHH----HHHhhccc--------hHHHHHHHHHHHHHHHHHHHcc----------------chHHH--HH
Confidence 3333333333333 23333322 2234555555555554433321 11111 12
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHH
Q 035554 446 YVLLGVSEAFVYVAQMEFFASQIP-NGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFF 524 (562)
Q Consensus 446 ~~l~g~g~~~~~~~~~~~~~~~~P-~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f 524 (562)
.++.+++.+...|.......+..| ++.+|+.+|+.+....++..+++.+.+.+.+.+ +++...|
T Consensus 299 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~---------------g~~~~~~ 363 (393)
T PRK09705 299 AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS---------------GNYLMDW 363 (393)
T ss_pred HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------CCchHHH
Confidence 345677777777877777777774 678999999999999999999999999776632 1234566
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccchh
Q 035554 525 FLSATVTAMNLGVFVVCARRYKSISLQ 551 (562)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (562)
.+.++.+++.....+.+.+++..|.+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK09705 364 AFHALCVVGLMIITLRFAPARFPQLWV 390 (393)
T ss_pred HHHHHHHHHHHHHHHHhccccccchhc
Confidence 676777777666667777765555443
No 28
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.90 E-value=1.6e-21 Score=208.41 Aligned_cols=144 Identities=16% Similarity=0.238 Sum_probs=123.6
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchH
Q 035554 69 TNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAET 148 (562)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (562)
+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++.+++.+... ....
T Consensus 69 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~ 127 (481)
T TIGR00879 69 SSSLWGLVVSIFLVGGFIGALFAGWLSDR-FGRKKSLLIIALLFVIGAILMGLAAF--------------------ALSV 127 (481)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhhHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhcc--------------------ccch
Confidence 38999999999999999999999999999 79999999999999988888765421 1235
Q ss_pred HHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhh---hhcccccchhHHHHH
Q 035554 149 AIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVL---VYAENMGYWVLGFWI 225 (562)
Q Consensus 149 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~---~~l~~~~~~~~~f~i 225 (562)
+.++++|+++|++.+...+...+++.|++|+++ |+++.++++...++|..+++.++ +...+..+|++.|++
T Consensus 128 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~ 201 (481)
T TIGR00879 128 EMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGL 201 (481)
T ss_pred HHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHH
Confidence 678999999999999999999999999999888 99999999999999999999998 777677899999999
Q ss_pred HHHHHHHHHHHHHh
Q 035554 226 CAGCDILAFSSLLS 239 (562)
Q Consensus 226 ~~~~~~~~~~~~~~ 239 (562)
.++..++..+..++
T Consensus 202 ~~~~~~~~~~~~~~ 215 (481)
T TIGR00879 202 QLIPAGLLFLGLFF 215 (481)
T ss_pred HHHHHHHHHHHHhc
Confidence 76655555444433
No 29
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.89 E-value=1.9e-20 Score=207.16 Aligned_cols=155 Identities=15% Similarity=0.137 Sum_probs=130.5
Q ss_pred HHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCC
Q 035554 55 EVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCG 134 (562)
Q Consensus 55 ~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (562)
...+..++.+++|++..+.+++.+++.++..++.+++|+++|| +|||+++++++++..++.++++++ +
T Consensus 186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR-~GRR~~lii~lil~~i~~ll~afa---~-------- 253 (742)
T TIGR01299 186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADK-LGRKQCLLICLSVNGFFAFFSSFV---Q-------- 253 (742)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHH---h--------
Confidence 4445566777899999999999999999999999999999999 799999999999988888888776 2
Q ss_pred CCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcc
Q 035554 135 KIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAE 214 (562)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~ 214 (562)
+++.++++|++.|++.|+..|...+++.|.+|.+. |+..+++...+..+|.++++.++..+.
T Consensus 254 ------------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il 315 (742)
T TIGR01299 254 ------------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAII 315 (742)
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37789999999999999999999999999999877 899999999999999999987765543
Q ss_pred c-------------ccchhHHHHHHHHHHHHHHHHHHh
Q 035554 215 N-------------MGYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 215 ~-------------~~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
. ..+||+.|++.++..++++++.++
T Consensus 316 ~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~ 353 (742)
T TIGR01299 316 PHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF 353 (742)
T ss_pred HhccchhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 2 236899888877766655554433
No 30
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.89 E-value=8.3e-21 Score=204.14 Aligned_cols=434 Identities=13% Similarity=0.078 Sum_probs=238.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh--------CCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVL--------RQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCV 106 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~l--------g~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~ 106 (562)
+..+...+..+...+....+.+..+. +++.+ +.+..+.+++.+++.++..+++++.|+++|| +||||+++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr-~Grr~~~~ 89 (479)
T PRK10077 12 SITLVATLGGLLFGYDTAVISGTVES-LNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLK 89 (479)
T ss_pred HHHHHHHHHHHhcCcccceehHhHHH-HHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHH
Confidence 44444444444444444434333333 44444 8899999999999999999999999999999 79999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhh
Q 035554 107 TFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKK 186 (562)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 186 (562)
++.+++.++.++++++...-. + -..++......++++|+++|++.|...|...++++|++|+++
T Consensus 90 ~~~~l~~i~~~~~~~~~~~~~--~---------~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~----- 153 (479)
T PRK10077 90 IAAVLFFISALGSAWPEFGFT--S---------IGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI----- 153 (479)
T ss_pred HHHHHHHHHHHHHHhhccccc--c---------ccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh-----
Confidence 999998888877765310000 0 000111235678899999999999999999999999999888
Q ss_pred hhhhhHHHHHHHHhHHHHHHhhhhhhcc--------cccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHH
Q 035554 187 SKTSFYSYFYIALNLGCLFSETVLVYAE--------NMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFS 258 (562)
Q Consensus 187 ~r~~~~~~~~~~~~lg~~~~~~~~~~l~--------~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (562)
|+++++++..+..+|.++++.++..+. +..+||+.|++.++..++..+..++. ++.++....++..++..
T Consensus 154 -rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l-~~s~~~l~~~~~~~~~~ 231 (479)
T PRK10077 154 -RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFV-PETPRYLMSRGKQEQAE 231 (479)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcC-CCCcHHHHHcCCHHHHH
Confidence 999999999999999999887665432 34689999998877666554443333 22111000011111111
Q ss_pred HHHHHHHhhhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhh--
Q 035554 259 QVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEE-- 336 (562)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 336 (562)
+.. ++ ........ ...++....... +.........+....... ........+
T Consensus 232 ~~~----~~--~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~ 285 (479)
T PRK10077 232 GIL----RK--IMGNTLAT--QALQEIKHSLDH-GRKTGGKLLMFGVGVIVI-----------------GVMLSVFQQFV 285 (479)
T ss_pred HHH----HH--HcCChhHH--HHHHHHHHHHHH-hhhhhhhhcchhHHHHHH-----------------HHHHHHHHHHh
Confidence 000 00 00000000 000000000000 000000000000000000 000000000
Q ss_pred -------hhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHH
Q 035554 337 -------MLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIA 409 (562)
Q Consensus 337 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~ 409 (562)
+.+.+..+ .+.+.. ..........+..++..++.. .+.+|+++ ...+..+.+++
T Consensus 286 ~~~~~~~~~p~i~~~-~g~~~~------~~~~~~~~~~~~~~i~~~~~g----~l~dr~g~--------r~~~i~~~~~~ 346 (479)
T PRK10077 286 GINVVLYYAPEIFKT-LGASTD------IALLQTIIVGVINLTFTVLAI----MTVDKFGR--------KPLQIIGALGM 346 (479)
T ss_pred ChhHHHHHHHHHHHH-cCCCCc------hHHHHHHHHHHHHHHHHHHHH----HHHHHhcC--------hHHHHHhHHHH
Confidence 01111111 111100 011111111222222222222 23345443 22456677777
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHh-hhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Q 035554 410 TVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAF-VYVAQMEFFASQIPNGLKSLGIALSMSSTAIGT 488 (562)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~-~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~ 488 (562)
+++++........ ....++.....++++.+.+. ..|..+.++.|..|++.||+++|+.+....+|+
T Consensus 347 ~v~~~~l~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~ 413 (479)
T PRK10077 347 AIGMFSLGTAFYT-------------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIAN 413 (479)
T ss_pred HHHHHHHHHHHhc-------------CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHH
Confidence 7776666543110 11222334455555555554 347778999999999999999999999999999
Q ss_pred HHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhc
Q 035554 489 YVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARRYKSISLQKQEGE 556 (562)
Q Consensus 489 ~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (562)
.+++.+.+.... ++|+.+. .+....|++.+++++++.+..+++.++.++++.|+.+++
T Consensus 414 ~~~~~~~p~~~~-------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 471 (479)
T PRK10077 414 YFVSWTFPMMDK-------NSWLVAH---FHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEAL 471 (479)
T ss_pred HHHHHHhHHHHh-------ccchhhh---ccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHH
Confidence 999877764431 1232111 122345677777777777777777788888877766554
No 31
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.89 E-value=2e-20 Score=193.73 Aligned_cols=156 Identities=13% Similarity=-0.003 Sum_probs=122.1
Q ss_pred HhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 035554 52 AGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPH 131 (562)
Q Consensus 52 ~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (562)
+...+.+ ..+++++|+|+.+.|++.+.+.+++.+++++.|+++|| +|||+++..+.+....+.. .... .
T Consensus 8 ~~~~~~l-p~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~-~~~~---~----- 76 (368)
T TIGR00903 8 VTFSPVL-SLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDR-AFKRWFLFGSLATFAAAAG-RLLD---P----- 76 (368)
T ss_pred HHHHhhH-HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHH-HHHH---h-----
Confidence 3333444 44577899999999999999999999999999999999 7999887655544444332 2221 0
Q ss_pred CCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhh
Q 035554 132 GCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLV 211 (562)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~ 211 (562)
.++..++++|+++|+|.+.. ++......|++|+++ |+++.++.+.+.++|..+++.+++
T Consensus 77 --------------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~~ 135 (368)
T TIGR00903 77 --------------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAGL 135 (368)
T ss_pred --------------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 14788999999999999864 555566689999877 999999999999999999999999
Q ss_pred hcccccchhHHHHHHHHHHHHHHHHHHh
Q 035554 212 YAENMGYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 212 ~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
++.+..|||..|++.+++.++..++++.
T Consensus 136 ~l~~~~gWr~~f~~~~~l~~~~~~~~~~ 163 (368)
T TIGR00903 136 KIYTAGGLQLLIIPIAAVAAAGIILVLA 163 (368)
T ss_pred HHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 9998899999999866665554444433
No 32
>PRK03699 putative transporter; Provisional
Probab=99.89 E-value=2.6e-20 Score=195.23 Aligned_cols=174 Identities=13% Similarity=0.130 Sum_probs=145.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 32 GGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
.|+|..+...+..++.....+.....+|. +.+++|+|..+.+++.+.+.++..++.+++|+++|| +||||++..+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~g~r~~~~~~~~~ 81 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEI-IPLKRQLIFGFAL 81 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHH
Confidence 45577777777777777776666666666 567899999999999999999999999999999999 7999999999998
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
..++.+++.++ + +.+.++++|+++|++.+...+...+++.|.+|+++ |+..
T Consensus 82 ~~i~~~l~~~~---~--------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~ 132 (394)
T PRK03699 82 MILAVAGLMFS---H--------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSR 132 (394)
T ss_pred HHHHHHHHHHc---c--------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHH
Confidence 88888887765 2 37778899999999999888889999999998877 8899
Q ss_pred HHHHHHHHhHHHHHHhhhhhhcc-cccchhHHHHHHHHHHHHHHHH
Q 035554 192 YSYFYIALNLGCLFSETVLVYAE-NMGYWVLGFWICAGCDILAFSS 236 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~-~~~~~~~~f~i~~~~~~~~~~~ 236 (562)
.+..+...++|+.++|.+.+++. +..+||+.|.+.++..++..++
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 133 LLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 88888888999999998888765 4579999998877665544443
No 33
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.89 E-value=4.3e-20 Score=193.51 Aligned_cols=174 Identities=12% Similarity=0.053 Sum_probs=150.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 035554 31 TGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQA 110 (562)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~ 110 (562)
|+.|+....+.+..++.....|.....+|. +.+++|+++.+.++..+.+.++..++.++.|+++|| +||||++..+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~grr~~~~~~~~ 93 (394)
T PRK10213 16 RPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQA-TDRRYVVILFAV 93 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHHHHH
Confidence 456777777777766666677776666666 456899999999999999999999999999999999 799999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
+.+++.+++.++ + +++.+++.|+++|++.+...|...+++.|++|+++ |++
T Consensus 94 ~~~~~~~~~~~~---~--------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~ 144 (394)
T PRK10213 94 LLTLSCLLVSFA---N--------------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPK 144 (394)
T ss_pred HHHHHHHHHHHH---C--------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHH
Confidence 999988887765 2 48889999999999999999999999999999888 999
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHH
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFS 235 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~ 235 (562)
+.++.....++|..++|.+++++.+..+|++.|++.+++.++..+
T Consensus 145 a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l 189 (394)
T PRK10213 145 ALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIF 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999989999999987765554433
No 34
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.89 E-value=3.3e-20 Score=194.28 Aligned_cols=168 Identities=12% Similarity=0.021 Sum_probs=140.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.++.+++..++..++...+...++.. .+++|.+..+.+++.+.+.+...++.+++|+++|| +||||+++.+.++..+
T Consensus 3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr-~grr~vl~~~~~~~~~ 80 (393)
T PRK11195 3 KGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADS-FPKGRVMFIANGIKLL 80 (393)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhc-cCCchhhHHHHHHHHH
Confidence 466778888888888766665555554 56889999999999999999999999999999999 7999999999999988
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.+++.++ + + .++.|+++|++.+...|+..+++.|++|+++ |+++.++
T Consensus 81 ~~~~~~~~---~--------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~ 128 (393)
T PRK11195 81 GCLLMLFG---I--------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGW 128 (393)
T ss_pred HHHHHHHH---H--------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHH
Confidence 88776554 1 1 2678999999999999999999999999887 9999999
Q ss_pred HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHH
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSL 237 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~ 237 (562)
.+...++|..+||.++|++.+. .|+..+.+...+.+++.+..
T Consensus 129 ~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~~~~ 170 (393)
T PRK11195 129 MEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAALFN 170 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999874 47777776666554444433
No 35
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.89 E-value=3.2e-20 Score=189.89 Aligned_cols=348 Identities=20% Similarity=0.215 Sum_probs=250.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHH
Q 035554 38 TLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLL 117 (562)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~ 117 (562)
+.+....++..+..+...+..+.|.+ ++|.+..+.+++.+...++..++.++.|+++|| +||||.+.++.++..++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~g~r~~~~~~~~~~~~~~~ 79 (352)
T cd06174 2 LLLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR-FGRRRVLLLGLLLFALGSL 79 (352)
T ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCchhhHHHHHHHHHHHH
Confidence 44566777888888888888888775 579999999999999999999999999999999 7999999999999999988
Q ss_pred HHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHH
Q 035554 118 GLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYI 197 (562)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 197 (562)
++... + +.+.++++|++.|++.+...+...++..|.+|+++ |++.+++.+.
T Consensus 80 ~~~~~---~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 130 (352)
T cd06174 80 LLAFA---S--------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSA 130 (352)
T ss_pred HHHHh---c--------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHH
Confidence 87765 2 37789999999999999999999999999999888 9999999999
Q ss_pred HHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCCCCCC
Q 035554 198 ALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGG 277 (562)
Q Consensus 198 ~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (562)
..++|..++|.+++.+.+..+|+..|++..+..++..+...... +..........
T Consensus 131 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~------------ 185 (352)
T cd06174 131 GFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-------------RLLLLLALAFF------------ 185 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH------------
Confidence 99999999999999999888999999988877666655543322 00000000000
Q ss_pred CccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCccccc
Q 035554 278 GLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSNFQI 357 (562)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (562)
... ..........+.+..+..+.+ ..
T Consensus 186 --------------------------~~~----------------------~~~~~~~~~~~~~~~~~~~~~------~~ 211 (352)
T cd06174 186 --------------------------LLS----------------------FGYYGLLTYLPLYLQEVLGLS------AA 211 (352)
T ss_pred --------------------------HHH----------------------hHHHHHHHHHHHHHHHhcCCC------HH
Confidence 000 000000112333333211111 11
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccc
Q 035554 358 PPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSL 437 (562)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (562)
..+.......+...+..++.. ++.+|.++|+ . .+..+.++..++....... .
T Consensus 212 ~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~-----~--~~~~~~~~~~i~~~~~~~~-----------------~ 263 (352)
T cd06174 212 EAGLLLSLFGLGGILGALLGG----LLSDRLGRRR-----L--LLLIGLLLAALGLLLLALA-----------------P 263 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhh-----H--HHHHHHHHHHHHHHHHHHh-----------------c
Confidence 122333333344444444444 3344554311 0 4566777777776666553 2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCc
Q 035554 438 SIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLND 517 (562)
Q Consensus 438 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~ 517 (562)
+.+......++.+++.+...+...++..+..|++.|++.+|+.+....+|..+++.+.+.+.+.
T Consensus 264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~---------------- 327 (352)
T cd06174 264 SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT---------------- 327 (352)
T ss_pred cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------
Confidence 3566778899999999999999999999999999999999999999999999999998876541
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 035554 518 GHLDRFFFLSATVTAMNLGVFV 539 (562)
Q Consensus 518 ~~~~~~f~~~~~~~~~~~~~~~ 539 (562)
.++...|.+.+++.+++.+..+
T Consensus 328 ~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 328 GGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred cCcchHHHHHHHHHHHHHHHhe
Confidence 1234567777777776665544
No 36
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.89 E-value=1.9e-20 Score=196.15 Aligned_cols=174 Identities=18% Similarity=0.205 Sum_probs=150.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 035554 31 TGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQA 110 (562)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~ 110 (562)
+.+|+.+....+..++..+..+.+....+ .+++++|++..+.+++.+.+.++..++.++.|+++|| +|||+++..+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~ 85 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDR-YGRRLPMVTSIV 85 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHH
Confidence 45667788888888888888877776665 4677899999999999999999999999999999999 799999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
+..++.+++.++ + +++.++++|++.|++.+...+...+++.|++|+++ |++
T Consensus 86 ~~~~~~~~~~~~---~--------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~ 136 (405)
T TIGR00891 86 LFSAGTLACGFA---P--------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNK 136 (405)
T ss_pred HHHHHHHHHHHh---c--------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhH
Confidence 988888887765 2 37778999999999999999999999999999888 999
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccccc--hhHHHHHHHHHHHHHHH
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENMGY--WVLGFWICAGCDILAFS 235 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~--~~~~f~i~~~~~~~~~~ 235 (562)
+.++.+...++|..+++.+++.+.+..+ |++.|++.++..++..+
T Consensus 137 ~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~ 183 (405)
T TIGR00891 137 ASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALW 183 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988877655 99999886665554433
No 37
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.89 E-value=1.3e-20 Score=202.83 Aligned_cols=378 Identities=13% Similarity=0.089 Sum_probs=234.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIG 115 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~ 115 (562)
....+.+..++..+....+...+| ++.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~ 80 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIP-TIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKR-FGTRRLFLISTFAFTLG 80 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHH-hCcHHHHHHHHHHHHHH
Confidence 344455555555555555555444 4566799999999999999999999999999999999 79999999999999999
Q ss_pred HHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHH
Q 035554 116 LLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYF 195 (562)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 195 (562)
.+++..+ + +.+.++++|+++|++.+...|...+++.|.+|+++ |+++.+++
T Consensus 81 ~~~~~~~---~--------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~ 131 (485)
T TIGR00711 81 SLLCGVA---P--------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIW 131 (485)
T ss_pred HHHHhCc---C--------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHH
Confidence 9888765 2 37789999999999999999999999999999877 89999999
Q ss_pred HHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHH----HHhhhccc
Q 035554 196 YIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVA----SLRKINLE 271 (562)
Q Consensus 196 ~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 271 (562)
+...++|..++|.+++++.+..+|++.|++..+..++..++.....++.+. .+.++.+.....+.. ........
T Consensus 132 ~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~l~~~~~~~~~~~~~~ 209 (485)
T TIGR00711 132 GLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP--AASENFDFLGLLLLSVGLGSLLYGLSE 209 (485)
T ss_pred HHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc--cccCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998999999998877665555444333332111 111112211111100 00000000
Q ss_pred CCCCCCCccccchhh-----------------hhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehh---
Q 035554 272 MPTNGGGLFEVHVRE-----------------YEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTV--- 331 (562)
Q Consensus 272 ~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--- 331 (562)
.+. ..+.++.. .+....++. .+ .+.+ ..+..+.....
T Consensus 210 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~----------------~~~~~~~~~~~~~~ 266 (485)
T TIGR00711 210 GPE----RGWFDSNEILILSITGLVAIIAFVVWELTDDNPL--VD-LRLF----------------KYRNFTIGCVYMSL 266 (485)
T ss_pred CCC----CCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCc--cC-HHHH----------------cCCChHHHHHHHHH
Confidence 000 00000000 000000000 00 0000 00000000000
Q ss_pred -----hhhhhhhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHH
Q 035554 332 -----TQVEEMLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGL 406 (562)
Q Consensus 332 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ 406 (562)
.......+.|..+..+.+ ....+.......+..++..++..+ +.+|.+ +.+.+..|.
T Consensus 267 ~~~~~~~~~~~~p~~~~~~~g~s------~~~~g~~~~~~~~~~~~~~~~~g~----l~~r~~--------~~~~~~~g~ 328 (485)
T TIGR00711 267 LGLGLYGSFYLLPLYLQQVLGYT------ALQAGLHILPVGLAPMLSSPIAGR----MGDKID--------PRKLVTIGL 328 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHH----HHhhcC--------cHHHHHHHH
Confidence 000112344444322211 111222222333333344444432 223332 233456677
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHH
Q 035554 407 AIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAI 486 (562)
Q Consensus 407 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~l 486 (562)
++.+++.....+.. ..+.+.+......++.|++.+...++......+..|++++|+++|++++.+.+
T Consensus 329 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 395 (485)
T TIGR00711 329 ILYAVGFYWRAFTF-------------TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQL 395 (485)
T ss_pred HHHHHHHHHHhccC-------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHH
Confidence 76666666554210 11244555666788999999999888888888999999999999999999999
Q ss_pred HHHHHHHHHHHhHh
Q 035554 487 GTYVCSMILSVVMV 500 (562)
Q Consensus 487 g~~lg~~l~~~i~~ 500 (562)
|+.+|+.+.+.+.+
T Consensus 396 g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 396 GGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887654
No 38
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.89 E-value=1.1e-20 Score=201.56 Aligned_cols=150 Identities=13% Similarity=0.091 Sum_probs=125.0
Q ss_pred HHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCc
Q 035554 60 LFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQL 139 (562)
Q Consensus 60 ~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (562)
..+.+++|++..+.+++.+.+.++..++.++.|+++|| +|||++++.+.++..++.+++.++.
T Consensus 43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~---------------- 105 (455)
T TIGR00892 43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNR-FGCRPVVIAGGLLASLGMILASFSS---------------- 105 (455)
T ss_pred HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH-cCchHHHHhhHHHHHHHHHHHHHhh----------------
Confidence 34567899999999999999999999999999999999 7999999999988888888877652
Q ss_pred CCCCCCchHHHHHH-HHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccc
Q 035554 140 CDPHSPAETAIFYI-SIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGY 218 (562)
Q Consensus 140 ~~~~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~ 218 (562)
+.+.+++ .|++.|++.+...+...+++.++++ ++ |+++.++.+.+.++|..++|.+++++.+.+|
T Consensus 106 -------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g 171 (455)
T TIGR00892 106 -------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFESFG 171 (455)
T ss_pred -------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Confidence 2445554 5688899998776677778888885 55 8999999999999999999999999988889
Q ss_pred hhHHHHHHHHHHHHHHHHHHhc
Q 035554 219 WVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 219 ~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
|++.|++.+++.+++.+..++.
T Consensus 172 wr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 172 WRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888766555544433
No 39
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.89 E-value=3.6e-21 Score=197.54 Aligned_cols=167 Identities=21% Similarity=0.271 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHH
Q 035554 41 LVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLS 120 (562)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~ 120 (562)
++..++..+......+.++.++.+++|.+..+.+++.+.+.++..++.++.|+++|| +||||++.++.++.+++.+...
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDR-FGRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeEeehhhhhhhHHHHhh
Confidence 456677777777788888878899999999999999999999999999999999999 7999999999999998855555
Q ss_pred hhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHh
Q 035554 121 FATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALN 200 (562)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 200 (562)
++ + +.+.++++|++.|++.+...+...+++.|.+|+++ |++.+++.+...+
T Consensus 81 ~~---~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~ 131 (352)
T PF07690_consen 81 FA---S--------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFS 131 (352)
T ss_dssp HH---C--------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHH
T ss_pred hh---h--------------------hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhh
Confidence 54 2 25589999999999999999999999999999988 9999999999999
Q ss_pred HHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHH
Q 035554 201 LGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSL 237 (562)
Q Consensus 201 lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~ 237 (562)
+|..++|.+++++.+..+|++.|++.++..++..++.
T Consensus 132 ~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~ 168 (352)
T PF07690_consen 132 LGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILF 168 (352)
T ss_dssp HHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHH
T ss_pred hhhhcccchhhhhhhccccccccccccchhhhhhhhH
Confidence 9999999999999988899999999998887776643
No 40
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.89 E-value=1.4e-20 Score=201.67 Aligned_cols=379 Identities=10% Similarity=0.020 Sum_probs=222.9
Q ss_pred hhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCC
Q 035554 65 VLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHS 144 (562)
Q Consensus 65 ~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (562)
+++++..+.|.+.+.+.+++.++.+++|+++|| +|||+++..+.++..++.+++.++..
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~-------------------- 128 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGK-YVFKWSIGIGMFLSSVISIVIPWAAG-------------------- 128 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHH-hCcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence 689999999999999999999999999999999 79999999999988888777654411
Q ss_pred CchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccc-cchhHHH
Q 035554 145 PAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENM-GYWVLGF 223 (562)
Q Consensus 145 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~-~~~~~~f 223 (562)
.+.+.+++.|+++|++.+...|....++.|++|+++ |+++.++.+.+.++|..++|.+++++.+. .+|+..|
T Consensus 129 -~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f 201 (465)
T TIGR00894 129 -GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIF 201 (465)
T ss_pred -cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeh
Confidence 125678899999999999999999999999999888 99999999999999999999999999887 4999999
Q ss_pred HHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCCCCCCCccccchhhhhccCcccccccCchhH
Q 035554 224 WICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKF 303 (562)
Q Consensus 224 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (562)
++.++..++..++++...++.+.+++..++.. .+......+. ...+ .....++++..+.
T Consensus 202 ~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~i~~~~~~--~~~~-----------------~~~~~~~~~~~~~ 260 (465)
T TIGR00894 202 YVFGIVGCAWSLLWFVFPADDPSIHPCISKFE--KKYINSSLQG--QKGS-----------------TRQSLPIKAIPKS 260 (465)
T ss_pred hhhhHHHHHHHHHHHHHhcCCcccCCCCCHHH--HHHHHhhccc--ccCC-----------------CCCCCCHHHHhcC
Confidence 99887766655554443332222111111100 0000000000 0000 0000011110000
Q ss_pred HHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHH
Q 035554 304 LDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVP 383 (562)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 383 (562)
..........- ...........+.|.|+.+..+.+.. ..+.......+...+...+.+++.+.
T Consensus 261 ~~~~~~~~~~~-----------~~~~~~~~~~~~lp~~l~~~~g~s~~------~~g~~~~~~~~~~~i~~~~~g~l~d~ 323 (465)
T TIGR00894 261 LPVWAIWFAIF-----------GHFWLYTILPTYLPTFISWVLRVSGK------ENGLLSSLPYLFAWLCSIFAGYLADF 323 (465)
T ss_pred HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhCcChH------HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000000 00000011122556666654443321 23334444455555555666655443
Q ss_pred hhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHH
Q 035554 384 LYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEF 463 (562)
Q Consensus 384 ~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~ 463 (562)
+.+|... +.....++..+..+...+...+.... ...+.+..+..+.+.+.+.+...+..+..
T Consensus 324 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 385 (465)
T TIGR00894 324 LKSSKTL----SLTAARKIFNGIGGLGPGIFAYALPY--------------LSAAFYLTIIILTLANAVSSGPLAGVLIN 385 (465)
T ss_pred HHHcCCC----cHHHHHHHHHHHHHHHHHHHHHHHHH--------------cCCchHHHHHHHHHHHHHhhhhhhhhhhc
Confidence 3322111 00111122222222211211111110 01222333444555555555555666666
Q ss_pred HHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 035554 464 FASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVC 541 (562)
Q Consensus 464 ~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~ 541 (562)
..+.+|+ .+|..+|+.++...+|+.+++.+.+.+.+. -..+.+...|.+.+++.+++.+++...
T Consensus 386 ~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~-------------~~~~~~~~~f~~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 386 SLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQ-------------DSKNVWLIVFLIMAFVNILCVIFYLIF 449 (465)
T ss_pred hhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCC-------------CCchHHHHHHHHHHHHHHHHHHHeeee
Confidence 6677776 899999999999999999999887754321 011345677888888888777666544
No 41
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.89 E-value=8.2e-20 Score=190.58 Aligned_cols=158 Identities=13% Similarity=0.086 Sum_probs=139.3
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
.|.++.++...++..++...+.+.+|.|.+ ++|.|..++|++.+.+.++..+++++.|+++|| +||||++..+.++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr-~g~k~~~~~~~~~~~ 82 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKR-IGFNRSYYLASLIFA 82 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHH
Confidence 467899999999999999999999999887 579999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.+.+.++ + +.+.++++|++.|++.+...|...+.+.+..++++ |++.++
T Consensus 83 ~~~~~~~~~---~--------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 133 (381)
T PRK03633 83 AGCAGLGLM---V--------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLA 133 (381)
T ss_pred HHHHHHHHh---c--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHH
Confidence 888877765 2 37789999999999999988888888888887766 889999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHH
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLG 222 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~ 222 (562)
+++...++|..++|.+++.+.+...++..
T Consensus 134 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~ 162 (381)
T PRK03633 134 AYMMVYYLGTVLGQLLVSKVSTELMSVLP 162 (381)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccchHH
Confidence 99999999999999999998775433333
No 42
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.88 E-value=6e-20 Score=197.06 Aligned_cols=176 Identities=11% Similarity=0.043 Sum_probs=134.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 32 GGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
++++.+.......++..+..+...+.++ ++.+++|++..+.+++.+.+.++..++.+++|+++|| +|||+++..+.++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~ 110 (476)
T PLN00028 33 PHMRAFHLSWISFFTCFVSTFAAAPLLP-IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDL-YGPRYGSAFLLML 110 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHH
Confidence 3445555555556666666666655444 5677899999999999999999999999999999999 7999999999988
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
..++.++++++ + +.+.++++|++.|++.+... ....++.|++|+++ |+++
T Consensus 111 ~~~~~~~~~~~---~--------------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~------rg~a 160 (476)
T PLN00028 111 TAPAVFCMSLV---S--------------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI------VGTA 160 (476)
T ss_pred HHHHHHHHHHh---c--------------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh------eeHH
Confidence 88888777765 2 36678889999999988654 44567899999888 9999
Q ss_pred HHHHHHHHhHHHHHHhhhhhhccc---------ccchhHHHHHHHHHHHHHHHHHHh
Q 035554 192 YSYFYIALNLGCLFSETVLVYAEN---------MGYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~~---------~~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
.++.+...++|+.+++.+.+.+.. ..|||+.|++.+++.++..++.++
T Consensus 161 ~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 161 NGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999888888888877666654421 248999999888766655444433
No 43
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.88 E-value=2.9e-19 Score=187.87 Aligned_cols=170 Identities=11% Similarity=0.038 Sum_probs=139.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 32 GGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
+.||.+....++.++..++.+....+++.|+ +++|+|..+.+++.+.+.++..++.++.|+++|| +||||++..+.++
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr-~g~k~~l~~~~~~ 87 (402)
T TIGR00897 10 GIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEI-IGPLKTMMIGLLL 87 (402)
T ss_pred CCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHH
Confidence 4568888888898888888888888888888 4689999999999999999999999999999999 7999999999998
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
..++.+++..... . ..+.+.+++.|++.|++.+...+...+.+.+.+|+++ |+++
T Consensus 88 ~~~~~~~~~~~~~-~------------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~ 142 (402)
T TIGR00897 88 WCVGHAAFIVFGL-G------------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSA 142 (402)
T ss_pred HHHHHHHHHHHhc-c------------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHH
Confidence 8888765532210 0 0136677889999999988877777888889888877 9999
Q ss_pred HHHHHHHHhHHH-HHHhhhhhhcccccchhHHHHHHHH
Q 035554 192 YSYFYIALNLGC-LFSETVLVYAENMGYWVLGFWICAG 228 (562)
Q Consensus 192 ~~~~~~~~~lg~-~~~~~~~~~l~~~~~~~~~f~i~~~ 228 (562)
.++++...++|. .++|.+++++.+..||+..++....
T Consensus 143 ~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~ 180 (402)
T TIGR00897 143 VGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALA 180 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 999999999996 5889898998887886655554443
No 44
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.88 E-value=2.5e-19 Score=187.79 Aligned_cols=177 Identities=11% Similarity=0.063 Sum_probs=128.9
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHH-HHHHHHHHHHHHhhhcccchHHHH-HHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMG-SLYLSSLMGAFLSDSYLGRYLTCV-TFQAF 111 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grk~~i~-~~~~~ 111 (562)
....+.+++..++.+++.....+.++.|+++++|+|.++.|++.+.+.+ +..++++++|+ +|| +||||.++ .+.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr-~g~r~~~~~~~~~~ 91 (393)
T PRK15011 14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDK-RGDRKSLIVFCCLL 91 (393)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-ccchhHHHHHHHHH
Confidence 4577888888999999999999999999999999999999999876655 55566666666 999 79998755 45555
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
.+++..+..++ + +.+.+++.+.+.+...+...|....+..|..++++ |..+..
T Consensus 92 ~~~~~~~~~~~---~--------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 144 (393)
T PRK15011 92 GVLACTLFAWN---R--------------------NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG----REAVMF 144 (393)
T ss_pred HHHHHHHHHHh---h--------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc----chHHHH
Confidence 55666655554 1 25555444444443344667788888887665443 002334
Q ss_pred HHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 035554 192 YSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
.++.+.+.++|..++|.+++++.+..||+..|++.++..++..+..+.
T Consensus 145 ~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 145 SSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 478888999999999999999998889999999887766555544443
No 45
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.88 E-value=5.4e-20 Score=193.90 Aligned_cols=176 Identities=11% Similarity=0.009 Sum_probs=148.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 32 GGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
.+|+.++.+.+..++.......+.... ..+++++|++..+.|++.+.+.++..+++++.|+++|| +||||++..++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~ 82 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFAG-LTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAI-IGARRWIAGIMVL 82 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHHH-HhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hChHHHHHHHHHH
Confidence 356666777776666666666665544 47899999999999999999999999999999999999 7999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
+.++.++++++ + +.+.++++|++.|++.+...|....++.|++|+++ |++.
T Consensus 83 ~~~~~~~~~~~---~--------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~ 133 (412)
T TIGR02332 83 WGIASTATMFA---T--------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARA 133 (412)
T ss_pred HHHHHHHHHHh---c--------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHH
Confidence 99999888876 2 36779999999999999999999999999999877 8999
Q ss_pred HHHHHHHHhHHHHHHhhhhhhccc------ccchhHHHHHHHHHHHHHHHHHH
Q 035554 192 YSYFYIALNLGCLFSETVLVYAEN------MGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~~------~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
.++++...++|..+++.+++++.+ ..|||+.|++.++..++..++.+
T Consensus 134 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~ 186 (412)
T TIGR02332 134 NALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTW 186 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988753 36999999987766554444333
No 46
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.88 E-value=6.3e-20 Score=189.90 Aligned_cols=156 Identities=13% Similarity=0.051 Sum_probs=130.5
Q ss_pred HHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 035554 51 FAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRP 130 (562)
Q Consensus 51 ~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (562)
.|... .+.+++.+++|+|..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++.+++.++ +
T Consensus 19 ~~~~~-~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~---~---- 89 (377)
T TIGR00890 19 VYTWT-LLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADK-FGPRAVAMLGGILYGLGFTFYAIA---D---- 89 (377)
T ss_pred Hhhhh-hHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-cCccchhHHhHHHHHHHHHHHHHH---H----
Confidence 44443 45667788999999999999999999999999999999999 799999999999999999888876 2
Q ss_pred CCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhh
Q 035554 131 HGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVL 210 (562)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~ 210 (562)
+.+.++++|.+.|++.+...+.......+++| ++ |+++.+++..+.++|..+++.+.
T Consensus 90 ----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~ 146 (377)
T TIGR00890 90 ----------------SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFILSPLI 146 (377)
T ss_pred ----------------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhHHHHHH
Confidence 37788999999999999888888888888876 45 78999999999999988776677
Q ss_pred hhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 211 VYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 211 ~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
+.+.+..+|++.|++.++..++..+..+
T Consensus 147 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 174 (377)
T TIGR00890 147 TSVINLEGVPAAFIYMGIIFLLVIVLGA 174 (377)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 7776778999999988776665544433
No 47
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.88 E-value=2.7e-19 Score=186.32 Aligned_cols=175 Identities=17% Similarity=0.091 Sum_probs=146.1
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
+|..+.+....+....+.....+.+|. +.+++|.|+.+.+++.+.+.++..++.++.|+++|| +||||++..+.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~ 81 (385)
T TIGR00710 4 KAFALLLGCLSILGPLGIDMYLPAFPE-IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDR-YGRRPVLLLGLFIFA 81 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHHH
Confidence 344455555555555666666665554 567799999999999999999999999999999999 799999999999988
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.+++..+ + +.+.++++|++.|++.+...+...+++.|.+|+++ |++.++
T Consensus 82 ~~~~~~~~~---~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 132 (385)
T TIGR00710 82 LSSLGLALS---N--------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYS 132 (385)
T ss_pred HHHHHHHHH---c--------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHH
Confidence 888887765 2 37778899999999999999999999999999877 999999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
+.+...++|..++|.+++++.+..+|+..|++.++..++..+..+.
T Consensus 133 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 133 ILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988889999998877766655554443
No 48
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.88 E-value=4.7e-19 Score=188.04 Aligned_cols=174 Identities=16% Similarity=0.100 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhC---CChhhhh---hHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 035554 37 GTLLLVNQGLANLAFAGVEVNMVLFAKSVLR---QTNAEAS---NTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQA 110 (562)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg---~s~~~~~---~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~ 110 (562)
+....+..+++.+-... ......++.++++ .+..+.+ .+.+...++..++.+++|+++|| +||||++..+.+
T Consensus 24 ~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr-~Grr~~l~~~~~ 101 (432)
T PRK10406 24 IVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADK-HGRKKSMLISVC 101 (432)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 33334446666666555 4556678888874 4555433 34444455556999999999999 799999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
++.++.++++++ |+... ........++++|+++|++.|...|...+++.|++|+++ |++
T Consensus 102 ~~~~~~~~~~~~---~~~~~------------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~ 160 (432)
T PRK10406 102 MMCFGSLVIACL---PGYET------------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGF 160 (432)
T ss_pred HHHHHHHHHhhc---CCchh------------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccH
Confidence 999999988776 32000 000124568899999999999999999999999999888 889
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcc--------cccchhHHHHHHHHHHHHH
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAE--------NMGYWVLGFWICAGCDILA 233 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~--------~~~~~~~~f~i~~~~~~~~ 233 (562)
..++.+...+.|..+++.+...+. +.+|||.+|++.++..++.
T Consensus 161 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 161 YASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 999988888888888876654433 2579999999877655443
No 49
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.88 E-value=1.7e-19 Score=188.30 Aligned_cols=173 Identities=13% Similarity=0.042 Sum_probs=150.1
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
++.++.+.+..++.....+...+.+|. +.+++|++..+.+++.+.+.++..+++++.|+++|| +|||+++.++.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~ 79 (382)
T PRK10091 2 KKVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSR-YSLKHILLFLVALCV 79 (382)
T ss_pred cchHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHcc-CccHHHHHHHHHHHH
Confidence 356777888888888888888887766 566799999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.+++.++ + +.+.+++.|++.|++.+...+....++.|++|+++ |++..+
T Consensus 80 ~~~~l~~~~---~--------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 130 (382)
T PRK10091 80 IGNAMFTLS---S--------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVA 130 (382)
T ss_pred HHHHHHHHh---C--------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHH
Confidence 999888776 2 37889999999999999988888888999988766 889999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHH
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSL 237 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~ 237 (562)
++..+.++|..++|.+++++.+..+|++.|++.++..++..+..
T Consensus 131 ~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~ 174 (382)
T PRK10091 131 GMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASI 174 (382)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888899999998887655554433
No 50
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.88 E-value=5.8e-20 Score=194.27 Aligned_cols=387 Identities=10% Similarity=0.028 Sum_probs=221.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+.+|.+....++..++++...++++.|+++++|+|..+.|++.+.+.++..+++++.|+++|| +||||++.++..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr-~g~r~~~~~~~~~~~~ 88 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDK-LGLKKHLLWIISGLLV 88 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHH
Confidence 578888888888889898999999999999999999999999999999999999999999999 7999999887665554
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+..........+... .......+++.+..+.+.....+.. .++.++.. +.++..++.
T Consensus 89 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----~~~g~~~g~ 145 (420)
T PRK09528 89 LFGPFFIYVFAPLLQ---------------YNILLGAIVGGIYLGFGFLAGAGAI----EAYIERVS----RRSGFEYGR 145 (420)
T ss_pred HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHhhhhhccchhhh----hhHHHHHH----hhccccchh
Confidence 433221110000000 0001111222333333333333333 33222111 115667788
Q ss_pred HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCCC
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPT 274 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (562)
.+...++|..++|.+++++.+ .+|+..|++.++..++..++.+..+++.+++ ++.++ ...+.
T Consensus 146 ~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------------~~~~~ 207 (420)
T PRK09528 146 ARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPST-AKVAN----------------ALGAN 207 (420)
T ss_pred hHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccch-hhhcc----------------chhcc
Confidence 888889999999999998876 5899999887776666555544433321111 00000 00000
Q ss_pred CCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeeh--------hhhhhhhhhHHHHHhh
Q 035554 275 NGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCT--------VTQVEEMLSLFVEQGA 346 (562)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~ 346 (562)
... ...+ +.... .+ .+..+.+.. .....++.+.|..+..
T Consensus 208 ~~~--~~~~-------~~~~~-l~-----------------------~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 254 (420)
T PRK09528 208 ASA--VSLK-------DALAL-LK-----------------------LPKFWFLVLYVIGVACFYDVFDQQFPNFFASFF 254 (420)
T ss_pred ccc--ccHH-------HHHHH-cc-----------------------CCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000 00000 00 000010000 0011123344443321
Q ss_pred hccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035554 347 AMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKY 426 (562)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~ 426 (562)
.. ...+ ....+....++.+...+..++.. .+.+|+++ .+.+..+.++.+++....++.
T Consensus 255 ~~-~~~~--~~~~g~~~~~~~~~~~~~~~~~g----~l~dr~g~--------~~~~~~~~~l~~~~~~l~~~~------- 312 (420)
T PRK09528 255 AT-PEQG--TRVFGYLNSFQVFLEALIMFFAP----FIINRIGA--------KNALLLAGTIMAVRIIGSGFA------- 312 (420)
T ss_pred hc-cCcc--hHHHHHHHHHHHHHHHHHHHHHH----HHHHHhCc--------chhhHHHHHHHHHHHHHHHhc-------
Confidence 11 0100 00112222223333333333333 33445543 223556666666666555443
Q ss_pred hccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHH-HHHHHHHHHHHHHHHHHHhHhhhhcC
Q 035554 427 ASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIAL-SMSSTAIGTYVCSMILSVVMVLTTKN 505 (562)
Q Consensus 427 ~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl-~~~~~~lg~~lg~~l~~~i~~~~~~~ 505 (562)
.+.++++...++.+++.....+...+++.+..|++.+++..+. +++...+|..+++.+.|.+.+..
T Consensus 313 ----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~--- 379 (420)
T PRK09528 313 ----------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI--- 379 (420)
T ss_pred ----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 3455666777888888888888888999999999999988765 67888999999999988766522
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 035554 506 GKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARR 544 (562)
Q Consensus 506 ~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 544 (562)
+++..|.+.+++.++..++.++..++
T Consensus 380 -------------G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 380 -------------GFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred -------------CchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 23567777777777666555554443
No 51
>PRK09952 shikimate transporter; Provisional
Probab=99.88 E-value=3.3e-19 Score=189.48 Aligned_cols=177 Identities=11% Similarity=0.025 Sum_probs=131.2
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh--CCChhhhhhHH-----HHHHHHHHHHHHHHHHHhhhcccchHHH
Q 035554 33 GWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVL--RQTNAEASNTF-----SRWMGSLYLSSLMGAFLSDSYLGRYLTC 105 (562)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~l--g~s~~~~~~~~-----~~~~~~~~~~~~~~G~laDr~~Grk~~i 105 (562)
++|..+...+..+++.+-...+....+.++.+++ +.++. .+++. +...++..++.++.|+++|| +|||+++
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr-~Grr~~l 97 (438)
T PRK09952 20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDR-LGRKRML 97 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hccHHHH
Confidence 3466667777777777776666555566666665 66665 34443 23445567888889999999 7999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhh
Q 035554 106 VTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEK 185 (562)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 185 (562)
..+.+++.++.++++++ |+... ........++++|+++|++.|...|....++.|++|+++
T Consensus 98 ~~~~~~~~~~~~~~~~~---~~~~~------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~---- 158 (438)
T PRK09952 98 MLTVWMMGIATALIGLL---PSFST------------IGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK---- 158 (438)
T ss_pred HHHHHHHHHHHHHHhcC---CcHHH------------HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC----
Confidence 99999999999988887 32000 000012258889999999999999999999999999888
Q ss_pred hhhhhhHHHHHHHHhHHHHHHhhhhhhcc--------cccchhHHHHHHHHHHHH
Q 035554 186 KSKTSFYSYFYIALNLGCLFSETVLVYAE--------NMGYWVLGFWICAGCDIL 232 (562)
Q Consensus 186 ~~r~~~~~~~~~~~~lg~~~~~~~~~~l~--------~~~~~~~~f~i~~~~~~~ 232 (562)
|+...+..+.+..+|..++..+..++. +.+|||..|++.++..++
T Consensus 159 --rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~ 211 (438)
T PRK09952 159 --KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI 211 (438)
T ss_pred --CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence 888888888888898888876665543 247999999987765433
No 52
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.88 E-value=2.5e-19 Score=187.75 Aligned_cols=172 Identities=14% Similarity=0.084 Sum_probs=144.4
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 035554 33 GWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFS 112 (562)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~ 112 (562)
.+|..+.+....++..+......+.+|. +.+++|+|..+.+++.+.+.++..++.++.|+++|| +||||++.++.++.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~-i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~grr~~~~~~~~~~ 83 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIAD-MARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDR-VGRRPVILVGMSIF 83 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHH
Confidence 4567777777777777777666666655 456799999999999999999999999999999999 79999999999988
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhH
Q 035554 113 IIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192 (562)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 192 (562)
.++.+++... + +.+.+++.|++.|++.+...+....+..|.+++++ ++++.
T Consensus 84 ~~~~~~~~~~---~--------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 134 (394)
T PRK11652 84 ILGTLVALFA---H--------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHAN 134 (394)
T ss_pred HHHHHHHHHH---c--------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHH
Confidence 8888877665 2 37778999999999998888888888889887766 88899
Q ss_pred HHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHH
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFS 235 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~ 235 (562)
++.+.+..++..++|.+++++.+..+|++.|++.++..++..+
T Consensus 135 ~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~ 177 (394)
T PRK11652 135 SLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF 177 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888999999987765554433
No 53
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.87 E-value=3.8e-19 Score=188.28 Aligned_cols=168 Identities=11% Similarity=0.099 Sum_probs=144.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 32 GGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
.+++......+..+...+..+.... ...++++++|+|+.+.+++.+.+.++..++.++.|+++|| +|||+++.++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr-~g~r~~l~~~~~~ 92 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGFDFMLIFY-IMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADK-FGRKPLMMWSIVA 92 (426)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHH
Confidence 3345566666666666666666544 4456778999999999999999999999999999999999 7999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
..++.+.+.++. +.+.++++|++.|++.+...+....++.|.+|+++ |+++
T Consensus 93 ~~~~~~~~~~~~-----------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~ 143 (426)
T PRK12307 93 YSVGTGLSGLAS-----------------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKA 143 (426)
T ss_pred HHHHHHHHHHHh-----------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHh
Confidence 999998887762 37789999999999999999999999999999888 8999
Q ss_pred HHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHH
Q 035554 192 YSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCD 230 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~ 230 (562)
.++++.+.++|..+++.+.+.+.+..+|++.|++..+..
T Consensus 144 ~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~ 182 (426)
T PRK12307 144 SAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPV 182 (426)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHH
Confidence 999999999999999999999888889999998865443
No 54
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.87 E-value=5.6e-19 Score=186.18 Aligned_cols=159 Identities=14% Similarity=0.097 Sum_probs=134.8
Q ss_pred HHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhccccc
Q 035554 49 LAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLL 128 (562)
Q Consensus 49 ~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (562)
+......+.+|. +.+++|.+..+.++..+.+.++..+++++.|+++|| +|||+++..+.+++.++.+++.++ +
T Consensus 30 ~~~~~~~p~l~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a---~-- 102 (413)
T PRK15403 30 LTTDLIQPGIIN-VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDR-IGRRPVLITGALIFTLACAATLFT---T-- 102 (413)
T ss_pred HHHHhhccCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH-cCchHHHHHHHHHHHHHHHHHHHc---C--
Confidence 333444444444 677899999999999999999999999999999999 799999999999999988888776 2
Q ss_pred CCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhh
Q 035554 129 RPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSET 208 (562)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~ 208 (562)
+.+.++++|+++|++.+...+....++.|.+|+++ |++.+++.+...++|..++|.
T Consensus 103 ------------------~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~ 158 (413)
T PRK15403 103 ------------------SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPL 158 (413)
T ss_pred ------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 37789999999999998767777788899998877 889999999999999999999
Q ss_pred hhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 209 VLVYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 209 ~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
+++++.+..||++.|++.++..+++.+..+
T Consensus 159 lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~ 188 (413)
T PRK15403 159 SGAALMHFVHWKVLFAIIAVMGLIAFVGLL 188 (413)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 999998888999999988877666655433
No 55
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.87 E-value=5.2e-19 Score=190.69 Aligned_cols=176 Identities=14% Similarity=0.096 Sum_probs=130.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhh-hhh-----HHHHHHHHHHHHHHHHHHHhhhcccchHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAE-ASN-----TFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVT 107 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~-~~~-----~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~ 107 (562)
+|..+...+..+++.+-+..+ .+...++.++++.+..+ ..+ +.++..++..+++++.|+++|| +|||+++.+
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~ 92 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVY-GFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDK-YGRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHH
Confidence 355666667777777655544 45556788887643322 122 2466778899999999999999 799999999
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhh
Q 035554 108 FQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKS 187 (562)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 187 (562)
+.+++.++.++++++ |++...+ ...+.+++++|+++|++.|...+...+++.|++|+++
T Consensus 93 ~~~l~~i~~~~~a~~---~~~~~~g------------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------ 151 (490)
T PRK10642 93 TIVIMSISTFCIGLI---PSYATIG------------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------ 151 (490)
T ss_pred HHHHHHHHHHHHHhc---ccHHHHH------------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------
Confidence 999999999999887 3310000 0001248899999999999999999999999999988
Q ss_pred hhhhHHHHHHHHhHHHHHHhhhhhhcc--------cccchhHHHHHHHHHHHH
Q 035554 188 KTSFYSYFYIALNLGCLFSETVLVYAE--------NMGYWVLGFWICAGCDIL 232 (562)
Q Consensus 188 r~~~~~~~~~~~~lg~~~~~~~~~~l~--------~~~~~~~~f~i~~~~~~~ 232 (562)
|+...++...+.++|..+++.+...+. ..+|||+.|++.++..++
T Consensus 152 Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~ 204 (490)
T PRK10642 152 RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII 204 (490)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence 889999988888888887775554332 257999999987654443
No 56
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.87 E-value=4.4e-21 Score=202.10 Aligned_cols=376 Identities=11% Similarity=0.130 Sum_probs=254.6
Q ss_pred hhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCC
Q 035554 65 VLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHS 144 (562)
Q Consensus 65 ~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (562)
+++++..+.+++.+.+..|+.++++++|+++|| +|-|+++..+.++.+++.++.++++..
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k-~G~r~v~~~~~~~sa~~t~l~P~aa~~------------------- 126 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADK-FGARRVFFISGLISALLTLLTPLAASI------------------- 126 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 688999999999999999999999999999999 799999999999999999999988531
Q ss_pred CchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccc-cchhHHH
Q 035554 145 PAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENM-GYWVLGF 223 (562)
Q Consensus 145 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~-~~~~~~f 223 (562)
+++.+++.|+++|++.|...|++..+.+++.|.+| |+++.++.+.+..+|.+++-.++|++.+. .||+.+|
T Consensus 127 --~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sif 198 (466)
T KOG2532|consen 127 --GFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIF 198 (466)
T ss_pred --cchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHH
Confidence 34578999999999999999999999999999999 99999999999999999999999999988 8999999
Q ss_pred HHHHHHHHHHHHHHHhcCcceeecCCCCC-chhHHHHHHHHHHhhhcccCCCCCCCccccchhhhhccCcccccccCchh
Q 035554 224 WICAGCDILAFSSLLSGTLRYRHFKPSGN-PLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFK 302 (562)
Q Consensus 224 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (562)
++.+++.++..++++....+.+.++|.-+ ++++... +.+.. ...+.....+|++..+
T Consensus 199 Y~~g~~g~i~~~~w~~~~~d~P~~h~~is~~El~~I~------~~k~~----------------~~~~~~~~vP~~~i~t 256 (466)
T KOG2532|consen 199 YVFGIVGLIWFILWFLFYSDSPSKHPNISEKELKYIE------KGKSE----------------AHVKKKPPVPYKAILT 256 (466)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHH------hcccc----------------cccCCCCCCCHHHHHc
Confidence 99999888888777766554433332211 1111000 00000 0000012444544332
Q ss_pred HHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHH
Q 035554 303 FLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIV 382 (562)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 382 (562)
-....++.....+ ..|. .....++.|.|+.+..+.|.. .++.++++..+...+...+.+.+.+
T Consensus 257 s~~vwai~~~~f~--------~~~~---~~~l~~y~PtY~~~VL~f~v~------~~G~~salP~l~~~~~k~~~g~lsD 319 (466)
T KOG2532|consen 257 SPPVWAIWISAFG--------GNWG---FYLLLTYLPTYLKEVLGFDVR------ETGFLSALPFLAMAIVKFVAGQLSD 319 (466)
T ss_pred CHHHHHHHHHHHH--------HHHH---HHHHHHHhhHHHHHHhCCChh------hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111111110000 0011 111233678888888777644 4666777777777777666666665
Q ss_pred HhhhhhccCCCCCCChhHHH--HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhH
Q 035554 383 PLYLKVAKRRPKTPSELQRV--GIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQ 460 (562)
Q Consensus 383 ~~~~r~~~~~~~~~~~~~~i--~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~ 460 (562)
.+..| .. .....+++ .++....+++++..++.. +.+. +.....+.++++........
T Consensus 320 ~l~~~-~l----s~t~~rkifn~i~~~~~ai~l~~l~~~~---------------~~~~-~~a~~~l~~~~~~~g~~~~G 378 (466)
T KOG2532|consen 320 RLTFR-IL----SETTVRKIFNTIAFGGPAVFLLVLAFTS---------------DEHR-LLAVILLTIAIGLSGFNISG 378 (466)
T ss_pred HHhhc-cC----chHhHHHHHHhHHHHHHHHHHHeeeecC---------------CCcc-hHHHHHHHHHHHHcccchhh
Confidence 55544 21 11223333 455666666665555541 1111 22222233333333333333
Q ss_pred HHHHHhh-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 035554 461 MEFFASQ-IPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFV 539 (562)
Q Consensus 461 ~~~~~~~-~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~ 539 (562)
....... + +++-+..+|+.+....+.++++|.+++.+.+ ++ +...|+..|++.+++.+++.++|.
T Consensus 379 f~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~------------~~-t~~eW~~VF~i~a~i~~~~~i~f~ 444 (466)
T KOG2532|consen 379 FYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVT------------DN-TREEWRIVFLIAAGILIVGNIIFL 444 (466)
T ss_pred hHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeC------------CC-CHHHHHHHHHHHHHHHHHhchhee
Confidence 4444444 5 4779999999999999999999999886543 11 345678999999999999998888
Q ss_pred HHh
Q 035554 540 VCA 542 (562)
Q Consensus 540 ~~~ 542 (562)
++.
T Consensus 445 ~f~ 447 (466)
T KOG2532|consen 445 FFG 447 (466)
T ss_pred Eee
Confidence 875
No 57
>TIGR00895 2A0115 benzoate transport.
Probab=99.87 E-value=1e-19 Score=189.85 Aligned_cols=172 Identities=14% Similarity=0.130 Sum_probs=141.1
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 035554 33 GWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFS 112 (562)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~ 112 (562)
+|+......+..++..+..+.... ...++.+++|++..+.+++.+.+.++..++.++.|+++|| +|||+++..+.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~ 92 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGYDLAAMGF-AAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADR-IGRKRVLLWSILLF 92 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhhHHHHHHHHHHH
Confidence 344555555555555555554444 4445667799999999999999999999999999999999 79999999999888
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhH
Q 035554 113 IIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192 (562)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 192 (562)
.++.+++.+. + +.+.+++.+++.|++.+...+...+++.|.+|+++ |+++.
T Consensus 93 ~~~~~~~~~~---~--------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~ 143 (398)
T TIGR00895 93 SVFTLLCALA---T--------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAV 143 (398)
T ss_pred HHHHHHHHHc---c--------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhH
Confidence 8888777665 2 36778899999999999999999999999999877 89999
Q ss_pred HHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHH
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFS 235 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~ 235 (562)
++++...++|..+++.+++++.+..+|+..|++.++...+..+
T Consensus 144 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~ 186 (398)
T TIGR00895 144 GLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLL 186 (398)
T ss_pred hhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHH
Confidence 9999999999999999999998888999999887544443333
No 58
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=99.87 E-value=2.5e-21 Score=201.14 Aligned_cols=351 Identities=30% Similarity=0.469 Sum_probs=211.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCC
Q 035554 102 YLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEED 181 (562)
Q Consensus 102 k~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 181 (562)
.|+++++.+++.+|++++.+++..+. . +++.+...+++++.++++|.|+.+|++.++++||+++++
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~-~-------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~ 66 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPS-L-------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD 66 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSS-C-------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcch-h-------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc
Confidence 47899999999999999887754222 1 123356789999999999999999999999999999874
Q ss_pred chhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeec-CCCCCchhH-HHH
Q 035554 182 PKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHF-KPSGNPLSR-FSQ 259 (562)
Q Consensus 182 ~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~ 259 (562)
++ .|.++++++|++.|+|+.+++.+.+++.+.+||.+.|.++.++++++.++++..++++.++ +|.+.+..+ ...
