Query 035554
Match_columns 562
No_of_seqs 174 out of 1957
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 06:03:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035554.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035554hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 100.0 4.5E-29 1.5E-33 269.5 28.5 458 32-553 9-514 (524)
2 4aps_A DI-OR tripeptide H+ sym 100.0 2.6E-28 8.8E-33 261.2 33.8 434 31-549 9-479 (491)
3 1pw4_A Glycerol-3-phosphate tr 99.9 3.3E-25 1.1E-29 233.9 25.8 398 33-544 26-436 (451)
4 3o7q_A L-fucose-proton symport 99.9 5.8E-23 2E-27 215.9 34.9 359 31-502 22-408 (438)
5 4gc0_A D-xylose-proton symport 99.9 1.5E-22 5.2E-27 216.2 29.7 408 70-555 54-476 (491)
6 2gfp_A EMRD, multidrug resista 99.9 8.6E-22 2.9E-26 202.9 17.7 167 38-235 3-169 (375)
7 2cfq_A Lactose permease; trans 99.8 8.9E-21 3E-25 198.7 13.6 395 35-547 7-405 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 9.8E-14 3.3E-18 145.8 14.2 179 34-240 251-433 (451)
9 3o7q_A L-fucose-proton symport 99.4 2.5E-12 8.7E-17 134.5 16.2 169 35-236 258-428 (438)
10 2cfq_A Lactose permease; trans 99.4 2.7E-12 9.1E-17 134.1 13.2 175 35-239 220-398 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.3 2.1E-11 7.2E-16 129.7 14.6 185 36-242 284-473 (491)
12 4gc0_A D-xylose-proton symport 99.0 3.2E-09 1.1E-13 112.6 15.9 182 36-242 277-464 (491)
13 2gfp_A EMRD, multidrug resista 99.0 8.2E-11 2.8E-15 120.5 1.8 165 35-228 199-364 (375)
14 2xut_A Proton/peptide symporte 98.3 1.2E-06 4E-11 93.7 7.9 150 72-242 336-504 (524)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=4.5e-29 Score=269.48 Aligned_cols=458 Identities=21% Similarity=0.270 Sum_probs=275.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhC------CChhhhhhHHHHHHHHHHHHHHHHHHHhhhcc-cchHH
Q 035554 32 GGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLR------QTNAEASNTFSRWMGSLYLSSLMGAFLSDSYL-GRYLT 104 (562)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg------~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grk~~ 104 (562)
.++|.++.+.+..++.++++|++.++++.|+++++| ++..+.+++.+.+.++..++.+++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~ 87 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNT 87 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHH
Confidence 445778889999999999999999999999999999 999999999999999999999999999999 8 99999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchh
Q 035554 105 CVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKE 184 (562)
Q Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 184 (562)
+.++.++..++.+++.++ + .+.+.++++|++.|++.+...|+..+++.|++|+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~---~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--- 142 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIF---E-------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN--- 142 (524)
T ss_dssp HHHHHHHHHHHHHHHHHT---S-------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---
T ss_pred HHHHHHHHHHHHHHHHHh---c-------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---
Confidence 999999999999888776 2 037788999999999999999999999999999887
Q ss_pred hhhhh---hhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHH
Q 035554 185 KKSKT---SFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVI 261 (562)
Q Consensus 185 ~~~r~---~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (562)
|+ ..+++++...++|..++|.+++++.+..+|++.|++.+++.+++.++++...++.+.++|++++..+..+..
T Consensus 143 ---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (524)
T 2xut_A 143 ---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVI 219 (524)
T ss_dssp ---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-------------
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHH
Confidence 64 455669999999999999999999888899999999888777766665554443332223222211111111
Q ss_pred HHHHhhhcccC-------------------CCCCCC-c--------cccchhhhhcc--------Cc-ccccccCchhHH
Q 035554 262 VASLRKINLEM-------------------PTNGGG-L--------FEVHVREYEAN--------GT-RRILHTNDFKFL 304 (562)
Q Consensus 262 ~~~~~~~~~~~-------------------~~~~~~-~--------~~~~~~~~~~~--------~~-~~~~~~~~~~~~ 304 (562)
....++++... ...... . +...+...... .. ......+..+.+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (524)
T 2xut_A 220 RSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVL 299 (524)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHH
T ss_pred HHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHH
Confidence 11111110000 000000 0 00000000000 00 000000000000
Q ss_pred HHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHh
Q 035554 305 DRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPL 384 (562)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 384 (562)
....... ..........+..+.+..+....+... + .+.+.+...+.+..++..++.+++..+.
