Query 035555
Match_columns 767
No_of_seqs 411 out of 3700
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 04:01:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035555.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035555hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.9E-74 4.2E-79 657.3 34.1 550 1-574 71-677 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.6E-60 3.5E-65 574.6 45.0 626 52-746 134-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.3E-41 2.8E-46 352.9 12.7 267 102-375 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.8 4.2E-20 9E-25 224.3 13.3 284 444-741 139-439 (968)
5 PLN00113 leucine-rich repeat r 99.8 1.5E-19 3.3E-24 219.5 14.0 287 442-742 161-464 (968)
6 PLN03210 Resistant to P. syrin 99.8 1.2E-18 2.5E-23 211.7 17.3 244 466-746 611-885 (1153)
7 KOG0444 Cytoskeletal regulator 99.8 1.1E-20 2.4E-25 195.8 -3.8 270 457-746 94-378 (1255)
8 KOG4194 Membrane glycoprotein 99.7 2.3E-19 5.1E-24 185.0 1.4 271 443-741 147-427 (873)
9 KOG0444 Cytoskeletal regulator 99.7 9.2E-19 2E-23 181.7 -2.0 263 443-736 101-393 (1255)
10 KOG0472 Leucine-rich repeat pr 99.6 3.4E-18 7.4E-23 169.1 -6.3 193 444-650 113-308 (565)
11 KOG4194 Membrane glycoprotein 99.6 5.8E-17 1.2E-21 167.6 2.3 274 442-740 99-402 (873)
12 KOG0472 Leucine-rich repeat pr 99.6 2.7E-18 5.8E-23 169.8 -9.1 243 442-742 65-309 (565)
13 KOG0618 Serine/threonine phosp 99.5 2E-15 4.3E-20 164.8 -0.1 147 593-749 241-470 (1081)
14 PRK15387 E3 ubiquitin-protein 99.5 4.4E-13 9.6E-18 151.4 13.1 232 446-741 223-456 (788)
15 KOG0617 Ras suppressor protein 99.4 2.9E-15 6.3E-20 131.4 -4.5 163 461-658 28-191 (264)
16 PRK15370 E3 ubiquitin-protein 99.4 3.1E-13 6.8E-18 153.7 9.2 235 454-742 189-427 (754)
17 KOG0618 Serine/threonine phosp 99.4 7.4E-15 1.6E-19 160.4 -5.6 227 465-718 240-489 (1081)
18 PRK04841 transcriptional regul 99.4 5.9E-11 1.3E-15 143.8 24.1 292 92-425 9-332 (903)
19 PRK00411 cdc6 cell division co 99.3 8.9E-10 1.9E-14 119.7 26.7 306 91-414 24-374 (394)
20 KOG4658 Apoptotic ATPase [Sign 99.3 2.6E-12 5.6E-17 148.5 5.9 269 442-723 568-847 (889)
21 KOG4237 Extracellular matrix p 99.3 3.9E-13 8.4E-18 133.6 -1.0 84 635-736 270-353 (498)
22 PRK00080 ruvB Holliday junctio 99.3 2E-10 4.3E-15 120.7 18.5 266 95-401 23-311 (328)
23 TIGR00635 ruvB Holliday juncti 99.3 2.2E-10 4.8E-15 119.6 18.4 262 97-400 4-289 (305)
24 PRK15370 E3 ubiquitin-protein 99.2 1.5E-11 3.3E-16 140.0 9.4 225 446-716 200-426 (754)
25 PRK15387 E3 ubiquitin-protein 99.2 4.6E-11 9.9E-16 135.3 10.8 223 435-717 232-457 (788)
26 TIGR03015 pepcterm_ATPase puta 99.2 9.2E-10 2E-14 112.9 19.5 174 124-299 43-242 (269)
27 KOG0617 Ras suppressor protein 99.2 4.7E-13 1E-17 117.7 -4.7 167 454-655 44-215 (264)
28 TIGR02928 orc1/cdc6 family rep 99.1 2.9E-08 6.2E-13 106.7 27.1 294 94-401 12-351 (365)
29 PF01637 Arch_ATPase: Archaeal 99.1 9.2E-10 2E-14 110.4 13.5 186 99-294 1-233 (234)
30 cd00116 LRR_RI Leucine-rich re 99.1 7.1E-12 1.5E-16 132.3 -2.6 66 459-525 16-92 (319)
31 cd00116 LRR_RI Leucine-rich re 99.0 2.9E-11 6.3E-16 127.6 -1.8 257 471-741 3-289 (319)
32 COG3899 Predicted ATPase [Gene 99.0 2.1E-08 4.5E-13 116.9 20.4 304 99-424 2-385 (849)
33 COG2909 MalT ATP-dependent tra 99.0 4.2E-08 9E-13 108.2 21.0 296 90-427 12-340 (894)
34 KOG4237 Extracellular matrix p 99.0 2.8E-11 6E-16 120.6 -3.9 102 449-552 73-178 (498)
35 COG2256 MGS1 ATPase related to 98.9 1.1E-08 2.3E-13 103.5 10.9 154 123-292 47-209 (436)
36 PF05729 NACHT: NACHT domain 98.9 1.8E-08 3.9E-13 95.0 11.1 133 125-262 1-163 (166)
37 PRK13342 recombination factor 98.8 5.2E-08 1.1E-12 105.6 15.9 178 96-296 11-197 (413)
38 PTZ00112 origin recognition co 98.8 1E-06 2.2E-11 98.3 23.7 203 95-299 753-986 (1164)
39 KOG3207 Beta-tubulin folding c 98.8 1.6E-09 3.6E-14 109.7 0.7 213 463-716 118-337 (505)
40 PF05496 RuvB_N: Holliday junc 98.8 1.2E-07 2.7E-12 89.7 12.8 183 95-299 22-225 (233)
41 KOG4341 F-box protein containi 98.7 6.2E-10 1.3E-14 112.1 -3.4 297 446-767 139-457 (483)
42 PRK07003 DNA polymerase III su 98.7 1.4E-06 2.9E-11 96.9 20.2 193 96-297 15-223 (830)
43 PRK06893 DNA replication initi 98.7 3.8E-07 8.2E-12 90.3 14.4 151 124-297 39-205 (229)
44 PTZ00202 tuzin; Provisional 98.6 8.8E-06 1.9E-10 84.3 22.4 168 89-262 254-434 (550)
45 PF14580 LRR_9: Leucine-rich r 98.6 1.7E-08 3.7E-13 93.7 2.2 129 588-736 14-147 (175)
46 PRK04195 replication factor C 98.6 6E-06 1.3E-10 91.5 21.4 245 93-374 10-271 (482)
47 PLN03025 replication factor C 98.6 7.8E-07 1.7E-11 93.1 13.5 177 95-291 11-196 (319)
48 KOG0532 Leucine-rich repeat (L 98.6 4.9E-09 1.1E-13 109.6 -2.9 145 452-610 107-251 (722)
49 PRK14961 DNA polymerase III su 98.6 1.3E-06 2.8E-11 92.9 15.3 186 96-291 15-216 (363)
50 PRK13341 recombination factor 98.5 7.8E-07 1.7E-11 101.4 13.9 173 96-290 27-212 (725)
51 PRK12402 replication factor C 98.5 1.9E-06 4.1E-11 91.6 16.1 188 96-293 14-224 (337)
52 TIGR03420 DnaA_homol_Hda DnaA 98.5 1.5E-06 3.2E-11 86.6 14.2 168 102-298 22-204 (226)
53 PRK14960 DNA polymerase III su 98.5 2E-06 4.4E-11 94.5 15.7 188 96-292 14-216 (702)
54 KOG0532 Leucine-rich repeat (L 98.5 9.7E-09 2.1E-13 107.5 -2.0 183 452-649 84-270 (722)
55 COG4886 Leucine-rich repeat (L 98.5 9.2E-08 2E-12 104.0 4.3 171 445-651 116-289 (394)
56 PRK08691 DNA polymerase III su 98.4 2.9E-06 6.4E-11 94.2 14.5 195 96-299 15-225 (709)
57 PRK14963 DNA polymerase III su 98.4 1.6E-06 3.4E-11 95.2 12.4 194 97-299 14-222 (504)
58 PRK14949 DNA polymerase III su 98.4 1.9E-06 4.1E-11 97.7 13.1 191 96-295 15-221 (944)
59 PRK12323 DNA polymerase III su 98.4 2.7E-06 5.9E-11 93.3 14.0 189 96-293 15-223 (700)
60 PRK14956 DNA polymerase III su 98.4 1.7E-06 3.8E-11 92.4 11.9 187 96-291 17-218 (484)
61 PF13191 AAA_16: AAA ATPase do 98.4 5.1E-07 1.1E-11 86.7 7.1 47 98-147 1-47 (185)
62 PRK09087 hypothetical protein; 98.4 1.1E-05 2.4E-10 79.3 16.6 141 124-294 44-194 (226)
63 PRK06645 DNA polymerase III su 98.4 1.8E-06 3.9E-11 94.3 11.6 188 96-292 20-226 (507)
64 PRK00440 rfc replication facto 98.4 6.2E-06 1.3E-10 86.9 15.4 178 95-292 15-200 (319)
65 PRK05564 DNA polymerase III su 98.4 5.6E-06 1.2E-10 86.4 14.8 175 97-293 4-188 (313)
66 COG2255 RuvB Holliday junction 98.4 2.8E-05 6.1E-10 75.4 17.8 269 96-403 25-314 (332)
67 PRK07994 DNA polymerase III su 98.4 5.4E-06 1.2E-10 92.6 15.1 188 96-292 15-217 (647)
68 COG4886 Leucine-rich repeat (L 98.4 2.5E-07 5.5E-12 100.6 4.7 178 460-686 110-288 (394)
69 cd00009 AAA The AAA+ (ATPases 98.4 2.3E-06 5E-11 78.6 10.4 121 100-233 1-131 (151)
70 PRK14957 DNA polymerase III su 98.4 1E-05 2.2E-10 89.1 16.7 194 97-299 16-225 (546)
71 PF14580 LRR_9: Leucine-rich r 98.4 2E-07 4.4E-12 86.6 2.9 100 446-550 20-125 (175)
72 PF13173 AAA_14: AAA domain 98.4 2.1E-06 4.5E-11 76.6 9.3 114 125-254 3-127 (128)
73 PRK05896 DNA polymerase III su 98.4 8.1E-06 1.7E-10 89.8 15.4 194 96-298 15-224 (605)
74 PRK07471 DNA polymerase III su 98.3 1.7E-05 3.8E-10 83.5 17.3 187 95-295 17-238 (365)
75 PRK09112 DNA polymerase III su 98.3 1.8E-05 3.8E-10 83.0 17.1 189 95-295 21-240 (351)
76 KOG4341 F-box protein containi 98.3 3.3E-08 7.1E-13 100.0 -3.1 141 565-719 294-440 (483)
77 KOG1909 Ran GTPase-activating 98.3 1.8E-08 3.8E-13 99.7 -4.9 65 586-650 178-252 (382)
78 KOG1259 Nischarin, modulator o 98.3 1E-07 2.2E-12 92.1 0.3 60 463-523 179-246 (490)
79 COG1474 CDC6 Cdc6-related prot 98.3 9.6E-05 2.1E-09 77.8 22.5 195 96-294 16-237 (366)
80 KOG1259 Nischarin, modulator o 98.3 5.8E-08 1.2E-12 93.7 -1.7 61 589-650 325-385 (490)
81 PRK14962 DNA polymerase III su 98.3 8.7E-06 1.9E-10 88.7 14.7 194 96-299 13-223 (472)
82 TIGR01242 26Sp45 26S proteasom 98.3 6.9E-06 1.5E-10 87.7 13.8 180 96-289 121-328 (364)
83 PF13401 AAA_22: AAA domain; P 98.3 3.1E-06 6.7E-11 76.1 9.5 107 123-231 3-125 (131)
84 KOG3207 Beta-tubulin folding c 98.3 9.7E-08 2.1E-12 97.2 -0.5 206 486-736 117-333 (505)
85 KOG0989 Replication factor C, 98.3 7.7E-06 1.7E-10 80.1 12.5 191 87-289 26-224 (346)
86 TIGR02397 dnaX_nterm DNA polym 98.3 2.4E-05 5.2E-10 83.8 17.7 191 96-295 13-218 (355)
87 PRK14951 DNA polymerase III su 98.3 1.4E-05 2.9E-10 89.3 15.9 188 96-292 15-222 (618)
88 TIGR02903 spore_lon_C ATP-depe 98.3 1E-05 2.2E-10 91.5 15.2 194 95-298 152-398 (615)
89 PRK08903 DnaA regulatory inact 98.3 2.5E-05 5.4E-10 77.6 15.9 153 123-299 41-203 (227)
90 PRK14955 DNA polymerase III su 98.3 1.4E-05 3.1E-10 86.0 15.1 191 96-296 15-230 (397)
91 COG3903 Predicted ATPase [Gene 98.3 2.5E-06 5.3E-11 87.4 8.4 258 123-399 13-291 (414)
92 PRK14964 DNA polymerase III su 98.3 2.3E-05 5.1E-10 84.9 16.4 187 96-291 12-213 (491)
93 PRK08727 hypothetical protein; 98.3 2.5E-05 5.4E-10 77.6 15.5 145 125-292 42-201 (233)
94 PRK07940 DNA polymerase III su 98.2 2E-05 4.3E-10 83.8 14.7 190 97-295 5-213 (394)
95 KOG2120 SCF ubiquitin ligase, 98.2 7.1E-08 1.5E-12 93.1 -3.4 37 614-650 311-349 (419)
96 PF00308 Bac_DnaA: Bacterial d 98.2 2.9E-05 6.4E-10 76.0 14.7 178 99-293 11-206 (219)
97 PRK14950 DNA polymerase III su 98.2 3.4E-05 7.3E-10 87.3 16.2 190 96-294 15-220 (585)
98 KOG2028 ATPase related to the 98.2 1.1E-05 2.4E-10 80.4 10.0 176 97-290 138-331 (554)
99 PRK14954 DNA polymerase III su 98.2 4.3E-05 9.3E-10 85.7 15.9 193 96-297 15-231 (620)
100 PRK14970 DNA polymerase III su 98.2 5.9E-05 1.3E-09 80.9 16.6 184 96-297 16-212 (367)
101 PRK14958 DNA polymerase III su 98.1 2.7E-05 5.8E-10 85.9 13.9 188 96-292 15-217 (509)
102 TIGR00678 holB DNA polymerase 98.1 5.2E-05 1.1E-09 72.8 14.3 159 123-291 13-187 (188)
103 PRK09111 DNA polymerase III su 98.1 5.3E-05 1.1E-09 84.8 16.0 189 96-293 23-231 (598)
104 PRK14087 dnaA chromosomal repl 98.1 6.2E-05 1.3E-09 82.0 16.1 164 124-297 141-321 (450)
105 PRK03992 proteasome-activating 98.1 2.1E-05 4.5E-10 84.4 11.7 179 97-289 131-337 (389)
106 KOG2120 SCF ubiquitin ligase, 98.1 8.1E-08 1.8E-12 92.8 -6.0 86 514-605 185-272 (419)
107 PHA02544 44 clamp loader, smal 98.1 5.3E-05 1.1E-09 79.6 14.5 148 92-260 16-171 (316)
108 PRK14952 DNA polymerase III su 98.1 0.00011 2.3E-09 81.9 17.3 196 96-300 12-225 (584)
109 PRK14959 DNA polymerase III su 98.1 5.4E-05 1.2E-09 83.9 14.9 191 96-299 15-225 (624)
110 PRK06620 hypothetical protein; 98.1 0.00012 2.6E-09 71.3 15.8 135 125-292 45-186 (214)
111 PRK08451 DNA polymerase III su 98.1 8.4E-05 1.8E-09 81.4 16.2 190 96-294 13-217 (535)
112 KOG1909 Ran GTPase-activating 98.1 9.3E-07 2E-11 87.8 0.8 117 561-686 181-309 (382)
113 PRK07764 DNA polymerase III su 98.1 7.5E-05 1.6E-09 86.5 16.4 193 97-299 15-226 (824)
114 PRK08084 DNA replication initi 98.1 0.00015 3.2E-09 72.1 16.3 150 124-296 45-210 (235)
115 PRK14969 DNA polymerase III su 98.1 3.6E-05 7.8E-10 85.5 13.0 194 97-299 16-225 (527)
116 PRK06305 DNA polymerase III su 98.1 9.5E-05 2.1E-09 80.6 15.9 193 96-297 16-225 (451)
117 PRK05642 DNA replication initi 98.1 9.3E-05 2E-09 73.5 14.6 152 124-298 45-211 (234)
118 PRK07133 DNA polymerase III su 98.0 0.00012 2.6E-09 82.6 16.5 190 96-297 17-222 (725)
119 PF05673 DUF815: Protein of un 98.0 9.2E-05 2E-09 71.5 13.4 126 93-234 23-153 (249)
120 PF13855 LRR_8: Leucine rich r 98.0 5.6E-06 1.2E-10 62.8 4.1 57 466-524 1-59 (61)
121 PRK14971 DNA polymerase III su 98.0 8.6E-05 1.9E-09 83.8 15.3 191 96-295 16-223 (614)
122 PF14516 AAA_35: AAA-like doma 98.0 0.001 2.2E-08 69.7 22.3 193 95-302 9-246 (331)
123 PRK14948 DNA polymerase III su 98.0 0.00014 3E-09 82.1 16.3 188 97-293 16-220 (620)
124 TIGR02881 spore_V_K stage V sp 98.0 0.00029 6.4E-09 71.4 16.6 153 98-262 7-191 (261)
125 PRK06647 DNA polymerase III su 98.0 0.00017 3.7E-09 80.5 15.8 190 97-295 16-221 (563)
126 PRK14953 DNA polymerase III su 98.0 0.00028 6E-09 77.5 17.2 189 97-294 16-219 (486)
127 TIGR02639 ClpA ATP-dependent C 97.9 6.3E-05 1.4E-09 87.7 12.2 156 97-262 182-358 (731)
128 PLN03150 hypothetical protein; 97.9 1.5E-05 3.2E-10 91.1 6.6 90 447-536 420-512 (623)
129 CHL00095 clpC Clp protease ATP 97.9 7.5E-05 1.6E-09 88.1 12.0 155 97-260 179-352 (821)
130 CHL00181 cbbX CbbX; Provisiona 97.9 0.0013 2.8E-08 67.3 19.1 129 125-263 60-210 (287)
131 PLN03150 hypothetical protein; 97.8 3.6E-05 7.9E-10 87.9 8.3 79 467-545 419-497 (623)
132 TIGR03345 VI_ClpV1 type VI sec 97.8 4.8E-05 1E-09 89.3 9.3 156 96-261 186-362 (852)
133 KOG0991 Replication factor C, 97.8 0.00025 5.3E-09 66.7 12.0 115 87-217 17-138 (333)
134 PRK14965 DNA polymerase III su 97.8 0.00029 6.3E-09 79.4 14.8 195 96-299 15-225 (576)
135 PF13855 LRR_8: Leucine rich r 97.8 3.3E-05 7.3E-10 58.5 4.9 37 673-715 23-59 (61)
136 PRK14086 dnaA chromosomal repl 97.8 0.00026 5.7E-09 78.2 13.5 151 126-290 316-483 (617)
137 TIGR00362 DnaA chromosomal rep 97.8 0.00062 1.3E-08 74.0 16.2 155 124-292 136-307 (405)
138 PRK05563 DNA polymerase III su 97.8 0.00053 1.2E-08 76.9 15.8 187 96-291 15-216 (559)
139 PRK00149 dnaA chromosomal repl 97.8 0.00064 1.4E-08 74.8 16.1 153 124-292 148-319 (450)
140 TIGR02880 cbbX_cfxQ probable R 97.8 0.00048 1E-08 70.5 14.0 128 125-262 59-208 (284)
141 KOG0531 Protein phosphatase 1, 97.8 1E-05 2.3E-10 88.1 2.0 189 443-650 93-288 (414)
142 PRK14088 dnaA chromosomal repl 97.8 0.0009 2E-08 72.9 16.8 155 125-292 131-302 (440)
143 PF12799 LRR_4: Leucine Rich r 97.7 3.7E-05 8E-10 53.4 3.9 40 466-507 1-40 (44)
144 PF05621 TniB: Bacterial TniB 97.7 0.00048 1E-08 68.9 13.2 190 97-290 34-256 (302)
145 PRK15386 type III secretion pr 97.7 9.3E-05 2E-09 77.5 8.3 65 463-533 49-113 (426)
146 PRK11034 clpA ATP-dependent Cl 97.7 0.0001 2.2E-09 84.8 9.2 153 97-261 186-361 (758)
147 TIGR00602 rad24 checkpoint pro 97.7 0.00057 1.2E-08 76.7 14.6 60 87-147 74-133 (637)
148 KOG2543 Origin recognition com 97.7 0.0033 7.2E-08 64.0 18.1 164 95-261 4-192 (438)
149 PRK12422 chromosomal replicati 97.7 0.0007 1.5E-08 73.6 14.6 150 124-287 141-305 (445)
150 PRK07399 DNA polymerase III su 97.7 0.001 2.2E-08 68.9 15.0 184 97-294 4-220 (314)
151 PTZ00454 26S protease regulato 97.7 0.00054 1.2E-08 73.2 13.1 156 98-262 146-329 (398)
152 KOG0531 Protein phosphatase 1, 97.7 9.6E-06 2.1E-10 88.4 -0.1 89 455-548 84-172 (414)
153 COG0593 DnaA ATPase involved i 97.7 0.0028 6.1E-08 66.7 17.9 131 123-266 112-261 (408)
154 PF00004 AAA: ATPase family as 97.6 8.5E-05 1.9E-09 66.7 5.7 94 127-231 1-111 (132)
155 PRK10536 hypothetical protein; 97.6 0.00088 1.9E-08 65.7 12.9 42 97-146 55-96 (262)
156 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00035 7.7E-09 82.8 11.9 157 97-261 173-348 (852)
157 PRK05707 DNA polymerase III su 97.6 0.0013 2.9E-08 68.4 14.6 161 123-295 21-203 (328)
158 KOG2982 Uncharacterized conser 97.6 1.1E-05 2.4E-10 78.3 -0.9 84 637-736 197-286 (418)
159 PRK08769 DNA polymerase III su 97.6 0.0023 5E-08 66.0 15.5 173 104-295 11-208 (319)
160 PRK08116 hypothetical protein; 97.5 0.0005 1.1E-08 69.6 10.1 100 125-231 115-220 (268)
161 COG1223 Predicted ATPase (AAA+ 97.5 0.0023 4.9E-08 61.5 13.6 158 95-262 119-297 (368)
162 PRK11331 5-methylcytosine-spec 97.5 0.00037 8.1E-09 74.0 9.4 43 97-147 175-217 (459)
163 PTZ00361 26 proteosome regulat 97.5 0.00034 7.4E-09 75.2 9.0 156 98-262 184-367 (438)
164 CHL00176 ftsH cell division pr 97.5 0.0016 3.4E-08 73.8 14.7 177 96-288 182-387 (638)
165 TIGR01241 FtsH_fam ATP-depende 97.5 0.0015 3.2E-08 72.9 14.2 181 95-289 53-260 (495)
166 PF12799 LRR_4: Leucine Rich r 97.5 0.00012 2.5E-09 50.9 3.3 40 490-531 1-40 (44)
167 PRK15386 type III secretion pr 97.5 0.00016 3.4E-09 75.8 5.6 67 587-657 46-112 (426)
168 PRK10865 protein disaggregatio 97.5 0.00093 2E-08 78.9 12.7 45 97-147 178-222 (857)
169 COG0542 clpA ATP-binding subun 97.4 0.00056 1.2E-08 77.3 9.9 123 96-219 490-620 (786)
170 PRK08058 DNA polymerase III su 97.4 0.0023 5.1E-08 67.0 13.8 159 98-261 6-181 (329)
171 cd01128 rho_factor Transcripti 97.4 0.00019 4E-09 71.4 5.0 79 123-202 15-113 (249)
172 COG1373 Predicted ATPase (AAA+ 97.4 0.0029 6.2E-08 68.0 14.1 163 102-296 22-193 (398)
173 PF10443 RNA12: RNA12 protein; 97.4 0.0069 1.5E-07 63.6 16.0 113 193-306 149-289 (431)
174 PF13177 DNA_pol3_delta2: DNA 97.3 0.003 6.4E-08 58.7 12.0 144 101-250 1-162 (162)
175 PF01695 IstB_IS21: IstB-like 97.3 0.00032 7E-09 66.2 5.6 97 124-231 47-149 (178)
176 PRK13531 regulatory ATPase Rav 97.3 0.00051 1.1E-08 73.6 7.6 146 97-261 20-193 (498)
177 COG2607 Predicted ATPase (AAA+ 97.3 0.00092 2E-08 63.5 8.1 122 94-231 57-182 (287)
178 PRK06871 DNA polymerase III su 97.3 0.0062 1.3E-07 63.0 14.9 171 106-291 11-199 (325)
179 COG3267 ExeA Type II secretory 97.3 0.0089 1.9E-07 57.8 14.6 175 123-298 50-248 (269)
180 PRK06526 transposase; Provisio 97.3 0.00086 1.9E-08 67.1 8.2 97 125-232 99-201 (254)
181 COG1875 NYN ribonuclease and A 97.3 0.0012 2.7E-08 66.5 9.1 121 99-230 226-386 (436)
182 TIGR02639 ClpA ATP-dependent C 97.3 0.003 6.6E-08 73.8 13.8 122 97-219 454-580 (731)
183 PHA00729 NTP-binding motif con 97.3 0.002 4.3E-08 62.2 10.1 114 123-263 16-141 (226)
184 KOG3665 ZYG-1-like serine/thre 97.2 0.0002 4.3E-09 81.7 3.7 105 466-574 122-229 (699)
185 smart00763 AAA_PrkA PrkA AAA d 97.2 0.00034 7.3E-09 72.3 4.6 50 98-147 52-101 (361)
186 TIGR03689 pup_AAA proteasome A 97.2 0.0032 7E-08 68.9 12.4 162 97-262 182-378 (512)
187 PRK12377 putative replication 97.2 0.00037 8.1E-09 69.1 4.8 98 125-231 102-205 (248)
188 TIGR03345 VI_ClpV1 type VI sec 97.2 0.0016 3.6E-08 76.6 10.6 132 97-231 566-718 (852)
189 COG2812 DnaX DNA polymerase II 97.2 0.0012 2.6E-08 71.7 8.6 185 97-290 16-215 (515)
190 PRK09376 rho transcription ter 97.2 0.00057 1.2E-08 71.0 5.9 89 108-202 158-266 (416)
191 TIGR02640 gas_vesic_GvpN gas v 97.2 0.0039 8.4E-08 63.2 11.7 35 104-146 9-43 (262)
192 PRK06090 DNA polymerase III su 97.2 0.015 3.2E-07 60.0 15.9 173 105-295 11-201 (319)
193 KOG2227 Pre-initiation complex 97.1 0.0054 1.2E-07 64.2 12.4 204 94-299 147-376 (529)
194 PF02562 PhoH: PhoH-like prote 97.1 0.00047 1E-08 65.8 4.4 120 101-232 4-156 (205)
195 PF00910 RNA_helicase: RNA hel 97.1 0.0014 3E-08 56.2 7.0 20 127-146 1-20 (107)
196 PRK08181 transposase; Validate 97.1 0.0011 2.4E-08 66.7 7.2 96 126-231 108-208 (269)
197 smart00382 AAA ATPases associa 97.1 0.0024 5.3E-08 57.7 8.6 24 125-148 3-26 (148)
198 KOG1859 Leucine-rich repeat pr 97.1 1.9E-05 4.1E-10 85.6 -6.2 107 561-686 183-290 (1096)
199 PRK08939 primosomal protein Dn 97.1 0.0024 5.3E-08 65.7 9.3 119 101-231 135-260 (306)
200 PRK07993 DNA polymerase III su 97.1 0.011 2.4E-07 61.8 14.2 170 105-292 10-201 (334)
201 KOG2228 Origin recognition com 97.0 0.0039 8.5E-08 62.4 9.9 165 96-262 23-219 (408)
202 TIGR03346 chaperone_ClpB ATP-d 97.0 0.0025 5.4E-08 75.7 10.4 120 97-219 565-694 (852)
203 PRK07952 DNA replication prote 97.0 0.003 6.5E-08 62.6 9.1 100 124-231 99-204 (244)
204 PRK08118 topology modulation p 97.0 0.0012 2.6E-08 61.7 5.9 65 126-202 3-68 (167)
205 PRK06964 DNA polymerase III su 97.0 0.011 2.3E-07 61.7 13.3 93 191-295 131-225 (342)
206 TIGR01243 CDC48 AAA family ATP 97.0 0.0044 9.6E-08 72.7 11.8 178 97-290 178-382 (733)
207 PRK10865 protein disaggregatio 97.0 0.0037 8.1E-08 73.9 11.2 122 97-219 568-697 (857)
208 PF14532 Sigma54_activ_2: Sigm 97.0 0.0015 3.3E-08 59.0 6.3 108 100-232 1-110 (138)
209 TIGR00767 rho transcription te 97.0 0.00097 2.1E-08 69.7 5.4 78 124-202 168-265 (415)
210 TIGR02902 spore_lonB ATP-depen 97.0 0.0071 1.5E-07 67.6 12.5 44 97-146 65-108 (531)
211 PRK06921 hypothetical protein; 97.0 0.0033 7.2E-08 63.5 9.0 96 124-231 117-224 (266)
212 TIGR01243 CDC48 AAA family ATP 97.0 0.01 2.2E-07 69.7 14.3 179 97-289 453-657 (733)
213 KOG0733 Nuclear AAA ATPase (VC 97.0 0.01 2.2E-07 64.0 12.7 97 97-202 190-292 (802)
214 PRK10787 DNA-binding ATP-depen 96.9 0.0022 4.9E-08 74.6 8.5 163 96-262 321-506 (784)
215 PRK09183 transposase/IS protei 96.9 0.0024 5.3E-08 64.3 7.7 97 125-231 103-205 (259)
216 COG1222 RPT1 ATP-dependent 26S 96.9 0.019 4.1E-07 58.2 13.3 186 99-299 153-371 (406)
217 COG1484 DnaC DNA replication p 96.9 0.0011 2.4E-08 66.4 4.8 77 125-210 106-185 (254)
218 KOG0741 AAA+-type ATPase [Post 96.9 0.014 3.1E-07 61.8 12.8 152 121-285 535-704 (744)
219 PF07693 KAP_NTPase: KAP famil 96.9 0.031 6.8E-07 58.9 16.1 43 102-147 1-43 (325)
220 PRK04132 replication factor C 96.9 0.01 2.3E-07 68.7 13.1 147 132-292 574-728 (846)
221 TIGR00763 lon ATP-dependent pr 96.9 0.0037 8.1E-08 73.5 9.7 51 97-147 320-370 (775)
222 CHL00095 clpC Clp protease ATP 96.8 0.0029 6.2E-08 74.9 8.4 121 97-219 509-638 (821)
223 PRK11034 clpA ATP-dependent Cl 96.8 0.0046 9.9E-08 71.5 9.7 120 97-219 458-584 (758)
224 KOG1947 Leucine rich repeat pr 96.8 0.00015 3.3E-09 81.2 -2.2 42 706-748 402-445 (482)
225 COG2884 FtsE Predicted ATPase 96.8 0.013 2.8E-07 54.0 10.3 116 124-239 28-204 (223)
226 PF13207 AAA_17: AAA domain; P 96.7 0.0011 2.3E-08 58.4 3.0 22 126-147 1-22 (121)
227 COG0542 clpA ATP-binding subun 96.7 0.0086 1.9E-07 68.0 10.6 157 97-261 170-345 (786)
228 PRK06696 uridine kinase; Valid 96.7 0.0021 4.5E-08 63.5 5.2 44 101-147 2-45 (223)
229 PF04665 Pox_A32: Poxvirus A32 96.7 0.0043 9.3E-08 60.7 7.2 23 125-147 14-36 (241)
230 KOG0734 AAA+-type ATPase conta 96.7 0.0043 9.4E-08 65.6 7.5 56 97-152 304-365 (752)
231 CHL00195 ycf46 Ycf46; Provisio 96.7 0.023 5.1E-07 62.3 13.6 157 97-263 228-406 (489)
232 PRK06835 DNA replication prote 96.7 0.0035 7.6E-08 65.1 6.9 99 125-231 184-288 (329)
233 PRK11889 flhF flagellar biosyn 96.7 0.014 2.9E-07 61.0 11.0 105 123-227 240-357 (436)
234 KOG1947 Leucine rich repeat pr 96.7 0.00026 5.7E-09 79.3 -1.8 60 465-524 187-253 (482)
235 PF00158 Sigma54_activat: Sigm 96.7 0.0051 1.1E-07 57.3 7.1 120 99-231 1-143 (168)
236 PRK08699 DNA polymerase III su 96.7 0.023 4.9E-07 59.2 12.5 71 191-261 112-184 (325)
237 COG1136 SalX ABC-type antimicr 96.6 0.017 3.7E-07 55.8 10.4 64 176-239 144-210 (226)
238 KOG4579 Leucine-rich repeat (L 96.6 0.00015 3.3E-09 62.4 -3.1 82 460-544 47-129 (177)
239 PF13671 AAA_33: AAA domain; P 96.6 0.0046 9.9E-08 56.3 6.4 22 126-147 1-22 (143)
240 PRK07261 topology modulation p 96.6 0.0021 4.4E-08 60.5 4.0 65 126-202 2-67 (171)
241 KOG3665 ZYG-1-like serine/thre 96.6 0.00082 1.8E-08 76.8 1.5 15 560-574 168-182 (699)
242 PHA02244 ATPase-like protein 96.6 0.0089 1.9E-07 62.0 8.7 99 126-231 121-230 (383)
243 KOG0744 AAA+-type ATPase [Post 96.6 0.021 4.6E-07 56.9 10.9 72 124-201 177-259 (423)
244 PTZ00494 tuzin-like protein; P 96.6 0.24 5.3E-06 52.1 18.7 169 90-262 364-544 (664)
245 PRK15455 PrkA family serine pr 96.6 0.0017 3.7E-08 70.6 3.5 49 98-146 77-125 (644)
246 COG0470 HolB ATPase involved i 96.5 0.014 3.1E-07 61.4 10.6 145 98-248 2-167 (325)
247 KOG1859 Leucine-rich repeat pr 96.5 0.0001 2.2E-09 80.3 -5.8 60 461-524 204-264 (1096)