T Consensus 67 ~~---~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~ 143 (372)
T PF00854_consen 67 DS---RRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKL 143 (372)
T ss_dssp TT---HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHH
T ss_pred hh---hhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHH
Confidence 21 2789999999999999999999999999999999999999999999999999988888777 556665555 334
Q ss_pred HHHHHHhhhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhccccc--------ccCCCC--Cccceee
Q 035554 260 VIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADIT--------TNEDQN--PNQWRLC 329 (562)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~--~~~~~l~ 329 (562)
+.....+++....+......++.....+. ....+.....+........... .+++.. .+....+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 217 (372)
T PF00854_consen 144 VLVAAFKKRKLAVPKGSSWLDWALFQYSE------RSIFGIIVFIRAAVIFFPEIFFWALFCQVQRVEELKALIRFLPIF 217 (372)
T ss_dssp HHHHHHHHHCCCH-HHHHHHHHHHHHHCC------CCCCCCCCHHHHHHHHCCCHHHHTTTSSTTTHHHCCHHHCHHHCC
T ss_pred HHHHHHHHhhcccccchHHHHHhhhhhhh------hhhhhhhhhccchhhhhhhhhhcccCCccceeeeeeeeeeccccC
Confidence 44444444433221110001110000000 0000000000100000000000 000000 0000011
Q ss_pred hh-----hhhhhhhhHHHHHhhhccCCCcc-cccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHH
Q 035554 330 TV-----TQVEEMLSLFVEQGAAMNTGVSN-FQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVG 403 (562)
Q Consensus 330 ~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~ 403 (562)
.. ....+.......|...+|....+ +.+|++.++.+|++.++++.|+.+++++|+.++ ++ .+++..++.
T Consensus 218 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~-~~----~~~~~~k~~ 292 (372)
T PF00854_consen 218 LFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR-GI----QPSPPQKFG 292 (372)
T ss_dssp CHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT-----------HHHHH
T ss_pred eEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh-cc----cchhhhhhh
Confidence 00 11111333455555566666666 899999999999999999999999999988872 22 467899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHH
Q 035554 404 IGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSS 483 (562)
Q Consensus 404 ~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~ 483 (562)
+|+++..++++.....+..|.......+ ..+.+|+++.+++.+++|.+..+...+..+|.+|++..+..+|++...
T Consensus 293 ~G~~~~~~~~~~~~~v~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~ 368 (372)
T PF00854_consen 293 IGMVFAILAMFVAAIVEIRRLCYAQPCG----KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFAL 368 (372)
T ss_dssp HH-HHHHHHHHTTTHHHH---HH----T----T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccC----CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHH
Confidence 9999999999998888776655443322 234477789999999999999999999777777777777777766654
Q ss_pred H
Q 035554 484 T 484 (562)
Q Consensus 484 ~ 484 (562)
.
T Consensus 369 ~ 369 (372)
T PF00854_consen 369 S 369 (372)
T ss_dssp H
T ss_pred h
Confidence 4
No 59
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.87 E-value=5.5e-19 Score=191.17 Aligned_cols=181 Identities=13% Similarity=0.056 Sum_probs=135.0
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh----hCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHH
Q 035554 33 GWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSV----LRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTF 108 (562)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~----lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~ 108 (562)
+++.+....+..++..+....+....+..-.+. .+.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++
T Consensus 14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~-~Grr~~~~~~ 92 (502)
T TIGR00887 14 HFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADK-LGRKRVYGME 92 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHH
Confidence 334444555555555555544444444332221 23456678899999999999999999999999 7999999999
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhh
Q 035554 109 QAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSK 188 (562)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 188 (562)
.+++.++.+++.++ ++ .....+...++++|+++|++.|...+..+.++.|.+|+++ |
T Consensus 93 ~~~~~v~~~~~~~~---~~--------------~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------R 149 (502)
T TIGR00887 93 LIIMIIATVASGLS---PG--------------SSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------R 149 (502)
T ss_pred HHHHHHHHHHHHHc---cC--------------cccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------H
Confidence 99999988877765 21 0001125689999999999999999999999999999988 9
Q ss_pred hhhHHHHHHHHhHHHHHHhhhhhhccc-----------------------ccchhHHHHHHHHHHHHHHHHH
Q 035554 189 TSFYSYFYIALNLGCLFSETVLVYAEN-----------------------MGYWVLGFWICAGCDILAFSSL 237 (562)
Q Consensus 189 ~~~~~~~~~~~~lg~~~~~~~~~~l~~-----------------------~~~~~~~f~i~~~~~~~~~~~~ 237 (562)
+++.++.+....+|..+++.++..+.. ..+||+.|.+.++..++..+..
T Consensus 150 g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~ 221 (502)
T TIGR00887 150 GAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFR 221 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988877654321 2479999988776665544443
No 60
>TIGR00898 2A0119 cation transport protein.
Probab=99.86 E-value=2.2e-19 Score=194.53 Aligned_cols=146 Identities=14% Similarity=0.146 Sum_probs=127.1
Q ss_pred HHHHhhCCC---hhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCC
Q 035554 61 FAKSVLRQT---NAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIG 137 (562)
Q Consensus 61 y~~~~lg~s---~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (562)
-+.++++++ ..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++.++.+++ +
T Consensus 114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-~Grr~~~~~~~~~~~i~~~~~~~~---~----------- 178 (505)
T TIGR00898 114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-FGRKKVLLLSTLVTAVSGVLTAFS---P----------- 178 (505)
T ss_pred cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHc---c-----------
Confidence 356789998 8999999999999999999999999999 799999999999998888887776 3
Q ss_pred CcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhccccc
Q 035554 138 QLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMG 217 (562)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~ 217 (562)
+++.++++|++.|++.+...+...+++.|.+|+++ |+.+.++...+..+|.+++|.++.++.+
T Consensus 179 ---------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~-- 241 (505)
T TIGR00898 179 ---------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD-- 241 (505)
T ss_pred ---------cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH--
Confidence 37889999999999999999999999999999888 8899999989999999999988766643
Q ss_pred chhHHHHHHHHHHHHHHHHHHh
Q 035554 218 YWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 218 ~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
||+.|++.++..++..+..++
T Consensus 242 -wr~~~~~~~i~~~~~~~~~~~ 262 (505)
T TIGR00898 242 -WRWLQLAVSLPTFLFFLLSWF 262 (505)
T ss_pred -HHHHHHHHHHHHHHHHHHHHh
Confidence 999999887766655555443
No 61
>PRK15075 citrate-proton symporter; Provisional
Probab=99.86 E-value=1.7e-18 Score=183.80 Aligned_cols=172 Identities=12% Similarity=0.033 Sum_probs=126.4
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHH-HHH-----HHHHHHHHHHHHHHhhhcccchHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTF-SRW-----MGSLYLSSLMGAFLSDSYLGRYLTCVT 107 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~-~~~-----~~~~~~~~~~~G~laDr~~Grk~~i~~ 107 (562)
++.....++..+++.+-...+.... ..+.++++.++.+.+... +.. .+...+++++.|+++|| +||||++..
T Consensus 14 ~~~~~~~~~~~~~~~~d~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~ 91 (434)
T PRK15075 14 ARAILRVTSGNFLEMFDFFLFGFYA-TAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDR-VGRRKGLIV 91 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh-hchHHHHHH
Confidence 3555666666666666666655544 467788998887755433 222 22224678899999999 799999999
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhh
Q 035554 108 FQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKS 187 (562)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 187 (562)
+.+++.++.+++.++ +++.. -.......++++|+++|++.+...|....++.|++|+++
T Consensus 92 ~~~~~~~~~~l~~~~---~~~~~------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------ 150 (434)
T PRK15075 92 TLSIMASGTLLIAFV---PGYAT------------IGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------ 150 (434)
T ss_pred HHHHHHHHHHHHHhC---CcHHH------------HHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc------
Confidence 999999999988876 22000 000001257889999999999999999999999999988
Q ss_pred hhhhHHHHHHHHhHHHHHHhhhhhhc--------ccccchhHHHHHHHH
Q 035554 188 KTSFYSYFYIALNLGCLFSETVLVYA--------ENMGYWVLGFWICAG 228 (562)
Q Consensus 188 r~~~~~~~~~~~~lg~~~~~~~~~~l--------~~~~~~~~~f~i~~~ 228 (562)
|++..+++....++|..+++.+++.+ .+.+|||+.|++..+
T Consensus 151 rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 151 KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 99999998888888888877776655 246799999987544
No 62
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.86 E-value=2.5e-19 Score=190.46 Aligned_cols=153 Identities=14% Similarity=0.125 Sum_probs=125.8
Q ss_pred HHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCC
Q 035554 59 VLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQ 138 (562)
Q Consensus 59 ~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (562)
..++++ +|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++.+++.+. +..
T Consensus 50 ~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~---~~~---------- 114 (438)
T TIGR00712 50 MPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILSAAVMLLMGFV---PWA---------- 114 (438)
T ss_pred hHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc-cCCceehHHHHHHHHHHHHHHhcc---ccc----------
Confidence 446665 59999999999999999999999999999999 799999999988888888776554 210
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcc-ccc
Q 035554 139 LCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAE-NMG 217 (562)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~-~~~ 217 (562)
..+...+.+.|++.|++.+...+.....+.|++|+++ |+++.++++...++|+.+++.+.+... ...
T Consensus 115 ------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~ 182 (438)
T TIGR00712 115 ------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFN 182 (438)
T ss_pred ------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Confidence 1135667788999999999998989999999999888 999999999999999999987776543 346
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 035554 218 YWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 218 ~~~~~f~i~~~~~~~~~~~~~ 238 (562)
+|+..|++.+++.++..++.+
T Consensus 183 ~w~~~f~~~~~~~~i~~~~~~ 203 (438)
T TIGR00712 183 DWHAALYFPAICAIIVALFAF 203 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 899999988776665544433
No 63
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.86 E-value=1.3e-18 Score=181.64 Aligned_cols=367 Identities=12% Similarity=-0.030 Sum_probs=224.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH-HHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF-SII 114 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~-~~~ 114 (562)
..+.+....++...++-...+++|.|++ ++|+|..+.|++.+.+.+...+++++.|.++|| +||++.......+ ..+
T Consensus 5 ~~~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~l 82 (382)
T TIGR00902 5 PFRWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKD-ANHIIIALRLLALASAI 82 (382)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHH
Confidence 3444556666777777778889999986 589999999999999999999999999999999 6985443222111 111
Q ss_pred HHH-HHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 115 GLL-GLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 115 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
..+ ....+ .+++.+++.|.+++.+.+...|...++..+. .++ |++.++
T Consensus 83 ~~~~~~~~~-----------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~g 131 (382)
T TIGR00902 83 FAAAFSAGA-----------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDYG 131 (382)
T ss_pred HHHHHHHhh-----------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCcc
Confidence 111 11122 1477888999999999888888888876553 233 778899
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCC
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMP 273 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (562)
......++|.+++|.+++++.+.+||+..|++.....++..+ .....++.+++++++++.....+..
T Consensus 132 ~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------------ 198 (382)
T TIGR00902 132 KVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLI-GFLIKPTIPPKDAIPEDESQGDSAF------------ 198 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHcCCCCCCCccccccccccchhH------------
Confidence 999999999999999999999999999999877655333332 2222221111000000000000000
Q ss_pred CCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCc
Q 035554 274 TNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVS 353 (562)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (562)
.+. .+++..+.-...... . ......+....+.|..+ .+.+..
T Consensus 199 -------------------~~~-l~~~~~~~~l~~~~l-~--------------~~~~~~~~~~~~~~l~~-~g~s~~-- 240 (382)
T TIGR00902 199 -------------------IAL-LKNPMNLRFLAAVCL-I--------------QGAHAAYYGFSAIYWQA-AGISAS-- 240 (382)
T ss_pred -------------------HHH-HcChHHHHHHHHHHH-H--------------HHHHHHHHHHHHHHHHH-CCCCHh--
Confidence 000 000000000000000 0 00011111233444432 222111
Q ss_pred ccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 035554 354 NFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEE 433 (562)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (562)
..+....... +.+.+......|..+ |.++.+.+.++.++.++......+.
T Consensus 241 ----~~g~l~~~~~--------~~~i~~~~~~~~l~~----r~g~~~~l~~~~~~~~~~~~~~~~~-------------- 290 (382)
T TIGR00902 241 ----ATGLLWGIGV--------LAEIIIFAFSNKLFQ----NCSARDLLLISAIACVGRWAIIGAI-------------- 290 (382)
T ss_pred ----HHHHHHHHHH--------HHHHHHHHHhHHHHh----hCCHHHHHHHHHHHHHHHHHHHHhH--------------
Confidence 1122222222 222222233334433 2345666778888888887766554
Q ss_pred CccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHH-HHHHHHHHHHHHHHHHhHhhhhcCCCCCCCC
Q 035554 434 TSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSM-SSTAIGTYVCSMILSVVMVLTTKNGKPGWVP 512 (562)
Q Consensus 434 ~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~-~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~ 512 (562)
.+.+.+....++.+++++...+....++.+. |++.+++++++++ +..++|..+++.+.|.+.+..
T Consensus 291 ---~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~---------- 356 (382)
T TIGR00902 291 ---EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL---------- 356 (382)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------
Confidence 4556667778999999999999999999988 9999999999986 577899999999999776521
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHH
Q 035554 513 PNLNDGHLDRFFFLSATVTAMNLGV 537 (562)
Q Consensus 513 ~~l~~~~~~~~f~~~~~~~~~~~~~ 537 (562)
+ ...|++.+++.++++++
T Consensus 357 ------g-~~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 357 ------G-AGTFVFMAIIAAAAFFL 374 (382)
T ss_pred ------c-HHHHHHHHHHHHHHHHH
Confidence 1 24567777777665433
No 64
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.86 E-value=5.2e-19 Score=191.08 Aligned_cols=169 Identities=16% Similarity=0.213 Sum_probs=144.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 32 GGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
.+|+.+..+.+..++..+..+.+...+ .++.+++|+|..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~ 94 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVL-TEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDR-YGRRLAMVISIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence 455666677777777666666665544 45678899999999999999999999999999999999 7999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
..++.+++.+. + +.+.++++|++.|++.+...+...+++.|.+|+++ |+++
T Consensus 95 ~~~~~~~~~~~---~--------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~ 145 (496)
T PRK03893 95 FSVGTLACGFA---P--------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKA 145 (496)
T ss_pred HHHHHHHHHHH---h--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHH
Confidence 99888888775 2 37788999999999999999999999999998877 8999
Q ss_pred HHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHH
Q 035554 192 YSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDI 231 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~ 231 (562)
.++++...++|..++|.+.+++.+.++|++.|++..+..+
T Consensus 146 ~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~ 185 (496)
T PRK03893 146 SGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPII 185 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998999999987555443
No 65
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.86 E-value=2.6e-18 Score=184.21 Aligned_cols=383 Identities=15% Similarity=0.099 Sum_probs=252.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.+..++...+..+++......-++-++. ++.-|+...+++.....+-..+..+++|.++|| +.|||+++.+.++.++
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr-~drrrili~~~~~~~~ 87 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADR-FDRRRILILSQLLRAL 87 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHHH
Confidence 56667777777778777776666665555 455688899999999999999999999999999 7999999999887766
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
..+.+++..... ..+.+.+++..++.|++.+...|+..+++.|+.|+++ ...+.++
T Consensus 88 ~~~~L~~l~~~~------------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al 143 (524)
T PF05977_consen 88 VALLLAVLAFFG------------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANAL 143 (524)
T ss_pred HHHHHHHHHHhC------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHH
Confidence 555544432111 1247788888899999999999999999999999888 8899999
Q ss_pred HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCCC
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPT 274 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (562)
.....|+...+||.++|.+....|-.+.|.+++++.++...++...+++.+ ++..+.....+-+...++..+
T Consensus 144 ~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~---~~~~~~e~~~~~l~~G~ryv~----- 215 (524)
T PF05977_consen 144 NSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP---PSSLPRERFFSALREGLRYVR----- 215 (524)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc---ccccchhhhhhhHHHHHHHHh-----
Confidence 999999999999999999988889899999999888776665554433221 111111111211111111100
Q ss_pred CCCCccccchhhhhccCcccccccCchh-HHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCc
Q 035554 275 NGGGLFEVHVREYEANGTRRILHTNDFK-FLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVS 353 (562)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (562)
.....+ .+-...++. ++ ...+...++.+..+..+.+..
T Consensus 216 ----------------------~~~~l~~~l~~~~~~~----------------l~-~~a~~aLlPl~a~~~l~~~a~-- 254 (524)
T PF05977_consen 216 ----------------------SSPPLRSVLLRSFLFN----------------LF-ASAVWALLPLFARDVLGGGAS-- 254 (524)
T ss_pred ----------------------cchHHHHHHHHHHHHH----------------Hh-hhHHHHhhhHHHHHHhCCcHH--
Confidence 000000 000000000 00 011122455555544332211
Q ss_pred ccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 035554 354 NFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEE 433 (562)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (562)
..+.+.....+..++ +.+..+..++. .+..+.+..+.++.+++++..++.
T Consensus 255 ----~yGll~a~~gvGai~-----Gal~~~~l~~~-------~~~~~lv~~~~~~~a~~~~~lal~-------------- 304 (524)
T PF05977_consen 255 ----GYGLLLAAFGVGAIL-----GALLLPRLRRR-------LSSRRLVLLASLLFALALLLLALS-------------- 304 (524)
T ss_pred ----HHHHHHHHHHHHHHH-----HHHHHHHhhcc-------cCcchhhHHHHHHHHHHHHHHhcc--------------
Confidence 112222222333333 32222322221 233445666777777776666554
Q ss_pred CccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCC
Q 035554 434 TSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPP 513 (562)
Q Consensus 434 ~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~ 513 (562)
.+.+...+..++.|++.........+.+.+.+|+++||++++++.+....+..+|..+.|.+.+..
T Consensus 305 ---~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~----------- 370 (524)
T PF05977_consen 305 ---PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF----------- 370 (524)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 456667778899999999999999999999999999999999999999999999999998776522
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 035554 514 NLNDGHLDRFFFLSATVTAMNLGVFVVC 541 (562)
Q Consensus 514 ~l~~~~~~~~f~~~~~~~~~~~~~~~~~ 541 (562)
+....+.+.++..++..++.+..
T Consensus 371 -----g~~~al~~a~~~lll~~~~~~~~ 393 (524)
T PF05977_consen 371 -----GVRTALLIAGAALLLSALIALRF 393 (524)
T ss_pred -----CHHHHHHHHHHHHHHHHHHHHHh
Confidence 22345555555555555554433
No 66
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.85 E-value=1.1e-19 Score=188.23 Aligned_cols=160 Identities=13% Similarity=0.063 Sum_probs=134.9
Q ss_pred HHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccc
Q 035554 48 NLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFL 127 (562)
Q Consensus 48 ~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~ 127 (562)
..........+ .++.+++|++..+.+++.+.+.++..++.++.|+++|| +|||+++..+.++..++.+++.++ +
T Consensus 8 ~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~---~- 81 (379)
T TIGR00881 8 YLVRKNFALAM-PYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDR-SNPRVFLPIGLILCAIVNLFFGFS---T- 81 (379)
T ss_pred HHhHHhhhhhh-HHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHh-hCCeehhHHHHHHHHHHHHHHHHh---h-
Confidence 33334444433 46788899999999999999999999999999999999 799999999999999998888776 2
Q ss_pred cCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHh
Q 035554 128 LRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSE 207 (562)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~ 207 (562)
+.+.+++.|++.|++.+...+...+++.|++|+++ |+++.++.+...++|..++|
T Consensus 82 -------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~ 136 (379)
T TIGR00881 82 -------------------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLP 136 (379)
T ss_pred -------------------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHH
Confidence 37788999999999999999999999999999888 89999999999999999999
Q ss_pred -hhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 208 -TVLVYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 208 -~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
.+++.+.+..+|++.|++.+++.++..++.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (379)
T TIGR00881 137 PLVLFGIAELYSWHWVFIVPGIIAIIVSLICF 168 (379)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 5667777778999999887766555444433
No 67
>PRK11043 putative transporter; Provisional
Probab=99.85 E-value=1e-17 Score=175.99 Aligned_cols=163 Identities=16% Similarity=0.222 Sum_probs=135.0
Q ss_pred HHHHHHhhHHHHHHH--HHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhc
Q 035554 47 ANLAFAGVEVNMVLF--AKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQ 124 (562)
Q Consensus 47 ~~~~~~~~~~~~~~y--~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~ 124 (562)
...+++....+.|.+ +++++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++..+.++..++.+++.++
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~-- 91 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDR-YGRKPVLLAGLSLFALGSLGMLWV-- 91 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhh-cCCcHHHHHHHHHHHHHHHHHHHh--
Confidence 334444444444443 677899999999999999999999999999999999 799999999998888888877665
Q ss_pred ccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHH
Q 035554 125 SFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCL 204 (562)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~ 204 (562)
+ +.+.+++.|+++|++.+...+...+++.|.+++++ +++.++..+...++|..
T Consensus 92 -~--------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 144 (401)
T PRK11043 92 -E--------------------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPA 144 (401)
T ss_pred -c--------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHH
Confidence 2 37778899999999988888888889999998776 77888888888899999
Q ss_pred HHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 035554 205 FSETVLVYAENMGYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 205 ~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
++|.+++++.+..+|+..|++..++.++..+..+.
T Consensus 145 ~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 145 LAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998889999999887766665554443
No 68
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.84 E-value=2.5e-18 Score=204.25 Aligned_cols=156 Identities=12% Similarity=0.015 Sum_probs=129.8
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChh--hhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNA--EASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~--~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
.|.+..+++..++.++...+....+..++.+.++.+.. ..+++.+++.++..++.+++|+++|| +|||++++.+.++
T Consensus 8 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr-~grk~~l~~~~~~ 86 (1146)
T PRK08633 8 IIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADK-FSKNRVIRIVKLF 86 (1146)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhccc-ccHHHHHHHHHHH
Confidence 35777777888888877777777777777777776543 46888999999999999999999999 7999999998877
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
.+++.++..++... .+++.++++|+++|++.+...|+..+++.|++|+++ |+++
T Consensus 87 ~~~~~~~~~~~~~~--------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~ 140 (1146)
T PRK08633 87 EVGLTLLIVLAYYL--------------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRA 140 (1146)
T ss_pred HHHHHHHHHHHHHH--------------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhh
Confidence 66666555443211 137889999999999999999999999999999988 9999
Q ss_pred HHHHHHHHhHHHHHHhhhhhhcccc
Q 035554 192 YSYFYIALNLGCLFSETVLVYAENM 216 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~~~ 216 (562)
++++..+.++|.++++.+++++.+.
T Consensus 141 ~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 141 NGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998765
No 69
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.84 E-value=5.9e-20 Score=185.32 Aligned_cols=180 Identities=11% Similarity=0.108 Sum_probs=159.5
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 035554 33 GWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFS 112 (562)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~ 112 (562)
-++.+.++.....+++.--|.+...+ .=.++.+|.+++..|++.+++.+...++.|+.|+|+|| ++||+++.+|..++
T Consensus 31 ~~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadr-yNR~~v~~vG~~iW 108 (493)
T KOG1330|consen 31 PTLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADR-YNRKRVIAVGIFIW 108 (493)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhh-cCcceEEeeHHHHH
Confidence 34677788888888888888887644 34677899999999999999999999999999999999 69999999999999
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhH
Q 035554 113 IIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192 (562)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 192 (562)
.++.++..+.. ++|++.++|.+.|+|.+.+.|..+++++|.+|+++ |++.+
T Consensus 109 ~~Av~~~~fs~-----------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~ 159 (493)
T KOG1330|consen 109 TLAVFASGFSN-----------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVL 159 (493)
T ss_pred HHHHHHHHHHH-----------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHH
Confidence 99999988862 59999999999999999999999999999999998 99999
Q ss_pred HHHHHHHhHHHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHHHHhcCcc
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMGY-WVLGFWICAGCDILAFSSLLSGTLR 243 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~~-~~~~f~i~~~~~~~~~~~~~~~~~~ 243 (562)
+++|+++++|..+|..++..+.+..+ ||++|+..+++.++..++.++..++
T Consensus 160 ~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e 211 (493)
T KOG1330|consen 160 GIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE 211 (493)
T ss_pred HHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC
Confidence 99999999999999989888887665 9999999998888777766555443
No 70
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.84 E-value=1.1e-17 Score=175.06 Aligned_cols=171 Identities=17% Similarity=0.117 Sum_probs=142.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|-+.+.+...+..-.+.....+.+|. +.+++|.|..+.++..+.+.++..++.++.|+++|| +|||+.+..+.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~lp~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~i 80 (392)
T PRK10473 3 RFLLCSFALVLLYPAGIDMYLVGLPR-IAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADR-SGRKPVAIPGAALFII 80 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHH-hCChHHHHHHHHHHHH
Confidence 33445555555555666666565655 456799999999999999999999999999999999 7999999999999888
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.+++..+ + +.+.++++|+++|++.+...+...+++.|.+|+++ |+++.++
T Consensus 81 ~~~~~~~~---~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~ 131 (392)
T PRK10473 81 ASLLCSLA---E--------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSL 131 (392)
T ss_pred HHHHHHHh---C--------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHH
Confidence 88877665 2 36678889999999999989999999999999888 9999999
Q ss_pred HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHH
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSS 236 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~ 236 (562)
.+...++|..++|.+++++.+..+|+..|++.+++.++..++
T Consensus 132 ~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~ 173 (392)
T PRK10473 132 LNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLL 173 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHH
Confidence 999999999999999998887789999998877665555444
No 71
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.84 E-value=8.7e-18 Score=174.78 Aligned_cols=158 Identities=16% Similarity=0.191 Sum_probs=136.5
Q ss_pred HHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccC
Q 035554 50 AFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLR 129 (562)
Q Consensus 50 ~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~ 129 (562)
+.....+.+|.+.+ ++|+|..+.+++.+.+.++..++.++.|+++|| +|||+++..+.++..++.+++.+. +
T Consensus 6 ~~~~~~p~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~i~~~~~~~~---~--- 77 (377)
T PRK11102 6 AIDMYLPALPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADS-FGRKPVILGGTLVFALAAVACALA---Q--- 77 (377)
T ss_pred HHHHHhccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhh-cCChHHHHHHHHHHHHHHHHHHHH---c---
Confidence 33445567777665 689999999999999999999999999999999 799999999999999888887765 2
Q ss_pred CCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhh
Q 035554 130 PHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETV 209 (562)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~ 209 (562)
+.+.+++.|++.|++.+...+...+++.|.+|+++ |++..++.+...++|..++|.+
T Consensus 78 -----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~ 134 (377)
T PRK11102 78 -----------------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPII 134 (377)
T ss_pred -----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 36778899999999999999999999999999888 9999999999999999999999
Q ss_pred hhhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 210 LVYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 210 ~~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
++++.+..+|++.|++.++..++..+...
T Consensus 135 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (377)
T PRK11102 135 GGWLLVWFSWHAIFWVLALAAILAAALVF 163 (377)
T ss_pred HHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 99998888999999887776665544433
No 72
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.84 E-value=6.8e-18 Score=177.02 Aligned_cols=388 Identities=10% Similarity=0.021 Sum_probs=226.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.+|.+....++...++..+.++++.|+++++|.+..+.|++.+.+.++..+++++.|+++|| +||||.+..+....++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~ 80 (396)
T TIGR00882 2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDK-LGLKKHLLWIISGLLV 80 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHH
Confidence 567888888999999999999999999999999999999999999999999999999999999 7999999987766555
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+..........+.. .......+++.+++.+++.+...|....+..|..+ + ++..++.
T Consensus 81 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~~~g~ 137 (396)
T TIGR00882 81 LFAPFFIYVFGPLL---------------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNFEYGK 137 (396)
T ss_pred HHHHHHHHHhhhHH---------------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------cccccch
Confidence 44322111000100 00012345566788888888888888777766322 2 3356677
Q ss_pred HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCCC
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPT 274 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (562)
.....++|..++|.+++.+.+ .+|+..|++.+++.++..++.+...++. |+++..++ ..+. +.
T Consensus 138 ~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----------~~~~--~~ 200 (396)
T TIGR00882 138 ARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKA----PSSATVAN----------ALGA--NA 200 (396)
T ss_pred hhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCC----chhhhhhc----------cccc--cc
Confidence 777889999999999998865 5999999988776666554444332221 11000000 0000 00
Q ss_pred CCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCcc
Q 035554 275 NGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSN 354 (562)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (562)
.+. .. ++..+....+....+-...... ........++.+.|..+.... ...+
T Consensus 201 ~~~---~~-------~~~~~~l~~~~~~~~~l~~~~~----------------~~~~~~~~~~~~~y~~~~~~~-~~~~- 252 (396)
T TIGR00882 201 SAF---SL-------KLALELFRQRKFWMFVLYVVGV----------------ACVYDVFDQQFANFFTSFFAT-PQQG- 252 (396)
T ss_pred CCC---CH-------HHHHHHHcCCcHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHhccc-cccc-
Confidence 000 00 0000000000000000000000 000001111334444432210 0000
Q ss_pred cccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q 035554 355 FQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEET 434 (562)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (562)
....+.......+...+...... ++.+|.++ .+.+.++.++.+++.......
T Consensus 253 -~~~~g~~~~~~~i~~~~~~~~~g----~l~~r~g~--------~~~l~~~~~l~~l~~~~~~~~--------------- 304 (396)
T TIGR00882 253 -TRVFGYVTTMGELLNALIMFCAP----LIINRIGA--------KNALLIAGTIMSVRIIGSSFA--------------- 304 (396)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcc--------chhHHHHHHHHHHHHHHHHhc---------------
Confidence 00011112222222222222222 33445443 224566666666655543332
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHH-HHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCC
Q 035554 435 SSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIAL-SMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPP 513 (562)
Q Consensus 435 ~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl-~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~ 513 (562)
.+.+++.+..++.+++.........++..+..|++.+++..+. +++...+|+.+++.+.|.+.+.
T Consensus 305 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~------------ 370 (396)
T TIGR00882 305 --TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS------------ 370 (396)
T ss_pred --CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh------------
Confidence 3555666778888888877777777888888999998887766 6788999999999988876552
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHH
Q 035554 514 NLNDGHLDRFFFLSATVTAMNLGV 537 (562)
Q Consensus 514 ~l~~~~~~~~f~~~~~~~~~~~~~ 537 (562)
.+++..|.+.+++.++..+.
T Consensus 371 ----~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 371 ----IGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred ----cccHHHHHHHHHHHHHHHHH
Confidence 13456777777666655444
No 73
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.84 E-value=2.2e-18 Score=179.83 Aligned_cols=392 Identities=13% Similarity=0.107 Sum_probs=229.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHH
Q 035554 73 ASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFY 152 (562)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (562)
-+.+.+++.+|+++++.++|+++|| +|||+.++++.++..++.+++.++...+ .+.+++
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~-~GRK~~l~~~~~l~~~~~~~~~~s~~~~--------------------~~e~li 120 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADR-FGRKNALLLSNLLAVLAALLMGLSKSAP--------------------SFEMLI 120 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHhh--------------------hHHHHH
Confidence 4556788999999999999999999 7999999999998888888877764323 478899
Q ss_pred HHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhh-h-hcccccchhHHHHHHHHHH
Q 035554 153 ISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVL-V-YAENMGYWVLGFWICAGCD 230 (562)
Q Consensus 153 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~-~-~l~~~~~~~~~f~i~~~~~ 230 (562)
++|++.|+..|......+.++.|..|++- ||..-.....+.++|..++..++ . .+.+.-.|++.+....+..
T Consensus 121 ~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~ 194 (485)
T KOG0569|consen 121 LGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPA 194 (485)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999998 99999999999999999996554 2 3444557999998888877
Q ss_pred HHHHHHHHhcC--cceeec-CCCCCchhHHHHHHHHHHhhhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHH
Q 035554 231 ILAFSSLLSGT--LRYRHF-KPSGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRA 307 (562)
Q Consensus 231 ~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (562)
++..+++.+.. |++... +.+.++.++ +++..+- .+......+.+.++..++... ..+..++.+..
T Consensus 195 ~~~l~~l~~~PESPk~Ll~~k~~~~~A~~-------sl~~y~G--~~~~~~~~e~~~~e~~~~~~~---~~~~~sl~~~~ 262 (485)
T KOG0569|consen 195 LLQLALLPFLPESPKYLLIKKGDEEEARK-------ALKFYRG--KEDVEAEIEEMLREIEEEELE---KKKQISLRQLL 262 (485)
T ss_pred HHHHHHHhcCCCCcchHHHHcCCHHHHHH-------HHHHHhC--CCcchhHHHHHHHHHHHhccc---cccCCcHHHHh
Confidence 76666655442 333222 111111111 1121100 000011111100000001000 00111111111
Q ss_pred HhhhcccccccCCCCCccceeehhhhhhh---------hhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHH
Q 035554 308 AIMTSADITTNEDQNPNQWRLCTVTQVEE---------MLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYD 378 (562)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (562)
++...+.+..+..+....| ..+....+..+.+.. .....+.....++....++...+
T Consensus 263 ----------~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~--~a~~an~~~g~v~~~~t~~~~~l-- 328 (485)
T KOG0569|consen 263 ----------KNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPE--EAQYANLGIGIVNLLSTLVSPFL-- 328 (485)
T ss_pred ----------cCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHHHHH--
Confidence 0000001111111100111 111111110111100 00000112222333333333333
Q ss_pred HHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhh-h
Q 035554 379 KLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFV-Y 457 (562)
Q Consensus 379 ~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~-~ 457 (562)
.+|.+| || .+..+..++.++.+.+........+. .+.-.+..+.+.+++.++.++. .
T Consensus 329 ------id~~gR-Rp-------Lll~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~y~~i~~~~~~~~~f~~G~g 386 (485)
T KOG0569|consen 329 ------IDRLGR-RP-------LLLISLSLMAVALLLMSIALFLSNSF--------GSWLSYLCIAAIFLFIISFAIGPG 386 (485)
T ss_pred ------HHhcCC-cH-------HHHHHHHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHHHHhhhcCCC
Confidence 336654 42 34444444444444443333221110 0011122345566666666654 5
Q ss_pred hhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 035554 458 VAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGV 537 (562)
Q Consensus 458 ~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~ 537 (562)
|..+-+..|++|++.|+.++++..+.+.+.+++.......+..... .++|+++.+.+++..+.
T Consensus 387 pi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g-----------------~~~filF~i~~~~~~i~ 449 (485)
T KOG0569|consen 387 PIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG-----------------PYVFILFVIPLAIFLIY 449 (485)
T ss_pred chhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------chhhHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999888887776655321 25788999999999999
Q ss_pred HHHHhhcccccchhhhhhc
Q 035554 538 FVVCARRYKSISLQKQEGE 556 (562)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~ 556 (562)
.++..||+|+|+.++..++
T Consensus 450 ~~~~lPETkgr~~~eI~~~ 468 (485)
T KOG0569|consen 450 LYRYLPETKGRTPYEIIEE 468 (485)
T ss_pred HHHhCcccCCCCHHHHHHH
Confidence 9999999999987665444
No 74
>PRK10133 L-fucose transporter; Provisional
Probab=99.84 E-value=2e-17 Score=175.53 Aligned_cols=155 Identities=15% Similarity=0.055 Sum_probs=126.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 035554 31 TGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQA 110 (562)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~ 110 (562)
+.+...+..+.++.+...+........+|.+ ++++|.|+.+.+++.+.+.++..++.++.|+++|| +||||++..+.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr-~G~r~~l~~g~~ 99 (438)
T PRK10133 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLF 99 (438)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHH
Confidence 3344566777777777777777776666664 88999999999999999999999999999999999 799999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
+++++.+++......+ +++.++++|+++|+|.|...+..++++.|..++++ |..
T Consensus 100 ~~~~~~~l~~~~~~a~--------------------~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~ 153 (438)
T PRK10133 100 LYALGAALFWPAAEIM--------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHF 153 (438)
T ss_pred HHHHHHHHHHHHHhcC--------------------CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHH
Confidence 9999997764221112 47889999999999999999999999998755544 555
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhc
Q 035554 191 FYSYFYIALNLGCLFSETVLVYA 213 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l 213 (562)
..++.+....+|..++|.+++.+
T Consensus 154 ~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 154 RLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888889999998877654
No 75
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.83 E-value=3.9e-18 Score=202.29 Aligned_cols=339 Identities=13% Similarity=0.068 Sum_probs=194.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH--HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchH
Q 035554 71 AEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQA--FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAET 148 (562)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (562)
...++..+++.+...++.+++|+++|| +|||+++..... +...+..+.++.. + ++
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr-~~rk~~~~~~~~~~~~~~~~~~~~~~~--~--------------------s~ 108 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADK-YDKAKLAKILKFAEIGIAALAIYGFHL--N--------------------SV 108 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhh-ccHHHHHHHHHHHHHHHHHHHHHHHHH--h--------------------hH
Confidence 347778888999999999999999999 799998644222 2222222222220 1 47
Q ss_pred HHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHH
Q 035554 149 AIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAG 228 (562)
Q Consensus 149 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~ 228 (562)
+.++++|+++|++.++..|+..+++.|++++++ |+++.++.+.+.++|.++||.++|++.+..+|++.|+..++
T Consensus 109 ~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~ 182 (1140)
T PRK06814 109 PLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMG 182 (1140)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 889999999999999999999999999999988 99999999999999999999999999998999999855555
Q ss_pred HHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHHH
Q 035554 229 CDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAA 308 (562)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (562)
+.++++++.+...+..+ .++.........+.....++. ...+...+.....
T Consensus 183 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~ 233 (1140)
T PRK06814 183 IAVLGWLASLFIPKTGN-AAPDLKIDRNIIRSTITLLKY----------------------------AKADKRIWLAILG 233 (1140)
T ss_pred HHHHHHHHHhhCCCCCC-CCCCCeeccchHHHHHHHHHH----------------------------HhcCchHHHHHHH
Confidence 44444444333322111 111000000000000000000 0000000000000
Q ss_pred hhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhh
Q 035554 309 IMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKV 388 (562)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~ 388 (562)
.. +.......+..+.+.|..+..+.+.. ..+.+.....+..++...+..++ .++.
T Consensus 234 ~~---------------~~~~~~~~~~~~~p~~~~~~~g~~~~------~~g~~~~~~~~g~~ig~~~~g~l----~~~~ 288 (1140)
T PRK06814 234 IS---------------WFWLVGAVVLSQLPLLAKETLGGDEN------VATLFLAVFSVGVAVGSFLASKL----SEGR 288 (1140)
T ss_pred HH---------------HHHHHHHHHHHHhHHHHHHHcCCchH------HHHHHHHHHHHHHHHHHHHHHHH----hCCc
Confidence 00 00000011112445555543222211 12233333333444433333322 2222
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH-HhhhhccCC--CCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 035554 389 AKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQR-RLKYASFGG--EETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFA 465 (562)
Q Consensus 389 ~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~ 465 (562)
.. ...+..+.++.+++.+...+.... ......... .-....+.|.+++..+++|++.++..++..+++.
T Consensus 289 ~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 360 (1140)
T PRK06814 289 IT--------LLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQ 360 (1140)
T ss_pred ee--------eeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 11 112333434433333322221000 000000000 0000134566677888999999999999999999
Q ss_pred hhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 035554 466 SQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMV 500 (562)
Q Consensus 466 ~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~ 500 (562)
+.+|++++|+++|++++...+|..+++.+.+.+..
T Consensus 361 ~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 361 AWANPAHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred hhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998887653
No 76
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.83 E-value=5.9e-17 Score=174.38 Aligned_cols=385 Identities=13% Similarity=0.126 Sum_probs=229.3
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcc-----cchHH-HHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYL-----GRYLT-CVT 107 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-----Grk~~-i~~ 107 (562)
+|+.+.++...+......+.....+|.|+++ .|.|..+.+... ..... +++.++.|.++|| + ||||. +..
T Consensus 11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~-~~~~~-~~~~~l~gpl~Dr-~~~~~~Grrr~~ll~ 86 (491)
T PRK11010 11 QPNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFS-LVGQA-YVFKFLWSPLMDR-YTPPFLGRRRGWLLA 86 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHH-HHHHH-HHHHHHHHHHHHc-ccccCCCCchHHHHH
Confidence 4556677777777778888888888898775 589998988862 22232 3688999999999 7 99986 557
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhh
Q 035554 108 FQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKS 187 (562)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 187 (562)
+.++.+++...+++.. | ..+.+.+.+.+++.+++.+...+...++..|++|+++
T Consensus 87 ~~i~~~~~~~~~a~~~--~------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------ 140 (491)
T PRK11010 87 TQLLLLVAIAAMGFLE--P------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------ 140 (491)
T ss_pred HHHHHHHHHHHHHHcC--C------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------
Confidence 7767767766665541 1 1247778888999999999999999999999999888
Q ss_pred hhhhHHHHHHHHhHHHHHHhhhhhhccc-ccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHh
Q 035554 188 KTSFYSYFYIALNLGCLFSETVLVYAEN-MGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLR 266 (562)
Q Consensus 188 r~~~~~~~~~~~~lg~~~~~~~~~~l~~-~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (562)
|+++.++...+.++|..+++.+++++.+ ..||+..|++.++..++..+..+.. ++.++.+++++..++ .....++
T Consensus 141 rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~-~e~~~~~~~~~~~~~---~~~~~l~ 216 (491)
T PRK11010 141 RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLA-PEPTDTIPVPKTLEQ---AVVAPLR 216 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhc-CCCccccccccchhh---hHHHHHH
Confidence 9999999999999999999999999888 5699999998887666555444332 221111000000000 0000000
Q ss_pred hhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhh
Q 035554 267 KINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGA 346 (562)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 346 (562)
+ . .+++..+.-........ .. ......+.+.|+.+..
T Consensus 217 ~---------------------------~-~~~~~~~~~ll~~~l~~--------------~~-~~~~~~~~~~~l~~~~ 253 (491)
T PRK11010 217 D---------------------------F-FGRNNAWLILLLIVLYK--------------LG-DAFAMSLTTTFLIRGV 253 (491)
T ss_pred H---------------------------H-HcCcCHHHHHHHHHHHH--------------HH-HHHHHHHHHHHHHHhc
Confidence 0 0 00000010000000000 00 0000112333433322
Q ss_pred hccCCCcccccCccccc-cchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035554 347 AMNTGVSNFQIPPASMT-AFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLK 425 (562)
Q Consensus 347 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~ 425 (562)
+.+.. ..+... ....+..++...+.+ .+.+|+++ .+.+..+.++.+++.+.+.....
T Consensus 254 G~s~~------~~g~~~~~~g~i~~iiG~ll~G----~L~dr~g~--------~~~l~i~~~l~~l~~l~~~~l~~---- 311 (491)
T PRK11010 254 GFDAG------EVGLVNKTLGLLATIVGALYGG----ILMQRLSL--------FRALMIFGILQGVSNAGYWLLSI---- 311 (491)
T ss_pred CCCHH------HHHHHHHHHHHHHHHHHHHHHH----HHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHh----
Confidence 22211 111111 111122223333333 33445443 11233333433333332221100
Q ss_pred hhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcC
Q 035554 426 YASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKN 505 (562)
Q Consensus 426 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~ 505 (562)
...+.+.+....++..+..++..+..+++..+.+|++.+++..|+.+...++|..+++.+.|.+.+..
T Consensus 312 ---------~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~--- 379 (491)
T PRK11010 312 ---------TDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH--- 379 (491)
T ss_pred ---------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 01233334445566555666666777899999999999999999999999999998888888766521
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 035554 506 GKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCA 542 (562)
Q Consensus 506 ~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~ 542 (562)
++...|.+.+++++.+++..+.+.
T Consensus 380 -------------G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 380 -------------GWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred -------------ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678888888888777776654
No 77
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.83 E-value=1.8e-18 Score=178.97 Aligned_cols=161 Identities=14% Similarity=0.022 Sum_probs=135.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|..+...+..++.....+...+.+|.++++++|+|..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~i 79 (366)
T TIGR00886 1 RNLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDK-FGPRYTTTLSLLLLAI 79 (366)
T ss_pred CchHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHH
Confidence 356677777778888888888888888999999999999999999999999999999999999 7999999999999999
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.+++.++ + .+.+.++++|+++|++.+. .+...+++.|++|+++ |+++.++
T Consensus 80 ~~~~~~~~---~-------------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~~~~~ 130 (366)
T TIGR00886 80 PCLWAGLA---V-------------------QSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGTALGL 130 (366)
T ss_pred HHHHHHHH---h-------------------hhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhHHHHH
Confidence 98888776 2 0377788999999999665 4567889999999888 8999999
Q ss_pred HHHHHhHHHHHHhhhhhhccc----------ccchhHHHHH
Q 035554 195 FYIALNLGCLFSETVLVYAEN----------MGYWVLGFWI 225 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~----------~~~~~~~f~i 225 (562)
+....++|..+++.+++.+.+ ..+|++.|++
T Consensus 131 ~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 131 AAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 988888888888777766543 2379999843
No 78
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.83 E-value=3e-17 Score=172.04 Aligned_cols=180 Identities=18% Similarity=-0.006 Sum_probs=133.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.+++..+..+......+...+..+...+.++|+|..|.+++.+++.+++.++.++.|++.|| +|.|+++.++.++..+
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr-~G~R~v~~~~~ll~~i 112 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPI-FGGRRWTVFSTAILII 112 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHH
Confidence 666666666555545555454444443444899999999999999999999999999999999 7999999999999888
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
..+++.++.+. ...+++.+++.|++.|++ +...+.....+.+++|+++ |+++.++
T Consensus 113 ~~~~~~~a~~~------------------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi 167 (462)
T PRK15034 113 PCVWLGIAVQN------------------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGI 167 (462)
T ss_pred HHHHHHHHHcc------------------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHH
Confidence 88887764110 012488899999999998 6688889999999999888 9999999
Q ss_pred HHHHHhHHHHHHhhhhhhcc-----c-------------ccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 195 FYIALNLGCLFSETVLVYAE-----N-------------MGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~-----~-------------~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
+....|+|..+++++.+.+. . ..+|+.++++..+..++..++.++.
T Consensus 168 ~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 168 NGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 87777788776665554322 1 2346666666555555554444443
No 79
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.82 E-value=1.4e-16 Score=168.17 Aligned_cols=394 Identities=10% Similarity=0.056 Sum_probs=221.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc-hHHHHHHHHHHHHHH
Q 035554 38 TLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGR-YLTCVTFQAFSIIGL 116 (562)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-k~~i~~~~~~~~~~~ 116 (562)
..+-+..++.+.++-...+.++.|+++++|++..+.|++.+.+.++..+++++.|+++|| +|| |+++.++.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr-~g~~r~~~~~~~~~~~~~~ 83 (418)
T TIGR00889 5 AKLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADK-WLSAQKVYAVCHFAGALLL 83 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHH
Confidence 345566667777777778999999999999999999999999999999999999999999 665 778888877777776
Q ss_pred HHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCC--C-chhhhhhhhhHH
Q 035554 117 LGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEE--D-PKEKKSKTSFYS 193 (562)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~--~-~~~~~~r~~~~~ 193 (562)
.+..+. + +++.+++.+++.+++.+...|...++..+...+. + .+.. +|.+.++
T Consensus 84 ~~~~~~---~--------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~-~~~r~~G 139 (418)
T TIGR00889 84 FFAAQV---T--------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDF-PPIRVMG 139 (418)
T ss_pred HHHHHh---c--------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcC-CCeeeeh
Confidence 666554 1 3666778888888887777776665543222100 0 0000 0444443
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCC-CchhHHHHH-HHHHHhhhccc
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSG-NPLSRFSQV-IVASLRKINLE 271 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~ 271 (562)
.+|.+++|.+++.+.....|. +|++.++..++..+..+. .++.+++++++ ...++.... ....+|+
T Consensus 140 ------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~k~---- 207 (418)
T TIGR00889 140 ------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFALT-LPDIPVAKSTAKMSIKVMLGLDAFILFKN---- 207 (418)
T ss_pred ------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHhc-CCCCCCCccccccCHHHHhhhhHHHHhcC----
Confidence 478888888888874332343 465555544444433322 22211110000 000000000 0000000
Q ss_pred CCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCC
Q 035554 272 MPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTG 351 (562)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 351 (562)
.....+-....... ..........+.+..+. +.+..
T Consensus 208 ---------------------------~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~-g~~~~ 243 (418)
T TIGR00889 208 ---------------------------KRMAIFFFFSMLLG----------------APLQITNIFGNGFLHEF-GRNPE 243 (418)
T ss_pred ---------------------------CCeeeHHHHHHHHH----------------hHHHHHHHhHHHHHHHh-ccccc
Confidence 00000000000000 00000001122222221 10100
Q ss_pred Cc-ccc-cCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 035554 352 VS-NFQ-IPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASF 429 (562)
Q Consensus 352 ~~-~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~ 429 (562)
.. .+. ...+....+..+..++...+.+ .+.+|+++ .+.+..+.++.+++........
T Consensus 244 ~~~~~~~~~~g~~~~~~~i~~i~~~~~~g----~l~dr~g~--------r~~l~~~~~~~~v~~~l~~~~~--------- 302 (418)
T TIGR00889 244 FADSFVVKNASIWMSLSQFSEIFFILTIP----FFLKRFGI--------KKVMLLSLVAWALRFGFFAYGD--------- 302 (418)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHhCc--------HHHHHHHHHHHHHHHHHHHHcC---------
Confidence 00 000 0112222222222323333333 33445432 3356666666666655544320
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHH-HHHHHHHHHHHHHHHHhHhhhhcCCCC
Q 035554 430 GGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSM-SSTAIGTYVCSMILSVVMVLTTKNGKP 508 (562)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~-~~~~lg~~lg~~l~~~i~~~~~~~~~~ 508 (562)
....+.+.+.+..++.+++++...+....++.+..|++.||+++|+.+ ...++|..+|+.+.|.+.+.....+
T Consensus 303 ----~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~-- 376 (418)
T TIGR00889 303 ----PEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYG-- 376 (418)
T ss_pred ----cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccc--
Confidence 001123345567889999999999999999999999999999999997 6789999999999997766431100
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 035554 509 GWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARRYKS 547 (562)
Q Consensus 509 ~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 547 (562)
..+++..|.+.+++.+++.+.++++.++.++
T Consensus 377 --------~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 377 --------TFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred --------CCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 0135678888888888888777777765433
No 80
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.82 E-value=4.8e-17 Score=169.78 Aligned_cols=338 Identities=10% Similarity=0.023 Sum_probs=200.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccch----HHHHHHHHHHHHHHHH
Q 035554 43 NQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRY----LTCVTFQAFSIIGLLG 118 (562)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk----~~i~~~~~~~~~~~~~ 118 (562)
..++..+++..+.+++|.|+++ +|.|..+.|++.+.+.+...++.++.|.++|| +||+ +.+.++..+. ...
T Consensus 12 ~~~~~~~~~g~~~p~l~~~l~~-~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~---~~~ 86 (382)
T PRK11128 12 SYFGYFFAYGVFLPFWSVWLKG-QGYTPETIGLLLGAGLVARFLGSLLIAPRVKD-PSQLIPALRLLALLTLLF---AVA 86 (382)
T ss_pred HHHHHHHHHHHHhhhHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhh-hcchHHHHHHHHHHHHHH---HHH
Confidence 3555667777888899999965 79999999999999999999999999999999 7984 3332222221 111
Q ss_pred HHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHH
Q 035554 119 LSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIA 198 (562)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 198 (562)
.... ..+.+.+++.|++.+++.+...|...++..++ .++ |++.++..+..
T Consensus 87 ~~~~----------------------~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~~~~~ 136 (382)
T PRK11128 87 FWFG----------------------AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGKVRLW 136 (382)
T ss_pred HHHh----------------------cccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcchHHHH
Confidence 1111 12477888899999999998999888887775 233 66778888888
Q ss_pred HhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCCCCCCC
Q 035554 199 LNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGGG 278 (562)
Q Consensus 199 ~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (562)
.++|.+++|.+++++.+.+||+..|++.++..++..+... ..++. +|++++.+. . +. ....
T Consensus 137 ~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~----------~-~~----~~~~ 197 (382)
T PRK11128 137 GSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQL-LRPTI---MPQGESRQQ----------E-SA----GWPA 197 (382)
T ss_pred HHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH-ccCCC---CCccccccc----------c-cc----ccch
Confidence 8999999999999999989999999877765544433322 22211 111110000 0 00 0000
Q ss_pred ccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCcccccC
Q 035554 279 LFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSNFQIP 358 (562)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (562)
. .+. .+++..+.-....... ...........+.|..+ .+.+. ..
T Consensus 198 ~-------------~~i-~~~~~~~~~~~~~~l~---------------~~~~~~~~~~~~~~~~~-~g~s~------~~ 241 (382)
T PRK11128 198 W-------------KAL-LKEPTVWRFLLCVSLL---------------QGSHAAYYGFSAIYWQA-AGYSA------ST 241 (382)
T ss_pred H-------------HHH-HcChhHHHHHHHHHHH---------------HHHhHhHHHHHHHHHHH-CCCCH------hH
Confidence 0 000 0000000000000000 00000111123334332 11111 11
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccch
Q 035554 359 PASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLS 438 (562)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (562)
.+.+...+.+..++...+.+ .+.+|+ +..+.+..+.++.+++.+..... .+
T Consensus 242 ~g~~~~~~~~~~~~~~~~~g----~l~~r~--------~~~~~l~~~~~~~~~~~~~~~~~-----------------~~ 292 (382)
T PRK11128 242 IGYLWSLGVVAEVLIFAFSN----RLFRRW--------SARDLLLLSAICGVVRWGLMGST-----------------TA 292 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHC--------CHHHHHHHHHHHHHHHHHHHHhh-----------------hh
Confidence 12222222222222222222 222332 24445666777777766555443 35
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHH-HHHHHHHHHHHHHHHHhHh
Q 035554 439 IFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSM-SSTAIGTYVCSMILSVVMV 500 (562)
Q Consensus 439 ~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~-~~~~lg~~lg~~l~~~i~~ 500 (562)
.+.+++..++.|++++...+....+..+. |++.+++.+++++ ....+|..+|+.+.|.+.+
T Consensus 293 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~ 354 (382)
T PRK11128 293 LPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ 354 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667788999999999999988888887 5566789999886 6667888999999887765
No 81
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.81 E-value=4.1e-17 Score=173.27 Aligned_cols=354 Identities=13% Similarity=0.088 Sum_probs=208.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc---ccchH-HHHHHHHHHHHHHHHH
Q 035554 44 QGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSY---LGRYL-TCVTFQAFSIIGLLGL 119 (562)
Q Consensus 44 ~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grk~-~i~~~~~~~~~~~~~~ 119 (562)
.+..++.+..+.++++.|+++++|+++.++|++.+...+...+..|+.|+++||. +|||| .++.+....+++.+++
T Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~ 87 (437)
T TIGR00792 8 DFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLL 87 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHH
Confidence 4456667777888899999999999999999999999999999999999999973 57755 5667777777777776
Q ss_pred HhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCC-CCchhhhhhhhhHHHHHHH
Q 035554 120 SFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDE-EDPKEKKSKTSFYSYFYIA 198 (562)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~ 198 (562)
... |+. ........+++.+++.+++.+...++..++..|..++ ++ |++..++.+.+
T Consensus 88 ~~~---~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~~~~~ 144 (437)
T TIGR00792 88 FTT---PDF--------------SATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTFRRFG 144 (437)
T ss_pred HhC---CCC--------------CcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHHHHHH
Confidence 554 320 0012355667777888888888888888888888753 34 78889998888
Q ss_pred HhHHHHHHhhhhhhcc-------cccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCC-CchhHHHHHHHHHHhhhcc
Q 035554 199 LNLGCLFSETVLVYAE-------NMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSG-NPLSRFSQVIVASLRKINL 270 (562)
Q Consensus 199 ~~lg~~~~~~~~~~l~-------~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 270 (562)
.++|..+++.+.+.+. +..+|+..+.+.+++.++..++.+...++.+.+++.+ ++.....+..+...++
T Consensus 145 ~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~--- 221 (437)
T TIGR00792 145 ATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQIFKALFKN--- 221 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccccCCCHHHHHHHHhCC---
Confidence 8888877766554433 2458999888777766555544333332211110110 0000000000000000
Q ss_pred cCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccC
Q 035554 271 EMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNT 350 (562)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 350 (562)
.....+-...... . ..........+.|.....+ +
T Consensus 222 ----------------------------~~~~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~-~- 255 (437)
T TIGR00792 222 ----------------------------DQLLILCLAYLFY-N---------------LAFNIKNGVQVYYFTYVLG-D- 255 (437)
T ss_pred ----------------------------HHHHHHHHHHHHH-H---------------HHHHHHcchhheeEeeecC-C-
Confidence 0000000000000 0 0000000000111110000 0
Q ss_pred CCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 035554 351 GVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFG 430 (562)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~ 430 (562)
....+.+.....+..++..++.. ++.+|+++ .+.+..+.++.+++.....+.
T Consensus 256 -----~~~~~~~~~~~~i~~ii~~~~~~----~l~~r~g~--------~~~~~~~~~~~~~~~~~~~~~----------- 307 (437)
T TIGR00792 256 -----PELFSYMGSIAIVAGLIGVLLFP----RLVKKFGR--------KILFAGGILLMVLGYLIFFFA----------- 307 (437)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHHH----HHHHHhCc--------HHHHHHHHHHHHHHHHHHHHc-----------
Confidence 00011111222233333333333 33344432 234556666666665554332
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCC-------chhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 035554 431 GEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIP-------NGLKSLGIALSMSSTAIGTYVCSMILSVVMVLT 502 (562)
Q Consensus 431 ~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~ 502 (562)
..+.+...+..++.+++.+...+..+++..+.+| ++.+|.++|++++...+|..+++.+.+.+.+..