T Consensus 300 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (524)
T 2xut_A 300 RILVLFA--------------LVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPA 362 (524)
T ss_dssp HHHHHHT--------------TSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC----
T ss_pred HHHHHHH--------------HHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHH
Confidence 0000000 000000111123334444433333221 1 2455566666777777777877665555
Q ss_pred hhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHH
Q 035554 385 YLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFF 464 (562)
Q Consensus 385 ~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~ 464 (562)
.+|+++ +.++.+.+..|.++.+++++...+....+ +.....+.+++++.+++.+++++...+..++++
T Consensus 363 ~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 430 (524)
T 2xut_A 363 IERMGV----KLTALRKMGAGIAITGLSWIVVGTIQLMM--------DGGSALSIFWQILPYALLTFGEVLVSATGLEFA 430 (524)
T ss_dssp ------------CCHHHHHTHHHHHHHHHHTTTTTTTTT--------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTH
T ss_pred HHhcCC----CCChHHHHHHHHHHHHHHHHHHHHHHHHh--------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555432 23455667778877777776654431100 001124567778899999999999999999999
Q ss_pred HhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCC-CCCchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 035554 465 ASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPP-NLNDGHLDRFFFLSATVTAMNLGVFVVCAR 543 (562)
Q Consensus 465 ~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~-~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 543 (562)
.+.+|+++||+++|++++..++|+.+++.+.+.+.+.+. .+|.++ ..+. ....|++.+++++++.++++++.+
T Consensus 431 ~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 431 YSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp HHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC----
T ss_pred HHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----ccccccccccc--cccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999886543110 012100 0010 122377778888888888777777
Q ss_pred cccccchhhh
Q 035554 544 RYKSISLQKQ 553 (562)
Q Consensus 544 ~~~~~~~~~~ 553 (562)
+++++..++.
T Consensus 505 ~~~~~~~~~~ 514 (524)
T 2xut_A 505 SYQMQDHYRQ 514 (524)
T ss_dssp ----------
T ss_pred Hhccchhhhh
Confidence 7666554433
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=2.6e-28 Score=261.22 Aligned_cols=434 Identities=15% Similarity=0.225 Sum_probs=283.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh-----hCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHH
Q 035554 31 TGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSV-----LRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTC 105 (562)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~-----lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i 105 (562)
++++|..+.+.+..++.++++|++.++++.|++++ +|++..+.+++.+.+.++..++.+++|+++||++|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~ 88 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAV 88 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 45678899999999999999999999999999998 9999999999999999999999999999999933999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhh
Q 035554 106 VTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEK 185 (562)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 185 (562)
.++.++..++.+++.++ + +.+.++++|++.|++.+...|+..+++.|++|+++++
T Consensus 89 ~~~~~~~~~~~~~~~~~---~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~-- 143 (491)
T 4aps_A 89 FWGGVLIMLGHIVLALP---F--------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR-- 143 (491)
T ss_dssp HHHHHHHHHHHHHHHSC---C--------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH--
T ss_pred HHHHHHHHHHHHHHHHh---h--------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc--
Confidence 99999999999888775 2 3667899999999999999999999999999987622
Q ss_pred hhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeec---CCCCC-chhHHHHHH
Q 035554 186 KSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHF---KPSGN-PLSRFSQVI 261 (562)
Q Consensus 186 ~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~ 261 (562)
|+.++++++...++|..++|.+++++.+..||++.|++.++..+++.++++...++...+ +|+.+ ..++..+..
T Consensus 144 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
T 4aps_A 144 --RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLL 221 (491)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHH
T ss_pred --ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHH
Confidence 677888899999999999999999999889999999998877766666554443322211 11111 111111100
Q ss_pred H---------------HHHhhhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHh-hhccc-cc-ccCCCCC
Q 035554 262 V---------------ASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAI-MTSAD-IT-TNEDQNP 323 (562)
Q Consensus 262 ~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~-~~~~~~~ 323 (562)
. ....+ +. . ..+....... ......... ..... .. ...+.+.
T Consensus 222 ~~~g~~l~~~~~~~~~~~~~~-~~------~-~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (491)
T 4aps_A 222 VKVSLAVAGFIAIIVVMNLVG-WN------S-LPAYINLLTI------------VAIAIPVFYFAWMISSVKVTSTEHLR 281 (491)
T ss_dssp HHCCCCCHHHHHHHHHHHHHS-SC------C-TTHHHHHHHH------------HHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHHhcc-Cc------c-cccchhhhhH------------HHHHHHHHHHHHHhhcccccHHHHHH
Confidence 0 00000 00 0 0000000000 000000000 00000 00 0000000
Q ss_pred --ccceeeh--------hhhhhhhhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCC
Q 035554 324 --NQWRLCT--------VTQVEEMLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRP 393 (562)
Q Consensus 324 --~~~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~ 393 (562)
..+.+.. ........+.|..+..+.+ ..+.+.....+.+..++..++.+++ .+|+++|+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l----~~r~~~r~- 350 (491)
T 4aps_A 282 VVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS------WFPVSWFQSLNPLFIMLYTPFFAWL----WTAWKKNQ- 350 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS------SSCSGGGTTHHHHHHHHHHHHHHHH----HHHTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC------ccCHHHHhccchHHHHHHHHHHHHH----HHHHhccC-
Confidence 0000000 0001112333444322221 1345666677777777777777654 34655422
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhH
Q 035554 394 KTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLK 473 (562)
Q Consensus 394 ~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~r 473 (562)
......+..+.++.++++....+..... + .....+.++.++.+++.+++++...|..++++.+..|++.|
T Consensus 351 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~ 420 (491)
T 4aps_A 351 --PSSPTKFAVGLMFAGLSFLLMAIPGALY-------G-TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFN 420 (491)
T ss_dssp ----CHHHHHHHHHHHHHHHTTTHHHHHHC-------C-CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCS
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHHHHhc-------C-CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHH
Confidence 3455667788888888877776653210 0 01234667788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 035554 474 SLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARRYKSIS 549 (562)
Q Consensus 474 g~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (562)
|+++|++++...+|..+++.+.+.+.+ .++...|.+.++++++..++.++..++.+++.