248 KOG2004 Mitochondrial ATP-depe 96.5 0.0024 5.2E-08 70.0 4.3 52 96-147 410-461 (906)
249 PRK06762 hypothetical protein; 96.5 0.046 1E-06 51.1 12.5 24 124-147 2-25 (166)
250 COG0466 Lon ATP-dependent Lon 96.5 0.002 4.3E-08 70.9 3.4 163 96-262 322-508 (782)
251 PF00448 SRP54: SRP54-type pro 96.5 0.024 5.2E-07 54.4 10.5 24 124-147 1-24 (196)
252 KOG1969 DNA replication checkp 96.5 0.0065 1.4E-07 66.9 7.1 82 121-217 323-412 (877)
253 TIGR01817 nifA Nif-specific re 96.4 0.025 5.4E-07 63.9 11.6 128 95-231 194-340 (534)
254 PRK05800 cobU adenosylcobinami 96.4 0.0091 2E-07 55.8 6.7 75 126-201 3-85 (170)
255 KOG1514 Origin recognition com 96.3 0.11 2.4E-06 57.4 15.6 196 96-297 395-623 (767)
256 KOG2739 Leucine-rich acidic nu 96.3 0.002 4.3E-08 62.3 2.2 37 488-524 63-101 (260)
257 PRK12724 flagellar biosynthesi 96.3 0.019 4E-07 60.9 9.4 25 123-147 222-246 (432)
258 KOG2982 Uncharacterized conser 96.3 0.0017 3.7E-08 63.6 1.3 57 464-524 69-131 (418)
259 PRK05541 adenylylsulfate kinas 96.2 0.015 3.2E-07 55.1 7.4 25 123-147 6-30 (176)
260 PF13604 AAA_30: AAA domain; P 96.2 0.028 6E-07 54.1 9.1 98 125-231 19-130 (196)
261 COG1124 DppF ABC-type dipeptid 96.1 0.041 8.9E-07 53.0 9.8 22 124-145 33-54 (252)
262 COG1121 ZnuC ABC-type Mn/Zn tr 96.1 0.046 1E-06 53.8 10.4 54 178-233 143-200 (254)
263 PRK04296 thymidine kinase; Pro 96.1 0.012 2.7E-07 56.3 6.3 105 125-233 3-117 (190)
264 TIGR02974 phageshock_pspF psp 96.1 0.019 4.1E-07 60.1 8.0 45 99-147 1-45 (329)
265 PRK11608 pspF phage shock prot 96.1 0.018 3.8E-07 60.4 7.8 47 97-147 6-52 (326)
266 KOG1644 U2-associated snRNP A' 96.1 0.0064 1.4E-07 56.4 3.8 88 588-685 59-150 (233)
267 PRK05703 flhF flagellar biosyn 96.0 0.067 1.4E-06 58.0 12.3 92 124-217 221-326 (424)
268 KOG1051 Chaperone HSP104 and r 96.0 0.07 1.5E-06 61.7 12.8 127 98-232 563-710 (898)
269 PRK07667 uridine kinase; Provi 96.0 0.009 1.9E-07 57.4 5.0 37 106-146 3-39 (193)
270 KOG0731 AAA+-type ATPase conta 96.0 0.085 1.8E-06 59.7 13.1 181 97-291 311-520 (774)
271 TIGR03499 FlhF flagellar biosy 96.0 0.036 7.7E-07 56.7 9.4 25 123-147 193-217 (282)
272 COG1224 TIP49 DNA helicase TIP 96.0 0.17 3.6E-06 51.5 13.5 49 95-147 37-88 (450)
273 KOG0730 AAA+-type ATPase [Post 96.0 0.11 2.3E-06 57.2 13.2 155 97-262 434-615 (693)
274 cd03228 ABCC_MRP_Like The MRP 95.9 0.071 1.5E-06 50.1 10.7 113 124-236 28-159 (171)
275 KOG1644 U2-associated snRNP A' 95.9 0.0065 1.4E-07 56.4 3.4 103 468-574 44-149 (233)
276 PRK03839 putative kinase; Prov 95.9 0.0091 2E-07 56.8 4.6 22 126-147 2-23 (180)
277 PRK12608 transcription termina 95.9 0.033 7.1E-07 58.1 8.8 92 105-201 119-229 (380)
278 KOG2035 Replication factor C, 95.9 0.1 2.2E-06 51.1 11.4 212 98-319 14-262 (351)
279 COG0572 Udk Uridine kinase [Nu 95.9 0.0083 1.8E-07 57.3 4.1 25 123-147 7-31 (218)
280 COG5238 RNA1 Ran GTPase-activa 95.9 0.0067 1.5E-07 58.8 3.3 66 459-524 51-130 (388)
281 cd03238 ABC_UvrA The excision 95.9 0.071 1.5E-06 50.1 10.1 119 124-246 21-161 (176)
282 PRK14974 cell division protein 95.8 0.12 2.6E-06 53.8 12.6 106 123-228 139-260 (336)
283 PLN00020 ribulose bisphosphate 95.8 0.022 4.8E-07 58.7 7.0 26 122-147 146-171 (413)
284 cd03214 ABC_Iron-Siderophores_ 95.8 0.078 1.7E-06 50.3 10.5 112 124-235 25-161 (180)
285 PF01583 APS_kinase: Adenylyls 95.8 0.034 7.3E-07 50.6 7.5 24 124-147 2-25 (156)
286 COG0396 sufC Cysteine desulfur 95.8 0.12 2.6E-06 49.4 11.2 25 124-148 30-54 (251)
287 COG1618 Predicted nucleotide k 95.8 0.0064 1.4E-07 54.3 2.6 23 125-147 6-28 (179)
288 PRK00625 shikimate kinase; Pro 95.8 0.057 1.2E-06 50.6 9.2 22 126-147 2-23 (173)
289 cd03247 ABCC_cytochrome_bd The 95.8 0.1 2.2E-06 49.5 11.0 113 124-236 28-161 (178)
290 PRK13948 shikimate kinase; Pro 95.8 0.051 1.1E-06 51.3 8.7 25 123-147 9-33 (182)
291 PRK10733 hflB ATP-dependent me 95.7 0.1 2.2E-06 60.0 12.8 154 98-262 153-335 (644)
292 TIGR01650 PD_CobS cobaltochela 95.7 0.18 3.9E-06 51.9 13.1 42 98-147 46-87 (327)
293 COG2274 SunT ABC-type bacterio 95.7 0.034 7.5E-07 63.8 8.8 53 183-235 618-672 (709)
294 KOG2170 ATPase of the AAA+ sup 95.7 0.046 1E-06 54.2 8.3 115 98-217 83-203 (344)
295 PF13238 AAA_18: AAA domain; P 95.7 0.0074 1.6E-07 53.6 2.8 21 127-147 1-21 (129)
296 PF00485 PRK: Phosphoribulokin 95.7 0.0078 1.7E-07 58.0 3.0 21 126-146 1-21 (194)
297 PRK12723 flagellar biosynthesi 95.7 0.099 2.1E-06 55.6 11.3 96 123-220 173-284 (388)
298 PRK15429 formate hydrogenlyase 95.7 0.022 4.7E-07 66.5 7.1 127 97-231 376-520 (686)
299 cd01131 PilT Pilus retraction 95.6 0.016 3.4E-07 56.0 5.0 106 125-235 2-112 (198)
300 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.6 0.076 1.6E-06 48.2 9.2 101 124-235 26-130 (144)
301 cd00561 CobA_CobO_BtuR ATP:cor 95.6 0.048 1E-06 49.9 7.7 49 184-232 86-138 (159)
302 KOG4579 Leucine-rich repeat (L 95.6 0.0022 4.7E-08 55.5 -0.9 76 454-532 64-140 (177)
303 COG4088 Predicted nucleotide k 95.6 0.022 4.8E-07 53.0 5.4 22 125-146 2-23 (261)
304 KOG0924 mRNA splicing factor A 95.6 0.072 1.6E-06 58.2 10.0 120 123-247 370-528 (1042)
305 PF08298 AAA_PrkA: PrkA AAA do 95.6 0.015 3.2E-07 59.7 4.7 51 96-146 60-110 (358)
306 PRK06547 hypothetical protein; 95.6 0.018 3.9E-07 53.9 4.8 25 123-147 14-38 (172)
307 cd01133 F1-ATPase_beta F1 ATP 95.5 0.027 5.9E-07 56.3 6.2 24 124-147 69-92 (274)
308 PRK08233 hypothetical protein; 95.5 0.012 2.5E-07 56.1 3.6 24 124-147 3-26 (182)
309 PRK05480 uridine/cytidine kina 95.5 0.012 2.5E-07 57.6 3.6 25 123-147 5-29 (209)
310 COG0464 SpoVK ATPases of the A 95.5 0.18 3.9E-06 56.5 13.5 157 98-263 243-424 (494)
311 PTZ00301 uridine kinase; Provi 95.5 0.011 2.5E-07 57.2 3.4 24 123-146 2-25 (210)
312 KOG2123 Uncharacterized conser 95.5 0.0005 1.1E-08 66.5 -5.9 33 616-649 19-51 (388)
313 cd02019 NK Nucleoside/nucleoti 95.5 0.01 2.2E-07 46.0 2.5 22 126-147 1-22 (69)
314 TIGR00235 udk uridine kinase. 95.5 0.012 2.5E-07 57.5 3.3 25 123-147 5-29 (207)
315 COG4618 ArpD ABC-type protease 95.4 0.039 8.5E-07 58.7 7.2 21 125-145 363-383 (580)
316 COG4608 AppF ABC-type oligopep 95.4 0.12 2.5E-06 51.1 9.8 116 124-239 39-177 (268)
317 TIGR00150 HI0065_YjeE ATPase, 95.4 0.024 5.3E-07 50.0 4.7 40 104-147 6-45 (133)
318 KOG0735 AAA+-type ATPase [Post 95.4 0.11 2.4E-06 57.4 10.5 179 96-296 407-617 (952)
319 COG1102 Cmk Cytidylate kinase 95.3 0.015 3.3E-07 52.0 3.3 43 126-170 2-44 (179)
320 PF03969 AFG1_ATPase: AFG1-lik 95.3 0.056 1.2E-06 57.0 8.1 104 123-235 61-170 (362)
321 cd03216 ABC_Carb_Monos_I This 95.3 0.059 1.3E-06 50.2 7.4 109 125-234 27-144 (163)
322 KOG0733 Nuclear AAA ATPase (VC 95.3 0.21 4.6E-06 54.3 12.2 178 99-289 513-718 (802)
323 cd03223 ABCD_peroxisomal_ALDP 95.3 0.1 2.3E-06 48.7 9.0 107 124-235 27-151 (166)
324 KOG0738 AAA+-type ATPase [Post 95.2 0.12 2.5E-06 53.1 9.6 26 123-148 244-269 (491)
325 cd03222 ABC_RNaseL_inhibitor T 95.2 0.059 1.3E-06 50.7 7.2 104 124-236 25-136 (177)
326 PRK09270 nucleoside triphospha 95.2 0.022 4.8E-07 56.4 4.5 25 122-146 31-55 (229)
327 PRK06067 flagellar accessory p 95.2 0.053 1.2E-06 54.0 7.3 36 107-146 12-47 (234)
328 PRK00771 signal recognition pa 95.2 0.2 4.4E-06 54.2 12.0 25 123-147 94-118 (437)
329 cd03246 ABCC_Protease_Secretio 95.2 0.1 2.2E-06 49.2 8.8 112 125-236 29-160 (173)
330 PRK05022 anaerobic nitric oxid 95.2 0.059 1.3E-06 60.3 8.3 129 96-231 186-331 (509)
331 PRK14722 flhF flagellar biosyn 95.2 0.12 2.7E-06 54.3 10.1 79 123-203 136-226 (374)
332 PRK13539 cytochrome c biogenes 95.2 0.2 4.3E-06 48.8 11.0 61 185-248 138-200 (207)
333 cd03217 ABC_FeS_Assembly ABC-t 95.2 0.15 3.2E-06 49.3 10.1 113 124-236 26-168 (200)
334 COG1126 GlnQ ABC-type polar am 95.1 0.27 5.8E-06 46.7 10.9 114 124-237 28-201 (240)
335 cd03369 ABCC_NFT1 Domain 2 of 95.1 0.23 4.9E-06 48.4 11.2 52 185-236 136-188 (207)
336 TIGR00382 clpX endopeptidase C 95.1 0.18 3.8E-06 54.1 11.0 52 96-147 76-139 (413)
337 COG1116 TauB ABC-type nitrate/ 95.0 0.11 2.3E-06 50.6 8.4 22 125-146 30-51 (248)
338 cd00544 CobU Adenosylcobinamid 95.0 0.07 1.5E-06 49.7 6.9 21 127-147 2-22 (169)
339 COG0410 LivF ABC-type branched 95.0 0.085 1.8E-06 50.5 7.4 63 176-238 138-203 (237)
340 cd03283 ABC_MutS-like MutS-lik 95.0 0.17 3.8E-06 48.7 9.9 22 125-146 26-47 (199)
341 TIGR02868 CydC thiol reductant 95.0 0.097 2.1E-06 59.3 9.4 24 123-146 360-383 (529)
342 cd03263 ABC_subfamily_A The AB 95.0 0.22 4.8E-06 49.0 10.9 23 124-146 28-50 (220)
343 COG2019 AdkA Archaeal adenylat 94.9 0.059 1.3E-06 48.6 5.7 23 124-146 4-26 (189)
344 PRK07132 DNA polymerase III su 94.9 1 2.2E-05 46.2 15.6 131 123-261 17-161 (299)
345 KOG3864 Uncharacterized conser 94.9 0.0032 6.8E-08 58.5 -2.4 68 671-743 121-189 (221)
346 TIGR01360 aden_kin_iso1 adenyl 94.8 0.024 5.2E-07 54.3 3.5 25 123-147 2-26 (188)
347 TIGR03574 selen_PSTK L-seryl-t 94.8 0.17 3.7E-06 50.9 9.7 22 126-147 1-22 (249)
348 PF00560 LRR_1: Leucine Rich R 94.8 0.018 3.8E-07 33.1 1.5 19 468-487 2-20 (22)
349 PRK10820 DNA-binding transcrip 94.8 0.088 1.9E-06 59.0 8.2 47 97-147 204-250 (520)
350 COG1117 PstB ABC-type phosphat 94.8 0.32 6.9E-06 46.1 10.3 39 99-145 16-54 (253)
351 COG1119 ModF ABC-type molybden 94.8 0.22 4.8E-06 48.2 9.5 59 177-235 174-237 (257)
352 PRK11174 cysteine/glutathione 94.8 0.098 2.1E-06 60.1 8.8 60 185-247 496-557 (588)
353 cd03230 ABC_DR_subfamily_A Thi 94.8 0.18 3.9E-06 47.5 9.1 113 124-236 26-159 (173)
354 cd03251 ABCC_MsbA MsbA is an e 94.7 0.34 7.4E-06 48.2 11.6 61 184-246 148-209 (234)
355 TIGR00959 ffh signal recogniti 94.7 0.34 7.4E-06 52.3 12.1 42 105-146 77-121 (428)
356 PRK13538 cytochrome c biogenes 94.7 0.38 8.2E-06 46.7 11.6 23 124-146 27-49 (204)
357 PRK10867 signal recognition pa 94.7 0.35 7.5E-06 52.3 12.2 24 123-146 99-122 (433)
358 PRK00279 adk adenylate kinase; 94.7 0.19 4.1E-06 49.3 9.5 22 126-147 2-23 (215)
359 COG1428 Deoxynucleoside kinase 94.7 0.021 4.6E-07 53.8 2.6 25 124-148 4-28 (216)
360 PF06309 Torsin: Torsin; Inte 94.7 0.055 1.2E-06 46.8 4.9 47 98-147 26-76 (127)
361 COG4181 Predicted ABC-type tra 94.7 0.53 1.2E-05 42.8 11.1 83 157-240 123-215 (228)
362 PRK04040 adenylate kinase; Pro 94.7 0.025 5.5E-07 53.9 3.2 23 125-147 3-25 (188)
363 KOG0058 Peptide exporter, ABC 94.7 0.071 1.5E-06 59.5 6.9 53 183-235 613-667 (716)
364 PRK09361 radB DNA repair and r 94.7 0.058 1.2E-06 53.4 5.9 24 123-146 22-45 (225)
365 PF08423 Rad51: Rad51; InterP 94.7 0.096 2.1E-06 52.7 7.4 36 107-146 25-60 (256)
366 cd02027 APSK Adenosine 5'-phos 94.6 0.037 8.1E-07 50.6 4.0 22 126-147 1-22 (149)
367 cd02023 UMPK Uridine monophosp 94.6 0.02 4.4E-07 55.4 2.4 21 126-146 1-21 (198)
368 cd03252 ABCC_Hemolysin The ABC 94.6 0.33 7E-06 48.5 11.2 52 185-236 149-201 (237)
369 COG5238 RNA1 Ran GTPase-activa 94.6 0.034 7.3E-07 54.1 3.8 45 459-504 85-133 (388)
370 cd03244 ABCC_MRP_domain2 Domai 94.6 0.4 8.6E-06 47.2 11.7 23 124-146 30-52 (221)
371 PRK12726 flagellar biosynthesi 94.6 0.15 3.4E-06 53.2 8.8 82 122-203 204-296 (407)
372 PRK10751 molybdopterin-guanine 94.6 0.036 7.8E-07 51.5 3.8 24 123-146 5-28 (173)
373 PRK05439 pantothenate kinase; 94.6 0.049 1.1E-06 55.8 5.2 25 122-146 84-108 (311)
374 PF07726 AAA_3: ATPase family 94.6 0.018 4E-07 49.9 1.8 27 127-155 2-28 (131)
375 cd03245 ABCC_bacteriocin_expor 94.6 0.26 5.7E-06 48.5 10.3 23 124-146 30-52 (220)
376 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.6 0.28 6.2E-06 48.9 10.7 52 185-236 150-202 (238)
377 PF08433 KTI12: Chromatin asso 94.6 0.027 5.8E-07 56.9 3.2 23 125-147 2-24 (270)
378 cd02024 NRK1 Nicotinamide ribo 94.6 0.022 4.7E-07 53.9 2.4 22 126-147 1-22 (187)
379 TIGR02322 phosphon_PhnN phosph 94.6 0.027 5.8E-07 53.5 3.0 23 125-147 2-24 (179)
380 PRK05342 clpX ATP-dependent pr 94.6 0.097 2.1E-06 56.3 7.5 50 97-146 71-130 (412)
381 TIGR00554 panK_bact pantothena 94.6 0.049 1.1E-06 55.4 5.0 25 122-146 60-84 (290)
382 cd02025 PanK Pantothenate kina 94.5 0.021 4.6E-07 56.0 2.3 21 126-146 1-21 (220)
383 KOG2739 Leucine-rich acidic nu 94.5 0.014 3E-07 56.6 1.0 85 488-576 41-127 (260)
384 COG1419 FlhF Flagellar GTP-bin 94.5 0.21 4.5E-06 52.4 9.6 95 123-219 202-310 (407)
385 PRK12727 flagellar biosynthesi 94.5 0.1 2.2E-06 57.0 7.6 24 123-146 349-372 (559)
386 cd03224 ABC_TM1139_LivF_branch 94.5 0.41 8.9E-06 47.1 11.6 24 123-146 25-48 (222)
387 PRK14247 phosphate ABC transpo 94.5 0.31 6.8E-06 49.0 10.9 23 124-146 29-51 (250)
388 PRK00131 aroK shikimate kinase 94.5 0.029 6.3E-07 52.9 3.1 24 124-147 4-27 (175)
389 TIGR02012 tigrfam_recA protein 94.5 0.1 2.2E-06 53.9 7.1 81 122-202 53-143 (321)
390 cd03233 ABC_PDR_domain1 The pl 94.5 0.26 5.7E-06 47.7 9.8 23 124-146 33-55 (202)
391 cd03289 ABCC_CFTR2 The CFTR su 94.5 0.19 4.1E-06 51.2 9.1 23 124-146 30-52 (275)
392 TIGR01425 SRP54_euk signal rec 94.5 0.54 1.2E-05 50.5 12.7 24 123-146 99-122 (429)
393 cd03282 ABC_MSH4_euk MutS4 hom 94.4 0.17 3.7E-06 48.9 8.3 112 124-239 29-158 (204)
394 PF07728 AAA_5: AAA domain (dy 94.4 0.028 6.2E-07 50.7 2.8 21 127-147 2-22 (139)
395 cd00983 recA RecA is a bacter 94.4 0.13 2.7E-06 53.2 7.7 79 123-201 54-142 (325)
396 TIGR01193 bacteriocin_ABC ABC- 94.4 0.12 2.6E-06 60.8 8.7 23 124-146 500-522 (708)
397 cd03281 ABC_MSH5_euk MutS5 hom 94.4 0.07 1.5E-06 52.1 5.6 23 124-146 29-51 (213)
398 PRK00889 adenylylsulfate kinas 94.4 0.036 7.7E-07 52.4 3.5 25 123-147 3-27 (175)
399 KOG2123 Uncharacterized conser 94.4 0.004 8.6E-08 60.5 -3.0 59 463-524 38-98 (388)
400 COG0465 HflB ATP-dependent Zn 94.4 0.46 1E-05 52.8 12.4 184 94-291 147-357 (596)
401 cd00227 CPT Chloramphenicol (C 94.4 0.032 6.9E-07 52.7 3.1 23 125-147 3-25 (175)
402 PF01078 Mg_chelatase: Magnesi 94.4 0.068 1.5E-06 50.9 5.2 42 97-146 3-44 (206)
403 cd03264 ABC_drug_resistance_li 94.4 0.39 8.5E-06 46.9 10.9 21 126-146 27-47 (211)
404 TIGR01359 UMP_CMP_kin_fam UMP- 94.4 0.026 5.6E-07 53.8 2.4 22 126-147 1-22 (183)
405 KOG0743 AAA+-type ATPase [Post 94.4 0.52 1.1E-05 49.9 11.9 153 125-301 236-415 (457)
406 TIGR00390 hslU ATP-dependent p 94.3 0.052 1.1E-06 57.4 4.7 51 97-147 12-70 (441)
407 PRK06217 hypothetical protein; 94.3 0.029 6.4E-07 53.4 2.7 22 126-147 3-24 (183)
408 cd02021 GntK Gluconate kinase 94.3 0.028 6.1E-07 51.5 2.5 22 126-147 1-22 (150)
409 PF03193 DUF258: Protein of un 94.3 0.064 1.4E-06 49.1 4.7 35 104-147 24-58 (161)
410 TIGR03522 GldA_ABC_ATP gliding 94.3 0.46 1E-05 49.2 11.8 52 184-235 143-195 (301)
411 PF03308 ArgK: ArgK protein; 94.3 0.062 1.3E-06 52.7 4.8 38 105-146 14-51 (266)
412 cd03115 SRP The signal recogni 94.3 0.22 4.7E-06 46.9 8.6 21 126-146 2-22 (173)
413 PRK13657 cyclic beta-1,2-gluca 94.3 0.19 4.1E-06 57.8 9.7 23 124-146 361-383 (588)
414 PF02463 SMC_N: RecF/RecN/SMC 94.3 0.41 9E-06 47.0 10.9 49 191-239 157-206 (220)
415 COG1936 Predicted nucleotide k 94.3 0.034 7.3E-07 50.6 2.7 20 126-145 2-21 (180)
416 TIGR02238 recomb_DMC1 meiotic 94.3 0.12 2.6E-06 53.5 7.2 35 107-145 83-117 (313)
417 TIGR03263 guanyl_kin guanylate 94.3 0.035 7.5E-07 52.8 3.1 23 125-147 2-24 (180)
418 cd02028 UMPK_like Uridine mono 94.2 0.03 6.4E-07 53.0 2.5 22 126-147 1-22 (179)
419 TIGR03796 NHPM_micro_ABC1 NHPM 94.2 0.13 2.9E-06 60.5 8.6 58 185-246 626-684 (710)
420 cd03254 ABCC_Glucan_exporter_l 94.2 0.44 9.5E-06 47.2 11.1 53 184-236 149-202 (229)
421 PRK10923 glnG nitrogen regulat 94.2 0.15 3.3E-06 56.7 8.6 47 97-147 138-184 (469)
422 TIGR03375 type_I_sec_LssB type 94.2 0.17 3.8E-06 59.3 9.4 23 124-146 491-513 (694)
423 PRK13650 cbiO cobalt transport 94.2 0.38 8.3E-06 49.3 10.8 53 184-236 150-205 (279)
424 KOG0927 Predicted transporter 94.2 0.36 7.8E-06 52.0 10.5 59 177-236 224-283 (614)
425 TIGR02858 spore_III_AA stage I 94.2 0.63 1.4E-05 47.0 12.0 120 106-236 98-233 (270)
426 PRK05201 hslU ATP-dependent pr 94.2 0.07 1.5E-06 56.5 5.3 52 96-147 14-73 (443)
427 cd03253 ABCC_ATM1_transporter 94.2 0.38 8.3E-06 47.9 10.5 54 184-237 147-201 (236)
428 PF00560 LRR_1: Leucine Rich R 94.2 0.023 5E-07 32.6 1.0 21 491-512 1-21 (22)
429 PRK02496 adk adenylate kinase; 94.1 0.25 5.4E-06 47.1 8.7 22 126-147 3-24 (184)
430 cd03300 ABC_PotA_N PotA is an 94.1 0.37 8.1E-06 47.8 10.3 24 124-147 26-49 (232)
431 PRK00300 gmk guanylate kinase; 94.1 0.041 8.8E-07 53.6 3.3 25 123-147 4-28 (205)
432 TIGR00958 3a01208 Conjugate Tr 94.1 0.16 3.5E-06 59.6 8.8 24 123-146 506-529 (711)
433 PRK09354 recA recombinase A; P 94.1 0.15 3.2E-06 53.1 7.5 81 122-202 58-148 (349)
434 TIGR00968 3a0106s01 sulfate AB 94.1 0.4 8.7E-06 47.8 10.5 23 124-146 26-48 (237)
435 PRK11388 DNA-binding transcrip 94.1 0.11 2.5E-06 60.1 7.4 48 96-147 324-371 (638)
436 cd01122 GP4d_helicase GP4d_hel 94.1 0.45 9.7E-06 48.6 11.0 25 123-147 29-53 (271)
437 PTZ00088 adenylate kinase 1; P 94.0 0.1 2.2E-06 51.3 5.9 22 126-147 8-29 (229)
438 COG0529 CysC Adenylylsulfate k 94.0 0.052 1.1E-06 49.5 3.4 24 123-146 22-45 (197)
439 PRK05537 bifunctional sulfate 94.0 0.078 1.7E-06 59.7 5.7 49 95-147 367-415 (568)
440 PRK13640 cbiO cobalt transport 94.0 0.51 1.1E-05 48.4 11.3 52 185-236 154-208 (282)
441 TIGR02857 CydD thiol reductant 94.0 0.25 5.4E-06 56.0 9.8 24 123-146 347-370 (529)
442 TIGR03797 NHPM_micro_ABC2 NHPM 94.0 0.17 3.8E-06 59.3 8.8 49 185-234 599-648 (686)
443 CHL00206 ycf2 Ycf2; Provisiona 94.0 0.59 1.3E-05 58.3 13.0 25 123-147 1629-1653(2281)
444 cd00820 PEPCK_HprK Phosphoenol 94.0 0.055 1.2E-06 45.6 3.4 22 124-145 15-36 (107)
445 TIGR01192 chvA glucan exporter 94.0 0.24 5.3E-06 56.7 9.7 24 123-146 360-383 (585)
446 COG4152 ABC-type uncharacteriz 94.0 0.41 8.9E-06 46.3 9.4 24 123-146 27-50 (300)
447 cd03213 ABCG_EPDR ABCG transpo 94.0 0.45 9.7E-06 45.7 10.1 24 124-147 35-58 (194)
448 cd02020 CMPK Cytidine monophos 94.0 0.036 7.8E-07 50.5 2.4 22 126-147 1-22 (147)
449 TIGR00708 cobA cob(I)alamin ad 93.9 0.3 6.5E-06 45.3 8.4 51 182-232 86-140 (173)
450 cd03285 ABC_MSH2_euk MutS2 hom 93.9 0.1 2.2E-06 51.3 5.6 24 123-146 29-52 (222)
451 cd01125 repA Hexameric Replica 93.9 0.44 9.5E-06 47.6 10.4 21 126-146 3-23 (239)
452 TIGR01420 pilT_fam pilus retra 93.9 0.13 2.9E-06 54.2 7.0 105 125-234 123-232 (343)
453 PRK03846 adenylylsulfate kinas 93.9 0.053 1.1E-06 52.4 3.7 24 123-146 23-46 (198)
454 KOG0728 26S proteasome regulat 93.9 2.4 5.2E-05 41.0 14.3 50 98-147 147-204 (404)
455 PF00406 ADK: Adenylate kinase 93.9 0.13 2.8E-06 47.2 6.0 19 129-147 1-19 (151)
456 PF03205 MobB: Molybdopterin g 93.9 0.046 1E-06 49.2 3.0 22 125-146 1-22 (140)
457 PRK13543 cytochrome c biogenes 93.9 0.53 1.1E-05 46.1 10.8 23 124-146 37-59 (214)
458 COG3840 ThiQ ABC-type thiamine 93.9 0.75 1.6E-05 42.4 10.4 22 124-145 25-46 (231)
459 COG0563 Adk Adenylate kinase a 93.9 0.041 8.8E-07 51.8 2.7 22 126-147 2-23 (178)
460 KOG0729 26S proteasome regulat 93.9 0.42 9E-06 46.4 9.3 95 97-201 177-279 (435)
461 PRK14738 gmk guanylate kinase; 93.9 0.055 1.2E-06 52.6 3.7 25 123-147 12-36 (206)
462 PRK15424 propionate catabolism 93.9 0.14 3E-06 57.0 7.2 47 97-147 219-265 (538)
463 PRK13947 shikimate kinase; Pro 93.8 0.042 9E-07 51.7 2.7 22 126-147 3-24 (171)
464 COG2401 ABC-type ATPase fused 93.8 0.21 4.5E-06 51.9 7.7 144 99-242 373-578 (593)
465 PF12775 AAA_7: P-loop contain 93.8 0.066 1.4E-06 54.3 4.3 34 107-147 23-56 (272)
466 PRK14737 gmk guanylate kinase; 93.8 0.058 1.3E-06 51.3 3.7 25 123-147 3-27 (186)
467 KOG0652 26S proteasome regulat 93.8 1 2.2E-05 43.7 11.8 57 98-156 172-235 (424)
468 KOG0736 Peroxisome assembly fa 93.8 0.28 6E-06 55.0 9.1 97 97-203 672-775 (953)
469 cd00071 GMPK Guanosine monopho 93.8 0.043 9.3E-07 49.3 2.6 22 126-147 1-22 (137)
470 PRK12339 2-phosphoglycerate ki 93.8 0.056 1.2E-06 51.8 3.5 24 124-147 3-26 (197)
471 PRK10078 ribose 1,5-bisphospho 93.8 0.049 1.1E-06 52.1 3.1 23 125-147 3-25 (186)
472 TIGR02030 BchI-ChlI magnesium 93.8 0.09 1.9E-06 54.9 5.2 45 96-146 3-47 (337)
473 PLN02318 phosphoribulokinase/u 93.7 0.075 1.6E-06 58.6 4.7 25 123-147 64-88 (656)
474 PRK13407 bchI magnesium chelat 93.7 0.07 1.5E-06 55.6 4.3 46 95-146 6-51 (334)
475 PRK13949 shikimate kinase; Pro 93.7 0.048 1E-06 51.0 2.9 22 126-147 3-24 (169)
476 TIGR03411 urea_trans_UrtD urea 93.7 0.89 1.9E-05 45.5 12.3 22 125-146 29-50 (242)
477 cd01393 recA_like RecA is a b 93.7 0.22 4.7E-06 49.3 7.8 24 123-146 18-41 (226)
478 PF10236 DAP3: Mitochondrial r 93.7 1.1 2.4E-05 46.5 13.1 48 243-291 258-305 (309)
479 PRK11614 livF leucine/isoleuci 93.7 0.63 1.4E-05 46.4 11.1 23 124-146 31-53 (237)
480 COG0703 AroK Shikimate kinase 93.7 0.14 3.1E-06 47.1 5.7 21 126-146 4-24 (172)
481 KOG0739 AAA+-type ATPase [Post 93.7 0.23 4.9E-06 49.2 7.4 94 98-202 134-235 (439)
482 PF03215 Rad17: Rad17 cell cyc 93.7 0.074 1.6E-06 58.9 4.7 58 89-147 11-68 (519)
483 KOG0056 Heavy metal exporter H 93.7 0.24 5.2E-06 52.4 8.0 24 123-146 563-586 (790)
484 COG2842 Uncharacterized ATPase 93.7 0.95 2.1E-05 45.3 11.8 120 95-222 70-195 (297)
485 PRK15115 response regulator Gl 93.7 0.31 6.7E-06 53.9 9.7 126 98-232 135-279 (444)
486 PRK11160 cysteine/glutathione 93.7 0.25 5.3E-06 56.5 9.0 24 123-146 365-388 (574)
487 PF12780 AAA_8: P-loop contain 93.7 0.64 1.4E-05 46.9 10.9 87 106-218 20-115 (268)
488 KOG0735 AAA+-type ATPase [Post 93.7 1.9 4.1E-05 48.3 14.9 178 98-289 668-870 (952)
489 cd03250 ABCC_MRP_domain1 Domai 93.6 0.69 1.5E-05 44.9 10.9 24 124-147 31-54 (204)
490 TIGR03410 urea_trans_UrtE urea 93.6 0.76 1.6E-05 45.6 11.3 23 124-146 26-48 (230)
491 CHL00081 chlI Mg-protoporyphyr 93.6 0.078 1.7E-06 55.4 4.3 46 95-146 15-60 (350)
492 TIGR01188 drrA daunorubicin re 93.6 0.65 1.4E-05 48.2 11.2 23 124-146 19-41 (302)
493 cd03248 ABCC_TAP TAP, the Tran 93.5 0.78 1.7E-05 45.3 11.3 23 124-146 40-62 (226)
494 PF08477 Miro: Miro-like prote 93.5 0.059 1.3E-06 47.0 2.9 22 127-148 2-23 (119)
495 PRK14530 adenylate kinase; Pro 93.5 0.052 1.1E-06 53.2 2.8 22 126-147 5-26 (215)
496 cd00267 ABC_ATPase ABC (ATP-bi 93.5 0.28 6E-06 45.3 7.5 112 125-237 26-145 (157)
497 TIGR01313 therm_gnt_kin carboh 93.5 0.045 9.7E-07 51.0 2.2 21 127-147 1-21 (163)
498 PRK05057 aroK shikimate kinase 93.5 0.059 1.3E-06 50.7 3.0 23 125-147 5-27 (172)
499 cd00464 SK Shikimate kinase (S 93.5 0.053 1.2E-06 49.9 2.7 21 127-147 2-22 (154)
500 COG0194 Gmk Guanylate kinase [ 93.5 0.065 1.4E-06 49.6 3.1 25 124-148 4-28 (191)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-74 Score=657.32 Aligned_cols=550 Identities=28% Similarity=0.436 Sum_probs=441.7
Q ss_pred CchhhhhHHhhHHhhhhccCcccccccccccccCCccccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcCcccccccc
Q 035555 1 MEDVLDEWSTARLKLKINGVDALVCLEKVCSFFPAASCFGCNPLVLCRDIALKVREINESLDDIAKQKDQFGFAVNVIKS 80 (767)
Q Consensus 1 ~eD~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~l~~i~~~~~~~~~~~~~~~~ 80 (767)
+||+++.|..+..+++..+.... .... ... .|+| .+++..+..+..+..++-++.+.+..++........