T Consensus 308 -----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 308 -----GSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred -----chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1233445567788889999889888999888876 567899999999999999999999999876643
No 82
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.80 E-value=4.6e-16 Score=163.51 Aligned_cols=166 Identities=13% Similarity=0.037 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcc-----cchH-HHHHHHHHHHH
Q 035554 41 LVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYL-----GRYL-TCVTFQAFSII 114 (562)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-----Grk~-~i~~~~~~~~~ 114 (562)
+...+.....+.-...-+|.|+++ .|+|.++.|++...... .+..++.|+++|| + |||| .+.++.++.++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr-~~~~~~g~rr~~l~~~~~~~~l 80 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDR-YTPPLLGRRRGWLLLTQVGLAA 80 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCcchhHHHHHHHHHHH
Confidence 344555666666777889999986 49999999998776655 6889999999999 7 8876 67777777877
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+..++.+. +. ..+.+.+++..++.++..+...|+..+++.|++|+++ |+++.++
T Consensus 81 ~~~~l~~~---~~-----------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~ 134 (402)
T PRK11902 81 SIAAMAFC---PP-----------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAV 134 (402)
T ss_pred HHHHHHhc---Cc-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHH
Confidence 77766654 11 1246666666667788888899999999999999888 9999999
Q ss_pred HHHHHhHHHHHHhhhhhhcccc-cchhHHHHHHHHHHHHHHHH
Q 035554 195 FYIALNLGCLFSETVLVYAENM-GYWVLGFWICAGCDILAFSS 236 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~-~~~~~~f~i~~~~~~~~~~~ 236 (562)
...+.++|..+++.+++++.+. .||+..|++.++..++..+.
T Consensus 135 ~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 135 KVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888875 59999999877766554443
No 83
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.80 E-value=7.8e-17 Score=161.71 Aligned_cols=392 Identities=14% Similarity=0.009 Sum_probs=246.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 035554 31 TGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQA 110 (562)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~ 110 (562)
+.++|.+++..... ...++.+.+...+.+++++++|+|+.|.+++..+-.+...+..++-|.+.|| +|.|++..++.+
T Consensus 10 ~~~~~~L~~S~~af-~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~dr-fGgR~~~~~s~~ 87 (417)
T COG2223 10 RIARRNLWLSTLAF-DVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDR-FGGRKWTILSML 87 (417)
T ss_pred cchhHHHHHHHHHH-HHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc-cCchHHHHHHHH
Confidence 34456666655544 3445555566677788889999999999999999999999999999999999 799999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
+..+-.+...++.+.|+ .+.+++..++.|++.+. +....+.++.+||+++ .|.
T Consensus 88 l~~IP~~~~~~a~~~~~--------------------~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~------qG~ 140 (417)
T COG2223 88 LLLIPCLGLAFAVTYPS--------------------TWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEK------QGL 140 (417)
T ss_pred HHHHHHHHHHHHccCCc--------------------hHHHHHHHHHHhcccce-ehcccccccccCChhh------hhH
Confidence 99998888888854333 57899999999998555 5677888999999988 889
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccccc---hhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhh
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENMGY---WVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRK 267 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~---~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (562)
+.+++. ..|+|..+..++++++....+ |+....+..+..++..++.++..++.+..++..++... ..++...+
T Consensus 141 AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~--~~~~~v~~- 216 (417)
T COG2223 141 ALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP--AQLKAVFS- 216 (417)
T ss_pred HHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch--hHHHHHhc-
Confidence 999999 999999999999999988888 89888888888877777666655443332222211110 00000000
Q ss_pred hcccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhh
Q 035554 268 INLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAA 347 (562)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 347 (562)
++..|+-.. .+... ...+.....+++.|+.....
T Consensus 217 -------------------------------~~~~W~lsl--lY~~t-------------FG~Fvgfs~~l~~~~~~~fg 250 (417)
T COG2223 217 -------------------------------NKDTWLLSL--LYFAT-------------FGGFVGFSAYLPMYLVTQFG 250 (417)
T ss_pred -------------------------------CcchHHHHH--HHHHH-------------HHHHHHHHHHHHHHHHHhcC
Confidence 111111000 00000 00000011145555553333
Q ss_pred ccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 035554 348 MNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYA 427 (562)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~ 427 (562)
.+.. ..+.+....++...+.-|+-+ +..+ |.+..+...+.+..++++.....+..+.
T Consensus 251 ~~~~------~Ag~~a~~f~~~g~l~Rp~GG--------~LsD----R~Gg~rv~~~~f~~~~~~~~~l~~~~~~----- 307 (417)
T COG2223 251 LSPV------TAGLIAFLFPLIGALARPLGG--------WLSD----RIGGRRVTLAVFVGMALAAALLSLFLTG----- 307 (417)
T ss_pred CChh------hHHHHHHHHHHHHHHHHhccc--------hhhh----hccchhHHHHHHHHHHHHHHHHHccccc-----
Confidence 2211 122333333333444444444 3333 2334456666677777776666554211
Q ss_pred ccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCC
Q 035554 428 SFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGK 507 (562)
Q Consensus 428 ~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~ 507 (562)
++ ...+.+......+...+..++-+...+-++....|+ +.|.+.|+.....++|++.-|...+...+.+
T Consensus 308 --~~---~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~t----- 376 (417)
T COG2223 308 --FG---HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLT----- 376 (417)
T ss_pred --cc---cCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhc-----
Confidence 00 012222333333333344444444444555555543 6889999999999999988888877665533
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 035554 508 PGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARRY 545 (562)
Q Consensus 508 ~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 545 (562)
+.+...|+++..+.+++.+..+..+.+.
T Consensus 377 ----------g~~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 377 ----------GSYTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred ----------ccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2335678888888888888777766553
No 84
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.79 E-value=5.5e-17 Score=168.94 Aligned_cols=165 Identities=12% Similarity=0.068 Sum_probs=117.9
Q ss_pred HHHHHhhHHHHHHHHHHhhC--CChhhhhhHHHH-----HHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHH
Q 035554 48 NLAFAGVEVNMVLFAKSVLR--QTNAEASNTFSR-----WMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLS 120 (562)
Q Consensus 48 ~~~~~~~~~~~~~y~~~~lg--~s~~~~~~~~~~-----~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~ 120 (562)
.+..+.+. .+..++.++.. .++.+.+.+.+. ..++..++.++.|+++|| +||||++..+.++..++.+++.
T Consensus 6 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~ 83 (394)
T TIGR00883 6 WFDFYLYG-FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDR-IGRKKTLVITLLMMGIGTLLIG 83 (394)
T ss_pred HHHHHHHH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh-hhhHHHHHHHHHHHHHHHHHHh
Confidence 33344443 34455555543 344555544433 233334688999999999 7999999999999999988887
Q ss_pred hhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHh
Q 035554 121 FATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALN 200 (562)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 200 (562)
++.+.+. ........++++|+++|++.+...+...+++.|.+|+++ |++..++.+.+..
T Consensus 84 ~~~~~~~---------------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~ 142 (394)
T TIGR00883 84 LLPSYAT---------------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAP 142 (394)
T ss_pred hCCChhh---------------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHH
Confidence 7621110 000012357889999999999999999999999999888 8999999999999
Q ss_pred HHHHHHhhhhhhcc--------cccchhHHHHHHHHHHHHHHH
Q 035554 201 LGCLFSETVLVYAE--------NMGYWVLGFWICAGCDILAFS 235 (562)
Q Consensus 201 lg~~~~~~~~~~l~--------~~~~~~~~f~i~~~~~~~~~~ 235 (562)
+|..+++.++..+. +..+|++.|++.+++.+++..
T Consensus 143 ~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 185 (394)
T TIGR00883 143 VGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY 185 (394)
T ss_pred HHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH
Confidence 99999988766543 346899999887766555443
No 85
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.78 E-value=1.4e-16 Score=172.79 Aligned_cols=155 Identities=14% Similarity=0.168 Sum_probs=125.6
Q ss_pred HhhHHHHHHHHHHhh-----CCCh--hhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhc
Q 035554 52 AGVEVNMVLFAKSVL-----RQTN--AEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQ 124 (562)
Q Consensus 52 ~~~~~~~~~y~~~~l-----g~s~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~ 124 (562)
.+....+..++++.. ..+. .+.+++.+...++..++.+++|+++|+ +|||++++++.+++.+|.++++++
T Consensus 63 ~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~-~GRk~~l~~~~~~~~iG~ii~~~a-- 139 (513)
T KOG0254|consen 63 IGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDR-IGRKKTLLLAVVLFLIGAIIIALA-- 139 (513)
T ss_pred cccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHh--
Confidence 355555555555422 1111 345899999999999999999999999 799999999999999999999987
Q ss_pred ccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHH
Q 035554 125 SFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCL 204 (562)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~ 204 (562)
+ +...++++|++.|+|.|......+.+++|..|++. |+...+.+++..++|..
T Consensus 140 -~--------------------~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~ 192 (513)
T KOG0254|consen 140 -P--------------------SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGIL 192 (513)
T ss_pred -h--------------------hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHH
Confidence 2 38889999999999999999999999999999888 99999999999999999
Q ss_pred HHhhhhhhcccc--cchhHHHHHHHHHHHHHHHHH
Q 035554 205 FSETVLVYAENM--GYWVLGFWICAGCDILAFSSL 237 (562)
Q Consensus 205 ~~~~~~~~l~~~--~~~~~~f~i~~~~~~~~~~~~ 237 (562)
++. +.++..+. .+||..+.+..+..++..+.+
T Consensus 193 ~~~-~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~ 226 (513)
T KOG0254|consen 193 LGY-CINYGTSKVYAGWRIPLGLALIPAVILALGM 226 (513)
T ss_pred HHH-HHhhhhccCCccHHHHHHHHHHHHHHHHHHH
Confidence 885 44444433 489988887776665555543
No 86
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.78 E-value=9.2e-16 Score=161.40 Aligned_cols=173 Identities=12% Similarity=0.026 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIG 115 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~ 115 (562)
.++.+....+...+.+....+.+ ..+++++|.|..+.|++.+.+.++..++.+++|++.|| +|||+++.+++++++++
T Consensus 4 ~~~~~~~~f~~~G~~~~~~~~l~-~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r-~G~r~~~~~g~~l~~~g 81 (410)
T TIGR00885 4 PFALITSLFALWGFANDITNPMV-PQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKK-LSYKAGILLGLFLYALG 81 (410)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHH
Confidence 34455555555555554444444 55688999999999999999999999999999999999 79999999999999999
Q ss_pred HHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHH
Q 035554 116 LLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYF 195 (562)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 195 (562)
.+++..++. ..+++.++++|++.|+|.|...+..++++.+..|+++ |++..++.
T Consensus 82 ~~l~~~~~~--------------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~ 135 (410)
T TIGR00885 82 AFLFWPAAE--------------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLA 135 (410)
T ss_pred HHHHHHHHh--------------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHH
Confidence 877654421 1247788999999999999999999999999888777 77888999
Q ss_pred HHHHhHHHHHHhhhhhhcccc--------------------------cchhHHHHHHHHHHHHHHHH
Q 035554 196 YIALNLGCLFSETVLVYAENM--------------------------GYWVLGFWICAGCDILAFSS 236 (562)
Q Consensus 196 ~~~~~lg~~~~~~~~~~l~~~--------------------------~~~~~~f~i~~~~~~~~~~~ 236 (562)
+...++|..++|.+++.+... .+|+++|++.++..++..++
T Consensus 136 ~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 136 QSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888776321 36999998777655544333
No 87
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.77 E-value=4.8e-16 Score=160.53 Aligned_cols=153 Identities=16% Similarity=0.126 Sum_probs=117.2
Q ss_pred HHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc----ccchHHH-HHHHHHHHHHHHHHHhhhcccccCCC
Q 035554 57 NMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSY----LGRYLTC-VTFQAFSIIGLLGLSFATQSFLLRPH 131 (562)
Q Consensus 57 ~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~----~Grk~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (562)
.+|.+ .+++|+|.++.|+.... .+...+ .++.|.++||+ +||||.+ +.+.++.++..+.+.+. +.
T Consensus 10 ~~~~~-~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~---~~---- 79 (356)
T TIGR00901 10 TLPYW-LRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL---VP---- 79 (356)
T ss_pred HHHHH-HHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC---Cc----
Confidence 34444 55789999999988655 344444 88999999994 2899975 56666666666565554 11
Q ss_pred CCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhh
Q 035554 132 GCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLV 211 (562)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~ 211 (562)
..+.+.+....++.+++.+...++..+++.|++|+++ |+++.++...+.++|.++++.+++
T Consensus 80 -------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~ 140 (356)
T TIGR00901 80 -------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLAL 140 (356)
T ss_pred -------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHH
Confidence 1235566666667788888889999999999998888 999999999999999999999999
Q ss_pred hcccccc--------hhHHHHHHHHHHHHHHHHHH
Q 035554 212 YAENMGY--------WVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 212 ~l~~~~~--------~~~~f~i~~~~~~~~~~~~~ 238 (562)
++.+..+ |+..|++.+++.+++.+..+
T Consensus 141 ~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 141 VLASPEFANTGLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred HHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 8887777 99999988887766555444
No 88
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.77 E-value=2.7e-16 Score=162.39 Aligned_cols=146 Identities=16% Similarity=0.108 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCC
Q 035554 54 VEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGC 133 (562)
Q Consensus 54 ~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (562)
..+.+| .+.+++|+|..+.+++.+.+.++..++.++.|+++|| +||||++.++.++..++.+.+ .. +
T Consensus 19 ~~~~lp-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~-~~---~------- 85 (355)
T TIGR00896 19 VGPLLP-QIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARR-FGEERSVAAGLLLIAAGILIR-SA---P------- 85 (355)
T ss_pred CcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCchHHHHHHHHHHHHHHHHH-Hh---c-------
Confidence 344444 4677899999999999999999999999999999999 799999999988877777655 33 2
Q ss_pred CCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhc
Q 035554 134 GKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYA 213 (562)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l 213 (562)
+.+.+++.|++.|++.+...+..+....|.++ ++ |+++.++++...++|..+++.+++.+
T Consensus 86 -------------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~~l 145 (355)
T TIGR00896 86 -------------GTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATVPL 145 (355)
T ss_pred -------------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778899999999998888888888888875 45 88999999999999999999998888
Q ss_pred cccc--chhHHHHHHHHHHHH
Q 035554 214 ENMG--YWVLGFWICAGCDIL 232 (562)
Q Consensus 214 ~~~~--~~~~~f~i~~~~~~~ 232 (562)
.+.. +|+..|.+.++..++
T Consensus 146 ~~~~~~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 146 AQHSGGHWQQALAWWALPALL 166 (355)
T ss_pred HHhhhhhHHHHHHHHHHHHHH
Confidence 7654 388888766554433
No 89
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.76 E-value=8e-16 Score=158.58 Aligned_cols=155 Identities=14% Similarity=-0.013 Sum_probs=133.9
Q ss_pred hHHHHHHHHHHhhCCChhh-hhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q 035554 54 VEVNMVLFAKSVLRQTNAE-ASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHG 132 (562)
Q Consensus 54 ~~~~~~~y~~~~lg~s~~~-~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (562)
..++...|+.+++|+++.+ .|.+.+++..++.++.+++|+++|| +|.|+++.++.+.+.+..+++.+++
T Consensus 44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l~Wsl~t~L~~fa~--------- 113 (511)
T TIGR00806 44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQALSFVCVWLLLLLGT--------- 113 (511)
T ss_pred hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHH---------
Confidence 3445667899999999999 9999999999999999999999999 7999999999999999999998873
Q ss_pred CCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhh
Q 035554 133 CGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVY 212 (562)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~ 212 (562)
+...+.+.|++.|++.|... +...++..++|+++ |+++.++.+.+.++|.++++.++++
T Consensus 114 --------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~ql 172 (511)
T TIGR00806 114 --------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQL 172 (511)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37779999999999999999 99999999999888 9999999999999999999999999
Q ss_pred cccccchhHHH---HHHHHHHHHHHHHHHhc
Q 035554 213 AENMGYWVLGF---WICAGCDILAFSSLLSG 240 (562)
Q Consensus 213 l~~~~~~~~~f---~i~~~~~~~~~~~~~~~ 240 (562)
+. .+||+.-+ ++......+++++.+++
T Consensus 173 l~-s~gWr~y~~Ln~Isl~s~~~a~~~a~~L 202 (511)
T TIGR00806 173 LV-TLGWISYSTLNIISLVFMTFSVFLALFL 202 (511)
T ss_pred HH-hcCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 54 57887644 45555555555554443
No 90
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.76 E-value=2e-15 Score=159.43 Aligned_cols=436 Identities=14% Similarity=0.066 Sum_probs=243.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhh---cccchHHHHHH-HH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDS---YLGRYLTCVTF-QA 110 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr---~~Grk~~i~~~-~~ 110 (562)
++++.+....+...+++-...++++.|+ +++|.+....+.+..+..+...+.+|+.|+++|| .+||||.++.+ ..
T Consensus 4 ~~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~ 82 (477)
T TIGR01301 4 RKLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAA 82 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHH
Confidence 4566666777777888888888888886 4699999999999999999999999999999993 27999998875 55
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCC-CchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHS-PAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKT 189 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 189 (562)
..+++.+++.++.....+. .++ .+..+ ....+.++++..+..++.....++..++++|.+|+++++ ++
T Consensus 83 ~~~~~l~ll~~~~~~~~~~---~~~----~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~ 151 (477)
T TIGR01301 83 LVAFAVILIGFAADIGHLF---GDN----LDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TR 151 (477)
T ss_pred HHHHHHHHHHhCchhhhhc---ccc----ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HH
Confidence 5666666666652211000 000 00000 011234455555666788888888999999999987611 35
Q ss_pred hhHHHHHHHHhHHHHHHhhhhhhc--ccc-------------cchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCch
Q 035554 190 SFYSYFYIALNLGCLFSETVLVYA--ENM-------------GYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPL 254 (562)
Q Consensus 190 ~~~~~~~~~~~lg~~~~~~~~~~l--~~~-------------~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (562)
.+.++.+...++|..+++.++++. .+. .+.+..|++.+++.+++.++..+..++.+..++++...
T Consensus 152 ~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~ 231 (477)
T TIGR01301 152 IANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFIN 231 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchh
Confidence 799999999999999999888764 111 15688999988877776665444333322111100000
Q ss_pred hHHHHHHHHHHhhhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhh-
Q 035554 255 SRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQ- 333 (562)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 333 (562)
. .++.. .+.+ .....++.. +..... .+..+.++.+..
T Consensus 232 ~-----------------------~~~~~----~~~~-~~~~~~~i~----~~~~~m----------P~~m~~l~~vqff 269 (477)
T TIGR01301 232 S-----------------------EAAPP----SKHG-EEAFFGELF----GAFKYL----------PRPVWILLLVTCL 269 (477)
T ss_pred h-----------------------hcccc----cccc-hhhhHHHHH----HHHHHC----------CHHHHHHHHHHHH
Confidence 0 00000 0000 000000000 000000 000111121110
Q ss_pred -------hhhhhhHHHHHh-hhccCCCcccccCcc-ccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHH
Q 035554 334 -------VEEMLSLFVEQG-AAMNTGVSNFQIPPA-SMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGI 404 (562)
Q Consensus 334 -------~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~ 404 (562)
+..+.+.++.+. .+-+... ...-..+ -..........+...+.+.++-++.++.++|| ..-..
T Consensus 270 sW~a~f~~~~y~T~~vg~~v~~~~~~~-~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k-------~~~~~ 341 (477)
T TIGR01301 270 NWIAWFPFILFDTDWMGREVYGGSVNQ-GAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGK-------RLWGI 341 (477)
T ss_pred HHHHHHHHHHhccHHHHHHHcCCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-------hHHHH
Confidence 011122222221 0100000 0000000 00111111111221233333334445544211 12256
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCC-CC--Cccch-hHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCc--hhHHHHHH
Q 035554 405 GLAIATVAMIIAGIVEQRRLKYASFGG-EE--TSSLS-IFWQTPQYVLLGVSEAFVYVAQMEFFASQIPN--GLKSLGIA 478 (562)
Q Consensus 405 g~ll~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~-~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~--~~rg~~~g 478 (562)
+.++.++|+....+......+..+..+ +. ..+.. .+..+..+.+.|+..+..+...++++.+..|+ +..|.++|
T Consensus 342 s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mg 421 (477)
T TIGR01301 342 VNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMG 421 (477)
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhh
Confidence 777777787777665321110000000 00 00111 35667788999999999999999999999995 45699999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 035554 479 LSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARRYK 546 (562)
Q Consensus 479 l~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 546 (562)
+.|++..+.+.+.....|.+.+...+ +-...+.+-++.++++.+..++..|+.+
T Consensus 422 ilN~~I~lpQii~sl~~g~~~~~~g~--------------~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 422 VLNLAIVIPQIIVSLGSGPWDQLFGG--------------GNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC--------------CCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999888875553321 1123667777777788888777777644
No 91
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.75 E-value=2e-15 Score=150.61 Aligned_cols=384 Identities=14% Similarity=0.100 Sum_probs=234.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|....+..+.|+...........+.+.+++.++++..+++.+..++..++.+++++.|++.+| +|+|+.++.|+.++++
T Consensus 12 ~~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk-~gyk~gi~lgL~l~av 90 (422)
T COG0738 12 KLAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKK-LGYKAGIVLGLLLYAV 90 (422)
T ss_pred eeHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHH-hhhHHHHHHHHHHHHH
Confidence 445555555556666666677788888999999999999999999999999999999999999 7999999999999999
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+..+..-+++ ...+..++++.++.+.|.+...++.+++++.+.++++ -.+-+++
T Consensus 91 g~~lF~pAa~--------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl 144 (422)
T COG0738 91 GAALFWPAAS--------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNL 144 (422)
T ss_pred HHHHHhhhhh--------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHH
Confidence 9988764422 2358889999999999999999999999999998765 4566778
Q ss_pred HHHHHhHHHHHHhhhhhhcccc-------------------cchhHHHHHHHHHHHHHHHHHHhcC-cceeecCCCCCch
Q 035554 195 FYIALNLGCLFSETVLVYAENM-------------------GYWVLGFWICAGCDILAFSSLLSGT-LRYRHFKPSGNPL 254 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~-------------------~~~~~~f~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 254 (562)
.+.++.+|+.++|.+++++..+ ..++.+|.+.+...++..+.....+ |+.+...|+....
T Consensus 145 ~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~ 224 (422)
T COG0738 145 AQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGAS 224 (422)
T ss_pred HHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccccccccc
Confidence 8888999999999999887652 1255666655554444433333322 2111111111000
Q ss_pred hHHHHHHHHHHhhhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhh
Q 035554 255 SRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQV 334 (562)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 334 (562)
+.. .....+++ ... ++.....+... ......
T Consensus 225 ~~~--~~~~l~~~-------------------------------~~~-~~gvl~~FlYV---------------G~Eva~ 255 (422)
T COG0738 225 GSA--GLSSLFQN-------------------------------KHL-RLGVLAIFLYV---------------GAEVAI 255 (422)
T ss_pred ccc--hHHHHHhC-------------------------------hHH-HHHHHHHHHHH---------------hHHHHH
Confidence 000 00000000 001 11111111100 001112
Q ss_pred hhhhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHH
Q 035554 335 EEMLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMI 414 (562)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~ 414 (562)
..++..|..+..+.+.. ......+...+..++...+.. .+.+|+ ++.+.+..-.+...+-++
T Consensus 256 gsfl~~y~~~~~g~~~~------~aa~~~s~~~~~~~vGRFig~----~lm~~~--------~~~k~Laf~a~~~ill~~ 317 (422)
T COG0738 256 GSFLVSYLEELLGLNEQ------QAAYYLSFFWVGFMVGRFIGS----ALMSRI--------KPEKYLAFYALIAILLLL 317 (422)
T ss_pred HHHHHHHHHhcCCccHH------HHHHHHHHHHHHHHHHHHHHH----HHHHHh--------CHHHHHHHHHHHHHHHHH
Confidence 23555565543222211 223333333333433332222 233332 355555444433333333
Q ss_pred HHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 035554 415 IAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMI 494 (562)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l 494 (562)
...+. .+ .+.+-+.++.|+.....+|+.++...+..| +.- ...|..-.+...|+.+-|.+
T Consensus 318 ~~~l~-----------------~g-~v~~~~l~~ig~F~simfPTIfslal~~l~-~~t-s~~s~~l~maivGGAiiP~l 377 (422)
T COG0738 318 AVALI-----------------GG-VVALYALFLIGLFNSIMFPTIFSLALKNLG-EHT-SVGSGLLVMAIVGGAIIPPL 377 (422)
T ss_pred HHHHh-----------------cC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccc-cccceeeeeheecchHHHHH
Confidence 33333 12 344567788899999999999999999999 333 44444556667888888888
Q ss_pred HHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 035554 495 LSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARRYKSI 548 (562)
Q Consensus 495 ~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 548 (562)
.|.+.+.. +....+......|.+-++++.++..+.|.+
T Consensus 378 ~G~i~d~~----------------g~~~~~~~~pllc~lyV~~~~~~~~~~k~~ 415 (422)
T COG0738 378 QGVIADMF----------------GIQLTFLIVPLLCYLYVLFFALIGKKSKGR 415 (422)
T ss_pred HHHHHHhh----------------hhHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 88765522 223445555666666665555555444444
No 92
>PRK09848 glucuronide transporter; Provisional
Probab=99.72 E-value=2e-14 Score=153.32 Aligned_cols=158 Identities=13% Similarity=0.037 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc---ccchHHH-HHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSY---LGRYLTC-VTFQA 110 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grk~~i-~~~~~ 110 (562)
+..+.-.+..+..+.++..+.++++.|+++.+|++..++|.+.+...+...+..++.|+++||. +||||.. ..+.+
T Consensus 8 ~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~ 87 (448)
T PRK09848 8 RTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTA 87 (448)
T ss_pred HHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHH
Confidence 3444444566677788888888899999999999999999999999999999999999999993 3777755 55555
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
...+..+++... |. +.+........++...+.+++.+...++..++..+..++.+ + |.+
T Consensus 88 ~~~~~~~~~~~~---~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~--~---r~~ 146 (448)
T PRK09848 88 PLMIFSVLVFWV---PT-------------DWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ--S---RAR 146 (448)
T ss_pred HHHHHHHHHHhC---cC-------------CCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH--H---HHH
Confidence 444444443221 21 00001123444555566788888888888888777765532 2 556
Q ss_pred hHHHHHHH-----HhHHHHHHhhhhhhc
Q 035554 191 FYSYFYIA-----LNLGCLFSETVLVYA 213 (562)
Q Consensus 191 ~~~~~~~~-----~~lg~~~~~~~~~~l 213 (562)
..++..++ .+++..++|.+.+..
T Consensus 147 ~~~~r~~~~~~~~~~~~~~~~p~i~~~~ 174 (448)
T PRK09848 147 LGAARGIAASLTFVCLAFLIGPSIKNSS 174 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 65555443 345566666665543
No 93
>PRK09669 putative symporter YagG; Provisional
Probab=99.72 E-value=3e-14 Score=151.79 Aligned_cols=179 Identities=12% Similarity=0.054 Sum_probs=124.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc---ccchH-HHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSY---LGRYL-TCVTFQA 110 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grk~-~i~~~~~ 110 (562)
|+-+.--+..+..+..+..+..+++.|+++++|++..++|.+..+..+.-.+..|+.|+++||. +|||| .++.+.+
T Consensus 9 ~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~ 88 (444)
T PRK09669 9 KDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAI 88 (444)
T ss_pred HHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHH
Confidence 4444444555666777777888999999999999999999999999999999999999999993 47644 5556766
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
..+++.+++... |.. +......++++..++.+.+......+..++.+|+.++.+ + |++
T Consensus 89 ~~~i~~~l~f~~---p~~--------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~--e---R~~ 146 (444)
T PRK09669 89 PFGVVCLLTFYT---PDF--------------GATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPR--E---RHS 146 (444)
T ss_pred HHHHHHHHHHhC---CCC--------------CcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHH--H---HHH
Confidence 676666554433 320 012235566666666676666777788899999875422 2 778
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhccc-------ccchhHHHHHHHHHHHHHHH
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAEN-------MGYWVLGFWICAGCDILAFS 235 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~-------~~~~~~~f~i~~~~~~~~~~ 235 (562)
..++...+.++|..+++.+...+.. ..+|+..+.+.+++.++..+
T Consensus 147 l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~ 198 (444)
T PRK09669 147 LQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFF 198 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 8888888888888877654433221 24677777666655544443
No 94
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.70 E-value=2.4e-13 Score=141.79 Aligned_cols=382 Identities=13% Similarity=0.052 Sum_probs=209.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHH
Q 035554 39 LLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLG 118 (562)
Q Consensus 39 ~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~ 118 (562)
.+....++..+.+-...++++.|+++ .|+|..|.|.+.+...+...+.+++.|+++||+..+||.+.+..++.++...+
T Consensus 6 rLs~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~ 84 (400)
T PF03825_consen 6 RLSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLL 84 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Confidence 34445555556666677889999986 67999999999999999999999999999999545677777776666665544
Q ss_pred HHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHH
Q 035554 119 LSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIA 198 (562)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 198 (562)
.... . +++.+++..++..+......|...++.-+...+++.+. +|-|. .
T Consensus 85 ~~~~---~--------------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~Y--G~iRl------w 133 (400)
T PF03825_consen 85 LAFS---S--------------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRGKDY--GRIRL------W 133 (400)
T ss_pred HHHh---c--------------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccCCC--Ccchh------h
Confidence 4433 1 36667777777888888888888888887765432111 13333 3
Q ss_pred HhHHHHHHhhh-hhhccccc---chhHHHHHHHHHHHHHHHHHHhcCcceee-cCCCCCchhHHHHHHHHHHhhhcccCC
Q 035554 199 LNLGCLFSETV-LVYAENMG---YWVLGFWICAGCDILAFSSLLSGTLRYRH-FKPSGNPLSRFSQVIVASLRKINLEMP 273 (562)
Q Consensus 199 ~~lg~~~~~~~-~~~l~~~~---~~~~~f~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (562)
..+|-+++... ++++.... +....+++.+.+.++.....+ ..|+.+. ++.+++..+...+.....+|+
T Consensus 134 GSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l-~lp~~~~~~~~~~~~~~~~~~~~~~llk~------ 206 (400)
T PF03825_consen 134 GSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFAL-FLPKTPPKRSAKESVKKLLGLDALKLLKN------ 206 (400)
T ss_pred hhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHH-hCCCCccccccCCCcccccchHHHHHhcC------
Confidence 34444444221 12222211 223455555543332222222 2222221 111100000000000000010
Q ss_pred CCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCc
Q 035554 274 TNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVS 353 (562)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (562)
++...++-...+.. .....+..+.+.|.++..+.+
T Consensus 207 ------------------------~~~~~Fll~~~l~~-----------------~~~~~~~~f~~~yl~~~gg~~---- 241 (400)
T PF03825_consen 207 ------------------------PRFLVFLLAAFLIG-----------------ISHAAYYTFFSIYLQELGGYS---- 241 (400)
T ss_pred ------------------------ccHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHcccch----
Confidence 01111111110000 000111123344444321110
Q ss_pred ccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 035554 354 NFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEE 433 (562)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (562)
. .........+.+.|-......+|.-+ |.+..+.+.++.+..++=...+....
T Consensus 242 -----~-----~~~g~~~~l~~~aEi~~f~~~~~~~~----r~g~~~ll~~a~~~~~vR~~l~a~~~------------- 294 (400)
T PF03825_consen 242 -----G-----STIGILWALGVVAEIPFFFFSGRFLK----RFGIKWLLLLALVAYAVRWLLYAYFS------------- 294 (400)
T ss_pred -----h-----hHHHHHHHHHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHHHHhc-------------
Confidence 0 01111222333344433334444433 23456666666666655555554430
Q ss_pred CccchhH----HHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHhHhhhhcCCCC
Q 035554 434 TSSLSIF----WQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSS-TAIGTYVCSMILSVVMVLTTKNGKP 508 (562)
Q Consensus 434 ~~~~~~~----~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~-~~lg~~lg~~l~~~i~~~~~~~~~~ 508 (562)
.+.+ .+.+..+++|+..++...+...++.+.+|++.|++++++++.. .++|..+|+.+.|.+.+....+.
T Consensus 295 ---~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~-- 369 (400)
T PF03825_consen 295 ---DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARG-- 369 (400)
T ss_pred ---CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchh--
Confidence 1212 2233456899999999999999999999999999999998765 68999999999998776432111
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 035554 509 GWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARR 544 (562)
Q Consensus 509 ~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 544 (562)
...+..+|.+.+++.++..+.+++..|+
T Consensus 370 --------~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 370 --------MFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred --------hhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 1123456677777777777777766554
No 95
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.69 E-value=9.8e-14 Score=149.01 Aligned_cols=175 Identities=8% Similarity=-0.021 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhh----hcccch-HHHHHHHHH
Q 035554 37 GTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSD----SYLGRY-LTCVTFQAF 111 (562)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Grk-~~i~~~~~~ 111 (562)
-+.--+..+..++.+..+.++++.|+++.+|++...+|.+..+..+.-.+..|+.|+++| | +||| +.++.+...
T Consensus 8 ~~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr-~Grrrp~il~g~i~ 86 (473)
T PRK10429 8 KLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSR-WGKFKPWILIGTLA 86 (473)
T ss_pred HHhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCC-CCCcchhHhhhhHH
Confidence 333445666677888888899999999999999999999999999999999999999999 5 5984 455567767
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCC-CCchhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDE-EDPKEKKSKTS 190 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~ 190 (562)
.+++.+++... |.. +......++++..++.+++......+..++..|+.++ ++ |.+
T Consensus 87 ~~i~~~llf~~---p~~--------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e------R~~ 143 (473)
T PRK10429 87 NSVVLFLLFSA---HLF--------------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE------REQ 143 (473)
T ss_pred HHHHHHHHHcC---CCC--------------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH------HHH
Confidence 77776665432 210 0112344555666677788888888899999998753 34 888
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcc-------cccchhHHHHHHHHHHHHHHH
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAE-------NMGYWVLGFWICAGCDILAFS 235 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~-------~~~~~~~~f~i~~~~~~~~~~ 235 (562)
..++.....++|+.+.+.+...+. +..+|+....+.++..+++.+
T Consensus 144 l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~ 195 (473)
T PRK10429 144 LVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTI 195 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 888877777887666654443221 112456555555554444333
No 96
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=3.8e-15 Score=147.61 Aligned_cols=147 Identities=16% Similarity=0.093 Sum_probs=133.4
Q ss_pred hhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCC
Q 035554 65 VLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHS 144 (562)
Q Consensus 65 ~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (562)
.++-++.+.|++++++.+...+..++.|.+.|| +|+|-.+++|..++..+.+++.+..
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg~--------------------- 157 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFGN--------------------- 157 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHcc---------------------
Confidence 356677899999999999999999999999999 8999999999999999999998873
Q ss_pred CchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHH
Q 035554 145 PAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFW 224 (562)
Q Consensus 145 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~ 224 (562)
+.+.++++|.++|+|.++...+..++++|.||+++. |++++++.-.+..+|-.+||.++|.+.+..|+..+|.
T Consensus 158 --sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFl 230 (464)
T KOG3764|consen 158 --SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFL 230 (464)
T ss_pred --hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHH
Confidence 377799999999999999999999999999998873 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 035554 225 ICAGCDILAFSSLLSG 240 (562)
Q Consensus 225 i~~~~~~~~~~~~~~~ 240 (562)
+.+++.++-..+.++.
T Consensus 231 VL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 231 VLAIVLLLDGALQLLV 246 (464)
T ss_pred HHHHHHHHHHHHHHhe
Confidence 9988877766665444
No 97
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.69 E-value=2.6e-14 Score=155.53 Aligned_cols=141 Identities=18% Similarity=0.097 Sum_probs=126.3
Q ss_pred HhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCC
Q 035554 64 SVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPH 143 (562)
Q Consensus 64 ~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (562)
+.++.+.....+..+++.+|..+++++.|.++|| +|||++++.++++.+++.++.+++ +
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a---~----------------- 169 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFA---P----------------- 169 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHh---C-----------------
Confidence 4566788889999999999999999999999999 899999999999999999888887 3
Q ss_pred CCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHH
Q 035554 144 SPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGF 223 (562)
Q Consensus 144 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f 223 (562)
+.+.+++.|++.|++.+....+...++.|.+++++ |+.+.++ ......++.+++..++++.. +||+.+
T Consensus 170 ---~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~ 237 (521)
T KOG0255|consen 170 ---NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLF 237 (521)
T ss_pred ---cHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHH
Confidence 38889999999999999999999999999999998 9999999 88888888899989999877 899999
Q ss_pred HHHHHHHHHHHHHH
Q 035554 224 WICAGCDILAFSSL 237 (562)
Q Consensus 224 ~i~~~~~~~~~~~~ 237 (562)
++..+..++.++.+
T Consensus 238 ~~~~~~~~~~~~~~ 251 (521)
T KOG0255|consen 238 WIISIPSGLFLLLW 251 (521)
T ss_pred HHHHHHHHHHHHHH
Confidence 98887776665553
No 98
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.68 E-value=1.8e-13 Score=143.28 Aligned_cols=177 Identities=10% Similarity=-0.096 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHH--HHHHHHHHHHHHHH-HHHhhhcccchHHHHHHHHH-H
Q 035554 37 GTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTF--SRWMGSLYLSSLMG-AFLSDSYLGRYLTCVTFQAF-S 112 (562)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~--~~~~~~~~~~~~~~-G~laDr~~Grk~~i~~~~~~-~ 112 (562)
...+....+.+.+-+....+.+|.|+++ .|.|.++.|... ....+...+..|+. ++++|| +||||..++.+.+ .
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~-~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLRE-DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHHHHHH
Confidence 4556666777778888888999999986 599999999873 45566676666666 668999 7999997665533 2
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhH
Q 035554 113 IIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192 (562)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 192 (562)
.+....+.... +. .....+++....+.++..+...+...++..|..++++ ++...
T Consensus 81 ~~~~~~~~~~~--~~-----------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~~ 135 (390)
T TIGR02718 81 SACLASLALVG--PD-----------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAKGN 135 (390)
T ss_pred HHHHHHHHcCC--cc-----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHHH
Confidence 22222222110 11 0112333444455566666777777777777666555 66777
Q ss_pred HHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
+....+..+|..+++...+++.+..||+..|++.++..++..+..+..
T Consensus 136 ~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 136 AVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 778888889999999888899888999999998887776655554443
No 99
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.68 E-value=8.2e-15 Score=144.41 Aligned_cols=118 Identities=18% Similarity=0.109 Sum_probs=104.5
Q ss_pred CCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCc
Q 035554 67 RQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPA 146 (562)
Q Consensus 67 g~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (562)
+.+..-+|.+-+.|.++..+.++..|.+||| .|||.++++|++..++...+++.+.
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~-yGRkpvll~c~~~va~s~ll~~~S~----------------------- 119 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDR-YGRKPVLLACLIGVALSYLLWALSR----------------------- 119 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhh-hCchHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 3344568888899999999999999999999 6999999999999999888887762
Q ss_pred hHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhccc
Q 035554 147 ETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAEN 215 (562)
Q Consensus 147 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~ 215 (562)
++..++++|++.|+..|-. ..+.++++|.+++++ |+.+++....+..+|..+||+++|++.+
T Consensus 120 ~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 120 NFAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence 3666778899999999875 567899999999988 9999999999999999999999999987
No 100
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.67 E-value=1.2e-14 Score=154.09 Aligned_cols=357 Identities=13% Similarity=0.094 Sum_probs=218.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhh----hcccchHHHH-HHHHHHHHHHHH
Q 035554 44 QGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSD----SYLGRYLTCV-TFQAFSIIGLLG 118 (562)
Q Consensus 44 ~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Grk~~i~-~~~~~~~~~~~~ 118 (562)
.+..++.+.....++..|+++.+|+++...|.+..+..+...+..|+.|+++| | +||||..+ +|..+..++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr-~Grrrp~~l~g~i~~~~~~~l 88 (428)
T PF13347_consen 10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTR-WGRRRPWILIGAILLALSFFL 88 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccc-ccccceEeehhhHHHHHHHHH
Confidence 35556666667778999999999999999999999999999999999999999 7 79777665 677777777776
Q ss_pred HHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHH
Q 035554 119 LSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIA 198 (562)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 198 (562)
+.... |. +.+......++.+..++..++......+..++..|+.++++. |.+..++....
T Consensus 89 lf~~~--p~-------------~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~~~~~ 148 (428)
T PF13347_consen 89 LFSPP--PA-------------GLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSWRMIF 148 (428)
T ss_pred hhccc--cc-------------hhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHHHHHH
Confidence 65430 10 000112344556677777899999999999999999876431 88999998888
Q ss_pred HhHHHHHHhhhhhhccccc-------chhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhccc
Q 035554 199 LNLGCLFSETVLVYAENMG-------YWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLE 271 (562)
Q Consensus 199 ~~lg~~~~~~~~~~l~~~~-------~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (562)
.++|..+...+.+.+.+.. +|++...+.+++.+++.++.....++...+.+++++.....+.+
T Consensus 149 ~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~~~~~---------- 218 (428)
T PF13347_consen 149 SMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKISLRDSL---------- 218 (428)
T ss_pred HHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccccccccch----------
Confidence 8888876555555443221 57777777666666555554443333111111111100000000
Q ss_pred CCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCC
Q 035554 272 MPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTG 351 (562)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 351 (562)
+.....+....+-....... ...........+|.....+.+ .
T Consensus 219 ---------------------~~~~~nr~~~~l~~~~~~~~----------------~~~~~~~~~~~y~~~~vl~~~-~ 260 (428)
T PF13347_consen 219 ---------------------RSLFRNRPFRILLLAFFLQW----------------LAFALMNTFLPYYFTYVLGNE-G 260 (428)
T ss_pred ---------------------hhhcccchHHHHHHHHHHHH----------------hhhhhhhhHHHHHHHHHhcCc-h
Confidence 00000011111101000000 000000012223333222221 1
Q ss_pred CcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 035554 352 VSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGG 431 (562)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~ 431 (562)
..+.......+..++..++.. ++.+|+++|+ ....+.++.+++.+...+..
T Consensus 261 ------~~~~~~~~~~~~~~v~~~~~~----~l~~r~gk~~--------~~~~~~~~~~~~~~~~~~~~----------- 311 (428)
T PF13347_consen 261 ------LISIFMLIFFVASIVGSPLWG----RLSKRFGKKK--------VYIIGLLLAALGFLLLFFLG----------- 311 (428)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHH----HHHHHcccee--------ehhhhHHHHHHHHHHHHHHH-----------
Confidence 112222233334444444444 4445654422 45667777777777665551
Q ss_pred CCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCC-------chhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 035554 432 EETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIP-------NGLKSLGIALSMSSTAIGTYVCSMILSVVMVLT 502 (562)
Q Consensus 432 ~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~ 502 (562)
..+.++..+..++.|++.+......++...|..+ ++..|...|++++..-++..+++.+.+.+....
T Consensus 312 ----~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~ 385 (428)
T PF13347_consen 312 ----PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALV 385 (428)
T ss_pred ----hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 1466778889999999999999888899988887 355799999999999999999999998776644
No 101
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.67 E-value=1.1e-13 Score=148.03 Aligned_cols=178 Identities=15% Similarity=0.031 Sum_probs=130.7
Q ss_pred chHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhccc-----chHHHHH
Q 035554 34 WRCG-TLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLG-----RYLTCVT 107 (562)
Q Consensus 34 ~~~~-~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-----rk~~i~~ 107 (562)
++.. ..+....+...+. +.+...++.++++++|+|.++.+...+...+...+-. +.|.++|| ++ ||+.+++
T Consensus 24 ~~~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~-l~g~l~D~-~~i~G~rRr~~l~~ 100 (468)
T TIGR00788 24 PRVVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKP-FAGVMSDT-FPLFGYTKRWYLVL 100 (468)
T ss_pred cchHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHh-cCCCCccchHHHHH
Confidence 4443 4444466777777 8888888999999999999999988888888777765 59999999 67 6777777
Q ss_pred HHHHHH-HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhh
Q 035554 108 FQAFSI-IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKK 186 (562)
Q Consensus 108 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 186 (562)
+.++.. ++...++.. + .......+.+++.+++.+...++..++..|..+ ++++
T Consensus 101 ~~~l~~~~~~~~l~~~---~-------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~--- 154 (468)
T TIGR00788 101 SGLLGSAILYGLLPGK---V-------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS--- 154 (468)
T ss_pred HHHHHHHHHHHhcccc---c-------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---
Confidence 765552 322222211 1 123344457788899999999999999999998 4421
Q ss_pred hhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 187 SKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 187 ~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
.++...++.+...++|..+++.++|++.+..+|+..|++.++..++..+...+.
T Consensus 155 ~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~ 208 (468)
T TIGR00788 155 AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLS 208 (468)
T ss_pred cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhc
Confidence 144566777777889999999999999998899999998887776664444443
No 102
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.66 E-value=2e-14 Score=158.71 Aligned_cols=201 Identities=15% Similarity=0.144 Sum_probs=152.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 32 GGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
..+|.+...+....+......++.......+.++|+++..+.|++.+.+.++..++.++.|+++|| +||||.+.++.++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r-~~r~~~i~~g~ll 107 (633)
T TIGR00805 29 SKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTK-LHRPIVIGIGCAI 107 (633)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcc-cCcceEEEecHHH
Confidence 334555444444555555666777777778899999999999999999999999999999999999 7999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCC-----------CCCcCC-----------------CCC--CchHHHHHHHHHHHHHh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGK-----------IGQLCD-----------------PHS--PAETAIFYISIYLFALG 161 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~-----------------~~~--~~~~~~~~~~~~l~g~g 161 (562)
++++.+++++.+.+.. ++.+++ ..+.|. ..+ ...+..++++|+++|+|
T Consensus 108 ~~lg~ll~alphf~~~--~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG 185 (633)
T TIGR00805 108 MGLGSFLLSLPHFLSG--RYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIG 185 (633)
T ss_pred HHHHHHHHhChHHhcC--CccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhcc
Confidence 9999999887632110 111100 011231 111 11356788999999999
Q ss_pred cccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhccccc----------------------ch
Q 035554 162 IGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMG----------------------YW 219 (562)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~----------------------~~ 219 (562)
.+...+...+++.|.+|+++ |+..+++++....+|.++|+++++++.+.+ +|
T Consensus 186 ~~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaW 259 (633)
T TIGR00805 186 ATPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAW 259 (633)
T ss_pred CCcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHH
Confidence 99999999999999999988 999999999999999999999998876532 37
Q ss_pred hHHHHHHHHHHHHHHHHHHhcC
Q 035554 220 VLGFWICAGCDILAFSSLLSGT 241 (562)
Q Consensus 220 ~~~f~i~~~~~~~~~~~~~~~~ 241 (562)
+..|++.+++.++..+.++...
T Consensus 260 wl~Fli~g~l~~l~~v~l~~~p 281 (633)
T TIGR00805 260 WIGFLICGGVALLTSIPFFFFP 281 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHhCc
Confidence 8888887776666555444443
No 103
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.64 E-value=8.6e-20 Score=194.72 Aligned_cols=137 Identities=19% Similarity=0.205 Sum_probs=114.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHH
Q 035554 72 EASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIF 151 (562)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (562)
+.++..+...++..++.+++|+++|| +|||+++.++.++..++.++..++ +. ..+.+.+
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~-~GRk~~~~~~~~~~~i~~~~~~~~---~~-----------------~~~~~~~ 105 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADR-YGRKPALIISALLMIIGSILIAFA---PS-----------------YNNFWML 105 (451)
T ss_pred HHHHHHHHHHhhhccccccccccccc-cccccccccccccccccccccccc---cc-----------------ccccccc
Confidence 46788999999999999999999999 799999999999999999988887 31 0136779
Q ss_pred HHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccc---cchhHHHHHHHH
Q 035554 152 YISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENM---GYWVLGFWICAG 228 (562)
Q Consensus 152 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~---~~~~~~f~i~~~ 228 (562)
.++|++.|++.|...+..+.++.|..|++. |+...++.+....+|..++..++-.+.+. .+||..+++..+
T Consensus 106 ~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~ 179 (451)
T PF00083_consen 106 LIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAI 179 (451)
T ss_pred cccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999888 99999999999999998887665444332 359998887777
Q ss_pred HHHHHHH
Q 035554 229 CDILAFS 235 (562)
Q Consensus 229 ~~~~~~~ 235 (562)
..++..+
T Consensus 180 ~~l~~~~ 186 (451)
T PF00083_consen 180 PSLLVLL 186 (451)
T ss_pred ccccccc
Confidence 6544433
No 104
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.63 E-value=1e-12 Score=134.99 Aligned_cols=384 Identities=11% Similarity=0.055 Sum_probs=212.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH-
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFS- 112 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~- 112 (562)
.+..|.+-...++..+++-...++++.+++++.|+|..++|.+.++..+...+.+|+.|.++|| +|.||-++....+.
T Consensus 6 ~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-lg~kK~Ll~~i~~l~ 84 (412)
T PF01306_consen 6 NKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDK-LGLKKHLLWFIAILL 84 (412)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHH-CTTCSHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcch-hhhhHHHHHHHHHHH
Confidence 3677888888888888888889999999999999999999999999999999999999999999 79666554333222
Q ss_pred -HHHH-HHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHH----HHhcccchhhhhhhhhccCCCCCchhhh
Q 035554 113 -IIGL-LGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLF----ALGIGAPEPALATFGADQFDEEDPKEKK 186 (562)
Q Consensus 113 -~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 186 (562)
..+- +...+. |.+. .-++++.++. ++......|...++.-+.- |
T Consensus 85 ~l~~pff~~v~~---pll~-------------------~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--------r 134 (412)
T PF01306_consen 85 LLFGPFFIYVFG---PLLQ-------------------SNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--------R 134 (412)
T ss_dssp HTCHHHHHHTHH---HHHH-------------------TT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--------H
T ss_pred HHHHHHHHHHHH---HHHH-------------------HHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--------H
Confidence 1122 222222 2100 0022333332 3333333444444433321 1
Q ss_pred hhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCC---chh-HH-HHHH
Q 035554 187 SKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGN---PLS-RF-SQVI 261 (562)
Q Consensus 187 ~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~-~~~~ 261 (562)
..+.=+|=......+|.+++..++|++.+ .+-+..||+.....++..++.+..++..+++.+..+ ..+ +. .+..
T Consensus 135 ~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (412)
T PF01306_consen 135 RNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDV 213 (412)
T ss_dssp HHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------HHHH
T ss_pred HhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHH
Confidence 02223333455677889999999999876 456778887766555555444444432211110000 000 00 0000
Q ss_pred HHHHhhhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHH
Q 035554 262 VASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLF 341 (562)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 341 (562)
.. ..+.+.-|.-...++ .. .+.....+|+.+.|
T Consensus 214 ~~--------------------------------l~k~~~fw~~~l~v~-g~--------------~~~Y~vfdqqf~~y 246 (412)
T PF01306_consen 214 LS--------------------------------LFKMRNFWFFVLFVI-GV--------------AAIYDVFDQQFPIY 246 (412)
T ss_dssp HH--------------------------------HTTSHHHHHHHHHHH-HH--------------HHHHHHHHHHHHHH
T ss_pred HH--------------------------------HhcchhHHHHHHHHH-HH--------------HHHHHHHHHHHHHH
Confidence 00 000000011011000 00 01111223344555
Q ss_pred HHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 035554 342 VEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQ 421 (562)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~ 421 (562)
........ +..+..+. -....+.+.+.+.....++.-+ |.++...+.++.+++++=...+++.
T Consensus 247 ~~~~f~~~------~~g~~~~G-----~l~s~~v~~E~~~m~~~p~li~----rig~k~~Lllag~i~~iRi~~~~~~-- 309 (412)
T PF01306_consen 247 FASFFQSA------GQGNQMYG-----YLWSVQVFLEALMMFFSPWLIN----RIGAKNLLLLAGVIMAIRIIGSGFA-- 309 (412)
T ss_dssp HHHTSSSH------HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHhccc------ccChhHHh-----HHHHHHHHHHHHHHHHHHHHHH----hcChHhHHHHHHHHHHHHHHHHhhh--
Confidence 44321100 00111111 1122222333333222223222 1235556666666666666666554
Q ss_pred HHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHH-HHHHHHHHHHHHHHHHHhHh
Q 035554 422 RRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALS-MSSTAIGTYVCSMILSVVMV 500 (562)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~-~~~~~lg~~lg~~l~~~i~~ 500 (562)
.+++++.+.-.++++-..+...+..-++.+..|++..++...+. .+..++|..+.+.+.|..++
T Consensus 310 ---------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd 374 (412)
T PF01306_consen 310 ---------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYD 374 (412)
T ss_dssp ----------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred ---------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHh
Confidence 57778888889999999999999999999999999998888884 78889999999999887766
Q ss_pred hhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 035554 501 LTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARR 544 (562)
Q Consensus 501 ~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 544 (562)
.-+++..|++++++.+...++..+..++
T Consensus 375 ----------------~~G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 375 ----------------RIGFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred ----------------hcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence 3355667888888877777766666554
No 105
>PTZ00207 hypothetical protein; Provisional
Probab=99.63 E-value=5.8e-12 Score=136.01 Aligned_cols=176 Identities=11% Similarity=-0.008 Sum_probs=127.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 32 GGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
++|..+...+....+. ...|+.. .....+++++|++..+.+++.+... ...++.+++|+++|| +|||+++.++.++
T Consensus 25 ~Rw~~lva~~~~~~~~-g~~y~fs-v~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr-~G~R~vllig~ll 100 (591)
T PTZ00207 25 RRFALLVLGAFCSICT-SFMYAFN-LISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDY-LGPRPIFVLSMTV 100 (591)
T ss_pred chHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence 4444444444444333 2334443 3445678899999999998887743 344567789999999 7999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
+.++.++++++.+ .. ...+.+.+++.|++.|+|.+...+.....+.++|| ++ |+.+
T Consensus 101 ~~iG~ll~ala~~-~~----------------i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~a 156 (591)
T PTZ00207 101 FCLGTLLFALTFQ-EV----------------IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGAV 156 (591)
T ss_pred HHHHHHHHHHHhc-cc----------------ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHHH
Confidence 9999998887621 00 01258889999999999999888888889999996 56 8999
Q ss_pred HHHHHHHHhHHHHH-HhhhhhhcccccchhHHHHHHHHHHHHHHHHH
Q 035554 192 YSYFYIALNLGCLF-SETVLVYAENMGYWVLGFWICAGCDILAFSSL 237 (562)
Q Consensus 192 ~~~~~~~~~lg~~~-~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~ 237 (562)
.++...+.++|+++ +++..+++. .+|+..|++.++..++..++.
T Consensus 157 ~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~ll~ 201 (591)
T PTZ00207 157 VAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGILA 201 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999975 555555554 357766766665554444433
No 106
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.62 E-value=5.3e-13 Score=143.15 Aligned_cols=150 Identities=15% Similarity=0.130 Sum_probs=120.0
Q ss_pred HHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCC
Q 035554 56 VNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGK 135 (562)
Q Consensus 56 ~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (562)
.....++..++|-+ ....|+.+...++..+..++.|.|+|. ||||..++.+.++..+|.+.++-+.
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~vvG~Iv~atA~------------ 129 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLGVVGSIVCATAQ------------ 129 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHHHhHHHHhhcCC------------
Confidence 34556888899854 678889999999999999999999999 7999999999999999999988762
Q ss_pred CCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhccc
Q 035554 136 IGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAEN 215 (562)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~ 215 (562)
+...++.+..+.|+|.|... .....++|..|.+. |..+..+.....-+....+|.++..+..
T Consensus 130 -----------~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~ 191 (599)
T PF06609_consen 130 -----------NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAA 191 (599)
T ss_pred -----------cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhcc
Confidence 36679999999999977765 44566899998877 7777766665555555567777766666
Q ss_pred ccchhHHHHHHHHHHHHHHHHH
Q 035554 216 MGYWVLGFWICAGCDILAFSSL 237 (562)
Q Consensus 216 ~~~~~~~f~i~~~~~~~~~~~~ 237 (562)
..+|||.|++.++...++++..
T Consensus 192 ~~~WRw~~~~~~i~~~i~~vl~ 213 (599)
T PF06609_consen 192 HSGWRWIFYIFIIWSGIALVLI 213 (599)
T ss_pred CCCcchHHHHHHHHHHHHHHHH
Confidence 6799999999888766665543
No 107
>PRK11462 putative transporter; Provisional
Probab=99.61 E-value=2.7e-12 Score=137.20 Aligned_cols=178 Identities=12% Similarity=0.062 Sum_probs=127.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc---ccchHHHH-HHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSY---LGRYLTCV-TFQA 110 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grk~~i~-~~~~ 110 (562)
|+-+.--+..+..++.+..+..++..|+++.+|+++..+|.+..+.-+.-.+.-|+.|+++||. +||||..+ ++.+
T Consensus 9 ~~k~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i 88 (460)
T PRK11462 9 KEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGAL 88 (460)
T ss_pred hHHHhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHH
Confidence 3444444666667777788888999999999999999999999999999999999999999973 68876655 5666
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
..+++.+++... |.. +.......+.+.-++..++......+..++.+|+.++.+ + |++
T Consensus 89 ~~~i~~~llf~~---p~~--------------s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~--e---Rt~ 146 (460)
T PRK11462 89 PFGIVCVLAYST---PDL--------------SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT--Q---RIS 146 (460)
T ss_pred HHHHHHHHHHhC---CCC--------------CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH--H---HHH
Confidence 777776665433 320 112234556666667788888888899999999876533 2 889
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccc-------cchhHHHHHHHHHHHHHH
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENM-------GYWVLGFWICAGCDILAF 234 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~-------~~~~~~f~i~~~~~~~~~ 234 (562)
..++...+.++|..+++.+...+.+. .+|.....+.+++.+++.
T Consensus 147 l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~ 197 (460)
T PRK11462 147 LQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMML 197 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 99999999999888876665443322 246655555444444433
No 108
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.59 E-value=1.3e-14 Score=146.33 Aligned_cols=176 Identities=13% Similarity=0.145 Sum_probs=118.2
Q ss_pred CchHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHhh-------CCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccch
Q 035554 33 GWRCGTLLLVNQ---GLANLAFAGVEVNMVLFAKSVL-------RQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRY 102 (562)
Q Consensus 33 ~~~~~~~l~~~~---~~~~~~~~~~~~~~~~y~~~~l-------g~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk 102 (562)
.||.+-.+.++. +......+.+....+.+-.-.. ++++...+.+..+..++..+++++.||++|| +|||
T Consensus 36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~-~GRK 114 (538)
T KOG0252|consen 36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDK-FGRK 114 (538)
T ss_pred hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hcch
Confidence 455555444443 3344555555544444332221 2556678888999999999999999999999 7999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCc
Q 035554 103 LTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDP 182 (562)
Q Consensus 103 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 182 (562)
+++...+++++++++.+.+. - |.++.....+++...|+++|+|.|+=.|...+..+|..-.+.