T Consensus 421 g~~~g~~~~~~~~g~~i~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (491)
T 4aps_A 421 SQMMSMWFLSSSVGSALNAQLVTLYNA-----------------KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGLM 479 (491)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHGGGGGG-----------------SSTTHHHHHTHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988776543 12245677788888887777777766655543
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.94 E-value=3.3e-25 Score=233.88 Aligned_cols=398 Identities=10% Similarity=0.019 Sum_probs=247.2
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 035554 33 GWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFS 112 (562)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~ 112 (562)
+++.++.+.+..++..+..+.+.+.++.+.+ ++ .+..+.|++.+.+.++..++.++.|+++|| +|||+++.++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVE-QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTS-ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHH
Confidence 3456667777777777777777777766554 56 999999999999999999999999999999 79999999999999
Q ss_pred HHHHHHHHh----hhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhh
Q 035554 113 IIGLLGLSF----ATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSK 188 (562)
Q Consensus 113 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 188 (562)
+++.+++++ + + +.+.++++|++.|++.+...++..+++.|++|+++ |
T Consensus 103 ~~~~~~~~~~~~~~---~--------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r 153 (451)
T 1pw4_A 103 AAVMLFMGFVPWAT---S--------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------R 153 (451)
T ss_dssp HHHHHHHHHCHHHH---S--------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------H
T ss_pred HHHHHHHHhhhhcc---c--------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------h
Confidence 999998887 5 2 26678999999999999999999999999999887 9
Q ss_pred hhhHHHHHHHHhHHHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhh
Q 035554 189 TSFYSYFYIALNLGCLFSETVLVYAENMGY-WVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRK 267 (562)
Q Consensus 189 ~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~-~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (562)
++++++.+...++|..++|.+++++.+..+ |++.|++.+++.++..++.+...++.+.+....+. ++ .
T Consensus 154 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~ 222 (451)
T 1pw4_A 154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-EE----------Y 222 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-TT----------T
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-hh----------h
Confidence 999999999999999999999999888788 99999988876665554433332221111100000 00 0
Q ss_pred hcccCCCCCCCccccchhhhhccCccc----ccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHH
Q 035554 268 INLEMPTNGGGLFEVHVREYEANGTRR----ILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVE 343 (562)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 343 (562)
+...+ . +.++++......++ ...++. .+.......... .........+.+.|..
T Consensus 223 -~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~ 280 (451)
T 1pw4_A 223 -KNDYP---D---DYNEKAEQELTAKQIFMQYVLPNK-LLWYIAIANVFV--------------YLLRYGILDWSPTYLK 280 (451)
T ss_dssp -CCC-------------------CCTHHHHHHTSSCH-HHHHHHHHHHHH--------------HHHHHHHHHHHHHHBT
T ss_pred -ccccc---c---cchhhhhcccccccchHHHHHcCH-HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 00000 0 00000000000000 000000 000000000000 0000000112222222
Q ss_pred HhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhh--ccCCCCCCChhHHHHHHHHHHH-HHHHHHHHHH
Q 035554 344 QGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKV--AKRRPKTPSELQRVGIGLAIAT-VAMIIAGIVE 420 (562)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~--~~~~~~~~~~~~~i~~g~ll~~-~~~~~~~~~~ 420 (562)
+..+.+ ....+.......+..++..++.. .+.+|+ ++ .+.+..+.++.. ++++...+.
T Consensus 281 ~~~g~~------~~~~~~~~~~~~~~~~~~~~~~g----~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~- 341 (451)
T 1pw4_A 281 EVKHFA------LDKSSWAYFLYEYAGIPGTLLCG----WMSDKVFRGN--------RGATGVFFMTLVTIATIVYWMN- 341 (451)
T ss_dssp TBSCCC------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHTSTTC--------HHHHHHHHHHHHHHHHHHTTSC-
T ss_pred HhcCCC------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhcCC--------chhHHHHHHHHHHHHHHHHHHh-
Confidence 111110 11112222233333333333333 233343 22 223334433333 444333221
Q ss_pred HHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHhH
Q 035554 421 QRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAI-GTYVCSMILSVVM 499 (562)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~l-g~~lg~~l~~~i~ 499 (562)
...+.+......++.|++.+...+..+.+..+..|++.||+++|+.+....+ |..+++.+.+.+.