T Consensus 71 ~e~~~~~~~v~~~~~~~~~~l~~--~~~~---~~~-~c~~----~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~ 140 (889)
T KOG4658|consen 71 AEDIIWLFLVEEIERKANDLLST--RSVE---RQR-LCLC----GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVV 140 (889)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhh--hHHH---HHH-Hhhh----hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecc
Confidence 58899999999988766543100 0001 111 1232 677777777777778877777777777644322111
Q ss_pred c--cccCCCCcCCCCCCCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccc-hhhhhhh-
Q 035555 81 N--ERADERVPSISSIDESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDD-VKKILRK- 156 (767)
Q Consensus 81 ~--~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~- 156 (767)
. ..+...+++.+..+... ||.++.++++...|.++. ..+|+|+||||+||||||++++|+.. ++.+|+.
T Consensus 141 ~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~ 213 (889)
T KOG4658|consen 141 GESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGV 213 (889)
T ss_pred cccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceE
Confidence 1 11223344444444445 999999999999998763 38999999999999999999999987 8999987
Q ss_pred ----------HHHHHHHHHHHhhCCCCCcc--chHHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcE
Q 035555 157 ----------EYGIARAIIEALTYSSSNFV--EFQSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSK 224 (767)
Q Consensus 157 ----------~~~i~~~i~~~l~~~~~~~~--~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 224 (767)
...++.+|++.++....... ..++.+..|.+.|+++||+|||||||+. .+|+.+..++|...+||+
T Consensus 214 iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~K 291 (889)
T KOG4658|consen 214 IWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSK 291 (889)
T ss_pred EEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeE
Confidence 88999999998886444333 3468899999999999999999999987 569999999999989999
Q ss_pred EEEEcCchhHHhh-hcCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHHhHHhcCC
Q 035555 225 ILITTRKETVARI-MGSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIASLLRSKN 303 (767)
Q Consensus 225 ilvTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~ 303 (767)
|++|||++.|+.. ++....++++.|+++|||+||.+.++.... ...+.++++|++++++|+|+|||++++|+.|+.|.
T Consensus 292 vvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~ 370 (889)
T KOG4658|consen 292 VVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKK 370 (889)
T ss_pred EEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCC
Confidence 9999999999988 888899999999999999999999987644 33344899999999999999999999999999999
Q ss_pred CHHHHHHHHhhhccc----chhhhhhhhhhHHhhcccCCHHHHHHHHHhccCCCCcccChHHHHHHHHHcCCccCCC-CC
Q 035555 304 TEKEWQNILESEIWE----IEEVEKNLLAPLLLSYNELPSKVKQCFTYCAIFPKNSKIWKDKLIELWMAQGFLNNKR-SK 378 (767)
Q Consensus 304 ~~~~w~~~~~~~~~~----~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~-~~ 378 (767)
+..+|+++.+...+. .++..+.++.++.+||+.||+++|.||+|||+||+|+.|+++.++.+|+|+||+.+.. ..
T Consensus 371 t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~ 450 (889)
T KOG4658|consen 371 TVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGE 450 (889)
T ss_pred cHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCcccccc
Confidence 999999999866554 2344678999999999999999999999999999999999999999999999998844 57
Q ss_pred cHHHHHHHHHHHHHhcCCCcccccCCCCCEEEEEeChHHHHHHHHhhc-----cceEEEeec-cccccc-----------
Q 035555 379 EMEEIGEEYFNILASRSFFQDFERGYDGKIYQCKVHDIVHDFAQFLCR-----KECLMVEIL-CGEEAL----------- 441 (767)
Q Consensus 379 ~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~mHdlv~~~a~~~~~-----~e~~~~~~~-~~~~~~----------- 441 (767)
.+++.|++|+++|++++++...... ++..+|+|||+||++|.++++ .+..+.... ...+.+
T Consensus 451 ~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~ 528 (889)
T KOG4658|consen 451 TAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRM 528 (889)
T ss_pred chhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEE
Confidence 8899999999999999999976643 566789999999999999999 555444432 111111
Q ss_pred -------------ccCceeeeeccCC----Cccccc-ccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccc
Q 035555 442 -------------KLIKCRRWRCDNY----IKEIPT-NIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNL 503 (767)
Q Consensus 442 -------------~~~~~L~~l~l~~----~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l 503 (767)
..++.|+.|-+.. +..++. .|..|++|++|||++|..+..+|+.++.|.+||+|+++++. +
T Consensus 529 s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I 607 (889)
T KOG4658|consen 529 SLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-I 607 (889)
T ss_pred EEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-c
Confidence 2445555554442 444443 37889999999999998889999999999999999999988 8
Q ss_pred cccCcccccCcCCcEeeCCCCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeC
Q 035555 504 RQLPQGIGKLRKLMYLDNDYTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHG 574 (767)
Q Consensus 504 ~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~ 574 (767)
..+|.+++++++|.+|++..+..+..+|.....|.+|++|.++... ...+...+.++.+|.+|+.+.+..
T Consensus 608 ~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 608 SHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred cccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeec
Confidence 9999999999999999999987777776666679999999888765 233356677888888888777654
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.6e-60 Score=574.56 Aligned_cols=626 Identities=21% Similarity=0.262 Sum_probs=409.1
Q ss_pred HHHHHHHHHHHHHHHhhhhcCccccc-----c-ccccccCCCCcCCCCCCCCccccchhHHHHHHHHHhcCCCCCCCCCE
Q 035555 52 LKVREINESLDDIAKQKDQFGFAVNV-----I-KSNERADERVPSISSIDESEIFGREKEKSELVNRLLCESSKEQKGPC 125 (767)
Q Consensus 52 ~~i~~i~~~l~~i~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~ 125 (767)
.++++|++.|.++++.. .+...... . .....+.......++.+..++|||++.++++..+|.... .+++
T Consensus 134 ~~~~~w~~al~~~~~~~-g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~----~~~~ 208 (1153)
T PLN03210 134 DEKIQWKQALTDVANIL-GYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLES----EEVR 208 (1153)
T ss_pred hHHHHHHHHHHHHhCcC-ceecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHcccc----CceE
Confidence 56888999999887743 22221110 0 111112222233344456789999999999999886443 3789
Q ss_pred EEEEEccCCChHHHHHHHHHcccchhhhhhh--------------------------HHHHHHHHHHHhhCCCCCccchH
Q 035555 126 VISLVGMGGIGKTTLAQFAYNNDDVKKILRK--------------------------EYGIARAIIEALTYSSSNFVEFQ 179 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--------------------------~~~i~~~i~~~l~~~~~~~~~~~ 179 (767)
+|+||||||+||||||+++|+. +..+|+. ...+...++..+...... ...
T Consensus 209 vvgI~G~gGiGKTTLA~~l~~~--l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~--~~~ 284 (1153)
T PLN03210 209 MVGIWGSSGIGKTTIARALFSR--LSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDI--KIY 284 (1153)
T ss_pred EEEEEcCCCCchHHHHHHHHHH--HhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCc--ccC
Confidence 9999999999999999999984 4445532 112233333333221110 000
Q ss_pred HHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCchhHHhhhcCcceEecCCCChhHHHHHHH
Q 035555 180 SLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKETVARIMGSADIISVNVLSETECWLVFE 259 (767)
Q Consensus 180 ~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~~~~~l~~ 259 (767)
....+++.++++|+||||||||+. ..|+.+.......++||+||||||+..++..++....|+++.++.++||+||+
T Consensus 285 -~~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~ 361 (1153)
T PLN03210 285 -HLGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFC 361 (1153)
T ss_pred -CHHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHH
Confidence 114567788999999999999864 67888887777778999999999999999887778899999999999999999
Q ss_pred HhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHHhHHhcCCCHHHHHHHHhhhcccchhhhhhhhhhHHhhcccCCH
Q 035555 260 SLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIASLLRSKNTEKEWQNILESEIWEIEEVEKNLLAPLLLSYNELPS 339 (767)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~ 339 (767)
++||+... ...++.+++++|+++|+|+|||++++|++|+++ +..+|..++++..... +..|..+|++||+.|++
T Consensus 362 ~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~---~~~I~~~L~~SYd~L~~ 435 (1153)
T PLN03210 362 RSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGL---DGKIEKTLRVSYDGLNN 435 (1153)
T ss_pred HHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCc---cHHHHHHHHHhhhccCc
Confidence 99997653 345688999999999999999999999999987 6789999998765432 35799999999999987
Q ss_pred -HHHHHHHHhccCCCCcccChHHHHHHHHHcCCccCCCCCcHHHHHHHHHHHHHhcCCCcccccCCCCCEEEEEeChHHH
Q 035555 340 -KVKQCFTYCAIFPKNSKIWKDKLIELWMAQGFLNNKRSKEMEEIGEEYFNILASRSFFQDFERGYDGKIYQCKVHDIVH 418 (767)
Q Consensus 340 -~~k~~f~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~mHdlv~ 418 (767)
..|.||+++|+|+.+..++ .+..|++.+.... +..++.|+++||++.... .+.|||++|
T Consensus 436 ~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~l~~L~~ksLi~~~~~-------~~~MHdLl~ 495 (1153)
T PLN03210 436 KKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------NIGLKNLVDKSLIHVRED-------IVEMHSLLQ 495 (1153)
T ss_pred cchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------hhChHHHHhcCCEEEcCC-------eEEhhhHHH
Confidence 6999999999999887653 4667777654432 223889999999986432 389999999
Q ss_pred HHHHHhhccce-------EEEee---------c--------------ccccc------cccCce----------------
Q 035555 419 DFAQFLCRKEC-------LMVEI---------L--------------CGEEA------LKLIKC---------------- 446 (767)
Q Consensus 419 ~~a~~~~~~e~-------~~~~~---------~--------------~~~~~------~~~~~~---------------- 446 (767)
++|+.+++.+. +.... . ...+. ...++.
T Consensus 496 ~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~ 575 (1153)
T PLN03210 496 EMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKE 575 (1153)
T ss_pred HHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccccccccc
Confidence 99999986542 00000 0 00000 011112
Q ss_pred ---------------eeeeccC------------------------CCcccccccccCCcccEEeecCCccccccchhhc
Q 035555 447 ---------------RRWRCDN------------------------YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLC 487 (767)
Q Consensus 447 ---------------L~~l~l~------------------------~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~ 487 (767)
||.|++. .+..+|..+..+++|++|+|++|..++.+|. ++
T Consensus 576 ~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls 654 (1153)
T PLN03210 576 VRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LS 654 (1153)
T ss_pred ceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cc
Confidence 3333222 1223344445556666666665554555553 55
Q ss_pred CCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCC
Q 035555 488 ELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILL 567 (767)
Q Consensus 488 ~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L 567 (767)
.+++|++|+|++|..+..+|..++.+++|++|++++|..+..+|..+ .+++|+.|.+..+.... .+.. ...+|
T Consensus 655 ~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~----~~p~--~~~nL 727 (1153)
T PLN03210 655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLK----SFPD--ISTNI 727 (1153)
T ss_pred cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcc----cccc--ccCCc
Confidence 56666666666666566666666666666666666665556666544 45555555443321110 0000 01122
Q ss_pred CCeeeeCCC--CCCC-----------------------hhhhHHhhccCCCCcCceEEEecCC-ccCCccccCCCCccEE
Q 035555 568 RECRIHGLG--DVSD-----------------------VGEARRAELEKKKNLFDLELRFDCN-VIPKNWIMSLTNLRYL 621 (767)
Q Consensus 568 ~~L~i~~l~--~~~~-----------------------~~~~~~~~l~~~~~L~~L~l~~~~~-~~~p~~~~~l~~L~~L 621 (767)
+.|.+.+.. .++. ............++|+.|+++.|.. ..+|.++.++++|+.|
T Consensus 728 ~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L 807 (1153)
T PLN03210 728 SWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHL 807 (1153)
T ss_pred CeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEE
Confidence 222222110 0000 0000000011234666677766643 3567677777777777
Q ss_pred EEeccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCccCCcccccc
Q 035555 622 SLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEI 701 (767)
Q Consensus 622 ~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~ 701 (767)
+|++|..++.+|....+++|++|+|++|..+..++. ..++|+.|+|+++ .++.++. .+
T Consensus 808 ~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~---------------~~~nL~~L~Ls~n-~i~~iP~------si 865 (1153)
T PLN03210 808 EIENCINLETLPTGINLESLESLDLSGCSRLRTFPD---------------ISTNISDLNLSRT-GIEEVPW------WI 865 (1153)
T ss_pred ECCCCCCcCeeCCCCCccccCEEECCCCCccccccc---------------cccccCEeECCCC-CCccChH------HH
Confidence 777777777777655677777777777765544332 2356777777776 4554443 35
Q ss_pred ccCcccceEeeccCccccCCCcCCCCCCCCcEEEecCCCchhHHh
Q 035555 702 IIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGCPIFRER 746 (767)
Q Consensus 702 ~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c~~l~~~ 746 (767)
..+++|+.|++++|++++.+|..+..+++|+.|++ .+|++|++.
T Consensus 866 ~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l-~~C~~L~~~ 909 (1153)
T PLN03210 866 EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDF-SDCGALTEA 909 (1153)
T ss_pred hcCCCCCEEECCCCCCcCccCcccccccCCCeeec-CCCcccccc
Confidence 67899999999999999999988888999999999 899988653
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.3e-41 Score=352.87 Aligned_cols=267 Identities=38% Similarity=0.621 Sum_probs=214.2
Q ss_pred chhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhh-----------HHHHHHHHHHHhhC
Q 035555 102 REKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK-----------EYGIARAIIEALTY 170 (767)
Q Consensus 102 r~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-----------~~~i~~~i~~~l~~ 170 (767)
||.++++|.+.|.... .+.++|+|+||||+||||||.+++++..++.+|+. ..++...|++.+..
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7999999999998753 37899999999999999999999998668888865 67788889999987
Q ss_pred CCC---CccchHHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCchhHHhhhcC-cceEec
Q 035555 171 SSS---NFVEFQSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKETVARIMGS-ADIISV 246 (767)
Q Consensus 171 ~~~---~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~-~~~~~l 246 (767)
... ...+.++....+.+.++++++||||||||+. ..|+.+...++....|++||||||+..++..++. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 643 4467778999999999999999999999875 5888888888877789999999999998877765 779999
Q ss_pred CCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHHhHHhcCCCHHHHHHHHhhhcccch---hhh
Q 035555 247 NVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIASLLRSKNTEKEWQNILESEIWEIE---EVE 323 (767)
Q Consensus 247 ~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~---~~~ 323 (767)
++|+.++|++||.+.++... .......++++++|+++|+|+||||+++|++|+.+.+..+|...++....... ...
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987554 12234456679999999999999999999999776667889998876554443 235
Q ss_pred hhhhhhHHhhcccCCHHHHHHHHHhccCCCCcccChHHHHHHHHHcCCccCC
Q 035555 324 KNLLAPLLLSYNELPSKVKQCFTYCAIFPKNSKIWKDKLIELWMAQGFLNNK 375 (767)
Q Consensus 324 ~~i~~~l~~sy~~L~~~~k~~f~~~s~fp~~~~i~~~~li~~w~a~g~~~~~ 375 (767)
..++.++.+||+.||++.|.||.+||+||+++.|+++.++++|+++|++...
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 7799999999999999999999999999999999999999999999999764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=4.2e-20 Score=224.34 Aligned_cols=284 Identities=18% Similarity=0.128 Sum_probs=156.2
Q ss_pred CceeeeeccCC--C-cccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEee
Q 035555 444 IKCRRWRCDNY--I-KEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLD 520 (767)
Q Consensus 444 ~~~L~~l~l~~--~-~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~ 520 (767)
++.|++|+++. + ..+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 45566666652 2 24566666666667776666664445666666666666666666664455666666666666666
Q ss_pred CCCCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEE
Q 035555 521 NDYTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLEL 600 (767)
Q Consensus 521 l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 600 (767)
+++|.....+|..++.+++|++|++..+... +.....+..+++|+.|.+++.. .....+..+.++++|+.|++
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~----l~~~~p~~l~~l~~L~~L~L 291 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT---GPIPSSLGNLKNLQYLFLYQNK----LSGPIPPSIFSLQKLISLDL 291 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceec---cccChhHhCCCCCCEEECcCCe----eeccCchhHhhccCcCEEEC
Confidence 6666444456666666666666655443332 2233455556666666555421 11112233445556666666
Q ss_pred EecCCc-cCCccccCCCCccEEEEeccCCCCCCCC-CCCCCCCCeeeecCCCCceEecccccCCCCC------------C
Q 035555 601 RFDCNV-IPKNWIMSLTNLRYLSLSLFKNCEQLLP-LGKLQSLEYLQIGGMHGVKRVGNEFLGVESD------------T 666 (767)
Q Consensus 601 ~~~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~------------~ 666 (767)
++|... .+|.++..+++|+.|++++|.....+|. +..+++|+.|++++|.....++..+...... .
T Consensus 292 s~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~ 371 (968)
T PLN00113 292 SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE 371 (968)
T ss_pred cCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEee
Confidence 655543 4455555566666666665544433332 4555666666665554222222211100000 0
Q ss_pred CCccccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCccccCCCcCCCCCCCCcEEEecCCCc
Q 035555 667 NGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGCP 741 (767)
Q Consensus 667 ~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c~ 741 (767)
.+..+..+++|+.|++++|. + .+..+..+..+++|+.|++++|.....+|..+..+++|+.|++ ++|.
T Consensus 372 ~p~~~~~~~~L~~L~l~~n~-l-----~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L-s~N~ 439 (968)
T PLN00113 372 IPEGLCSSGNLFKLILFSNS-L-----EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI-SNNN 439 (968)
T ss_pred CChhHhCcCCCCEEECcCCE-e-----cccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEEC-cCCc
Confidence 00111234455555555542 1 1122334567888888888888655577877888888999988 5553
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.80 E-value=1.5e-19 Score=219.49 Aligned_cols=287 Identities=18% Similarity=0.131 Sum_probs=211.6
Q ss_pred ccCceeeeeccCCC---cccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcE
Q 035555 442 KLIKCRRWRCDNYI---KEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMY 518 (767)
Q Consensus 442 ~~~~~L~~l~l~~~---~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~ 518 (767)
..++.|++|+++.. ..+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++.+++|++
T Consensus 161 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 240 (968)
T PLN00113 161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240 (968)
T ss_pred hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCE
Confidence 35778888888742 367888999999999999999855678888999999999999998866678888999999999
Q ss_pred eeCCCCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCce
Q 035555 519 LDNDYTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDL 598 (767)
Q Consensus 519 L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L 598 (767)
|++++|.....+|..++.+++|+.|.+..+... +.....+..+++|+.|+++++. .....+..+.++++|+.|
T Consensus 241 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~Ls~n~----l~~~~p~~~~~l~~L~~L 313 (968)
T PLN00113 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS---GPIPPSIFSLQKLISLDLSDNS----LSGEIPELVIQLQNLEIL 313 (968)
T ss_pred EECcCceeccccChhHhCCCCCCEEECcCCeee---ccCchhHhhccCcCEEECcCCe----eccCCChhHcCCCCCcEE
Confidence 999988555678888888888888877654433 2344567777888888887642 222233456678888888
Q ss_pred EEEecCCc-cCCccccCCCCccEEEEeccCCCCCCCC-CCCCCCCCeeeecCCCCceEecccccCCCCC-----------
Q 035555 599 ELRFDCNV-IPKNWIMSLTNLRYLSLSLFKNCEQLLP-LGKLQSLEYLQIGGMHGVKRVGNEFLGVESD----------- 665 (767)
Q Consensus 599 ~l~~~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~----------- 665 (767)
++++|... ..|.++..+++|+.|++++|.....+|. ++.+++|+.|++++|.....++..+......
T Consensus 314 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~ 393 (968)
T PLN00113 314 HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393 (968)
T ss_pred ECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEec
Confidence 88888764 5677778888888888888876656664 6778888888888876333333332221110
Q ss_pred -CCCccccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCccccCCCcCCCCCCCCcEEEecCCCch
Q 035555 666 -TNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGCPI 742 (767)
Q Consensus 666 -~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c~~ 742 (767)
..+..+..+++|+.|++++|. +. +..+..+..+++|+.|++++|.....+|..+..+++|+.|++ .+|..
T Consensus 394 ~~~p~~~~~~~~L~~L~L~~n~-l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L-~~n~~ 464 (968)
T PLN00113 394 GEIPKSLGACRSLRRVRLQDNS-FS-----GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL-ARNKF 464 (968)
T ss_pred ccCCHHHhCCCCCCEEECcCCE-ee-----eECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEEC-cCcee
Confidence 112335678999999999985 32 223345678999999999999655567777778999999999 88864
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=1.2e-18 Score=211.71 Aligned_cols=244 Identities=20% Similarity=0.189 Sum_probs=159.0
Q ss_pred CcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCcccccccCcCCcCCcccce
Q 035555 466 IHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPVGIRELIRLRRVRK 545 (767)
Q Consensus 466 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~ 545 (767)
.+|+.|++++|. +..+|..+..+++|++|+|++|..+..+| .+..+++|++|++.+|..+..+|..++.+++|+.|.+
T Consensus 611 ~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 611 ENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 455666666665 55666666667777777777766666666 3666777777777777666677777777777777765
Q ss_pred eEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCCcccc------------
Q 035555 546 FVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPKNWIM------------ 613 (767)
Q Consensus 546 ~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~------------ 613 (767)
..+.... .++.-.++++|+.|.++++..+..... ...+|+.|+++.|....+|..+.
T Consensus 689 ~~c~~L~----~Lp~~i~l~sL~~L~Lsgc~~L~~~p~-------~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~ 757 (1153)
T PLN03210 689 SRCENLE----ILPTGINLKSLYRLNLSGCSRLKSFPD-------ISTNISWLDLDETAIEEFPSNLRLENLDELILCEM 757 (1153)
T ss_pred CCCCCcC----ccCCcCCCCCCCEEeCCCCCCcccccc-------ccCCcCeeecCCCcccccccccccccccccccccc
Confidence 4432211 111112456666676666544332211 12456666776666555554321
Q ss_pred ------------------CCCCccEEEEeccCCCCCCCC-CCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCC
Q 035555 614 ------------------SLTNLRYLSLSLFKNCEQLLP-LGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAF 674 (767)
Q Consensus 614 ------------------~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 674 (767)
.+++|+.|+|++|.....+|. ++++++|+.|+|++|..++.+|.. ..+
T Consensus 758 ~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~-------------~~L 824 (1153)
T PLN03210 758 KSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG-------------INL 824 (1153)
T ss_pred chhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC-------------CCc
Confidence 124566777776666666664 677778888888877777666542 156
Q ss_pred cccceeeccCccccccCccCCccccccccCcccceEeeccCccccCCCcCCCCCCCCcEEEecCCCchhHHh
Q 035555 675 PKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGCPIFRER 746 (767)
Q Consensus 675 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c~~l~~~ 746 (767)
++|+.|+|++|..+..++. ..++|+.|+++++ .++.+|..+..+++|+.|++ .+|++++..
T Consensus 825 ~sL~~L~Ls~c~~L~~~p~---------~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L-~~C~~L~~l 885 (1153)
T PLN03210 825 ESLESLDLSGCSRLRTFPD---------ISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDM-NGCNNLQRV 885 (1153)
T ss_pred cccCEEECCCCCccccccc---------cccccCEeECCCC-CCccChHHHhcCCCCCEEEC-CCCCCcCcc
Confidence 7888888888876655442 3467888888887 78889988889999999999 999988764
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=1.1e-20 Score=195.81 Aligned_cols=270 Identities=22% Similarity=0.244 Sum_probs=168.4
Q ss_pred ccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcc-cccCcCCcEeeCCCCCCcccccccCc
Q 035555 457 EIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQG-IGKLRKLMYLDNDYTNSLRYLPVGIR 535 (767)
Q Consensus 457 ~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~ 535 (767)
.+|..+-.|..|..||||.|. +++.|..+..-+++-.|+||+|+ ++.+|.. +-+++.|-+||+++| .+..+|+.+.
T Consensus 94 GiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~R 170 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIR 170 (1255)
T ss_pred CCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHH
Confidence 466777777777777777777 77777777777777777777766 6667754 456777777777766 6677777777
Q ss_pred CCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCCccccCC
Q 035555 536 ELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPKNWIMSL 615 (767)
Q Consensus 536 ~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l 615 (767)
.|.+|++|.+..+... -+.+.+|+.++.|..|.+++-+. .....+..+..+.+|..++++.|+....|+-+..+
T Consensus 171 RL~~LqtL~Ls~NPL~---hfQLrQLPsmtsL~vLhms~TqR---Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l 244 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLN---HFQLRQLPSMTSLSVLHMSNTQR---TLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKL 244 (1255)
T ss_pred HHhhhhhhhcCCChhh---HHHHhcCccchhhhhhhcccccc---hhhcCCCchhhhhhhhhccccccCCCcchHHHhhh
Confidence 7777777765544333 34445555555555565554221 11122334555667777777777776777766677
Q ss_pred CCccEEEEeccCCCCCCC-CCCCCCCCCeeeecCCCCceEecccccCCCC-------------CCCCccccCCcccceee
Q 035555 616 TNLRYLSLSLFKNCEQLL-PLGKLQSLEYLQIGGMHGVKRVGNEFLGVES-------------DTNGSSVIAFPKLRELK 681 (767)
Q Consensus 616 ~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~-------------~~~~~~~~~~~~L~~L~ 681 (767)
++|++|+|++|. ++.+. ..+.-.+|++|+++.|. ++.+|...+.... ...++.++.+.+|+.+.