T Consensus 115 ~vYG~~liImIi~t~~~~~s----~------------~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~- 177 (538)
T KOG0252|consen 115 KVYGKELIIMIICSALSGLS----V------------GTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT- 177 (538)
T ss_pred hhhhHHHHHHHHHHHHhccC----C------------CCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc-
Confidence 99999999999999855543 1 122222457788899999999999999999999998655444
Q ss_pred hhhhhhhhhHHH----HHHHHhHHHHHHhhhhhhcccc-----------cchhHHHHHHHHHHH
Q 035554 183 KEKKSKTSFYSY----FYIALNLGCLFSETVLVYAENM-----------GYWVLGFWICAGCDI 231 (562)
Q Consensus 183 ~~~~~r~~~~~~----~~~~~~lg~~~~~~~~~~l~~~-----------~~~~~~f~i~~~~~~ 231 (562)
|+...+. ..++.-.|+.++-++..-.... .-||..|.+.++..+
T Consensus 178 -----RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~ 236 (538)
T KOG0252|consen 178 -----RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPAL 236 (538)
T ss_pred -----ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 6665544 4555555555555444332221 238888777665443
No 109
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.58 E-value=7.9e-13 Score=140.08 Aligned_cols=150 Identities=9% Similarity=0.010 Sum_probs=124.5
Q ss_pred HhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCC
Q 035554 64 SVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPH 143 (562)
Q Consensus 64 ~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (562)
++++....+.+.+.+++.+++.++.+++|+|.|| ++-.+.+....+++.+-.++.+..+
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r-~~ls~~l~~~~~~w~~~~~~~~~~~-------------------- 132 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDR-FPLSKGLSVSGILWGLFGFLTAAVH-------------------- 132 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 4667777889999999999999999999999999 7977777766666655554444442
Q ss_pred CCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhc------cccc
Q 035554 144 SPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYA------ENMG 217 (562)
Q Consensus 144 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l------~~~~ 217 (562)
+++.+++.|++.|+.++..+|....+++.++.+++ |+.-+++++...++|.++|+++...+ ....
T Consensus 133 ---s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~ 203 (495)
T KOG2533|consen 133 ---SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLA 203 (495)
T ss_pred ---hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcC
Confidence 37779999999999999999999999999999988 99999999999999999999888775 2346
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcCcc
Q 035554 218 YWVLGFWICAGCDILAFSSLLSGTLR 243 (562)
Q Consensus 218 ~~~~~f~i~~~~~~~~~~~~~~~~~~ 243 (562)
||++.|++.+++.++..++.++..|.
T Consensus 204 gW~~~FiI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 204 GWRWLFIIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred CceeehhHHHHHHHHHHheEEEEecC
Confidence 99999999998777666665554443
No 110
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.57 E-value=9.7e-13 Score=140.70 Aligned_cols=416 Identities=15% Similarity=0.121 Sum_probs=239.1
Q ss_pred HHHHHHHHHHHHHHHHhhHH---HHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 37 GTLLLVNQGLANLAFAGVEV---NMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~---~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
-|.+.++.|+.++..+++.. .+-..++++++.+..+++|+.++......+..|+.+.+.|| +|.|.+.+.|.++..
T Consensus 44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~r-fg~R~v~i~G~~v~~ 122 (509)
T KOG2504|consen 44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNR-FGCRTVMIAGGLVAA 122 (509)
T ss_pred eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhh-cCchHHHHHHHHHHH
Confidence 35556666666666665443 33455677899999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHH-HHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISI-YLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 192 (562)
+|.++.+++. +.+.+++.. ++.|+|.|+...+...++..+|+ ++ |+.+.
T Consensus 123 ~g~~lssF~~-----------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kk------R~lA~ 172 (509)
T KOG2504|consen 123 LGLLLSSFAT-----------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KK------RALAT 172 (509)
T ss_pred HHHHHHHHHh-----------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HH------HHHHH
Confidence 9999999983 255555544 45789999988888888887764 33 78888
Q ss_pred HHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhc---
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKIN--- 269 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 269 (562)
++-..+..+|..+-|.+..++.+.+|||..+++-..+.+-..+.....+|.....+|+ +. ++... .....+
T Consensus 173 Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~-~~-~~~~~----~~~~~~~~~ 246 (509)
T KOG2504|consen 173 GIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN-EE-KDLRN----SAASVESTP 246 (509)
T ss_pred hhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch-hh-hhhcc----ccccccccc
Confidence 8888888888888888989999999999999887777665555555555433222222 00 00000 000000
Q ss_pred ----ccCCCCCCCccc---cchhhhhccCcccc--cccCchhHHHHHHhhhcccccccCCCCCccceeehh-hhhhhhhh
Q 035554 270 ----LEMPTNGGGLFE---VHVREYEANGTRRI--LHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTV-TQVEEMLS 339 (562)
Q Consensus 270 ----~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 339 (562)
...++....... ...+.......+.. ........+|...+. +..+..+.+... ..+....+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~---------~~~fl~~~~~~~~~~~g~~~p 317 (509)
T KOG2504|consen 247 KPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLK---------DPKFLLLALSNLFAYLGFNVP 317 (509)
T ss_pred cccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHc---------CchHHHHHHHHHHHHHHHHHH
Confidence 000000000000 00000000000000 000000011111110 000000000000 11111122
Q ss_pred HHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 035554 340 LFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIV 419 (562)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~ 419 (562)
.+..-....+..+ .. ....+.+.++-..-...++..+....... .+......++++..+++.+...+.
T Consensus 318 ~~~l~~~~~~~g~-----~~--~~aa~l~Siigi~~i~gRi~~G~laD~~~-----~~~~~~~~~~ll~~gl~~~~~p~~ 385 (509)
T KOG2504|consen 318 FVYLPSYAKSLGL-----SS--NDAAFLLSIIGVSDIIGRIILGLLADKPG-----IRALVLFLLTLLIAGLARLFLPFA 385 (509)
T ss_pred HHHHHHHHhhcCC-----Ch--hhhHHHHHHHHHhhhhhhhhhhhhcCccc-----cchHHHHHHHHHHHHHHHHHHHHh
Confidence 1111111111111 10 01111111222222222222222222111 223444456666666666554443
Q ss_pred HHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 035554 420 EQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVM 499 (562)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~ 499 (562)
.+.+.++..-+++|+..+...........+.++.+.-+.+.|+..++.+++..+|+++.+.+.
T Consensus 386 -----------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~ 448 (509)
T KOG2504|consen 386 -----------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLY 448 (509)
T ss_pred -----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeee
Confidence 455667777889999999888887789999999999999999999999999999999988655
Q ss_pred hhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 035554 500 VLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCA 542 (562)
Q Consensus 500 ~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~ 542 (562)
+.+ ++|+..|...++..+++....++..
T Consensus 449 d~t---------------g~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 449 DIT---------------GNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred ecc---------------CCeeeehhhcChHHHHHHHHHHHhH
Confidence 432 2245667777777777776655554
No 111
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.56 E-value=3.3e-14 Score=142.70 Aligned_cols=180 Identities=17% Similarity=0.118 Sum_probs=146.4
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcc-cchHHHHHHHH-H
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYL-GRYLTCVTFQA-F 111 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grk~~i~~~~~-~ 111 (562)
.|.+|++.++.++.++..|++..|.|+|+.++.|+|..++++.++.|..++..++++.||+|||++ |||....+.+. .
T Consensus 251 Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~ 330 (448)
T COG2271 251 NKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLL 330 (448)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 379999999999999999999999999999999999999999999999999999999999999998 77766654443 3
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
..++.+....+ |+ .+..+..++.+.+|+..-+..-.+.....|..|.+- .|++
T Consensus 331 i~~~~~~~w~~---~~------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA 383 (448)
T COG2271 331 ITASLVLYWLA---PN------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTA 383 (448)
T ss_pred HHHHHHHHHcC---CC------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccch
Confidence 44444444443 32 245666677777887777766666667788877666 7899
Q ss_pred HHHHHHHHhH-HHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 192 YSYFYIALNL-GCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 192 ~~~~~~~~~l-g~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
.+...++..+ |+.++....+++.+.+||...|.+..++.+++.+++...
T Consensus 384 ~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~ 433 (448)
T COG2271 384 TGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV 433 (448)
T ss_pred hchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999998999999988777766666655544
No 112
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.56 E-value=9.3e-14 Score=149.91 Aligned_cols=179 Identities=9% Similarity=0.059 Sum_probs=131.2
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 035554 33 GWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFS 112 (562)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~ 112 (562)
+++.....+...++.++.+|++..++|.|+++.+|++..+.+.......++..++.+++|+++|| +|||+++.++.++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~ 326 (490)
T PRK10642 248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDR-FGRRPFVILGSVAL 326 (490)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHH
Confidence 44555555555566778999999999999999999999888888888889999999999999999 79999998887654
Q ss_pred HHHHHH-HHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 113 IIGLLG-LSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 113 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
.++... +..... .....+++++++.+++.+...+....+..+.+|++. |+++
T Consensus 327 ~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~~ 379 (490)
T PRK10642 327 FVLAIPAFILINS---------------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYSA 379 (490)
T ss_pred HHHHHHHHHHHhC---------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chHH
Confidence 433322 222110 124556778888888777777777888889999988 9999
Q ss_pred HHHHHHHHhHHHHHHhhhhhhccccc-chhHHHHHHHHHHHHHHHHHHh
Q 035554 192 YSYFYIALNLGCLFSETVLVYAENMG-YWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~~~~-~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
.++.+....+++.++|.+.+++.+.. +|+.++++..+..+++.+..++
T Consensus 380 ~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (490)
T PRK10642 380 LAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT 428 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 99855556677788999999887654 4666665544444444444433
No 113
>PRK09952 shikimate transporter; Provisional
Probab=99.53 E-value=2.2e-13 Score=144.86 Aligned_cols=184 Identities=13% Similarity=-0.021 Sum_probs=134.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 035554 31 TGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQA 110 (562)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~ 110 (562)
+++++.....+...++..+++|....+++.|+++.+|++......+.....+...++.++.|+++|| +||||++..+.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr-~grr~~~~~~~~ 324 (438)
T PRK09952 246 LRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADR-FGRRRVYITGAL 324 (438)
T ss_pred HHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHH
Confidence 3455555555556777888999999999999999999998766655556667778888999999999 799999988876
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
+..++.+.+..... . ......+++..++.+++.+...+...++.+|.+|.+. |++
T Consensus 325 ~~~~~~~~~~~~~~--~-----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~t 379 (438)
T PRK09952 325 IGTLSAFPFFMALE--A-----------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYS 379 (438)
T ss_pred HHHHHHHHHHHHHH--c-----------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHH
Confidence 65554433322210 0 0123344445566678888878888999999999887 888
Q ss_pred hHHH-HHHHHhHHHHHHhhhhhhccccc--chhHHHHHHHHHHHHHHHHHHhc
Q 035554 191 FYSY-FYIALNLGCLFSETVLVYAENMG--YWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 191 ~~~~-~~~~~~lg~~~~~~~~~~l~~~~--~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
+.++ +..+..+|+.++|.+.+++.+.. +|...+.+..++.+++.+..+..
T Consensus 380 g~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 380 GAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 8888 44455689999999999987643 47888877777666666655443
No 114
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.50 E-value=8e-11 Score=116.30 Aligned_cols=161 Identities=14% Similarity=0.080 Sum_probs=136.0
Q ss_pred HHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhccc
Q 035554 47 ANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSF 126 (562)
Q Consensus 47 ~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~ 126 (562)
.|...-++-+.+ .-+++++|.|.+.+|.+.+.-.+...+..+++.+|+.| +|.++.+..++++.++|..+=...
T Consensus 24 LR~~itsvgPLL-~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli~~G~~iR~~~---- 97 (395)
T COG2807 24 LRPAITSVGPLL-DEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLIAAGILIRSLG---- 97 (395)
T ss_pred cchhhhhhhhhH-HHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc----
Confidence 445555555544 34788999999999999999999999999999999999 799999999999998888765443
Q ss_pred ccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHH
Q 035554 127 LLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFS 206 (562)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~ 206 (562)
+...++.+-.+.|.|.+......++++.+.||.+. +..+++|....++|+.++
T Consensus 98 --------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-------~~mtglYs~sl~~~aaLa 150 (395)
T COG2807 98 --------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-------GLMTGLYSTSLGAGAALA 150 (395)
T ss_pred --------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-------hhHHhHHHHHHHHHHHHH
Confidence 36678889999999999999999999999998544 688999999999999999
Q ss_pred hhhhhhccccc-chhHHHHHHHHHHHHHHHHHHhc
Q 035554 207 ETVLVYAENMG-YWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 207 ~~~~~~l~~~~-~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
+.+...+.+.. ||+.....-++..++++++++..
T Consensus 151 a~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq 185 (395)
T COG2807 151 AALAVPLAQHSGGWRGALGFWALLALLALLIWLPQ 185 (395)
T ss_pred hhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhh
Confidence 99998888776 79998888777777777777654
No 115
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.50 E-value=1.7e-10 Score=119.94 Aligned_cols=371 Identities=13% Similarity=0.099 Sum_probs=219.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc---ccchHHH-HHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSY---LGRYLTC-VTFQA 110 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grk~~i-~~~~~ 110 (562)
|+-+.--...+..++.+-.+..++..|.++.+|+++..+|.++.+.-+.=++.-|+.|.++||. +||+|-. +.+.+
T Consensus 12 ~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~i 91 (467)
T COG2211 12 KEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAI 91 (467)
T ss_pred HHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhH
Confidence 4445555666777777778888999999999999999999999999999999999999999975 6766554 46667
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
..++...++..+ |. -+........++--++.++++.....+..++.+++.++.+ | |.+
T Consensus 92 p~~i~~~l~F~~---p~--------------~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~--E---R~~ 149 (467)
T COG2211 92 PFAIVAVLLFIT---PD--------------FSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ--E---RAS 149 (467)
T ss_pred HHHHHHHHHHcC---CC--------------cccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH--H---HHH
Confidence 777777777665 31 0112345666677778889999999999999999876533 3 889
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhccc-------ccchhHHHHHHHHHHHHHHHHH-HhcCcceeecCCCCC-chhHHHHHH
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAEN-------MGYWVLGFWICAGCDILAFSSL-LSGTLRYRHFKPSGN-PLSRFSQVI 261 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~-------~~~~~~~f~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~ 261 (562)
..++...+.++|..+...+.+.+.. ..||+..-.+.+++..+..+.. .-.++|...+.|.++ ...+....+
T Consensus 150 l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~ 229 (467)
T COG2211 150 LTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSF 229 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHHH
Confidence 9999999999997776555544432 2356655554444444333332 223333332222221 111111111
Q ss_pred HHHHhhhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHH
Q 035554 262 VASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLF 341 (562)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 341 (562)
....+++ .++.+-...++. ....++.+....|
T Consensus 230 ~~~~~Nr-------------------------------p~~~~l~~~l~~-----------------~~~~~i~~s~~~y 261 (467)
T COG2211 230 LLIFKNR-------------------------------PLLLLLLMNLLL-----------------FIAFNIRGSIMVY 261 (467)
T ss_pred HHHHccc-------------------------------hHHHHHHHHHHH-----------------HHHHHHHhhhhhe
Confidence 1111110 000000000000 0000000011111
Q ss_pred HHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHH-hhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 035554 342 VEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVP-LYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVE 420 (562)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~ 420 (562)
+.++ .+..................+...+..| +.+|+++ .+....+.++.+++.....+..
T Consensus 262 y~~y----------~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gk--------k~~~~~~~~~~~i~~~~~~f~~ 323 (467)
T COG2211 262 YVTY----------VLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGK--------KKLFLIGLLLLAVGYLLLYFTP 323 (467)
T ss_pred eEEE----------EcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhch--------HHHHHHHHHHHHHHHHHHHhhc
Confidence 1111 0110001110111111111222122223 3344433 2355667777777777665651
Q ss_pred HHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCC-------chhHHHHHHHHHHHHHHHHHHHHH
Q 035554 421 QRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIP-------NGLKSLGIALSMSSTAIGTYVCSM 493 (562)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~gl~~~~~~lg~~lg~~ 493 (562)
..+.++.+...++.++|.+...+..++...+.+. .+..|...|.+.++.=+|..++..
T Consensus 324 ---------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~ 388 (467)
T COG2211 324 ---------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGF 388 (467)
T ss_pred ---------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 2455666777799999999999888888887654 466788899999999999999999
Q ss_pred HHHHhHhhhhcCCCCCCCCCC
Q 035554 494 ILSVVMVLTTKNGKPGWVPPN 514 (562)
Q Consensus 494 l~~~i~~~~~~~~~~~w~~~~ 514 (562)
+.+.+.... |+.++.
T Consensus 389 ~~g~~L~~~------Gyv~~~ 403 (467)
T COG2211 389 IPGWILGAI------GYVPNV 403 (467)
T ss_pred HHHHHHHHc------CCCCCc
Confidence 888877654 566554
No 116
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.49 E-value=1.9e-12 Score=135.69 Aligned_cols=177 Identities=18% Similarity=0.112 Sum_probs=133.6
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 035554 33 GWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFS 112 (562)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~ 112 (562)
++|..+..+....+....++....++|.|+++++|++..+.+.+.+...++..++.+++|+++|| +|||+.+..+.+..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr-~g~~~~~~~~~~~~ 292 (393)
T PRK15011 214 NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKR-LGKRFLMRVAAVAG 292 (393)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHH
Confidence 44444444444455555666667789999999999999999998888778888899999999999 79999888776555
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhH
Q 035554 113 IIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192 (562)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 192 (562)
.+....+... + +.+.+++.+++.+++.|...+....+..|.+| ++ |+++.
T Consensus 293 ~~~~~~~~~~---~--------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p-~~------~g~~~ 342 (393)
T PRK15011 293 VCFYAGMLMA---H--------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMP-GQ------AGSAT 342 (393)
T ss_pred HHHHHHHHHH---h--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CC------cchHH
Confidence 5444333322 1 24556667777777766666667777888876 34 67899
Q ss_pred HHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
++++...++|..++|.++|.+.+..||+..|++..++.+++.++.+..
T Consensus 343 ~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK15011 343 TLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI 390 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 998888999999999999999988899999998887777776665543
No 117
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.46 E-value=6e-13 Score=138.47 Aligned_cols=173 Identities=14% Similarity=0.061 Sum_probs=133.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 32 GGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
.+++.++......++....++.+..++|.|+++++|.+..+.+.......++..++.++.|+++|| +|||+.+..+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~ 294 (394)
T TIGR00883 216 KHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDR-IGRRPVLIIFTVL 294 (394)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHH
Confidence 333457777777888888899999999999999999999999999999999999999999999999 7999988766554
Q ss_pred HHHHH-HHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 112 SIIGL-LGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 112 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
..+.. ....... . ....+.+++...+.+++.+...+...+++.|.+|+++ |++
T Consensus 295 ~~~~~~~~~~~~~--~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~~ 348 (394)
T TIGR00883 295 AALLAVPLLMALL--D------------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RYT 348 (394)
T ss_pred HHHHHHHHHHHHh--c------------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------eee
Confidence 43332 2221110 0 0124556667777888888888999999999999888 888
Q ss_pred hHHH-HHHHHhHHHHHHhhhhhhcccccc-hhHHHHHHHHHHH
Q 035554 191 FYSY-FYIALNLGCLFSETVLVYAENMGY-WVLGFWICAGCDI 231 (562)
Q Consensus 191 ~~~~-~~~~~~lg~~~~~~~~~~l~~~~~-~~~~f~i~~~~~~ 231 (562)
+.++ ++....+|..++|.++|++.+..| |+..++...++.+
T Consensus 349 ~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 349 GASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred EeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 8888 456667899999999999988777 7776665554443
No 118
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.45 E-value=2.7e-12 Score=137.70 Aligned_cols=176 Identities=15% Similarity=0.088 Sum_probs=134.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+.+|.+.+..++....++++..++|.|+++++|+|..++++......++..++.+++|+++|| +|||+.+.....+..+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~g~r~~~~~~~~~~~~ 336 (467)
T PRK09556 258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDL-ANGRRALVACIALALI 336 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHHH
Confidence 568888888888888899999999999999999999999999999999999999999999999 7999887765544443
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+..+..+.. . .+....++.+++.|+..............|.+|++. |+++.++
T Consensus 337 ~~~~~~~~~--~-------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~gi 389 (467)
T PRK09556 337 IFTLGVYQH--A-------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVANGI 389 (467)
T ss_pred HHHHHHHHh--c-------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHHHH
Confidence 332222220 0 124445566666665443333333456679999888 9999999
Q ss_pred HHHHHhH-HHHHHhhhhhhccc------------ccchhHHHHHHHHHHHHHHHHHH
Q 035554 195 FYIALNL-GCLFSETVLVYAEN------------MGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 195 ~~~~~~l-g~~~~~~~~~~l~~------------~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
.+...++ |+.++|.+.|++.+ ..+|+..|++..++.+++.+..+
T Consensus 390 ~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 390 KGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 9999997 77999999999988 56899999888777776655544
No 119
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.44 E-value=1.8e-12 Score=134.06 Aligned_cols=171 Identities=14% Similarity=0.091 Sum_probs=136.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+..+.+....++..+.......+.+.|. +++|.+..+.+.+.+.+.++..++.++.|+++|| +|||+.+.++.++..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~ 282 (377)
T TIGR00890 205 PQFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDK-IGRQKTMSIVFGISAV 282 (377)
T ss_pred ccHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHH
Confidence 4555555566666666666666677775 4688999899999999999999999999999999 7999999999888888
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.+++.+. +. .....++...++.+++.+...+..+++..|.+|+++ |++..++
T Consensus 283 ~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~ 335 (377)
T TIGR00890 283 GMAAMLFI---PM------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGF 335 (377)
T ss_pred HHHHHHHc---cc------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHH
Confidence 87766554 21 112334455667788888887888889999999888 9999999
Q ss_pred HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHH
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAF 234 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~ 234 (562)
++...++|..++|.+.+++.+..||+..|.+.+++.+++.
T Consensus 336 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 336 LYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 9999999999999999999988999999988877665543
No 120
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.44 E-value=1.6e-09 Score=115.28 Aligned_cols=388 Identities=13% Similarity=0.017 Sum_probs=206.3
Q ss_pred HHHHhhHHHHHHHHHHhhCCC-----------------------------hhhhhhHHHHHHHHHHHHHHHHHHHhhhcc
Q 035554 49 LAFAGVEVNMVLFAKSVLRQT-----------------------------NAEASNTFSRWMGSLYLSSLMGAFLSDSYL 99 (562)
Q Consensus 49 ~~~~~~~~~~~~y~~~~lg~s-----------------------------~~~~~~~~~~~~~~~~~~~~~~G~laDr~~ 99 (562)
+....+..++|.|+++...-+ .+-.+...++..+...+..|+.|.++|+ -
T Consensus 19 f~~~i~t~~~p~~~~~~a~~~g~~~~~~~~~c~~~~~~c~~~~~g~~~~~~s~~~~~~sis~l~~all~P~lGa~aD~-~ 97 (477)
T PF11700_consen 19 FATVIVTFFFPPYFQSLAREAGVLPGDPTQPCSDSDDDCVVPFFGSWIDTSSLWLYANSISGLLQALLAPFLGAIADY-G 97 (477)
T ss_pred chhhhHHHHHHHHHHHHHHhcccccccccCcccccCCccccccccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHcc-c
Confidence 345556778889988764211 1223566778888888999999999998 6
Q ss_pred cchHHHHHHH-HHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCC
Q 035554 100 GRYLTCVTFQ-AFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFD 178 (562)
Q Consensus 100 Grk~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~ 178 (562)
|+||-++... .+.+++..++.+.. |. +.+...+..++..++.+.......+++.|+.+
T Consensus 98 ~~Rk~~l~~~~~~~~~~~~~l~~v~--~~-------------------~~~~~~~l~iia~v~~~~~~vfyna~LP~la~ 156 (477)
T PF11700_consen 98 GRRKRFLLIFTLLGVLATALLWFVS--PG-------------------QWWLALVLFIIANVGYEASNVFYNAYLPDLAR 156 (477)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhC--cc-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcC
Confidence 8777666544 45555666665541 22 23444444445567777778889999999988
Q ss_pred CCCchhh--------------------hhhhhhHHHHHHHHhHHHHHHhhhhhhccc--------ccchhHHHHHHHHHH
Q 035554 179 EEDPKEK--------------------KSKTSFYSYFYIALNLGCLFSETVLVYAEN--------MGYWVLGFWICAGCD 230 (562)
Q Consensus 179 ~~~~~~~--------------------~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~--------~~~~~~~f~i~~~~~ 230 (562)
+++...+ ..|++..+.-+...++|+.+...+.-.+.. ..+.|..+.+.++..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww 236 (477)
T PF11700_consen 157 PEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWW 236 (477)
T ss_pred CChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHH
Confidence 7762000 001677777777778888877665543321 123577777777665
Q ss_pred HHHHHH-HHhcCccee-ecCCCC-CchhHHHHHHHHHHhhhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHH
Q 035554 231 ILAFSS-LLSGTLRYR-HFKPSG-NPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRA 307 (562)
Q Consensus 231 ~~~~~~-~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (562)
++..+- ++..+++.. ...|.. +..+.-.+.+...+|+.+. +++...++-..
T Consensus 237 ~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~--------------------------~~~~~~fLia~ 290 (477)
T PF11700_consen 237 LVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRK--------------------------LRQLFLFLIAY 290 (477)
T ss_pred HHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHh--------------------------ChHHHHHHHHH
Confidence 444443 333333322 111111 2223333333333332110 00111111000
Q ss_pred HhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhh
Q 035554 308 AIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLK 387 (562)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r 387 (562)
.+.. ..+..+......|..+..+++.. .+..+ .+..-+...+...+...+.+|
T Consensus 291 ~l~~-----------------dg~~ti~~~~~i~a~~~lg~s~~---------~l~~~-~l~~~i~a~~Ga~~~g~l~~r 343 (477)
T PF11700_consen 291 FLYS-----------------DGVNTIISFAGIYATEVLGMSTT---------QLIVF-GLVVQIVAIIGALLFGWLQDR 343 (477)
T ss_pred HHHH-----------------HHHHHHHHHHHHHHHHhcCcCHH---------HHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00001111333444433333211 11111 111111112222222223334
Q ss_pred hccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhh
Q 035554 388 VAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQ 467 (562)
Q Consensus 388 ~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~ 467 (562)
++. .+.+.+.+.+++..+..+...+.... .. ....+.+...+.-++.|+..+...+..-++..++
T Consensus 344 ~g~------k~~~~l~~~l~~~~~i~~~g~~G~~~------~~---~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~L 408 (477)
T PF11700_consen 344 FGP------KTKRTLLISLILWIIIPLYGLFGFWP------SF---FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRL 408 (477)
T ss_pred hCC------chhHHHHHHHHHHHHHHHHHHHHhhh------cc---cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 432 11133334333332222222221000 00 0113444555667789999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 035554 468 IPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVC 541 (562)
Q Consensus 468 ~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~ 541 (562)
+|+++.+...|++.+..-..+++||.+.+.+.+.+. +....+..+.++.++++++.+.+
T Consensus 409 iP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg---------------~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 409 IPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG---------------SQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------CchhHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999998877552 11344555566666666655444
No 121
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.44 E-value=1.5e-12 Score=137.57 Aligned_cols=178 Identities=11% Similarity=-0.008 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCC--------hhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQT--------NAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVT 107 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s--------~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~ 107 (562)
.++.+++..++..........+++.|+.+ .|.+ ....+...+...++..++.++.|+++|| +|||+++.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr-~g~r~~l~~ 286 (418)
T TIGR00889 209 RMAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKR-FGIKKVMLL 286 (418)
T ss_pred CeeeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHH
Confidence 44455555555555555566777888764 4544 3567888999999999999999999999 799999999
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhh
Q 035554 108 FQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKS 187 (562)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 187 (562)
+.++..++..++.... ++ ....+.+++..++.|++.+...+....++.|++|+++
T Consensus 287 ~~~~~~v~~~l~~~~~--~~-----------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------ 341 (418)
T TIGR00889 287 SLVAWALRFGFFAYGD--PE-----------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------ 341 (418)
T ss_pred HHHHHHHHHHHHHHcC--cc-----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------
Confidence 9998888776665531 10 0124567778889999998888998999999999888
Q ss_pred hhhhHHHHH-HHHhHHHHHHhhhhhhcccc------cchhHHHHHHHHHHHHHHHHHHhc
Q 035554 188 KTSFYSYFY-IALNLGCLFSETVLVYAENM------GYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 188 r~~~~~~~~-~~~~lg~~~~~~~~~~l~~~------~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
|++++++.+ ....+|..++|.++|++.+. +||+..|.+.+++.+++.++++..
T Consensus 342 ~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~ 401 (418)
T TIGR00889 342 RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIF 401 (418)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987 56789999999999999876 469999988877766655554443
No 122
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.42 E-value=4.1e-12 Score=133.56 Aligned_cols=172 Identities=13% Similarity=-0.043 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIG 115 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~ 115 (562)
..+.+....++....++....++|.|+++ .|++..+.+.....+.++..++.++.|+++|| +|||+.+..+.+...++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~ 298 (406)
T PRK11551 221 ATLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDR-LRPRRVVLLIYAGILAS 298 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHH
Confidence 34444455556667777888889999875 79999999999999999999999999999999 79999988876666655
Q ss_pred HHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHH
Q 035554 116 LLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYF 195 (562)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 195 (562)
.+++... + +.+.+.+..++.|++.+...+...++..|.+|+++ |+++.++.
T Consensus 299 ~~~~~~~---~--------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~ 349 (406)
T PRK11551 299 LAALAAA---P--------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAA 349 (406)
T ss_pred HHHHHhc---C--------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHH
Confidence 5544433 1 24445566667788777778888999999999888 99999999
Q ss_pred HHHHhHHHHHHhhhhhhccccc-chhHHHHHHHHHHHHHHHHHH
Q 035554 196 YIALNLGCLFSETVLVYAENMG-YWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 196 ~~~~~lg~~~~~~~~~~l~~~~-~~~~~f~i~~~~~~~~~~~~~ 238 (562)
+...++|..++|.+.|++.+.. +|...+++...+.+++.++.+
T Consensus 350 ~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 350 VAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988754 456666666655555544433
No 123
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.42 E-value=6e-12 Score=132.07 Aligned_cols=175 Identities=15% Similarity=0.092 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Q 035554 37 GTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGL 116 (562)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~ 116 (562)
.+.......+..+++..+..+++.|+.+ .|+ .+.+...+.+.++..++.++.|+++|| +||||.+..+..+..++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~ 293 (399)
T PRK05122 218 VWPYGMGLALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINR-LGGLRVAIVSLLVEILGL 293 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHH
Confidence 3333333444556677777888888865 455 345666777888889999999999999 799999998888877777
Q ss_pred HHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHH
Q 035554 117 LGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFY 196 (562)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 196 (562)
+++... + +.+.+++..++.|++.+...|.......|.+|+++ |+++.++++
T Consensus 294 ~~~~~~---~--------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~ 344 (399)
T PRK05122 294 LLLWLA---P--------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYS 344 (399)
T ss_pred HHHHHh---c--------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHH
Confidence 666554 1 25556677888999998888888888888888777 899999999
Q ss_pred HHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcce
Q 035554 197 IALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRY 244 (562)
Q Consensus 197 ~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~ 244 (562)
...++|..+++.+.|++.+..||+..|++.+++.+++.+..+...++.
T Consensus 345 ~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (399)
T PRK05122 345 VFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRA 392 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999888999999988887777766655544443
No 124
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.42 E-value=7.4e-12 Score=129.88 Aligned_cols=173 Identities=16% Similarity=0.045 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIG 115 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~ 115 (562)
..+.+....++...+......+++.|+++++|.+..+.+.+.........++.+++|+++|| +|||+++.++.++..+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~ 278 (375)
T TIGR00899 200 DTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKR-FGKRRLMLLAALAGVAF 278 (375)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchhHHHHHHHHHHHH
Confidence 34444444445555555566778999999999999999988888777778888999999999 79999998877665555
Q ss_pred HHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHH
Q 035554 116 LLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYF 195 (562)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 195 (562)
....... + +.+.+++.+++.+++.+...+....+..|..|+ + ++++.+++
T Consensus 279 ~~~~~~~---~--------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~ 328 (375)
T TIGR00899 279 YTGLAAD---N--------------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLY 328 (375)
T ss_pred HHHHHHH---H--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHH
Confidence 4443332 1 245566677788888888888888888887764 3 55899999
Q ss_pred HHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 035554 196 YIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 196 ~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
+...++|..++|.+.|++.+..||+..|++.+++.+++.++...
T Consensus 329 ~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 329 TNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence 99999999999999999998889999999888877777665543
No 125
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.42 E-value=3.7e-11 Score=118.07 Aligned_cols=179 Identities=11% Similarity=0.044 Sum_probs=122.2
Q ss_pred HHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcC
Q 035554 61 FAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLC 140 (562)
Q Consensus 61 y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (562)
-++..-|.+..+..++......+..+++-..|.++|+ +||||...+..+...+...+-..+ |
T Consensus 103 ~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~-~grr~~f~~T~l~t~v~~~is~~s---p-------------- 164 (528)
T KOG0253|consen 103 ALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADT-IGRRKGFNLTFLVTGVFGVISGAS---P-------------- 164 (528)
T ss_pred HHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhh-hhcchhhhhhHHHHHHHHHhhcCC---C--------------
Confidence 3455667788889999999999999999999999999 799999988876655444433222 3
Q ss_pred CCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchh
Q 035554 141 DPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWV 220 (562)
Q Consensus 141 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~ 220 (562)
++..+.+.|.+.++|.|+ .|...++-.|..|..+ |....-+. ....+|.++...+.-.+..+.|||
T Consensus 165 ------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~law~vm~~~gwr 230 (528)
T KOG0253|consen 165 ------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWR 230 (528)
T ss_pred ------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHH
Confidence 477899999999999999 7999999999988877 55555444 566788888877776667778999
Q ss_pred HHHHHHHHHHHHHHHHHHhc--CcceeecCCCCCchhHHHHHHHHHHhhhcccCCC
Q 035554 221 LGFWICAGCDILAFSSLLSG--TLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPT 274 (562)
Q Consensus 221 ~~f~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (562)
+..........+...+.++. .+|+.. ..+++.+ ....+....+.++.+.|.
T Consensus 231 ~~l~~~~~pl~~~a~f~~w~~ESpRf~~--~~G~~~k-AletL~kiArmNg~qlpl 283 (528)
T KOG0253|consen 231 YLLFTSSTPLMFAARFLVWVYESPRFYL--AKGDDYK-ALETLHKIARMNGKQLPL 283 (528)
T ss_pred HHHHHHHhHHHHHHHHHhhcccCcchhh--hcCChHH-HHHHHHHHHHhcCCCCCc
Confidence 87665554333333333332 233322 2233222 233444444555555554
No 126
>PRK03699 putative transporter; Provisional
Probab=99.41 E-value=8e-12 Score=130.99 Aligned_cols=172 Identities=10% Similarity=0.033 Sum_probs=135.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+.++.+.+..++...+++++..++|.|+++++|+|..+.+.+.+.+.++..++.+++|+++|| +|||+.+.....+..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~l~~~~~~~~~ 283 (394)
T PRK03699 205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRF-FDLQRILTVLAGLALV 283 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHH
Confidence 456667777777778888999999999999999999999999999999999999999999999 7999998877766665
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
...+.... + +...+.+..++.|++.+...+...+...+..|+ + +++..++
T Consensus 284 ~~~~~~~~---~--------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~------~~~~~g~ 333 (394)
T PRK03699 284 LMYLFVNT---D--------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKV-A------SPKLVNF 333 (394)
T ss_pred HHHHHHHc---C--------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-C------CHHHHHH
Confidence 55444333 1 133445566677887777778877777776653 2 3456777
Q ss_pred HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHH
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSL 237 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~ 237 (562)
.+...++|+.++|.+.|++.+..|++..|++..++.+++.+..
T Consensus 334 ~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 376 (394)
T PRK03699 334 ILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMC 376 (394)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHH
Confidence 7788899999999999999998899999887777666665443
No 127
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.40 E-value=1.7e-11 Score=128.41 Aligned_cols=176 Identities=11% Similarity=0.058 Sum_probs=136.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+..+.+.+..++...+++++..++|.|+.+ +|++..+++...+.+.++..++.++.|+++|| +|||+.+.++..+..+
T Consensus 205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-~~~~~~~~~~~~l~~~ 282 (393)
T PRK09705 205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARH-QDRRKLLMLALVLQLV 282 (393)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHH
Confidence 456666666777788899999999999986 79999999999999999999999999999999 7999999988877777
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCC-CCchhhhhhhhhHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDE-EDPKEKKSKTSFYS 193 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~ 193 (562)
+..++... +. +.... ..++.|++.+...|.......+.+++ ++ +++.++
T Consensus 283 ~~~~~~~~---~~-------------------~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~~~g 332 (393)
T PRK09705 283 GFCGFIWL---PL-------------------QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAI------AGKLVA 332 (393)
T ss_pred HHHHHHHc---cc-------------------hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHH------HHHHHH
Confidence 66654432 11 11112 23456788888888877777777753 34 789999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHHHHhcCc
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGY-WVLGFWICAGCDILAFSSLLSGTL 242 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~-~~~~f~i~~~~~~~~~~~~~~~~~ 242 (562)
+.+...++++.++|.+.|++.+..| |+..|++.+++.+++.+......+
T Consensus 333 ~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (393)
T PRK09705 333 FMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP 382 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998765 888888877776666555444433
No 128
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.39 E-value=1.4e-09 Score=110.21 Aligned_cols=375 Identities=15% Similarity=0.069 Sum_probs=214.2
Q ss_pred HHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhccc-----chHH-HHHHHHHHHHHHHHHHhhhcccccCCCCCCC
Q 035554 62 AKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLG-----RYLT-CVTFQAFSIIGLLGLSFATQSFLLRPHGCGK 135 (562)
Q Consensus 62 ~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-----rk~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (562)
+..+++++..-.+.+++...+... ..+..|+.||++ + ||-- +..|.++...+..+++++.-.-. .
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~--~----- 76 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLA--E----- 76 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHc--c-----
Confidence 355789999999988888766655 578999999995 6 5544 44666677766666655522111 0
Q ss_pred CCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhccc
Q 035554 136 IGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAEN 215 (562)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~ 215 (562)
+.+.-+.+.........++..+.|+|.+...++..++.+|..|+|+ |.+..++.+...-+|..++..+.+.+.+
T Consensus 77 ~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~ 150 (403)
T PF03209_consen 77 SGQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLD 150 (403)
T ss_pred cccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 0000011111223345566667899999999999999999999988 9999999999999999999999988777
Q ss_pred ccchhHHH----HHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCCCCCCCccccchhhhhccC
Q 035554 216 MGYWVLGF----WICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANG 291 (562)
Q Consensus 216 ~~~~~~~f----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (562)
.++..-.. ..+.+..++..+..+-..++.+...+..++.+..++ .++++-..
T Consensus 151 ~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~~f~---~a~~~~~~--------------------- 206 (403)
T PF03209_consen 151 PFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERPRPPFR---EAWRQVWA--------------------- 206 (403)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCCCccHH---HHHHHHHh---------------------
Confidence 66543222 222233333333344333333222100000000000 00000000
Q ss_pred cccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCc--ccccCcc---ccccch
Q 035554 292 TRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVS--NFQIPPA---SMTAFD 366 (562)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~ 366 (562)
..+..+++-. ++ .....++.++ ..++ .|+ .|.++.+ .++...
T Consensus 207 -----~~~a~~f~~f---------------------l~-----l~t~a~~~QD-~iLE-Pygg~Vfgmsv~eTT~Lta~~ 253 (403)
T PF03209_consen 207 -----SPQARRFFVF---------------------LF-----LGTLAFFMQD-VILE-PYGGEVFGMSVGETTRLTAFW 253 (403)
T ss_pred -----CCChhHHHHH---------------------HH-----HHHHHHHhhH-HHcC-CchhHHcCCCHHHHHHHHHHH
Confidence 0000011000 00 0012222221 1111 111 2344432 334444
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHH
Q 035554 367 IVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQY 446 (562)
Q Consensus 367 ~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (562)
....++...+...+.. |. .++.+....|..+.++++....... ...+.+.+-+..
T Consensus 254 ~~G~L~G~~~~g~~l~----~~-------~~~~~~a~~G~~~~~~~f~lii~a~--------------~~~~~~~~~~~~ 308 (403)
T PF03209_consen 254 GGGTLLGMLLAGFLLS----RR-------LGKKRTAALGCLLGALAFALIILAG--------------PLGSPWLFRPGV 308 (403)
T ss_pred HHHHHHHHHHHHHHhc----CC-------CCchHHHHHHHHHHHHHHHHHHHHH--------------hcccchHHHHHH
Confidence 5555555555554322 21 1223334455555555554443331 123556777899
Q ss_pred HHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHH
Q 035554 447 VLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFL 526 (562)
Q Consensus 447 ~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~ 526 (562)
+++|++.++......+...+.++++..|..+|.|...++++..++..+.+.+.+.... +. ++-....|...|.+
T Consensus 309 ~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~-----~~-~~~~~~aY~~VF~l 382 (403)
T PF03209_consen 309 FLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRA-----LF-GNSPALAYGVVFAL 382 (403)
T ss_pred HHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hc-cCCcchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988775521 11 10012344555666
Q ss_pred HHHHHHHHHHHHH
Q 035554 527 SATVTAMNLGVFV 539 (562)
Q Consensus 527 ~~~~~~~~~~~~~ 539 (562)
-++..++++.+..
T Consensus 383 Ea~ll~~a~~ll~ 395 (403)
T PF03209_consen 383 EAVLLLAALVLLG 395 (403)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 129
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.39 E-value=1e-11 Score=138.07 Aligned_cols=134 Identities=12% Similarity=0.044 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHH
Q 035554 76 TFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISI 155 (562)
Q Consensus 76 ~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (562)
......++..++.+++|+++|| +|||+++.++.++.+++.+++.+. ++ ...+++.+
T Consensus 600 ~~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~lsai~~ll~~~~---~s--------------------~~~ll~~~ 655 (742)
T TIGR01299 600 VNFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVLSCISCFFLSFG---NS--------------------ESAMIALL 655 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHH---cc--------------------HHHHHHHH
Confidence 3455668889999999999999 799999999999888888777665 21 44466667
Q ss_pred HHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHH
Q 035554 156 YLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFS 235 (562)
Q Consensus 156 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~ 235 (562)
++.++..++..+...++++|++|++. |++++++.+...++|++++|.+++++.+. +...+|++.+++.+++.+
T Consensus 656 ~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~l 728 (742)
T TIGR01299 656 CLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGL 728 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHH
Confidence 77787777788899999999999988 99999999999999999999999987663 456778777776666655
Q ss_pred HHHhc
Q 035554 236 SLLSG 240 (562)
Q Consensus 236 ~~~~~ 240 (562)
+.++.
T Consensus 729 l~~~L 733 (742)
T TIGR01299 729 LALKL 733 (742)
T ss_pred HHHhC
Confidence 54443
No 130
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.39 E-value=1.7e-11 Score=125.15 Aligned_cols=174 Identities=26% Similarity=0.288 Sum_probs=151.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchH-HHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYL-TCVTFQAFSI 113 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~-~i~~~~~~~~ 113 (562)
|..+...+..++..........+.+.|.++.+|.+..+.+.......++..++.++.|+++|| +|||+ .+..+..+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 253 (352)
T cd06174 175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDR-LGRRRLLLLIGLLLAA 253 (352)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHH
Confidence 444555666677778888888899999998889999999999999999999999999999999 79999 9999988888
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.+.+... + +.+.+++..++.+++.+...+...++..|..|+++ |++.++
T Consensus 254 i~~~~~~~~---~--------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 304 (352)
T cd06174 254 LGLLLLALA---P--------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTASG 304 (352)
T ss_pred HHHHHHHHh---c--------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHHHH
Confidence 888877664 1 26677888999999999999999999999999877 999999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
+++...++|..++|.+.+++.+..+|+..|++..++.+++.+...
T Consensus 305 ~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 305 LFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 999999999999999999999888999999988887777666543
No 131
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.38 E-value=1.1e-11 Score=131.48 Aligned_cols=178 Identities=15% Similarity=0.098 Sum_probs=115.8
Q ss_pred HHHHHHHH-HHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 36 CGTLLLVN-QGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 36 ~~~~l~~~-~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
..+.+... .++....+|++..++|.|+++++|++..+.+...+...++..++.++.|+++|| +|||+.+.++.++..+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~ 321 (432)
T PRK10406 243 RAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK-IGRRTSMLCFGSLAAL 321 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHH
Confidence 33443333 344578899999999999999999999999988888888888999999999999 7999988876654433
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
......... +. ..+....+....+..+..+...+....+..|.+|++. |+++.++
T Consensus 322 ~~~~~~~~~--~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~ 376 (432)
T PRK10406 322 FTVPILSAL--QN-----------------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGL 376 (432)
T ss_pred HHHHHHHHH--Hc-----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhH
Confidence 332221110 00 0012222222222223333344566788899999999 9999999
Q ss_pred HHHHHh-HHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 035554 195 FYIALN-LGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 195 ~~~~~~-lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
.+...+ +++..+|.+.+++.....|...+++.++..+++.+..++
T Consensus 377 ~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 377 SYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 766555 445568888887654334666666655555555554443
No 132
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.37 E-value=1.4e-11 Score=129.47 Aligned_cols=170 Identities=16% Similarity=0.106 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhCCChh---hhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHH
Q 035554 41 LVNQGLANLAFAGVEVNMVLFAKSVLRQTNA---EASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLL 117 (562)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~---~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~ 117 (562)
+...++.......+.++++.|+.+..+.... ..+.+.++..++..++.+..|+++|| +|||+++..+..+..++.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~ 303 (408)
T PRK09874 225 FVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDR-IGPEKILITALIFSVLLLI 303 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHH
Confidence 3333444455556677788888775543221 24555666778888899999999999 7999999988887776666
Q ss_pred HHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHH
Q 035554 118 GLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYI 197 (562)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 197 (562)
.+... + +.+.+++.+++.|++.+...|...++..+..|+++ |++.+++++.
T Consensus 304 ~~~~~---~--------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~ 354 (408)
T PRK09874 304 PMSFV---Q--------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQS 354 (408)
T ss_pred HHHHh---c--------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHH
Confidence 55443 1 25667788888999999999999999988888777 8999999999
Q ss_pred HHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 198 ALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 198 ~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
..++|..++|.++|++.+..||+..|++.+++.+++.+..+..
T Consensus 355 ~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 355 FRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred HHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998999999999888777776655443
No 133
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.36 E-value=1.2e-11 Score=132.22 Aligned_cols=176 Identities=14% Similarity=0.104 Sum_probs=126.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcc--cchHHHH-HHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYL--GRYLTCV-TFQAF 111 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~--Grk~~i~-~~~~~ 111 (562)
+.+|...+..++.....+++..++|.|++++.|++..+++.+...+.++..++.+++|+++|| + |||+... ....+
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr-~~~~r~~~~~~~~~~l 331 (452)
T PRK11273 253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 331 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCcchHHHHHHHH
Confidence 567778888888888889999999999999999999999999888999999999999999999 6 4554332 22233
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
..++.+++.+. +. .+....+++.++.|.+.....+....+..|.+|+++ |+++
T Consensus 332 ~~~~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~ 384 (452)
T PRK11273 332 VTIATIVYWLN---PA------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGTA 384 (452)
T ss_pred HHHHHHHHHHh---cc------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhhH
Confidence 33333332221 11 113333444445555433323333456678898888 9999
Q ss_pred HHHHHHHHhHHHHH-HhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 192 YSYFYIALNLGCLF-SETVLVYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 192 ~~~~~~~~~lg~~~-~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
.++++...++|+.+ +|.+.|++.+..||+..|++.+++.+++.+...
T Consensus 385 ~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 385 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 99999988998765 799999999988999999888876666655544
No 134
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.36 E-value=2.4e-11 Score=115.16 Aligned_cols=181 Identities=19% Similarity=0.151 Sum_probs=146.4
Q ss_pred CCCCccccCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccch
Q 035554 23 GKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRY 102 (562)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk 102 (562)
+.|...+.+.....+|.+.+..++...+.+=..+.-+.++++.+|+|+..++.+.+.....+....++.|.++|| .|++
T Consensus 252 e~pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk-~G~n 330 (459)
T KOG4686|consen 252 EEPKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDK-YGFN 330 (459)
T ss_pred CCcccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhh-hcce
Confidence 456666667777899999999999999888888888999999999999999999999999999999999999999 6998
Q ss_pred HHHHHHHH-HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCC
Q 035554 103 LTCVTFQA-FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEED 181 (562)
Q Consensus 103 ~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 181 (562)
-..+.+.. ....+...+.++ .+--+.++.+.|+......-+..+.++-..|+++
T Consensus 331 ~~wv~~a~~~tl~~H~~l~Ft-------------------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~q 385 (459)
T KOG4686|consen 331 LWWVASACILTLLGHSGLFFT-------------------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ 385 (459)
T ss_pred ehhHHHHHHHHHHHhhhHHhh-------------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH
Confidence 87775544 556666666664 3335667778888888877778889999999999
Q ss_pred chhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccc---hhHHHHHHHHHHHHHHH
Q 035554 182 PKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGY---WVLGFWICAGCDILAFS 235 (562)
Q Consensus 182 ~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~---~~~~f~i~~~~~~~~~~ 235 (562)
.|++++..+...|+|-.+.|++.|.+.+.-| |--.|.+....+++..+
T Consensus 386 ------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~sv 436 (459)
T KOG4686|consen 386 ------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSV 436 (459)
T ss_pred ------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987543 44455555544444333
No 135
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.35 E-value=3.8e-11 Score=124.69 Aligned_cols=177 Identities=18% Similarity=-0.007 Sum_probs=131.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHH-HHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCV-TFQAFSI 113 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~-~~~~~~~ 113 (562)
|..+...+..++.....+.+..+++.|+++.+|.+..+.+++.+...++..++.+++|+++|| +|||+... .......
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 293 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDL-LLRRGKSLVFARKTAI 293 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HhhcccchhHHHHHHH
Confidence 567778888888889999999999999999999999999999999999999999999999999 79986211 1111111
Q ss_pred HHH---HHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 114 IGL---LGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 114 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
++. .+..+.. .. ....+.......+.+.+.+ ..+...++..|.+|+++ |++
T Consensus 294 ~~~~~~~~~~~~~--~~-----------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g~ 347 (399)
T TIGR00893 294 IAGLVLSLLMFAT--NY-----------------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------AGL 347 (399)
T ss_pred HHHHHHHHHHHHh--cc-----------------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------HHH
Confidence 111 1111110 00 0112333333333344444 78899999999999888 999
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHHHH
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENMGY-WVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~-~~~~f~i~~~~~~~~~~~~~ 238 (562)
..++.+...++|..++|.+.+++.+..| |+..|++.+++.+++.++.+
T Consensus 348 ~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 348 TGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888 99999887777666655443
No 136
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.35 E-value=2.1e-11 Score=129.47 Aligned_cols=176 Identities=16% Similarity=0.094 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcc--cchHHH-HHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYL--GRYLTC-VTFQAF 111 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~--Grk~~i-~~~~~~ 111 (562)
+.++.+.+..++....++++..++|.|+++++|++..+++...+.+.++..++.+++|+++|| + ++|+.. ....+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~r~~~~~~~~~~ 321 (434)
T PRK11663 243 PYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDK-LFNGNRGPMNLIFAAG 321 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHH-hccCCccHHHHHHHHH
Confidence 456777777777778888888999999988899999999999999999999999999999999 5 223332 222211
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
..+....+... +. .+.....+..++.|++.............|.+|+++ |+++
T Consensus 322 ~~~~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 374 (434)
T PRK11663 322 ILLSVGSLWLM---PF------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGAA 374 (434)
T ss_pred HHHHHHHHHHc---cc------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHhH
Confidence 12222111111 11 012223333333444332222233456688888777 9999
Q ss_pred HHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 192 YSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
.++.+...++|..++|.+.|++.+..||+..|++.+++.+++.+..+
T Consensus 375 ~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 375 TGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL 421 (434)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988999999988887766655444
No 137
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.34 E-value=8.7e-12 Score=131.85 Aligned_cols=172 Identities=15% Similarity=0.057 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh---CCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 37 GTLLLVNQGLANLAFAGVEVNMVLFAKSVL---RQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~~~~y~~~~l---g~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
++.+.+..++....+......++.|+.+.+ +.+..+.|.+.+...++..++.+++|+++|| +|||+.+..+.++..
T Consensus 225 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~l~~ 303 (420)
T PRK09528 225 FWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINR-IGAKNALLLAGTIMA 303 (420)
T ss_pred eEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHHHH
Confidence 333333344444445555556778877654 5666788999999999999999999999999 799999999888888
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.+++.++ + +.+.+++.+++.+++.+...+....++.|.+|++. |++..+
T Consensus 304 ~~~~l~~~~---~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~ 354 (420)
T PRK09528 304 VRIIGSGFA---T--------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYL 354 (420)
T ss_pred HHHHHHHhc---c--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeee
Confidence 887777665 1 25667778888888888777777888899888777 677766
Q ss_pred H-HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 194 Y-FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 194 ~-~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
. ++...++|.+++|.+.|++.+..||+..|.+.+++.++..++.+
T Consensus 355 ~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 400 (420)
T PRK09528 355 VGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV 400 (420)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence 5 67788999999999999999988999999987776665554443
No 138
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.34 E-value=4.1e-11 Score=125.05 Aligned_cols=169 Identities=8% Similarity=-0.106 Sum_probs=143.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.++...+..++...+.+....+.+.|+++ +|.+..+.|.+.+...++..++.++.|++.|| +|+|+.+.++.++..+
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r-~g~~~~l~~~~~~~~~ 282 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQN-CSARDLLLISAIACVG 282 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhh-CCHHHHHHHHHHHHHH
Confidence 667777777888888888889999999975 89999999999999999999999999999999 7999999999999998
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
..+++++. + +.+.+++...+.|+..+...+....++.+. |+++ |+++.++
T Consensus 283 ~~~~~~~~---~--------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~ 332 (382)
T TIGR00902 283 RWAIIGAI---E--------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQAL 332 (382)
T ss_pred HHHHHHhH---h--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHH
Confidence 88887765 2 367788889999999999999999999987 7777 7888888
Q ss_pred HH-HHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHH
Q 035554 195 FY-IALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSS 236 (562)
Q Consensus 195 ~~-~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~ 236 (562)
++ ....+|.+++|.++|++.+..|+ ..|++.+++.+++.++
T Consensus 333 ~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 333 YNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 76 46689999999999999998886 5677666665555443
No 139
>PRK12382 putative transporter; Provisional
Probab=99.33 E-value=4.1e-11 Score=125.44 Aligned_cols=171 Identities=15% Similarity=0.058 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIG 115 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~ 115 (562)
..+...+..++...++..+..+.+.|+++ .|++ +.+.....+.++..++.++.|++.|| +|+||.+..+..+..++
T Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~ 292 (392)
T PRK12382 217 LIWKPGLGLALQGVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDR-FGGVKVAIVSLLVETVG 292 (392)
T ss_pred HHHHhHHHHHHHHHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeehHHHHHHHHHH
Confidence 33333333344556666777788888865 4554 35566667788888999999999999 79999999998888888
Q ss_pred HHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHH
Q 035554 116 LLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYF 195 (562)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 195 (562)
.+++.+. + +.+.++++.++.|++.+...|...+...|.+|+++ |++..+++
T Consensus 293 ~~~~~~~---~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~ 343 (392)
T PRK12382 293 LLLLWLA---P--------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGY 343 (392)
T ss_pred HHHHHHc---c--------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHH
Confidence 7766553 2 25566778888899998888888888899888877 99999999
Q ss_pred HHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 035554 196 YIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 196 ~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
+...++|..++|.+.+++.+..||+..|.+.+++.+++.++.+.
T Consensus 344 ~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 344 AAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999899999999888877776665543
No 140
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.32 E-value=2.8e-11 Score=126.65 Aligned_cols=160 Identities=14% Similarity=0.054 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Q 035554 37 GTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGL 116 (562)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~ 116 (562)
+..+.....+.+....+...++|.|+++++|++..+.+.+.+...++..++.++.|+++|| +|||+.+.++..+..+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~ 318 (405)
T TIGR00891 240 FVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDW-LGRRKAYVCSLLAGQLLI 318 (405)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhhhHHHHHHHHHHH
Confidence 3444444555566667777889999999999999999999999999999999999999999 799999988876553332
Q ss_pred HHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHH
Q 035554 117 LGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFY 196 (562)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 196 (562)
...... . .+.+.+.++.++.++..+...+..++++.|.+|+++ |++.+++.+
T Consensus 319 ~~~~~~---~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~ 370 (405)
T TIGR00891 319 IPVFAI---G-------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFTY 370 (405)
T ss_pred HHHHHh---C-------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHHH
Confidence 222111 1 124455566566666666677888899999999888 999999999
Q ss_pred HHHhHHHHHHhhhhhhcccccc-hhHHHHH
Q 035554 197 IALNLGCLFSETVLVYAENMGY-WVLGFWI 225 (562)
Q Consensus 197 ~~~~lg~~~~~~~~~~l~~~~~-~~~~f~i 225 (562)
...++|+.++|.+.|++.+..| |+..+..
T Consensus 371 ~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 371 QLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 9999999999999999999887 7766654
No 141
>PRK03545 putative arabinose transporter; Provisional
Probab=99.32 E-value=1.2e-10 Score=121.97 Aligned_cols=174 Identities=11% Similarity=-0.072 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIG 115 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~ 115 (562)
.++......++.....++...+++.|+++++|.|..+.+++.+...++..++.++.|+++|| +|||+.+ .+..+..++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~-~~~~~~~~~ 283 (390)
T PRK03545 206 ALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNR-HPSGFLL-IAIALLLVC 283 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHH-HHHHHHHHH
Confidence 44555555566666777777888899988899999999999999999999999999999999 7988654 444444444
Q ss_pred HHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHH
Q 035554 116 LLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYF 195 (562)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 195 (562)
..+.... + .+.+.+++..++.|++.+...+...+.+.+..| ++ |+++.+++
T Consensus 284 ~~~l~~~---~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g~~ 334 (390)
T PRK03545 284 LLLLLPA---A-------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMALF 334 (390)
T ss_pred HHHHHHH---h-------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHHHH
Confidence 3332221 1 125566677778888888777777788877765 45 78899999
Q ss_pred HHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 196 YIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 196 ~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
+...++|..+||.++|++.+..|++..|++.+.+.+++.+.....