T Consensus 342 --------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~ 407 (451)
T 1pw4_A 342 --------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 407 (451)
T ss_dssp --------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1125556667778888888888888899999999999999999999999999 9999999998776
Q ss_pred hhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 035554 500 VLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARR 544 (562)
Q Consensus 500 ~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 544 (562)
+.. ++...|++.+++.+++.+..+...++
T Consensus 408 ~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 408 DFF----------------GWDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HSS----------------CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhc----------------CcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 521 23567777777777777766655443
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.93 E-value=5.8e-23 Score=215.94 Aligned_cols=359 Identities=13% Similarity=0.012 Sum_probs=229.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 035554 31 TGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQA 110 (562)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~ 110 (562)
+.+++.++.+....++..+......+.+|. +.+++|++..+.+++.+.+.++..++.++.|+++|| +|||+++.++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHH
Confidence 344566666667777777777666665555 677899999999999999999999999999999999 799999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
+..++.+++......+ +.+.++++|++.|++.+...+...+++.|++|+++ |++
T Consensus 100 ~~~~~~~~~~~~~~~~--------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~ 153 (438)
T 3o7q_A 100 LYALGAALFWPAAEIM--------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHF 153 (438)
T ss_dssp HHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHH
T ss_pred HHHHHHHHHHhccccc--------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHH
Confidence 9999998883321112 38889999999999999999999999999999988 999
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcc-cccc-------------------------hhHHHHHHHHHHHHHHHHHHhcC-cc
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAE-NMGY-------------------------WVLGFWICAGCDILAFSSLLSGT-LR 243 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~-~~~~-------------------------~~~~f~i~~~~~~~~~~~~~~~~-~~ 243 (562)
.+++++...++|..++|.+++++. +..+ |++.|++.++...+..++++..+ |+
T Consensus 154 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~ 233 (438)
T 3o7q_A 154 RLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPA 233 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999987 5444 89999776665555444443322 11
Q ss_pred eeecCCCCCchhHHHHHHHHHHhhhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCC
Q 035554 244 YRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNP 323 (562)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (562)
.+.+++++++..+..... ... .+++..+.-.......
T Consensus 234 ~~~~~~~~~~~~~~~~~~-------------------------------~~~-~~~~~~~~~~~~~~~~----------- 270 (438)
T 3o7q_A 234 LQSDNHSDAKQGSFSASL-------------------------------SRL-ARIRHWRWAVLAQFCY----------- 270 (438)
T ss_dssp CTTTCCCCSSTTSHHHHH-------------------------------HHH-TTCSHHHHHHHHHHHH-----------
T ss_pred ccccccccccccchhhhH-------------------------------HHH-HhChHHHHHHHHHHHH-----------
Confidence 110000000000000000 000 0011001000000000
Q ss_pred ccceeehhhhhhhhhhHH-HHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHH
Q 035554 324 NQWRLCTVTQVEEMLSLF-VEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRV 402 (562)
Q Consensus 324 ~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i 402 (562)
.........+.+.| ..+..+.+. ...+.......+..++..++.. .+.+|.+ +.+.+
T Consensus 271 ----~~~~~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~g----~l~~r~~--------~~~~~ 328 (438)
T 3o7q_A 271 ----VGAQTACWSYLIRYAVEEIPGMTA------GFAANYLTGTMVCFFIGRFTGT----WLISRFA--------PHKVL 328 (438)
T ss_dssp ----HHHHHHHHHHHHHHHHHHSTTCCH------HHHHHHHHHHHHHHHHHHHHHH----HHHHHSC--------HHHHH
T ss_pred ----HHHHHHHHHHHHHHhhhccCCcch------hHHHHHHHHHHHHHHHHHHHHH----HHHHHhc--------chHHH
Confidence 00000111234445 443222221 1112222232333333333333 3334443 23345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHH
Q 035554 403 GIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMS 482 (562)
Q Consensus 403 ~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~ 482 (562)
..+.++.+++++...+. .+. +.....++.+++.+...|..+++..+..|++ ++.++++..
T Consensus 329 ~~~~~~~~~~~~~~~~~-----------------~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~- 388 (438)
T 3o7q_A 329 AAYALIAMALCLISAFA-----------------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV- 388 (438)
T ss_dssp HHHHHHHHHHHHHHHHC-----------------CHH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHc-----------------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-
Confidence 56666666665554432 222 3345568888898989999999999999977 999999877
Q ss_pred HHHHHHHHHHHHHHHhHhhh
Q 035554 483 STAIGTYVCSMILSVVMVLT 502 (562)
Q Consensus 483 ~~~lg~~lg~~l~~~i~~~~ 502 (562)
...+|..+++.+.+.+.+..