T Consensus 245 ~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~ 322 (1255)
T KOG0444|consen 245 RNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFH 322 (1255)
T ss_pred hhhheeccCcCc-eeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHH
Confidence 777777777663 22222 12233445555555544 4444432221000 00022345666677777
Q ss_pred ccCccccccCccCCccccccccCcccceEeeccCccccCCCcCCCCCCCCcEEEecCCCchhHHh
Q 035555 682 FSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGCPIFRER 746 (767)
Q Consensus 682 L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c~~l~~~ 746 (767)
..+| +|+-.+. .++.++.|+.|.|+.| .|.++|+.+.-++-|+.|++ ...|+|.--
T Consensus 323 aanN-~LElVPE------glcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDl-reNpnLVMP 378 (1255)
T KOG0444|consen 323 AANN-KLELVPE------GLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDL-RENPNLVMP 378 (1255)
T ss_pred hhcc-ccccCch------hhhhhHHHHHhccccc-ceeechhhhhhcCCcceeec-cCCcCccCC
Confidence 7665 4544443 4678899999999876 78889999999999999999 899987543
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.75 E-value=2.3e-19 Score=185.04 Aligned_cols=271 Identities=21% Similarity=0.236 Sum_probs=188.1
Q ss_pred cCceeeeeccC--CCcccc-cccccCCcccEEeecCCccccccc-hhhcCCCCCcEEEccCCccccccCc-ccccCcCCc
Q 035555 443 LIKCRRWRCDN--YIKEIP-TNIEKLIHLKYLNLSSQKKIKRLP-ETLCELYNLECLAISFCTNLRQLPQ-GIGKLRKLM 517 (767)
Q Consensus 443 ~~~~L~~l~l~--~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~ 517 (767)
.++.||.||++ .+.++| .+|..=.++++|+|++|. |+.+. ..|.++.+|-+|.|+.|. +..+|. .|++|++|+
T Consensus 147 ~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~ 224 (873)
T KOG4194|consen 147 ALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLE 224 (873)
T ss_pred hHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCc-ccccCHHHhhhcchhh
Confidence 56789999998 577777 457777899999999999 88775 568889999999999998 888887 567799999
Q ss_pred EeeCCCCCCcccc-cccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcC
Q 035555 518 YLDNDYTNSLRYL-PVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLF 596 (767)
Q Consensus 518 ~L~l~~~~~l~~l-p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~ 596 (767)
.|++..| .+..+ .-.|..|.+|+.|.+-.++......+.+-.+. +++.|++.. +.......+.+.+++.|+
T Consensus 225 ~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~---kme~l~L~~----N~l~~vn~g~lfgLt~L~ 296 (873)
T KOG4194|consen 225 SLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLE---KMEHLNLET----NRLQAVNEGWLFGLTSLE 296 (873)
T ss_pred hhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeec---ccceeeccc----chhhhhhcccccccchhh
Confidence 9999988 55544 34578899999998887777665555444444 344444443 233444457788899999
Q ss_pred ceEEEecCCccC-CccccCCCCccEEEEeccCCCCCCCC--CCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccC
Q 035555 597 DLELRFDCNVIP-KNWIMSLTNLRYLSLSLFKNCEQLLP--LGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIA 673 (767)
Q Consensus 597 ~L~l~~~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~ 673 (767)
.|++++|.+..+ ++....+++|+.|+|++| .++.+++ +..|..|+.|+|++|+ +..+-... +.+
T Consensus 297 ~L~lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~a-----------f~~ 363 (873)
T KOG4194|consen 297 QLDLSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGA-----------FVG 363 (873)
T ss_pred hhccchhhhheeecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccccc-hHHHHhhH-----------HHH
Confidence 999999987533 444456788999999876 5565654 6667778888888776 44443321 235
Q ss_pred CcccceeeccCccccccCccCCccccccccCcccceEeeccCccccCCC-cCCCCCCCCcEEEecCCCc
Q 035555 674 FPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALP-DLLLQKTTLQKLHIWGGCP 741 (767)
Q Consensus 674 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~sL~~L~l~~~c~ 741 (767)
+.+|++|+|.+|. + +|.+.+ ..+.+..+|+|+.|.+.+| +++.+| ..+..+.+|++|++ ++.+
T Consensus 364 lssL~~LdLr~N~-l-s~~IED-aa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL-~~Na 427 (873)
T KOG4194|consen 364 LSSLHKLDLRSNE-L-SWCIED-AAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDL-GDNA 427 (873)
T ss_pred hhhhhhhcCcCCe-E-EEEEec-chhhhccchhhhheeecCc-eeeecchhhhccCcccceecC-CCCc
Confidence 6677777777663 2 222211 1112445777777777776 677776 34555677777777 5554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.70 E-value=9.2e-19 Score=181.69 Aligned_cols=263 Identities=24% Similarity=0.229 Sum_probs=166.2
Q ss_pred cCceeeeeccC--CCcccccccccCCcccEEeecCCccccccchh-hcCCCCCcEEEccCCccccccCcccccCcCCcEe
Q 035555 443 LIKCRRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPET-LCELYNLECLAISFCTNLRQLPQGIGKLRKLMYL 519 (767)
Q Consensus 443 ~~~~L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L 519 (767)
.+.-|.+||++ .+.+.|..+..-+++-+|+||+|. |..+|.. +-+|..|-+||||+|. ++.+|+.+..+.+|++|
T Consensus 101 ~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTL 178 (1255)
T ss_pred ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhh
Confidence 45667777777 466777777777777777777777 7777755 3367777777777777 77777777777777777
Q ss_pred eCCCCCC----c---------------------ccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeC
Q 035555 520 DNDYTNS----L---------------------RYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHG 574 (767)
Q Consensus 520 ~l~~~~~----l---------------------~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~ 574 (767)
.+++|.. + ..+|.++..|.+|..+++..+.... .+..+-++++|+.|++++
T Consensus 179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~----vPecly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI----VPECLYKLRNLRRLNLSG 254 (1255)
T ss_pred hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc----chHHHhhhhhhheeccCc
Confidence 7777621 1 1222222222222222222211111 122233333344443333
Q ss_pred CCCCCChhhhHHhhccCCCCcCceEEEecCCccCCccccCCCCccEEEEeccC-CCCCCCC-CCCCCCCCeeeecCCCCc
Q 035555 575 LGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPKNWIMSLTNLRYLSLSLFK-NCEQLLP-LGKLQSLEYLQIGGMHGV 652 (767)
Q Consensus 575 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~-~~~~l~~-l~~l~~L~~L~L~~~~~l 652 (767)
.+ ++ ..........+|++|+++.|+.+.+|+.+..++.|+.|.+.+|+ ..+.+|+ +|.+.+|+.++.++|. +
T Consensus 255 N~-it----eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-L 328 (1255)
T KOG0444|consen 255 NK-IT----ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-L 328 (1255)
T ss_pred Cc-ee----eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-c
Confidence 11 00 00112223456677777777777888888888888888887665 2345664 7888888888887765 7
Q ss_pred eEecccccCCCCCCCCccccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCccccCCCcCCCCCCCCc
Q 035555 653 KRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQ 732 (767)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~ 732 (767)
+-+|...+ .|++|+.|.|+.|. |-. .|..+.-+|-|+.|++..||+|..-|.--..-++|+
T Consensus 329 ElVPEglc------------RC~kL~kL~L~~Nr-LiT------LPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~le 389 (1255)
T KOG0444|consen 329 ELVPEGLC------------RCVKLQKLKLDHNR-LIT------LPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLE 389 (1255)
T ss_pred ccCchhhh------------hhHHHHHhcccccc-eee------chhhhhhcCCcceeeccCCcCccCCCCcchhhhcce
Confidence 76666544 88999999999884 433 334577899999999999999987774433346777
Q ss_pred EEEe
Q 035555 733 KLHI 736 (767)
Q Consensus 733 ~L~l 736 (767)
.-+|
T Consensus 390 fYNI 393 (1255)
T KOG0444|consen 390 FYNI 393 (1255)
T ss_pred eeec
Confidence 7776
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.64 E-value=3.4e-18 Score=169.10 Aligned_cols=193 Identities=24% Similarity=0.259 Sum_probs=134.9
Q ss_pred CceeeeeccC--CCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeC
Q 035555 444 IKCRRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDN 521 (767)
Q Consensus 444 ~~~L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l 521 (767)
...|+.++++ .+.++|++++.+..|..|+..+|. +..+|+.++++.+|..|++.+|. +..+|+..-.|+.|++||+
T Consensus 113 ~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~ 190 (565)
T KOG0472|consen 113 LISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDC 190 (565)
T ss_pred hhhhhhhhccccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhccc
Confidence 3445555555 456778888888888888888887 88888888888888888888877 7777776666888888888
Q ss_pred CCCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEE
Q 035555 522 DYTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELR 601 (767)
Q Consensus 522 ~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 601 (767)
..| .++.+|+.++.+.+|..|++..+... .+++++.+..|..+.+.. +.......+.++++.+|..|++.
T Consensus 191 ~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~-----~lPef~gcs~L~Elh~g~----N~i~~lpae~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 191 NSN-LLETLPPELGGLESLELLYLRRNKIR-----FLPEFPGCSLLKELHVGE----NQIEMLPAEHLKHLNSLLVLDLR 260 (565)
T ss_pred chh-hhhcCChhhcchhhhHHHHhhhcccc-----cCCCCCccHHHHHHHhcc----cHHHhhHHHHhcccccceeeecc
Confidence 777 77888888888888877766555443 233555555555544443 22222223445577788888888
Q ss_pred ecCCccCCccccCCCCccEEEEeccCCCCCCCC-CCCCCCCCeeeecCCC
Q 035555 602 FDCNVIPKNWIMSLTNLRYLSLSLFKNCEQLLP-LGKLQSLEYLQIGGMH 650 (767)
Q Consensus 602 ~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~ 650 (767)
.|.....|+.+.-+.+|.+|++++| .+..+|. +|++ .|+.|-+.||+
T Consensus 261 dNklke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 261 DNKLKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred ccccccCchHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCc
Confidence 8888888887777788888888865 5555553 7777 77777777776
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.63 E-value=5.8e-17 Score=167.60 Aligned_cols=274 Identities=18% Similarity=0.168 Sum_probs=163.8
Q ss_pred ccCceeeeeccC--CCcccccccccCCcccEEeecCCccccccc-hhhcCCCCCcEEEccCCccccccCc-ccccCcCCc
Q 035555 442 KLIKCRRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLP-ETLCELYNLECLAISFCTNLRQLPQ-GIGKLRKLM 517 (767)
Q Consensus 442 ~~~~~L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~ 517 (767)
..+++|+.++++ .++.+|...+...||+.|+|.+|. |..+. +.+.-++.|++||||.|. +..+|. .+..-.+++
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~ 176 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIK 176 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeeccc-cccccHHHHHhHhhhhhhhhhhch-hhcccCCCCCCCCCce
Confidence 456677777666 566777776677778888887777 65543 556677777777777776 655554 344445677
Q ss_pred EeeCCCCCCccccc-ccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeC-------------CCCC-----
Q 035555 518 YLDNDYTNSLRYLP-VGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHG-------------LGDV----- 578 (767)
Q Consensus 518 ~L~l~~~~~l~~lp-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~-------------l~~~----- 578 (767)
+|++++| .++.+. ..|..|.+|-+|.+..+.... -....++.|++|+.|.+.. ++++
T Consensus 177 ~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNritt---Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 177 KLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITT---LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred EEeeccc-cccccccccccccchheeeecccCcccc---cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 7777776 444443 235555555555554444432 2233344444444433322 1110
Q ss_pred --CChhhhHHhhccCCCCcCceEEEecCCccC-CccccCCCCccEEEEeccCCCC-CCCCCCCCCCCCeeeecCCCCceE
Q 035555 579 --SDVGEARRAELEKKKNLFDLELRFDCNVIP-KNWIMSLTNLRYLSLSLFKNCE-QLLPLGKLQSLEYLQIGGMHGVKR 654 (767)
Q Consensus 579 --~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~L~~~~~~~-~l~~l~~l~~L~~L~L~~~~~l~~ 654 (767)
+++.....+.|..+.++++|+|..|..... -.|+..++.|+.|+|+.|.... +.......++|+.|+|++|. ++.
T Consensus 253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~-i~~ 331 (873)
T KOG4194|consen 253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR-ITR 331 (873)
T ss_pred hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc-ccc
Confidence 112222335566777777777777776543 4577777778888887664222 22335567778888887766 555
Q ss_pred ecccccCCCCCCCCccccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCccccCC---CcCCCCCCCC
Q 035555 655 VGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKAL---PDLLLQKTTL 731 (767)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l---p~~~~~l~sL 731 (767)
++... +..+..|++|.|++|. ++.+ .++.+..+.+|+.|+|++|..--.+ ...+..+++|
T Consensus 332 l~~~s-----------f~~L~~Le~LnLs~Ns-i~~l-----~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~L 394 (873)
T KOG4194|consen 332 LDEGS-----------FRVLSQLEELNLSHNS-IDHL-----AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSL 394 (873)
T ss_pred CChhH-----------HHHHHHhhhhcccccc-hHHH-----HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhh
Confidence 55432 2356678888888773 3332 3445667888999988887421122 1234558899
Q ss_pred cEEEecCCC
Q 035555 732 QKLHIWGGC 740 (767)
Q Consensus 732 ~~L~l~~~c 740 (767)
+.|++ .+.
T Consensus 395 rkL~l-~gN 402 (873)
T KOG4194|consen 395 RKLRL-TGN 402 (873)
T ss_pred hheee-cCc
Confidence 99998 655
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.62 E-value=2.7e-18 Score=169.85 Aligned_cols=243 Identities=25% Similarity=0.247 Sum_probs=175.9
Q ss_pred ccCceeeeeccC--CCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEe
Q 035555 442 KLIKCRRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYL 519 (767)
Q Consensus 442 ~~~~~L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L 519 (767)
+.+.+|.+++++ .+..+|.+++++..+..|+.+.|+ +..+|+.++.+.+|..|+.+.|. +.++|++++.+..|..+
T Consensus 65 ~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLDCSSNE-LKELPDSIGRLLDLEDL 142 (565)
T ss_pred hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhhccccc-eeecCchHHHHhhhhhh
Confidence 456666666666 355667777777777777777777 67777777777777777777766 66677777777777777
Q ss_pred eCCCCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceE
Q 035555 520 DNDYTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLE 599 (767)
Q Consensus 520 ~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 599 (767)
+..+| .+..+|.+++.+.+|..|.+..+... +..+...+++.|++|+
T Consensus 143 ~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l~--------------------------------~l~~~~i~m~~L~~ld 189 (565)
T KOG0472|consen 143 DATNN-QISSLPEDMVNLSKLSKLDLEGNKLK--------------------------------ALPENHIAMKRLKHLD 189 (565)
T ss_pred hcccc-ccccCchHHHHHHHHHHhhccccchh--------------------------------hCCHHHHHHHHHHhcc
Confidence 76666 56667766666655555533221111 1122333467788888
Q ss_pred EEecCCccCCccccCCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccce
Q 035555 600 LRFDCNVIPKNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRE 679 (767)
Q Consensus 600 l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 679 (767)
...|-...+|+.++.+.+|..|+|..| .+..+|.++.++.|+.|+++.|. ++.++.+.. ..+++|..
T Consensus 190 ~~~N~L~tlP~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N~-i~~lpae~~-----------~~L~~l~v 256 (565)
T KOG0472|consen 190 CNSNLLETLPPELGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGENQ-IEMLPAEHL-----------KHLNSLLV 256 (565)
T ss_pred cchhhhhcCChhhcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcccH-HHhhHHHHh-----------ccccccee
Confidence 888877788888889999999999876 66778889999999999998776 677766543 27888999
Q ss_pred eeccCccccccCccCCccccccccCcccceEeeccCccccCCCcCCCCCCCCcEEEecCCCch
Q 035555 680 LKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGCPI 742 (767)
Q Consensus 680 L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c~~ 742 (767)
|+|..| ++++.+. ++..+.+|.+|++++| .+..+|-.++++ .|+.|.+ .+.|.
T Consensus 257 LDLRdN-klke~Pd------e~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~l-eGNPl 309 (565)
T KOG0472|consen 257 LDLRDN-KLKEVPD------EICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLAL-EGNPL 309 (565)
T ss_pred eecccc-ccccCch------HHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhh-cCCch
Confidence 999988 6777664 3667888999999987 788899888888 8899998 88885
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.51 E-value=2e-15 Score=164.84 Aligned_cols=147 Identities=26% Similarity=0.346 Sum_probs=96.0
Q ss_pred CCcCceEEEecCCccCCccccCCCCccEEEEeccCCCC----------------------CCCC-CCCCCCCCeeeecCC
Q 035555 593 KNLFDLELRFDCNVIPKNWIMSLTNLRYLSLSLFKNCE----------------------QLLP-LGKLQSLEYLQIGGM 649 (767)
Q Consensus 593 ~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~----------------------~l~~-l~~l~~L~~L~L~~~ 649 (767)
.+|+.++++.|....+|+|+..+.+|+.|....|.... .+|+ +..+.+|++|+|..|
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence 47888888888888999999999999999987764321 2333 455889999999887
Q ss_pred CCceEecccccCCCCC-------------------C-------------C------CccccCCcccceeeccCccccccC
Q 035555 650 HGVKRVGNEFLGVESD-------------------T-------------N------GSSVIAFPKLRELKFSYMEELEEW 691 (767)
Q Consensus 650 ~~l~~~~~~~~~~~~~-------------------~-------------~------~~~~~~~~~L~~L~L~~~~~l~~~ 691 (767)
. +..++..+...... . | ...+.++++|+.|+|++| .|.++
T Consensus 321 ~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~f 398 (1081)
T KOG0618|consen 321 N-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSF 398 (1081)
T ss_pred c-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccC
Confidence 6 55555433221110 0 0 122467889999999988 45555
Q ss_pred ccCCccccccccCcccceEeeccCccccCCCcC----------------------CCCCCCCcEEEecCCCchhHHhhcc
Q 035555 692 DFGTATKGEIIIMPRLSCLIIFGCFKLKALPDL----------------------LLQKTTLQKLHIWGGCPIFRERYRE 749 (767)
Q Consensus 692 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~----------------------~~~l~sL~~L~l~~~c~~l~~~~~~ 749 (767)
+.. .+.+++.|+.|.++|| +|+.+|.. +..++.|+.+++ .|.+|++...+
T Consensus 399 pas-----~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDl--S~N~L~~~~l~ 470 (1081)
T KOG0618|consen 399 PAS-----KLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDL--SCNNLSEVTLP 470 (1081)
T ss_pred CHH-----HHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEec--ccchhhhhhhh
Confidence 533 3456777777777776 56655432 334566777777 56666665444
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.45 E-value=4.4e-13 Score=151.39 Aligned_cols=232 Identities=19% Similarity=0.104 Sum_probs=143.9
Q ss_pred eeeeeccC--CCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCC
Q 035555 446 CRRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDY 523 (767)
Q Consensus 446 ~L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~ 523 (767)
.|+.|++. .++.+|.. +++|++|++++|. ++.+|.. .++|+.|++++|. +..+|.. ..+|..|++++
T Consensus 223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~ 291 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFG 291 (788)
T ss_pred CCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---ccccceeeccCCc-hhhhhhc---hhhcCEEECcC
Confidence 34444444 45555542 4667777777776 6666642 3567777777776 5666642 24566777777
Q ss_pred CCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEec
Q 035555 524 TNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFD 603 (767)
Q Consensus 524 ~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 603 (767)
| .+..+|.. +++|+.|++..+.... +..+ ..+|..|.+.+.. +..+. . ...+|+.|+|++|
T Consensus 292 N-~Lt~LP~~---p~~L~~LdLS~N~L~~-----Lp~l--p~~L~~L~Ls~N~-L~~LP-----~--lp~~Lq~LdLS~N 352 (788)
T PRK15387 292 N-QLTSLPVL---PPGLQELSVSDNQLAS-----LPAL--PSELCKLWAYNNQ-LTSLP-----T--LPSGLQELSVSDN 352 (788)
T ss_pred C-cccccccc---ccccceeECCCCcccc-----CCCC--cccccccccccCc-ccccc-----c--cccccceEecCCC
Confidence 7 56666643 3456666554433322 1111 1234444443311 11110 0 1146888888888
Q ss_pred CCccCCccccCCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeecc
Q 035555 604 CNVIPKNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFS 683 (767)
Q Consensus 604 ~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 683 (767)
.+..+|.. ..+|+.|++++| .+..+|.+ .++|+.|++++|. ++.++. ..++|+.|+++
T Consensus 353 ~Ls~LP~l---p~~L~~L~Ls~N-~L~~LP~l--~~~L~~LdLs~N~-Lt~LP~---------------l~s~L~~LdLS 410 (788)
T PRK15387 353 QLASLPTL---PSELYKLWAYNN-RLTSLPAL--PSGLKELIVSGNR-LTSLPV---------------LPSELKELMVS 410 (788)
T ss_pred ccCCCCCC---Ccccceehhhcc-ccccCccc--ccccceEEecCCc-ccCCCC---------------cccCCCEEEcc
Confidence 88777753 356778888866 45556653 4678889998876 444432 23579999999
Q ss_pred CccccccCccCCccccccccCcccceEeeccCccccCCCcCCCCCCCCcEEEecCCCc
Q 035555 684 YMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGCP 741 (767)
Q Consensus 684 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c~ 741 (767)
+| .++.++. .+.+|+.|++++| +++.+|..+..+++|+.|++ .++|
T Consensus 411 ~N-~LssIP~---------l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdL-s~N~ 456 (788)
T PRK15387 411 GN-RLTSLPM---------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNL-EGNP 456 (788)
T ss_pred CC-cCCCCCc---------chhhhhhhhhccC-cccccChHHhhccCCCeEEC-CCCC
Confidence 98 4655442 2457889999998 78899988888999999999 7765
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.43 E-value=2.9e-15 Score=131.41 Aligned_cols=163 Identities=26% Similarity=0.259 Sum_probs=129.5
Q ss_pred ccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCcccccccCcCCcCC
Q 035555 461 NIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPVGIRELIRL 540 (767)
Q Consensus 461 ~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L 540 (767)
.+-++.+++.|.||+|+ ++.+|+.+..+.+|+.|++++|. ++++|..++.|++|++|++.-| .+..+|.++|.++.|
T Consensus 28 gLf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPAL 104 (264)
T ss_pred cccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchh-hhhcCccccCCCchh
Confidence 34567888999999999 89999999999999999999988 8999999999999999999877 788899999999999
Q ss_pred cccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCCccccCCCCccE
Q 035555 541 RRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPKNWIMSLTNLRY 620 (767)
Q Consensus 541 ~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~ 620 (767)
+.|++..+..+. ...++++..++.|+.|+|+.|.+..+|.-++.+++|+.
T Consensus 105 evldltynnl~e------------------------------~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqi 154 (264)
T KOG0617|consen 105 EVLDLTYNNLNE------------------------------NSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQI 154 (264)
T ss_pred hhhhcccccccc------------------------------ccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeE
Confidence 888765433321 11224555667777888888888888888888888888
Q ss_pred EEEeccCCCCCCC-CCCCCCCCCeeeecCCCCceEeccc
Q 035555 621 LSLSLFKNCEQLL-PLGKLQSLEYLQIGGMHGVKRVGNE 658 (767)
Q Consensus 621 L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~ 658 (767)
|.+.+|..+ ++| .++.+..|+.|++.+|. ++.+|.+
T Consensus 155 l~lrdndll-~lpkeig~lt~lrelhiqgnr-l~vlppe 191 (264)
T KOG0617|consen 155 LSLRDNDLL-SLPKEIGDLTRLRELHIQGNR-LTVLPPE 191 (264)
T ss_pred EeeccCchh-hCcHHHHHHHHHHHHhcccce-eeecChh
Confidence 888877443 444 47888888888888877 6666654
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.42 E-value=3.1e-13 Score=153.65 Aligned_cols=235 Identities=17% Similarity=0.169 Sum_probs=153.6
Q ss_pred CCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCccccccc
Q 035555 454 YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPVG 533 (767)
Q Consensus 454 ~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~ 533 (767)
.++.+|..+. ++|+.|+|++|. ++.+|..+. .+|++|++++|. +..+|..+. .+|+.|++++| .+..+|..
T Consensus 189 ~LtsLP~~Ip--~~L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~ 259 (754)
T PRK15370 189 GLTTIPACIP--EQITTLILDNNE-LKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSIN-RITELPER 259 (754)
T ss_pred CcCcCCcccc--cCCcEEEecCCC-CCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCC-ccCcCChh
Confidence 4556676554 478888888887 777886654 478888888876 777776543 46888888887 56677765
Q ss_pred CcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCCcccc
Q 035555 534 IRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPKNWIM 613 (767)
Q Consensus 534 ~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~ 613 (767)
+. .+|+.|++..+..... ...+ .++|+.|.+++. ++.... ..+ ..+|+.|++++|....+|..+.
T Consensus 260 l~--s~L~~L~Ls~N~L~~L----P~~l--~~sL~~L~Ls~N-~Lt~LP----~~l--p~sL~~L~Ls~N~Lt~LP~~l~ 324 (754)
T PRK15370 260 LP--SALQSLDLFHNKISCL----PENL--PEELRYLSVYDN-SIRTLP----AHL--PSGITHLNVQSNSLTALPETLP 324 (754)
T ss_pred Hh--CCCCEEECcCCccCcc----cccc--CCCCcEEECCCC-ccccCc----ccc--hhhHHHHHhcCCccccCCcccc
Confidence 53 4566665543333221 1111 135666666653 122111 111 1367888899888877776443
Q ss_pred CCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCcc
Q 035555 614 SLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDF 693 (767)
Q Consensus 614 ~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~ 693 (767)
++|+.|++++|. ++.+|. .-.++|+.|++++|. ++.++.. -.++|+.|+|++| .+..++.
T Consensus 325 --~sL~~L~Ls~N~-Lt~LP~-~l~~sL~~L~Ls~N~-L~~LP~~--------------lp~~L~~LdLs~N-~Lt~LP~ 384 (754)
T PRK15370 325 --PGLKTLEAGENA-LTSLPA-SLPPELQVLDVSKNQ-ITVLPET--------------LPPTITTLDVSRN-ALTNLPE 384 (754)
T ss_pred --ccceeccccCCc-cccCCh-hhcCcccEEECCCCC-CCcCChh--------------hcCCcCEEECCCC-cCCCCCH
Confidence 689999999874 455664 224789999999886 5554431 2357999999998 5665543
Q ss_pred CCccccccccCcccceEeeccCccccCCCcCCC----CCCCCcEEEecCCCch
Q 035555 694 GTATKGEIIIMPRLSCLIIFGCFKLKALPDLLL----QKTTLQKLHIWGGCPI 742 (767)
Q Consensus 694 ~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~----~l~sL~~L~l~~~c~~ 742 (767)
. ..++|+.|++++| ++..+|..+. .++.+..|++ .+.|-
T Consensus 385 ~--------l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L-~~Npl 427 (754)
T PRK15370 385 N--------LPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIV-EYNPF 427 (754)
T ss_pred h--------HHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEe-eCCCc
Confidence 2 2247999999998 6778876443 3478889999 77764
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.40 E-value=7.4e-15 Score=160.42 Aligned_cols=227 Identities=24% Similarity=0.264 Sum_probs=139.4
Q ss_pred CCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCcccccccCcCCcCCcccc
Q 035555 465 LIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPVGIRELIRLRRVR 544 (767)
Q Consensus 465 l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~ 544 (767)
-.+|+|++++.+. +..+|++++.|.+|+.|+..+|. +..+|..+..+.+|+.|.+.+| .+..+|.....+++|++|.
T Consensus 240 p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 240 PLNLQYLDISHNN-LSNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLD 316 (1081)
T ss_pred cccceeeecchhh-hhcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeee
Confidence 3578888888888 88888888888899998888887 6888888888888888888887 7888888888888888887
Q ss_pred eeEecCccCCCCChhhhhcCCC-CCCeeeeC-----CCCC---------------CChhhhHHhhccCCCCcCceEEEec
Q 035555 545 KFVVGGGYDRACSLESLKRLIL-LRECRIHG-----LGDV---------------SDVGEARRAELEKKKNLFDLELRFD 603 (767)
Q Consensus 545 ~~~~~~~~~~~~~~~~l~~l~~-L~~L~i~~-----l~~~---------------~~~~~~~~~~l~~~~~L~~L~l~~~ 603 (767)
+..+....... ..+..+.. |+.+..+. +... +...+.....+.++.+|+.|+|++|
T Consensus 317 L~~N~L~~lp~---~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN 393 (1081)
T KOG0618|consen 317 LQSNNLPSLPD---NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN 393 (1081)
T ss_pred ehhccccccch---HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc
Confidence 77665543222 11111111 22221111 1100 1122333445556666677777766
Q ss_pred CCccCCcc-ccCCCCccEEEEeccCCCCCCCC-CCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceee
Q 035555 604 CNVIPKNW-IMSLTNLRYLSLSLFKNCEQLLP-LGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELK 681 (767)
Q Consensus 604 ~~~~~p~~-~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 681 (767)
....+|.. +.++..|+.|+|++| .++.+|. +..++.|++|...+|. +..+| + +..+|.|+.+|
T Consensus 394 rL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~-l~~fP-e------------~~~l~qL~~lD 458 (1081)
T KOG0618|consen 394 RLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQ-LLSFP-E------------LAQLPQLKVLD 458 (1081)
T ss_pred ccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCc-eeech-h------------hhhcCcceEEe
Confidence 66655543 335666666666665 3444443 5566666666665554 44444 2 12566777777
Q ss_pred ccCccccccCccCCccccccccCcccceEeeccCccc
Q 035555 682 FSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKL 718 (767)
Q Consensus 682 L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 718 (767)
++.| +|+........| -|+|++|+++||+.+
T Consensus 459 lS~N-~L~~~~l~~~~p-----~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 459 LSCN-NLSEVTLPEALP-----SPNLKYLDLSGNTRL 489 (1081)
T ss_pred cccc-hhhhhhhhhhCC-----CcccceeeccCCccc
Confidence 7665 555544321111 167777777777543
No 18
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.36 E-value=5.9e-11 Score=143.78 Aligned_cols=292 Identities=15% Similarity=0.192 Sum_probs=173.1
Q ss_pred CCCCCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccc-h-h---hhhh-hHHHHHHHHH
Q 035555 92 SSIDESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDD-V-K---KILR-KEYGIARAII 165 (767)
Q Consensus 92 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~-~-~---~~F~-~~~~i~~~i~ 165 (767)
+|.....+|-|+.-.+++.+. ...+++.|+|++|.||||++.++.+... + . ...+ ....+...++
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~---------~~~~~~~v~apaG~GKTtl~~~~~~~~~~~~w~~l~~~d~~~~~f~~~l~ 79 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA---------NNYRLVLVTSPAGYGKTTLISQWAAGKNNLGWYSLDESDNQPERFASYLI 79 (903)
T ss_pred CCCCccccCcchHHHHHHhcc---------cCCCeEEEECCCCCCHHHHHHHHHHhCCCeEEEecCcccCCHHHHHHHHH
Confidence 444556788888776666431 2567999999999999999999876321 0 0 0011 1233444444
Q ss_pred HHhhCCCCC-------------ccchHHHHHHHHHhcC--CCeEEEEEeCCCCcChhhHH-HHHHhhhcCCCCcEEEEEc
Q 035555 166 EALTYSSSN-------------FVEFQSLMQHIQKHVA--GKKLLLVLDDVWNEDFYKWE-QFYNCLKTCLHGSKILITT 229 (767)
Q Consensus 166 ~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~-~l~~~l~~~~~gs~ilvTt 229 (767)
..+...... ..+...+...+...+. +.+++|||||+...+..... .+...++...++.++||||
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~s 159 (903)
T PRK04841 80 AALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLS 159 (903)
T ss_pred HHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEe
Confidence 444311110 0122223333333332 68999999999765544444 4444455555667888999
Q ss_pred Cchh-H--HhhhcCcceEecC----CCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHHhHHhcC
Q 035555 230 RKET-V--ARIMGSADIISVN----VLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIASLLRSK 302 (767)
Q Consensus 230 R~~~-v--~~~~~~~~~~~l~----~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~ 302 (767)
|... . ...........+. +|+.+|+.++|....... .. .+....|.+.|+|.|+++..++..++..
T Consensus 160 R~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~---~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~ 232 (903)
T PRK04841 160 RNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP---IE----AAESSRLCDDVEGWATALQLIALSARQN 232 (903)
T ss_pred CCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC---CC----HHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 9842 1 1111112344555 999999999998754221 11 2336789999999999999988777544
Q ss_pred CC-HHHHHHHHhhhcccchh-hhhhhhhhHHh-hcccCCHHHHHHHHHhccCCCCcccChHHHHHHHHHcCCccCCCCCc
Q 035555 303 NT-EKEWQNILESEIWEIEE-VEKNLLAPLLL-SYNELPSKVKQCFTYCAIFPKNSKIWKDKLIELWMAQGFLNNKRSKE 379 (767)
Q Consensus 303 ~~-~~~w~~~~~~~~~~~~~-~~~~i~~~l~~-sy~~L~~~~k~~f~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~ 379 (767)
.. .... . +.+.. ....+...+.- .++.||++.+..+...|+++ .++.+.+-.. ...
T Consensus 233 ~~~~~~~---~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l------~~~----- 291 (903)
T PRK04841 233 NSSLHDS---A----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRV------TGE----- 291 (903)
T ss_pred CCchhhh---h----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHH------cCC-----
Confidence 32 1110 0 11111 12234444433 37899999999999999986 3333322211 111
Q ss_pred HHHHHHHHHHHHHhcCCCcccccCCCCCEEEEEeChHHHHHHHHhh
Q 035555 380 MEEIGEEYFNILASRSFFQDFERGYDGKIYQCKVHDIVHDFAQFLC 425 (767)
Q Consensus 380 ~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~mHdlv~~~a~~~~ 425 (767)
+.+.+.+++|...+++.....+ .+ ..|++|++++++.....
T Consensus 292 --~~~~~~L~~l~~~~l~~~~~~~-~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 --ENGQMRLEELERQGLFIQRMDD-SG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred --CcHHHHHHHHHHCCCeeEeecC-CC--CEEehhHHHHHHHHHHH
Confidence 1246789999999987532111 11 24778999999987765
No 19
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.30 E-value=8.9e-10 Score=119.67 Aligned_cols=306 Identities=16% Similarity=0.144 Sum_probs=174.9
Q ss_pred CCCCCCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhh-hhh----------hHHH
Q 035555 91 ISSIDESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKK-ILR----------KEYG 159 (767)
Q Consensus 91 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~-~F~----------~~~~ 159 (767)
.+...+..++||++++++|...+...-. +.....+.|+|++|+|||++++.++++..... .+. ....
T Consensus 24 ~~~~~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~ 101 (394)
T PRK00411 24 EPDYVPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYA 101 (394)
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHH
Confidence 3334566899999999999999854321 12345678999999999999999988532111 111 1567
Q ss_pred HHHHHHHHhhCC-C-CCccchHHHHHHHHHhcC--CCeEEEEEeCCCCcC----hhhHHHHHHhhhcCCCCcE--EEEEc
Q 035555 160 IARAIIEALTYS-S-SNFVEFQSLMQHIQKHVA--GKKLLLVLDDVWNED----FYKWEQFYNCLKTCLHGSK--ILITT 229 (767)
Q Consensus 160 i~~~i~~~l~~~-~-~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~----~~~~~~l~~~l~~~~~gs~--ilvTt 229 (767)
++..+++++... . ......+++...+.+.+. ++..+||||+++.-. ...+..+...+.. .++++ +|.++
T Consensus 102 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~ 180 (394)
T PRK00411 102 IFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGIS 180 (394)
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEE
Confidence 778888888652 1 122345666677777665 456899999996532 1223333332222 22332 56665
Q ss_pred CchhHHhhhc-------CcceEecCCCChhHHHHHHHHhcCCC--CCCcchhhHHHHHHHHHhhcCCCcchHHHHHhHHh
Q 035555 230 RKETVARIMG-------SADIISVNVLSETECWLVFESLGFSG--KSMEERENLEKIGREIIRKCKGLPLVAKTIASLLR 300 (767)
Q Consensus 230 R~~~v~~~~~-------~~~~~~l~~L~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~ 300 (767)
.+..+..... ....+.+++++.++..+++..++... ........++.+++......|..+.|+.++-....