T Consensus 335 ~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
T PRK03545 335 SGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILI 379 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888777776665443
No 142
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.32 E-value=2.3e-11 Score=115.35 Aligned_cols=137 Identities=14% Similarity=0.139 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCC
Q 035554 54 VEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGC 133 (562)
Q Consensus 54 ~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (562)
-..-+..+++.+.++..++..++.++|..-..+.++++|++.||.+|-|..-++-+.+..+|.+..+...-
T Consensus 62 ~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi--------- 132 (459)
T KOG4686|consen 62 APGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI--------- 132 (459)
T ss_pred CchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH---------
Confidence 44556778888888888889999999999999999999999999999877666666666667766544311
Q ss_pred CCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhc
Q 035554 134 GKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYA 213 (562)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l 213 (562)
...+|.+..+|+++|+|.-....+.+.+...+|..++ ....++++.....+|...-..+.+++
T Consensus 133 -----------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~l 195 (459)
T KOG4686|consen 133 -----------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFL 195 (459)
T ss_pred -----------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHH
Confidence 1359999999999999999989999999999999988 89999999999999988777777777
Q ss_pred ccc
Q 035554 214 ENM 216 (562)
Q Consensus 214 ~~~ 216 (562)
.++
T Consensus 196 y~~ 198 (459)
T KOG4686|consen 196 YDT 198 (459)
T ss_pred HHH
Confidence 654
No 143
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=99.31 E-value=5e-11 Score=124.11 Aligned_cols=189 Identities=19% Similarity=0.163 Sum_probs=141.2
Q ss_pred CCCccccCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-hhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc-
Q 035554 24 KPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKS-VLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGR- 101 (562)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~-~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr- 101 (562)
++.....+.+||.+++..+..++..+.++...+.+-.|+++ +.+.+.+..|++++...++..++.+..|+-+.| .|+
T Consensus 23 ~~~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k-~~~~ 101 (488)
T KOG2325|consen 23 LSPLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNK-TGSV 101 (488)
T ss_pred cccccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccc-cCCc
Confidence 34445567899999999999999999999998889999885 467788889999999999999999999999999 575
Q ss_pred hHHHHHHHHHHHHHHHHH-HhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCC
Q 035554 102 YLTCVTFQAFSIIGLLGL-SFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEE 180 (562)
Q Consensus 102 k~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~ 180 (562)
|+-++.+.++.++|.++. ++. ..|+ ...++++++|++.|+|.|. ....-+++++.-..+
T Consensus 102 k~Pli~s~ii~~~g~llY~~l~-~~~~------------------~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~ 161 (488)
T KOG2325|consen 102 KKPLIVSFLIAIIGNLLYLALA-YVPN------------------GVKYLMLVARILTGVGVGN-FAVLRAYIADASTVE 161 (488)
T ss_pred ccCHHHHHHHHHHHHHHHHHHH-hccc------------------chHHHHHHHHHHcCcCccc-HHHHHHHHHhccCcc
Confidence 888888999999999888 443 2232 2588999999999999876 467788999876666
Q ss_pred CchhhhhhhhhHHHHHHHHhHHHHHHhhhh----hhcccc---------cchhHHHHHHHHHHHHHHHHHHh
Q 035554 181 DPKEKKSKTSFYSYFYIALNLGCLFSETVL----VYAENM---------GYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 181 ~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~----~~l~~~---------~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
+ |.++++....+..+|..+||.+. +...+. .-|..+-|+.++.-++..+.+..
T Consensus 162 d------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~ 227 (488)
T KOG2325|consen 162 D------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILF 227 (488)
T ss_pred c------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHh
Confidence 6 77887776665555555555544 333221 12445555555555444444433
No 144
>PRK15075 citrate-proton symporter; Provisional
Probab=99.31 E-value=5.1e-11 Score=126.61 Aligned_cols=158 Identities=17% Similarity=0.132 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+.........++....++++..++|.|+++.+|++..+.++....+.++..++.+++|+++|| +||||++..+.++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~ 316 (434)
T PRK15075 238 RIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDR-IGRRPVLIAFTVLAIL 316 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHH
Confidence 333333444455667788899999999999899999999988888889999999999999999 7999998876554332
Q ss_pred HHH-HHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 115 GLL-GLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 115 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
... ...... +. .......+...+.+++.+...+...++..|.+|++. |+++.+
T Consensus 317 ~~~~~~~~~~--~~------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g 370 (434)
T PRK15075 317 TAYPALSWLV--AA------------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFS 370 (434)
T ss_pred HHHHHHHHHH--cC------------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchhee
Confidence 221 111110 00 112233333444556666666777788999999888 889999
Q ss_pred HHHHHH-hHHHHHHhhhhhhcccccch
Q 035554 194 YFYIAL-NLGCLFSETVLVYAENMGYW 219 (562)
Q Consensus 194 ~~~~~~-~lg~~~~~~~~~~l~~~~~~ 219 (562)
+.+... .+++.++|.+.+++.+..|+
T Consensus 371 ~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 371 LAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 854444 45678899999999887775
No 145
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.31 E-value=5.9e-11 Score=125.41 Aligned_cols=158 Identities=14% Similarity=-0.041 Sum_probs=129.5
Q ss_pred HHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 035554 51 FAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRP 130 (562)
Q Consensus 51 ~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (562)
..++..++|.|+++.+|.+..+.+++.+.+.++..++.++.|+++|| .++++.+..+.++.+++.+++.+. +
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~---~---- 310 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHS-ARPGLLMLLSTLGSFLAVGLFGLM---P---- 310 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhc-cCcchHHHHHHHHHHHHHHHHHcc---c----
Confidence 45677788999998899999999999999999999999999999999 688888888887777777665543 2
Q ss_pred CCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhh
Q 035554 131 HGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVL 210 (562)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~ 210 (562)
+.+...++.++.|++.+...+...+++.|.+|++. |+++.++++...++|..++|.+.
T Consensus 311 ----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~l~ 368 (417)
T PRK10489 311 ----------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIGAALL 368 (417)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHHHHHH
Confidence 24556677777888888777777888899998877 89999999999999999999999
Q ss_pred hhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 211 VYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 211 ~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
|++.+..|++..+++.+++..+..++..
T Consensus 369 G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 396 (417)
T PRK10489 369 GGLGAMMTPVASASASGFGLLIIGVLLL 396 (417)
T ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHH
Confidence 9999988988888776665554444433
No 146
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.30 E-value=9.7e-11 Score=122.20 Aligned_cols=161 Identities=12% Similarity=0.136 Sum_probs=125.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhh
Q 035554 44 QGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFAT 123 (562)
Q Consensus 44 ~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~ 123 (562)
.+.....+.....++|.|+++ .|.+..+.+.+.+...++..++.++.|+++|| +|+|+++..+.++..++.++.. .
T Consensus 209 ~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~~~~-~- 284 (381)
T PRK03633 209 CIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADR-FGRLLVLRVQVFVVILGSIAML-S- 284 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-cCcHHHHHHHHHHHHHHHHHHh-h-
Confidence 333344455556678888875 69999999999999999999999999999999 7999999888777776655432 1
Q ss_pred cccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHH
Q 035554 124 QSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGC 203 (562)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 203 (562)
.......+.+.+++.+...|...+.+.|..|+++ ++...+.++...++|.
T Consensus 285 ------------------------~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~ 334 (381)
T PRK03633 285 ------------------------QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGS 334 (381)
T ss_pred ------------------------hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHH
Confidence 1123345566677777778888888899887665 6677778888889999
Q ss_pred HHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 204 LFSETVLVYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
+++|.++|++.+.++|++.|.+.+.+.++..+.++
T Consensus 335 ~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 335 LLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 99999999999989999999988777766655444
No 147
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.30 E-value=1.7e-11 Score=107.48 Aligned_cols=133 Identities=17% Similarity=0.170 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHH
Q 035554 77 FSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIY 156 (562)
Q Consensus 77 ~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (562)
.+.+.++..++.++.|+++|| +|||+.+..+..+..++.+.+... + +.+.+.+.++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~---~--------------------~~~~~~~~~~ 59 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDR-FGRKPVLLVGLFIFVLSTAMFALS---S--------------------NITVLIIARF 59 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHh---c--------------------cHHHHHHHHH
Confidence 345667888999999999999 799999999988888887776654 1 3667888899
Q ss_pred HHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHH
Q 035554 157 LFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSS 236 (562)
Q Consensus 157 l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~ 236 (562)
+.|++.+...+...++..|.+|+++ |++..++.+...++|..++|.+.+++.+..+|+..|++..+..+++.+.
T Consensus 60 ~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (141)
T TIGR00880 60 LQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFIL 133 (141)
T ss_pred HHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888 9999999999999999999999999988889999998877766655554
Q ss_pred HHh
Q 035554 237 LLS 239 (562)
Q Consensus 237 ~~~ 239 (562)
...
T Consensus 134 ~~~ 136 (141)
T TIGR00880 134 LAF 136 (141)
T ss_pred Hhh
Confidence 443
No 148
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.30 E-value=1.5e-10 Score=121.69 Aligned_cols=176 Identities=15% Similarity=0.060 Sum_probs=131.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHH-HHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCV-TFQAFSI 113 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~-~~~~~~~ 113 (562)
|.++...+..++...++++...++|.|+++ +|++..+.+.+.+...++..++.++.|+++|| +|||+.+. .+.+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~l~~~ 299 (402)
T TIGR00897 222 PNVLLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDK-LGWMNTVRWFGGVGCG 299 (402)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHH
Confidence 566777777788888999999999999864 89999999999999999999999999999999 79988764 3333333
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.+.+... +. ....+.+..++..++.|++.+...+ ..+...|.. +++ |+++++
T Consensus 300 ~~~~~l~~~---~~---------------~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~------~g~~~g 353 (402)
T TIGR00897 300 IFTLALYYI---PQ---------------HFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKH------KGAAMS 353 (402)
T ss_pred HHHHHHHHH---HH---------------ccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cch------hHHHHH
Confidence 333222222 10 0011345556667777877776544 345566654 345 899999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
+++...++|..++|.+++++.+..||...|++.+++.+++.++..
T Consensus 354 ~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 354 VLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTA 398 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988999999988877766655544
No 149
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.28 E-value=1e-10 Score=126.45 Aligned_cols=151 Identities=13% Similarity=0.004 Sum_probs=115.9
Q ss_pred HhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 035554 52 AGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPH 131 (562)
Q Consensus 52 ~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (562)
+.+..++|.|+++++|++..+.+.+.+.+.++..++.+++|+++|| +|||+++..+.++..++.++.... +.
T Consensus 292 ~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~---~~---- 363 (496)
T PRK03893 292 WPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW-LGTRKAYVCSLLISQLLIIPVFAI---GG---- 363 (496)
T ss_pred chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhhc---cc----
Confidence 3466789999998999999999999999999999999999999999 799999888876665554433322 10
Q ss_pred CCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhh
Q 035554 132 GCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLV 211 (562)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~ 211 (562)
...+...+..++.+.......+..++++.|.+|+++ |++.+++++...++|+.++|.++|
T Consensus 364 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l~g 423 (496)
T PRK03893 364 --------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPILGA 423 (496)
T ss_pred --------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHHHH
Confidence 123333344444333333345677788899998877 899999999999999999999999
Q ss_pred hcccccchhHHHHHHHHHH
Q 035554 212 YAENMGYWVLGFWICAGCD 230 (562)
Q Consensus 212 ~l~~~~~~~~~f~i~~~~~ 230 (562)
++.+..||+..+...+.+.
T Consensus 424 ~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 424 LIAQRLDLGTALASLSFSL 442 (496)
T ss_pred HHhccCChHHHHHHHHHHH
Confidence 9999889988776554433
No 150
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.28 E-value=1.3e-09 Score=110.25 Aligned_cols=345 Identities=14% Similarity=0.077 Sum_probs=188.6
Q ss_pred hhHHHHHHHHHHhhCC---Ch----hhhhhHHHHHHHHHHHHHHHHHHHhhhcccchH-HHHHHHHHHHHHHHHHHhhhc
Q 035554 53 GVEVNMVLFAKSVLRQ---TN----AEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYL-TCVTFQAFSIIGLLGLSFATQ 124 (562)
Q Consensus 53 ~~~~~~~~y~~~~lg~---s~----~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~-~i~~~~~~~~~~~~~~~~~~~ 124 (562)
.+.+.+|+|+++..+- +. +-.+...++..+...+..|+-|.++|. .|+|| .+.+..++..+..+.+.+.
T Consensus 33 vtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~-~g~Rk~~~~~f~~i~i~~~~~L~~i-- 109 (438)
T COG2270 33 VTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADY-PGPRKKFFGFFTAIGIISTFLLWFI-- 109 (438)
T ss_pred eeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCcchHHHHHHHHHHHHHHHHHHh--
Confidence 3556789999987665 33 335666777788888888999999999 68555 5556666777777777665
Q ss_pred ccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHH
Q 035554 125 SFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCL 204 (562)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~ 204 (562)
|. ....+..++...+..++.........+++.|..++++ .++..+.-+...++|+.
T Consensus 110 -~~-----------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~riS~lg~~~gylgs~ 165 (438)
T COG2270 110 -PP-----------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGRISGLGWALGYLGSV 165 (438)
T ss_pred -CC-----------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc------cCcccccccccccccch
Confidence 22 1235556666777888888889999999999988776 44555554455566665
Q ss_pred HHhhhhhhc---c---------------cccchhHHHHHHHHHHHHHHHHHHhcCcceeec-CCCCCchhHHHHHHHHHH
Q 035554 205 FSETVLVYA---E---------------NMGYWVLGFWICAGCDILAFSSLLSGTLRYRHF-KPSGNPLSRFSQVIVASL 265 (562)
Q Consensus 205 ~~~~~~~~l---~---------------~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 265 (562)
+.-+++... . +...-|..+.++++..++..+=+++..++.+.. .|..+....-.+.++..+
T Consensus 166 i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~~~l~~g~k~L~~t~ 245 (438)
T COG2270 166 ILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPPTALRNGFKELKSTF 245 (438)
T ss_pred HHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccchHHHHHHHHHHHHHH
Confidence 554433111 1 112346666666665554444444333332221 122222233233333333
Q ss_pred hhhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHh
Q 035554 266 RKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQG 345 (562)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 345 (562)
|+.+. +++...|+-...+.. ..+.....+-..|-...
T Consensus 246 k~i~~--------------------------~~~i~~FLiA~~~~~-----------------DGv~til~~~~~fg~~~ 282 (438)
T COG2270 246 KEIRG--------------------------RKNLVLFLIARFFYI-----------------DGVNTILAMGGVFGAAD 282 (438)
T ss_pred HHHhc--------------------------ccchHHHHHHHHHHH-----------------hhHHHHHHHHHHHHHHH
Confidence 32100 111112221110000 00000000111111111
Q ss_pred hhccCCCcccccCccccccchhHHHHHHHHHHHHHHHH-hhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035554 346 AAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVP-LYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRL 424 (562)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~ 424 (562)
.+.+ ...+.. .+..+........++.+ +-+|++. ...+..++++..+..+...+.+
T Consensus 283 ~gls---------~~~lll--~g~~~~vvA~lg~ii~g~Ld~rfg~--------k~vl~~~lvi~~~~~~~~~~~~---- 339 (438)
T COG2270 283 LGLS---------STELLL--IGIALSVVAALGAIIAGFLDERFGS--------KPVLMIGLVILSIAALYLIFLE---- 339 (438)
T ss_pred cCcc---------HHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCC--------ceeehHHHHHHHHHHHHHHHcc----
Confidence 1111 111111 11111111122222223 3334433 2345566665555544443331
Q ss_pred hhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 035554 425 KYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTT 503 (562)
Q Consensus 425 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~ 503 (562)
.+.. ..+.-++.|...+......=++..+.+|++..+...|++++....++++||.+++.+..++.
T Consensus 340 ----------~~~~---f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg 405 (438)
T COG2270 340 ----------GELD---FWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG 405 (438)
T ss_pred ----------ccHH---HHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 1122 23444777888888888888999999999999999999999999999999999998887663
No 151
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.26 E-value=2.5e-10 Score=123.16 Aligned_cols=179 Identities=12% Similarity=0.059 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHH-HHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 035554 37 GTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFS-RWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIG 115 (562)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~-~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~ 115 (562)
.+.+....++...+.+....+.+.|+.+++|++..+.+.+.. ...++..++.+++|+++|| +|+||.+.++.++.+++
T Consensus 224 ~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr-~g~~~~l~i~~~l~~l~ 302 (491)
T PRK11010 224 AWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQR-LSLFRALMIFGILQGVS 302 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHH
Confidence 444444445666666677778888988889999999999875 5567999999999999999 79999888776655554
Q ss_pred HHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHH
Q 035554 116 LLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYF 195 (562)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 195 (562)
.+.+......+ .+...+.+..++..+..|...++..++..++.+++. +++.+++.
T Consensus 303 ~l~~~~l~~~~-------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~ 357 (491)
T PRK11010 303 NAGYWLLSITD-------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALL 357 (491)
T ss_pred HHHHHHHHhcc-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHH
Confidence 43332211000 123334444555555555555677888888888877 77889999
Q ss_pred HHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcC
Q 035554 196 YIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGT 241 (562)
Q Consensus 196 ~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~ 241 (562)
+...++|..+++.+.|++.+..||+..|.+..++.+.+.+.....+
T Consensus 358 ~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 358 SALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888999999989999999988888877766655443
No 152
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.24 E-value=2.6e-10 Score=115.29 Aligned_cols=164 Identities=9% Similarity=-0.011 Sum_probs=126.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh--hCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSV--LRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFS 112 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~--lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~ 112 (562)
|..++..+..++.-.+-.++..|++.|+++. +|++..+.+...+.+..+..++.+++++++|| +|+||++.++..+.
T Consensus 140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~l~ 218 (310)
T TIGR01272 140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAFLA 218 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHH
Confidence 4566666666665556778889999999854 79999999999999999999999999999999 79999998888777
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhH
Q 035554 113 IIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192 (562)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 192 (562)
+++.++.... +. . ....+.++.|++.+...|...+...+.+|++. +.+.
T Consensus 219 ~~~~~l~~~~---~~--------------------~-~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-------~~as 267 (310)
T TIGR01272 219 VLLSIGAALT---HG--------------------Y-VAMWFVLALGLFNSIMFPTIFSLALNALGRHT-------SQGS 267 (310)
T ss_pred HHHHHHHHHc---CC--------------------H-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhH
Confidence 7766544432 11 1 12335557899999999999998888776533 2333
Q ss_pred HHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHH
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDI 231 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~ 231 (562)
++. ....+|+++.|.+.|.+.+..|.+.+|++..++.+
T Consensus 268 ai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~~ 305 (310)
T TIGR01272 268 GIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCYL 305 (310)
T ss_pred HHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 443 46679999999999999998898888886665543
No 153
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.24 E-value=9.5e-11 Score=124.70 Aligned_cols=178 Identities=14% Similarity=0.078 Sum_probs=124.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+.+|.+.+..++.....+++..++|.|+++..|++..++++....+.++..++.+++|+++|| +|+++....+..+..+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~~~~~ 329 (438)
T TIGR00712 251 KLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFKGNRGATGVFFMTL 329 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcccHHHHHHHHH
Confidence 456777777777778888999999999999899999999999999999999999999999999 6754433333322221
Q ss_pred ---HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 115 ---GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 115 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
+.+.+... +. .+.+...+..+..|++.............|.+|+++ |+++
T Consensus 330 ~~~~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 382 (438)
T TIGR00712 330 VTIAVIVYWMN---PA------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTA 382 (438)
T ss_pred HHHHHHHHHhc---CC------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eeee
Confidence 11111111 10 012223333444454433322333345678888877 8999
Q ss_pred HHHHHHHHhHHH-HHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 192 YSYFYIALNLGC-LFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 192 ~~~~~~~~~lg~-~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
.++++...++|+ +++|.+.|.+.+..||...|++..+..+++.+..+..
T Consensus 383 ~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T TIGR00712 383 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 432 (438)
T ss_pred hhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 999998888875 6899999999998899999988777666665554443
No 154
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.24 E-value=1e-10 Score=118.04 Aligned_cols=185 Identities=11% Similarity=0.006 Sum_probs=145.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
.|..|.+.+..+.+.-++.++..++|.|+++++|.++.++|.....+.+.+.+..+++|+|||| +|.+|+..+....++
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR-~Gg~rv~~~~f~~~~ 295 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDR-IGGRRVTLAVFVGMA 295 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhh-ccchhHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999 799999999988888
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++..+..+. +.. .........++...+.+++..|.-......++...+|+ + -+...+
T Consensus 296 ~~~~~l~~~---~~~-------------~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~------~G~v~G 352 (417)
T COG2223 296 LAAALLSLF---LTG-------------FGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-E------TGAVTG 352 (417)
T ss_pred HHHHHHHcc---ccc-------------cccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-h------hhHHHH
Confidence 888777664 210 00012344444444445555555555667777777754 3 478888
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHHHHhcCc
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGY-WVLGFWICAGCDILAFSSLLSGTL 242 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~-~~~~f~i~~~~~~~~~~~~~~~~~ 242 (562)
+.....++|+..-|...+...+..| +...|++...+.+++.+..+....
T Consensus 353 ~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~ 402 (417)
T COG2223 353 IVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYA 402 (417)
T ss_pred HHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999888888888777666 888999888887777776554433
No 155
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.23 E-value=5.5e-10 Score=118.93 Aligned_cols=186 Identities=14% Similarity=0.026 Sum_probs=154.6
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccch--HHHHHHHH
Q 035554 33 GWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRY--LTCVTFQA 110 (562)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk--~~i~~~~~ 110 (562)
+.|.....+++.++.+-+...+......|.++++|++..+...+..+..+...+++++.|++.|| +|.| +++.++++
T Consensus 279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~l~ 357 (477)
T PF11700_consen 279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLISLI 357 (477)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHH
Confidence 34788888999999999999999999999999999999999999999999999999999999999 7999 89888887
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
++.+..+.-.+. ..+. .....+.+.+++.-++.|+..|...+..-++.+++.|+++ .+.
T Consensus 358 ~~~~i~~~g~~G-~~~~--------------~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~e 416 (477)
T PF11700_consen 358 LWIIIPLYGLFG-FWPS--------------FFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAE 416 (477)
T ss_pred HHHHHHHHHHHH-hhhc--------------ccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhH
Confidence 764433332221 0011 0011246678888889999999999999999999999988 899
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHHHHhc
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENMGY-WVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~-~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
.|+++....-..+.+||++.+.+.+..| .|.++....++.+++++++...
T Consensus 417 fFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 417 FFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999988765 8889888888888887776554
No 156
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.22 E-value=5.1e-10 Score=114.09 Aligned_cols=177 Identities=18% Similarity=0.115 Sum_probs=145.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+.++..+...++...+.|...+++.+|+++..|+|....+++...|.++..++.+++|+++|| +.|+++.....+.++
T Consensus 211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~ 288 (394)
T COG2814 211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL 288 (394)
T ss_pred chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence 578888889999999999999999999999999999999999999999999999999999999 888888888888877
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
..+.+.+.. . +.+...+..++.|++..........-.++.. +|+ +..+.++
T Consensus 289 ~~l~l~~~~---~-------------------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~------~~~a~sl 339 (394)
T COG2814 289 ALLALTFTG---A-------------------SPALALALLFLWGFAFSPALQGLQTRLARLA-PDA------ADLAGSL 339 (394)
T ss_pred HHHHHHHhc---c-------------------hHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCc------hHHHHHH
Confidence 777766652 1 3455556666677776665555555555522 344 6799999
Q ss_pred HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCc
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTL 242 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~ 242 (562)
+....|+|-.+|..++|.+.+.+|+....++.++..+++.++.+...+
T Consensus 340 ~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 340 NVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988888777655443
No 157
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.21 E-value=7.5e-11 Score=121.42 Aligned_cols=154 Identities=12% Similarity=0.056 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVE-VNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~-~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
|.++.+....++....+++.. .+.|.|.++.+|.+..+.+.+.....++..++.++.|++.|| +|||+.+..+..+..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~ 288 (365)
T TIGR00900 210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRY-FKRMALMTGAIFVIG 288 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHH
Confidence 456666666777777777776 778888888899999999999999999999999999999999 799999988877766
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.++..+. + . +.+.+++..++.|++.+...+...+++.|.+|+++ |++..+
T Consensus 289 ~~~~~~~~~---~------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~ 340 (365)
T TIGR00900 289 LAILVVGLT---P------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRVFG 340 (365)
T ss_pred HHHHHHHhh---c------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHH
Confidence 666655543 1 0 25667778888999999999999999999999877 999999
Q ss_pred HHHHHHhHHHHHHhhhhhhccccc
Q 035554 194 YFYIALNLGCLFSETVLVYAENMG 217 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~ 217 (562)
+++...++|..++|.++|++.+..
T Consensus 341 ~~~~~~~~~~~~g~~~~g~l~~~~ 364 (365)
T TIGR00900 341 AQFSLSHAAWPLGLILAGPLADHL 364 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999987754
No 158
>PRK10504 putative transporter; Provisional
Probab=99.20 E-value=5.9e-10 Score=119.69 Aligned_cols=158 Identities=10% Similarity=-0.056 Sum_probs=126.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.+...+...++...++.......|.|++..+|.+..+.+++.....++..++.++.|+++|| +|||+++..+.++..+
T Consensus 261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~g~~~~~~~~~~~~~~ 339 (471)
T PRK10504 261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR-FGYRRVLVATTLGLAL 339 (471)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHH
Confidence 456666777777777777777788889988899999999999888888888888999999999 7999999999887777
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.+++.+. +. ....+.+.+..++.|++.+...+....+..+.+|+++ ++.++++
T Consensus 340 ~~~~~~~~---~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~ 393 (471)
T PRK10504 340 VSLLFMLV---AL-----------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGNSL 393 (471)
T ss_pred HHHHHHhc---cc-----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchHHH
Confidence 76665543 11 0123334455667788888888888899999998877 8999999
Q ss_pred HHHHHhHHHHHHhhhhhhcccccch
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYW 219 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~ 219 (562)
++...++|..+|+.+++.+.+..++
T Consensus 394 ~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 394 LSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999888665554
No 159
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.20 E-value=4.5e-10 Score=120.04 Aligned_cols=171 Identities=14% Similarity=0.012 Sum_probs=135.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc-ccchHHHHHHH--HH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSY-LGRYLTCVTFQ--AF 111 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~-~Grk~~i~~~~--~~ 111 (562)
|.++......++..++++....+++.|+++ +|++..+++.+.+...++..++.+++|+++||. +++|+...++. ++
T Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 319 (455)
T TIGR00892 241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF 319 (455)
T ss_pred chHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence 456777777778888888888999999875 799999999999999999999999999999973 23343333332 22
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
..++.+++... + +.+.+++.+++.|++.+...++..+++.|.+|+++ +++.
T Consensus 320 ~~l~~ll~~~~---~--------------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~~ 370 (455)
T TIGR00892 320 NGLTHLLCALA---G--------------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSSA 370 (455)
T ss_pred HHHHHHHHHHh---c--------------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------HhhH
Confidence 33333333332 1 36667788889999999999999999999998877 8999
Q ss_pred HHHHHHHHhHHHHHHhhhhhhccccc-chhHHHHHHHHHHHHHHH
Q 035554 192 YSYFYIALNLGCLFSETVLVYAENMG-YWVLGFWICAGCDILAFS 235 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~~~~-~~~~~f~i~~~~~~~~~~ 235 (562)
+++++...++|..++|.++|++.+.. +|+..|++.+++.+++.+
T Consensus 371 ~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 371 VGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 99999999999999999999998876 599999988876665554
No 160
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.19 E-value=3.8e-10 Score=118.07 Aligned_cols=175 Identities=14% Similarity=-0.025 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHH-HHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMG-SLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
..+..+...++...+......+.+.|+++ .|++..+.|++...... ...++.+++|+++|| +|+||.+..+.++.++
T Consensus 209 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~ 286 (390)
T TIGR02718 209 LAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRR-AGLWRTFILGVGLAGS 286 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHH
Confidence 45555556666767777777788889876 79999999998887754 666778999999999 7999999887766533
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCC-CCchhhhhhhhhHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDE-EDPKEKKSKTSFYS 193 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~ 193 (562)
..+....... .. ........+....+.+++.+...+...+...+..++ +. +++.++
T Consensus 287 ~~~~~~~~~~-~~----------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~~ 343 (390)
T TIGR02718 287 LALLWFAQAA-FW----------------LAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDVT 343 (390)
T ss_pred HHHHHHHHHH-cc----------------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHHH
Confidence 3332221111 00 001133334444455666777777777887777665 55 789999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHH
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFS 235 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~ 235 (562)
+++...++|..++|.++|++.+..||+..|++.+++.+++.+
T Consensus 344 ~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 344 AVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988999999887776655543
No 161
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.18 E-value=1.1e-09 Score=117.45 Aligned_cols=178 Identities=16% Similarity=-0.002 Sum_probs=124.3
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHH--------
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTC-------- 105 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i-------- 105 (562)
++.+|...+..++....++.+..++|.|+++.+|++..+.++..+...++..++.+++|+++|| +++|+..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~-~~~~~~~~~~~~~~~ 338 (465)
T TIGR00894 260 SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADF-LKSSKTLSLTAARKI 338 (465)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCcHHHHHHH
Confidence 4678888899999999999999999999999999999999999999999999999999999999 5654321
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhh
Q 035554 106 VTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEK 185 (562)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 185 (562)
..+......+..++... ... ......++...+.+.+.+...+.......|..|. .
T Consensus 339 ~~~~~~~~~~~~~~~~~-~~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~---- 393 (465)
T TIGR00894 339 FNGIGGLGPGIFAYALP-YLS-------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F---- 393 (465)
T ss_pred HHHHHHHHHHHHHHHHH-HcC-------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H----
Confidence 11111111111111111 000 1133334444455555555555555555555442 4
Q ss_pred hhhhhhHHHHHHHHhHHHHHHhhhhhhcccc---cchhHHHHHHHHHHHHHHHHHHh
Q 035554 186 KSKTSFYSYFYIALNLGCLFSETVLVYAENM---GYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 186 ~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~---~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
++...++.+...++|+.++|.+.|++.+. .+|...|.+.++..+++.++...
T Consensus 394 --~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 394 --LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 78999999999999999999999998764 34888898888777776665443
No 162
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.18 E-value=1.2e-08 Score=103.65 Aligned_cols=184 Identities=10% Similarity=-0.042 Sum_probs=121.6
Q ss_pred hHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAF---AGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~---~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
++.|.++++..+.+++. +.-......|.++.+| +...+-|...+|.+.+....+.+-|+.|+ +|-|...+++..+
T Consensus 41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk-~GLR~a~llgt~l 118 (480)
T KOG2563|consen 41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDK-FGLRTALLLGTVL 118 (480)
T ss_pred hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcc-cchHHHHHHHHHH
Confidence 34444444444444333 2222334567777778 77778899999999999999999999999 7999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHH--HHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETA--IFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKT 189 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 189 (562)
..+|..+=.++ +.|.+. +.++ +.+.+-.+.+..+-.+...-+-+..-||++++ |.
T Consensus 119 n~iGa~Ir~is-s~p~v~----------------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra 175 (480)
T KOG2563|consen 119 NGIGAWIRLIS-SLPFVP----------------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RA 175 (480)
T ss_pred HHHHHHHhhhc-cCcccc----------------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hh
Confidence 99998877665 334311 2344 66677777777776665555566778899999 88
Q ss_pred hhHHHHHHHHhHHHHHHhhhhhhcccc------cchhH--HHHHHHHHHHHHHHHHHhcCcc
Q 035554 190 SFYSYFYIALNLGCLFSETVLVYAENM------GYWVL--GFWICAGCDILAFSSLLSGTLR 243 (562)
Q Consensus 190 ~~~~~~~~~~~lg~~~~~~~~~~l~~~------~~~~~--~f~i~~~~~~~~~~~~~~~~~~ 243 (562)
.+-++-..++.+|.+++.++...+..+ .+|.. .|+...++.++.+++..+.+++
T Consensus 176 ~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~ 237 (480)
T KOG2563|consen 176 IATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTK 237 (480)
T ss_pred hhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 887776667677777776665555443 24544 3444444443333333344433
No 163
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.17 E-value=6.4e-10 Score=118.75 Aligned_cols=181 Identities=12% Similarity=-0.038 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHH
Q 035554 38 TLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLL 117 (562)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~ 117 (562)
+...+..+........+..+.+.+ .+++|++..+.++......++..++.+++|+++|| +|||+.+.+++++..++.+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~ 364 (481)
T TIGR00879 287 LGVVLQWFQQFTGINAIMYYSPTI-FENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR-FGRRPLLLIGAAGMAICLF 364 (481)
T ss_pred HHHHHHHHHHHhCCeehHHHHHHH-HHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHH
Confidence 333333333334444444444444 45689999888888889999999999999999999 7999999999888777776
Q ss_pred HHHhhhcccccCCCCCCCCCCcCCCCC-CchHHHHHHHHH-HHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHH
Q 035554 118 GLSFATQSFLLRPHGCGKIGQLCDPHS-PAETAIFYISIY-LFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYF 195 (562)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 195 (562)
++.+...... ++.+ ......+....+ ..+.+.+ ..+....+..|.+|+++ |+++.++.
T Consensus 365 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~------~~~~~~~~ 424 (481)
T TIGR00879 365 VLGILGASFV-------------TGSSKSSGNVAIVFILLFIAFFAMG-WGPVPWVIVSEIFPLSL------RPKGISIA 424 (481)
T ss_pred HHHHHhhccc-------------CCcccchhHHHHHHHHHHHHHHHcc-ccCeehhhhhccCChHH------HHHHHHHH
Confidence 6653211010 0000 001222222222 2223322 34666777799999887 89999999
Q ss_pred HHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 196 YIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 196 ~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
+...++|++++|.+.+++.+..+|++.|++.+++.+++.++.+..
T Consensus 425 ~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~ 469 (481)
T TIGR00879 425 VAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFF 469 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHhee
Confidence 999999999999999999888899999988777766666554443
No 164
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.16 E-value=1.3e-09 Score=113.72 Aligned_cols=166 Identities=8% Similarity=-0.070 Sum_probs=130.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.++.+.+..++...++......++.|++ +.|.+..+.|.+.+...++..+..++.|++.|| +|+|+.+..+.++..+
T Consensus 205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~l~~~~~~~~~ 282 (382)
T PRK11128 205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRR-WSARDLLLLSAICGVV 282 (382)
T ss_pred hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHH
Confidence 56676677677777777777788899996 489999999999998889999999999999999 7999999999888888
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.+++... + +.+.+++..++.|++.+...+....+..+. ++++ +++..++
T Consensus 283 ~~~~~~~~---~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~ 332 (382)
T PRK11128 283 RWGLMGST---T--------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQAL 332 (382)
T ss_pred HHHHHHhh---h--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHHH
Confidence 77666554 1 366777888889999888888888877775 4444 5677887
Q ss_pred HH-HHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHH
Q 035554 195 FY-IALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILA 233 (562)
Q Consensus 195 ~~-~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~ 233 (562)
++ ....+|..++|.++|++.+..|+. .|+..+++.+++
T Consensus 333 ~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~ 371 (382)
T PRK11128 333 YSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPA 371 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHH
Confidence 65 555778899999999999988874 555555544444
No 165
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.16 E-value=1.5e-10 Score=122.87 Aligned_cols=161 Identities=17% Similarity=0.063 Sum_probs=124.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.++.+++..++...+++......+.|.+..++ +..+.+.+.+...++..++.++.|+++|| +|||+++.++.++.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~g~~~~~~~~~~~~~~ 299 (437)
T TIGR00792 222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKK-FGRKILFAGGILLMVL 299 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHH
Confidence 566777777778888877776666666666666 55667777788889999999999999999 7999999999888888
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCc-hhhhhhhhhHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDP-KEKKSKTSFYS 193 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~ 193 (562)
+.+.+.+. +. +.+.+++..++.+++.+...+...++++|..|.++- ..++.++..++
T Consensus 300 ~~~~~~~~---~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 357 (437)
T TIGR00792 300 GYLIFFFA---GS-------------------NLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYS 357 (437)
T ss_pred HHHHHHHc---ch-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHH
Confidence 77766553 11 245566677788999999899999999998775431 11222688999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccch
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYW 219 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~ 219 (562)
+++...++|..+++.+.|++.+..||
T Consensus 358 ~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 358 VRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999988766555
No 166
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.16 E-value=2.4e-10 Score=118.25 Aligned_cols=162 Identities=13% Similarity=0.123 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH--HH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQA--FS 112 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~--~~ 112 (562)
|.++.+.+..++.....+++..+++.|+++++|++..+.+...+.+.++..++.++.|+++||..+||+....... ..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~ 295 (379)
T TIGR00881 216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI 295 (379)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4667777777888888888999999999999999999999999999999999999999999983234433322211 11
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhH
Q 035554 113 IIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192 (562)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 192 (562)
.++....... +. .+.....+..++.|+......+....+..|.+|+++ |+++.
T Consensus 296 ~~~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~ 348 (379)
T TIGR00881 296 IVSLLVYWLN---PA------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGTAA 348 (379)
T ss_pred HHHHHHHhcC---cc------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHHHH
Confidence 1122211111 11 123444455556666555556666778899999888 99999
Q ss_pred HHHHHHHhHHHHHHhhhhhhcccccchhHHH
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMGYWVLGF 223 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f 223 (562)
++++...++|..++|.+.|++.+..||+..|
T Consensus 349 g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 349 GFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 9999999999999999999999988987654
No 167
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.15 E-value=3.2e-09 Score=111.67 Aligned_cols=173 Identities=16% Similarity=-0.041 Sum_probs=129.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.++...+...+.....+......|.|+.+++|++..+.+.......++..++.++.|+++|| +|+|+.+.++.++..+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~ 293 (406)
T PRK15402 215 RRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSR-RPLRSLIRMGLWPMVA 293 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHH
Confidence 455666666666666666677778889988999999999988887888889999999999999 7999999999888877
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.++..+....+ ....++++++.++.++|.+...+......... ++++ |++..+.
T Consensus 294 g~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~~~~ 348 (406)
T PRK15402 294 GLLLAALATVIS------------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTVSAA 348 (406)
T ss_pred HHHHHHHHHHcc------------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHHHHH
Confidence 777766541100 11355567788888999888777666555433 3355 8899999
Q ss_pred HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHH
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILA 233 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~ 233 (562)
++...++|..+|+.+.+++.+..++....+.+.++.++.
T Consensus 349 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 349 MGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 999999999999999999988777665555544444433
No 168
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.13 E-value=1.2e-09 Score=115.20 Aligned_cols=165 Identities=12% Similarity=0.018 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-hhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHH-HHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKS-VLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTC-VTFQAFS 112 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~-~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i-~~~~~~~ 112 (562)
+.+|...+..++....++++.+++|.|+++ ..|.+..+++.......++..++.+++|+++|| ++||+.. ....++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr-~~~r~~~~~~~~~~~ 320 (412)
T TIGR02332 242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDR-LKERKHHTALPYLFA 320 (412)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcc-cCccHHHHHHHHHHH
Confidence 456777788888889999999999999987 357788899999999999999999999999999 7977753 3343344
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhH
Q 035554 113 IIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192 (562)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 192 (562)
.++..+.... + .....+.+..+.++|.....+.......|.+|+++ |+.++
T Consensus 321 ~~~~~~~~~~---~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~a~ 371 (412)
T TIGR02332 321 AAGWLLASAT---D--------------------HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAIAI 371 (412)
T ss_pred HHHHHHHHhc---C--------------------CHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHHHH
Confidence 4333222111 1 11122222233334433333444455566677766 89999
Q ss_pred HHHHHHHhHHHHHHhhhhhhccccc-chhHHHHHHHHH
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMG-YWVLGFWICAGC 229 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~-~~~~~f~i~~~~ 229 (562)
++.+...++|++++|.+.+.+.+.. +|+.+|++.+++
T Consensus 372 g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 372 AVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 9999999999999999999998876 599988876653
No 169
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.12 E-value=1.3e-09 Score=114.42 Aligned_cols=172 Identities=13% Similarity=0.042 Sum_probs=127.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh---CCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVL---RQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~l---g~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
|.++.+.+..++....+.....+.+.|+++.+ +.+....|.+.+...+...++.++.|++.|| +|||+.+.++.++
T Consensus 215 ~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r-~g~~~~l~~~~~l 293 (396)
T TIGR00882 215 RKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINR-IGAKNALLIAGTI 293 (396)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHH
Confidence 34455555555555555566667888888765 5566677888888888889999999999999 7999999999888
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
.+++..+.... + +.+.+++..++.|++..........+..+..+++. +++.
T Consensus 294 ~~l~~~~~~~~---~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~ 344 (396)
T TIGR00882 294 MSVRIIGSSFA---T--------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATI 344 (396)
T ss_pred HHHHHHHHHhc---C--------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEe
Confidence 88877665543 1 25566777888888765554445555666666555 6666
Q ss_pred HHH-HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHH
Q 035554 192 YSY-FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSS 236 (562)
Q Consensus 192 ~~~-~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~ 236 (562)
.+. ++...++|..+++.++|++.+..||+.+|.+.+++..+..+.
T Consensus 345 ~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 345 YLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred ehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 666 677889999999999999999889999999877766555443
No 170
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.11 E-value=3.1e-09 Score=110.96 Aligned_cols=172 Identities=15% Similarity=0.009 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIG 115 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~ 115 (562)
..+..+...++.+.+.+....+++.|+.+.+|++..+.+.+.+...++..++.++.|+++|| +|+|+.+..+..+.+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r-~~~~~~~~~~~~~~~i~ 278 (382)
T PRK10091 200 APWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGR-YSPLRIAAVTDFIIVLA 278 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccc-cCchhHHHHHHHHHHHH
Confidence 34555555555556666666778889988899999999999999999999999999999999 79999999888877777
Q ss_pred HHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccC-CCCCchhhhhhhhhHHH
Q 035554 116 LLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQF-DEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~ 194 (562)
.++..... + ..+...+..++.+++.+...+.......+.. +++. ++.+ .
T Consensus 279 ~~~~~~~~--~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~--~ 328 (382)
T PRK10091 279 LLMLFFFG--G--------------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA--G 328 (382)
T ss_pred HHHHHHHH--h--------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH--H
Confidence 65554321 1 1333444555555655444444443333333 3222 3333 3
Q ss_pred HHHHHhHHHHHHhhhhhhcccc-cchhHHHHHHHHHHHHHHHHHH
Q 035554 195 FYIALNLGCLFSETVLVYAENM-GYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~-~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
.+...++|..+||.++|++.+. .+|+..+.+.++..++......
T Consensus 329 ~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (382)
T PRK10091 329 GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL 373 (382)
T ss_pred HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence 3566789999999999998874 6899999887766655554433
No 171
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.10 E-value=3.8e-09 Score=111.83 Aligned_cols=150 Identities=10% Similarity=-0.096 Sum_probs=110.0
Q ss_pred HHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcc
Q 035554 46 LANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQS 125 (562)
Q Consensus 46 ~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~ 125 (562)
+.....+.+..++|.|+++ .|.+..+.+.+.+...++..++.++.|+++|| +|||+.+..+.++..++.++....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~--- 316 (426)
T PRK12307 242 SIFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADR-IGLKKTFSIGLLMSFLFIFPLFRI--- 316 (426)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHH---
Confidence 3334445567788999886 59999999999999999999999999999999 799999998887766655444332
Q ss_pred cccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHH
Q 035554 126 FLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLF 205 (562)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~ 205 (562)
+. .....+.+..+..+++.....+..+.++.|.+|++. |+++.++.+...++|+.+
T Consensus 317 ~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~~ 372 (426)
T PRK12307 317 PQ------------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGTF 372 (426)
T ss_pred cc------------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHHH
Confidence 11 012222222222233333445666778899999888 899999999999999999
Q ss_pred HhhhhhhcccccchhHHHH
Q 035554 206 SETVLVYAENMGYWVLGFW 224 (562)
Q Consensus 206 ~~~~~~~l~~~~~~~~~f~ 224 (562)
+|.+.+++.+..|+....+
T Consensus 373 gp~~~g~l~~~~g~~~~~~ 391 (426)
T PRK12307 373 NSMAATWLGITMGLGAALT 391 (426)
T ss_pred HHHHHHHHHHcccHHHHHH
Confidence 9999999998888665433
No 172
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=99.10 E-value=8e-08 Score=101.72 Aligned_cols=161 Identities=17% Similarity=0.103 Sum_probs=115.4
Q ss_pred HHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc--cc-chH-HHHHHHHHHHHHHHHHHhhhcccccCCC
Q 035554 56 VNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSY--LG-RYL-TCVTFQAFSIIGLLGLSFATQSFLLRPH 131 (562)
Q Consensus 56 ~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~--~G-rk~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (562)
.....|+++++|+++.+.....+...+- ...-++.|.++|-+ +| ||| -++++.++..++.+.++.. |.
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~---~~---- 81 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALL---PA---- 81 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhc---cc----
Confidence 3455688999999999988766665443 45557999999985 34 444 4456666665555555443 22
Q ss_pred CCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhh
Q 035554 132 GCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLV 211 (562)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~ 211 (562)
...+.....+..++..+|.+......-+++.|....+... |+...++.+....+|+.++..+.|
T Consensus 82 ------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G 145 (433)
T PF03092_consen 82 ------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSG 145 (433)
T ss_pred ------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1123445566777788999999999999999987544421 678889999999999999999999
Q ss_pred hcccccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 212 YAENMGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 212 ~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
.+.+..+++..|.+..++..+..+..+..
T Consensus 146 ~l~~~~~~~~~f~i~~~~~~l~~~~~~~~ 174 (433)
T PF03092_consen 146 PLLDSFGPQGVFLISAALPLLMLIVALFL 174 (433)
T ss_pred hhhhcCCCeEEehHHHHHHHHHHHHHHHh
Confidence 99998899999988876655554443333
No 173
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.09 E-value=3.4e-09 Score=109.39 Aligned_cols=153 Identities=14% Similarity=0.075 Sum_probs=118.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcc-cchHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYL-GRYLTCVTFQAFSI 113 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grk~~i~~~~~~~~ 113 (562)
|..+.+.+..++....++++..++|.|+++ .|++..+.+.+.+.+.++..++.++.|+++|| + +||+.+.++.++.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr-~~~~~~~~~~~~~~~~ 274 (355)
T TIGR00896 197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARR-VKDQRGIVAVLAVLQL 274 (355)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHHHHHHH
Confidence 456666666677778888999999999975 69999999999999999999999999999999 7 56667777777777
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.+.+.+. +. .... +...+.|++.|...|...+...+..++++ + ++...+
T Consensus 275 ~~~~~~~~~---~~--------------------~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~---~--~g~~~~ 325 (355)
T TIGR00896 275 VGLCGLLFA---PM--------------------HGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAA---Q--AAALSA 325 (355)
T ss_pred HHHHHHHHh---hh--------------------hHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHH---H--HHHHHH
Confidence 777666554 21 1111 23467799999988887777776554322 1 578888
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccc
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGY 218 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~ 218 (562)
+.+...++|..++|.+.|++.+..|
T Consensus 326 ~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 326 MAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888889999999999999987654
No 174
>PRK10054 putative transporter; Provisional
Probab=99.09 E-value=1.4e-09 Score=114.02 Aligned_cols=174 Identities=13% Similarity=-0.029 Sum_probs=131.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--hhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKS--VLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFS 112 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~--~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~ 112 (562)
|.++......++..+.+.....+.+.|+.. +.+.+....+.+...+.+......++.|++.|| .++|+.+..+.++.
T Consensus 206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~l~~~~~~~ 284 (395)
T PRK10054 206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNA-ANIRPLMTAGTLCF 284 (395)
T ss_pred ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHcc-CCchhHHHHHHHHH
Confidence 455666666666666666565667777754 345556667777777777777778889999999 79999999998888
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhH
Q 035554 113 IIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192 (562)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 192 (562)
.++...+.+.. .+.+.++++..+.++|.+...|...+++.+..|++. |++.+
T Consensus 285 ~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~~ 336 (395)
T PRK10054 285 VIGLVGFIFSG----------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASYF 336 (395)
T ss_pred HHHHHHHHHcc----------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceehH
Confidence 87776665431 124556667788899998888888889999998877 78888
Q ss_pred HHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
+.++ ...+|..+||.++|++.+..|....|++.+.+..+++++..
T Consensus 337 ~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 337 SAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 8654 56789999999999999999988888887776666665554
No 175
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.09 E-value=2e-09 Score=115.93 Aligned_cols=174 Identities=15% Similarity=0.065 Sum_probs=144.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+.+..++...++.++....+...+|.+.++.+|.+....|++.+++.+|..++.++.+++.+| +++++.+..+.+++++
T Consensus 218 ~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~~~a~ 296 (524)
T PF05977_consen 218 PPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASLLFAL 296 (524)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHHHHHH
Confidence 344444455555566666667778999999999999999999999999999999999999999 7999999999888888
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.+.+++. + +.+...++.++.|++.........+.+-+..|++. ||+.+++
T Consensus 297 ~~~~lal~---~--------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si 347 (524)
T PF05977_consen 297 ALLLLALS---P--------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSI 347 (524)
T ss_pred HHHHHhcc---h--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHH
Confidence 87777765 2 36677778888899888888888888888888888 9999999
Q ss_pred HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
++...+.+..+|.++.|.+.+..|.+..+.+++++.+++.++..
T Consensus 348 ~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 348 YQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888887776665555543
No 176
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.07 E-value=2.8e-09 Score=114.60 Aligned_cols=174 Identities=11% Similarity=-0.027 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchH-------HHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYL-------TCVTF 108 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~-------~i~~~ 108 (562)
..|.+.+..++.....+.+..++|.|+.+++|++..+++.+.+.+.++..++.+++|+++|| +|||+ ...+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~~~r~~~~~r~~~~~~~ 331 (476)
T PLN00028 253 RTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDV-AARRFGMRGRLWALWIV 331 (476)
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHhcCcchhHHHHHHH
Confidence 45556655556666667778889999999999999999999999999999999999999999 68762 22222
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhh
Q 035554 109 QAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSK 188 (562)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 188 (562)
.++..+..+++... .+.+...+..++.+++.+...+...++..+..| ++ |
T Consensus 332 ~~l~~i~~~~~~~~-----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------~ 381 (476)
T PLN00028 332 QTLGGVFCIWLGRA-----------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------L 381 (476)
T ss_pred HHHHHHHHHHhccc-----------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------c
Confidence 22222222222211 123334444555555554444555555555433 44 7
Q ss_pred hhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcC
Q 035554 189 TSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGT 241 (562)
Q Consensus 189 ~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~ 241 (562)
+...++.+...++|+.++|.+.+ .....+|+.+|++.+++.+++.++.++.+
T Consensus 382 g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 382 GVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred hhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 88999988888888888776644 22345799999988887777777665543
No 177
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.07 E-value=1.9e-09 Score=116.09 Aligned_cols=156 Identities=15% Similarity=0.067 Sum_probs=129.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.++...+..++..+++++...++|.|+++.+|.+..+++.......++..++.+++|++.|| +|||+.+.++..+..+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~g~~~~~~ 333 (485)
T TIGR00711 255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK-IDPRKLVTIGLILYAV 333 (485)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHH
Confidence 456666777778888889999999999999999999999999999999999999999999999 7999999999888888
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+..++.+... + ....+.+....++.|+|.+...+.......+.+|+++ |+++.++
T Consensus 334 ~~~~~~~~~~-~------------------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~~~ 388 (485)
T TIGR00711 334 GFYWRAFTFT-P------------------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGSSL 388 (485)
T ss_pred HHHHHhccCC-C------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHHHH
Confidence 7776653211 1 1134556666778899998887777777778788777 8999999
Q ss_pred HHHHHhHHHHHHhhhhhhcccc
Q 035554 195 FYIALNLGCLFSETVLVYAENM 216 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~ 216 (562)
++...++|+.+|+.+.+.+.+.
T Consensus 389 ~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 389 SNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988877653
No 178
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.07 E-value=3.2e-09 Score=112.62 Aligned_cols=161 Identities=19% Similarity=0.132 Sum_probs=135.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.+..++...++..++........+.|.+..+|.+ ...+.......++..++.++.++++|| +|+||++..+.++.++
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r-~gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKR-FGKKKVYIIGLLLAAL 302 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHH-ccceeehhhhHHHHHH
Confidence 67888888888988999888888999999988877 567777888899999999999999999 7999999999999999
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCch-hhhhhhhhHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPK-EKKSKTSFYS 193 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~ 193 (562)
+.+++.+... .+.+.+++...+.|++.+...+...++.+|..+.++-+ .+|..+..++
T Consensus 303 ~~~~~~~~~~---------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s 361 (428)
T PF13347_consen 303 GFLLLFFLGP---------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFS 361 (428)
T ss_pred HHHHHHHHHh---------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHH
Confidence 9888877620 24778888899999999999999999999998865532 1223578889
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccc
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGY 218 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~ 218 (562)
.+.....+|..+++.+.+.+.+..|
T Consensus 362 ~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 362 VNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999998887755444
No 179
>TIGR00895 2A0115 benzoate transport.
Probab=99.06 E-value=1.9e-09 Score=112.41 Aligned_cols=148 Identities=13% Similarity=0.031 Sum_probs=116.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+..+.+....++....++.+..++| ++.+++|.+..+.+...+...++..++.+++|+++|| +|||+.+....+....
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~ 327 (398)
T TIGR00895 250 RITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADR-LGPRVTALLLLLGAVF 327 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHH
Confidence 4455566666677788888888888 6667789999999999999999999999999999999 7999555444333333
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
..++.... . +.+.+++..++.|++.+...+...++..|.+|+++ |++++++
T Consensus 328 ~~~~~~~~---~--------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~ 378 (398)
T TIGR00895 328 AVLVGSTL---F--------------------SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGVGW 378 (398)
T ss_pred HHHHHHHh---h--------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHHHH
Confidence 33322211 1 24556677788899999999999999999999887 9999999
Q ss_pred HHHHHhHHHHHHhhhhhhc
Q 035554 195 FYIALNLGCLFSETVLVYA 213 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l 213 (562)
.+...++|..++|.++|++
T Consensus 379 ~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 379 AIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHhHHhc
Confidence 9999999999999998875
No 180
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.06 E-value=2.6e-09 Score=115.44 Aligned_cols=154 Identities=16% Similarity=0.051 Sum_probs=129.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.+....+..++...++++...++|.|+++.+|+|..++|.....+.++..++.++.|++.|| +|+|+.+..+.++.++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~g~~~~~~ 337 (495)
T PRK14995 259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSR-LGLRLVATGGMALSAL 337 (495)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHH
Confidence 455666677777888888888999999999999999999999999999999999999999999 7999999988888887
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.+++..... ..+.+...+..++.|+|.|...+.......+..|+++ ++.+.++
T Consensus 338 ~~~~l~~~~~--------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~~ 391 (495)
T PRK14995 338 SFYGLAMTDF--------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGAI 391 (495)
T ss_pred HHHHHHHhcC--------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHHH
Confidence 7766554310 1124445667788899999988888888888888877 8899999
Q ss_pred HHHHHhHHHHHHhhhhhhccc
Q 035554 195 FYIALNLGCLFSETVLVYAEN 215 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~ 215 (562)
++...++|+.+|+.+.+.+.+
T Consensus 392 ~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 392 ETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888754
No 181
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.06 E-value=9.7e-09 Score=107.95 Aligned_cols=174 Identities=15% Similarity=0.077 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHH-HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWM-GSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~-~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
.++.+++..++...+......+.+.|+.+++|++..+.+++..... ++..++.+++|+++|| +|||+.+..+.++..+
T Consensus 210 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r-~g~~~~l~~~~~~~~l 288 (402)
T PRK11902 210 GAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVR-LGLYRSLMLFGVLQAV 288 (402)
T ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHH
Confidence 3444444444444333333334556777889999999999886654 4678899999999999 7999988877766655
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHH----HHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIY----LFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
..+.+......+. +.+.++++.. ..+++.+...+....++.+.+|+++
T Consensus 289 ~~l~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------- 340 (402)
T PRK11902 289 SNLGYWVLAVTPK-------------------HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ--------- 340 (402)
T ss_pred HHHHHHHHHhcCC-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH---------
Confidence 5443322111011 2344444443 3445555555555666665555333
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
+++++...++|...++.++|++.+..||+..|.+.+++.+++.++...
T Consensus 341 -~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 341 -YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 344555556777766678999999999999999988877776655433
No 182
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.04 E-value=4.5e-08 Score=99.00 Aligned_cols=85 Identities=12% Similarity=-0.029 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccc----------
Q 035554 147 ETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENM---------- 216 (562)
Q Consensus 147 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~---------- 216 (562)
++..++++.++.|.|.+...+..+++++++.++++ +.+.+++...+..+|..++|.+++.+...
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~ 82 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVA 82 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhh
Confidence 58889999999999999999999999999988877 78999999999999999999999977631
Q ss_pred ------cchhHHHHHHHHHHHHHHHHH
Q 035554 217 ------GYWVLGFWICAGCDILAFSSL 237 (562)
Q Consensus 217 ------~~~~~~f~i~~~~~~~~~~~~ 237 (562)
..|+++|++.+.+..+..+++
T Consensus 83 ~~~~~~~~~~~~yl~ia~~~~~~~i~~ 109 (310)
T TIGR01272 83 TANAEAAKVHTPYLLLAGALAVLAIIF 109 (310)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888885555444333333
No 183
>PRK10133 L-fucose transporter; Provisional
Probab=99.04 E-value=5.9e-09 Score=110.83 Aligned_cols=169 Identities=14% Similarity=0.096 Sum_probs=125.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFA-KSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~-~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
|.++...+..++.....++...+++.|+ ++.+|.++.+++.....+.++..++.+++|++.|| +||||++..+.++..
T Consensus 258 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r-~g~~~~l~~~~~~~~ 336 (438)
T PRK10133 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAM 336 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHH
Confidence 3344445555666677777778888896 56789999999999999999999999999999999 799999998877766
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.++..+. +. . ..+....+.|++.+...|+..+...+.++++. +.+.+
T Consensus 337 ~~~~~~~~~---~~--------------------~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~ 385 (438)
T PRK10133 337 ALCLISAFA---GG--------------------H-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSS 385 (438)
T ss_pred HHHHHHHHc---CC--------------------h-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchh
Confidence 665544432 11 1 22455677899999999999999999876532 34444
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHH
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGY-WVLGFWICAGCDILAFSS 236 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~-~~~~f~i~~~~~~~~~~~ 236 (562)
+.. ...+|+.++|.+.|++.+..| -+..|++..++.+.....