T Consensus 389 ~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 389 MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp HTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 67799999999999876643
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.91 E-value=1.5e-22 Score=216.19 Aligned_cols=408 Identities=12% Similarity=0.084 Sum_probs=221.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHH
Q 035554 70 NAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETA 149 (562)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (562)
..+.|++.+.+.++..+++++.|+++|| +|||+++.++.+++.++.++++++.......... ..-......+.+
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~-----~~~~~~~a~~~~ 127 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPELGFTSINPD-----NTVPVYLAGYVP 127 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSS-----SSCCGGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcch-----hHHHHHHhhhHH
Confidence 3567888999999999999999999999 7999999999999999999887641000000000 000000023588
Q ss_pred HHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhccc--------ccchhH
Q 035554 150 IFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAEN--------MGYWVL 221 (562)
Q Consensus 150 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~--------~~~~~~ 221 (562)
.++++|+++|+|.|...+..+.++.|..|+++ |++..++++.+..+|..+++.++..+.. ..+|+.
T Consensus 128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (491)
T 4gc0_A 128 EFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY 201 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHH
Confidence 89999999999999999999999999999888 9999999999999999988877665432 235676
Q ss_pred HHHHHHHHHHHHHHHHHhcC--cceeecCCCCCchhHHHHHHHHHHhhhcccCCCCCCCccccchhh--hhccCcccccc
Q 035554 222 GFWICAGCDILAFSSLLSGT--LRYRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVRE--YEANGTRRILH 297 (562)
Q Consensus 222 ~f~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 297 (562)
.+.+..+..++..+..+... |++...+.+.++. .+.+.....+.... ....+..+.. ...........
T Consensus 202 ~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a---~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 273 (491)
T 4gc0_A 202 MFASECIPALLFLMLLYTVPESPRWLMSRGKQEQA---EGILRKIMGNTLAT-----QAVQEIKHSLDHGRKTGGRLLMF 273 (491)
T ss_dssp HHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHH---HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTTHHHHS
T ss_pred HhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHH---HHhHHHhcCCchhH-----HHHHHHHHHHHhhhhhhhHHHHh
Confidence 77666655544443332221 1221112111111 11111100000000 0000000000 00000000000
Q ss_pred cCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhh--hhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHH
Q 035554 298 TNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEE--MLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFIL 375 (562)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (562)
......+.... ....+... ....|...... +.... ............+..++...
T Consensus 274 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~ 330 (491)
T 4gc0_A 274 GVGVIVIGVML--------------------SIFQQFVGINVVLYYAPEVFK-TLGAS--TDIALLQTIIVGVINLTFTV 330 (491)
T ss_dssp CCTHHHHHHHH--------------------HHHHHHTCHHHHHHHHHHHHH-HSSCC--HHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHH--------------------HHHHHHhhhhHHHhcchHHHH-hcCCC--ccchhhHHHHHHHHHHHHHH
Confidence 00000000000 00000000 11111111110 00000 00011111111112222222
Q ss_pred HHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHH-
Q 035554 376 LYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEA- 454 (562)
Q Consensus 376 l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~- 454 (562)
+...+.+|+++ | ..+..+....+++++..+..... ..+.+..+...+++..+..
T Consensus 331 ----~~~~l~dr~Gr-r-------~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 385 (491)
T 4gc0_A 331 ----LAIMTVDKFGR-K-------PLQIIGALGMAIGMFSLGTAFYT-------------QAPGIVALLSMLFYVAAFAM 385 (491)
T ss_dssp ----HHHHHHHHHCS-H-------HHHHHHHHHHHHHHHHHHHHHHT-------------TCCHHHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHhhcC-c-------chhccchHHHHHHHHHHHHHHhc-------------ccchHHHHHHHHHHHHHHHh
Confidence 22234456654 1 23455666666666555444221 1122222333333333333
Q ss_pred hhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 035554 455 FVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMN 534 (562)
Q Consensus 455 ~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~ 534 (562)
...|..+.+..|..|.+.|++++|+.+..+.+++++++.+.+.+.... |. ....+....|++++++++++
T Consensus 386 ~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-------~~---~~~~~~~~~~~i~~~~~~~~ 455 (491)
T 4gc0_A 386 SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-------WL---VAHFHNGFSYWIYGCMGVLA 455 (491)
T ss_dssp TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-------HH---HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---HhhhhhhHHHHHHHHHHHHH
Confidence 344777899999999999999999999999999999988776553311 00 00011234678889999999
Q ss_pred HHHHHHHhhcccccchhhhhh
Q 035554 535 LGVFVVCARRYKSISLQKQEG 555 (562)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~ 555 (562)
.++.+++.||+|+|++||.|+
T Consensus 456 ~i~~~~~~PETkg~tLeei~~ 476 (491)
T 4gc0_A 456 ALFMWKFVPETKGKTLEELEA 476 (491)
T ss_dssp HHHHHHHCCCCTTCCHHHHGG
T ss_pred HHHHHheecCCCCCCHHHHHH
Confidence 999999999999999998663
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.87 E-value=8.6e-22 Score=202.91 Aligned_cols=167 Identities=11% Similarity=0.081 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHH
Q 035554 38 TLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLL 117 (562)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~ 117 (562)
+.+....++..+......+.++.+ .+++|.+..+.+++.+.+.++..++.++.|+++|| +||||++..+.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHH
Confidence 455666677777777777777664 56799999999999999999999999999999999 7999999999999999998
Q ss_pred HHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHH
Q 035554 118 GLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYI 197 (562)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 197 (562)
++.++. +.+.++++|++.|++.+...+...+++.|.+|+++ |++..++++.