T Consensus 181 ~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~ 260 (394)
T PRK00411 181 SDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGL 260 (394)
T ss_pred CCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5543332211 13467899999999999998775221 11123334444455444445667777776643321
Q ss_pred -----cCC--CHHHHHHHHhhhcccchhhhhhhhhhHHhhcccCCHHHHHHHHHhccCCC--CcccChHHHHHH--HHH-
Q 035555 301 -----SKN--TEKEWQNILESEIWEIEEVEKNLLAPLLLSYNELPSKVKQCFTYCAIFPK--NSKIWKDKLIEL--WMA- 368 (767)
Q Consensus 301 -----~~~--~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~s~fp~--~~~i~~~~li~~--w~a- 368 (767)
... +.+....+.+... .....-.+..||.+.|..+..++...+ ...+....+... .++
T Consensus 261 ~a~~~~~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~ 330 (394)
T PRK00411 261 IAEREGSRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCE 330 (394)
T ss_pred HHHHcCCCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 111 4455544444320 122334678999988887766553321 123455544432 122
Q ss_pred -cCCccCCCCCcHHHHHHHHHHHHHhcCCCcccc--cCCCCCEEEEEeC
Q 035555 369 -QGFLNNKRSKEMEEIGEEYFNILASRSFFQDFE--RGYDGKIYQCKVH 414 (767)
Q Consensus 369 -~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~--~~~~~~~~~~~mH 414 (767)
.|.-. -......+|++.|...+++.... .+..|....++++
T Consensus 331 ~~~~~~-----~~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~ 374 (394)
T PRK00411 331 ELGYEP-----RTHTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLS 374 (394)
T ss_pred HcCCCc-----CcHHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEec
Confidence 12111 01234567999999999998643 2334555555554
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.28 E-value=2.6e-12 Score=148.53 Aligned_cols=269 Identities=21% Similarity=0.183 Sum_probs=170.4
Q ss_pred ccCceeeeeccC---CCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcE
Q 035555 442 KLIKCRRWRCDN---YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMY 518 (767)
Q Consensus 442 ~~~~~L~~l~l~---~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~ 518 (767)
+.++.||+||++ ....+|..+++|.+||||+++++. +..+|..+.+|..|.+|++..+..+..+|.....|.+|++
T Consensus 568 ~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV 646 (889)
T ss_pred hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence 679999999999 577899999999999999999999 9999999999999999999999877777766777999999
Q ss_pred eeCCCCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCce
Q 035555 519 LDNDYTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDL 598 (767)
Q Consensus 519 L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L 598 (767)
|.+.... ...-...++.+.+|++|..+...... ...+..+..+.+|..+.+.-... ........+.+..+.+|+.|
T Consensus 647 L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s--~~~~e~l~~~~~L~~~~~~l~~~-~~~~~~~~~~~~~l~~L~~L 722 (889)
T KOG4658|consen 647 LRLPRSA-LSNDKLLLKELENLEHLENLSITISS--VLLLEDLLGMTRLRSLLQSLSIE-GCSKRTLISSLGSLGNLEEL 722 (889)
T ss_pred EEeeccc-cccchhhHHhhhcccchhhheeecch--hHhHhhhhhhHHHHHHhHhhhhc-ccccceeecccccccCcceE
Confidence 9987652 12112234555666666555543332 12234444444444321111100 01112234567778888999
Q ss_pred EEEecCCccCC-cccc-----C-CCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccc
Q 035555 599 ELRFDCNVIPK-NWIM-----S-LTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSV 671 (767)
Q Consensus 599 ~l~~~~~~~~p-~~~~-----~-l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~ 671 (767)
.+..+.....+ .|.. . ++++..+.+.+|.....+......|+|+.|.+..|+.++.+.+......... ...
T Consensus 723 ~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~--~~i 800 (889)
T KOG4658|consen 723 SILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELK--ELI 800 (889)
T ss_pred EEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcc--cEE
Confidence 98887764222 1211 1 5567777777776666666666788899999988887666543322111100 001
Q ss_pred cCCccccee-eccCccccccCccCCccccccccCcccceEeeccCccccCCCc
Q 035555 672 IAFPKLREL-KFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPD 723 (767)
Q Consensus 672 ~~~~~L~~L-~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~ 723 (767)
..|+++..+ .+.+...+.++... -..+++|+.+.+..||+++.+|.
T Consensus 801 ~~f~~~~~l~~~~~l~~l~~i~~~------~l~~~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 801 LPFNKLEGLRMLCSLGGLPQLYWL------PLSFLKLEELIVEECPKLGKLPL 847 (889)
T ss_pred ecccccccceeeecCCCCceeEec------ccCccchhheehhcCcccccCcc
Confidence 234444444 24444433333221 11355688888888887776663
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.28 E-value=3.9e-13 Score=133.60 Aligned_cols=84 Identities=19% Similarity=0.249 Sum_probs=59.5
Q ss_pred CCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCccCCccccccccCcccceEeecc
Q 035555 635 LGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFG 714 (767)
Q Consensus 635 l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 714 (767)
+..+|+|+.|+|++|. ++.+....+ .+...|++|.|..| .++.+. .+.+..+..|++|+|++
T Consensus 270 f~~L~~L~~lnlsnN~-i~~i~~~aF-----------e~~a~l~eL~L~~N-~l~~v~-----~~~f~~ls~L~tL~L~~ 331 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNK-ITRIEDGAF-----------EGAAELQELYLTRN-KLEFVS-----SGMFQGLSGLKTLSLYD 331 (498)
T ss_pred HhhcccceEeccCCCc-cchhhhhhh-----------cchhhhhhhhcCcc-hHHHHH-----HHhhhccccceeeeecC
Confidence 7788999999998876 666654333 36677888888887 444433 23566788899999999
Q ss_pred CccccCCCcCCCCCCCCcEEEe
Q 035555 715 CFKLKALPDLLLQKTTLQKLHI 736 (767)
Q Consensus 715 c~~l~~lp~~~~~l~sL~~L~l 736 (767)
|.....-|..+..+.+|.+|.+
T Consensus 332 N~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 332 NQITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred CeeEEEecccccccceeeeeeh
Confidence 8433344666777888888887
No 22
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.26 E-value=2e-10 Score=120.65 Aligned_cols=266 Identities=18% Similarity=0.159 Sum_probs=148.7
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCC
Q 035555 95 DESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSN 174 (767)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~ 174 (767)
.-.+|+|+++.++.+..++..... .......+.|+|++|+|||++|+.+++... ..+.. .....
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l~--~~~~~-------------~~~~~ 86 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEMG--VNIRI-------------TSGPA 86 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHhC--CCeEE-------------Eeccc
Confidence 346799999999999888764321 123456788999999999999999988422 11111 00000
Q ss_pred ccchHHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhhcC-------------------CCCcEEEEEcCchhHH
Q 035555 175 FVEFQSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTC-------------------LHGSKILITTRKETVA 235 (767)
Q Consensus 175 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-------------------~~gs~ilvTtR~~~v~ 235 (767)
.....++...+.. + ++.-+|++|++........+.+...+... .+.+-|..||+...+.
T Consensus 87 ~~~~~~l~~~l~~-l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~ 164 (328)
T PRK00080 87 LEKPGDLAAILTN-L-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLT 164 (328)
T ss_pred ccChHHHHHHHHh-c-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCC
Confidence 0011122222211 2 23456777777543322222222222111 1234566677754433
Q ss_pred hhhc--CcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHHhHHhcCCCHHHHHHHHh
Q 035555 236 RIMG--SADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIASLLRSKNTEKEWQNILE 313 (767)
Q Consensus 236 ~~~~--~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~~ 313 (767)
..+. ....+.+++++.++..+++.+.+....... ..+.+..|++.|+|.|-.+..+...+. .|.....
T Consensus 165 ~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~----~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~ 234 (328)
T PRK00080 165 SPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEI----DEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKG 234 (328)
T ss_pred HHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcC
Confidence 2221 134689999999999999998865433222 234588899999999965554444331 2211111
Q ss_pred hhcccchhhhhhhhhhHHhhcccCCHHHHHHHH-HhccCCCCcccChHHHHHHHHHcCCccCCCCCcHHHHHHHHHH-HH
Q 035555 314 SEIWEIEEVEKNLLAPLLLSYNELPSKVKQCFT-YCAIFPKNSKIWKDKLIELWMAQGFLNNKRSKEMEEIGEEYFN-IL 391 (767)
Q Consensus 314 ~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~-~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~l~-~L 391 (767)
..... ...-......+...+..|++..+..+. ....|+.+ .++.+.+.... . ...+.+++.++ .|
T Consensus 235 ~~~I~-~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g-----~~~~~~~~~~e~~L 301 (328)
T PRK00080 235 DGVIT-KEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------G-----EERDTIEDVYEPYL 301 (328)
T ss_pred CCCCC-HHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------C-----CCcchHHHHhhHHH
Confidence 10000 111123345567778899988888775 66677655 46666554332 1 11234555666 89
Q ss_pred HhcCCCcccc
Q 035555 392 ASRSFFQDFE 401 (767)
Q Consensus 392 ~~~sll~~~~ 401 (767)
++.+|++...
T Consensus 302 i~~~li~~~~ 311 (328)
T PRK00080 302 IQQGFIQRTP 311 (328)
T ss_pred HHcCCcccCC
Confidence 9999997543
No 23
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.26 E-value=2.2e-10 Score=119.60 Aligned_cols=262 Identities=18% Similarity=0.145 Sum_probs=142.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCCcc
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSNFV 176 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~~~ 176 (767)
.+|||+++.+++|..++..... .......+.++|++|+|||+||+.+++.... .+.... .....
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~--~~~~~~-------------~~~~~ 67 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEMGV--NLKITS-------------GPALE 67 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHhCC--CEEEec-------------cchhc
Confidence 4699999999999988864322 1224556889999999999999999884321 111100 00000
Q ss_pred chHHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhhc-------------------CCCCcEEEEEcCchhHHhh
Q 035555 177 EFQSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKT-------------------CLHGSKILITTRKETVARI 237 (767)
Q Consensus 177 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~-------------------~~~gs~ilvTtR~~~v~~~ 237 (767)
...++...+... +...+|++|++..-.....+.+...+.. ..+.+-|..||+...+...
T Consensus 68 ~~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~ 145 (305)
T TIGR00635 68 KPGDLAAILTNL--EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSP 145 (305)
T ss_pred CchhHHHHHHhc--ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHH
Confidence 111111111111 2334666666643322222222222211 1124556667776444332
Q ss_pred h-c-CcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHHhHHhcCCCHHHHHHHHhhh
Q 035555 238 M-G-SADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIASLLRSKNTEKEWQNILESE 315 (767)
Q Consensus 238 ~-~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~~~~ 315 (767)
+ . ....+.+++++.++..+++.+.+....... ..+....|++.|+|.|-.+..++..+ |.......
T Consensus 146 l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~----~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~ 213 (305)
T TIGR00635 146 LRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEI----EPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRG 213 (305)
T ss_pred HHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCc----CHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcC
Confidence 1 1 134678999999999999998764322211 13456789999999997765555432 11110000
Q ss_pred cccc-hhhhhhhhhhHHhhcccCCHHHHHHHH-HhccCCCCcccChHHHHHHHHHcCCccCCCCCcHHHHHHHHHH-HHH
Q 035555 316 IWEI-EEVEKNLLAPLLLSYNELPSKVKQCFT-YCAIFPKNSKIWKDKLIELWMAQGFLNNKRSKEMEEIGEEYFN-ILA 392 (767)
Q Consensus 316 ~~~~-~~~~~~i~~~l~~sy~~L~~~~k~~f~-~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~l~-~L~ 392 (767)
.... .+.-......+...|..++...+..+. .++.+..+ .++.+.+.... | .....++..++ .|+
T Consensus 214 ~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~~~~~~~~~~e~~Li 281 (305)
T TIGR00635 214 QKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------EDADTIEDVYEPYLL 281 (305)
T ss_pred CCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C--------CCcchHHHhhhHHHH
Confidence 0000 011112223356678889988877666 55666533 44444433322 1 11234566678 699
Q ss_pred hcCCCccc
Q 035555 393 SRSFFQDF 400 (767)
Q Consensus 393 ~~sll~~~ 400 (767)
+++|+...
T Consensus 282 ~~~li~~~ 289 (305)
T TIGR00635 282 QIGFLQRT 289 (305)
T ss_pred HcCCcccC
Confidence 99999743
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.24 E-value=1.5e-11 Score=140.01 Aligned_cols=225 Identities=15% Similarity=0.086 Sum_probs=146.1
Q ss_pred eeeeeccC--CCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCC
Q 035555 446 CRRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDY 523 (767)
Q Consensus 446 ~L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~ 523 (767)
.|+.|+++ .++.+|..+. .+|++|++++|. ++.+|..+. .+|+.|+|++|. +..+|..+. .+|+.|++++
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSINR-ITELPERLP--SALQSLDLFH 271 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCCc-cCcCChhHh--CCCCEEECcC
Confidence 46666665 5667777654 589999999888 778887554 478999999887 778887664 5788999987
Q ss_pred CCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEec
Q 035555 524 TNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFD 603 (767)
Q Consensus 524 ~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 603 (767)
| .+..+|..+. .+|+.|.+..+....... .+. ++|..|.+.+.. +.... .. ..++|+.|+++.|
T Consensus 272 N-~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~----~lp--~sL~~L~Ls~N~-Lt~LP----~~--l~~sL~~L~Ls~N 335 (754)
T PRK15370 272 N-KISCLPENLP--EELRYLSVYDNSIRTLPA----HLP--SGITHLNVQSNS-LTALP----ET--LPPGLKTLEAGEN 335 (754)
T ss_pred C-ccCccccccC--CCCcEEECCCCccccCcc----cch--hhHHHHHhcCCc-cccCC----cc--ccccceeccccCC
Confidence 7 6777876653 467777665544332111 111 234444444321 11111 11 1257888999998
Q ss_pred CCccCCccccCCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeecc
Q 035555 604 CNVIPKNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFS 683 (767)
Q Consensus 604 ~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 683 (767)
....+|..+. ++|+.|++++|+ +..+|. .-.++|++|+|++|. ++.+|..+ .++|+.|+++
T Consensus 336 ~Lt~LP~~l~--~sL~~L~Ls~N~-L~~LP~-~lp~~L~~LdLs~N~-Lt~LP~~l--------------~~sL~~LdLs 396 (754)
T PRK15370 336 ALTSLPASLP--PELQVLDVSKNQ-ITVLPE-TLPPTITTLDVSRNA-LTNLPENL--------------PAALQIMQAS 396 (754)
T ss_pred ccccCChhhc--CcccEEECCCCC-CCcCCh-hhcCCcCEEECCCCc-CCCCCHhH--------------HHHHHHHhhc
Confidence 8888887553 789999999874 455654 224789999999886 55555421 2368888888
Q ss_pred CccccccCccCCccccccccCcccceEeeccCc
Q 035555 684 YMEELEEWDFGTATKGEIIIMPRLSCLIIFGCF 716 (767)
Q Consensus 684 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 716 (767)
+| ++..++.. .+.....+|++..|++.+|+
T Consensus 397 ~N-~L~~LP~s--l~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 397 RN-NLVRLPES--LPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred cC-CcccCchh--HHHHhhcCCCccEEEeeCCC
Confidence 87 56555431 11122345788888998886
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.21 E-value=4.6e-11 Score=135.26 Aligned_cols=223 Identities=17% Similarity=0.030 Sum_probs=153.2
Q ss_pred cccccccccCceeeeeccC--CCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCccccc
Q 035555 435 LCGEEALKLIKCRRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGK 512 (767)
Q Consensus 435 ~~~~~~~~~~~~L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~ 512 (767)
.....++...+.|+.|+++ .++.+|.. .++|+.|++++|. +..+|... .+|+.|++++|. +..+|..
T Consensus 232 N~Lt~LP~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~-L~~Lp~lp---~~L~~L~Ls~N~-Lt~LP~~--- 300 (788)
T PRK15387 232 NNLTSLPALPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP-LTHLPALP---SGLCKLWIFGNQ-LTSLPVL--- 300 (788)
T ss_pred CcCCCCCCCCCCCcEEEecCCccCcccCc---ccccceeeccCCc-hhhhhhch---hhcCEEECcCCc-ccccccc---
Confidence 3344445556788888887 46677753 4689999999998 88887633 578899999997 7888863
Q ss_pred CcCCcEeeCCCCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcC-CCCCCeeeeCCCCCCChhhhHHhhccC
Q 035555 513 LRKLMYLDNDYTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRL-ILLRECRIHGLGDVSDVGEARRAELEK 591 (767)
Q Consensus 513 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l-~~L~~L~i~~l~~~~~~~~~~~~~l~~ 591 (767)
+++|++|++++| .+..+|.... +|+.|.+..+.... +..+ .+|+.|++++. .+..+.. .
T Consensus 301 p~~L~~LdLS~N-~L~~Lp~lp~---~L~~L~Ls~N~L~~--------LP~lp~~Lq~LdLS~N-~Ls~LP~-------l 360 (788)
T PRK15387 301 PPGLQELSVSDN-QLASLPALPS---ELCKLWAYNNQLTS--------LPTLPSGLQELSVSDN-QLASLPT-------L 360 (788)
T ss_pred ccccceeECCCC-ccccCCCCcc---cccccccccCcccc--------ccccccccceEecCCC-ccCCCCC-------C
Confidence 478999999998 6777775433 45555544333221 1122 35777777652 1221110 1
Q ss_pred CCCcCceEEEecCCccCCccccCCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccc
Q 035555 592 KKNLFDLELRFDCNVIPKNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSV 671 (767)
Q Consensus 592 ~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~ 671 (767)
..+|+.|+++.|.+..+|.. ..+|+.|+|++| .++.+|.+ .++|+.|++++|. ++.+|.
T Consensus 361 p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~N~-LssIP~-------------- 419 (788)
T PRK15387 361 PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGN-RLTSLPVL--PSELKELMVSGNR-LTSLPM-------------- 419 (788)
T ss_pred CcccceehhhccccccCccc---ccccceEEecCC-cccCCCCc--ccCCCEEEccCCc-CCCCCc--------------
Confidence 34778889999988877763 357999999987 45567653 4789999999987 554442
Q ss_pred cCCcccceeeccCccccccCccCCccccccccCcccceEeeccCcc
Q 035555 672 IAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFK 717 (767)
Q Consensus 672 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 717 (767)
.+.+|+.|++++| +++.++. .+..+++|+.|+|++|+.
T Consensus 420 -l~~~L~~L~Ls~N-qLt~LP~------sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 420 -LPSGLLSLSVYRN-QLTRLPE------SLIHLSSETTVNLEGNPL 457 (788)
T ss_pred -chhhhhhhhhccC-cccccCh------HHhhccCCCeEECCCCCC
Confidence 2346888999887 5665543 466889999999999854
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.21 E-value=9.2e-10 Score=112.89 Aligned_cols=174 Identities=18% Similarity=0.169 Sum_probs=110.3
Q ss_pred CEEEEEEccCCChHHHHHHHHHcccchhhh-----h---hhHHHHHHHHHHHhhCCCCCccchHHHHHHHHH-----hcC
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNNDDVKKI-----L---RKEYGIARAIIEALTYSSSNFVEFQSLMQHIQK-----HVA 190 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~-----F---~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~-----~l~ 190 (767)
..++.|+|++|+||||+++.+++....... + ....+++..++..++.+... .+.......+.. ...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~~~~ 121 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQFAA 121 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHHHhC
Confidence 458999999999999999999885321110 1 11456777888877654332 222222333332 236
Q ss_pred CCeEEEEEeCCCCcChhhHHHHHHhhhcC---CCCcEEEEEcCchhHHhhhc----------CcceEecCCCChhHHHHH
Q 035555 191 GKKLLLVLDDVWNEDFYKWEQFYNCLKTC---LHGSKILITTRKETVARIMG----------SADIISVNVLSETECWLV 257 (767)
Q Consensus 191 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~---~~gs~ilvTtR~~~v~~~~~----------~~~~~~l~~L~~~~~~~l 257 (767)
+++.++|+||+|......++.+....... .....|++|.... ....+. ....+.+++++.+|..++
T Consensus 122 ~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~ 200 (269)
T TIGR03015 122 GKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETREY 200 (269)
T ss_pred CCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHH
Confidence 78899999999987766777666443321 2223455665532 221111 134678999999999999
Q ss_pred HHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHHhHH
Q 035555 258 FESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIASLL 299 (767)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 299 (767)
+...+..........-..+..+.|++.++|.|..|+.++..+
T Consensus 201 l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 201 IEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 887653222111111224678899999999999999998876
No 27
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.19 E-value=4.7e-13 Score=117.68 Aligned_cols=167 Identities=28% Similarity=0.298 Sum_probs=123.4
Q ss_pred CCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCc-ccccc
Q 035555 454 YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSL-RYLPV 532 (767)
Q Consensus 454 ~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l-~~lp~ 532 (767)
.+..+|+.+..+.+|+.|++++|. ++.+|.+++.+++|+.|++..|. +..+|.+|+.++.|+.||+.+|+.- ..+|.
T Consensus 44 Kl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldltynnl~e~~lpg 121 (264)
T KOG0617|consen 44 KLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDLTYNNLNENSLPG 121 (264)
T ss_pred ceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhccccccccccCCc
Confidence 567789999999999999999999 99999999999999999999988 8899999999999999999998322 46777
Q ss_pred cCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCCccc
Q 035555 533 GIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPKNWI 612 (767)
Q Consensus 533 ~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~ 612 (767)
++..++.|+.|.+..+... ..+...+++++|+.|.+..|....+|..+
T Consensus 122 nff~m~tlralyl~dndfe--------------------------------~lp~dvg~lt~lqil~lrdndll~lpkei 169 (264)
T KOG0617|consen 122 NFFYMTTLRALYLGDNDFE--------------------------------ILPPDVGKLTNLQILSLRDNDLLSLPKEI 169 (264)
T ss_pred chhHHHHHHHHHhcCCCcc--------------------------------cCChhhhhhcceeEEeeccCchhhCcHHH
Confidence 7766766766654332221 11234455666777777777778888888
Q ss_pred cCCCCccEEEEeccCCCCCCCC-CCCCC---CCCeeeecCCCCceEe
Q 035555 613 MSLTNLRYLSLSLFKNCEQLLP-LGKLQ---SLEYLQIGGMHGVKRV 655 (767)
Q Consensus 613 ~~l~~L~~L~L~~~~~~~~l~~-l~~l~---~L~~L~L~~~~~l~~~ 655 (767)
+.++.|+.|++.+| .++.+|+ ++++. +=+.+.+.+|+-+.-+
T Consensus 170 g~lt~lrelhiqgn-rl~vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 170 GDLTRLRELHIQGN-RLTVLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred HHHHHHHHHhcccc-eeeecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 88999999999987 4455554 44432 2234445555544333
No 28
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.12 E-value=2.9e-08 Score=106.74 Aligned_cols=294 Identities=14% Similarity=0.085 Sum_probs=161.1
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchh-hh----h-----h-----hHH
Q 035555 94 IDESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVK-KI----L-----R-----KEY 158 (767)
Q Consensus 94 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~-~~----F-----~-----~~~ 158 (767)
..+..++||++++++|...|..... +.....+.|+|++|+|||++++.++++..-. .. | + ...
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~ 89 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLY 89 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHH
Confidence 3455799999999999999875321 1244578999999999999999998742110 00 1 1 146
Q ss_pred HHHHHHHHHhh---CCCC-CccchHHHHHHHHHhcC--CCeEEEEEeCCCCcC---hhhHHHHHHhh-hcCC--CCcEEE
Q 035555 159 GIARAIIEALT---YSSS-NFVEFQSLMQHIQKHVA--GKKLLLVLDDVWNED---FYKWEQFYNCL-KTCL--HGSKIL 226 (767)
Q Consensus 159 ~i~~~i~~~l~---~~~~-~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---~~~~~~l~~~l-~~~~--~gs~il 226 (767)
.++..+++++. ...+ ...+..+....+.+.+. +++++||||+++.-. ......+.... .... ....+|
T Consensus 90 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI 169 (365)
T TIGR02928 90 QVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVI 169 (365)
T ss_pred HHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEE
Confidence 67777888774 2111 12233445555555553 568899999996541 11112222110 1111 223445
Q ss_pred EEcCchhHHhhhc-----C--cceEecCCCChhHHHHHHHHhcCC-CCCCcchhhHHHHHHHHHhhcCCCcch-HHHHHh
Q 035555 227 ITTRKETVARIMG-----S--ADIISVNVLSETECWLVFESLGFS-GKSMEERENLEKIGREIIRKCKGLPLV-AKTIAS 297 (767)
Q Consensus 227 vTtR~~~v~~~~~-----~--~~~~~l~~L~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~g~PLa-i~~~~~ 297 (767)
.+|+.......+. . ...+.+++.+.++..+++..++-. .......++..+....++....|.|-. +.++-.
T Consensus 170 ~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~ 249 (365)
T TIGR02928 170 GISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRV 249 (365)
T ss_pred EEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5554433221111 1 246889999999999999887521 111112233334455567777788743 333222
Q ss_pred HH----hc-C--CCHHHHHHHHhhhcccchhhhhhhhhhHHhhcccCCHHHHHHHHHhccCC--CCcccChHHHHHHHH-
Q 035555 298 LL----RS-K--NTEKEWQNILESEIWEIEEVEKNLLAPLLLSYNELPSKVKQCFTYCAIFP--KNSKIWKDKLIELWM- 367 (767)
Q Consensus 298 ~l----~~-~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~s~fp--~~~~i~~~~li~~w~- 367 (767)
.. .. . -+.+....+.+... .....-++..||.+.+..+..+...- .+..+....+...+-
T Consensus 250 a~~~a~~~~~~~it~~~v~~a~~~~~----------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 250 AGEIAEREGAERVTEDHVEKAQEKIE----------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 11 11 1 13344433333210 12233466789998887666554321 333455666665331
Q ss_pred HcCCccCCCCCcHHHHHHHHHHHHHhcCCCcccc
Q 035555 368 AQGFLNNKRSKEMEEIGEEYFNILASRSFFQDFE 401 (767)
Q Consensus 368 a~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~ 401 (767)
....+... .........++..|...+++....
T Consensus 320 ~~~~~~~~--~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 320 VCEDIGVD--PLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHhcCCC--CCcHHHHHHHHHHHHhcCCeEEEE
Confidence 11111111 122456778899999999998643
No 29
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.10 E-value=9.2e-10 Score=110.39 Aligned_cols=186 Identities=23% Similarity=0.171 Sum_probs=96.5
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchh---hhhh-h--------HHHH------
Q 035555 99 IFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVK---KILR-K--------EYGI------ 160 (767)
Q Consensus 99 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~---~~F~-~--------~~~i------ 160 (767)
|+||++++++|.+++... ..+.+.|+|+.|+|||+|++++.+..+.. ..|- . ...+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 74 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSL 74 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHH
Confidence 799999999999988753 34689999999999999999998743111 0010 0 1111
Q ss_pred HHHHHHHhhCCCC----------CccchHHHHHHHHHhcC--CCeEEEEEeCCCCcC------hhhHHHHHHhhhc---C
Q 035555 161 ARAIIEALTYSSS----------NFVEFQSLMQHIQKHVA--GKKLLLVLDDVWNED------FYKWEQFYNCLKT---C 219 (767)
Q Consensus 161 ~~~i~~~l~~~~~----------~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~l~~~l~~---~ 219 (767)
...+...+..... ...........+.+.+. +++++||+||+.... ..-...+...+.. .
T Consensus 75 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 154 (234)
T PF01637_consen 75 ADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQ 154 (234)
T ss_dssp HCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----
T ss_pred HHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcccc
Confidence 1111122211100 11122222233333332 345999999995433 1223345555544 3
Q ss_pred CCCcEEEEEcCchhHHhh--------hcCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcch
Q 035555 220 LHGSKILITTRKETVARI--------MGSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLV 291 (767)
Q Consensus 220 ~~gs~ilvTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 291 (767)
.+.+.| +++....+... .+....+.+++|+.+++++++....-.. . .. +.-.+..++|+..+||+|..
T Consensus 155 ~~~~~v-~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~~gG~P~~ 230 (234)
T PF01637_consen 155 QNVSIV-ITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEEIYSLTGGNPRY 230 (234)
T ss_dssp TTEEEE-EEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HHH
T ss_pred CCceEE-EECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHHHHHHhCCCHHH
Confidence 344444 44444433322 2334569999999999999999864322 1 11 11234468899999999988
Q ss_pred HHH
Q 035555 292 AKT 294 (767)
Q Consensus 292 i~~ 294 (767)
|..
T Consensus 231 l~~ 233 (234)
T PF01637_consen 231 LQE 233 (234)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.09 E-value=7.1e-12 Score=132.30 Aligned_cols=66 Identities=27% Similarity=0.263 Sum_probs=45.4
Q ss_pred ccccccCCcccEEeecCCccc-----cccchhhcCCCCCcEEEccCCccc------cccCcccccCcCCcEeeCCCCC
Q 035555 459 PTNIEKLIHLKYLNLSSQKKI-----KRLPETLCELYNLECLAISFCTNL------RQLPQGIGKLRKLMYLDNDYTN 525 (767)
Q Consensus 459 p~~~~~l~~L~~L~L~~~~~~-----~~lp~~~~~l~~L~~L~L~~~~~l------~~lp~~~~~l~~L~~L~l~~~~ 525 (767)
+..+..+.+|++|++++|. + ..++..+...++|++|+++++..- ..++..+..+++|++|++++|.
T Consensus 16 ~~~~~~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred HHHHHHHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence 3445566778888888887 4 235666777788888888887622 1233456677888888888874
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.01 E-value=2.9e-11 Score=127.63 Aligned_cols=257 Identities=18% Similarity=0.095 Sum_probs=159.8
Q ss_pred EeecCCccc-cccchhhcCCCCCcEEEccCCccc----cccCcccccCcCCcEeeCCCCCCc------ccccccCcCCcC
Q 035555 471 LNLSSQKKI-KRLPETLCELYNLECLAISFCTNL----RQLPQGIGKLRKLMYLDNDYTNSL------RYLPVGIRELIR 539 (767)
Q Consensus 471 L~L~~~~~~-~~lp~~~~~l~~L~~L~L~~~~~l----~~lp~~~~~l~~L~~L~l~~~~~l------~~lp~~~~~l~~ 539 (767)
|+|.++..- ...+..+..+.+|+.|++++|... ..++..+...++|++|+++++... ..++..+..+.+
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 556555522 234455667788999999999831 345666778888999999887322 123344666778
Q ss_pred CcccceeEecCccCCCCChhhhhcC---CCCCCeeeeCCCCCCChhhhHHhhccCC-CCcCceEEEecCCc-----cCCc
Q 035555 540 LRRVRKFVVGGGYDRACSLESLKRL---ILLRECRIHGLGDVSDVGEARRAELEKK-KNLFDLELRFDCNV-----IPKN 610 (767)
Q Consensus 540 L~~L~~~~~~~~~~~~~~~~~l~~l---~~L~~L~i~~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~-----~~p~ 610 (767)
|+.|.+..+.... .....+..+ ++|+.|.++++.--..........+..+ ++|+.|++++|... .++.