T Consensus 386 l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~ 428 (438)
T PRK10133 386 FIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_pred HHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 443 234678888889999988777 788888777766554443
No 184
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.03 E-value=1.6e-08 Score=105.12 Aligned_cols=166 Identities=6% Similarity=-0.040 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|..+...+...+....++....+.|.|+++++|.++.+.+.+.....++..++.++.|+++|| +|||+.+..+..+..+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 284 (385)
T TIGR00710 206 KMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKK-WGAKSLLRMGLILFAV 284 (385)
T ss_pred chhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHH
Confidence 445555555666667777788888999999999999999999999999999999999999999 7999999988887777
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.+++......+ ......+++...+.|++.+...+.......|..| ++ ++++.++
T Consensus 285 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~ 339 (385)
T TIGR00710 285 SAVLLEITAILG------------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASAL 339 (385)
T ss_pred HHHHHHHHHHhc------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHHH
Confidence 776665441101 0123345555667888888888888888888765 45 7888998
Q ss_pred HHHHHhHHHHHHhhhhhhcccccchhHHHHHH
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYWVLGFWIC 226 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~ 226 (562)
++.....++.+.+.+.+.+.+..+|...+...
T Consensus 340 ~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 371 (385)
T TIGR00710 340 FGTLRLVLGAIVGYLVSLIHGNTAWPMSLSCL 371 (385)
T ss_pred HHHHHHHHHHHHHHHHHhccccChHHHHHHHH
Confidence 77777654444444455665555555444443
No 185
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.01 E-value=8.9e-09 Score=109.06 Aligned_cols=178 Identities=15% Similarity=-0.006 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhccc-------chHHHH-
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLG-------RYLTCV- 106 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-------rk~~i~- 106 (562)
+.+|.+.++.++++.+++.+..++|.|+.+.+|++..+.|+..+.-.+...+..+++|.++||... +||.+-
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~ 337 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT 337 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence 688999999999999999999999999999999999999999999999999999999999999522 223332
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhh
Q 035554 107 TFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKK 186 (562)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 186 (562)
++....++..+.+.+. +. ++ .......+.++..+.|+..++. ..-..|..| ++
T Consensus 338 i~~~~~ai~l~~l~~~---~~------~~--------~~~a~~~l~~~~~~~g~~~~Gf----~~~~~~~ap-q~----- 390 (466)
T KOG2532|consen 338 IAFGGPAVFLLVLAFT---SD------EH--------RLLAVILLTIAIGLSGFNISGF----YKNHQDIAP-QH----- 390 (466)
T ss_pred HHHHHHHHHHHeeeec---CC------Cc--------chHHHHHHHHHHHHcccchhhh----Hhhhhhccc-hH-----
Confidence 3333344444444333 11 00 0001111222222222222221 222222232 33
Q ss_pred hhhhhHHHHHHHHhHHHHHHhhhhhhcccc---cchhHHHHHHHHHHHHHHHHHHhc
Q 035554 187 SKTSFYSYFYIALNLGCLFSETVLVYAENM---GYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 187 ~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~---~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
-+..+++.+...++.+.++|.+.+.+.+. ..|+..|++.+++.+++.+++.+.
T Consensus 391 -a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 391 -AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 47899999999999999999999999843 379999999999888887766554
No 186
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.01 E-value=2e-09 Score=111.08 Aligned_cols=145 Identities=15% Similarity=0.098 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHH-HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWM-GSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~-~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
..+.+++..++.+++++....+++.|+++ +|++..+.+.+.+... ++..++.+++|+++|| +||||.+..+.++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~ 287 (356)
T TIGR00901 210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQP-LNILYALLLFGIVQAL 287 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHH
Confidence 46777777777889999999999999987 9999999998887765 5778999999999999 7999999988888777
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.....+..+... + ++-...+.+.+..+.++.+++.+...+...++..|.+|+++ |++.+++
T Consensus 288 ~~~~~~~~~~~~~----------~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~ 349 (356)
T TIGR00901 288 TNAGFVWLASNGH----------H--DGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMAL 349 (356)
T ss_pred HHHHHHHHHhcCc----------c--cccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHHH
Confidence 6665544311000 0 00000234566777778899999999999999999999999 9999999
Q ss_pred HHHHHh
Q 035554 195 FYIALN 200 (562)
Q Consensus 195 ~~~~~~ 200 (562)
++...|
T Consensus 350 ~~~~~~ 355 (356)
T TIGR00901 350 LSSLSA 355 (356)
T ss_pred HHHHHh
Confidence 887765
No 187
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.00 E-value=7.1e-09 Score=112.35 Aligned_cols=170 Identities=15% Similarity=0.088 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhh------------HHHHHHHHHHHHHHHHHHHhhhcccchHHHHHH
Q 035554 41 LVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASN------------TFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTF 108 (562)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~------------~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~ 108 (562)
....++..+.+|++..+.|.+++ +.|++..+.+. ......++..++.+++++++|| +|||++++++
T Consensus 294 ~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr-~gRR~~l~~~ 371 (502)
T TIGR00887 294 AGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDI-IGRKPIQLMG 371 (502)
T ss_pred HHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcchhHHHHH
Confidence 34445566788898888888886 57876543221 1223344556677889999999 7999999988
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhh
Q 035554 109 QAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSK 188 (562)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 188 (562)
.++.+++.+++.+... +. . ....+.+..+...++.....+....+..|.+|++. |
T Consensus 372 ~~~~~~~~~~l~~~~~-~~-----------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~------R 426 (502)
T TIGR00887 372 FFILTVLFFVLGFAYN-HL-----------------S-THGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY------R 426 (502)
T ss_pred HHHHHHHHHHHHHHHH-hc-----------------c-hhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH------H
Confidence 8777776655554311 00 0 01111111112222222334566777899999988 9
Q ss_pred hhhHHHHHHHHhHHHHHHhhhhhhcccc----------cchhHHHHHHHHHHHHHHHHH
Q 035554 189 TSFYSYFYIALNLGCLFSETVLVYAENM----------GYWVLGFWICAGCDILAFSSL 237 (562)
Q Consensus 189 ~~~~~~~~~~~~lg~~~~~~~~~~l~~~----------~~~~~~f~i~~~~~~~~~~~~ 237 (562)
+++.++.+...++|++++|.+.+++.+. .++...|++.+++.+++.+..
T Consensus 427 ~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 485 (502)
T TIGR00887 427 STAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT 485 (502)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988763 234556666665555554433
No 188
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.99 E-value=1.6e-09 Score=110.92 Aligned_cols=145 Identities=23% Similarity=0.295 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCC-hhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQT-NAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s-~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
.+|.++...++..+.++....+++.|+.+++|++ ..+.+...+...+...++.++.|+++|| +|+|+..........+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~ 285 (352)
T PF07690_consen 207 VLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDR-FGRRRRLLIAILLLIL 285 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHH
Confidence 3455666666667788889999999999999999 7899999999999999999999999999 7998888888777777
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.+.+.+.... .+....++..++.|++.+...+...++..|.+|+++ |++..++
T Consensus 286 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~ 339 (352)
T PF07690_consen 286 GALGLLLLPFS--------------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFGL 339 (352)
T ss_dssp HHHHHCCSHHH--------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHHH
T ss_pred HHHHHHHHHHh--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHH
Confidence 77666554211 135566667788899999999999999999998888 9999999
Q ss_pred HHHHHhHHHHHHh
Q 035554 195 FYIALNLGCLFSE 207 (562)
Q Consensus 195 ~~~~~~lg~~~~~ 207 (562)
++...++|+.++|
T Consensus 340 ~~~~~~~~~~igP 352 (352)
T PF07690_consen 340 FNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC
Confidence 9999999999987
No 189
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.99 E-value=8.8e-09 Score=108.24 Aligned_cols=170 Identities=11% Similarity=0.052 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Q 035554 37 GTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGL 116 (562)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~ 116 (562)
++...+..+.....+.....++|.|+++..+ ++.+.+++.+...++...+..+.+++.||+++.++.+..+.++..++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 288 (400)
T PRK11646 210 FVTYVLTLTGYYMLAVQVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSM 288 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 3333333333333334455678899887666 677888888877766665555556666553676777777777777777
Q ss_pred HHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHH
Q 035554 117 LGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFY 196 (562)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 196 (562)
+++... + +.+.+.+...+.+++.+...|...+++.|..|+++ |++.+++++
T Consensus 289 ~~l~~~---~--------------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~ 339 (400)
T PRK11646 289 FPIGMV---S--------------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSR 339 (400)
T ss_pred HHHHHh---h--------------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHH
Confidence 666554 1 24455566677788888888999999999999888 999999999
Q ss_pred HHHhHHHHHHhhhhhhccccc---c-hhHHHHHHHHHHHHHHHH
Q 035554 197 IALNLGCLFSETVLVYAENMG---Y-WVLGFWICAGCDILAFSS 236 (562)
Q Consensus 197 ~~~~lg~~~~~~~~~~l~~~~---~-~~~~f~i~~~~~~~~~~~ 236 (562)
...++|..+||.++|++.+.. + ....|++..+..+++.+.
T Consensus 340 ~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 340 LGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 999999999999999998753 2 345555555555444444
No 190
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.98 E-value=2.1e-08 Score=107.89 Aligned_cols=162 Identities=12% Similarity=0.006 Sum_probs=112.3
Q ss_pred HHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 035554 51 FAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRP 130 (562)
Q Consensus 51 ~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (562)
++.+..+.|.+ .+++|.+....++......+...++.+++|+++|| +|||+.++.+.++.+++.+++..... +.
T Consensus 287 ~~~~~~~~p~i-~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~r~~~i~~~~~~~v~~~~l~~~~~-~~--- 360 (479)
T PRK10077 287 INVVLYYAPEI-FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFY-TQ--- 360 (479)
T ss_pred hhHHHHHHHHH-HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHhHHHHHHHHHHHHHHHh-cC---
Confidence 33444444444 45688887777777777788889999999999999 79999999999988888877654411 00
Q ss_pred CCCCCCCCcCCCCCCchHHHHHHHHHHHHHhccc-chhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhh
Q 035554 131 HGCGKIGQLCDPHSPAETAIFYISIYLFALGIGA-PEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETV 209 (562)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~ 209 (562)
. .......+..+.+++.+. ..|....++.|.+|+++ |+++.++.+...++|..+++.+
T Consensus 361 --------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~ 419 (479)
T PRK10077 361 --------------A-PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWT 419 (479)
T ss_pred --------------c-ccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 0 112233334444444433 34677899999999888 9999999999888888887555
Q ss_pred hh------hcccccchhHHHHHHHHHHHHHHHHHHh
Q 035554 210 LV------YAENMGYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 210 ~~------~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
.+ ++.+..+|+..|++.++..+++.++.+.
T Consensus 420 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (479)
T PRK10077 420 FPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWK 455 (479)
T ss_pred hHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHh
Confidence 44 4445678888888877665555554443
No 191
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.97 E-value=2.2e-08 Score=105.52 Aligned_cols=185 Identities=14% Similarity=-0.003 Sum_probs=127.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+..|++.+..++...++.+...++|.|+++.+. ............+...+..|++|+|+|| +|+||++.++.++.++
T Consensus 252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADR-iG~~~vl~~~~i~~~i 328 (462)
T PRK15034 252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDK-FGGVRVTLINFIFMAI 328 (462)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHh-cCchHHHHHHHHHHHH
Confidence 467888888888888888898899999988653 3333333444567888899999999999 7999999999887776
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCC----------C---
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEE----------D--- 181 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~----------~--- 181 (562)
+....... .|. ....+++.+.+..+...+..|.-..+...++.+.+|++ +
T Consensus 329 ~~~~~~l~--lp~---------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~ 391 (462)
T PRK15034 329 FSALLFLT--LPG---------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQ 391 (462)
T ss_pred HHHHHHHH--hcc---------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhH
Confidence 66443332 121 01234666666666655666666667777777777641 0
Q ss_pred --chhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccc-cchhHHHHHHHHHHHHHHHHHHh
Q 035554 182 --PKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENM-GYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 182 --~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~-~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
...++.-+...++......+|+.+-|.+.+...+. .++...|+...+..+++.++-+.
T Consensus 392 ~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 392 AQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred HhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 01112356777888888888888888777766554 45888888888777777666443
No 192
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.97 E-value=1.4e-08 Score=121.28 Aligned_cols=164 Identities=16% Similarity=0.031 Sum_probs=132.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChh-hhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNA-EASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~-~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
+.++..++..++.....+....+++.|+++.+|++.. +.+++.+...++..++.++.|+++|| +++++++.++.++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~ 310 (1146)
T PRK08633 232 RVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGR-HIELGLVPLGALGLA 310 (1146)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceEccchhHHHHHHH
Confidence 4556666666666677777888899999999999999 99999999999999999999999999 799999988888777
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.+++.+.. +.+.++++.++.|++.+...+...+++.+..|++. |+++++
T Consensus 311 ~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~~ 361 (1146)
T PRK08633 311 LSLFLLPTAP-----------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVLA 361 (1146)
T ss_pred HHHHHHHHhh-----------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhhH
Confidence 7776665541 25567777888899999988899999999999888 999999
Q ss_pred HHHHHHhHHHHHHhhhhhhccc-ccchhHHHHHHHH
Q 035554 194 YFYIALNLGCLFSETVLVYAEN-MGYWVLGFWICAG 228 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~-~~~~~~~f~i~~~ 228 (562)
+++...++|.++++.+++.+.. .+++...|++.+.
T Consensus 362 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~ 397 (1146)
T PRK08633 362 ANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL 397 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999999888877776643 2345555554443
No 193
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=98.97 E-value=5.6e-07 Score=95.14 Aligned_cols=363 Identities=16% Similarity=0.130 Sum_probs=204.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhh-hhhHHHHH----HHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAE-ASNTFSRW----MGSLYLSSLMGAFLSDSYLGRYLTCVTFQA 110 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~-~~~~~~~~----~~~~~~~~~~~G~laDr~~Grk~~i~~~~~ 110 (562)
....+.+...+.....+..+.....+....++.+... .+...... .+...+..++-|.++|| +|||..+.....
T Consensus 22 ~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~-~grk~~L~~~~~ 100 (463)
T KOG2816|consen 22 HLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDR-YGRKVVLLLPLF 100 (463)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhh-hhhhhhHHHHHH
Confidence 3444444444444444444466666666665554433 33333333 57888899999999999 699999999888
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
...+..+.+.+. .+++++ ..-..-+.+.......++++|...+++ |..
T Consensus 101 ~~~l~~~~~~~~-------------------------~~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~~------R~~ 148 (463)
T KOG2816|consen 101 GTILPALCLLFQ-------------------------GYWFFL-LLGLSGGFSAIFSVGFAYVADISSEEE------RSS 148 (463)
T ss_pred HHHHhHHHHHHH-------------------------HHHHhh-hcccccchhhhhhhhhhheeeccchhH------HHH
Confidence 777777666554 233333 111122334456777888999887777 999
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCC-CchhHHHHHHHHHHhhhc
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSG-NPLSRFSQVIVASLRKIN 269 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 269 (562)
.+++.+.....+..++|.+++++.+..|.-..|.++.+..++..+..+...|+...++.+. .+.. +
T Consensus 149 ~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~-------------~ 215 (463)
T KOG2816|consen 149 SIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLR-------------E 215 (463)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccccccc-------------c
Confidence 9999999899999999999999999999999999999988887776555444332221111 0000 0
Q ss_pred ccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhcc
Q 035554 270 LEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMN 349 (562)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 349 (562)
. .+ .+...+..++.. ..... ...++ ..+.++... .......-....+
T Consensus 216 ~-~~--~~~~~~~~~~~~--~~~~~-~~~~r-----------------------~~l~l~l~~----~~~~~~~~~~~~~ 262 (463)
T KOG2816|consen 216 L-TP--GSLDSSHVADAF--QSLTK-VGPDR-----------------------LLLLLLLVA----FLSSLPEAGGASD 262 (463)
T ss_pred c-CC--Ccccchhhhhhh--hhhcc-cCCCc-----------------------cchHHHHHH----HHHHHHHhcCcee
Confidence 0 00 000000000000 00000 00000 000000000 0000000000000
Q ss_pred CCC-c---ccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035554 350 TGV-S---NFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLK 425 (562)
Q Consensus 350 ~~~-~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~ 425 (562)
..+ + .++........+ ....-........+..|...+... ..+.+..|++...++.++.++.+
T Consensus 263 ~~~~yl~~~f~w~~~~~s~~-~~~~~~~~~i~~l~~~~~l~~~l~-------~~~~i~lGl~~~~~~~~~~af~~----- 329 (463)
T KOG2816|consen 263 VLLLYLKAKFGWNKKEFSDL-LSLVSILGIISQLLLLPLLSSILG-------EKRLISLGLLSEFLQLLLFAFAT----- 329 (463)
T ss_pred EEEEEEeeecCcCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh-------hhhHhhHHHHHHHHHHHHHHHhc-----
Confidence 000 0 001111000000 001111112222222333334322 22267889999999998888873
Q ss_pred hhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 035554 426 YASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTT 503 (562)
Q Consensus 426 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~ 503 (562)
+. |+.-...+.........|...+++...+.++.+|+..++.....++.+.+++.+.+.+...+.
T Consensus 330 ------------~~-w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t~ 394 (463)
T KOG2816|consen 330 ------------ET-WMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALTL 394 (463)
T ss_pred ------------cc-hhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 22 334444555666677889999999999999999999999999999999999999998877553
No 194
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.97 E-value=4.7e-08 Score=102.51 Aligned_cols=167 Identities=6% Similarity=-0.055 Sum_probs=120.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.++..++..++...+.++...+.+.++.+++|++..+.+.+...+.++..++.++.|++.|| .++ +.+..+..+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r-~~~-~~l~~~~~~~~~ 293 (394)
T PRK10213 216 PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKR-SVK-LALAGAPLVLAV 293 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhc-cch-hHHHHHHHHHHH
Confidence 455555555566666677766776454456789999999999999999999999999999999 454 444444444333
Q ss_pred H-HHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 115 G-LLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 115 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
. .++.... + +.+.+.+..++.|++.+...+...+++.+..|+ + +++..+
T Consensus 294 ~~~~l~~~~---~--------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~------~~~~~~ 343 (394)
T PRK10213 294 SALVLTLWG---S--------------------DKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q------AEKAGS 343 (394)
T ss_pred HHHHHHHHh---h--------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c------HHHHHH
Confidence 3 3332222 1 255666777888999999989888888887763 3 345566
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHH
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILA 233 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~ 233 (562)
++....++|..+||.++|++.+..|++..+...++...+.
T Consensus 344 ~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 344 IQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence 6677778999999999999999889888888776654433
No 195
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.95 E-value=2.5e-08 Score=103.58 Aligned_cols=151 Identities=7% Similarity=-0.045 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|..+...+..++...+.+....+.+.++.+++|++..+.+.......++..++.++.|+++|| +||||.+..+..+..+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~ 272 (377)
T PRK11102 194 KRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRR-VGALNMLRFGLWIQFI 272 (377)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHH
Confidence 344555555556666667777777888888899999999999999999999999999999999 7999999988776544
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
..+.+......+ ...+.+.++..+.+.+.+...+.......|..| ++ +++..++
T Consensus 273 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~ 326 (377)
T PRK11102 273 MGIWLVVSALLD-------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSL 326 (377)
T ss_pred HHHHHHHHHHHh-------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHH
Confidence 333322221001 123444444444555555555555566666655 45 6777777
Q ss_pred HHHHH-hHHHHHHhhhhhh
Q 035554 195 FYIAL-NLGCLFSETVLVY 212 (562)
Q Consensus 195 ~~~~~-~lg~~~~~~~~~~ 212 (562)
++... .+|..+++.+++.
T Consensus 327 ~~~~~~~~g~~~g~~~~~~ 345 (377)
T PRK11102 327 AGTLRFGIGAIVGALLSLA 345 (377)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 55443 4666677665443
No 196
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.94 E-value=1.8e-08 Score=120.13 Aligned_cols=184 Identities=13% Similarity=-0.063 Sum_probs=135.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.++...+..++.++.++++..++|.|+++.+|.+..+.|++.+.+.++..++.++.|+++|+ .++++.+..+.++..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~-~~~~~~~~~~~~~~~~ 303 (1140)
T PRK06814 225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEG-RITLLYVPIGALLMGL 303 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceeeeeehHHHHHHHH
Confidence 577777887888888888888999999999999999999999999999999999999999998 5777766666555555
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcC-CCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLC-DPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
+.+.+.+... ....+ .. . .... .-....+.+.++++.++.|++.+...+...+++.+.+|++. |+++++
T Consensus 304 ~~~~l~~~~~-~~~~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~g 373 (1140)
T PRK06814 304 FGLDLAFASS-SVPAE-PA-Q-LKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVIA 373 (1140)
T ss_pred HHHHHHhccc-ccccc-cc-c-ccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeeeH
Confidence 4443333100 00000 00 0 0000 00000235667778888999999999999999999999999 999999
Q ss_pred HHHHHHhHHHHHHhhhhhhccc-ccchhHHHHHHHHH
Q 035554 194 YFYIALNLGCLFSETVLVYAEN-MGYWVLGFWICAGC 229 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~-~~~~~~~f~i~~~~ 229 (562)
.++...++|..+++.+.+.+.. ..++...|++.+++
T Consensus 374 ~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 374 ANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 9999999999999999888863 34666666554443
No 197
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.93 E-value=8.4e-08 Score=95.18 Aligned_cols=171 Identities=16% Similarity=0.076 Sum_probs=138.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+..|.+.+-.-+.++.+|.+..|+|.++.+ -|+|..++|++.+...+......+...++++|.-.+|+..+...+++.+
T Consensus 208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~ 286 (395)
T COG2807 208 PLAWQVTLFMGLQSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLV 286 (395)
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 467888888889999999999999999885 6999999999999999999999999999999877889999999999999
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
|.+.+.+. |. +. .+...+++|+|.|..+|....++.+..++.+ + -++..++
T Consensus 287 G~~G~~~~---P~-------------------~~--~~lw~~llG~G~G~~F~laL~li~~rs~~a~--~---Aa~LSgm 337 (395)
T COG2807 287 GLVGLLLA---PG-------------------QL--PILWALLLGLGQGGAFPLALTLILLRSSDAA--I---AAALSGM 337 (395)
T ss_pred HHHHHHHh---hh-------------------hH--HHHHHHHHhCccchHHHHHHHHHHhhcCChH--H---HHHHHHH
Confidence 99888876 43 12 2222578899999999999999998765533 2 4566777
Q ss_pred HHHHHhHHHHHHhhhhhhccccc-chhHHHHHHHHHHHHHHH
Q 035554 195 FYIALNLGCLFSETVLVYAENMG-YWVLGFWICAGCDILAFS 235 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~-~~~~~f~i~~~~~~~~~~ 235 (562)
-+....+=+.+||.+.|++.|.. +|+..+..-+.+.++..+
T Consensus 338 aQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i 379 (395)
T COG2807 338 AQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLI 379 (395)
T ss_pred hhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 77777888889999999998865 688776655554444333
No 198
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.92 E-value=5.4e-08 Score=100.97 Aligned_cols=166 Identities=10% Similarity=-0.028 Sum_probs=114.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccch---HHHH-HHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRY---LTCV-TFQA 110 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk---~~i~-~~~~ 110 (562)
|.+|.+....++....+|++..|+|.|+++ .|++.. .+.......+... +..++++|| ..|| +... ...+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~-~~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDR-VARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHH-hhhhhhHHHHHHHHHH
Confidence 677889899999999999999999999965 678764 5555444444444 446888888 5654 3322 2333
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
+.++......... +....++...+.+++.....+...++.+|.+|++. |++
T Consensus 266 ~~a~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------rgt 316 (368)
T TIGR00903 266 LIAAFFLALAFEL-----------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------HGK 316 (368)
T ss_pred HHHHHHHHHHHcc-----------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------cCc
Confidence 3333333332221 12233444555667777777788899999999999 999
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHH
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSL 237 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~ 237 (562)
+.++.+...++|+..+|.+.+.+.. +....|.+.++..+++.+..
T Consensus 317 ~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 317 AAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887763 66667766666555555544
No 199
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.92 E-value=2.5e-08 Score=100.99 Aligned_cols=176 Identities=13% Similarity=0.085 Sum_probs=146.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.+...+++.++.+=+...+......|-...+|++..+.........+...+++++.|+|.|| +|-|+++.+++++..+
T Consensus 252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~~~ 330 (438)
T COG2270 252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVILSI 330 (438)
T ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHHHH
Confidence 477778888888887888888888999999999999999999889999999999999999999 7999999999998877
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
..+...+.. ...-+.+.-++.|+..|......-++.++.+|+++ -++.|++
T Consensus 331 ~~~~~~~~~-----------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFgl 381 (438)
T COG2270 331 AALYLIFLE-----------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGL 381 (438)
T ss_pred HHHHHHHcc-----------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeeh
Confidence 776655541 12335555567899999999999999999999988 7899999
Q ss_pred HHHHHhHHHHHHhhhhhhccccc-chhHHHHHHHHHHHHHHHHHHhc
Q 035554 195 FYIALNLGCLFSETVLVYAENMG-YWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~-~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
|+.....+..+||++.+.+.+.. +-|..+...+++..+++++++..
T Consensus 382 yaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v 428 (438)
T COG2270 382 YALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRV 428 (438)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEee
Confidence 99999999999999999887754 46777776666666666655433
No 200
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.89 E-value=6.1e-07 Score=89.78 Aligned_cols=152 Identities=13% Similarity=0.048 Sum_probs=109.9
Q ss_pred HhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCC
Q 035554 64 SVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPH 143 (562)
Q Consensus 64 ~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (562)
++.|++..+++.++.+....+.+..++.|.++|| +||||..+..+++++++.+..-. +
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~-~Grk~~cl~~cily~~scl~k~~----~----------------- 119 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADR-YGRKKACLLFCILYSLSCLTKHS----S----------------- 119 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHhc----c-----------------
Confidence 5789999999999999999999999999999999 79999999999999888765432 2
Q ss_pred CCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCC-chhhhhhhhhHHHHH-HHHhHHHHHHhhhhhhcccccch--
Q 035554 144 SPAETAIFYISIYLFALGIGAPEPALATFGADQFDEED-PKEKKSKTSFYSYFY-IALNLGCLFSETVLVYAENMGYW-- 219 (562)
Q Consensus 144 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~-~~~~lg~~~~~~~~~~l~~~~~~-- 219 (562)
++..++++|++-|++......+..+.......+++ |++. .+.-++... ..+.+-+..+..++-++.+..+.
T Consensus 120 ---~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~--L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~ 194 (354)
T PF05631_consen 120 ---NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEW--LSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGP 194 (354)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH--HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCC
Confidence 48889999999999999988888776643322211 2111 233333322 23334455555566666665544
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCc
Q 035554 220 VLGFWICAGCDILAFSSLLSGTL 242 (562)
Q Consensus 220 ~~~f~i~~~~~~~~~~~~~~~~~ 242 (562)
..+|..+.++.+++.++.....+
T Consensus 195 vaPF~~a~~~l~~~~~~I~~~W~ 217 (354)
T PF05631_consen 195 VAPFDAAIVLLAVAAVLILKTWP 217 (354)
T ss_pred cchHHHHHHHHHHHHHHHHhccc
Confidence 77899888888877776554444
No 201
>PRK09848 glucuronide transporter; Provisional
Probab=98.88 E-value=2.1e-08 Score=107.06 Aligned_cols=163 Identities=12% Similarity=0.113 Sum_probs=124.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.++...+..++...+++......+.|+++.+|.+....++......++..++.++.++++|| +|+|+++.++.++.++
T Consensus 228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r-~g~~~~~~~g~~~~~i 306 (448)
T PRK09848 228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVAR-IGKKNTFLIGALLGTC 306 (448)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHH
Confidence 567777777777788888877777888888889877666555555567778899999999999 7999999999988888
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCch-hhhhhhhhHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPK-EKKSKTSFYS 193 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~ 193 (562)
+.+++.+. +. .+.+.+++..++.++|.+...+...++.+|..|.++-+ .+|.++..++
T Consensus 307 ~~~~~~~~---~~------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~ 365 (448)
T PRK09848 307 GYLLFFWV---SV------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYS 365 (448)
T ss_pred HHHHHHHc---Cc------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHH
Confidence 87766553 21 13556667778889999999999999999988755421 1122578889
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccch
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYW 219 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~ 219 (562)
.++....+|..+++.+.+.+.+..||
T Consensus 366 ~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 366 LFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999988876544443
No 202
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.87 E-value=1.7e-08 Score=108.53 Aligned_cols=165 Identities=14% Similarity=0.041 Sum_probs=121.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.++.++...++.+.+.+......+.|++..++ +....+.+.+...++..++.++.++++|| +|+|+++.++.++.++
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKS-LSRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHH
Confidence 778888888888888877777776666655554 55566777777778889999999999999 7999999988887776
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCC-chhhhhhhhhHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEED-PKEKKSKTSFYS 193 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~ 193 (562)
+.+.+.+....+ ....+.+++..++.+++.+...+...++++|..|.++ +..+|..+..++
T Consensus 309 ~~~~~~~~~~~~------------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s 370 (473)
T PRK10429 309 SCGVLLLMGLAA------------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYS 370 (473)
T ss_pred HHHHHHHHhccC------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHH
Confidence 665544321001 1135566667778889999999999999999987543 112222466888
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccch
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYW 219 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~ 219 (562)
+..+...+|..+++.+.|++.+..||
T Consensus 371 ~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 371 VQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 89999999999999988887654444
No 203
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.87 E-value=4.2e-08 Score=102.67 Aligned_cols=77 Identities=10% Similarity=0.005 Sum_probs=62.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhh
Q 035554 45 GLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFA 122 (562)
Q Consensus 45 ~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~ 122 (562)
.+...+......+.+.|+++++|++..+.+.+.....++..++.++.|++.|| +|||+.+.++..+..++.+.+.+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~ 289 (392)
T PRK10473 213 TLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGI-FKPRTLMLTSQVLFLAAGITLALS 289 (392)
T ss_pred HHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344455566778888999999999999999999999999999999999 799999999988888877776654
No 204
>PRK09669 putative symporter YagG; Provisional
Probab=98.85 E-value=1.4e-08 Score=108.27 Aligned_cols=161 Identities=13% Similarity=0.035 Sum_probs=110.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.++.++...++...+........+.|.+..++. ....+.+.....+...++.++.++++|| +|+|+.+..+.++.++
T Consensus 229 ~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gk~~~~~~~~~~~~~ 306 (444)
T PRK09669 229 SQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLR-PDLATLFLVTGMIAGLFGALLSERLLGK-FDRVRAFKWTIVAFVI 306 (444)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhheeeeeecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHH
Confidence 4555555555555555544444444444444443 3344455556677788888999999999 7999999988776665
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCc--hhhhhhhhhH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDP--KEKKSKTSFY 192 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~--~~~~~r~~~~ 192 (562)
+.....+. +. .+.+.+++..++.|++.+...+...++++|..|.++. ++++ .+..+
T Consensus 307 ~~~~~~~~---~~------------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~-~g~~~ 364 (444)
T PRK09669 307 LSALIFFI---PP------------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRL-DGLVF 364 (444)
T ss_pred HHHHHHHh---Cc------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCc-chHHH
Confidence 44333332 11 1356677777889999999999999999999875442 2222 46778
Q ss_pred HHHHHHHhHHHHHHhhhhhhcccccch
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMGYW 219 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~~~ 219 (562)
+.+++..++|..+++.++|++.+..||
T Consensus 365 s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 365 STNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 899999999999999999887665555
No 205
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.84 E-value=1.4e-07 Score=98.86 Aligned_cols=161 Identities=11% Similarity=-0.148 Sum_probs=119.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhc
Q 035554 45 GLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQ 124 (562)
Q Consensus 45 ~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~ 124 (562)
.+.+.+.......++.|+++.+|.++.+.|.+.....++..++.++.|++.|| .++|+++..+..+ .+..+++.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~-~~~~~~~~~g~~~-~~~~~~~~~~-- 290 (393)
T PRK11195 215 TLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTL-ETVLRVLPAGILM-GLVVLLMALQ-- 290 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccchHHHHHHH-HHHHHHHHHH--
Confidence 34455556666677888988999999999999999999999999999999999 6999988877533 3333333322
Q ss_pred ccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHH
Q 035554 125 SFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCL 204 (562)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~ 204 (562)
+ +.+...+..++.|++.+...++..+.+.+..|++. +++++.++.+...++|..
T Consensus 291 -~--------------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~ 344 (393)
T PRK11195 291 -H--------------------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAML 344 (393)
T ss_pred -h--------------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHH
Confidence 1 24555666778899988888888888776543321 158899999999999999
Q ss_pred HHhhhhhhcccccchhHHHHHHHHHHHHHHHH
Q 035554 205 FSETVLVYAENMGYWVLGFWICAGCDILAFSS 236 (562)
Q Consensus 205 ~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~ 236 (562)
++..+.+.+ +.+|-+..+.+..++.+++..+
T Consensus 345 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 375 (393)
T PRK11195 345 LMLGLYSLL-VKLGVPVVAVIVGFGLLVALAM 375 (393)
T ss_pred HHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHH
Confidence 999888866 4567777776666555555444
No 206
>PRK11043 putative transporter; Provisional
Probab=98.84 E-value=3e-07 Score=96.53 Aligned_cols=159 Identities=8% Similarity=-0.011 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Q 035554 37 GTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGL 116 (562)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~ 116 (562)
.+...+...+....++....+.|.|+++ +|++..+.+.......++..++.++++++.|| +|+|+.+....+..+++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r-~~~~~~~~~~~~~~~~~~ 282 (401)
T PRK11043 205 YLGNVLIFAACSAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQK-WGGEQLLPWLLVLFAVSV 282 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHH
Confidence 3333334444455666667778888764 79999999988888888889999999999999 799998776665555544
Q ss_pred HHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHH
Q 035554 117 LGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFY 196 (562)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 196 (562)
+.+......+. .+.+.+++...+.+++.+...|...+...|..| ++ ++++.++++
T Consensus 283 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~ 337 (401)
T PRK11043 283 IAIWLASLLSH------------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA------TGKAAALQN 337 (401)
T ss_pred HHHHHHHHhcc------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc------ChHHHHHHH
Confidence 43322211011 124445556667788888888888887777765 45 789999999
Q ss_pred HHHhHHHHHHhhhhhhcccccchhHH
Q 035554 197 IALNLGCLFSETVLVYAENMGYWVLG 222 (562)
Q Consensus 197 ~~~~lg~~~~~~~~~~l~~~~~~~~~ 222 (562)
.....++..++.+.+.+.+.......
T Consensus 338 ~~~~~~~~~~~~~~g~l~~~~~~~~~ 363 (401)
T PRK11043 338 TLQLGLCFLASLLVSALISTPLLTTG 363 (401)
T ss_pred HHHHHHHHHHHHHHHHccCCChhHHH
Confidence 88888888888888888764444433
No 207
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=98.80 E-value=6.8e-10 Score=119.91 Aligned_cols=190 Identities=14% Similarity=0.117 Sum_probs=2.9
Q ss_pred HHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhccccc
Q 035554 49 LAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLL 128 (562)
Q Consensus 49 ~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (562)
...++.......-+.+.|+++.+++|++.+.+.++..+..++..+..+| -.|-|.+.+|.+++++|.+++++-+.+-.
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~-~hrprwig~g~~~~~~g~~l~~lPhf~~~- 93 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGR-GHRPRWIGIGALLMGLGSLLFALPHFLSG- 93 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeeecHHHHHHHHHHHhccHhhcC-
Confidence 6666777777778899999999999999999999999999999999999 58888899999999999998876322111
Q ss_pred CCCCCCCC----------CCcC-------------------CCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCC
Q 035554 129 RPHGCGKI----------GQLC-------------------DPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDE 179 (562)
Q Consensus 129 ~~~~~~~~----------~~~~-------------------~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 179 (562)
++.++.. .+.| +........+++++.++.|+|.....+...+++=|-.++
T Consensus 94 -~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~ 172 (539)
T PF03137_consen 94 -PYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSK 172 (539)
T ss_dssp -----------------------------------------------------------SSS------------------
T ss_pred -CCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccc
Confidence 1111110 1223 111112356788899999999999999999988887776
Q ss_pred CCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhccc---------------------c-cchhHHHHHHHHHHHHHHHHH
Q 035554 180 EDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAEN---------------------M-GYWVLGFWICAGCDILAFSSL 237 (562)
Q Consensus 180 ~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~---------------------~-~~~~~~f~i~~~~~~~~~~~~ 237 (562)
++ -...+++.+....+|.++|-++++...+ + ..||.+|.+.+++.++..+-+
T Consensus 173 ~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl 246 (539)
T PF03137_consen 173 KN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPL 246 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 5688899999999999999888876532 1 148889998888777766666
Q ss_pred HhcCcceeec
Q 035554 238 LSGTLRYRHF 247 (562)
Q Consensus 238 ~~~~~~~~~~ 247 (562)
+...++.+..
T Consensus 247 ~~FPk~lp~~ 256 (539)
T PF03137_consen 247 FFFPKKLPGT 256 (539)
T ss_dssp ----------
T ss_pred HcCCccCCCc
Confidence 6655555443
No 208
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.80 E-value=6.8e-08 Score=103.67 Aligned_cols=176 Identities=19% Similarity=0.167 Sum_probs=148.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchH--HHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYL--TCVTFQAFS 112 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~--~i~~~~~~~ 112 (562)
+.++.+.+...+..++++.-..+++.|.+ ..|++..+++.+.++..+...++.++.|+++|+ ...++ +..++.++.
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~-~~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADK-PGIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCc-cccchHHHHHHHHHHH
Confidence 57778888888889999999999999988 789999999999999999999999999999999 56434 334555555
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhH
Q 035554 113 IIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192 (562)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 192 (562)
.++.+.++++. +++.++....+.|+..|......+..+.|..+.++ ...++
T Consensus 376 gl~~~~~p~~~-----------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~ 426 (509)
T KOG2504|consen 376 GLARLFLPFAT-----------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAY 426 (509)
T ss_pred HHHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHH
Confidence 55555555541 36778888889999999998888889999999988 89999
Q ss_pred HHHHHHHhHHHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHHHHhcC
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMGY-WVLGFWICAGCDILAFSSLLSGT 241 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~~-~~~~f~i~~~~~~~~~~~~~~~~ 241 (562)
++......++..++|.+.|++.+..+ |...|+.+.++.+++...++...
T Consensus 427 Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 427 GLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 99999999999999999999988776 99999999999888887766554
No 209
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.80 E-value=9.5e-07 Score=96.22 Aligned_cols=202 Identities=12% Similarity=0.109 Sum_probs=150.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+.+..++....+....+.+.......-+.+.|+++.++.|++.+.+.++..+...+..+.+-| .-|-|.+-+|++++++
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r-~HrPr~Ig~G~~~m~l 174 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSR-GHRPRWIGIGLVLMGL 174 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccc-cCccceeeechhHHHH
Confidence 556666666666665666888888888999999999999999999999999999999999999 5888899999999999
Q ss_pred HHHHHHhhhcccccCCCCCCCC----------------------------CCcCC---CCCCchHHHHHHHHHHHHHhcc
Q 035554 115 GLLGLSFATQSFLLRPHGCGKI----------------------------GQLCD---PHSPAETAIFYISIYLFALGIG 163 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~---~~~~~~~~~~~~~~~l~g~g~g 163 (562)
+.++.++-+.+.. ++.++.. .+.|. .++...+.+++++.++.|+|..
T Consensus 175 gsll~alPHf~~~--~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~T 252 (735)
T KOG3626|consen 175 GSLLFALPHFFSG--PYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGAT 252 (735)
T ss_pred HHHHHhChHHhcC--cchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCC
Confidence 9998876422111 1111110 01110 1111234467788899999999
Q ss_pred cchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccc-------------------cchhHHHH
Q 035554 164 APEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENM-------------------GYWVLGFW 224 (562)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~-------------------~~~~~~f~ 224 (562)
.+.+...+++=|-...++ -...+++.+....+|.++|.++++++.+. ..||..|+
T Consensus 253 pi~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFL 326 (735)
T KOG3626|consen 253 PIFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFL 326 (735)
T ss_pred CCccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHH
Confidence 998888888877666555 56889999999999999999888776421 13899999
Q ss_pred HHHHHHHHHHHHHHhcCccee
Q 035554 225 ICAGCDILAFSSLLSGTLRYR 245 (562)
Q Consensus 225 i~~~~~~~~~~~~~~~~~~~~ 245 (562)
+++.+..+..+.+++..+..+
T Consensus 327 i~g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 327 ICGALLLFSAVPLFFFPKELP 347 (735)
T ss_pred HHHHHHHHHHHHHHhCcccCc
Confidence 999888887777776655443
No 210
>TIGR00898 2A0119 cation transport protein.
Probab=98.78 E-value=7.9e-08 Score=104.18 Aligned_cols=131 Identities=17% Similarity=0.075 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHH
Q 035554 79 RWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLF 158 (562)
Q Consensus 79 ~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (562)
...+....+.+++++++|| +|||+.+.++.++..++.+++.+. +. ...+...+..++.
T Consensus 363 ~~~~~~i~~~~~~~~l~dr-~grr~~~~~~~~~~~~~~l~~~~~---~~------------------~~~~~~~~~~~~~ 420 (505)
T TIGR00898 363 ISGLVELPAKLITLLLIDR-LGRRYTMAASLLLAGVALLLLLFV---PV------------------DLYFLRTALAVLG 420 (505)
T ss_pred HHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHc---CC------------------CchHHHHHHHHHH
Confidence 4456667788899999999 799999999988888777766654 21 0123344444555
Q ss_pred HHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 159 ALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 159 g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
+++.+...+....+..|.+|++. |+++.++.+....+|+.++|.+.+ +.+ .++...+++.+++.+++.++.+
T Consensus 421 ~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~~~~~~~~~~~~~~~~~~~~~ 492 (505)
T TIGR00898 421 KFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LGE-KWLFLPLVLFGGLALLAGILTL 492 (505)
T ss_pred HHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HHH-HHHhhHHHHHHHHHHHHHHHHH
Confidence 66666677888899999999888 999999999999999999999888 433 4566677766665555555444
Q ss_pred h
Q 035554 239 S 239 (562)
Q Consensus 239 ~ 239 (562)
+
T Consensus 493 ~ 493 (505)
T TIGR00898 493 F 493 (505)
T ss_pred c
Confidence 3
No 211
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.78 E-value=2.6e-07 Score=96.56 Aligned_cols=181 Identities=9% Similarity=-0.013 Sum_probs=133.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|+....++..++...+.-....+.+.|+++.-|.+....+.+.+...++-...-.+.+++-.| +|-|+++.++.+.+++
T Consensus 207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-~g~~~ll~~a~~~~~v 285 (400)
T PF03825_consen 207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR-FGIKWLLLLALVAYAV 285 (400)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHH
Confidence 345555555566666666677888999987655777788887777778778888899999999 7999999999999888
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
=..+.+.... |. ........++..+.|+..|....+...++.+..|++. |+++-++
T Consensus 286 R~~l~a~~~~-~~-----------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l 341 (400)
T PF03825_consen 286 RWLLYAYFSD-PW-----------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGL 341 (400)
T ss_pred HHHHHHHhcC-Cc-----------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHH
Confidence 7777666511 11 0012223344567899999999999999999999999 8999999
Q ss_pred HHHH-HhHHHHHHhhhhhhcccccchh------HHHHHHHHHHHHHHHHHHhc
Q 035554 195 FYIA-LNLGCLFSETVLVYAENMGYWV------LGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 195 ~~~~-~~lg~~~~~~~~~~l~~~~~~~------~~f~i~~~~~~~~~~~~~~~ 240 (562)
++.. ..+|..+|..++|++.+.+|-+ ..+.++++..++..+++++.
T Consensus 342 ~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 342 YSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 7765 4799999999999999876533 44555555544444444433
No 212
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=98.75 E-value=1.2e-07 Score=93.77 Aligned_cols=171 Identities=13% Similarity=0.017 Sum_probs=114.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh--CCCh----hhhhh-------------HHHHHHHHHHHHHHHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVL--RQTN----AEASN-------------TFSRWMGSLYLSSLMGAFL 94 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~l--g~s~----~~~~~-------------~~~~~~~~~~~~~~~~G~l 94 (562)
.|..+++....|...+.||++.-......+.+. |.++ .+.-. =..+..+...-+.++.|++
T Consensus 325 rkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~i 404 (528)
T KOG0253|consen 325 RKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVI 404 (528)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHH
Confidence 356677778888889999998876666555432 1111 11111 0223356667788999999
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhh
Q 035554 95 SDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGA 174 (562)
Q Consensus 95 aDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~ 174 (562)
.|| +||||++..+++++.+..+++..+-+ +. ....++..+|+.+.. .+.+.+.+-.
T Consensus 405 ver-lGRKkTMal~l~~f~iflfll~~c~~-rn------------------~~tvllf~arafisg----~fqvaYvYtP 460 (528)
T KOG0253|consen 405 VER-LGRKKTMALSLILFGIFLFLLTTCKT-RN------------------AYTVLLFTARAFISG----AFQVAYVYTP 460 (528)
T ss_pred HHH-hcchhHHHHHHHHHHHHHHHHHHhcC-cc------------------hhHHHHHHHHHHHhc----hheEEEEecC
Confidence 999 89999999999999888877765511 11 123345556655433 3445678899
Q ss_pred ccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHH
Q 035554 175 DQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSS 236 (562)
Q Consensus 175 ~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~ 236 (562)
|.+|+.. |+.+.+.......+|+.++|.++.. .+ .+-..+..+...+.+++.+.
T Consensus 461 EVyPTav------RatgvGtcSsmaRIggI~~p~iA~~-~e-~s~sl~i~vy~~~~ilagIa 514 (528)
T KOG0253|consen 461 EVYPTAV------RATGVGTCSSMARIGGIFSPVIAMR-AE-LSTSLPIFVYGALFILAGIA 514 (528)
T ss_pred cccchhh------hhcchhhhhhHHhhhhhhhhHHHHH-hc-cceeehHHHHHHHHHHHHHH
Confidence 9999988 9999999999999999999988832 22 23333444444444444444
No 213
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.75 E-value=6.2e-08 Score=100.12 Aligned_cols=142 Identities=18% Similarity=0.090 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|..+.+.+..++.....+.+..+++.|+++.+|++..+++.+...+.+...++.+++|+++|| +|||+.+..+..+...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~ 303 (366)
T TIGR00886 225 RHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDR-LGGARKLLMSFLGVAM 303 (366)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHh-hccchhHHHHHHHHHH
Confidence 345666666666667778888999999999999999999999999999999999999999999 7999988887776666
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+..++.+... + ..+.+.+++...+.+++.|...+...++..+.+| ++ +++..++
T Consensus 304 ~~~~~~~~~~-~------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~------~g~~~g~ 357 (366)
T TIGR00886 304 GAFLVVLGLV-S------------------PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RA------TGAVSGL 357 (366)
T ss_pred HHHHHHhcCC-C------------------cchHHHHHHHHHHHHHHhccccchhhhcchhhch-hh------cccHHHH
Confidence 6655544311 0 0024444455555566666666677778888776 45 7899999
Q ss_pred HHHHHhHHH
Q 035554 195 FYIALNLGC 203 (562)
Q Consensus 195 ~~~~~~lg~ 203 (562)
.+...++|+
T Consensus 358 ~~~~~~~g~ 366 (366)
T TIGR00886 358 VGAIGNLGG 366 (366)
T ss_pred HHHhccCCC
Confidence 888877763
No 214
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.73 E-value=2.7e-07 Score=97.29 Aligned_cols=166 Identities=14% Similarity=0.041 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSV-LRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~-lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
|..+...+..++......+...+++.|.++. .+.+....+...+.+..+..++.+++|+++|| +++||++.++.++.+
T Consensus 232 ~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r-~~~~~~l~i~~~~~~ 310 (410)
T TIGR00885 232 RHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISY-LAAHKVLMAYAIIGM 310 (410)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHH
Confidence 3445555556665555557778889998653 24455555666777778889999999999999 799999988888777
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
+..++..+. +. . .......+.|+..+.++|...+...+..+++. ......
T Consensus 311 ~~~ll~~~~---~~--------------------~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~~s~~ 360 (410)
T TIGR00885 311 ALCLGSIFA---GG--------------------H-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KYGAAG 360 (410)
T ss_pred HHHHHHHHc---CC--------------------h-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhhHHH
Confidence 777666654 11 1 23456667788888889999999999887554 222222
Q ss_pred HHHHHHhHHHHHHhhhhhhccccc------chhHHHHHHHHHHHHH
Q 035554 194 YFYIALNLGCLFSETVLVYAENMG------YWVLGFWICAGCDILA 233 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~------~~~~~f~i~~~~~~~~ 233 (562)
+ ... -+|+++.|.+.|++.|.. +.+..|+++.+|.+..
T Consensus 361 l-~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 404 (410)
T TIGR00885 361 L-VMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVI 404 (410)
T ss_pred H-HHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHHH
Confidence 2 222 399999999999999843 5888999888877644
No 215
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.73 E-value=3.7e-07 Score=95.58 Aligned_cols=151 Identities=13% Similarity=0.058 Sum_probs=103.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhc
Q 035554 45 GLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQ 124 (562)
Q Consensus 45 ~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~ 124 (562)
++...+........+.|+++.+|.+..+.+++.....++..++.++.+++.|| +|++.... .....++.+.......
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~~--~~~~~~~~~~~~~~~~ 293 (394)
T PRK11652 217 IGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTLMWQS--VICCLLAGLLMWIPGW 293 (394)
T ss_pred HHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 33333344444556778888899999999998888888888899999999999 57433332 2222222222111100
Q ss_pred ccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHH
Q 035554 125 SFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCL 204 (562)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~ 204 (562)
.. ....+.+.++..+.+++.+...|...+...|.+| ++ ++...++.+...++|+.
T Consensus 294 -~~-----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~lg~~ 348 (394)
T PRK11652 294 -FG-----------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YL------AGTAGALLGGLQNIGSG 348 (394)
T ss_pred -hc-----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cc------chHHHHHHHHHHHHHHH
Confidence 00 0124556777788899999999999999988876 34 67888999989999999
Q ss_pred HHhhhhhhcccccchhHHH
Q 035554 205 FSETVLVYAENMGYWVLGF 223 (562)
Q Consensus 205 ~~~~~~~~l~~~~~~~~~f 223 (562)
+++.+++++.+...+....
T Consensus 349 ~~~~~~~~~~~~~~~~~~~ 367 (394)
T PRK11652 349 LAALLSAMLPQTGQFSLGL 367 (394)
T ss_pred HHHHHHHHccCCchHHHHH
Confidence 9999999887654444333
No 216
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.73 E-value=1.6e-07 Score=98.00 Aligned_cols=159 Identities=18% Similarity=0.148 Sum_probs=128.5
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
.|.+.++++..++...++....+.+..|.+..+|.++............+..++.++...|++| +|+|+++..+.++.+
T Consensus 235 Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~~ 313 (467)
T COG2211 235 NRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLLA 313 (467)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHHH
Confidence 3666777777777777777777778888888899998888888888888888989999999999 799999999999999
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCC--chhhhhhhhh
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEED--PKEKKSKTSF 191 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~--~~~~~~r~~~ 191 (562)
++.+++.+. |. .+.+++++..++.++|.+...+...++++|..+-++ .+.|+ -|..
T Consensus 314 i~~~~~~f~---~~------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~-eGi~ 371 (467)
T COG2211 314 VGYLLLYFT---PA------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRR-EGIV 371 (467)
T ss_pred HHHHHHHhh---cC------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCc-hhhH
Confidence 999998887 21 247788888889999999999999999999876554 23333 4667
Q ss_pred HHHHHHHHhHHHHHHhhhhhhccc
Q 035554 192 YSYFYIALNLGCLFSETVLVYAEN 215 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~~ 215 (562)
++.+....=+|.+++..+.|++..
T Consensus 372 ~s~~tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 372 YSGMTFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777788887776666543
No 217
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.72 E-value=4.3e-07 Score=95.60 Aligned_cols=189 Identities=16% Similarity=-0.002 Sum_probs=124.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 32 GGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
.+++..+..+...++..++-.-........+-..-|++..++.++.....+...++.+++.++.|| +|||+.++++..+
T Consensus 266 ~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~-~gRRpLll~~~~~ 344 (485)
T KOG0569|consen 266 TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR-LGRRPLLLISLSL 344 (485)
T ss_pred chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHH
Confidence 344566666666666665544444444455555679999999999999999999999999999999 7999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhccc-chhhhhhhhhccCCCCCchhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGA-PEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
..+..+++......... ......+..+++.++..++.+. ..|...-+.+|++|.+. |..
T Consensus 345 ~~~~~~~~~~~~~l~~~--------------~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R~a 404 (485)
T KOG0569|consen 345 MAVALLLMSIALFLSNS--------------FGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------RSA 404 (485)
T ss_pred HHHHHHHHHHHHHHHHH--------------hhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------hHH
Confidence 88888777665332220 0000011223444443333322 35677788899999888 889
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCc
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTL 242 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~ 242 (562)
+.++-...+.+...+-.+.-..+.+..|- ..|.+..+..++..+..+...|
T Consensus 405 a~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lP 455 (485)
T KOG0569|consen 405 AQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLP 455 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCc
Confidence 99887777777777666666666665553 3444444444444444443333
No 218
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.52 E-value=1.1e-06 Score=90.77 Aligned_cols=174 Identities=14% Similarity=0.074 Sum_probs=138.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhC---CChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLR---QTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg---~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
|.+|.+.+........|+..-.-.+.|.+..+. .++...|.+.+...+.-.+.-.++.++.+| +|.|+.++++..+
T Consensus 220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i 298 (412)
T PF01306_consen 220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVI 298 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHH
Confidence 678877777766666777766668888886543 344567888888888888888899999999 8999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
+.+=..+++++ + +.+.+.+...+-++-.+....+..-++++.+|++- ..+.
T Consensus 299 ~~iRi~~~~~~---~--------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sAt~ 349 (412)
T PF01306_consen 299 MAIRIIGSGFA---T--------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SATL 349 (412)
T ss_dssp HHHHHHHHHT-------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HHHH
T ss_pred HHHHHHHHhhh---c--------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HHHH
Confidence 98888887776 2 37788899999999999999999999999998766 5677
Q ss_pred HHH-HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 192 YSY-FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 192 ~~~-~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
+.+ ++.+..+|..+.+.++|++.+..|++..|++.+.+.++..++-.
T Consensus 350 y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~ 397 (412)
T PF01306_consen 350 YLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISA 397 (412)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHhe
Confidence 777 56788899999999999999999999999877766655555433
No 219
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.48 E-value=3.8e-06 Score=90.33 Aligned_cols=185 Identities=10% Similarity=-0.027 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhh----hhhHHHHHHHHHHHHHHHHHH----HhhhcccchHHH--
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAE----ASNTFSRWMGSLYLSSLMGAF----LSDSYLGRYLTC-- 105 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~----~~~~~~~~~~~~~~~~~~~G~----laDr~~Grk~~i-- 105 (562)
.+..+++...+.+..+.-+.+.++.|.++..+.+... .+++.+...+...+.+++..+ +.||..+.+...
T Consensus 273 ~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~ 352 (475)
T TIGR00924 273 AYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKF 352 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Confidence 3445555556666777777888888888765544322 667777777777777777554 444311223333
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhh
Q 035554 106 VTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEK 185 (562)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 185 (562)
.+|.++.+++.+.+.+..... +.+...+.+++++..++.++|.....|...++..+..|++.
T Consensus 353 ~~G~~l~~~~~~~~~~~~~~~--------------~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~---- 414 (475)
T TIGR00924 353 TLGMLFCGASFLTFAASIWFA--------------DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL---- 414 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhc--------------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH----
Confidence 677888887877766531100 01112468889999999999999999999999999999888
Q ss_pred hhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 186 KSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 186 ~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
|++.+++++....+|..+++.+.....+..+|...|...++..++..++++..
T Consensus 415 --~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (475)
T TIGR00924 415 --MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALM 467 (475)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888877666678877776666555555544443
No 220
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.45 E-value=9.8e-06 Score=70.51 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHH
Q 035554 401 RVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALS 480 (562)
Q Consensus 401 ~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~ 480 (562)
.+..+.++..++.+..... .+.+......++.+++.+...+..+.+..|..|++.|++.+++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (141)
T TIGR00880 30 VLLVGLFIFVLSTAMFALS-----------------SNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLM 92 (141)
T ss_pred HHHHHHHHHHHHHHHHHHh-----------------ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHH
Confidence 4455555555555554432 34556677889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 035554 481 MSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCA 542 (562)
Q Consensus 481 ~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~ 542 (562)
++...+|..+++.+.+.+.+. .++...|.+.+++.++..+..+...
T Consensus 93 ~~~~~~g~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (141)
T TIGR00880 93 SAGIALGPLLGPPLGGVLAQF----------------LGWRAPFLFLAILALAAFILLAFLL 138 (141)
T ss_pred HHhHHHHHHHhHHhHHHHhcc----------------cchHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999888765431 1234566666666666655555443
No 221
>PRK11462 putative transporter; Provisional
Probab=98.43 E-value=1.8e-05 Score=84.69 Aligned_cols=160 Identities=12% Similarity=0.075 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.+..++...++..............|.+..+|. ....+.+.+.+.++..++.+++++++|| +|+|+++..+..+..+
T Consensus 228 k~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r-~gkk~~~~~~~~~~~~ 305 (460)
T PRK11462 228 DQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDW-KCKVTIFWWTNALLAV 305 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHH
Confidence 4555555555555555555555555566655554 3345567778888899999999999999 7999988765554444
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCC--chhhhhhhhhH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEED--PKEKKSKTSFY 192 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~--~~~~~~r~~~~ 192 (562)
..++..+. |. .....+++..++.|++.+...+...++.+|..+.++ .+.|+ .+..+
T Consensus 306 ~~~~~~~~---~~------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~-~g~~~ 363 (460)
T PRK11462 306 ISLAMFFV---PM------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRL-TGISF 363 (460)
T ss_pred HHHHHHHh---ch------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCc-hHHHH
Confidence 33333332 11 112234444556677777777777888888776433 22222 34556
Q ss_pred HHHHHHHhHHHHHHhhhhhhcccccc
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMGY 218 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~~ 218 (562)
+.......+|..+++.++|++.+..|
T Consensus 364 a~~~f~~Klg~alg~~i~g~iL~~~G 389 (460)
T PRK11462 364 AGTLFVLKLGLAFGGALIGWMLAYGG 389 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 77778888888888888777654333
No 222
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.42 E-value=1.3e-07 Score=96.61 Aligned_cols=152 Identities=16% Similarity=0.120 Sum_probs=116.2
Q ss_pred cccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchh
Q 035554 360 ASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSI 439 (562)
Q Consensus 360 ~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (562)
+.++....+...++.|+.+.+ .+|++| .+.++.|..+..++++..++. ...