T Consensus 81 ~~~~~~-----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 131 (375)
T 2gfp_A 81 VAVTTS-----------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNM 131 (375)
T ss_dssp HHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHH
T ss_pred HHHHhc-----------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHH
Confidence 888762 37789999999999999999999999999999888 9999999999
Q ss_pred HHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHH
Q 035554 198 ALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFS 235 (562)
Q Consensus 198 ~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~ 235 (562)
..++|..++|.+++++.+..+|+..|++.++..++..+
T Consensus 132 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 132 GILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888999999987776655444
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.84 E-value=8.9e-21 Score=198.74 Aligned_cols=395 Identities=10% Similarity=0.007 Sum_probs=218.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|..+.+....++..+++..+.++++.|+++++|+|..+.|++.+.+.++..+++++.|+++|| +||||++.++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHH
Confidence 677777777777778888888999999999999999999999999999999999999999999 7999999988876654
Q ss_pred HHHHH---HhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 115 GLLGL---SFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 115 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
+...+ .+. +. ....++.++.+.+++.+...+...+...+..++.. +.++..
T Consensus 86 ~~~~~~~~~~~---~~-------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~ 139 (417)
T 2cfq_A 86 MFAPFFIFIFG---PL-------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNFE 139 (417)
T ss_dssp CHHHHHHHTHH---HH-------------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHTCC
T ss_pred HHHHHHHHHHH---HH-------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcccc
Confidence 32111 111 00 00012334444444444443333444433332111 115666
Q ss_pred HHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhccc
Q 035554 192 YSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLE 271 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (562)
++..+...++|..++|.+++++.+ .+|+..|++.++..++..+..+...++. ++..+.. +. ..
T Consensus 140 ~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------------~~-~~ 202 (417)
T 2cfq_A 140 FGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDA---PSSATVA------------NA-VG 202 (417)
T ss_dssp HHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCC---SCSSCSS------------SS-SS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccc---ccccccc------------cc-cc
Confidence 777777789999999999999876 5899999877665433333222221110 0000000 00 00
Q ss_pred CCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCC
Q 035554 272 MPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTG 351 (562)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 351 (562)
. ..... ... +... ..+++. +.......... ........++.+.|+.+..+.+ .
T Consensus 203 -~-~~~~~-~~~-------~~~~-~~~~~~-~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~-~ 255 (417)
T 2cfq_A 203 -A-NHSAF-SLK-------LALE-LFRQPK-LWFLSLYVIGV--------------SCTYDVFDQQFANFFTSFFATG-E 255 (417)
T ss_dssp -S-CCCCC-CHH-------HHHH-HTTCHH-HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHTSSSH-H
T ss_pred -c-ccccc-cHH-------HHHH-HhcCCc-hhhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhcc-C
Confidence 0 00000 000 0000 000100 00000000000 0000011123344443221100 0
Q ss_pred CcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 035554 352 VSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGG 431 (562)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~ 431 (562)
.. ....+.....+.+...+...+.. .+.+|+++ .+.+..+.++.+++.+...+.
T Consensus 256 ~~--~~~~g~~~~~~~~~~~~~~~~~g----~l~dr~g~--------~~~l~~~~~~~~~~~~~~~~~------------ 309 (417)
T 2cfq_A 256 QG--TRVFGYVTTMGELLNASIMFFAP----LIINRIGG--------KNALLLAGTIMSVRIIGSSFA------------ 309 (417)
T ss_dssp HH--THHHHHHHHHHHHHHHHHHHHHH----HHHHHHCH--------HHHHHHHHHHHHHHHHHHTTC------------
T ss_pred CC--hhHHHHHHHHHHHHHHHHHHHHH----HHHHHhcH--------HHHHHHHHHHHHHHHHHHHHh------------
Confidence 00 00001122222222222333333 34445543 224455666555554443221
Q ss_pred CCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHH-HHHHHHHHHHHHHHHHHHhHhhhhcCCCCCC
Q 035554 432 EETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIAL-SMSSTAIGTYVCSMILSVVMVLTTKNGKPGW 510 (562)
Q Consensus 432 ~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl-~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w 510 (562)
.+.+.++...++.+++.....+..+.+..|..|++.||++.++ ++...++|+.+++.+.+.+.+.