T Consensus 83 L~~L~l~~~~~~~---~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 83 LQELDLSDNALGP---DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred eeEEEccCCCCCh---hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 8888765544432 122333333 4489999987542212222334456666 89999999999875 3344
Q ss_pred cccCCCCccEEEEeccCCCC-CCC----CCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCc
Q 035555 611 WIMSLTNLRYLSLSLFKNCE-QLL----PLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYM 685 (767)
Q Consensus 611 ~~~~l~~L~~L~L~~~~~~~-~l~----~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 685 (767)
.+..+++|+.|++++|.... .++ .+..+++|++|++++|. ++..+..... ..+..+++|+.|++++|
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~-------~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALA-------ETLASLKSLEVLNLGDN 231 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHH-------HHhcccCCCCEEecCCC
Confidence 55577899999999886432 111 24456799999999986 3322211110 01237899999999998
Q ss_pred cccccCccCCccccccccCcccceEeeccCcccc-----CCCcCCCCCCCCcEEEecCCCc
Q 035555 686 EELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLK-----ALPDLLLQKTTLQKLHIWGGCP 741 (767)
Q Consensus 686 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-----~lp~~~~~l~sL~~L~l~~~c~ 741 (767)
+ +.++.............+.|+.|++++| .++ .+...+..+++|+.+++ ++|+
T Consensus 232 ~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l-~~N~ 289 (319)
T cd00116 232 N-LTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDL-RGNK 289 (319)
T ss_pred c-CchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEEC-CCCC
Confidence 4 4432211000000012479999999999 443 23445556789999999 6664
No 32
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.99 E-value=2.1e-08 Score=116.93 Aligned_cols=304 Identities=18% Similarity=0.156 Sum_probs=182.3
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHccc------chhhhhhh---------HHHHHHH
Q 035555 99 IFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNND------DVKKILRK---------EYGIARA 163 (767)
Q Consensus 99 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~------~~~~~F~~---------~~~i~~~ 163 (767)
++||+.+++.|.+.+..-.. +...++.+.|.+|||||+|+++|.... -++..|+. ..+..++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 78999999999999976543 355699999999999999999997631 12333432 2222222
Q ss_pred HHHHh-------------------hCCCCCc----------------------cchH-----HHHHHHHHhcC-CCeEEE
Q 035555 164 IIEAL-------------------TYSSSNF----------------------VEFQ-----SLMQHIQKHVA-GKKLLL 196 (767)
Q Consensus 164 i~~~l-------------------~~~~~~~----------------------~~~~-----~~~~~l~~~l~-~k~~Ll 196 (767)
+..++ +...... ...+ ..+..+..... .++..+
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 22222 1110000 0000 12233333333 469999
Q ss_pred EEeCCCCcChhhHHHHHHhhhcCCC----CcEE--EEEcCch--hHHhhhcCcceEecCCCChhHHHHHHHHhcCCCCCC
Q 035555 197 VLDDVWNEDFYKWEQFYNCLKTCLH----GSKI--LITTRKE--TVARIMGSADIISVNVLSETECWLVFESLGFSGKSM 268 (767)
Q Consensus 197 VlDdv~~~~~~~~~~l~~~l~~~~~----gs~i--lvTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~ 268 (767)
|+||+.+.|....+.+......-.. ...| +.|.+.. .+.........+.+.||+..+...+.........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~-- 236 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK-- 236 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc--
Confidence 9999988877666665555443321 1122 2333332 2222233467999999999999999988763322
Q ss_pred cchhhHHHHHHHHHhhcCCCcchHHHHHhHHhcC------CCHHHHHHHHhhhcccchhhhhhhhhhHHhhcccCCHHHH
Q 035555 269 EERENLEKIGREIIRKCKGLPLVAKTIASLLRSK------NTEKEWQNILESEIWEIEEVEKNLLAPLLLSYNELPSKVK 342 (767)
Q Consensus 269 ~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~------~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k 342 (767)
....+..+.|+++..|+|+.+..+-..+... .+...|..-... .......+.+...+..-.+.||...|
T Consensus 237 ---~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~--i~~~~~~~~vv~~l~~rl~kL~~~t~ 311 (849)
T COG3899 237 ---LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS--LGILATTDAVVEFLAARLQKLPGTTR 311 (849)
T ss_pred ---cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh--cCCchhhHHHHHHHHHHHhcCCHHHH
Confidence 2234558889999999999999999888764 233344322211 11111112255567888999999999
Q ss_pred HHHHHhccCCCCcccChHHHHHHHHHcCCccCCCCCcHHHHHHHHHHHHHhcCCCcccccCCC---CCEE-EEEeChHHH
Q 035555 343 QCFTYCAIFPKNSKIWKDKLIELWMAQGFLNNKRSKEMEEIGEEYFNILASRSFFQDFERGYD---GKIY-QCKVHDIVH 418 (767)
Q Consensus 343 ~~f~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~---~~~~-~~~mHdlv~ 418 (767)
..+...|++...+. ...|...|- ......+...++.|....++...+...+ .... +-..||.++
T Consensus 312 ~Vl~~AA~iG~~F~--l~~La~l~~----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vq 379 (849)
T COG3899 312 EVLKAAACIGNRFD--LDTLAALAE----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQ 379 (849)
T ss_pred HHHHHHHHhCccCC--HHHHHHHHh----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHH
Confidence 99999999986655 555555441 1344556666666666655543211111 1111 125788888
Q ss_pred HHHHHh
Q 035555 419 DFAQFL 424 (767)
Q Consensus 419 ~~a~~~ 424 (767)
+.|...
T Consensus 380 qaaY~~ 385 (849)
T COG3899 380 QAAYNL 385 (849)
T ss_pred HHHhcc
Confidence 777443
No 33
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.98 E-value=4.2e-08 Score=108.23 Aligned_cols=296 Identities=17% Similarity=0.192 Sum_probs=175.1
Q ss_pred CCCCCCCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHccc--c--h-----hhhhhhHHHH
Q 035555 90 SISSIDESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNND--D--V-----KKILRKEYGI 160 (767)
Q Consensus 90 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~--~--~-----~~~F~~~~~i 160 (767)
..+|.++...|-|.+.++.+.. ..+.|.+.|..++|.|||||+.+..... . + .+.=.....+
T Consensus 12 ~~~P~~~~~~v~R~rL~~~L~~---------~~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF 82 (894)
T COG2909 12 LVRPVRPDNYVVRPRLLDRLRR---------ANDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARF 82 (894)
T ss_pred cCCCCCcccccccHHHHHHHhc---------CCCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHH
Confidence 3344445567777666555543 2378999999999999999999986310 0 0 0000013444
Q ss_pred HHHHHHHhhCCCCC-------------ccchHHHHHHHHHhcC--CCeEEEEEeCCCCcChhhHH-HHHHhhhcCCCCcE
Q 035555 161 ARAIIEALTYSSSN-------------FVEFQSLMQHIQKHVA--GKKLLLVLDDVWNEDFYKWE-QFYNCLKTCLHGSK 224 (767)
Q Consensus 161 ~~~i~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~-~l~~~l~~~~~gs~ 224 (767)
.+.++..+....+. ..+...+...+...+. .++..+||||..-....... .+...+....++-.
T Consensus 83 ~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~ 162 (894)
T COG2909 83 LSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLT 162 (894)
T ss_pred HHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeE
Confidence 44444444422221 1233344444444333 46899999998644333333 35555666677889
Q ss_pred EEEEcCchhH---HhhhcCcceEec----CCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHHh
Q 035555 225 ILITTRKETV---ARIMGSADIISV----NVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIAS 297 (767)
Q Consensus 225 ilvTtR~~~v---~~~~~~~~~~~l----~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 297 (767)
++||||...- ++..-.....++ -.|+.+|+-++|.......- + +..++.+.+..+|-+-|+..++-
T Consensus 163 lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L---d----~~~~~~L~~~teGW~~al~L~aL 235 (894)
T COG2909 163 LVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL---D----AADLKALYDRTEGWAAALQLIAL 235 (894)
T ss_pred EEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC---C----hHHHHHHHhhcccHHHHHHHHHH
Confidence 9999998532 221111222222 34799999999988752211 1 12378899999999999999998
Q ss_pred HHhcCCCHHHHHHHHhhhcccchhhhhhhhhhH-HhhcccCCHHHHHHHHHhccCCCCcccChHHHHHHHHHcCCccCCC
Q 035555 298 LLRSKNTEKEWQNILESEIWEIEEVEKNLLAPL-LLSYNELPSKVKQCFTYCAIFPKNSKIWKDKLIELWMAQGFLNNKR 376 (767)
Q Consensus 298 ~l~~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l-~~sy~~L~~~~k~~f~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~ 376 (767)
.++.+.+.+.-...+. +..+.+..-| .=-++.||+++|..+.-+|+++.-. ..|+..-
T Consensus 236 a~~~~~~~~q~~~~Ls-------G~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f~----~eL~~~L---------- 294 (894)
T COG2909 236 ALRNNTSAEQSLRGLS-------GAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRFN----DELCNAL---------- 294 (894)
T ss_pred HccCCCcHHHHhhhcc-------chHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhh----HHHHHHH----------
Confidence 8884434332221111 1111111111 2246889999999999999985421 2222211
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcccccCCCCCEEEEEeChHHHHHHHHhhcc
Q 035555 377 SKEMEEIGEEYFNILASRSFFQDFERGYDGKIYQCKVHDIVHDFAQFLCRK 427 (767)
Q Consensus 377 ~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~ 427 (767)
.-++.+...+++|.+++++-..-.+ ....|+.|.+..+|.+.-...
T Consensus 295 --tg~~ng~amLe~L~~~gLFl~~Ldd---~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 295 --TGEENGQAMLEELERRGLFLQRLDD---EGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred --hcCCcHHHHHHHHHhCCCceeeecC---CCceeehhHHHHHHHHhhhcc
Confidence 0123466789999999988643222 124589999999998765543
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.96 E-value=2.8e-11 Score=120.61 Aligned_cols=102 Identities=24% Similarity=0.291 Sum_probs=74.4
Q ss_pred eeccCCCcccc-cccccCCcccEEeecCCcccccc-chhhcCCCCCcEEEccCCccccccCcc-cccCcCCcEeeCCCCC
Q 035555 449 WRCDNYIKEIP-TNIEKLIHLKYLNLSSQKKIKRL-PETLCELYNLECLAISFCTNLRQLPQG-IGKLRKLMYLDNDYTN 525 (767)
Q Consensus 449 ~l~l~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~~L~l~~~~ 525 (767)
.|+-+.++.+| ..|+.++.||.||||+|. |..+ |.+|.++.+|..|-+.+++.++.+|.. |+.|..|+.|.+.-|
T Consensus 73 rLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan- 150 (498)
T KOG4237|consen 73 RLDQNQISSIPPGAFKTLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN- 150 (498)
T ss_pred EeccCCcccCChhhccchhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh-
Confidence 35666788887 468899999999999998 6654 678888998888888886668888874 677778887777666
Q ss_pred Cccccc-ccCcCCcCCcccceeEecCcc
Q 035555 526 SLRYLP-VGIRELIRLRRVRKFVVGGGY 552 (767)
Q Consensus 526 ~l~~lp-~~~~~l~~L~~L~~~~~~~~~ 552 (767)
.+..++ ..+..|++|..|.++.+....
T Consensus 151 ~i~Cir~~al~dL~~l~lLslyDn~~q~ 178 (498)
T KOG4237|consen 151 HINCIRQDALRDLPSLSLLSLYDNKIQS 178 (498)
T ss_pred hhcchhHHHHHHhhhcchhcccchhhhh
Confidence 444444 346667777777766665544
No 35
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.88 E-value=1.1e-08 Score=103.53 Aligned_cols=154 Identities=18% Similarity=0.233 Sum_probs=96.1
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHH-HhcCCCeEEEEEeCC
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQ-KHVAGKKLLLVLDDV 201 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv 201 (767)
.+.-+.+||++|+||||||+.+... ....|.. +........+..+..+.-+ ....+++.+|++|.|
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f~~-----------~sAv~~gvkdlr~i~e~a~~~~~~gr~tiLflDEI 113 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGT--TNAAFEA-----------LSAVTSGVKDLREIIEEARKNRLLGRRTILFLDEI 113 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHh--hCCceEE-----------eccccccHHHHHHHHHHHHHHHhcCCceEEEEehh
Confidence 6677889999999999999999883 4444443 1111222333444444332 233489999999999
Q ss_pred CCcChhhHHHHHHhhhcCCCCcEEEE--EcCchhH---HhhhcCcceEecCCCChhHHHHHHHHhcCCCCCCcc---hhh
Q 035555 202 WNEDFYKWEQFYNCLKTCLHGSKILI--TTRKETV---ARIMGSADIISVNVLSETECWLVFESLGFSGKSMEE---REN 273 (767)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v---~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~---~~~ 273 (767)
.+-+..+-+.++..+ -.|.-|+| ||-++.. ....+...++.+++|+.++..+++.+.+........ ..-
T Consensus 114 HRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i 190 (436)
T COG2256 114 HRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVL 190 (436)
T ss_pred hhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccC
Confidence 877665555555544 45887777 4444322 223345789999999999999999884322221111 011
Q ss_pred HHHHHHHHHhhcCCCcchH
Q 035555 274 LEKIGREIIRKCKGLPLVA 292 (767)
Q Consensus 274 ~~~~~~~i~~~~~g~PLai 292 (767)
.++....+++.++|---++
T Consensus 191 ~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 191 DEEALDYLVRLSNGDARRA 209 (436)
T ss_pred CHHHHHHHHHhcCchHHHH
Confidence 2345666888888766443
No 36
>PF05729 NACHT: NACHT domain
Probab=98.85 E-value=1.8e-08 Score=94.95 Aligned_cols=133 Identities=21% Similarity=0.235 Sum_probs=79.5
Q ss_pred EEEEEEccCCChHHHHHHHHHcccchhhh----hhh--------------HHHHHHHHHHHhhCCCCCccchHHHHHHHH
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNNDDVKKI----LRK--------------EYGIARAIIEALTYSSSNFVEFQSLMQHIQ 186 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~--------------~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~ 186 (767)
|++.|+|.+|+||||+++.++.+...... +.. ...+...+........ .........
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~-- 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEELLQE-- 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHHHHHH--
Confidence 58999999999999999998865222111 111 1123333333322111 111111111
Q ss_pred HhcCCCeEEEEEeCCCCcChh-------hHHH-HHHhhhc-CCCCcEEEEEcCchhH---HhhhcCcceEecCCCChhHH
Q 035555 187 KHVAGKKLLLVLDDVWNEDFY-------KWEQ-FYNCLKT-CLHGSKILITTRKETV---ARIMGSADIISVNVLSETEC 254 (767)
Q Consensus 187 ~~l~~k~~LlVlDdv~~~~~~-------~~~~-l~~~l~~-~~~gs~ilvTtR~~~v---~~~~~~~~~~~l~~L~~~~~ 254 (767)
-..+.++++||+|++++-... .+.. +...++. ..++++++||+|.... .........+.+.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 122578999999999653221 1233 3333333 3578999999999665 33344456899999999999
Q ss_pred HHHHHHhc
Q 035555 255 WLVFESLG 262 (767)
Q Consensus 255 ~~l~~~~~ 262 (767)
.+++.++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99998763
No 37
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.85 E-value=5.2e-08 Score=105.59 Aligned_cols=178 Identities=18% Similarity=0.215 Sum_probs=107.2
Q ss_pred CCccccchhHHHH---HHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCC
Q 035555 96 ESEIFGREKEKSE---LVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSS 172 (767)
Q Consensus 96 ~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~ 172 (767)
-.++||++..+.. +.+++... ....+.++|++|+||||+|+.+++. ....|... ....
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~~~l-----------~a~~ 71 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGA--TDAPFEAL-----------SAVT 71 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHH--hCCCEEEE-----------eccc
Confidence 4568999888666 77777433 4457888999999999999999874 22223220 0001
Q ss_pred CCccchHHHHHHHHHh-cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEE--EcCchh--H-HhhhcCcceEec
Q 035555 173 SNFVEFQSLMQHIQKH-VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILI--TTRKET--V-ARIMGSADIISV 246 (767)
Q Consensus 173 ~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~--v-~~~~~~~~~~~l 246 (767)
....+..++.+..... ..+++.+|++|+++.......+.+...+.. |..++| ||.+.. + .........+.+
T Consensus 72 ~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~SR~~~~~~ 148 (413)
T PRK13342 72 SGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALLSRAQVFEL 148 (413)
T ss_pred ccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHhccceeeEe
Confidence 1111222222222221 245788999999987766666666666554 455555 333322 1 122333578999
Q ss_pred CCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHH
Q 035555 247 NVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIA 296 (767)
Q Consensus 247 ~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 296 (767)
.+++.++...++.+......... ..-..+..+.|++.++|.+..+..+.
T Consensus 149 ~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 149 KPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred CCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999988643211100 01123457778999999987664443
No 38
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.80 E-value=1e-06 Score=98.31 Aligned_cols=203 Identities=11% Similarity=0.081 Sum_probs=118.1
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchh---h---hhh----------hHH
Q 035555 95 DESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVK---K---ILR----------KEY 158 (767)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~---~---~F~----------~~~ 158 (767)
.|..+.|||+++++|...|...-. +.....++.|+|++|.|||++++.|.+..+.. . .|. ...
T Consensus 753 VPD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 456789999999999998875432 12234678899999999999999997642110 0 121 155
Q ss_pred HHHHHHHHHhhCCCC-CccchHHHHHHHHHhcC---CCeEEEEEeCCCCcChhhHHHHHHhhhc-CCCCcEEEE--EcCc
Q 035555 159 GIARAIIEALTYSSS-NFVEFQSLMQHIQKHVA---GKKLLLVLDDVWNEDFYKWEQFYNCLKT-CLHGSKILI--TTRK 231 (767)
Q Consensus 159 ~i~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilv--TtR~ 231 (767)
.+...|.+++.+..+ ......+....+...+. +...+||||+++.-....-+.+...+.. ...+++|+| .|.+
T Consensus 832 sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 677777777744322 22223344455555442 2345899999954321111223333332 123455444 3332
Q ss_pred hhH--------HhhhcCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHHhHH
Q 035555 232 ETV--------ARIMGSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIASLL 299 (767)
Q Consensus 232 ~~v--------~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 299 (767)
.+. ...++ ...+..++.+.++-.+++..++-..........++-+|+.++..-|-.-.||.++-...
T Consensus 912 lDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 111 11121 23467799999999999998874332223445555566656555566666776665554
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.6e-09 Score=109.74 Aligned_cols=213 Identities=19% Similarity=0.122 Sum_probs=123.2
Q ss_pred ccCCcccEEeecCCccccccch--hhcCCCCCcEEEccCCccc--cccCcccccCcCCcEeeCCCCCCcccccccCcCCc
Q 035555 463 EKLIHLKYLNLSSQKKIKRLPE--TLCELYNLECLAISFCTNL--RQLPQGIGKLRKLMYLDNDYTNSLRYLPVGIRELI 538 (767)
Q Consensus 463 ~~l~~L~~L~L~~~~~~~~lp~--~~~~l~~L~~L~L~~~~~l--~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~ 538 (767)
.++.+|+.+.|.++. +...+. ....|++++.|||+.|-.. ..+-.....+++|+.|+++.|. +... +++..
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~---~~s~~ 192 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNF---ISSNT 192 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCC---ccccc
Confidence 456677777777777 666653 4667888888888877522 1222334677888888888772 2111 10000
Q ss_pred CCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCC-ccCCccccCCCC
Q 035555 539 RLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCN-VIPKNWIMSLTN 617 (767)
Q Consensus 539 ~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~p~~~~~l~~ 617 (767)
+. .+++|..|.++.|+- ........+..+++|+.|+|..|.. ........-+..
T Consensus 193 ---~~-------------------~l~~lK~L~l~~CGl---s~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~ 247 (505)
T KOG3207|consen 193 ---TL-------------------LLSHLKQLVLNSCGL---SWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT 247 (505)
T ss_pred ---hh-------------------hhhhhheEEeccCCC---CHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence 00 223344444444431 1233344566778888888887742 222222234577
Q ss_pred ccEEEEeccCCCC--CCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCccCC
Q 035555 618 LRYLSLSLFKNCE--QLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGT 695 (767)
Q Consensus 618 L~~L~L~~~~~~~--~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~ 695 (767)
|+.|+|++|+.+. ..+..+.+|.|..|+++.|. ++.+..--.+. ......||+|+.|++..| ++.+|..-
T Consensus 248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s-----~~kt~~f~kL~~L~i~~N-~I~~w~sl- 319 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVES-----LDKTHTFPKLEYLNISEN-NIRDWRSL- 319 (505)
T ss_pred HhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccc-----hhhhcccccceeeecccC-cccccccc-
Confidence 8888998876544 23457888899888888766 33332110000 001237899999999888 56666531
Q ss_pred ccccccccCcccceEeeccCc
Q 035555 696 ATKGEIIIMPRLSCLIIFGCF 716 (767)
Q Consensus 696 ~~~~~~~~~~~L~~L~l~~c~ 716 (767)
..+..+++|+.|.+..++
T Consensus 320 ---~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 320 ---NHLRTLENLKHLRITLNY 337 (505)
T ss_pred ---chhhccchhhhhhccccc
Confidence 134567788888877653
No 40
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.75 E-value=1.2e-07 Score=89.72 Aligned_cols=183 Identities=18% Similarity=0.179 Sum_probs=103.4
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCC
Q 035555 95 DESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSN 174 (767)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~ 174 (767)
.-.+|||.++.++.+.-++..... .++....+.+||++|+||||||..+++. ....|.. . +.+.
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~~-----------~--sg~~ 85 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFKI-----------T--SGPA 85 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--EEE-----------E--ECCC
T ss_pred CHHHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCeEe-----------c--cchh
Confidence 446899999999887655542211 1235678999999999999999999994 4333432 1 1122
Q ss_pred ccchHHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhhcC--------CCCc-----------EEEEEcCchhHH
Q 035555 175 FVEFQSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTC--------LHGS-----------KILITTRKETVA 235 (767)
Q Consensus 175 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~--------~~gs-----------~ilvTtR~~~v~ 235 (767)
.....++...+.. + +++-+|++|.+..-+...-+.+.....++ ++++ -|=-|||...+.
T Consensus 86 i~k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls 163 (233)
T PF05496_consen 86 IEKAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLS 163 (233)
T ss_dssp --SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTS
T ss_pred hhhHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccc
Confidence 2334455544443 3 34557888999887766666666666543 1222 233588865444
Q ss_pred hhhcC--cceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHHhHH
Q 035555 236 RIMGS--ADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIASLL 299 (767)
Q Consensus 236 ~~~~~--~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 299 (767)
..+.. .-...++..+.+|-.++..+.+...+.. -.++.+.+|++.+.|-|--..-+-+.+
T Consensus 164 ~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~----i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 164 SPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE----IDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp HCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E----E-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred hhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC----cCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 33322 2245799999999999999877443332 223558899999999997555444443
No 41
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.73 E-value=6.2e-10 Score=112.13 Aligned_cols=297 Identities=16% Similarity=0.096 Sum_probs=177.8
Q ss_pred eeeeeccCCCcccc-----cccccCCcccEEeecCCcccccc--chhhcCCCCCcEEEccCCccccccCc--ccccCcCC
Q 035555 446 CRRWRCDNYIKEIP-----TNIEKLIHLKYLNLSSQKKIKRL--PETLCELYNLECLAISFCTNLRQLPQ--GIGKLRKL 516 (767)
Q Consensus 446 ~L~~l~l~~~~~lp-----~~~~~l~~L~~L~L~~~~~~~~l--p~~~~~l~~L~~L~L~~~~~l~~lp~--~~~~l~~L 516 (767)
.|+.|.+.++..++ ..-.++++++.|++.+|..++.- -..-..|++|++|++-.|..++...- ....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 45566665443332 34567889999999999877642 23344799999999999887754321 23578999
Q ss_pred cEeeCCCCCCccc--ccccCcCCcCCcccceeEecCccCCCCChhhhh----cCCCCCCeeeeCCCCCCChhhhHHhhcc
Q 035555 517 MYLDNDYTNSLRY--LPVGIRELIRLRRVRKFVVGGGYDRACSLESLK----RLILLRECRIHGLGDVSDVGEARRAELE 590 (767)
Q Consensus 517 ~~L~l~~~~~l~~--lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~----~l~~L~~L~i~~l~~~~~~~~~~~~~l~ 590 (767)
.+|++++|..+.. +..-....++++.+..-.+ . ....+.+. ....+-.+++..+..+++.. ....-.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC--~---e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~--~~~i~~ 291 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC--L---ELELEALLKAAAYCLEILKLNLQHCNQLTDED--LWLIAC 291 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhccc--c---cccHHHHHHHhccChHhhccchhhhccccchH--HHHHhh
Confidence 9999999965443 1111223333443322211 1 11112221 11223333444554444432 222334
Q ss_pred CCCCcCceEEEecCCcc-CC-cccc-CCCCccEEEEeccCCCCCCC--CC-CCCCCCCeeeecCCCCceEecccccCCCC
Q 035555 591 KKKNLFDLELRFDCNVI-PK-NWIM-SLTNLRYLSLSLFKNCEQLL--PL-GKLQSLEYLQIGGMHGVKRVGNEFLGVES 664 (767)
Q Consensus 591 ~~~~L~~L~l~~~~~~~-~p-~~~~-~l~~L~~L~L~~~~~~~~l~--~l-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 664 (767)
.+..|+.|..+.+..+. .+ ..++ +.++|+.|.++.|....+.- .+ .+.+.|+.+++.+|..+.+. .+....
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sls- 368 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLASLS- 368 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhhhc-
Confidence 56778888877765421 11 1122 67899999999988655432 23 36888999998887643322 222222
Q ss_pred CCCCccccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCccccC-CCcCCCCCCCCcEEEecCCCchh
Q 035555 665 DTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKA-LPDLLLQKTTLQKLHIWGGCPIF 743 (767)
Q Consensus 665 ~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-lp~~~~~l~sL~~L~l~~~c~~l 743 (767)
.++|.|++|.|++|..+++-.+.... ..-..+..|..|.+.+||.++. .-..+..+++|+.+++ .+|..+
T Consensus 369 -------~~C~~lr~lslshce~itD~gi~~l~-~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l-~~~q~v 439 (483)
T KOG4341|consen 369 -------RNCPRLRVLSLSHCELITDEGIRHLS-SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIEL-IDCQDV 439 (483)
T ss_pred -------cCCchhccCChhhhhhhhhhhhhhhh-hccccccccceeeecCCCCchHHHHHHHhhCcccceeee-echhhh
Confidence 38999999999998766544211000 0124677899999999988763 3355677889999999 899887
Q ss_pred HHhhcccCCCCCCcccccCcceeC
Q 035555 744 RERYREETGEDWPKIRHIPNIEIE 767 (767)
Q Consensus 744 ~~~~~~~~~~~~~~i~hip~i~i~ 767 (767)
++.-.. +-..|.|+++++
T Consensus 440 tk~~i~------~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 440 TKEAIS------RFATHLPNIKVH 457 (483)
T ss_pred hhhhhH------HHHhhCccceeh
Confidence 664332 344678877763
No 42
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.68 E-value=1.4e-06 Score=96.87 Aligned_cols=193 Identities=12% Similarity=0.102 Sum_probs=119.8
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhh---h-HHHHHHHHHHH----
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILR---K-EYGIARAIIEA---- 167 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~-~~~i~~~i~~~---- 167 (767)
-.++||.+..++.|..++.... -...+.++|..|+||||+|+.+.+...-...+. + .....+.|...
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~D 89 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVD 89 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCce
Confidence 3578999999999999986432 345667999999999999998876321110010 0 11222222110
Q ss_pred -hhCCCCCccchHHHHHHHHHh----cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCch-hHH-hhhcC
Q 035555 168 -LTYSSSNFVEFQSLMQHIQKH----VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKE-TVA-RIMGS 240 (767)
Q Consensus 168 -l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~-~~~~~ 240 (767)
+..........+++.+.+... ..++.-++|||++.......|..++..+.......++|+||++. .+. ...+.
T Consensus 90 viEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSR 169 (830)
T PRK07003 90 YVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 (830)
T ss_pred EEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhh
Confidence 000011112233333333221 13455689999998887788888888887766677878777763 332 33445
Q ss_pred cceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCc-chHHHHHh
Q 035555 241 ADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLP-LVAKTIAS 297 (767)
Q Consensus 241 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~ 297 (767)
+..+.+..++.++..+.+.+.....+... ..+..+.|++.++|.. -|+..+-.
T Consensus 170 Cq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i----d~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 170 CLQFNLKQMPAGHIVSHLERILGEERIAF----EPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred eEEEecCCcCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 77999999999999999887653322211 2344778999998855 46555443
No 43
>PRK06893 DNA replication initiation factor; Validated
Probab=98.68 E-value=3.8e-07 Score=90.33 Aligned_cols=151 Identities=13% Similarity=0.147 Sum_probs=88.6
Q ss_pred CEEEEEEccCCChHHHHHHHHHcccch---hhhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeC
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNNDDV---KKILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDD 200 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~~~---~~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDd 200 (767)
.+.+.|+|++|+|||+||+++++.... +..|-.... .......+.+.+. +.-+||+||
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~------------------~~~~~~~~~~~~~-~~dlLilDD 99 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK------------------SQYFSPAVLENLE-QQDLVCLDD 99 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH------------------hhhhhHHHHhhcc-cCCEEEEeC
Confidence 357899999999999999999984211 111111100 0001111112222 234899999
Q ss_pred CCCcC-hhhHHH-HHHhhhcC-CCCcEEEE-EcCc---------hhHHhhhcCcceEecCCCChhHHHHHHHHhcCCCCC
Q 035555 201 VWNED-FYKWEQ-FYNCLKTC-LHGSKILI-TTRK---------ETVARIMGSADIISVNVLSETECWLVFESLGFSGKS 267 (767)
Q Consensus 201 v~~~~-~~~~~~-l~~~l~~~-~~gs~ilv-TtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~ 267 (767)
+|... ...|.. +...+... ..|..++| |++. +++...+.....+++++++.++.++++.+.+.....
T Consensus 100 i~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l 179 (229)
T PRK06893 100 LQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGI 179 (229)
T ss_pred hhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 98632 244553 44434322 23555554 4543 355566666778999999999999999988754332
Q ss_pred CcchhhHHHHHHHHHhhcCCCcchHHHHHh
Q 035555 268 MEERENLEKIGREIIRKCKGLPLVAKTIAS 297 (767)
Q Consensus 268 ~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 297 (767)
.. -+++..-|++.+.|..-++..+-.
T Consensus 180 ~l----~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 180 EL----SDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred CC----CHHHHHHHHHhccCCHHHHHHHHH
Confidence 11 234467788888876655544433
No 44
>PTZ00202 tuzin; Provisional
Probab=98.61 E-value=8.8e-06 Score=84.34 Aligned_cols=168 Identities=17% Similarity=0.201 Sum_probs=104.7
Q ss_pred cCCCCCCCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhh---hHHHHHHHHH
Q 035555 89 PSISSIDESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILR---KEYGIARAII 165 (767)
Q Consensus 89 ~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~~i~~~i~ 165 (767)
....|.+.+.|+||++++..+.+.|...+. ...+++.|+|++|+|||||++.+......-..|- ...++++.++
T Consensus 254 ~~~lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg~eElLr~LL 330 (550)
T PTZ00202 254 LQSAPAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRGTEDTLRSVV 330 (550)
T ss_pred ccCCCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCCHHHHHHHHH
Confidence 345566788999999999999999975432 2456999999999999999999887533111111 2688999999
Q ss_pred HHhhCCCCCccchHHHHHHHHHhc-----C-CCeEEEEEeCCCCcCh-hhHHHHHHhhhcCCCCcEEEEEcCchhHHhh-
Q 035555 166 EALTYSSSNFVEFQSLMQHIQKHV-----A-GKKLLLVLDDVWNEDF-YKWEQFYNCLKTCLHGSKILITTRKETVARI- 237 (767)
Q Consensus 166 ~~l~~~~~~~~~~~~~~~~l~~~l-----~-~k~~LlVlDdv~~~~~-~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~- 237 (767)
..++.+... ...++.+.|.+.+ . +++.+||+-==...+. -.+.+. ..+.....-|+|++----+.+.-.
T Consensus 331 ~ALGV~p~~--~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt~~~ 407 (550)
T PTZ00202 331 KALGVPNVE--ACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTIAN 407 (550)
T ss_pred HHcCCCCcc--cHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcchhc
Confidence 999973322 2233444444333 2 6677777642211111 112222 223333456788775443332211
Q ss_pred --hcCcceEecCCCChhHHHHHHHHhc
Q 035555 238 --MGSADIISVNVLSETECWLVFESLG 262 (767)
Q Consensus 238 --~~~~~~~~l~~L~~~~~~~l~~~~~ 262 (767)
...-..|-+++++.++|.++-.+..
T Consensus 408 ~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 408 TLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred ccCccceeEecCCCCHHHHHHHHhhcc
Confidence 1224688999999999998877653
No 45
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.60 E-value=1.7e-08 Score=93.73 Aligned_cols=129 Identities=19% Similarity=0.201 Sum_probs=49.6
Q ss_pred hccCCCCcCceEEEecCCccCCcccc-CCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCC
Q 035555 588 ELEKKKNLFDLELRFDCNVIPKNWIM-SLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDT 666 (767)
Q Consensus 588 ~l~~~~~L~~L~l~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 666 (767)
.+.+..+++.|+|++|.+..+. .++ .+.+|+.|++++| .++.++.+..++.|+.|++++|. ++.++..+.
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~------ 84 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSNNR-ISSISEGLD------ 84 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHH------
T ss_pred cccccccccccccccccccccc-chhhhhcCCCEEECCCC-CCccccCccChhhhhhcccCCCC-CCccccchH------
Confidence 3445567888999988876654 355 5789999999987 66778888889999999999987 666643221
Q ss_pred CCccccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCccccCCC----cCCCCCCCCcEEEe
Q 035555 667 NGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALP----DLLLQKTTLQKLHI 736 (767)
Q Consensus 667 ~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp----~~~~~l~sL~~L~l 736 (767)
..||+|++|++++| .+.++.. -..+..+|+|+.|++.+||--. -+ ..+..+|+|+.|+-
T Consensus 85 -----~~lp~L~~L~L~~N-~I~~l~~----l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 85 -----KNLPNLQELYLSNN-KISDLNE----LEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -----HH-TT--EEE-TTS----SCCC----CGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETT
T ss_pred -----HhCCcCCEEECcCC-cCCChHH----hHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCC
Confidence 26899999999988 5666542 1245689999999999997533 33 22445788888875
No 46
>PRK04195 replication factor C large subunit; Provisional
Probab=98.56 E-value=6e-06 Score=91.48 Aligned_cols=245 Identities=15% Similarity=0.125 Sum_probs=133.7
Q ss_pred CCCCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhh-hhhh----HHHHHHHHHHH
Q 035555 93 SIDESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKK-ILRK----EYGIARAIIEA 167 (767)
Q Consensus 93 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~----~~~i~~~i~~~ 167 (767)
|..-.+++|+++.++++.+|+..... +...+.+.|+|++|+||||+|++++++....- .+.. .......++..