T Consensus 71 Gll~~vf~v~~~i~sPl~gyL----adryNR--------~~v~~vG~~iW~~Av~~~~fs-----------------~~F 121 (493)
T KOG1330|consen 71 GLLQTVFIVVFMIASPLFGYL----ADRYNR--------KRVIAVGIFIWTLAVFASGFS-----------------NHF 121 (493)
T ss_pred cchhHHHHHHHHHHHHHHHHH----HhhcCc--------ceEEeeHHHHHHHHHHHHHHH-----------------HHH
Confidence 455555566666777777733 345543 346788999999999888776 345
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchh
Q 035554 440 FWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGH 519 (562)
Q Consensus 440 ~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~ 519 (562)
|.++++=.+.|+||+...|...+++.+..|...||+..++++++...|+.+|....+.+... ..+
T Consensus 122 wq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~---------------~~~ 186 (493)
T KOG1330|consen 122 WQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL---------------TFW 186 (493)
T ss_pred HHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccC---------------ccc
Confidence 77778899999999999999999999999999999999999999999999997766554432 123
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhh
Q 035554 520 LDRFFFLSATVTAMNLGVFVVCARRYKSISLQKQEG 555 (562)
Q Consensus 520 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (562)
|++.|...++++++.+++..++.++-+++..++.+.
T Consensus 187 Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~ 222 (493)
T KOG1330|consen 187 WRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDG 222 (493)
T ss_pred eEEEEEeehHHHHHHHHHHHhhccCccccccccccc
Confidence 577888889999888888887777666554444443
No 223
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.39 E-value=1e-05 Score=82.48 Aligned_cols=164 Identities=17% Similarity=0.115 Sum_probs=132.3
Q ss_pred HHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhccccc
Q 035554 49 LAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLL 128 (562)
Q Consensus 49 ~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (562)
+++++=-..+=+|--+.||.+..++.-+......+..++-.+.|++..|..++|++-..++.+.+++..+..+++...
T Consensus 222 ~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~-- 299 (403)
T PF03209_consen 222 LAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLG-- 299 (403)
T ss_pred HHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 333333334446778889999999999999999999999999999998658899998899999999888877774322
Q ss_pred CCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhh
Q 035554 129 RPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSET 208 (562)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~ 208 (562)
+.+.+..+.+++|++.|.+....-+..-|+.++++ .+..++.+.....+...++..
T Consensus 300 ------------------~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~A~Glg~~ 355 (403)
T PF03209_consen 300 ------------------SPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAIARGLGTF 355 (403)
T ss_pred ------------------cchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999988899999988777 789999999999988888888
Q ss_pred hhhhccc----------ccchhHHHHHHHHHHHHHHHHHH
Q 035554 209 VLVYAEN----------MGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 209 ~~~~l~~----------~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
++|.+.| ..+|..+|.+-++.++++..++.
T Consensus 356 ~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 356 LGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 8876543 23677888888877776666543
No 224
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=0.00026 Score=74.16 Aligned_cols=102 Identities=15% Similarity=0.107 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHH
Q 035554 77 FSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIY 156 (562)
Q Consensus 77 ~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (562)
..+-+....+.+++++.+.|+ +|.|..+.++...+..-.+..... +-+.++++-.
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~-i~~K~~lv~ga~~y~~f~~gfl~~------------------------N~y~~yfssa 110 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNF-LGPKWALVIGATCYAAFPLGFLFP------------------------NSYYLYFSSA 110 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHH-hhHHHHHHHHhHHHHHHHHHHHhc------------------------chHHHHHHHH
Confidence 556677778888999999999 899999999988877655554442 3667888999
Q ss_pred HHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhh
Q 035554 157 LFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETV 209 (562)
Q Consensus 157 l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~ 209 (562)
+.|+|.+..+.-.-.++++..+++. +.+..++.....+.+..+|..+
T Consensus 111 llG~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Ggi~ 157 (461)
T KOG3098|consen 111 LLGFGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGGII 157 (461)
T ss_pred HhhhhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhhHh
Confidence 9999999988888888888766555 6677777666666666655443
No 225
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.37 E-value=1e-05 Score=81.83 Aligned_cols=166 Identities=13% Similarity=0.109 Sum_probs=125.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.++.-.+..|+.--.=.....+++.|+.+..|.+..+++...+.+..+.+++..++-++-.| +-..|.+.+.++..++
T Consensus 236 ~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~-~~~~k~Laf~a~~~il 314 (422)
T COG0738 236 KHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSR-IKPEKYLAFYALIAIL 314 (422)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHH
Confidence 556666666666655556677889999999899999999999999999999999999999999 7999999988776666
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
-.+...++. ...-+.+.++.|+.++..+|++.+...+..|++.+ .+++
T Consensus 315 l~~~~~l~~------------------------g~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts-----~~s~--- 362 (422)
T COG0738 315 LLLAVALIG------------------------GVVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS-----VGSG--- 362 (422)
T ss_pred HHHHHHHhc------------------------ChHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc-----ccce---
Confidence 555555541 13344556678999999999999999999995542 2222
Q ss_pred HHHHHhHHHHHHhhhhhhcccccchhHHHH-HHHHHHHHH
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYWVLGFW-ICAGCDILA 233 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~-i~~~~~~~~ 233 (562)
.-...-+|+++-|.+-|++.|..+-...+. ++.+|.+..
T Consensus 363 ~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 363 LLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred eeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 222345899999999999999888776665 455554433
No 226
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.37 E-value=3e-05 Score=75.03 Aligned_cols=166 Identities=8% Similarity=0.005 Sum_probs=108.8
Q ss_pred HHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccC
Q 035554 50 AFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLR 129 (562)
Q Consensus 50 ~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~ 129 (562)
..|..-. ....+++.+|+|.+|...+-....++..++ ++.|.+.|+ +|.+.++.+|.+...+|+.++..+-+ .
T Consensus 17 t~Y~Fs~-yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~-~gp~~~l~iG~~~~~~GY~~~~l~~~--~-- 89 (250)
T PF06813_consen 17 TTYTFSA-YSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDR-FGPWVVLLIGAVLGFVGYGLLWLAVS--G-- 89 (250)
T ss_pred cccchhh-hhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHh--C--
Confidence 3344432 345578899999999999999999999876 789999999 79999999999999999988877621 0
Q ss_pred CCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhh
Q 035554 130 PHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETV 209 (562)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~ 209 (562)
.......|.+.+..++.+.+.+....+......+-|| ++ ||.+.++.-....+++.+-..+
T Consensus 90 ------------~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~------RG~vvgilk~~~GLSaai~t~i 150 (250)
T PF06813_consen 90 ------------RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RS------RGTVVGILKGFFGLSAAIFTQI 150 (250)
T ss_pred ------------ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cc------cCceehhhhHHHHhHHHHHHHH
Confidence 1112346666666667667766655555555557787 46 7899888666666655554434
Q ss_pred hhhcccccchhHHHHHHHHHHHHHHHHHHhcC
Q 035554 210 LVYAENMGYWVLGFWICAGCDILAFSSLLSGT 241 (562)
Q Consensus 210 ~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~ 241 (562)
...+.+.-.-...+.++....+++++...+.+
T Consensus 151 ~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr 182 (250)
T PF06813_consen 151 YSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVR 182 (250)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHHhhhee
Confidence 43333322223333444444444444444433
No 227
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.32 E-value=2.6e-05 Score=82.35 Aligned_cols=169 Identities=14% Similarity=0.007 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.++...+..++....++......|.|+++.+|++..+.++.......+..++..+.+.+.++ .+++|.+.....+..+
T Consensus 218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~i 296 (413)
T PRK15403 218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKD-PTEPRFIWRAVPIQLV 296 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchhHHHHHHHHHHH
Confidence 567777777777788888888888999999999999999998877788888877777776655 3555554444444444
Q ss_pred HHHHHHhhhc-ccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 115 GLLGLSFATQ-SFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 115 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
+..++..... .+. ..+..+++.++.++|.+...|+.....- .+.+.+ ++++.+
T Consensus 297 g~~l~~~~~~~~~~-------------------~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~~-----~G~a~a 350 (413)
T PRK15403 297 GLALLIVGNLLWPH-------------------VWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNLP-----KGTVSA 350 (413)
T ss_pred HHHHHHHHHHHccc-------------------cHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCCC-----CcHHHH
Confidence 4444333210 011 2334567888888998888888775332 332222 567778
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHH
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDI 231 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~ 231 (562)
+++.....+...++...+++... +-.++|.+..++..
T Consensus 351 ~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~ 387 (413)
T PRK15403 351 SLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAG 387 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHH
Confidence 87888888888888888888654 44666665554443
No 228
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.28 E-value=1.8e-05 Score=75.28 Aligned_cols=153 Identities=14% Similarity=0.095 Sum_probs=92.6
Q ss_pred HHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCc
Q 035554 60 LFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQL 139 (562)
Q Consensus 60 ~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (562)
.|+-++.|+...+.|.++-+.....+++..+.|-|+|| .|||+..+..++.+ .+.++.-..|
T Consensus 61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDk-qGRKracvtycitY----iLsCiTKhSp------------- 122 (454)
T KOG4332|consen 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCITY----ILSCITKHSP------------- 122 (454)
T ss_pred eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhh-hccccceeeehHHH----HHHHHhhcCC-------------
Confidence 45667789999999988877777777777889999999 79999876655444 4555542222
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcccchhhhhhhh-hccCCCCCchhhhhhhhhHHH-HHHHHhHHHHHHhhhhhhccccc
Q 035554 140 CDPHSPAETAIFYISIYLFALGIGAPEPALATFG-ADQFDEEDPKEKKSKTSFYSY-FYIALNLGCLFSETVLVYAENMG 217 (562)
Q Consensus 140 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~-~~~~~~lg~~~~~~~~~~l~~~~ 217 (562)
++-.++++|.+-|+..+..+.+..+.. +|.-+.++-.+.+ ...-++= ....+.+-+.++...+-.+.++.
T Consensus 123 -------qYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~FeqqW-ls~TFskA~ffgNglvAiiaGlfgn~lvd~~ 194 (454)
T KOG4332|consen 123 -------QYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQQW-LSVTFSKAVFFGNGLVAIIAGLFGNLLVDTF 194 (454)
T ss_pred -------ceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCChHhh-hhHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 355689999999999988777766644 3332221111110 0011111 11223334444444555555544
Q ss_pred --chhHHHHHHHHHHHHHHHHHH
Q 035554 218 --YWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 218 --~~~~~f~i~~~~~~~~~~~~~ 238 (562)
|-..+|-.+++..+++..+.+
T Consensus 195 slGPVAPFdAAacfLaigmAvil 217 (454)
T KOG4332|consen 195 SLGPVAPFDAAACFLAIGMAVIL 217 (454)
T ss_pred ccCCCCchHHHHHHHHHHHHHHH
Confidence 456677766666666655544
No 229
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.28 E-value=3.5e-05 Score=76.06 Aligned_cols=156 Identities=19% Similarity=0.191 Sum_probs=112.4
Q ss_pred HHHHHHHhhHHHHHHHHHHhhCCCh--hhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhh
Q 035554 46 LANLAFAGVEVNMVLFAKSVLRQTN--AEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFAT 123 (562)
Q Consensus 46 ~~~~~~~~~~~~~~~y~~~~lg~s~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~ 123 (562)
.............+.+..+ ++.+. ...++..+.+.+...++.++.|+++|| .|||+.+..+.....++.+.+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~ 90 (338)
T COG0477 13 LLGLDLGLLSPALPLLLST-LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDR-YGRRKVLIIGLLLFLLGTLLLALAP 90 (338)
T ss_pred HHHHhcchHHHHHHHHHHH-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhcccc-ccchHHHHHHHHHHHHHHHHHHhCc
Confidence 3333333444445554443 44444 578899999999999999999999999 6999888888776555555554441
Q ss_pred cccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCC-CCchhhhhhhhhHHHHHH-HHhH
Q 035554 124 QSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDE-EDPKEKKSKTSFYSYFYI-ALNL 201 (562)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~-~~~l 201 (562)
. ...+.+++.|...|++.+...+...+++.|.+|+ ++ |+...+.... ...+
T Consensus 91 ~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 143 (338)
T COG0477 91 N---------------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGAL 143 (338)
T ss_pred c---------------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHH
Confidence 1 2377788899989999999999999999999886 33 7788888777 5778
Q ss_pred HHHHHhhhhhhcccc--cchhHHHHHHHHHH
Q 035554 202 GCLFSETVLVYAENM--GYWVLGFWICAGCD 230 (562)
Q Consensus 202 g~~~~~~~~~~l~~~--~~~~~~f~i~~~~~ 230 (562)
|..++|.+++.+... .+|+..|.+.....
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 144 GLALGPLLAGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 888888776666543 57888666555444
No 230
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=98.27 E-value=0.00021 Score=74.77 Aligned_cols=109 Identities=17% Similarity=0.240 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHH
Q 035554 401 RVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALS 480 (562)
Q Consensus 401 ~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~ 480 (562)
.+..|+.+..+=++.+... .|+|..++.-++-|+..+.+..+.-+++...+|++++.+++|+.
T Consensus 438 v~~lgLa~~~~Rf~~~S~L-----------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~ 500 (618)
T KOG3762|consen 438 VMYLGLACNVGRFLYYSYL-----------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLL 500 (618)
T ss_pred eeeehhhHHHHHHHHHHHh-----------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHH
Confidence 4556666666666665554 46677777889999999999999999999999999999999997
Q ss_pred HHHH-HHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 035554 481 MSST-AIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCA 542 (562)
Q Consensus 481 ~~~~-~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~ 542 (562)
.... ++|-.+|+.+.|.+.+. .+....|...++.+++..+.+..+-
T Consensus 501 ~g~f~GlG~g~GslIGG~~v~~----------------fg~~ttf~~~giAcl~~l~~~~~iq 547 (618)
T KOG3762|consen 501 QGIFHGLGKGLGSLIGGFVVER----------------FGARTTFRIFGIACLVTLALFISIQ 547 (618)
T ss_pred HHHhcccCcchhhhhhhhhhee----------------ehhHHHHHHHHHHHHHHHHHHHHhh
Confidence 5444 77777777776655442 1224566776766666655555443
No 231
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=2.3e-06 Score=85.97 Aligned_cols=172 Identities=16% Similarity=0.058 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhccc--chHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLG--RYLTCVTFQAFSI 113 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G--rk~~i~~~~~~~~ 113 (562)
.++...+..-..+.+.-..-+.+++++.+.+..+..+.|....-..+.+.+++.+.|.++|| ++ |...-..+++...
T Consensus 271 ~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k-~~~~~wl~~~~gl~~~G 349 (464)
T KOG3764|consen 271 YILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADK-YPHLRWLLSLGGLATVG 349 (464)
T ss_pred hHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHh-cCchhHHHHHHHHHHHH
Confidence 44555555555566666777889999999999777899999999999999999999999999 69 5444444444444
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
.......++ .+...+++-+...+++.+....+..+....+.+.++.++-...+..++
T Consensus 350 ~~~~~iP~~-----------------------~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVya 406 (464)
T KOG3764|consen 350 VSSGPIPFA-----------------------TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYA 406 (464)
T ss_pred HHhchhHhh-----------------------hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHH
Confidence 333333333 135557777777788888887888888888777655331112678899
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHH
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDI 231 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~ 231 (562)
+...+..+|..+||.++|.+.+..|++|...+.++.-+
T Consensus 407 Iad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~ 444 (464)
T KOG3764|consen 407 IADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNL 444 (464)
T ss_pred HHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHH
Confidence 99999999999999999999999999887665555433
No 232
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.22 E-value=3.7e-05 Score=83.22 Aligned_cols=175 Identities=10% Similarity=-0.070 Sum_probs=115.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHH--hhCCCh------hhhhhHHHHHHHHHHHHHHHH----HHHhhhcccchHHHHHHHHH
Q 035554 44 QGLANLAFAGVEVNMVLFAKS--VLRQTN------AEASNTFSRWMGSLYLSSLMG----AFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 44 ~~~~~~~~~~~~~~~~~y~~~--~lg~s~------~~~~~~~~~~~~~~~~~~~~~----G~laDr~~Grk~~i~~~~~~ 111 (562)
.++....+|.+..-++.++.. ..+.+. ...+++.+...+...+..++. +++.|| ++..+.+.+|.++
T Consensus 281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r-~~~~~~~~~G~~l 359 (500)
T PRK09584 281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR-LPMPHKFAIGMVL 359 (500)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC-CCcHHHHHHHHHH
Confidence 335556666666666666543 111111 125566666666666776676 555666 4666888899999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
.+++.+.+........ +....+.+++.+..+++++|.+...|...+++.+..|++. |++.
T Consensus 360 ~~l~f~~l~~~~~~~~--------------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg~~ 419 (500)
T PRK09584 360 CSGAFLVLPLGAKFAN--------------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MGFI 419 (500)
T ss_pred HHHHHHHHHHHHHhcC--------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HHHH
Confidence 9999888777632111 1112346688889999999999999999999999999888 9999
Q ss_pred HHHHHHHHhHHHHHHhhhhhhcc----------cccchhHHHHHHHHHHHHHHHHHHh
Q 035554 192 YSYFYIALNLGCLFSETVLVYAE----------NMGYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~----------~~~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
++.+.....+|..++..+..... ...++...|...++..++..++++.
T Consensus 420 ~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 420 MGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888877766654321 1123666776655544433333333
No 233
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=98.22 E-value=0.00073 Score=69.76 Aligned_cols=157 Identities=18% Similarity=0.099 Sum_probs=111.9
Q ss_pred hHHHHHHHHHHh-hCCChhhhh-hHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 035554 54 VEVNMVLFAKSV-LRQTNAEAS-NTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPH 131 (562)
Q Consensus 54 ~~~~~~~y~~~~-lg~s~~~~~-~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (562)
.-+++..|+.+. .|++..|.. -+.-+..=.....-++...+.|. +|-|++++++.+...+...++.+..
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i~t~~lll~~~-------- 92 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYIITWLLLLFGT-------- 92 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHC--------
Confidence 346778899887 899998865 44444555666777889999998 7999999999888888888877763
Q ss_pred CCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhh
Q 035554 132 GCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLV 211 (562)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~ 211 (562)
+...+-+.-+..|++.+. ..+..+++-...|+++ -.++.++...+.-+|..++..++-
T Consensus 93 ---------------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~lgQ 150 (412)
T PF01770_consen 93 ---------------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLLGQ 150 (412)
T ss_pred ---------------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 255566777777777665 5666677766666554 456677777777777777776665
Q ss_pred hccc--ccchhHHHHHHHHHHHHHHHHHHhcC
Q 035554 212 YAEN--MGYWVLGFWICAGCDILAFSSLLSGT 241 (562)
Q Consensus 212 ~l~~--~~~~~~~f~i~~~~~~~~~~~~~~~~ 241 (562)
.+.. ..++...+++......++++..++.+
T Consensus 151 llvs~~~~sy~~L~~isl~~~~~a~~~~~fLP 182 (412)
T PF01770_consen 151 LLVSFGGVSYFQLNYISLASVSLALLIALFLP 182 (412)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5543 34677788888877777766655443
No 234
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.21 E-value=3.2e-05 Score=83.37 Aligned_cols=150 Identities=11% Similarity=0.025 Sum_probs=105.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhCCCh----hhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHH-------HHHHHHHH
Q 035554 44 QGLANLAFAGVEVNMVLFAKSVLRQTN----AEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLT-------CVTFQAFS 112 (562)
Q Consensus 44 ~~~~~~~~~~~~~~~~~y~~~~lg~s~----~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~-------i~~~~~~~ 112 (562)
..+....+......++.|.++..+.+. ....++.+...+...+..++.|++.|| +|+|+. +.+|.++.
T Consensus 278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~r-l~~r~~~~~~~~k~~~G~~l~ 356 (489)
T PRK10207 278 AVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTH-LGSKGKDLSMPMKFTLGMFLC 356 (489)
T ss_pred HHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHH-HhhCCCCCCcHHHHHHHHHHH
Confidence 444556666666788888875333221 123445555566777888889999999 798873 77787777
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhH
Q 035554 113 IIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192 (562)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 192 (562)
+++.+.++....... +.....+.+++....++.|+|.+...|...+++.+..|++. ++.+.
T Consensus 357 ~~~~~~~~~~~~~~~-------------~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~------~g~~~ 417 (489)
T PRK10207 357 SLGFLTAAAAGMWFA-------------DAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL------MGFIL 417 (489)
T ss_pred HHHHHHHHHHHHhhc-------------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH------HHHHH
Confidence 777654432100000 00012346777788889999999999999999999999887 88999
Q ss_pred HHHHHHHhHHHHHHhhhhhhc
Q 035554 193 SYFYIALNLGCLFSETVLVYA 213 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l 213 (562)
++++...++|..++..++.+.
T Consensus 418 g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 418 GMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999988777554
No 235
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.20 E-value=4.7e-06 Score=89.36 Aligned_cols=147 Identities=9% Similarity=-0.121 Sum_probs=112.1
Q ss_pred HHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCC
Q 035554 63 KSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDP 142 (562)
Q Consensus 63 ~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (562)
++.+|+++.+.|.+.....++..++..+.+++.+| ++.|+++.++.++.+++.+...+..+-..+. ..
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~-~g---------- 347 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWNLA-FG---------- 347 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeeccccc-cC----------
Confidence 45799999999999999999999999999999999 7999999999998888776543221001000 00
Q ss_pred CCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccc----
Q 035554 143 HSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGY---- 218 (562)
Q Consensus 143 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~---- 218 (562)
-...+.....-++.+++.+....+...++.+..|++. +++.++++....|+|..+++.+++++.+..|
T Consensus 348 --i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~ 419 (468)
T TIGR00788 348 --ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIGITCD 419 (468)
T ss_pred --CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 0112234445567788888888888999999999988 8999999999999999999999999988766
Q ss_pred -hhHHHHHHHHH
Q 035554 219 -WVLGFWICAGC 229 (562)
Q Consensus 219 -~~~~f~i~~~~ 229 (562)
++..+.+..++
T Consensus 420 ~~~~~~~~i~i~ 431 (468)
T TIGR00788 420 NSNNLWLLILGH 431 (468)
T ss_pred cccchHHHHHHH
Confidence 55554443333
No 236
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.18 E-value=3.7e-05 Score=81.80 Aligned_cols=208 Identities=11% Similarity=-0.084 Sum_probs=141.2
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-hhCCChh-----h-----hhhHHHHHHHHHHHHHHHHHHHhh
Q 035554 28 KDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKS-VLRQTNA-----E-----ASNTFSRWMGSLYLSSLMGAFLSD 96 (562)
Q Consensus 28 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~-~lg~s~~-----~-----~~~~~~~~~~~~~~~~~~~G~laD 96 (562)
+..++.||.++.+...+++.+++++.+..+.+.|+.+ .++-++. + ..+....+.+...+..++--++.+
T Consensus 251 ~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~ 330 (477)
T TIGR01301 251 GAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCR 330 (477)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999999999999999875 4553321 1 223344455555677777888999
Q ss_pred hcccc-hHHHHHHHHHHHHHHHHHHhhhcccc-cCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhh
Q 035554 97 SYLGR-YLTCVTFQAFSIIGLLGLSFATQSFL-LRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGA 174 (562)
Q Consensus 97 r~~Gr-k~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~ 174 (562)
+ +|+ |++..++.++.+++.....+.+++++ .. +.++-++.. .+.....+..++...+.|+..+.....=.++++
T Consensus 331 ~-~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~--~~~~~~~~~-~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s 406 (477)
T TIGR01301 331 G-WGAGKRLWGIVNIILAICLAATVLVTYVAKNSR--YYDGDGESL-PPPTGIKASALIVFAILGIPLAITYSIPFALAS 406 (477)
T ss_pred H-hccchhHHHHHHHHHHHHHHHHHHHHhhhhccc--ccccccccc-CcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHH
Confidence 9 795 67778888888888887776533211 00 000000000 010111356667777889999888888889999
Q ss_pred ccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccc--hhHHHHHHHHHHHHHHHHHHhcCcc
Q 035554 175 DQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGY--WVLGFWICAGCDILAFSSLLSGTLR 243 (562)
Q Consensus 175 ~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~--~~~~f~i~~~~~~~~~~~~~~~~~~ 243 (562)
+..++++ ++.|..++++|.++.+.-.+..+..|.+.+..| -...+.+.++..+++.++.+...|+
T Consensus 407 ~~~~~~~----~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 407 IRSSNLG----AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred HHccccC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 9887543 116899999999999999888877776554433 4567788888887777766655554
No 237
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.09 E-value=2.7e-05 Score=60.84 Aligned_cols=69 Identities=14% Similarity=0.048 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 035554 42 VNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFS 112 (562)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~ 112 (562)
...++...+.-.+.++++.|+++ .|++..++|.+.++..+...+++++.|+++|| .|++|.++....+.
T Consensus 7 ~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk-~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 7 AFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADK-FGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCccHHHHHHHHHH
Confidence 34455556666788999999985 99999999999999999999999999999999 69998888765543
No 238
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.95 E-value=4.3e-05 Score=81.54 Aligned_cols=164 Identities=15% Similarity=0.077 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc---ccchHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSY---LGRYLTCVTFQAF 111 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grk~~i~~~~~~ 111 (562)
..+|...++.++.....|+...++|.|+++-.|+|..+++.+...+.+++.++.+++|+++||. ..+|..+.....+
T Consensus 273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~ 352 (495)
T KOG2533|consen 273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCL 352 (495)
T ss_pred hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4788999999999999999999999999996779999999999999999999999999999992 2455555555544
Q ss_pred HHH-HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 112 SII-GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 112 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
+.+ +...+..... ......+......+.+...++...-..+-...+. | |..
T Consensus 353 ~~~~g~~~l~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~----k-~~~ 404 (495)
T KOG2533|consen 353 YAIIGAISLLAAAV-----------------------LPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT----K-ALT 404 (495)
T ss_pred HHHHHHHHHHhhcc-----------------------chHHhHHHHhcchhhHHHHHHHHhhccccccchH----H-hHH
Confidence 433 4344333211 1112222222223333333444444444332222 2 455
Q ss_pred hHHHHHHHHhHHHHHH-hhhhhhcccccchhHHHHHH
Q 035554 191 FYSYFYIALNLGCLFS-ETVLVYAENMGYWVLGFWIC 226 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~-~~~~~~l~~~~~~~~~f~i~ 226 (562)
..+.+..+.+.++.++ ++.-+.....++|...|...
T Consensus 405 ~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~ 441 (495)
T KOG2533|consen 405 TVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYML 441 (495)
T ss_pred HHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHH
Confidence 5555555555544444 44445555567888888433
No 239
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=97.90 E-value=0.045 Score=58.27 Aligned_cols=162 Identities=16% Similarity=0.079 Sum_probs=103.3
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCC-----hhhhhhHHHHHHHHHHHH-HHHHHHHhhhcccchHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQT-----NAEASNTFSRWMGSLYLS-SLMGAFLSDSYLGRYLTCVT 107 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s-----~~~~~~~~~~~~~~~~~~-~~~~G~laDr~~Grk~~i~~ 107 (562)
+|.++...+..+|..+.|+.+.+ +++.+..+ .....++.+...+...+. .++-+++++| ++|+|.+.+
T Consensus 6 ~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~-~~~~~lf~~ 79 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNI-LSKEALFYT 79 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHhHHH
Confidence 46788888888999999888877 67777663 245666666655554444 7889999999 799999988
Q ss_pred HHHHHHHHHHHHHhhhcccccC---CC-CCCCCCCcCCC-CC----------CchHHHHHHHHHHHHHhcccchh-hhhh
Q 035554 108 FQAFSIIGLLGLSFATQSFLLR---PH-GCGKIGQLCDP-HS----------PAETAIFYISIYLFALGIGAPEP-ALAT 171 (562)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~-~~----------~~~~~~~~~~~~l~g~g~g~~~~-~~~~ 171 (562)
....++.-.++..+.- .|.-. |+ .+|+ .... +. ......+++..-+.+. .... ...+
T Consensus 80 ~~~~F~~~f~lF~~vl-~p~~~~~~p~~~~~~---~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~---~vvS~lFW~ 152 (472)
T TIGR00769 80 VISPFLGFFALFAFVI-YPLSDLLHPTALADK---LLSLLPPGFMGFIAILRIWSFALFYVMAELWGS---VVLSLLFWG 152 (472)
T ss_pred HHHHHHHHHHHHHHHH-hcchhhcCCcHHHHH---HHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHH---HHHHHHHHH
Confidence 7776666555544431 12200 00 0000 0000 00 0011133333333222 2232 6788
Q ss_pred hhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcc
Q 035554 172 FGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAE 214 (562)
Q Consensus 172 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~ 214 (562)
+..|.+..++ -.|.+++++.+.|+|..+++.+..++.
T Consensus 153 fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 153 FANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998777 669999999999999999998888875
No 240
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=97.89 E-value=0.038 Score=57.25 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=52.3
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035554 437 LSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILS 496 (562)
Q Consensus 437 ~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~ 496 (562)
.++|.+.+..+..|+-.+..+......+.+..|++.|..++|...+.-.+|..+++.+.-
T Consensus 333 psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l 392 (402)
T PF02487_consen 333 PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGL 392 (402)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 466777778888899999999999999999999999999999999999999988876543
No 241
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=97.86 E-value=1.5e-07 Score=100.47 Aligned_cols=182 Identities=15% Similarity=-0.010 Sum_probs=107.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+.....+....+..+..+....+...++.+..+.+.. -.......+...++.+++.++.|| +|||+.++.+..+.++
T Consensus 252 ~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~GRr~~~i~~~~~~~~ 328 (451)
T PF00083_consen 252 KRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDR-FGRRKLLIIGLLLMAI 328 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccc-cccccccccccccccc
Confidence 3444444445455444444444444555556676666 222223345566777788899999 7999999999888777
Q ss_pred HHHHHH-hhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 115 GLLGLS-FATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 115 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
+.+.+. .....+. .+.......+...............+....+..|.+|++. |.++.+
T Consensus 329 ~~~~~~~~~~~~~~--------------~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~~ 388 (451)
T PF00083_consen 329 CSLILGIIFFLGVS--------------SSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTGIG 388 (451)
T ss_pred cccccccccccccc--------------cccccccccceeeeeccccccccccccccccccccccccc------cccccc
Confidence 776664 1100010 0000011111111111111222334566688899999999 999999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
+.+....+++.+++.+...+.+..+-...|.+.+.+.++..+..+.
T Consensus 389 ~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~ 434 (451)
T PF00083_consen 389 LSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYF 434 (451)
T ss_pred cccccccccccccccccccccccccccccchhhHHHHHHHHhheeE
Confidence 9999999999999988888877665344555555544444444333
No 242
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=97.75 E-value=6.2e-05 Score=77.22 Aligned_cols=163 Identities=15% Similarity=0.082 Sum_probs=124.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc---ccchHHHHH-HHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSY---LGRYLTCVT-FQA 110 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grk~~i~~-~~~ 110 (562)
+.++.+....+...+++-.=..++++|++ .+|++..-.+.+-.+.-+.+.+.+|+.|..+||. +||||-++. +.+
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 67777777777777888877888889887 5899999999999999999999999999999986 788887764 455
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCC----chHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSP----AETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKK 186 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 186 (562)
..+++.++..+++.+-. -.|++... ....+++++.-+.=+.+-..+.++-++.+|+...+++
T Consensus 111 ~i~~~l~Lig~aaDig~----------~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~---- 176 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGL----------LLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK---- 176 (498)
T ss_pred HHHHHHhhhhhHhhhhH----------HhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh----
Confidence 67778888777743221 12222222 3556777788788888878889999999999866552
Q ss_pred hhhhhHHHHHHHHhHHHHHHhhhhhhc
Q 035554 187 SKTSFYSYFYIALNLGCLFSETVLVYA 213 (562)
Q Consensus 187 ~r~~~~~~~~~~~~lg~~~~~~~~~~l 213 (562)
+.++.+++...+.+|+.+|-..+++.
T Consensus 177 -~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 177 -KTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred -hhccchhHHHHHHhcceeeeeccccc
Confidence 12288889999999998887776654
No 243
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.73 E-value=0.00016 Score=80.32 Aligned_cols=165 Identities=15% Similarity=0.203 Sum_probs=104.3
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH--hhhhc--------
Q 035554 359 PASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRR--LKYAS-------- 428 (562)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~--~~~~~-------- 428 (562)
.+.+.+.+.+...+..+++. .+.+|.+| .+.+.+|.++++++.+++++.+-.. +++..
T Consensus 70 ~G~i~s~~~i~~~~~~i~v~----~~~~r~~r--------~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~ 137 (633)
T TIGR00805 70 SGLINGSYEIGNLLLIIFVS----YFGTKLHR--------PIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNL 137 (633)
T ss_pred ceeeeehhhHHHHHHHHHHH----HhhcccCc--------ceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccc
Confidence 34555555555555555555 23335433 2256788888888888877654211 11100
Q ss_pred -----c-----------------CCCCCc--cchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHH
Q 035554 429 -----F-----------------GGEETS--SLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSST 484 (562)
Q Consensus 429 -----~-----------------~~~~~~--~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~ 484 (562)
. +|+... ......+++.-++.|+|++...+...+++.|.+|++.|+++.|++....
T Consensus 138 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~ 217 (633)
T TIGR00805 138 SSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIA 217 (633)
T ss_pred cccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHH
Confidence 0 000000 1134456678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhhhhcCC------------CCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 035554 485 AIGTYVCSMILSVVMVLTTKNG------------KPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVC 541 (562)
Q Consensus 485 ~lg~~lg~~l~~~i~~~~~~~~------------~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~ 541 (562)
.+|..+|+.+.+.+.....++. ++.| .+.|...|.+.+++.++..+.++++
T Consensus 218 ~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprW------iGaWwl~Fli~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 218 VFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRW------IGAWWIGFLICGGVALLTSIPFFFF 280 (633)
T ss_pred HhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccH------HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999998887665332110 0111 1234555777777666655544443
No 244
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.70 E-value=0.00019 Score=75.12 Aligned_cols=169 Identities=9% Similarity=-0.070 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHH
Q 035554 41 LVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLS 120 (562)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~ 120 (562)
++..+...++.-.+.+++--+++ +++-.+...|........+-++.-++.+++..| +|+-+++..+++...+=++..+
T Consensus 377 f~~av~mG~g~~lv~tFLfWHle-d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~k-iGHv~v~~lgLa~~~~Rf~~~S 454 (618)
T KOG3762|consen 377 FFVAVVMGAGVGLVFTFLFWHLE-DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEK-IGHVNVMYLGLACNVGRFLYYS 454 (618)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh-hcCCcceeeeehhhhhccchHHHHHHHHHHHHH-hcccceeeehhhHHHHHHHHHH
Confidence 33334444444445555544444 456566666766666677777888899999999 7999999999999888887777
Q ss_pred hhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH-HHHHH
Q 035554 121 FATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY-FYIAL 199 (562)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~ 199 (562)
... +.|+.+..-+++|+..+..+.++.+++.+..|++- |.++-++ ....-
T Consensus 455 ~L~-----------------------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~ 505 (618)
T KOG3762|consen 455 YLQ-----------------------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFH 505 (618)
T ss_pred Hhc-----------------------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhc
Confidence 762 37778888899999999999999999999999888 7788877 44445
Q ss_pred hHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 200 NLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 200 ~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
.+|-.+|.+++|.+.+.+|-+..|.+.++..++.++.+...
T Consensus 506 GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 506 GLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred ccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence 78889999999999998888888888777666665554443
No 245
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=97.60 E-value=6.6e-05 Score=77.03 Aligned_cols=179 Identities=12% Similarity=0.050 Sum_probs=119.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhh--------HHHHHHHHHH-HHHHHHHHHhhhcccchHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASN--------TFSRWMGSLY-LSSLMGAFLSDSYLGRYLTC 105 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~--------~~~~~~~~~~-~~~~~~G~laDr~~Grk~~i 105 (562)
+.++......|+.-.++|+...+...-++ ..|+.+.+... ...+....+. -+..++.++.|+ +|||+..
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~-iGRk~iq 381 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDI-IGRKYIQ 381 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeeh-hhhHHHH
Confidence 45556666777777888888766655444 45554433222 2222222222 255677889999 8999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHH-HHHHHHHHHHHhcccchhhhhhhhhccCCCCCchh
Q 035554 106 VTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETA-IFYISIYLFALGIGAPEPALATFGADQFDEEDPKE 184 (562)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 184 (562)
+.|.+++.+..+.++.. ++ | ..+...+. ...+..++..+| ...+...+.+|.||++.
T Consensus 382 ~~GF~~~~i~~~~~~~~---y~----------~---~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~FParv--- 439 (538)
T KOG0252|consen 382 LMGFFIMTIFFFVIAGP---YN----------Q---LENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIFPARV--- 439 (538)
T ss_pred HhhHHHHHHHHHHHcCC---cc----------c---ccccCceeehHHHHHHHHhcC---CCceeEEeehhhchHHH---
Confidence 99999998888777664 11 0 11112222 222333333444 34455667789999988
Q ss_pred hhhhhhhHHHHHHHHhHHHHHHhhhhhhccc-----ccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 185 KKSKTSFYSYFYIALNLGCLFSETVLVYAEN-----MGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 185 ~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~-----~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
|+...++-....-+|+.++.....++.+ ..+.+..|++.+.++.++.+.-++.
T Consensus 440 ---R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~ 497 (538)
T KOG0252|consen 440 ---RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI 497 (538)
T ss_pred ---hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe
Confidence 9999999888889999999988888888 6788999999999888777654443
No 246
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=97.60 E-value=0.12 Score=54.36 Aligned_cols=190 Identities=13% Similarity=-0.081 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|..+.+-...++.+..--+...-.+.|+.+-+.-+.--.+..-.+-.+...++.+..|...|| ..|.|++..+.+..-+
T Consensus 2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~-~~Rl~~~~~~l~~Qn~ 80 (432)
T PF06963_consen 2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDR-SPRLKVIRTSLVVQNL 80 (432)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhC-CcchhhHHHHHHHHHH
Confidence 456677778888877777777788888887655455445554455567777888899999999 6999998887665333
Q ss_pred HHHH----HHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 115 GLLG----LSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 115 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
+..+ +...-..+.. ...++.....++.+..++-++..-+......+.=.|+...=..+.+..+.+
T Consensus 81 sv~~s~~~~~~l~~~~~~-----------~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~ 149 (432)
T PF06963_consen 81 SVAASCALFLLLLSYPSS-----------SSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALAR 149 (432)
T ss_pred HHHHHHHHHHHHHhCCcc-----------ccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHH
Confidence 2222 1111110110 000001111122222222223322222333333455533211001111223
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHH
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSS 236 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~ 236 (562)
.-+...-.=-+--.++|++.|.+....+......+.++.-++++.+
T Consensus 150 ~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v 195 (432)
T PF06963_consen 150 MNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV 195 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 3333222334467789999999988788877766666666666554
No 247
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.55 E-value=0.0011 Score=66.72 Aligned_cols=152 Identities=13% Similarity=0.029 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHH-HHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc-hHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFA-KSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGR-YLTCVTFQAFSI 113 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~-~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-k~~i~~~~~~~~ 113 (562)
..+..+....+.+.-.|...-+...++ .+.+|+++.|+|-+++...+.+.+.+..-....||..|. +-.+..++.+..
T Consensus 261 ~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~v 340 (451)
T KOG2615|consen 261 SVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIV 340 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHH
Confidence 445555555555555555555555555 356999999999988887777777777777777774333 334445555555
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
-..++...+ + ....++++..+-.+..+...++...++....|.++ |+...+
T Consensus 341 P~~llls~~---~--------------------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------rG~~~G 391 (451)
T KOG2615|consen 341 PAFLLLSLA---R--------------------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------RGTLNG 391 (451)
T ss_pred HHHHHHhcc---c--------------------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------chHHHH
Confidence 555555554 1 24568888999999999999999999999999888 999999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccc
Q 035554 194 YFYIALNLGCLFSETVLVYAENM 216 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~ 216 (562)
+......++-++||.++|.+..+
T Consensus 392 i~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 392 IFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred HHHHHHHHHHHhhhhhhheeEEE
Confidence 99999999999999999888653
No 248
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=97.52 E-value=0.0022 Score=69.79 Aligned_cols=151 Identities=13% Similarity=-0.051 Sum_probs=86.0
Q ss_pred CchHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 33 GWRCGTLLLVNQGL-ANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 33 ~~~~~~~l~~~~~~-~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
.+|..........+ ...++..+..+.+..+ +..|.+... .+...+..+...++..++.++.|| +|||+.++.+...
T Consensus 292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if-~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~-~gRr~lll~s~~~ 368 (513)
T KOG0254|consen 292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTIF-KSAGLKSDT-FLASIILGVVNFLGTLVATYLVDR-FGRRKLLLFGAAG 368 (513)
T ss_pred hHHHHHHHHHHHHHHHHhCCceEEeehHHHH-HhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHhHHH
Confidence 44545444444444 4444455555555554 455665443 444445566777777888999999 7999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHH--HHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFY--ISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKT 189 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 189 (562)
+.++.+++........ ++. . ......++.+ +......+. ....|....+..|.+|.+- |+
T Consensus 369 m~~~~~~~~~~~~~~~---------~~~-~-~~~~~~~~~~~~~~~~v~~f~-~g~g~v~w~~~sEifp~~~------r~ 430 (513)
T KOG0254|consen 369 MSICLVILAVVGVFAL---------YYP-N-SSKGAGWLAIVFLCLFIFSFA-IGWGPVPWVIVSEIFPLRL------RS 430 (513)
T ss_pred HHHHHHHHHHHHHHhc---------cCC-C-cccchhHHHHHHHHHHHHHHh-cccccchhhhhhccCcHhH------Hh
Confidence 9999888776522111 000 0 0011112222 222222333 2334455568899999887 77
Q ss_pred hhHHHHHHHHhHHHH
Q 035554 190 SFYSYFYIALNLGCL 204 (562)
Q Consensus 190 ~~~~~~~~~~~lg~~ 204 (562)
.+.++....+.+...
T Consensus 431 ~~~s~~~~~n~~~~~ 445 (513)
T KOG0254|consen 431 KGASLAVAVNWLWNF 445 (513)
T ss_pred hhHHHHHHHHHHHHH
Confidence 777774444444333
No 249
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.46 E-value=0.0043 Score=65.26 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHH
Q 035554 400 QRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIAL 479 (562)
Q Consensus 400 ~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl 479 (562)
+.+..+.+..++..++.++. .+.+.+.+.-+++|++|+... +...++++.+|++.|++++|+
T Consensus 93 ~vL~l~~l~Wsl~t~L~~fa-----------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi 154 (511)
T TIGR00806 93 PVLVLQALSFVCVWLLLLLG-----------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAY 154 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHH
Confidence 36677777777777777775 356778889999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 035554 480 SMSSTAIGTYVCSMILSV 497 (562)
Q Consensus 480 ~~~~~~lg~~lg~~l~~~ 497 (562)
++....+|.++++++.+.
T Consensus 155 ~~sg~~vG~~Ia~~L~ql 172 (511)
T TIGR00806 155 SRAAVLLGVFLSSVLGQL 172 (511)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999887
No 250
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.42 E-value=0.0063 Score=65.27 Aligned_cols=155 Identities=6% Similarity=-0.082 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-----CCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccch-H------H
Q 035554 37 GTLLLVNQGLANLAFAGVEVNMVLFAKSVL-----RQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRY-L------T 104 (562)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~~~~y~~~~l-----g~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk-~------~ 104 (562)
...+++...+-+..|.=..+.+..|.++.. |+. ...++..+...+...+..|+.+++=.| .+|| | =
T Consensus 270 ~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~-l~~~~~~~s~~~K 347 (493)
T PRK15462 270 IVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKE-SVAGNRTVRIWGK 347 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHH-HhcCCCCCCcHHH
Confidence 334444444445555556677777776643 332 236677777778778888888888777 5432 2 1
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchh
Q 035554 105 CVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKE 184 (562)
Q Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 184 (562)
+.+|+++..++++.+.++..... ++...+.+++++..+++++|.-+..|...++++++.|++-
T Consensus 348 fa~g~~~~g~~f~~l~~~~~~~~--------------~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~--- 410 (493)
T PRK15462 348 FALGLGLMSAGFCILTLSARWSA--------------MYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGV--- 410 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC--------------CCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHH---
Confidence 66788888888877776532111 1112467788888999999999999999999999999888
Q ss_pred hhhhhhhHHHHHHHH-hHHHHHHhhhhhhc
Q 035554 185 KKSKTSFYSYFYIAL-NLGCLFSETVLVYA 213 (562)
Q Consensus 185 ~~~r~~~~~~~~~~~-~lg~~~~~~~~~~l 213 (562)
++..++.+.... .+|..++..+.++.
T Consensus 411 ---~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 411 ---TGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999987644 67777776666655
No 251
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.28 E-value=0.004 Score=67.75 Aligned_cols=154 Identities=11% Similarity=-0.064 Sum_probs=108.8
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChh---hhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHH
Q 035554 29 DRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNA---EASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTC 105 (562)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~---~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i 105 (562)
++.+++|.+...++..++....+|++..+.|....+.++-|.. +.++....+.++..++.++.|.+.-+ ++|-|..
T Consensus 304 ~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~-ir~~Kw~ 382 (599)
T PF06609_consen 304 RLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSK-IRHIKWQ 382 (599)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHH-ccchhHH
Confidence 3445567888888888999989999988899888887776653 56777788888899999999999988 6876655
Q ss_pred -HHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchh
Q 035554 106 -VTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKE 184 (562)
Q Consensus 106 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 184 (562)
+++.+++.++..+++... |. + ....+...++.|+|.|...........-..|+++
T Consensus 383 li~~~~~~ta~~Gama~~~--~~-----------------n--~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~--- 438 (599)
T PF06609_consen 383 LIFGSVLMTAFCGAMAAVR--PD-----------------N--KNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED--- 438 (599)
T ss_pred HHHHHHHHHHHHHHHHHcc--CC-----------------C--cchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH---
Confidence 466666665555544331 11 1 2223445567778877766555555544456666
Q ss_pred hhhhhhhHHHHHHHHhHHHHHHhhhh
Q 035554 185 KKSKTSFYSYFYIALNLGCLFSETVL 210 (562)
Q Consensus 185 ~~~r~~~~~~~~~~~~lg~~~~~~~~ 210 (562)
.+.+.++......+|+.++..+-
T Consensus 439 ---ig~a~gL~~s~R~~GGsIg~aIy 461 (599)
T PF06609_consen 439 ---IGTATGLTGSIRSIGGSIGYAIY 461 (599)
T ss_pred ---HHHHHHHHHHHHHHhhHHHHHHH
Confidence 88888888888888888776543
No 252
>PTZ00207 hypothetical protein; Provisional
Probab=97.28 E-value=0.0025 Score=69.67 Aligned_cols=174 Identities=14% Similarity=0.038 Sum_probs=122.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-CC-Chhhhhh-HHHHHHHHHHHHHHHHHHHhhhcccchH--------
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVL-RQ-TNAEASN-TFSRWMGSLYLSSLMGAFLSDSYLGRYL-------- 103 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~l-g~-s~~~~~~-~~~~~~~~~~~~~~~~G~laDr~~Grk~-------- 103 (562)
..+|+++...+|...+-..+..++-. +-+.+ |. ++.+... .++.+.+++.+|.+.+|+++.. .-||+
T Consensus 353 ~d~Wll~~~~~cg~g~gl~~~~N~~q-I~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~-~~~~~~~~r~prt 430 (591)
T PTZ00207 353 ARLWCLLWSIFCCVGAHFVIIFNARF-IYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIW-SQKRRAEDRVPIT 430 (591)
T ss_pred hhHHHHHHHHHHhhCchheeeecHHH-HHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHH-HHhhccccccchh
Confidence 47899999988887776666666543 45567 76 3332233 7889999999999999999833 23333
Q ss_pred -HHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCc
Q 035554 104 -TCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDP 182 (562)
Q Consensus 104 -~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 182 (562)
.+.+..+ +.++.+++++. .| ...++++-++.|+++|..++...+...|+|. ++
T Consensus 431 ~~l~~~~~-~~~~~lll~~~--~p---------------------~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~- 484 (591)
T PTZ00207 431 IALFIPSV-CIITMLTLFLT--LP---------------------KAALPLPYFIAAFANGFMAATIALVTRTIFA-KD- 484 (591)
T ss_pred HHHHHHHH-HHHHHHHHHHH--CC---------------------ccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cc-
Confidence 2333333 66677766664 22 1358999999999999999999999999999 77
Q ss_pred hhhhhhhhhHHHHHHHHhHHHHHH-hhhhhhcccc-------------cchhHHHHHHHHHHHHHHHHHHhcC
Q 035554 183 KEKKSKTSFYSYFYIALNLGCLFS-ETVLVYAENM-------------GYWVLGFWICAGCDILAFSSLLSGT 241 (562)
Q Consensus 183 ~~~~~r~~~~~~~~~~~~lg~~~~-~~~~~~l~~~-------------~~~~~~f~i~~~~~~~~~~~~~~~~ 241 (562)
-+.-+++....+-+|..+- -.+.|.+.+. --++..|.+.++...++.++-....
T Consensus 485 -----~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~ 552 (591)
T PTZ00207 485 -----PAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVH 552 (591)
T ss_pred -----hHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhee
Confidence 6788888888888887764 3455555431 1277888888777777766644443
No 253
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=97.27 E-value=0.0075 Score=54.00 Aligned_cols=104 Identities=15% Similarity=0.157 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHH
Q 035554 75 NTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYIS 154 (562)
Q Consensus 75 ~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (562)
.-.++......+.+++++.+.++ +|.|+.+++|.+.+.+-...... | +.+.++.+
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~~~y~~y~~~~~~----~--------------------~~~~l~~~ 95 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNK-LGPKWSMILGSLGYAIYIASFFY----P--------------------NSYTLYPA 95 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHh----h--------------------hHHHHHHH
Confidence 33445566677777888889999 89999999998887754433222 2 36678888
Q ss_pred HHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhh
Q 035554 155 IYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETV 209 (562)
Q Consensus 155 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~ 209 (562)
-.+.|++.+..+.+...++.+..++++ +++..+++....+.+..+|.++
T Consensus 96 s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~ 144 (156)
T PF05978_consen 96 SALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLF 144 (156)
T ss_pred HHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998766555 6777777777777766666544
No 254
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.09 Score=53.24 Aligned_cols=159 Identities=14% Similarity=0.089 Sum_probs=95.0
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhh-----hcccchHH
Q 035554 30 RTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSD-----SYLGRYLT 104 (562)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD-----r~~Grk~~ 104 (562)
.++..+++.++++..... ..-+|+...+|..++ .-|.|-++.+.....+. =+---++...+.| | +||||.
T Consensus 26 ~~~d~~~illLl~LYllQ-GiP~GL~~~iP~lL~-ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~-~Grrks 100 (510)
T KOG3574|consen 26 LKGDRSSILLLLFLYLLQ-GIPLGLIGAIPLLLQ-AKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKR-FGRRKS 100 (510)
T ss_pred hhhhhhhHHHHHHHHHHc-CCchhHhhhhHHHhc-CCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHh-hccccc
Confidence 345556777777666655 445666666666666 45777777664333221 1122345666777 8 899997
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchh
Q 035554 105 CVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKE 184 (562)
Q Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 184 (562)
-++=+ -+.+|.++..++...+. ..+ ++...+....+....++..+..+....++-...-.+..+++
T Consensus 101 Wvvp~-q~llG~~mllLs~~v~~----~~g------~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~--- 166 (510)
T KOG3574|consen 101 WVVPC-QYLLGLFMLLLSYLVDR----GLG------GNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSREN--- 166 (510)
T ss_pred eeeeh-HHHHHHHHHHHhhCCCc----ccc------cCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh---
Confidence 55332 12334444444421111 111 12223334444455566677777777788888888887777
Q ss_pred hhhhhhhHHHHHHHHhHHHHHHhhhh
Q 035554 185 KKSKTSFYSYFYIALNLGCLFSETVL 210 (562)
Q Consensus 185 ~~~r~~~~~~~~~~~~lg~~~~~~~~ 210 (562)
.+.+.+.+..+.+.|.+++..+.
T Consensus 167 ---lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 167 ---LGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred ---cCchhHHHHHHHhhhHHhhccee
Confidence 88898899999999999886544
No 255
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=97.15 E-value=0.0015 Score=69.39 Aligned_cols=149 Identities=21% Similarity=0.115 Sum_probs=114.1
Q ss_pred hHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHH-HHhhhcccchHHHHHHHHHH
Q 035554 35 RCGTL-LLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGA-FLSDSYLGRYLTCVTFQAFS 112 (562)
Q Consensus 35 ~~~~~-l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G-~laDr~~Grk~~i~~~~~~~ 112 (562)
|..+. .+...+..-.-.-+-...++.|++..++++..+.+...+...+...++.++.. .+.-. +|-|+++..|++..
T Consensus 240 r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~~~ 318 (463)
T KOG2816|consen 240 RLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLLSE 318 (463)
T ss_pred ccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHHHH
Confidence 44444 33333333333333332446788889999999999999999999999988877 77777 89999999999999
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhH
Q 035554 113 IIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192 (562)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 192 (562)
.+..+..+++. +.|.++....+. ...+...|...++.+.+.+.++ +++.+
T Consensus 319 ~~~~~~~af~~-----------------------~~w~~~~~~v~~-~~~~~~~pa~~s~~s~~v~~~e------~g~v~ 368 (463)
T KOG2816|consen 319 FLQLLLFAFAT-----------------------ETWMMFAAGVVV-ALAGIVFPAIRAFASILVSPEE------QGKVF 368 (463)
T ss_pred HHHHHHHHHhc-----------------------cchhhhHHHHHH-HhhcchhHHHHhHHHhhccccc------ccchh
Confidence 99999998872 255566666554 4556778999999999999888 99999
Q ss_pred HHHHHHHhHHHHHHhhhhhhcc
Q 035554 193 SYFYIALNLGCLFSETVLVYAE 214 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~ 214 (562)
++......+.+.++|.+-+.+.
T Consensus 369 ~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 369 GIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred hHHHHHHHHhhhhhHHHHHHHH
Confidence 9999999999999988776653
No 256
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=97.05 E-value=0.0059 Score=48.28 Aligned_cols=72 Identities=7% Similarity=-0.060 Sum_probs=61.8
Q ss_pred HHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhh
Q 035554 49 LAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFA 122 (562)
Q Consensus 49 ~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~ 122 (562)
++.+..++.+|. ++++.++|..+.|++-+...+++.++.+...++.++ ..+++.+..++++..+..+.+.+.
T Consensus 6 igRFayTplLP~-M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 6 IGRFAYTPLLPL-MQADGGLSLSQAGWLASANYLGYLVGALLASRLPRH-SRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred hHHHHHHhHhHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555565554 677899999999999999999999999999999998 688899999999999899888876
No 257
>PRK03612 spermidine synthase; Provisional
Probab=96.74 E-value=0.092 Score=56.95 Aligned_cols=172 Identities=16% Similarity=0.033 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHH-HHHHHH-HHHHH
Q 035554 40 LLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCV-TFQAFS-IIGLL 117 (562)
Q Consensus 40 l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~-~~~~~~-~~~~~ 117 (562)
+....++..++..+......-.+...+|-+..+.+.+++++..+..++..++|+++++ .-|+...+ ++..+. .++..
T Consensus 19 l~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~-~~~~~~~~e~~i~l~~~~~~~ 97 (521)
T PRK03612 19 LLAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD-AAAGFVAVELLLALLGGLSAL 97 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556655555666666777789899999999999999999999999988755 23332222 111111 11111
Q ss_pred HHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHH
Q 035554 118 GLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYI 197 (562)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 197 (562)
++.....+.. .....++...++.++..|+..|....+..+... ++ -++..+-.|.
T Consensus 98 ll~~~~~~~~------------------~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~ 152 (521)
T PRK03612 98 ILYAAFAFQG------------------LSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLA 152 (521)
T ss_pred HHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHh
Confidence 1111110000 011222333445667777777776666554221 12 2345566677
Q ss_pred HHhHHHHHHhhhhhhccc-ccch-hHHHHHHHHHHHHHHHHH
Q 035554 198 ALNLGCLFSETVLVYAEN-MGYW-VLGFWICAGCDILAFSSL 237 (562)
Q Consensus 198 ~~~lg~~~~~~~~~~l~~-~~~~-~~~f~i~~~~~~~~~~~~ 237 (562)
...+|+++|.++.+++.- ..|- ...+.++.+..+++++++
T Consensus 153 ~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~ 194 (521)
T PRK03612 153 ADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFL 194 (521)
T ss_pred HHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 777888888777776543 4453 344444444444444333
No 258
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=96.73 E-value=0.0051 Score=64.93 Aligned_cols=210 Identities=13% Similarity=0.056 Sum_probs=126.9
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHH-HHHHHH-HHHHHHHhhhc--ccchH
Q 035554 28 KDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWM-GSLYLS-SLMGAFLSDSY--LGRYL 103 (562)
Q Consensus 28 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~-~~~~~~-~~~~G~laDr~--~Grk~ 103 (562)
+..+..|+..+.+++..+...+.+..+.+..+.+....++++..++-...+... +.+.+. .+...+.--|. +.+|+
T Consensus 255 ~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~ 334 (488)
T KOG2325|consen 255 KKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRR 334 (488)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccce
Confidence 334455678888888888888888888888888888888888877554444331 122222 22222222230 23344
Q ss_pred HHHHHHHHHHHHHHHH--HhhhcccccC--C--C-CCCCC-CCcCCCCCCchHHHHHHHHH-HHHHhcccchhhhhhhhh
Q 035554 104 TCVTFQAFSIIGLLGL--SFATQSFLLR--P--H-GCGKI-GQLCDPHSPAETAIFYISIY-LFALGIGAPEPALATFGA 174 (562)
Q Consensus 104 ~i~~~~~~~~~~~~~~--~~~~~~~~~~--~--~-~~~~~-~~~~~~~~~~~~~~~~~~~~-l~g~g~g~~~~~~~~~~~ 174 (562)
.+..++++........ +..-....+. + + .|+.. |+-|+..+....+.++++.. ++|.+.-.......++-+
T Consensus 335 ~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlyS 414 (488)
T KOG2325|consen 335 IILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYS 414 (488)
T ss_pred eeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHH
Confidence 4544433332222221 1110000000 1 0 11111 35677777777777777654 456666666777888889
Q ss_pred ccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcc
Q 035554 175 DQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLR 243 (562)
Q Consensus 175 ~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~ 243 (562)
+...+.+ .+..-+.+.....++..++|++...+....|.++.+.+..+..++...++....+|
T Consensus 415 kiLgp~~------q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~~~r 477 (488)
T KOG2325|consen 415 KILGPRD------QGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVFLKR 477 (488)
T ss_pred HHhCCcc------ccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9998877 67777788888889999999988888888888888777776666555554444333
No 259
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=96.72 E-value=0.00039 Score=75.55 Aligned_cols=176 Identities=10% Similarity=0.056 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHH-HHHHHHHHHHHHhhhc-ccchHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMG-SLYLSSLMGAFLSDSY-LGRYLTCVTFQAFS 112 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~-~Grk~~i~~~~~~~ 112 (562)
+.+..+.++..++.+...++.+++|.|++++|+.++++++.+.+...+ +..++.+++|++..|+ ++.|++.....+..