T Consensus 310 -----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~--------- 375 (417)
T 2cfq_A 310 -----TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES--------- 375 (417)
T ss_dssp -----CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH---------
T ss_pred -----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh---------
Confidence 2344555566677777777777788999999999999999998 5888899999999998866541
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 035554 511 VPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARRYKS 547 (562)
Q Consensus 511 ~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 547 (562)
.++...|.+.+++++++.+..++..++.++
T Consensus 376 -------~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 376 -------IGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp -------SHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred -------cCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 134567788888888777776655554333
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.50 E-value=9.8e-14 Score=145.76 Aligned_cols=179 Identities=14% Similarity=0.098 Sum_probs=152.9
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcc--cchHHHHHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYL--GRYLTCVTFQAF 111 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~--Grk~~i~~~~~~ 111 (562)
.|.++.+.+..++..+.++++..+++.|+++.+|++..+.+.+.+...++..++.++.|+++|| + |||+.+.++..+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT 329 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHH
Confidence 3678888888999999999999999999999899999999999999999999999999999999 8 999999888776
Q ss_pred HH-HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 112 SI-IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 112 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
.. ++.+++.+. +. .+.+.+.+..++.|++.+...+...++..|.+|+++ |++
T Consensus 330 ~~~~~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~ 382 (451)
T 1pw4_A 330 LVTIATIVYWMN---PA------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGT 382 (451)
T ss_dssp HHHHHHHHTTSC---CT------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHH
T ss_pred HHHHHHHHHHHh---cc------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhh
Confidence 66 555554433 11 135667777788899888888888999999999888 999
Q ss_pred hHHHHHHHHhH-HHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 191 FYSYFYIALNL-GCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 191 ~~~~~~~~~~l-g~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
++++++...++ |..++|.+.+++.+..||+..|++.+++.+++.++.+..
T Consensus 383 ~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 383 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999998899999998888777766655443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.41 E-value=2.5e-12 Score=134.45 Aligned_cols=169 Identities=14% Similarity=0.093 Sum_probs=137.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLF-AKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y-~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
|.++...+..++.....+++..+++.| +++.+|++..+++...+.+.++..++.+++|+++|| +|||+++..+.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHH
Confidence 567778888888888899999999999 888889999999999999999999999999999999 799999999998888
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.+++.+. + +.+ ..+..++.+++.+...|...++..|.+|++ ++.+.+
T Consensus 337 ~~~~~~~~~---~--------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 385 (438)
T 3o7q_A 337 ALCLISAFA---G--------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSS 385 (438)
T ss_dssp HHHHHHHHC---C--------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHH
T ss_pred HHHHHHHHc---C--------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhh
Confidence 887776664 2 122 344457788999999999999989988732 344555
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHH
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGY-WVLGFWICAGCDILAFSS 236 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~-~~~~f~i~~~~~~~~~~~ 236 (562)
+.. ...+|+.++|.+.|++.+..| ++..|++.+++.++..+.
T Consensus 386 ~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 386 FIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 544 567999999999999998888 999998876665554443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.37 E-value=2.7e-12 Score=134.09 Aligned_cols=175 Identities=9% Similarity=-0.036 Sum_probs=130.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCC---ChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQ---TNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~---s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
|..+...+..++....++....++|.|+++.++. +....+...+...++..++.++.|+++|| +|||+++..+.++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~ 298 (417)
T 2cfq_A 220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHH
Confidence 4555555554555556666667788898876653 23445677777777888899999999999 7999999988888
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
.+++.+++.+. + +.+.+++..++.+++.+...+....+..|.+|++. |+++
T Consensus 299 ~~~~~~~~~~~---~--------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~ 349 (417)
T 2cfq_A 299 MSVRIIGSSFA---T--------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATI 349 (417)
T ss_dssp HHHHHHHHTTC---C--------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHH
T ss_pred HHHHHHHHHHh---c--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHH
Confidence 77776655443 1 24555666666677766666777889999998877 8898
Q ss_pred HHH-HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 035554 192 YSY-FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 192 ~~~-~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
.++ ++...++|+.++|.++|++.+..|+...|.+.+++.+++.++.+.