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~ 87 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGE 87 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHH
Confidence 33455799999999999999865321 12367899999999999999999988532100 0000 00111111111
Q ss_pred hhCCCCCccchHHHHHHHHHhcC-CCeEEEEEeCCCCcCh----hhHHHHHHhhhcCCCCcEEEEEcCch-hHH--hhhc
Q 035555 168 LTYSSSNFVEFQSLMQHIQKHVA-GKKLLLVLDDVWNEDF----YKWEQFYNCLKTCLHGSKILITTRKE-TVA--RIMG 239 (767)
Q Consensus 168 l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~--~~~~ 239 (767)
.... ..+. .++-+||+|+++.... ..+..+...+.. .+..||+|+.+. ... ....
T Consensus 88 ~~~~---------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrs 150 (482)
T PRK04195 88 AATS---------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRN 150 (482)
T ss_pred hhcc---------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhc
Confidence 1000 0111 2678999999975422 345566666653 234466666442 221 1223
Q ss_pred CcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHHhHHhcC-C--CHHHHHHHHhhhc
Q 035555 240 SADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIASLLRSK-N--TEKEWQNILESEI 316 (767)
Q Consensus 240 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~-~--~~~~w~~~~~~~~ 316 (767)
....+.+.+++.++....+.+.+...+.... .++...|++.++|..-.+......+... . +.+.-..+..
T Consensus 151 r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~--- 223 (482)
T PRK04195 151 ACLMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR--- 223 (482)
T ss_pred cceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc---
Confidence 4678999999999998888876543332222 3457788899988765554333333222 1 2332222221
Q ss_pred ccchhhhhhhhhhHHhhcc-cCCHHHHHHHHHhccCCCCcccChHHHHHHHHHcCCccC
Q 035555 317 WEIEEVEKNLLAPLLLSYN-ELPSKVKQCFTYCAIFPKNSKIWKDKLIELWMAQGFLNN 374 (767)
Q Consensus 317 ~~~~~~~~~i~~~l~~sy~-~L~~~~k~~f~~~s~fp~~~~i~~~~li~~w~a~g~~~~ 374 (767)
.....+++.++..-+. .-+......+.. ..++. ..+-.|+.+.+...
T Consensus 224 ---~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 ---RDREESIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred ---CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhccccc
Confidence 1122345555554443 222233332221 12233 34678898888764
No 47
>PLN03025 replication factor C subunit; Provisional
Probab=98.56 E-value=7.8e-07 Score=93.08 Aligned_cols=177 Identities=16% Similarity=0.086 Sum_probs=106.0
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCC
Q 035555 95 DESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSN 174 (767)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~ 174 (767)
.-.+++|.++.++.|.+++... ..+.+.++|++|+||||+|+.+++... ...|.. . .+..+...
T Consensus 11 ~l~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~------~---~~eln~sd 74 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELL-GPNYKE------A---VLELNASD 74 (319)
T ss_pred CHHHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHh-cccCcc------c---eeeecccc
Confidence 3457899999999988877543 334577999999999999999887310 111110 0 00001111
Q ss_pred ccchHHHHHHHHHhc-------CCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCch-hH-HhhhcCcceEe
Q 035555 175 FVEFQSLMQHIQKHV-------AGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKE-TV-ARIMGSADIIS 245 (767)
Q Consensus 175 ~~~~~~~~~~l~~~l-------~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v-~~~~~~~~~~~ 245 (767)
....+.+...+.... .++.-++|+|+++.........+...+......+++++++... .+ .........++
T Consensus 75 ~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~ 154 (319)
T PLN03025 75 DRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVR 154 (319)
T ss_pred cccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhccc
Confidence 111222222222211 2456799999998776666666766666555667777766542 22 12223356889
Q ss_pred cCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcch
Q 035555 246 VNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLV 291 (767)
Q Consensus 246 l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 291 (767)
+.+++.++....+...+-..+..-. .+....|++.++|..-.
T Consensus 155 f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 155 FSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQ 196 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 9999999998888876633222111 23467788888876633
No 48
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.55 E-value=4.9e-09 Score=109.63 Aligned_cols=145 Identities=29% Similarity=0.332 Sum_probs=101.0
Q ss_pred cCCCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCccccc
Q 035555 452 DNYIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLP 531 (767)
Q Consensus 452 l~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp 531 (767)
.+.+..+|..++++..|.||+|+.|. +..+|..+|.|+ |+.|-+++|+ +..+|..++.+..|.+|+.+.| .+..+|
T Consensus 107 ~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~n-ei~slp 182 (722)
T KOG0532|consen 107 HNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKN-EIQSLP 182 (722)
T ss_pred hccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhh-hhhhch
Confidence 33667788999999999999999998 888888888874 8899999887 8889999998888999999888 788888
Q ss_pred ccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCCc
Q 035555 532 VGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPKN 610 (767)
Q Consensus 532 ~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~ 610 (767)
..++.+.+|+.|.+..+.... .+.++..|+ |..|+++. .+ ...++..+.+|++|++|-|..|+...+|.
T Consensus 183 sql~~l~slr~l~vrRn~l~~----lp~El~~Lp-Li~lDfSc-Nk----is~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 183 SQLGYLTSLRDLNVRRNHLED----LPEELCSLP-LIRLDFSC-NK----ISYLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred HHhhhHHHHHHHHHhhhhhhh----CCHHHhCCc-eeeeeccc-Cc----eeecchhhhhhhhheeeeeccCCCCCChH
Confidence 888888888888765544432 344554443 33333332 11 11223444555555555555555554444
No 49
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=1.3e-06 Score=92.88 Aligned_cols=186 Identities=15% Similarity=0.176 Sum_probs=111.9
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhh---h-HHHHHHHHHHHhh--
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILR---K-EYGIARAIIEALT-- 169 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~-~~~i~~~i~~~l~-- 169 (767)
-.+++|.+..++.+...+.... -...+.++|+.|+||||+|+.+.+...-..... + ......++.....
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d 89 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLD 89 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCc
Confidence 3578999999999998886532 345678999999999999999977421000000 0 0011111111100
Q ss_pred ---CCCCCccchHHHHHHHHHhc-----CCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCc-hhHHh-hhc
Q 035555 170 ---YSSSNFVEFQSLMQHIQKHV-----AGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRK-ETVAR-IMG 239 (767)
Q Consensus 170 ---~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~-~~~ 239 (767)
.........+++. .+.+.+ .+++-++|+|++.......++.+...+.......++|++|.+ ..+.. ..+
T Consensus 90 ~~~~~~~~~~~v~~ir-~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~S 168 (363)
T PRK14961 90 LIEIDAASRTKVEEMR-EILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILS 168 (363)
T ss_pred eEEecccccCCHHHHH-HHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHh
Confidence 0000011222222 222222 245569999999877666778888888776666667776654 33332 233
Q ss_pred CcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcch
Q 035555 240 SADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLV 291 (767)
Q Consensus 240 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 291 (767)
....+++.+++.++..+.+...+-..+... .++.+..|++.++|.|-.
T Consensus 169 Rc~~~~~~~l~~~el~~~L~~~~~~~g~~i----~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 169 RCLQFKLKIISEEKIFNFLKYILIKESIDT----DEYALKLIAYHAHGSMRD 216 (363)
T ss_pred hceEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHH
Confidence 467899999999999988887553222111 123467789999998753
No 50
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.54 E-value=7.8e-07 Score=101.39 Aligned_cols=173 Identities=15% Similarity=0.233 Sum_probs=99.8
Q ss_pred CCccccchhHHH---HHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCC
Q 035555 96 ESEIFGREKEKS---ELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSS 172 (767)
Q Consensus 96 ~~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~ 172 (767)
-.+|+|++..+. .+.+.+... ....+.++|++|+||||||+.+++. ....|........
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~~------~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~~lna~~~---------- 88 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKAD------RVGSLILYGPPGVGKTTLARIIANH--TRAHFSSLNAVLA---------- 88 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH--hcCcceeehhhhh----------
Confidence 356899998875 455555432 4456789999999999999999984 3344432111100
Q ss_pred CCccchHHHHHHHHHhc--CCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEE--cCchh--HH-hhhcCcceEe
Q 035555 173 SNFVEFQSLMQHIQKHV--AGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILIT--TRKET--VA-RIMGSADIIS 245 (767)
Q Consensus 173 ~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT--tR~~~--v~-~~~~~~~~~~ 245 (767)
...+..+........+ .+++.+|||||++.-+...++.+...+. .|+.++|+ |.+.. +. ........+.
T Consensus 89 -~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~ 164 (725)
T PRK13341 89 -GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFR 164 (725)
T ss_pred -hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhcccccee
Confidence 0111222222222222 2467799999997766556666665544 35656654 33321 11 1222356899
Q ss_pred cCCCChhHHHHHHHHhcCCCCC---CcchhhHHHHHHHHHhhcCCCcc
Q 035555 246 VNVLSETECWLVFESLGFSGKS---MEERENLEKIGREIIRKCKGLPL 290 (767)
Q Consensus 246 l~~L~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~g~PL 290 (767)
+++++.++...++.+.+-.... .....-.++....|++.+.|..-
T Consensus 165 l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 165 LKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 9999999999998876531000 00011123446778888877643
No 51
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.54 E-value=1.9e-06 Score=91.62 Aligned_cols=188 Identities=12% Similarity=0.016 Sum_probs=106.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchh---hhhhh--HHHHHHHHHHHhhC
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVK---KILRK--EYGIARAIIEALTY 170 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~--~~~i~~~i~~~l~~ 170 (767)
-.+++|++..++.+.+++... ..+.+.++|++|+||||+|+.+.+...-. ..|-. ..+........+..
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhc
Confidence 357899999999999988643 33457899999999999999987632100 01100 11111110011100
Q ss_pred CC-----------CCccchHHHHHHHH---Hhc--CCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCch-h
Q 035555 171 SS-----------SNFVEFQSLMQHIQ---KHV--AGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKE-T 233 (767)
Q Consensus 171 ~~-----------~~~~~~~~~~~~l~---~~l--~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~ 233 (767)
.. ......+.....+. ... .+.+-++|+||+..........+...+......+++|+||... .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 00 00001111222121 111 1345589999997655445556666666555567788777542 2
Q ss_pred HH-hhhcCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHH
Q 035555 234 VA-RIMGSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAK 293 (767)
Q Consensus 234 v~-~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 293 (767)
+. ........+.+.+++.++...++.+.+...+.... .+..+.+++.++|.+-.+.
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~----~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD----DDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 21 22233567889999999999888876533222111 3457778888888765543
No 52
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.53 E-value=1.5e-06 Score=86.57 Aligned_cols=168 Identities=17% Similarity=0.121 Sum_probs=95.0
Q ss_pred chhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchh-hh--hhhHHHHHHHHHHHhhCCCCCccch
Q 035555 102 REKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVK-KI--LRKEYGIARAIIEALTYSSSNFVEF 178 (767)
Q Consensus 102 r~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~-~~--F~~~~~i~~~i~~~l~~~~~~~~~~ 178 (767)
.+..++.+.+++... ....|.|+|++|+|||+||+++++..... .. |-....+....
T Consensus 22 ~~~~~~~l~~~~~~~------~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~-------------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGK------GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD-------------- 81 (226)
T ss_pred cHHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------------
Confidence 455677777775422 45689999999999999999998742100 00 10011111100
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCcChh-h-HHHHHHhhhcC-CCCcEEEEEcCchh---------HHhhhcCcceEec
Q 035555 179 QSLMQHIQKHVAGKKLLLVLDDVWNEDFY-K-WEQFYNCLKTC-LHGSKILITTRKET---------VARIMGSADIISV 246 (767)
Q Consensus 179 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-~-~~~l~~~l~~~-~~gs~ilvTtR~~~---------v~~~~~~~~~~~l 246 (767)
. .+...+.+ .-+||+||++..... . ...+...+... ..+.++|+||+... +...+.....+++
T Consensus 82 ~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l 156 (226)
T TIGR03420 82 P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQL 156 (226)
T ss_pred H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEec
Confidence 0 11122222 238999999654322 2 23344444321 23447888887532 1222333468899
Q ss_pred CCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHHhH
Q 035555 247 NVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIASL 298 (767)
Q Consensus 247 ~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 298 (767)
++++.++...++...+-...... -.+..+.+++.+.|.|..+..+...
T Consensus 157 ~~l~~~e~~~~l~~~~~~~~~~~----~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 157 PPLSDEEKIAALQSRAARRGLQL----PDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHhccCCHHHHHHHHHH
Confidence 99999999998886542222111 1234566777888888777655433
No 53
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=2e-06 Score=94.51 Aligned_cols=188 Identities=13% Similarity=0.121 Sum_probs=115.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhh---h-HHHHHHHHHHHhh--
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILR---K-EYGIARAIIEALT-- 169 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~-~~~i~~~i~~~l~-- 169 (767)
-.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++...-....+ + .....+.+...-.
T Consensus 14 FddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpD 88 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFID 88 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCc
Confidence 3578999999999999987542 346789999999999999998876311100000 0 1111111111000
Q ss_pred ---CCCCCccchHHHHHHHHHh----cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCch-hH-HhhhcC
Q 035555 170 ---YSSSNFVEFQSLMQHIQKH----VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKE-TV-ARIMGS 240 (767)
Q Consensus 170 ---~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v-~~~~~~ 240 (767)
.........+++.+.+... ..++.-++|+|+|...+......+...+.....+.++|++|.+. .+ ......
T Consensus 89 viEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSR 168 (702)
T PRK14960 89 LIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 (702)
T ss_pred eEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHh
Confidence 0000011233332222211 23566789999998777777888888887765666777777652 22 233355
Q ss_pred cceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchH
Q 035555 241 ADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVA 292 (767)
Q Consensus 241 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 292 (767)
+..+++.+++.++..+.+.+.+-..+.... .+....|++.++|.+-.+
T Consensus 169 Cq~feFkpLs~eEI~k~L~~Il~kEgI~id----~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 169 CLQFTLRPLAVDEITKHLGAILEKEQIAAD----QDAIWQIAESAQGSLRDA 216 (702)
T ss_pred hheeeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 779999999999999988876533322222 234677889999877443
No 54
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.52 E-value=9.7e-09 Score=107.47 Aligned_cols=183 Identities=23% Similarity=0.231 Sum_probs=142.9
Q ss_pred cCCCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCccccc
Q 035555 452 DNYIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLP 531 (767)
Q Consensus 452 l~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp 531 (767)
.+.+.++|..++.+..|..+.|..|. +..+|..++++..|.+|||+.|. +..+|..++.|+ |+.|-+++| +++.+|
T Consensus 84 rNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNN-kl~~lp 159 (722)
T KOG0532|consen 84 RNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNN-KLTSLP 159 (722)
T ss_pred ccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecC-ccccCC
Confidence 33567899999999999999999998 99999999999999999999998 999999998887 888988887 889999
Q ss_pred ccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCCcc
Q 035555 532 VGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPKNW 611 (767)
Q Consensus 532 ~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~ 611 (767)
..++.+..|..|+...+... ....++..+..|+.|.+... .-...+..+. .-.|..|+++.|+...+|--
T Consensus 160 ~~ig~~~tl~~ld~s~nei~----slpsql~~l~slr~l~vrRn-----~l~~lp~El~-~LpLi~lDfScNkis~iPv~ 229 (722)
T KOG0532|consen 160 EEIGLLPTLAHLDVSKNEIQ----SLPSQLGYLTSLRDLNVRRN-----HLEDLPEELC-SLPLIRLDFSCNKISYLPVD 229 (722)
T ss_pred cccccchhHHHhhhhhhhhh----hchHHhhhHHHHHHHHHhhh-----hhhhCCHHHh-CCceeeeecccCceeecchh
Confidence 99998888888876655543 35677777777777766541 1112233444 34688999999999999998
Q ss_pred ccCCCCccEEEEeccCCCCCCCC----CCCCCCCCeeeecCC
Q 035555 612 IMSLTNLRYLSLSLFKNCEQLLP----LGKLQSLEYLQIGGM 649 (767)
Q Consensus 612 ~~~l~~L~~L~L~~~~~~~~l~~----l~~l~~L~~L~L~~~ 649 (767)
|..|+.|++|-|.+| -+.+.|. -|..-=.+||+..-|
T Consensus 230 fr~m~~Lq~l~LenN-PLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENN-PLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhheeeeeccC-CCCCChHHHHhccceeeeeeecchhc
Confidence 999999999999966 4454443 233444567777666
No 55
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.48 E-value=9.2e-08 Score=104.03 Aligned_cols=171 Identities=32% Similarity=0.279 Sum_probs=112.8
Q ss_pred ceeeeeccC--CCcccccccccCC-cccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeC
Q 035555 445 KCRRWRCDN--YIKEIPTNIEKLI-HLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDN 521 (767)
Q Consensus 445 ~~L~~l~l~--~~~~lp~~~~~l~-~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l 521 (767)
+.+..|++. .+..+|...+.+. +|+.|++++|. +..+|..+..+++|+.|++++|. +..+|...+.+++|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheec
Confidence 456666655 5667777777774 88888888888 77777667888888888888887 7777776667788888888
Q ss_pred CCCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEE
Q 035555 522 DYTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELR 601 (767)
Q Consensus 522 ~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 601 (767)
++| .+..+|..++.+..|+.|.+..+... ..+.. +.++.++..+.+.
T Consensus 194 s~N-~i~~l~~~~~~~~~L~~l~~~~N~~~----~~~~~----------------------------~~~~~~l~~l~l~ 240 (394)
T COG4886 194 SGN-KISDLPPEIELLSALEELDLSNNSII----ELLSS----------------------------LSNLKNLSGLELS 240 (394)
T ss_pred cCC-ccccCchhhhhhhhhhhhhhcCCcce----ecchh----------------------------hhhcccccccccC
Confidence 887 67777766555555666644333211 11122 2233334444444
Q ss_pred ecCCccCCccccCCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCCC
Q 035555 602 FDCNVIPKNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHG 651 (767)
Q Consensus 602 ~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~ 651 (767)
.|....++..+..+++|+.|++++| .+..++.++.+.+|++|+++++..
T Consensus 241 ~n~~~~~~~~~~~l~~l~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 241 NNKLEDLPESIGNLSNLETLDLSNN-QISSISSLGSLTNLRELDLSGNSL 289 (394)
T ss_pred Cceeeeccchhccccccceeccccc-cccccccccccCccCEEeccCccc
Confidence 4444444666677777888888765 555666677788888888887663
No 56
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=2.9e-06 Score=94.18 Aligned_cols=195 Identities=14% Similarity=0.110 Sum_probs=114.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhh---hh-HHHHHHHHHHH----
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKIL---RK-EYGIARAIIEA---- 167 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~-~~~i~~~i~~~---- 167 (767)
-.++||.+..++.|..++.... -.+.+.++|+.|+||||+|+.+.+...-.... .+ .....+.+...
T Consensus 15 FddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~D 89 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVD 89 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccc
Confidence 3579999999999999987542 34678999999999999999887631100000 00 01111111110
Q ss_pred -hhCCCCCccchHHHHHHHHHh----cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCc-hhHH-hhhcC
Q 035555 168 -LTYSSSNFVEFQSLMQHIQKH----VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRK-ETVA-RIMGS 240 (767)
Q Consensus 168 -l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~-~~~~~ 240 (767)
+..........+++.+.+... ..+++-++|+|++..........++..+......+++|++|.+ ..+. ...+.
T Consensus 90 vlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSR 169 (709)
T PRK08691 90 LLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 (709)
T ss_pred eEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHH
Confidence 000001111222222222211 1356679999999776666677788887765555666666654 3222 22344
Q ss_pred cceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcch-HHHHHhHH
Q 035555 241 ADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLV-AKTIASLL 299 (767)
Q Consensus 241 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa-i~~~~~~l 299 (767)
+..+.+.+++.++....+.+.+-..+... ..+....|++.++|.+.- +..+-..+
T Consensus 170 C~~f~f~~Ls~eeI~~~L~~Il~kEgi~i----d~eAL~~Ia~~A~GslRdAlnLLDqai 225 (709)
T PRK08691 170 CLQFVLRNMTAQQVADHLAHVLDSEKIAY----EPPALQLLGRAAAGSMRDALSLLDQAI 225 (709)
T ss_pred HhhhhcCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 56788899999999998887653332211 223477899999888744 34443333
No 57
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=1.6e-06 Score=95.22 Aligned_cols=194 Identities=15% Similarity=0.136 Sum_probs=115.9
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhh--h-HHHHHHHHHHH------
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILR--K-EYGIARAIIEA------ 167 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~-~~~i~~~i~~~------ 167 (767)
.+++|.+..++.|..++.... -...+.++|++|+||||+|+.+++...-...+. + ...-...+...
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~ 88 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL 88 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE
Confidence 468999999999988886542 345679999999999999999877422111111 0 00111111110
Q ss_pred -hhCC-CCCccchHHHHHHHHH-hcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCc-hhHHhh-hcCcc
Q 035555 168 -LTYS-SSNFVEFQSLMQHIQK-HVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRK-ETVARI-MGSAD 242 (767)
Q Consensus 168 -l~~~-~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~-~~~~~ 242 (767)
+... .....+..++...+.. -..+++-++|+|+++......+..+...+......+.+|++|.. ..+... .....
T Consensus 89 el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~ 168 (504)
T PRK14963 89 EIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQ 168 (504)
T ss_pred EecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceE
Confidence 0000 0111112222222221 12346679999999877777788888888776555555555543 333322 23467
Q ss_pred eEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcc-hHHHHHhHH
Q 035555 243 IISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPL-VAKTIASLL 299 (767)
Q Consensus 243 ~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~~l 299 (767)
.+++.+++.++..+.+.+.+-..+... ..+.+..|++.++|.+- |+..+-..+
T Consensus 169 ~~~f~~ls~~el~~~L~~i~~~egi~i----~~~Al~~ia~~s~GdlR~aln~Lekl~ 222 (504)
T PRK14963 169 HFRFRRLTEEEIAGKLRRLLEAEGREA----EPEALQLVARLADGAMRDAESLLERLL 222 (504)
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 899999999999999988763332211 23447789999999885 444443433
No 58
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=1.9e-06 Score=97.75 Aligned_cols=191 Identities=13% Similarity=0.130 Sum_probs=117.7
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhh---hh-HHHHHHHHHHH----
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKIL---RK-EYGIARAIIEA---- 167 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~-~~~i~~~i~~~---- 167 (767)
-.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++...-.... .+ ...-...|...
T Consensus 15 FddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~D 89 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVD 89 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCce
Confidence 3579999999999998886532 34556899999999999999998742111000 00 11111111111
Q ss_pred ---hhCC-CCCccchHHHHHHHHH-hcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCc-hhHH-hhhcC
Q 035555 168 ---LTYS-SSNFVEFQSLMQHIQK-HVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRK-ETVA-RIMGS 240 (767)
Q Consensus 168 ---l~~~-~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~-~~~~~ 240 (767)
+... .....+..++...+.. -..+++-++|||++.......+..++..+.......++|++|.+ ..+. .....
T Consensus 90 viEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSR 169 (944)
T PRK14949 90 LIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 (944)
T ss_pred EEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHh
Confidence 0000 0111222333333221 12467789999999888878888888888776556666666554 3333 33444
Q ss_pred cceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcc-hHHHH
Q 035555 241 ADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPL-VAKTI 295 (767)
Q Consensus 241 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 295 (767)
+..+.+.+++.++..+++.+.+-...... ..+.+..|++.++|.|- |+..+
T Consensus 170 Cq~f~fkpLs~eEI~~~L~~il~~EgI~~----edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 170 CLQFNLKSLTQDEIGTQLNHILTQEQLPF----EAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred heEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 67999999999999999887653222111 23447789999999885 44443
No 59
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=2.7e-06 Score=93.26 Aligned_cols=189 Identities=13% Similarity=0.121 Sum_probs=115.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchh----hh-h---hh-HHHHHHHHHH
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVK----KI-L---RK-EYGIARAIIE 166 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~----~~-F---~~-~~~i~~~i~~ 166 (767)
-.++||.+..++.|.+.+.... -...+.++|..|+||||+|+.+.+...-. .. . .+ .....+.|..
T Consensus 15 FddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~a 89 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDA 89 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHc
Confidence 3579999999999999997542 34567899999999999999887631110 00 0 00 1111111111
Q ss_pred H-----hhCCCCCccchHHHHHHHHHh----cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEE-cCchhHH-
Q 035555 167 A-----LTYSSSNFVEFQSLMQHIQKH----VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILIT-TRKETVA- 235 (767)
Q Consensus 167 ~-----l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT-tR~~~v~- 235 (767)
. +..........+++.+.+... ..++.-++|+|++...+...+..++..+..-...+.+|++ |....+.
T Consensus 90 G~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 90 GRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhh
Confidence 0 000000112233333333221 2456679999999888878888888888765555665554 4444443
Q ss_pred hhhcCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHH
Q 035555 236 RIMGSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAK 293 (767)
Q Consensus 236 ~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 293 (767)
...+.+..+.+..++.++..+.+.+.+...+... ..+..+.|++.++|.|....
T Consensus 170 TIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~----d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 170 TVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH----EVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 3344577999999999999998886653222111 12346779999999886443
No 60
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=1.7e-06 Score=92.40 Aligned_cols=187 Identities=14% Similarity=0.075 Sum_probs=112.8
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhh--hh-hh-HHHHHHHHHHHhhC-
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKK--IL-RK-EYGIARAIIEALTY- 170 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~--~F-~~-~~~i~~~i~~~l~~- 170 (767)
-.+++|.+..+..|..++.... -...+.++|+.|+||||+|+.+++...-.. .+ .+ ...-...+......
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~d 91 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSD 91 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCcc
Confidence 3578999999999999887542 234688999999999999999977411100 00 00 00011111111100
Q ss_pred -------CCCCccchHHHHHHHHHh-cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEE-EcCchhHH-hhhcC
Q 035555 171 -------SSSNFVEFQSLMQHIQKH-VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILI-TTRKETVA-RIMGS 240 (767)
Q Consensus 171 -------~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~-~~~~~ 240 (767)
......+..++.+.+... ..++.-++|+|++.......+..++..+........+|+ ||....+. .....
T Consensus 92 viEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SR 171 (484)
T PRK14956 92 VLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSR 171 (484)
T ss_pred ceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhh
Confidence 001112222333333221 235667999999988877888888888866444454444 44444442 33444
Q ss_pred cceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcch
Q 035555 241 ADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLV 291 (767)
Q Consensus 241 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 291 (767)
+..|.+.+++.++..+.+.+.+-..+... ..+....|++.++|.+--
T Consensus 172 Cq~~~f~~ls~~~i~~~L~~i~~~Egi~~----e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 172 CQDFIFKKVPLSVLQDYSEKLCKIENVQY----DQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred hheeeecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCChHHH
Confidence 67899999999999888887653322211 234578899999998843
No 61
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.41 E-value=5.1e-07 Score=86.72 Aligned_cols=47 Identities=30% Similarity=0.427 Sum_probs=31.7
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 98 EIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.|+||+++++++...|. .. .....+.+.|+|++|+|||+|.++++..
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~--~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AA--QSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GT--SS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HH--HcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999995 22 2345689999999999999999988764
No 62
>PRK09087 hypothetical protein; Validated
Probab=98.41 E-value=1.1e-05 Score=79.27 Aligned_cols=141 Identities=16% Similarity=0.181 Sum_probs=85.2
Q ss_pred CEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCC
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWN 203 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 203 (767)
.+.+.|+|+.|+|||+|++.+++... ..|-....+...+.. .+.+ -+|++||+..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~--~~~i~~~~~~~~~~~---------------------~~~~--~~l~iDDi~~ 98 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD--ALLIHPNEIGSDAAN---------------------AAAE--GPVLIEDIDA 98 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC--CEEecHHHcchHHHH---------------------hhhc--CeEEEECCCC
Confidence 45789999999999999999887421 111111111111111 1111 2788899954
Q ss_pred cChhhHHHHHHhhhcC-CCCcEEEEEcCc---------hhHHhhhcCcceEecCCCChhHHHHHHHHhcCCCCCCcchhh
Q 035555 204 EDFYKWEQFYNCLKTC-LHGSKILITTRK---------ETVARIMGSADIISVNVLSETECWLVFESLGFSGKSMEEREN 273 (767)
Q Consensus 204 ~~~~~~~~l~~~l~~~-~~gs~ilvTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~ 273 (767)
.. ..-+.+...+... ..|..||+|++. ++....+.....+++++++.++-.+++.+.+-.... . -
T Consensus 99 ~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~-~---l 173 (226)
T PRK09087 99 GG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQL-Y---V 173 (226)
T ss_pred CC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCC-C---C
Confidence 21 1112233333322 236679998873 344455566789999999999999999988743221 1 1
Q ss_pred HHHHHHHHHhhcCCCcchHHH
Q 035555 274 LEKIGREIIRKCKGLPLVAKT 294 (767)
Q Consensus 274 ~~~~~~~i~~~~~g~PLai~~ 294 (767)
-+++..-|++.+.|..-++..
T Consensus 174 ~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 174 DPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred CHHHHHHHHHHhhhhHHHHHH
Confidence 234567788877777766654
No 63
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=1.8e-06 Score=94.28 Aligned_cols=188 Identities=16% Similarity=0.150 Sum_probs=114.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhh------hh-h-HHHHHHHHHHH
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKI------LR-K-EYGIARAIIEA 167 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~------F~-~-~~~i~~~i~~~ 167 (767)
-.+++|.+..++.|...+.... -...+.++|+.|+||||+|+.+++...-... +. + ...-...+...
T Consensus 20 f~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~ 94 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNH 94 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcC
Confidence 3468999999999988776432 3457889999999999999999774211000 00 0 01111111110
Q ss_pred hhC-----CCCCccchHHHHHHHHHh----cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEE-EcCchhHHhh
Q 035555 168 LTY-----SSSNFVEFQSLMQHIQKH----VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILI-TTRKETVARI 237 (767)
Q Consensus 168 l~~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~~~ 237 (767)
... ........+++...+... ..+++-++|+|+++......|..+...+....+.+.+|+ ||+...+...
T Consensus 95 ~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 95 NHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHH
Confidence 000 000111223333322221 235677899999988777888889888887656666554 5444444332
Q ss_pred -hcCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchH
Q 035555 238 -MGSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVA 292 (767)
Q Consensus 238 -~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 292 (767)
......+++.+++.++....+...+-..+...+ .+....|++.++|.+--+
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie----~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD----IEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 334668999999999999999877643332111 234667888998876433
No 64
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.39 E-value=6.2e-06 Score=86.90 Aligned_cols=178 Identities=13% Similarity=0.085 Sum_probs=106.0
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCC
Q 035555 95 DESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSN 174 (767)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~ 174 (767)
.-.+++|+++.++.+..++... ..+.+.++|+.|+||||+|+.+.+... ...+.. ..+......
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~~---------~~i~~~~~~ 78 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELY-GEDWRE---------NFLELNASD 78 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHc-CCcccc---------ceEEecccc
Confidence 3456899999999999988643 334579999999999999999987411 000100 000000000
Q ss_pred ccchHHHHHHHHHhc-----C-CCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCch-hH-HhhhcCcceEec
Q 035555 175 FVEFQSLMQHIQKHV-----A-GKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKE-TV-ARIMGSADIISV 246 (767)
Q Consensus 175 ~~~~~~~~~~l~~~l-----~-~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v-~~~~~~~~~~~l 246 (767)
..........+.+.. . ..+-++++|++..........+...+......+++|+++... .+ .........+++
T Consensus 79 ~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~ 158 (319)
T PRK00440 79 ERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRF 158 (319)
T ss_pred ccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeee
Confidence 011111112222111 1 345689999997655555666777776655567777776432 22 112223457899
Q ss_pred CCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchH
Q 035555 247 NVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVA 292 (767)
Q Consensus 247 ~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 292 (767)
.+++.++....+...+...+.... .+.+..+++.++|.+--+
T Consensus 159 ~~l~~~ei~~~l~~~~~~~~~~i~----~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 159 SPLKKEAVAERLRYIAENEGIEIT----DDALEAIYYVSEGDMRKA 200 (319)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 999999998888877643322112 334777888899887553
No 65
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=5.6e-06 Score=86.44 Aligned_cols=175 Identities=17% Similarity=0.163 Sum_probs=113.1
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHccc----chhhhhhhHHHHHHHHHHHhhCCC
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNND----DVKKILRKEYGIARAIIEALTYSS 172 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~~i~~~i~~~l~~~~ 172 (767)
.+++|.+..++.+.+.+.... -.+...++|+.|+||||+|+.++... ....|.|. ..+ ....