T Consensus 305 p~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~ 384 (539)
T PF03137_consen 305 PVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVS 384 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHH
Confidence 456677888888999999999999999999999999999999887755 6778999999999995 34566665555544
Q ss_pred HHHHHHH----Hhhhccc---ccCCCC-CCCC-------CCcC----------------CCCCCchHHHHHHHHHHHHHh
Q 035554 113 IIGLLGL----SFATQSF---LLRPHG-CGKI-------GQLC----------------DPHSPAETAIFYISIYLFALG 161 (562)
Q Consensus 113 ~~~~~~~----~~~~~~~---~~~~~~-~~~~-------~~~~----------------~~~~~~~~~~~~~~~~l~g~g 161 (562)
.++.++. .+.+..+ .+...+ .... ...| +..-......+++..++..+.
T Consensus 385 ~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~ 464 (539)
T PF03137_consen 385 IVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFF 464 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHH
Confidence 4444331 1111100 011001 0000 0122 111112345566666665555
Q ss_pred cccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHH-hHHHHHHhhhhhhcccc
Q 035554 162 IGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIAL-NLGCLFSETVLVYAENM 216 (562)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~lg~~~~~~~~~~l~~~ 216 (562)
.+..........-+.+++++ |..+.++..... -+|..=+|++-|.+.+.
T Consensus 465 ~~~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 465 TFMSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp --------------------------------------------------------
T ss_pred HHhcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 55555555666678899888 899999966555 56777889888888774
No 260
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=96.71 E-value=0.048 Score=57.34 Aligned_cols=155 Identities=12% Similarity=-0.029 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIG 115 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~ 115 (562)
..++.-++..+.+++.-+.-..+..|++++ |+++...|..-+...+.+..+.+...++.+| +|.-|+=+.++......
T Consensus 259 ~vflas~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~r-iGlvr~G~~~l~~q~~~ 336 (432)
T PF06963_consen 259 PVFLASFALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKR-IGLVRAGLWSLWWQWVC 336 (432)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHH
Confidence 455555666666666666777888999987 9999999999999999999999999999999 79999888887776655
Q ss_pred HHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHH
Q 035554 116 LLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYF 195 (562)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 195 (562)
..++...-..|. ++....+...++.+..+-=+|.=++.-+..-++-|..|+++ |+...+..
T Consensus 337 L~~~v~~~~~~~-------------~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq 397 (432)
T PF06963_consen 337 LALCVVSFWAPG-------------SPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQ 397 (432)
T ss_pred HHHHHHHHhcCC-------------CCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHH
Confidence 544443311121 00012345566677777778888888888898999898888 99999999
Q ss_pred HHHHhHHHHHHhhhhh
Q 035554 196 YIALNLGCLFSETVLV 211 (562)
Q Consensus 196 ~~~~~lg~~~~~~~~~ 211 (562)
+...|+.-++...++-
T Consensus 398 ~sl~~lf~ll~~~~~i 413 (432)
T PF06963_consen 398 NSLQSLFELLSFVLTI 413 (432)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999998887765443
No 261
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=96.57 E-value=0.019 Score=62.46 Aligned_cols=111 Identities=12% Similarity=0.149 Sum_probs=82.9
Q ss_pred HhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHH
Q 035554 383 PLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQME 462 (562)
Q Consensus 383 ~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~ 462 (562)
++..+++| | ..+..++++..++-+..++. .+.+..++.-++.|++........+.
T Consensus 140 ~lsD~~GR-k-------~~~~~~~~~~~i~~~~~a~a-----------------~~~~~~~~~Rfl~G~~~~~~~~~~~~ 194 (521)
T KOG0255|consen 140 PLSDRFGR-K-------PVLLVSLLLFIIFGILTAFA-----------------PNYWMFLIFRFLSGFFGSGPLTVGFG 194 (521)
T ss_pred ehHhhccc-H-------HHHHHHHHHHHHHHHHHHHh-----------------CcHHHHHHHHHHHHhhccchhHHhHh
Confidence 55557554 2 24566777776666666664 67788888999999999999999999
Q ss_pred HHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 035554 463 FFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGV 537 (562)
Q Consensus 463 ~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~ 537 (562)
+..|..+++.|+.+..+ ......++.+++...+.+.. +| .+.+++..+...+..+.
T Consensus 195 ~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~W----------r~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 195 LVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------DW----------RWLFWIISIPSGLFLLL 250 (521)
T ss_pred hheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------hH----------HHHHHHHHHHHHHHHHH
Confidence 99999999999999999 77777777777777665543 34 56666666666655544
No 262
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.49 E-value=0.016 Score=59.90 Aligned_cols=183 Identities=13% Similarity=0.023 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.+.+++++....-..+|++.+.+..-+. .-|++...+|.......+++.++.+++|.++||.-.-|++.++......+
T Consensus 266 ~~F~il~~~ygi~~g~F~~l~~~l~~~l~-~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v 344 (480)
T KOG2563|consen 266 RQFIILAICYGIGLGLFNSLSTLLNLALC-PSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALV 344 (480)
T ss_pred ccHHHHHHHHhhhHHHHHHHHHHhhhccc-cccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 56677777777777777777766654333 34667788999999999999999999999999943334444444444444
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhcc-CCCCCchhhhhhhhhHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQ-FDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~ 193 (562)
+...+...+. . ....+.++.-..+.|+......|...-+..|. +|..+ +.-.|
T Consensus 345 ~~~~l~~~t~-~------------------~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E-------~tSsG 398 (480)
T KOG2563|consen 345 GTLMLLTCTL-F------------------LGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE-------GTSSG 398 (480)
T ss_pred HHHHHHHhhc-c------------------CCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC-------cccce
Confidence 4322211111 1 11234455555566777777778777777776 45544 34445
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccc----hhHHHHHHHHHHHHHHHHHHhcCcce
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGY----WVLGFWICAGCDILAFSSLLSGTLRY 244 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~----~~~~f~i~~~~~~~~~~~~~~~~~~~ 244 (562)
..+...++-+.+-.++-+...+..+ +...-+.......+..++..+.++++
T Consensus 399 ll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y 453 (480)
T KOG2563|consen 399 LLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDY 453 (480)
T ss_pred eEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhH
Confidence 5555566656655666666666555 33333333333334444444444443
No 263
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.32 E-value=0.029 Score=61.99 Aligned_cols=175 Identities=13% Similarity=0.104 Sum_probs=113.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHH-HHHHHHHHHHHHhhhc-ccchHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMG-SLYLSSLMGAFLSDSY-LGRYLTCVTFQAFS 112 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~-~Grk~~i~~~~~~~ 112 (562)
+-..+..++..++...+-++.+++|.|+.+++|.+.+.+..+++...+ +..++.+++|++.-|+ ++.|.+.....+..
T Consensus 392 ~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~ 471 (735)
T KOG3626|consen 392 PIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCS 471 (735)
T ss_pred chHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHH
Confidence 355677888889999999999999999999999999999999977655 4558888999999986 44566665555544
Q ss_pred HHHHHHH---Hh-hhcc-------------cccCCCC-----------CC---------CC---C---------------
Q 035554 113 IIGLLGL---SF-ATQS-------------FLLRPHG-----------CG---------KI---G--------------- 137 (562)
Q Consensus 113 ~~~~~~~---~~-~~~~-------------~~~~~~~-----------~~---------~~---~--------------- 137 (562)
.++.+.+ .+ .+.. |....++ |+ .. |
T Consensus 472 ~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~ 551 (735)
T KOG3626|consen 472 VLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTS 551 (735)
T ss_pred HHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCC
Confidence 4444331 11 1110 1111111 11 11 0
Q ss_pred -------C-cCCC----------------CCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 138 -------Q-LCDP----------------HSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 138 -------~-~~~~----------------~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
+ .|-+ .-...+..|++..++..+-.+...+....++-+.+++++ |..+.+
T Consensus 552 ~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~------ks~AlG 625 (735)
T KOG3626|consen 552 DGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEE------KSFALG 625 (735)
T ss_pred CCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchh------chhhhH
Confidence 0 2322 112234444444444444445555666677788899988 899999
Q ss_pred HHHHHH-hHHHHHHhhhhhhccc
Q 035554 194 YFYIAL-NLGCLFSETVLVYAEN 215 (562)
Q Consensus 194 ~~~~~~-~lg~~~~~~~~~~l~~ 215 (562)
+..+.. -+|..=+|++-|++.+
T Consensus 626 ~~~~~irllg~IPsPIifG~~ID 648 (735)
T KOG3626|consen 626 FQWMLIRLLGFIPSPIIFGAVID 648 (735)
T ss_pred HHHHHHHHHhcCCchHhhhhhHh
Confidence 966666 5677778999999876
No 264
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=96.29 E-value=0.038 Score=57.34 Aligned_cols=124 Identities=13% Similarity=0.072 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCch---hHHHHH
Q 035554 401 RVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNG---LKSLGI 477 (562)
Q Consensus 401 ~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~---~rg~~~ 477 (562)
.+..|.++..+|.+...+.... . ..+...+...+.+++.+.++|.++.=|+...+..++.+++ .|..+-
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~------~--~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F 74 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIP------P--SLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFF 74 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTS------S--SC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhc------c--hhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhH
Confidence 4667788888888775554211 0 0011233456778889999999999999999999999987 355555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 035554 478 ALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARRYKSI 548 (562)
Q Consensus 478 gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 548 (562)
..+-++.++|+.++..+.+.+.+ +.++...|.+.++.++++.+.++.-.++++++
T Consensus 75 ~~fY~~in~G~~~~~~~~~~i~~----------------~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 75 NWFYWGINIGSLFSPTLVPYIQQ----------------NYGWFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHH----------------CS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred HHHHHHHhhhhHhhcccchhhcc----------------ccchhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 66778889999999887776654 23457788888888888888888776666665
No 265
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=95.95 E-value=0.14 Score=54.01 Aligned_cols=182 Identities=15% Similarity=-0.005 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHh-----hCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccch-------HHH
Q 035554 38 TLLLVNQGLANLAFAGVEVNMVLFAKSV-----LRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRY-------LTC 105 (562)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~~~~~~y~~~~-----lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk-------~~i 105 (562)
+.+++...+-+..+-=..+.+..|.++. +|+ +-...+..+...+...+..|+..++.-+ ++++ .-+
T Consensus 287 ~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~-~vp~~~fQslNp~~Iii~~pI~a~l~~~-l~~~~~~ps~~~KF 364 (498)
T COG3104 287 IPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGF-EVPPAWFQSLNPFFIILFSPILAALWTK-LGRGNKQPSTPIKF 364 (498)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHhhcccccce-ecCHHHHHhhCHHHHHHHHHHHHHHHhH-hhcCCCCCCcchHH
Confidence 3334333344444444556666676553 331 2345667777778888888888888887 4655 134
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhh
Q 035554 106 VTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEK 185 (562)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 185 (562)
.++..+...+.+.+........ +++...+.++++..-+++++|.=+..|...++++.+.|+.-
T Consensus 365 alGl~l~g~~fl~l~~~~~~~~-------------~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~---- 427 (498)
T COG3104 365 ALGLILAGLGFLILLLAGIWFG-------------GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL---- 427 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc-------------CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH----
Confidence 4555566666655554411010 11233568899999999999999999999999999998765
Q ss_pred hhhhhhHHHHHHHHhHHHHHHhhhhhhc------ccccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 186 KSKTSFYSYFYIALNLGCLFSETVLVYA------ENMGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 186 ~~r~~~~~~~~~~~~lg~~~~~~~~~~l------~~~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
.+..++.+.+....|..++..+.+.- .+.......|+..+...++..+.++..
T Consensus 428 --~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~ 486 (498)
T COG3104 428 --KSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLL 486 (498)
T ss_pred --HHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 67888888888888887776666531 122334556666665555444444433
No 266
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=95.37 E-value=0.19 Score=48.85 Aligned_cols=90 Identities=14% Similarity=0.136 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHH
Q 035554 398 ELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGI 477 (562)
Q Consensus 398 ~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~ 477 (562)
|...+.+|.++..+|........+.+ -.+.+.|.+....++.+.+....+........+..|. .||++.
T Consensus 65 p~~~l~iG~~~~~~GY~~~~l~~~~~----------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vv 133 (250)
T PF06813_consen 65 PWVVLLIGAVLGFVGYGLLWLAVSGR----------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVV 133 (250)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCc----------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCcee
Confidence 55566788888888877765543321 1125667776677788888877777777777788985 799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 035554 478 ALSMSSTAIGTYVCSMILSVV 498 (562)
Q Consensus 478 gl~~~~~~lg~~lg~~l~~~i 498 (562)
|+-....++++.+-..+...+
T Consensus 134 gilk~~~GLSaai~t~i~~~~ 154 (250)
T PF06813_consen 134 GILKGFFGLSAAIFTQIYSAF 154 (250)
T ss_pred hhhhHHHHhHHHHHHHHHHHH
Confidence 999999999987766655443
No 267
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=95.15 E-value=0.83 Score=40.90 Aligned_cols=62 Identities=15% Similarity=0.157 Sum_probs=54.2
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035554 437 LSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVV 498 (562)
Q Consensus 437 ~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i 498 (562)
.+.+.+.+.-++.|++.+....+.-.+..+...++.+++..++++.....+.++|+.+.-.+
T Consensus 87 ~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 87 PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999888887765443
No 268
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=93.98 E-value=0.15 Score=52.96 Aligned_cols=142 Identities=13% Similarity=0.020 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH--HHHHHHH
Q 035554 40 LLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQA--FSIIGLL 117 (562)
Q Consensus 40 l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~--~~~~~~~ 117 (562)
+....++|++...++.+.+. +.+.+.-...+.-+...+|.+|..++.--.-. +--|++.+.+.+ +-.+..+
T Consensus 252 L~lVY~aEY~InqGv~~tl~--fp~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~-----~rir~lwils~LQ~~nl~~~~ 324 (402)
T PF02487_consen 252 LFLVYFAEYFINQGVAPTLL--FPNSFFSPRDQYRWYQLLYQLGVFISRSSLPF-----FRIRRLWILSLLQVINLVFLL 324 (402)
T ss_pred HHHHHHHHHHHHhchHHHhc--CCccCCCHHHHHHHHHHHHHHHHhhhhcceee-----eehhhHHHHHHHHHHHHHHHH
Confidence 45556666666666554321 22223333445666666676666665533221 222444443332 2222222
Q ss_pred HHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHH
Q 035554 118 GLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYI 197 (562)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 197 (562)
+.+.-..+| +.+..++..+..|+..|+...+....+.|..++++ |...++....
T Consensus 325 l~s~~~fip--------------------si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsv 378 (402)
T PF02487_consen 325 LQSWYRFIP--------------------SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSV 378 (402)
T ss_pred HHHHHHHhh--------------------HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHH
Confidence 222222222 36667777788899999999999999998877766 8899999999
Q ss_pred HHhHHHHHHhhhhhhcc
Q 035554 198 ALNLGCLFSETVLVYAE 214 (562)
Q Consensus 198 ~~~lg~~~~~~~~~~l~ 214 (562)
+-++|..++.+++-++.
T Consensus 379 sds~GI~lAgll~l~le 395 (402)
T PF02487_consen 379 SDSLGILLAGLLGLPLE 395 (402)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 99999998887766554
No 269
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=93.81 E-value=2.3 Score=47.51 Aligned_cols=132 Identities=13% Similarity=0.098 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchh---HH
Q 035554 398 ELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGL---KS 474 (562)
Q Consensus 398 ~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~---rg 474 (562)
..+.+..+.++..++..+..+.... ..............+.+.++|.+..-|+..++..++.+++. +-
T Consensus 53 ~~~tIl~~~ii~~lG~~llai~a~~---------~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~ 123 (654)
T TIGR00926 53 KFKTILYLSIVYVVGHALLSFGAIP---------SSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRS 123 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCc---------ccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHH
Confidence 3445677777777777666543100 00000112234567888999999999999999999987654 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 035554 475 LGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARRYKS 547 (562)
Q Consensus 475 ~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 547 (562)
....++-++.++|+.+++.+.+.+.... .+.+ ...++...|.+.++.++++.++++...+++++
T Consensus 124 s~F~~fY~~iNiGSlis~~i~~~l~~~~---~~fg------~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~ 187 (654)
T TIGR00926 124 RFFSFFYFAINAGSLISTIITPILRGDV---GCFG------CQDCYPLAFGVPAILMILALIVFMAGSKMYKK 187 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh---cccc------cCcchHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 4555566667888888877776554210 0000 01134667888888888888887766665543
No 270
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=93.75 E-value=0.11 Score=54.03 Aligned_cols=130 Identities=14% Similarity=0.061 Sum_probs=91.6
Q ss_pred cccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchh
Q 035554 360 ASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSI 439 (562)
Q Consensus 360 ~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (562)
+.+....++.-++..|+++...+..-.|++|||| -+..+.++.+++++..++..+......+....+.....+
T Consensus 70 S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRP-------fI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai 142 (498)
T KOG0637|consen 70 SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRP-------FILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAI 142 (498)
T ss_pred cccccccccccceecccccccccccccccccccc-------hHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHH
Confidence 4455666778888889999999889999998776 467788888888888888766544333322211222333
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHH-HHHHHHHHHHHHHHHHHHHHH
Q 035554 440 FWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSL-GIALSMSSTAIGTYVCSMILS 496 (562)
Q Consensus 440 ~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~-~~gl~~~~~~lg~~lg~~l~~ 496 (562)
...++.+-++=++.-.+..+.=++..+.+-.+.+-+ +++.+.++.++|+.+|-.+.+
T Consensus 143 ~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 143 VLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred HHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 444555666666665666555677888777777777 999999999999999966543
No 271
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=93.65 E-value=10 Score=39.39 Aligned_cols=57 Identities=21% Similarity=0.162 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 035554 438 SIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMI 494 (562)
Q Consensus 438 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l 494 (562)
+-+|.+....++|+..+-.....+.++.+.+|++.+..+-.+..+....|-..|..+
T Consensus 342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~ 398 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL 398 (406)
T ss_pred CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 446778889999999999999999999999999999888888888877777777554
No 272
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=92.71 E-value=14 Score=39.52 Aligned_cols=57 Identities=18% Similarity=0.139 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035554 440 FWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILS 496 (562)
Q Consensus 440 ~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~ 496 (562)
..++..+++..+.....+.+.+++-.+++.+..=|++|-+-|+..++|+---..++-
T Consensus 406 ~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL 462 (544)
T PF13000_consen 406 LLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVL 462 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHH
Confidence 334567888888888999999999999999999999999999999999855544433
No 273
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=92.38 E-value=0.26 Score=52.31 Aligned_cols=156 Identities=15% Similarity=-0.013 Sum_probs=89.3
Q ss_pred HHhhC---CChhhhhhHHHHHHHHHHHHHHHHH-HHhhhcccchHHHHHHHHHHHHHHHHHHhh-hcccccCCCCCCCCC
Q 035554 63 KSVLR---QTNAEASNTFSRWMGSLYLSSLMGA-FLSDSYLGRYLTCVTFQAFSIIGLLGLSFA-TQSFLLRPHGCGKIG 137 (562)
Q Consensus 63 ~~~lg---~s~~~~~~~~~~~~~~~~~~~~~~G-~laDr~~Grk~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 137 (562)
++..+ +|+...+.+..+..++..++..+.. +++|+ .-|+++....++.++..+...+. ..+.. ..++.+
T Consensus 244 ~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~--~~R~~~~~t~~~~~~~~l~~~~lv~~~n~--~~Gi~d-- 317 (433)
T PF03092_consen 244 TDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNW--SWRRIFVVTTLVSVLASLFDLLLVTRWNL--DLGIPD-- 317 (433)
T ss_pred eccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHhcccEEEEEEEee--eeCcCC--
Confidence 34566 8888888777666777776666543 44443 66777776666655544432221 11000 000100
Q ss_pred CcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhccccc
Q 035554 138 QLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMG 217 (562)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~ 217 (562)
.+..+.--++..+..+...-....+.+++.|+.. -++.+++.....|+|..++..++..+.+..
T Consensus 318 ----------~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~------Egt~yall~s~~Nlg~~~s~~lg~~l~~~~ 381 (433)
T PF03092_consen 318 ----------QWFALGDTILEEVIGMIAFMPSLVLAARLCPKGS------EGTVYALLASFSNLGSSVSSTLGAFLMELF 381 (433)
T ss_pred ----------eEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1111112223344444444555677899999888 789999999999999999998888776544
Q ss_pred c--------hhHHHHHHHHHHHHHHHHHHhc
Q 035554 218 Y--------WVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 218 ~--------~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
+ -++..+++.++.++.+.+..+.
T Consensus 382 ~vt~~~f~~l~~lili~~~~~ll~l~ll~lL 412 (433)
T PF03092_consen 382 GVTRDDFSNLWLLILICSVIQLLPLPLLFLL 412 (433)
T ss_pred CCCcccccchHHHHHHHHHHHHHHHHHHHHc
Confidence 3 2334444444444444433333
No 274
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.04 E-value=5.4 Score=42.30 Aligned_cols=114 Identities=16% Similarity=0.082 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHhhhc--ccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCC--CchHHHHHHHHH
Q 035554 81 MGSLYLSSLMGAFLSDSY--LGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHS--PAETAIFYISIY 156 (562)
Q Consensus 81 ~~~~~~~~~~~G~laDr~--~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 156 (562)
..+..++..+.+.+++|. +||++.+.++..+..++.++..+. .|.-.|... ...++. .+......+.-+
T Consensus 289 g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~--~p~dap~~~-----t~~~~~~~~~~~~~~~ii~~ 361 (461)
T KOG3098|consen 289 GLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLS--FPNDAPLRP-----TDSPPLLFTPSYYLALIIGF 361 (461)
T ss_pred hHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhcc--ccccCCCCC-----CcccccccccchhHHHHHHH
Confidence 445555556666666543 789999999999888888776554 242111000 000111 123445566667
Q ss_pred HHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhh
Q 035554 157 LFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSET 208 (562)
Q Consensus 157 l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~ 208 (562)
+.|++.+........++++.+| ++ |..+++++-.-..++..++..
T Consensus 362 l~G~~D~~~~t~~~~ii~~~~~-~~------~~~~fsi~kfyq~~~s~v~~f 406 (461)
T KOG3098|consen 362 LLGFGDACFNTQRYVIIALLYP-DD------RAQAFSLFKFYQSVASCVAFF 406 (461)
T ss_pred HHhhHHHHHHHHHHHHHHHHhc-Cc------hHHHHHHHHHHHHHHHHHHhh
Confidence 8899999999999999999984 45 567777766666666554433
No 275
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=91.75 E-value=2.1 Score=41.66 Aligned_cols=140 Identities=19% Similarity=0.122 Sum_probs=89.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcccchH---HHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHH
Q 035554 73 ASNTFSRWMGSLYLSSLMGAFLSDSYLGRYL---TCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETA 149 (562)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (562)
-|.+++.+..+++++.-+...+..| .|.| .+.+..++.++...+..+. +.-+ +...+..
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~--s~~~ve~ymqivf~vs~a~l~Lpilt-~~vs---------------P~kes~~ 345 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSR--SSPKVESYMQIVFLVSIAALLLPILT-SSVS---------------PSKESPS 345 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhc--CCcccchHHHHHHHHHHHHHHHHHHH-hccC---------------CCcCCch
Confidence 5788888888888888877777766 2332 3444444444444333332 1111 1123455
Q ss_pred HHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHH
Q 035554 150 IFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGC 229 (562)
Q Consensus 150 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~ 229 (562)
.-+++..++-...|.++|.+.-+=.+..|++. |...++++..-.|+-.-++....-.-....+-|..|-++...
T Consensus 346 ~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~ 419 (454)
T KOG4332|consen 346 ESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAF 419 (454)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHH
Confidence 55777778888889999999999899899888 899999998888876654432110001123456788888877
Q ss_pred HHHHHHH
Q 035554 230 DILAFSS 236 (562)
Q Consensus 230 ~~~~~~~ 236 (562)
..++.+.
T Consensus 420 ~~~a~i~ 426 (454)
T KOG4332|consen 420 LFVASIL 426 (454)
T ss_pred HHHHHHH
Confidence 7666554
No 276
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=91.57 E-value=7.2 Score=39.54 Aligned_cols=98 Identities=14% Similarity=0.139 Sum_probs=61.3
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCC--CCC
Q 035554 437 LSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWV--PPN 514 (562)
Q Consensus 437 ~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~--~~~ 514 (562)
.++|+.-.+|+++....++..+....-+++....+.-|..-|++.+..-+-+.+-..++. + . -++ +--
T Consensus 324 ~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~iVv---d----~---~g~~L~ir 393 (433)
T KOG3810|consen 324 QHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQSILTLIVV---D----D---RGLGLDIR 393 (433)
T ss_pred cceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEEEE---c----c---cccCCCcc
Confidence 567888889999999998888777677776677788888888887665554444333221 1 0 011 000
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 035554 515 LNDGHLDRFFFLSATVTAMNLGVFVVCARR 544 (562)
Q Consensus 515 l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 544 (562)
.+..-+..+|.+++++.++.....+...++
T Consensus 394 ~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~~~~ 423 (433)
T KOG3810|consen 394 TQFVVYSSYFIVLGVIFLIGFGIEYLMCRR 423 (433)
T ss_pred eeEEEEeehHHHHHHHHHHHHHHHHHHhhc
Confidence 011123457888888888876665544443
No 277
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=89.53 E-value=34 Score=36.90 Aligned_cols=167 Identities=14% Similarity=0.043 Sum_probs=92.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCC---ChhhhhhHHHHHHH-HHHHHHHHHHHHhhhcccchHHHH
Q 035554 31 TGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQ---TNAEASNTFSRWMG-SLYLSSLMGAFLSDSYLGRYLTCV 106 (562)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~---s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grk~~i~ 106 (562)
+.-++.++.+.+..+|..+.|..+.. +++.+=. ++.....+-....+ ...+..++-.+++|+ ++|.+++.
T Consensus 20 ~~E~~k~~~l~~m~f~i~f~y~~lR~-----~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~-~s~~~lFy 93 (491)
T PF03219_consen 20 RSELKKFLPLALMFFFILFNYTILRD-----LKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNR-LSREKLFY 93 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHH
Confidence 34457788888888888777665543 3443322 23333333332222 445566778999999 79999988
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCC---CCCCchH---------H---HHHHHHHHHHHhcccchhhhhh
Q 035554 107 TFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCD---PHSPAET---------A---IFYISIYLFALGIGAPEPALAT 171 (562)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---------~---~~~~~~~l~g~g~g~~~~~~~~ 171 (562)
+....+..-..+.++.- .|.-. .-|-+..|+ .....++ | ++++.-=+.| .-...-....
T Consensus 94 ~~~~~F~~fF~~f~~vl-yP~~~---~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwg--svvlSlLFW~ 167 (491)
T PF03219_consen 94 IIIIPFLGFFALFAFVL-YPNRD---ILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWG--SVVLSLLFWG 167 (491)
T ss_pred HHHHHHHHHHHHHHHHH-hhchh---hcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 77666555444444331 13200 000000000 0000111 1 1222111111 1111123577
Q ss_pred hhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhccc
Q 035554 172 FGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAEN 215 (562)
Q Consensus 172 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~ 215 (562)
+..|.+..++ -.+.++++..+.|+|..+++.+..++.+
T Consensus 168 fAN~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 168 FANEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777 5699999999999999999888887766
No 278
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=87.56 E-value=42 Score=35.61 Aligned_cols=58 Identities=14% Similarity=0.120 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 035554 438 SIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMIL 495 (562)
Q Consensus 438 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~ 495 (562)
+-++..+..+++|+..|......+.+..+.++++.|..+..+..++..+|-..|..+.
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677799999999999999999999999999999999999999999988887654
No 279
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=87.00 E-value=6.6 Score=39.41 Aligned_cols=114 Identities=17% Similarity=0.033 Sum_probs=68.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 32 GGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
..-|.++.+-...+....+|-+.. ++.......+| ....+. ........+++.+.+..+ +|-|.++.++...
T Consensus 26 ~~~knv~i~s~~fl~~f~a~~gl~-nlq~~vn~~lg--~~sl~~----~y~~l~~s~m~~~~~Ir~-~g~K~tm~lav~~ 97 (390)
T KOG3097|consen 26 GILKNVLILSIAFLLTFTAYLGLQ-NLQTSVNYDLG--TVSLGA----LYLSLIDSSMFMPLLIRF-LGTKWTMVLAVFP 97 (390)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHH-HHHHHHhcCcc--cchhhh----hhHHHHHHHHHHHHHHHH-HhhHHHHHHHHHH
Confidence 344677777776666666666553 44444433222 222222 234445555666678887 8999999988766
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccC
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQF 177 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~ 177 (562)
+..... ++-.| .+..++.+-...|+|.+..+..-.+++++.-
T Consensus 98 Y~lyiA----~Nl~p--------------------r~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 98 YALYIA----ANLEP--------------------RYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred HHHHHH----hhcch--------------------hHHhhccHHHhhccccccccccCcceecHHH
Confidence 653332 21112 3445666777789999988887777776643
No 280
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=85.40 E-value=56 Score=34.91 Aligned_cols=168 Identities=15% Similarity=0.013 Sum_probs=101.0
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCC---hhhhhhHHHHHHH-HHHHHHHHHHHHhhhcccchHHHHHH
Q 035554 33 GWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQT---NAEASNTFSRWMG-SLYLSSLMGAFLSDSYLGRYLTCVTF 108 (562)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s---~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grk~~i~~~ 108 (562)
-++.+..+.+..+|..+.++.+.. +++.+..+ +.....+-+.... ++.+..++-+++.++ +.|.+++.+.
T Consensus 25 E~~kflpl~Ll~f~I~~ny~~lR~-----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~-lt~~~vF~~~ 98 (509)
T COG3202 25 ELKKFLPLALLFFCILFNYNLLRS-----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNI-LTREKVFYII 98 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhh-cCHHHHHHHH
Confidence 456777888888888777776654 45555444 4455666666655 677888899999999 7999999887
Q ss_pred HHHHHHHHHHHHhhhcccccC--CCCCCCCCC--cCCCCC-C--------chHHHHHHHHHHHHHhcccchhhhhhhhhc
Q 035554 109 QAFSIIGLLGLSFATQSFLLR--PHGCGKIGQ--LCDPHS-P--------AETAIFYISIYLFALGIGAPEPALATFGAD 175 (562)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~-~--------~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~ 175 (562)
+..+....+++++. -.|.-. |+...-.+| ...+.. . .+...+++.-=+.|.- ...-....+..|
T Consensus 99 ~~~F~~fF~LFa~V-i~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgsl--V~S~lFw~faNe 175 (509)
T COG3202 99 LGFFLGFFALFAFV-IYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSL--VLSLLFWQFANE 175 (509)
T ss_pred HHHHHHHHHHHHHH-HhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 77777666666554 113200 000000000 000100 0 0112222222222211 112234566777
Q ss_pred cCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhccc
Q 035554 176 QFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAEN 215 (562)
Q Consensus 176 ~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~ 215 (562)
....++ -.|.+++++...|++..++..+..++.+
T Consensus 176 itt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 176 ITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred hhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777766 6799999999999999999988888865
No 281
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=84.79 E-value=4.2 Score=43.18 Aligned_cols=154 Identities=12% Similarity=-0.045 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-CCChh-hhhhHHHHHHHHHHHHHHHHHHHhhhcccch-HHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVL-RQTNA-EASNTFSRWMGSLYLSSLMGAFLSDSYLGRY-LTCVTFQAF 111 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~l-g~s~~-~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk-~~i~~~~~~ 111 (562)
|.+|...+..++..+....+.+-.....+..- +.++. -.-..+.+|.++=.+|..+..+.. . -++| +.+.+..+.
T Consensus 269 kki~~~~~~vf~~F~vTL~vFPgv~~~i~~~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~~-~-p~~~~~~l~i~s~~ 346 (437)
T TIGR00939 269 TKVWLLAFSVVFVFTVTLSVFPAITTAVTSSGLGLSNWFYPIICFLLFNLFDWLGRSLTSKFM-W-PDEDSRWLPILSFL 346 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCCccHHHHHHHHHHHHHHHHHhhhhheeE-e-eCCCccchHHHHHH
Confidence 56666666666655555544443333323221 22332 334455566666666665444321 1 1222 133333333
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCC-CCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPH-SPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
=.+-..+..+++.-|.. +.+ --.+-+..++..++.|+.+|........+..+..++++ |..
T Consensus 347 R~iFIPlf~lcn~~~~~------------~~p~~~~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~ 408 (437)
T TIGR00939 347 RVLFIPLFLLCNYPQRS------------RLPVFFPGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REV 408 (437)
T ss_pred HHHHHHHHHHhcCCccc------------cCCeeecccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHH
Confidence 22222222222111100 000 00235566677889999999998888888888877655 556
Q ss_pred hHHHHHHHHhHHHHHHhh
Q 035554 191 FYSYFYIALNLGCLFSET 208 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~ 208 (562)
+-.+...+.++|-.+|..
T Consensus 409 aG~~~~~~l~~Gl~~Gs~ 426 (437)
T TIGR00939 409 AGALMVIFLLVGLALGAV 426 (437)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666777666654
No 282
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=81.79 E-value=3.4 Score=42.80 Aligned_cols=109 Identities=11% Similarity=0.011 Sum_probs=64.1
Q ss_pred HHHHHHHHHhh---CCChhhhhhHHHH-HHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 035554 56 VNMVLFAKSVL---RQTNAEASNTFSR-WMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPH 131 (562)
Q Consensus 56 ~~~~~y~~~~l---g~s~~~~~~~~~~-~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (562)
...|.+..+.- ..++.-.-..... |.+.-.+|.+.+.++-++ +||+.....++ =.+-..+..+++..|. .
T Consensus 264 siFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~--~~r~l~i~v~l-R~lfiPlF~~cn~~~~-~-- 337 (406)
T KOG1479|consen 264 SIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWP--DPRKLTIPVLL-RLLFIPLFLLCNYPPL-P-- 337 (406)
T ss_pred EecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCC--CCceehHHHHH-HHHHHHHHHHhccCCC-C--
Confidence 34555554432 2233445555555 888888888888888776 56665554443 2222222222221110 0
Q ss_pred CCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCC
Q 035554 132 GCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEED 181 (562)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 181 (562)
.--.+-+++++...++|+.+|-.......+..+..++++
T Consensus 338 -----------v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e 376 (406)
T KOG1479|consen 338 -----------VVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSE 376 (406)
T ss_pred -----------ceecCchHHHHHHHHHHhccchHhhheehhcCCCCChHH
Confidence 001246677788889999999988888888888777555
No 283
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=81.41 E-value=37 Score=34.04 Aligned_cols=59 Identities=14% Similarity=0.253 Sum_probs=39.5
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 035554 437 LSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMIL 495 (562)
Q Consensus 437 ~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~ 495 (562)
.++|.....++.-|+-.+..+...+--+.+..+++.|..+|+...+.-.+|..+.+.+.
T Consensus 340 psi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~la 398 (409)
T KOG3880|consen 340 PSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLA 398 (409)
T ss_pred cHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHh
Confidence 34444333444444444444555555566888899999999999988888888876653
No 284
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=81.10 E-value=83 Score=33.74 Aligned_cols=57 Identities=11% Similarity=-0.065 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhhh-hHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 035554 444 PQYVLLGVSEAFVYV-AQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMV 500 (562)
Q Consensus 444 ~~~~l~g~g~~~~~~-~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~ 500 (562)
..|+...+-...+.. .-|.++.|....++-.+..++.....++|..+|+.+...+..
T Consensus 133 ~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 133 LFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444 778999999999999999999999999999999988776553
No 285
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=72.92 E-value=35 Score=35.25 Aligned_cols=105 Identities=9% Similarity=0.114 Sum_probs=66.3
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCC-CCC
Q 035554 437 LSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVP-PNL 515 (562)
Q Consensus 437 ~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~-~~l 515 (562)
.+...+...++++-+..+....+...++.....++..|-++....+...+|-+++..+.-.... .+-+..++. -++
T Consensus 131 p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s---~dF~N~y~rs~P~ 207 (510)
T KOG3574|consen 131 PNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFLALES---PDFCNTYLRSIPL 207 (510)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceeeEecC---hhhhhHHHhcCcC
Confidence 3444455566777788888888889999999999999999988888888888888765432211 011111110 012
Q ss_pred Cch--hhHHHHHHHHHHHHHHHHHHHHHhhc
Q 035554 516 NDG--HLDRFFFLSATVTAMNLGVFVVCARR 544 (562)
Q Consensus 516 ~~~--~~~~~f~~~~~~~~~~~~~~~~~~~~ 544 (562)
+++ .+..+.++.+.+..++.....++.++
T Consensus 208 ~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke 238 (510)
T KOG3574|consen 208 DQGFITLAGYLWFWGALFIVATTLVALLKKE 238 (510)
T ss_pred ccceEEhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 222 23456666677777666666665544
No 286
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=72.29 E-value=27 Score=38.42 Aligned_cols=135 Identities=15% Similarity=0.117 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--------CCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCc
Q 035554 399 LQRVGIGLAIATVAMIIAGIVEQRRLKYASF--------GGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPN 470 (562)
Q Consensus 399 ~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~ 470 (562)
.+.+.++.++..+++................ .|+++.......+...+.+.++|.+..-|...++..++.++
T Consensus 104 y~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~ 183 (571)
T KOG1237|consen 104 YFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDE 183 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCc
Confidence 3355666666666655444443332211111 13333444445566788888889999999999999999982
Q ss_pred ----hhHH--HHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 035554 471 ----GLKS--LGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARR 544 (562)
Q Consensus 471 ----~~rg--~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 544 (562)
+.+. ....-+.+..++|..++..+...+.+. .+| ..-|.+.++.++++.++|+.-.+.
T Consensus 184 ~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~------~~w----------~lgf~i~~~~~~lai~iF~~g~~~ 247 (571)
T KOG1237|consen 184 LDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDN------VGW----------KLGFGIPTVLNALAILIFLPGFPF 247 (571)
T ss_pred cCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhc------ccc----------eeeccHHHHHHHHHHHHHHcCcee
Confidence 2223 445566677778877776655443221 134 456778888888888888776666
Q ss_pred ccccc
Q 035554 545 YKSIS 549 (562)
Q Consensus 545 ~~~~~ 549 (562)
|+.+.
T Consensus 248 y~~~~ 252 (571)
T KOG1237|consen 248 YRYKK 252 (571)
T ss_pred EEeeC
Confidence 66443
No 287
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=67.62 E-value=1.7e+02 Score=30.80 Aligned_cols=62 Identities=15% Similarity=0.204 Sum_probs=48.2
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 035554 437 LSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVM 499 (562)
Q Consensus 437 ~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~ 499 (562)
.+.+++-+..++.|++.+. -..-+++++..+|+++--++++......-+|.+++..++-.+.
T Consensus 92 ~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllv 153 (412)
T PF01770_consen 92 TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLV 153 (412)
T ss_pred CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777888877765 5666899999999999999998888888777777776665443
No 288
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.64 E-value=26 Score=28.82 Aligned_cols=32 Identities=16% Similarity=-0.027 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 035554 81 MGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFS 112 (562)
Q Consensus 81 ~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~ 112 (562)
.+++.+....-||+-|||+|.++.-++..++.
T Consensus 52 fIsGilVGa~iG~llD~~agTsPwglIv~lll 83 (116)
T COG5336 52 FISGILVGAGIGWLLDKFAGTSPWGLIVFLLL 83 (116)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 34444555678999999999998877665543
No 289
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=60.26 E-value=3.3 Score=41.74 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=3.6
Q ss_pred hHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhh
Q 035554 147 ETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSET 208 (562)
Q Consensus 147 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~ 208 (562)
+-+..++..+++|+.+|-.......+..+..++++ |..+-.+...+.++|-.+|..
T Consensus 247 ~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e------~e~aG~~~~~~L~~Gl~~Gs~ 302 (309)
T PF01733_consen 247 SDAWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEE------RELAGSVMSFFLSFGLFIGSV 302 (309)
T ss_dssp --------------------HHHH--------------------------------------
T ss_pred chHHHHHHHHHHHHccchhhhceeeeCCCcCCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888999999999999998888887665 445555555556666655543
No 290
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=60.02 E-value=2.1e+02 Score=29.35 Aligned_cols=45 Identities=16% Similarity=0.131 Sum_probs=28.3
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhHHHHH-----HhhCCchhHHHHHHHHH
Q 035554 437 LSIFWQTPQYVLLGVSEAFVYVAQMEFF-----ASQIPNGLKSLGIALSM 481 (562)
Q Consensus 437 ~~~~~l~~~~~l~g~g~~~~~~~~~~~~-----~~~~P~~~rg~~~gl~~ 481 (562)
.+...+++.=++.|++..+.+..-=++. ..-.|++..+...+...
T Consensus 119 ~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~t 168 (354)
T PF05631_consen 119 SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLAT 168 (354)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 4566777888999999888776544433 34556665555444333
No 291
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=54.68 E-value=1.5e+02 Score=32.04 Aligned_cols=100 Identities=7% Similarity=-0.037 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCC---CCCCch
Q 035554 442 QTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVP---PNLNDG 518 (562)
Q Consensus 442 l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~---~~l~~~ 518 (562)
+...++++-+-.+....++.-++.....++.+|.++......+.+|-+++..+.-.+.. .+-+..|+. .+-.-.
T Consensus 121 Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlalns---~~f~Nky~r~~p~~~glv 197 (544)
T PF13000_consen 121 LTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALNS---PDFCNKYLRSTPSDEGLV 197 (544)
T ss_pred HHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhCC---HHHHHHhcccCCCCCCee
Confidence 33344344444455567777788888889999999998888888888888665544322 111112322 111112
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhc
Q 035554 519 HLDRFFFLSATVTAMNLGVFVVCARR 544 (562)
Q Consensus 519 ~~~~~f~~~~~~~~~~~~~~~~~~~~ 544 (562)
.+..+..+.+.+.++..+...++.+|
T Consensus 198 tl~~yl~fwg~~~l~~T~~v~~~k~E 223 (544)
T PF13000_consen 198 TLSGYLKFWGWVFLIVTILVAFFKKE 223 (544)
T ss_pred eHHHHHHHHHHHHHHHHHHHheEeec
Confidence 33445555566666556555555544
No 292
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=52.98 E-value=2e+02 Score=27.06 Aligned_cols=63 Identities=11% Similarity=0.179 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCc-hhHHHHHHHHHH-HHHHHHHHHHHHHHHhHh
Q 035554 438 SIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPN-GLKSLGIALSMS-STAIGTYVCSMILSVVMV 500 (562)
Q Consensus 438 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~-~~rg~~~gl~~~-~~~lg~~lg~~l~~~i~~ 500 (562)
+.+.+.....+.|++.+...+....+..+..|+ +.|+...+.... ...+|..+++.+.+.+..
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG 157 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566668899998999999999999998 778888888888 577788888766555443
No 293
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=51.92 E-value=83 Score=22.33 Aligned_cols=32 Identities=13% Similarity=0.085 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 035554 79 RWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQA 110 (562)
Q Consensus 79 ~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~ 110 (562)
....+..+.....|+..|+++|.++...+..+
T Consensus 8 ~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~ 39 (55)
T PF09527_consen 8 FTMAAPILVGFFLGYWLDKWFGTSPWFTLIGL 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 34455666667889999999998666554433
No 294
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=45.63 E-value=3e+02 Score=26.92 Aligned_cols=57 Identities=9% Similarity=0.083 Sum_probs=35.7
Q ss_pred hhhhHHHHHHHHhHHHHHHhhhhhhc---cc--ccchhHHHHHHHHHHHHHHHHHHhcCcce
Q 035554 188 KTSFYSYFYIALNLGCLFSETVLVYA---EN--MGYWVLGFWICAGCDILAFSSLLSGTLRY 244 (562)
Q Consensus 188 r~~~~~~~~~~~~lg~~~~~~~~~~l---~~--~~~~~~~f~i~~~~~~~~~~~~~~~~~~~ 244 (562)
|+.......++-|+|+.++-..-..- .+ .-.|...+.+.+++..+-++++.+..++.
T Consensus 4 K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~f 65 (267)
T PF07672_consen 4 KSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNF 65 (267)
T ss_pred cceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55666667777888888764322111 11 12599888888877776666665555444
No 295
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=44.92 E-value=52 Score=29.20 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=21.9
Q ss_pred hhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHH
Q 035554 170 ATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFS 206 (562)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~ 206 (562)
+.+++.-.++++ -|+.+|+-..-.|++-+.-
T Consensus 116 YGilSaSWD~~r------~GSllG~~e~~~N~~r~~~ 146 (153)
T PF11947_consen 116 YGILSASWDPER------EGSLLGWEEFKRNWGRMWE 146 (153)
T ss_pred hhhcccccCCCC------CCCcccHHHHHHhHHHHHH
Confidence 334444456666 6899999999999987643
No 296
>PRK03612 spermidine synthase; Provisional
Probab=42.01 E-value=4.9e+02 Score=28.33 Aligned_cols=52 Identities=12% Similarity=0.195 Sum_probs=27.2
Q ss_pred HHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 035554 447 VLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVM 499 (562)
Q Consensus 447 ~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~ 499 (562)
++.++-.++..|-..-+..+... +.-|...|-....+.+|+.+|+.+.+.+.
T Consensus 118 ~~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vL 169 (521)
T PRK03612 118 LLIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLL 169 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHH
Confidence 34445555555655554443322 12334445555566677777777666443
No 297
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=40.60 E-value=53 Score=32.04 Aligned_cols=62 Identities=13% Similarity=0.132 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHH---------hhhcccchHHH
Q 035554 42 VNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFL---------SDSYLGRYLTC 105 (562)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~l---------aDr~~Grk~~i 105 (562)
...+..-.+.....+++.+|+++ .|.++.....++....+.-.+..++.|.. .|| +|||+..
T Consensus 24 vGHmlNDitAScWFTYlllfltq-iglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr-~G~~~~w 94 (412)
T KOG4830|consen 24 VGHMLNDITASCWFTYLLLFLTQ-IGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDR-IGRRMSW 94 (412)
T ss_pred hhHHHhhHHHHHHHHHHHHHHHH-hcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhh-hcceeee
Confidence 34455555656666778888885 67788888888888899999999988743 568 7988753
No 298
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.57 E-value=1.9e+02 Score=23.97 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=22.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 035554 468 IPNGLKSLGIALSMSSTAIGTYVCSMILSVVMV 500 (562)
Q Consensus 468 ~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~ 500 (562)
..++.++..+++-..+=.+++.+-....|++..
T Consensus 35 ~a~s~k~~~~a~klssefIsGilVGa~iG~llD 67 (116)
T COG5336 35 SAESIKGYAQAFKLSSEFISGILVGAGIGWLLD 67 (116)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788887777777777766666676554
No 299
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=32.47 E-value=6.7e+02 Score=27.09 Aligned_cols=42 Identities=12% Similarity=-0.096 Sum_probs=37.5
Q ss_pred hHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 035554 459 AQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMV 500 (562)
Q Consensus 459 ~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~ 500 (562)
--|.++.+..+.+.-.+..+++....++|..+++.+...+..
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999999988776655
No 300
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=29.61 E-value=7.4e+02 Score=26.73 Aligned_cols=95 Identities=9% Similarity=0.029 Sum_probs=56.6
Q ss_pred HHHHHHHHhhh----hhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHH
Q 035554 447 VLLGVSEAFVY----VAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDR 522 (562)
Q Consensus 447 ~l~g~g~~~~~----~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~ 522 (562)
++..++|...+ ---|.++.|+...+.-.+..+++++..+++..+++.+.....+... .+.+ ...+..++.
T Consensus 152 ~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~-----~~~~-~~~~~~~~~ 225 (509)
T COG3202 152 LFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRD-----ALAS-EFKDLLLQI 225 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchh-----hHhH-HHHHHHHHH
Confidence 44445555433 3557889999999999999999999999999888877665443110 0110 011112334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccc
Q 035554 523 FFFLSATVTAMNLGVFVVCARRYKS 547 (562)
Q Consensus 523 ~f~~~~~~~~~~~~~~~~~~~~~~~ 547 (562)
.+.+.++.++++...+....+..-.
T Consensus 226 ~~~vi~~~~~i~~~l~~~~~r~il~ 250 (509)
T COG3202 226 LFIVIVILGIIAILLYRYINRNVLT 250 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4455555555555555555544333
No 301
>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=28.73 E-value=4.8e+02 Score=24.26 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCc
Q 035554 438 SIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPN 470 (562)
Q Consensus 438 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~ 470 (562)
......+.+.+.++.|++.+....++....-|+
T Consensus 172 ~~~~~~~~~~~l~~~Eg~ltg~~v~~l~~~rP~ 204 (205)
T PF01891_consen 172 LVQAYLPSHLLLAFPEGFLTGMVVTFLVVYRPE 204 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 334456677888999999998888887776663
No 302
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=26.94 E-value=2.2e+02 Score=23.28 Aligned_cols=25 Identities=8% Similarity=-0.117 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhhhcccchHHHHHH
Q 035554 84 LYLSSLMGAFLSDSYLGRYLTCVTF 108 (562)
Q Consensus 84 ~~~~~~~~G~laDr~~Grk~~i~~~ 108 (562)
..+...+.|.--|+.+|-++.+.+.
T Consensus 55 pil~G~~lG~WLD~~~~t~~~~tl~ 79 (100)
T TIGR02230 55 PTLLGVAVGIWLDRHYPSPFSWTLT 79 (100)
T ss_pred HHHHHHHHHHHHHhhcCCCcHHHHH
Confidence 3344456667777778876644444
No 303
>PF06237 DUF1011: Protein of unknown function (DUF1011); InterPro: IPR009357 This is a family of eukaryotic proteins, that include the receptor for porcine endogenous retrovirus subgroup A (PERV-A) [].
Probab=25.55 E-value=3.8e+02 Score=22.01 Aligned_cols=86 Identities=16% Similarity=0.043 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
++...++......+...+|+.+....|---..| ...--+..+...++..++++++-++-.| ..+.+-....+....
T Consensus 4 ~~~~~Ll~l~~~vn~ltNGvlPSVQsYSclPYG--~~aYHLa~tL~~iAnPlacfla~f~~~r--Sl~~l~~lt~~~~~~ 79 (101)
T PF06237_consen 4 AQYAFLLVLLAIVNALTNGVLPSVQSYSCLPYG--NNAYHLAVTLSSIANPLACFLAMFLPIR--SLRFLGVLTVLGTIF 79 (101)
T ss_pred hHHHHHHHHHHHHHHHHcCCcccchhhcccccc--chHHHHHHHHHHHhhHHHHHHHHHHHhc--hHHHHHHHHHHHHHH
Confidence 466777777888889999999988888754444 3344444556677888888887777665 555555555555555
Q ss_pred HHHHHHhhhc
Q 035554 115 GLLGLSFATQ 124 (562)
Q Consensus 115 ~~~~~~~~~~ 124 (562)
+...+..+.-
T Consensus 80 ~~Y~m~~A~l 89 (101)
T PF06237_consen 80 GAYIMALAAL 89 (101)
T ss_pred HHHHHHHHHc
Confidence 6666666543
No 304
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.22 E-value=5.5e+02 Score=28.00 Aligned_cols=31 Identities=3% Similarity=0.125 Sum_probs=25.2
Q ss_pred CChhhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 035554 68 QTNAEASNTFSRWMGSLYLSSLMGAFLSDSY 98 (562)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~ 98 (562)
.+++.-|.+.++..+...++.+++|+.+-|.
T Consensus 356 lSPs~RGsLmT~~~~l~v~~G~~agY~s~rl 386 (628)
T KOG1278|consen 356 LSPSSRGSLMTAMVLLFVFMGFVAGYVSARL 386 (628)
T ss_pred CCccccccHHHHHHHHHHHHHHhhhhhhhhh
Confidence 4777778788888888888888999998884
No 305
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=24.52 E-value=8.1e+02 Score=25.43 Aligned_cols=98 Identities=11% Similarity=-0.026 Sum_probs=61.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHH
Q 035554 73 ASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFY 152 (562)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (562)
.|..=.+..+.+.++.+..|++--. +.|..-++++..-...+.++...+ . ..+.|..+
T Consensus 273 NG~veAv~tlLGa~~~~~~g~l~i~-w~r~g~~ll~~~s~~~agllf~m~-~--------------------t~~Iw~~Y 330 (433)
T KOG3810|consen 273 NGAVEAVSTLLGAIAALAAGYLNIN-WNRWGDLLLAVGSAVQAGLLFIMA-Q--------------------TQHIWVCY 330 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHheeec-cchhhHHHHHHHHHHhhhhhhhhh-c--------------------ccceehhh
Confidence 4555566788889999999999877 577654444433222222222222 0 12467777
Q ss_pred HHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHH
Q 035554 153 ISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIA 198 (562)
Q Consensus 153 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 198 (562)
++-++...-.....+....-++.-...+. -+..||++...
T Consensus 331 a~yvlfr~~y~l~itiA~~~iA~nL~~e~------~gLvFGiNTFv 370 (433)
T KOG3810|consen 331 AGYVLFRVIYQLTITIATFQIARNLSSEL------FGLVFGINTFV 370 (433)
T ss_pred hhHHHHHhhHhhhhhHHHHHHHHhhhhhh------heeeeehHHHH
Confidence 77777777777777777677776666666 67888775544
No 306
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=23.25 E-value=2.9e+02 Score=31.37 Aligned_cols=53 Identities=17% Similarity=0.128 Sum_probs=34.1
Q ss_pred HHHHHhhh---cccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhccc
Q 035554 90 MGAFLSDS---YLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGA 164 (562)
Q Consensus 90 ~~G~laDr---~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~ 164 (562)
+++-++|. +-||.|-++++.++++++.+...+.. | ..+++.++..+.+++.++
T Consensus 42 ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll~--~--------------------~p~~~~~~l~~~tf~~~m 97 (701)
T TIGR01667 42 IAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLLF--P--------------------KPWLFPFLLTLLTFGFIL 97 (701)
T ss_pred HhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHh--c--------------------chHHHHHHHHHHHHHHHH
Confidence 34446664 34567888888888888777666542 2 366677777666666544
No 307
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=23.24 E-value=1.7e+02 Score=22.63 Aligned_cols=43 Identities=14% Similarity=0.278 Sum_probs=25.3
Q ss_pred HHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
-+.+....++++++- +.|++.+. .+..+++.++..++++++..
T Consensus 11 ~l~~~il~~~~iisf-i~Gy~~q~--~~~~~~~~~~g~~~~~lv~v 53 (76)
T PF06645_consen 11 KLMQYILIISAIISF-IVGYITQS--FSYTFYIYGAGVVLTLLVVV 53 (76)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHhhee
Confidence 344555666666664 66777664 45566666665555555443
No 308
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=22.42 E-value=2.4e+02 Score=24.54 Aligned_cols=24 Identities=4% Similarity=0.054 Sum_probs=18.4
Q ss_pred HhhCCchhHHHHHHHHHHHHHHHH
Q 035554 465 ASQIPNGLKSLGIALSMSSTAIGT 488 (562)
Q Consensus 465 ~~~~P~~~rg~~~gl~~~~~~lg~ 488 (562)
.+++|+..|....+.++.......
T Consensus 61 kdi~P~~~R~~i~~~~~~~~~~~k 84 (137)
T PF04281_consen 61 KDIFPPSVRNWISSTVSTTSSAVK 84 (137)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHH
Confidence 488999999998888776555444
No 309
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=22.37 E-value=1.2e+03 Score=26.83 Aligned_cols=20 Identities=20% Similarity=-0.064 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 035554 103 LTCVTFQAFSIIGLLGLSFA 122 (562)
Q Consensus 103 ~~i~~~~~~~~~~~~~~~~~ 122 (562)
.++.+|.++..+|..++++.
T Consensus 497 wVi~IGsFlST~GAgLQsLt 516 (1075)
T KOG2082|consen 497 WVIVIGSFLSTCGAGLQSLT 516 (1075)
T ss_pred eeeehhHHHHHhHHHHhhhc
Confidence 47889999999999988876
No 310
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=22.10 E-value=7.1e+02 Score=24.40 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 147 ETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 147 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
....+++.-++.|+..=+..+..-.+--| +++.+|++ .+..+|+
T Consensus 203 ~~~~f~I~~Fl~G~f~WgiQ~ViL~lPhE-yK~~~pk~---ig~~Fg~ 246 (267)
T PF07672_consen 203 GFAFFYIFGFLAGFFLWGIQGVILNLPHE-YKGYNPKK---IGIQFGL 246 (267)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhcChhh-hcCCCcce---ehhHHHH
Confidence 46667777777776665555554443333 44444321 3444444
No 311
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=21.64 E-value=4.4e+02 Score=27.52 Aligned_cols=75 Identities=13% Similarity=-0.048 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
..+.+-...+..+.+--..-....+|+.+--|-|...++.--.+-.....+..++.|-.-|+ ..|+|++...+.+
T Consensus 28 ~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg-~sr~Kvi~~~L~l 102 (503)
T KOG2601|consen 28 TVIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDG-MSRVKVIQTWLLL 102 (503)
T ss_pred eeehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcc-hhHHHHHHHHHhh
Confidence 34455555555555555555566777776555444444444444445556666778888899 7999999887765
No 312
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=21.04 E-value=3.7e+02 Score=30.56 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=33.7
Q ss_pred HHHHHhhh---cccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhccc
Q 035554 90 MGAFLSDS---YLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGA 164 (562)
Q Consensus 90 ~~G~laDr---~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~ 164 (562)
+++-++|. +-||.|-+.+++++++++++...+.. | .++++.++..+.+++.++
T Consensus 42 ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~--~--------------------~p~lf~~~l~~~tf~~~m 97 (704)
T TIGR01666 42 IAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELLF--G--------------------KPWLFAVGLTVSTFGFIM 97 (704)
T ss_pred HhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh--c--------------------CcHHHHHHHHHHHHHHHH
Confidence 33446664 35677778888888887776655541 2 366777777776666544
Done!