T Consensus 350 ~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 350 YLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 888 577888999999999999988788888998877777666665444
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.29 E-value=2.1e-11 Score=129.69 Aligned_cols=185 Identities=12% Similarity=-0.024 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHH-----HHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCV-----TFQA 110 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~-----~~~~ 110 (562)
..+.+.+..++....+......++.|.++.++.+..+.+.+.....++..++.++.|+++|| +|||+... .+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHH
Confidence 45566666677778888888899999999889887888888899999999999999999999 79987654 6666
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
+..++.+++.+...... +....+.+.+.++.++.|++.+...|...++..|.+|++. |++
T Consensus 363 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~ 422 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYG--------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQ 422 (491)
T ss_dssp HHHHHHTTTHHHHHHCC--------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSS
T ss_pred HHHHHHHHHHHHHHhcC--------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHH
Confidence 66666665555321000 0111245667778888999999989999999999999998 999
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCc
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTL 242 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~ 242 (562)
+.++++...++|..++|.+.+++.+ .++...|.+.+++.+++.++.+...+
T Consensus 423 ~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 423 MMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp STHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998876 46777787777666666555554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.02 E-value=3.2e-09 Score=112.61 Aligned_cols=182 Identities=13% Similarity=0.013 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIG 115 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~ 115 (562)
..........+..+..+........++.+..+.+............+...++.++++++.|| +|||+.++.+.....++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIG 355 (491)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHH
Confidence 33333333344443333333344455566778888887777777888899999999999999 79999999998888877
Q ss_pred HHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHH
Q 035554 116 LLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYF 195 (562)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 195 (562)
.+.+........ ........+.....+++. ...|....+.+|.+|++. |+++.++.
T Consensus 356 ~~~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~------R~~~~g~~ 411 (491)
T 4gc0_A 356 MFSLGTAFYTQA-----------------PGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI------RGKALAIA 411 (491)
T ss_dssp HHHHHHHHHTTC-----------------CHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT------HHHHHHHH
T ss_pred HHHHHHHHhccc-----------------chHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH------HHHHHHHH
Confidence 766654421111 111112222222223333 335677889999999999 99999999
Q ss_pred HHHHhHHHHHHhhhhhhcccc------cchhHHHHHHHHHHHHHHHHHHhcCc
Q 035554 196 YIALNLGCLFSETVLVYAENM------GYWVLGFWICAGCDILAFSSLLSGTL 242 (562)
Q Consensus 196 ~~~~~lg~~~~~~~~~~l~~~------~~~~~~f~i~~~~~~~~~~~~~~~~~ 242 (562)
+...++|+.+++.+.+.+.+. .++...|++.+++.+++.+..++..|
T Consensus 412 ~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~P 464 (491)
T 4gc0_A 412 VAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 464 (491)
T ss_dssp HHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheec
Confidence 999999999998887766542 24455677766666666555444433
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.98 E-value=8.2e-11 Score=120.47 Aligned_cols=165 Identities=13% Similarity=-0.005 Sum_probs=128.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH-HH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF-SI 113 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~-~~ 113 (562)
|.++...+..++...+.+++..++|.|+++++|.+..+.+.+.+...++..++.++.|+++|| +|++ +..+..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH-HHHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHH
Confidence 567788888888889999999999999999899999999999999999999999999999999 6872 2333322 22
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
.+..+...... + ..+.+.+++..++.+++.+...+...++..|.+| ++ |+++.+
T Consensus 276 ~~~~~~~~~~~-~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g 329 (375)
T 2gfp_A 276 AGLLMWIPDWF-G------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGA 329 (375)
T ss_dssp TSSSSSHHHHH-H------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHH
T ss_pred HHHHHHHHhhh-c------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHH
Confidence 22221111100 0 0135556677788899999999999999999887 55 899999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHH
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAG 228 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~ 228 (562)
+++...++|..++|.+.+.+.+..+|...+++..+
T Consensus 330 ~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 330 LVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 99999999999999999999887778877776443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.26 E-value=1.2e-06 Score=93.65 Aligned_cols=150 Identities=14% Similarity=0.059 Sum_probs=95.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHh----hhcccc----hHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCC
Q 035554 72 EASNTFSRWMGSLYLSSLMGAFLS----DSYLGR----YLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPH 143 (562)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~G~la----Dr~~Gr----k~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (562)
..+.+.....++..+..++.|++. || .|+ ++.+.++.++.+++.+++.+..... +..
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------------~~~ 400 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIER-MGVKLTALRKMGAGIAITGLSWIVVGTIQLMM--------------DGG 400 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTT--------------TTT
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh--------------cCC
Confidence 345544444555666666666664 45 343 2456677777777766655431000 000
Q ss_pred CCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhccccc--ch--
Q 035554 144 SPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMG--YW-- 219 (562)
Q Consensus 144 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~--~~-- 219 (562)
...+.+.++++.++.|++.+...+...++..|.+|++. |+++.++++...++|..++|.+.+.+.+.. +|
T Consensus 401 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~ 474 (524)
T 2xut_A 401 SALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIV 474 (524)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 11245667778888999999999999999999999988 999999999999999999999999987632 23
Q ss_pred -------hHHHHHHHHHHHHHHHHHHhcCc
Q 035554 220 -------VLGFWICAGCDILAFSSLLSGTL 242 (562)
Q Consensus 220 -------~~~f~i~~~~~~~~~~~~~~~~~ 242 (562)
+..|++.+++.+++.++.+...+
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 475 QTGMSVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 23366666655555555444433
Done!