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~-~~~--------~~~~ 69 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDI-IEF--------KPIN 69 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCe-EEe--------cccc
Confidence 367899999999999986432 45677899999999999999887631 01112111 000 0000
Q ss_pred CCccchHHHHHHHH---H-hcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCchhHH--hhhcCcceEec
Q 035555 173 SNFVEFQSLMQHIQ---K-HVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKETVA--RIMGSADIISV 246 (767)
Q Consensus 173 ~~~~~~~~~~~~l~---~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~--~~~~~~~~~~l 246 (767)
......+++.+.+. . -..+++-++|+|++...+...+..+...+.....++.+|++|.+.+.. +....+..+.+
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~ 149 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKL 149 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeC
Confidence 11122233332222 1 123566688888887777788999999999888888888888654321 22344679999
Q ss_pred CCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHH
Q 035555 247 NVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAK 293 (767)
Q Consensus 247 ~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 293 (767)
.+++.++....+.+...+ .. .+.++.++..++|.|..+.
T Consensus 150 ~~~~~~~~~~~l~~~~~~----~~----~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 150 NRLSKEEIEKFISYKYND----IK----EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred CCcCHHHHHHHHHHHhcC----CC----HHHHHHHHHHcCCCHHHHH
Confidence 999999998888665311 11 1226678889999886543
No 66
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.38 E-value=2.8e-05 Score=75.44 Aligned_cols=269 Identities=17% Similarity=0.178 Sum_probs=144.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCCc
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSNF 175 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~~ 175 (767)
-.+|||.++.++++.-.+..... .++..-.|.++|++|.||||||.-+++. ....+.. .+.+..
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k~-------------tsGp~l 88 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLKI-------------TSGPAL 88 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeEe-------------cccccc
Confidence 45799999999998777765443 3456778999999999999999999994 3333322 112222
Q ss_pred cchHHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhhc--------CCCCcEEE-----------EEcCchhHHh
Q 035555 176 VEFQSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKT--------CLHGSKIL-----------ITTRKETVAR 236 (767)
Q Consensus 176 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~--------~~~gs~il-----------vTtR~~~v~~ 236 (767)
....++...|-. |+... .|++|.+..-....-+.+-....+ .++++|.+ -|||.-.+..
T Consensus 89 eK~gDlaaiLt~-Le~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~ 166 (332)
T COG2255 89 EKPGDLAAILTN-LEEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTN 166 (332)
T ss_pred cChhhHHHHHhc-CCcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccc
Confidence 333444443333 33333 456687765443322222222222 13445433 5888643332
Q ss_pred hhcC--cceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHHhHHhcCCCHHHHHHHHhh
Q 035555 237 IMGS--ADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIASLLRSKNTEKEWQNILES 314 (767)
Q Consensus 237 ~~~~--~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~~~ 314 (767)
.+.. .-...++.-+.+|-.++..+.+..-..... ++-+.+|++...|-|--..-+-+.++. +..+...
T Consensus 167 PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~----~~~a~eIA~rSRGTPRIAnRLLrRVRD------fa~V~~~ 236 (332)
T COG2255 167 PLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID----EEAALEIARRSRGTPRIANRLLRRVRD------FAQVKGD 236 (332)
T ss_pred hhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC----hHHHHHHHHhccCCcHHHHHHHHHHHH------HHHHhcC
Confidence 2211 335678888999999999887733222222 234888999999999655444433331 1111111
Q ss_pred hcccchhhhhhhhhhHHhhcccCCHHHHHHHHHhccCCCCcccChHHHHHHHHHcCCccCCCCCcHHHHHHHHHHHHHhc
Q 035555 315 EIWEIEEVEKNLLAPLLLSYNELPSKVKQCFTYCAIFPKNSKIWKDKLIELWMAQGFLNNKRSKEMEEIGEEYFNILASR 394 (767)
Q Consensus 315 ~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~l~~L~~~ 394 (767)
..-. ....+..+..|.+-=..|+.-.+..+..+.-...+-++.-+.+... . ..+..+.|++-|- .|++.
T Consensus 237 ~~I~-~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~---l----ge~~~TiEdv~EP---yLiq~ 305 (332)
T COG2255 237 GDID-RDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAA---L----GEDRDTIEDVIEP---YLIQQ 305 (332)
T ss_pred Cccc-HHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHH---h----cCchhHHHHHHhH---HHHHh
Confidence 0000 0111223333444444556555555544443333334444443321 1 1112334443333 47889
Q ss_pred CCCcccccC
Q 035555 395 SFFQDFERG 403 (767)
Q Consensus 395 sll~~~~~~ 403 (767)
+|+++...+
T Consensus 306 gfi~RTpRG 314 (332)
T COG2255 306 GFIQRTPRG 314 (332)
T ss_pred chhhhCCCc
Confidence 999876654
No 67
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=5.4e-06 Score=92.58 Aligned_cols=188 Identities=16% Similarity=0.172 Sum_probs=115.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhh---hh-HHHHHHHHHHH----
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKIL---RK-EYGIARAIIEA---- 167 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~-~~~i~~~i~~~---- 167 (767)
-.++||.+..++.|...+.... -...+.++|+.|+||||+|+.+.+...-...+ .+ .....+.|...
T Consensus 15 f~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D 89 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVD 89 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCC
Confidence 3579999999999998886532 34557899999999999999997631110000 11 11222222110
Q ss_pred ---hhCC-CCCccchHHHHHHHHHh-cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCc-hhHH-hhhcC
Q 035555 168 ---LTYS-SSNFVEFQSLMQHIQKH-VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRK-ETVA-RIMGS 240 (767)
Q Consensus 168 ---l~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~-~~~~~ 240 (767)
+... .....+..++.+.+... ..+++-++|+|++..........++..+..-....++|++|.+ ..+. .....
T Consensus 90 ~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SR 169 (647)
T PRK07994 90 LIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 (647)
T ss_pred ceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhh
Confidence 0000 01112222333222211 2466779999999888878888888888876556655555544 4443 33445
Q ss_pred cceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchH
Q 035555 241 ADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVA 292 (767)
Q Consensus 241 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 292 (767)
+..+.+.+++.++..+.+.+..-..+... .......|++.++|.+-.+
T Consensus 170 C~~~~f~~Ls~~ei~~~L~~il~~e~i~~----e~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 170 CLQFHLKALDVEQIRQQLEHILQAEQIPF----EPRALQLLARAADGSMRDA 217 (647)
T ss_pred heEeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 78999999999999998887642222111 1234677999999977543
No 68
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.38 E-value=2.5e-07 Score=100.56 Aligned_cols=178 Identities=25% Similarity=0.282 Sum_probs=103.8
Q ss_pred cccccCCcccEEeecCCccccccchhhcCCC-CCcEEEccCCccccccCcccccCcCCcEeeCCCCCCcccccccCcCCc
Q 035555 460 TNIEKLIHLKYLNLSSQKKIKRLPETLCELY-NLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPVGIRELI 538 (767)
Q Consensus 460 ~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~-~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~ 538 (767)
..+..+..++.|++.++. +..+|.....+. +|+.|++++|. +..+|..++.+++|+.|++++| .+..+|...+.++
T Consensus 110 ~~~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~ 186 (394)
T COG4886 110 SELLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLS 186 (394)
T ss_pred hhhhcccceeEEecCCcc-cccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc-hhhhhhhhhhhhh
Confidence 334445667777777777 777777666664 77777777776 6677666777777777777777 5666665544455
Q ss_pred CCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCCccccCCCCc
Q 035555 539 RLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPKNWIMSLTNL 618 (767)
Q Consensus 539 ~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L 618 (767)
+|+.|.+..+.... ++ ........|+.|.++.|.....+..+..+.++
T Consensus 187 ~L~~L~ls~N~i~~-------------------------l~-------~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l 234 (394)
T COG4886 187 NLNNLDLSGNKISD-------------------------LP-------PEIELLSALEELDLSNNSIIELLSSLSNLKNL 234 (394)
T ss_pred hhhheeccCCcccc-------------------------Cc-------hhhhhhhhhhhhhhcCCcceecchhhhhcccc
Confidence 55544332221111 00 00112234566666666555555556666667
Q ss_pred cEEEEeccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCcc
Q 035555 619 RYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYME 686 (767)
Q Consensus 619 ~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 686 (767)
..|.+.++........++.+++|++|++++|. ++.++. ++.+.+|+.|+++++.
T Consensus 235 ~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~-i~~i~~-------------~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 235 SGLELSNNKLEDLPESIGNLSNLETLDLSNNQ-ISSISS-------------LGSLTNLRELDLSGNS 288 (394)
T ss_pred cccccCCceeeeccchhccccccceecccccc-cccccc-------------ccccCccCEEeccCcc
Confidence 66665554322223345667777777777665 444433 1256667777777653
No 69
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.38 E-value=2.3e-06 Score=78.60 Aligned_cols=121 Identities=19% Similarity=0.142 Sum_probs=67.2
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccch-hhh---hhhHHHHHHHHHHHhhCCCCCc
Q 035555 100 FGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDV-KKI---LRKEYGIARAIIEALTYSSSNF 175 (767)
Q Consensus 100 vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~-~~~---F~~~~~i~~~i~~~l~~~~~~~ 175 (767)
+|+++.++.+...+... ..+.+.|+|++|+|||++|+++++.... ... ++. ................
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~-- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNA-SDLLEGLVVAELFGHF-- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEeh-hhhhhhhHHHHHhhhh--
Confidence 47889999999988653 3457899999999999999999885310 000 111 0000000000000000
Q ss_pred cchHHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhhcC------CCCcEEEEEcCchh
Q 035555 176 VEFQSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTC------LHGSKILITTRKET 233 (767)
Q Consensus 176 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~------~~gs~ilvTtR~~~ 233 (767)
............++.++|+||++.........+...+... ..+..||+||....
T Consensus 72 ----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112233456789999999754223333444444433 35778888888643
No 70
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=1e-05 Score=89.09 Aligned_cols=194 Identities=16% Similarity=0.156 Sum_probs=115.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccc----hhhhhhhHHHHHHHHHHH-----
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDD----VKKILRKEYGIARAIIEA----- 167 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~----~~~~F~~~~~i~~~i~~~----- 167 (767)
.+++|.+..++.|...+.... -...+.++|+.|+||||+|+.+++... ....-.........|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 468999999999998886432 345678999999999999999976211 000000000111111100
Q ss_pred --hhC-CCCCccchHHHHHHHHHh-cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEE-EcCchhHH-hhhcCc
Q 035555 168 --LTY-SSSNFVEFQSLMQHIQKH-VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILI-TTRKETVA-RIMGSA 241 (767)
Q Consensus 168 --l~~-~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~-~~~~~~ 241 (767)
+.. ......+..++.+.+... ..+++-++|+|++.......++.++..+......+.+|+ ||....+. ......
T Consensus 91 ieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc 170 (546)
T PRK14957 91 IEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRC 170 (546)
T ss_pred EEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHhe
Confidence 000 001112223333333321 235677999999987777788888888887655665554 54433333 334447
Q ss_pred ceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCc-chHHHHHhHH
Q 035555 242 DIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLP-LVAKTIASLL 299 (767)
Q Consensus 242 ~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~~l 299 (767)
..+++.+++.++....+.+.+-..+... ..+....|++.++|.+ .|+..+-.++
T Consensus 171 ~~~~f~~Ls~~eI~~~L~~il~~egi~~----e~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 171 IQLHLKHISQADIKDQLKIILAKENINS----DEQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred eeEEeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7999999999998888776542222111 2234677889999855 4555554443
No 71
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.37 E-value=2e-07 Score=86.56 Aligned_cols=100 Identities=24% Similarity=0.182 Sum_probs=31.7
Q ss_pred eeeeeccCC--Ccccccccc-cCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCccc-ccCcCCcEeeC
Q 035555 446 CRRWRCDNY--IKEIPTNIE-KLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGI-GKLRKLMYLDN 521 (767)
Q Consensus 446 ~L~~l~l~~--~~~lp~~~~-~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~-~~l~~L~~L~l 521 (767)
.++.|++.+ +..+ +.++ .+.+|+.|++++|. ++.++. +..+++|++|++++|. +..++..+ ..+++|++|++
T Consensus 20 ~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~-I~~l~~-l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQ-ITKLEG-LPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccc-cchhhhhcCCCEEECCCCC-CccccC-ccChhhhhhcccCCCC-CCccccchHHhCCcCCEEEC
Confidence 456666663 3333 2454 46778888888887 777653 6677888888888877 66665544 35778888888
Q ss_pred CCCCCccccc--ccCcCCcCCcccceeEecC
Q 035555 522 DYTNSLRYLP--VGIRELIRLRRVRKFVVGG 550 (767)
Q Consensus 522 ~~~~~l~~lp--~~~~~l~~L~~L~~~~~~~ 550 (767)
++| .+..+. ..+..+++|+.|++..+..
T Consensus 96 ~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 96 SNN-KISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp TTS----SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred cCC-cCCChHHhHHHHcCCCcceeeccCCcc
Confidence 777 444432 2234455555554444433
No 72
>PF13173 AAA_14: AAA domain
Probab=98.36 E-value=2.1e-06 Score=76.62 Aligned_cols=114 Identities=21% Similarity=0.206 Sum_probs=71.9
Q ss_pred EEEEEEccCCChHHHHHHHHHcccc-----hhhhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEe
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNNDD-----VKKILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLD 199 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~~~-----~~~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlD 199 (767)
+++.|.|+.|+||||++++++.+.. +--.|+.... ... .+.+ ..+.+.+....++.+++||
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~------~~~-------~~~~-~~~~~~~~~~~~~~~i~iD 68 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRD------RRL-------ADPD-LLEYFLELIKPGKKYIFID 68 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHH------HHH-------hhhh-hHHHHHHhhccCCcEEEEe
Confidence 5899999999999999999987422 0001222000 000 0000 2233333344478899999
Q ss_pred CCCCcChhhHHHHHHhhhcCCCCcEEEEEcCchhHHhh------hcCcceEecCCCChhHH
Q 035555 200 DVWNEDFYKWEQFYNCLKTCLHGSKILITTRKETVARI------MGSADIISVNVLSETEC 254 (767)
Q Consensus 200 dv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~------~~~~~~~~l~~L~~~~~ 254 (767)
++... .+|......+-+..+..+|++|+........ .+....+++.||+..|-
T Consensus 69 Eiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 69 EIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 99544 5788877777766667889999997554422 12345789999988763
No 73
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=8.1e-06 Score=89.84 Aligned_cols=194 Identities=17% Similarity=0.168 Sum_probs=113.9
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhh--h-hhh-HHHHHHHHHHHhh--
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKK--I-LRK-EYGIARAIIEALT-- 169 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~--~-F~~-~~~i~~~i~~~l~-- 169 (767)
-.+++|++..++.+...+.... ..+.+.++|+.|+||||+|+.+++...-.. . ..+ .....+.+.....
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~D 89 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVD 89 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCc
Confidence 4578999999999999886532 346788999999999999999876311000 0 001 1122222211110
Q ss_pred -----CCC-CCccchHHHHHHHHHh-cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEc-CchhHH-hhhcC
Q 035555 170 -----YSS-SNFVEFQSLMQHIQKH-VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITT-RKETVA-RIMGS 240 (767)
Q Consensus 170 -----~~~-~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~-~~~~~ 240 (767)
+.. ....+..++...+... ..+++-++|+|++.......+..+...+......+.+|++| ....+. .....
T Consensus 90 iieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SR 169 (605)
T PRK05896 90 IVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISR 169 (605)
T ss_pred eEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhh
Confidence 000 1111122222222211 12344579999998777677888888887655555555554 433443 23344
Q ss_pred cceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCc-chHHHHHhH
Q 035555 241 ADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLP-LVAKTIASL 298 (767)
Q Consensus 241 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~~ 298 (767)
+..+++.+++.++....+...+...+.... .+.+..+++.++|.+ .|+..+-.+
T Consensus 170 cq~ieF~~Ls~~eL~~~L~~il~kegi~Is----~eal~~La~lS~GdlR~AlnlLekL 224 (605)
T PRK05896 170 CQRYNFKKLNNSELQELLKSIAKKEKIKIE----DNAIDKIADLADGSLRDGLSILDQL 224 (605)
T ss_pred hhhcccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 678999999999999888876533221111 234677889999865 455555543
No 74
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=1.7e-05 Score=83.54 Aligned_cols=187 Identities=13% Similarity=0.104 Sum_probs=116.4
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHccc-----chhhhh---------hhHHHH
Q 035555 95 DESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNND-----DVKKIL---------RKEYGI 160 (767)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~-----~~~~~F---------~~~~~i 160 (767)
.-.+++|.++.++.|.+.+.... -..-+.++|+.|+||+|+|..+.+.. .-..-+ ......
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~ 91 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPV 91 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChH
Confidence 34579999999999999987542 34568899999999999997775521 000000 000111
Q ss_pred HHHHHHHhhC------CC--C------CccchHHHHHHHHHhcC-----CCeEEEEEeCCCCcChhhHHHHHHhhhcCCC
Q 035555 161 ARAIIEALTY------SS--S------NFVEFQSLMQHIQKHVA-----GKKLLLVLDDVWNEDFYKWEQFYNCLKTCLH 221 (767)
Q Consensus 161 ~~~i~~~l~~------~~--~------~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 221 (767)
.+.+...-.. .. . .....++ ++.+.+.+. +++.++|+|++...+......+...+..-..
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 1222110000 00 0 0112233 333334332 5667999999988888888888888887666
Q ss_pred CcEEEEEcCch-hHH-hhhcCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHH
Q 035555 222 GSKILITTRKE-TVA-RIMGSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTI 295 (767)
Q Consensus 222 gs~ilvTtR~~-~v~-~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 295 (767)
++.+|++|.+. .+. ........+.+.+++.++..+++...... ... .....+++.++|.|+....+
T Consensus 171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~----~~~----~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD----LPD----DPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc----CCH----HHHHHHHHHcCCCHHHHHHH
Confidence 67677766654 332 23344779999999999999999876411 111 11267899999999866544
No 75
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=1.8e-05 Score=82.99 Aligned_cols=189 Identities=17% Similarity=0.207 Sum_probs=116.9
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccch-------hhhhh--h-HHHHHHHH
Q 035555 95 DESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDV-------KKILR--K-EYGIARAI 164 (767)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~-------~~~F~--~-~~~i~~~i 164 (767)
.-..++|.++..+.+...+.... ....+.|+|+.|+||||+|..+.+..-- ...+. + .....+.+
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i 95 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQI 95 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHH
Confidence 44579999999999999987542 4457889999999999999887663110 00000 0 11122222
Q ss_pred HHH-------hhCC--C-----CCccchHHHHHHHHHhc-----CCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEE
Q 035555 165 IEA-------LTYS--S-----SNFVEFQSLMQHIQKHV-----AGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKI 225 (767)
Q Consensus 165 ~~~-------l~~~--~-----~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 225 (767)
... +..+ . ......++ ++.+.+++ .+++-++|+|++...+......+...+.....+..+
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 211 0000 0 01111233 23344443 356779999999888888888888888765455554
Q ss_pred E-EEcCchhH-HhhhcCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHH
Q 035555 226 L-ITTRKETV-ARIMGSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTI 295 (767)
Q Consensus 226 l-vTtR~~~v-~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 295 (767)
| +|++...+ ....+....+.+.+++.++..+++.+.+.... -..+.+..|++.++|.|.....+
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~------~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG------SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 4 44444333 22334467999999999999999987432111 11233678999999999865543
No 76
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.34 E-value=3.3e-08 Score=99.99 Aligned_cols=141 Identities=15% Similarity=0.091 Sum_probs=62.7
Q ss_pred CCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCC--ccc-cCCCCccEEEEeccCCCCCC--CC-CCCC
Q 035555 565 ILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPK--NWI-MSLTNLRYLSLSLFKNCEQL--LP-LGKL 638 (767)
Q Consensus 565 ~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p--~~~-~~l~~L~~L~L~~~~~~~~l--~~-l~~l 638 (767)
..|+.+...++.++++. ...+--.++.+|+.|.++.+....-- ..+ .+++.|+.|++..|....+. .. -.++
T Consensus 294 ~~lq~l~~s~~t~~~d~--~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDE--VLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hHhhhhcccCCCCCchH--HHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 34445555544443321 11222234556666666555421100 001 14556666666655433221 11 2345
Q ss_pred CCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCccc
Q 035555 639 QSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKL 718 (767)
Q Consensus 639 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 718 (767)
|.|+.|.++.|..+++.+..-.... ..+...|+.|.|++++.+++-... .+...++|+.+++.+|..+
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~-------~c~~~~l~~lEL~n~p~i~d~~Le-----~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSS-------SCSLEGLEVLELDNCPLITDATLE-----HLSICRNLERIELIDCQDV 439 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhc-------cccccccceeeecCCCCchHHHHH-----HHhhCcccceeeeechhhh
Confidence 6666666666654444321111110 114455666666666544332221 2334556666666666554
Q ss_pred c
Q 035555 719 K 719 (767)
Q Consensus 719 ~ 719 (767)
.
T Consensus 440 t 440 (483)
T KOG4341|consen 440 T 440 (483)
T ss_pred h
Confidence 4
No 77
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.34 E-value=1.8e-08 Score=99.71 Aligned_cols=65 Identities=14% Similarity=0.052 Sum_probs=30.1
Q ss_pred HhhccCCCCcCceEEEecCCc-----cCCccccCCCCccEEEEeccCCCCCCC-----CCCCCCCCCeeeecCCC
Q 035555 586 RAELEKKKNLFDLELRFDCNV-----IPKNWIMSLTNLRYLSLSLFKNCEQLL-----PLGKLQSLEYLQIGGMH 650 (767)
Q Consensus 586 ~~~l~~~~~L~~L~l~~~~~~-----~~p~~~~~l~~L~~L~L~~~~~~~~l~-----~l~~l~~L~~L~L~~~~ 650 (767)
...+...+.|+.+.+..|.+. .+-..+..+++|+.|+|.+|.....-. .+..+|+|+.|++++|-
T Consensus 178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 334445555666665555431 111122345666666666553222110 13345556666666554
No 78
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.34 E-value=1e-07 Score=92.06 Aligned_cols=60 Identities=20% Similarity=0.084 Sum_probs=30.4
Q ss_pred ccCCcccEEeecCCcc------c--cccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCC
Q 035555 463 EKLIHLKYLNLSSQKK------I--KRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDY 523 (767)
Q Consensus 463 ~~l~~L~~L~L~~~~~------~--~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~ 523 (767)
..+..|.+|-.++... + ..+|-.+.-+.+|.++.++.|. .+.+-...-.-+.|+++.+.+
T Consensus 179 df~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~ 246 (490)
T KOG1259|consen 179 DFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHN 246 (490)
T ss_pred HhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc-hhheeceeecCchhheeeeec
Confidence 3456677776665431 1 1234445556677777777765 333322112224566665543
No 79
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=9.6e-05 Score=77.79 Aligned_cols=195 Identities=17% Similarity=0.213 Sum_probs=117.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhh-------------hhhHHHHHH
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKI-------------LRKEYGIAR 162 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~-------------F~~~~~i~~ 162 (767)
+..+.+||++++++...|...-. +....-+.|+|..|+|||+.++.+.+. +... +....++..
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~ 91 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLS 91 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHH
Confidence 33499999999999988865433 223334999999999999999999884 2222 112888999
Q ss_pred HHHHHhhCCCCCccchHHHHHHHHHhcC--CCeEEEEEeCCCCcChhhHHHHHHhhhcCCC-CcE--EEEEcCchhHHhh
Q 035555 163 AIIEALTYSSSNFVEFQSLMQHIQKHVA--GKKLLLVLDDVWNEDFYKWEQFYNCLKTCLH-GSK--ILITTRKETVARI 237 (767)
Q Consensus 163 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~-gs~--ilvTtR~~~v~~~ 237 (767)
.|++.++..........+....+.+.+. ++.+++|||++..-....-+.+-..+..... .++ ||..+-+..+...
T Consensus 92 ~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 92 KILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred HHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHH
Confidence 9999887554444555666666776664 5889999999954221111334444443322 343 3334444333332
Q ss_pred hcC-------cceEecCCCChhHHHHHHHHhcCCC-CCCcchhhHHHHHHHHHhhcCC-CcchHHH
Q 035555 238 MGS-------ADIISVNVLSETECWLVFESLGFSG-KSMEERENLEKIGREIIRKCKG-LPLVAKT 294 (767)
Q Consensus 238 ~~~-------~~~~~l~~L~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g-~PLai~~ 294 (767)
+.. ...+..+|-+.+|-.+++..++-.. ..........+....++..-+| .-.|+..
T Consensus 172 ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidi 237 (366)
T COG1474 172 LDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDI 237 (366)
T ss_pred hhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHH
Confidence 211 2347788889999999988776321 1112223333444444444443 3344443
No 80
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.33 E-value=5.8e-08 Score=93.69 Aligned_cols=61 Identities=28% Similarity=0.268 Sum_probs=39.0
Q ss_pred ccCCCCcCceEEEecCCccCCccccCCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCC
Q 035555 589 LEKKKNLFDLELRFDCNVIPKNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMH 650 (767)
Q Consensus 589 l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 650 (767)
+..+.+|+.|+|++|....+-.|-..+-|++.|.|+.| .++++..++.+=+|.+|++.+|.
T Consensus 325 La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N-~iE~LSGL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 325 LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN-KIETLSGLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-hHhhhhhhHhhhhheeccccccc
Confidence 34445666666666666666666566667777777765 55666666666677777776665
No 81
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=8.7e-06 Score=88.69 Aligned_cols=194 Identities=17% Similarity=0.200 Sum_probs=109.9
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhh--hhh-h-HHHHHHHHHHHh---
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKK--ILR-K-EYGIARAIIEAL--- 168 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~--~F~-~-~~~i~~~i~~~l--- 168 (767)
-.+++|.+...+.|...+.... -...+.++|++|+||||+|+.+++...-.. .+. + .......+...-
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~d 87 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMD 87 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCc
Confidence 4579999998888888776432 335688999999999999999976411100 000 0 001111111000
Q ss_pred --hCCCCCccchHHHHHHHHHh-----cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCc-hhHHh-hhc
Q 035555 169 --TYSSSNFVEFQSLMQHIQKH-----VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRK-ETVAR-IMG 239 (767)
Q Consensus 169 --~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~-~~~ 239 (767)
..........+++ +.+.+. ..+++-++|+|+++.......+.+...+........+|++|.+ ..+.. ...
T Consensus 88 v~el~aa~~~gid~i-R~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~S 166 (472)
T PRK14962 88 VIELDAASNRGIDEI-RKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIIS 166 (472)
T ss_pred cEEEeCcccCCHHHH-HHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhc
Confidence 0000001112222 222222 2346679999999765555566677777654444444444433 33432 233
Q ss_pred CcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcC-CCcchHHHHHhHH
Q 035555 240 SADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCK-GLPLVAKTIASLL 299 (767)
Q Consensus 240 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~PLai~~~~~~l 299 (767)
....+.+.+++.++....+.+.+...+.... .+....|++.++ +++.|+..+-.+.
T Consensus 167 R~~vv~f~~l~~~el~~~L~~i~~~egi~i~----~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 167 RCQVIEFRNISDELIIKRLQEVAEAEGIEID----REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred CcEEEEECCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4678999999999998888877633222111 234667887765 5567777766544
No 82
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.32 E-value=6.9e-06 Score=87.73 Aligned_cols=180 Identities=14% Similarity=0.090 Sum_probs=98.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCC-------CCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHh
Q 035555 96 ESEIFGREKEKSELVNRLLCESSK-------EQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEAL 168 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l 168 (767)
..++.|+++.+++|.+.+...-.. +-...+-|.++|++|+|||++|+++++. ....|-... ...+....
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~~~v~--~~~l~~~~ 196 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATFIRVV--GSELVRKY 196 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCEEecc--hHHHHHHh
Confidence 346899999999999877432110 1123456999999999999999999984 333332210 00111110
Q ss_pred hCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCc-----------ChhhHHHHHHhh---hcC--CCCcEEEEEcCch
Q 035555 169 TYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE-----------DFYKWEQFYNCL---KTC--LHGSKILITTRKE 232 (767)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l---~~~--~~gs~ilvTtR~~ 232 (767)
.+ .....+...+...-...+.+|++|+++.- +......+...+ ... ..+.+||.||...
T Consensus 197 ~g-----~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~ 271 (364)
T TIGR01242 197 IG-----EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRP 271 (364)
T ss_pred hh-----HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCCh
Confidence 00 00111111222222346789999998532 111122233332 211 2456788888753
Q ss_pred hHH-hhh----cCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCc
Q 035555 233 TVA-RIM----GSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLP 289 (767)
Q Consensus 233 ~v~-~~~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 289 (767)
... ..+ .....+.++..+.++..++|..++...... .... ...+++.+.|..
T Consensus 272 ~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 272 DILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVD----LEAIAKMTEGAS 328 (364)
T ss_pred hhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCC----HHHHHHHcCCCC
Confidence 221 111 124578899999999999998876433221 1112 455677776654
No 83
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.32 E-value=3.1e-06 Score=76.07 Aligned_cols=107 Identities=19% Similarity=0.191 Sum_probs=68.5
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcccchh------h---hhh-----hHHHHHHHHHHHhhCCCCCccchHHHHHHHHHh
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNNDDVK------K---ILR-----KEYGIARAIIEALTYSSSNFVEFQSLMQHIQKH 188 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~~~~~------~---~F~-----~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 188 (767)
+.+.+.|+|.+|+|||++++.+.++..-. . .+. ....+...++..++.......+..++.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 44689999999999999999998742110 0 011 167888899999887666555666677777777
Q ss_pred cCCCe-EEEEEeCCCCc-ChhhHHHHHHhhhcCCCCcEEEEEcCc
Q 035555 189 VAGKK-LLLVLDDVWNE-DFYKWEQFYNCLKTCLHGSKILITTRK 231 (767)
Q Consensus 189 l~~k~-~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~ 231 (767)
+...+ .+||+|++..- +...++.+..... ..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 76544 59999999654 4444444544433 566677777665
No 84
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=9.7e-08 Score=97.17 Aligned_cols=206 Identities=16% Similarity=0.080 Sum_probs=124.9
Q ss_pred hcCCCCCcEEEccCCccccccCc--ccccCcCCcEeeCCCCCCccc---ccccCcCCcCCcccceeEecCccCCCCChhh
Q 035555 486 LCELYNLECLAISFCTNLRQLPQ--GIGKLRKLMYLDNDYTNSLRY---LPVGIRELIRLRRVRKFVVGGGYDRACSLES 560 (767)
Q Consensus 486 ~~~l~~L~~L~L~~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~---lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~ 560 (767)
=.++.+|+...|++|. +...+. ....|++++.||++.| -+.. +-.-...|++|+.|++..+....
T Consensus 117 Qsn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~-------- 186 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSN-------- 186 (505)
T ss_pred hhhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccC--------
Confidence 4468889999999887 666663 5678999999999987 2221 11122344555555432221110
Q ss_pred hhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCc-cCCccc-cCCCCccEEEEeccCCC-CCCCCCCC
Q 035555 561 LKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNV-IPKNWI-MSLTNLRYLSLSLFKNC-EQLLPLGK 637 (767)
Q Consensus 561 l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~-~~l~~L~~L~L~~~~~~-~~l~~l~~ 637 (767)
..+.. .-..+.+|+.|.|+.|++. .--.|+ ..+|+|..|.|..|... ....+..-
T Consensus 187 -------------------~~~s~---~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i 244 (505)
T KOG3207|consen 187 -------------------FISSN---TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKI 244 (505)
T ss_pred -------------------Ccccc---chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhh
Confidence 00000 0014568888999888764 111122 26899999999988522 22223455
Q ss_pred CCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCccCCcccc-ccccCcccceEeeccCc
Q 035555 638 LQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKG-EIIIMPRLSCLIIFGCF 716 (767)
Q Consensus 638 l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~c~ 716 (767)
+..|+.|+|++|+.+.. +. +. ..+.||.|+.|.++.+ .+.++...+.+.+ ....||+|++|++..|
T Consensus 245 ~~~L~~LdLs~N~li~~-~~-~~---------~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N- 311 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDF-DQ-GY---------KVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISEN- 311 (505)
T ss_pred hhHHhhccccCCccccc-cc-cc---------ccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccC-
Confidence 78899999999884432 21 11 1358999999999887 5665543221111 1347999999999998
Q ss_pred cccCCC--cCCCCCCCCcEEEe
Q 035555 717 KLKALP--DLLLQKTTLQKLHI 736 (767)
Q Consensus 717 ~l~~lp--~~~~~l~sL~~L~l 736 (767)
++..++ ..+..+++|..|.+
T Consensus 312 ~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 312 NIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred ccccccccchhhccchhhhhhc
Confidence 454444 23445667777776
No 85
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.31 E-value=7.7e-06 Score=80.10 Aligned_cols=191 Identities=12% Similarity=0.075 Sum_probs=113.6
Q ss_pred CCcCCCCCCCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHH
Q 035555 87 RVPSISSIDESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIE 166 (767)
Q Consensus 87 ~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~ 166 (767)
+.+...|..-.+++|.+..+..+...+... .......+|++|.|||+.|.++++.-.-...|.+ .++..=+.
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~--rvl~lnaS 97 (346)
T KOG0989|consen 26 WTEKYRPKTFDELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPC--RVLELNAS 97 (346)
T ss_pred hHHHhCCCcHHhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHHHHHhcCcccccc--chhhhccc
Confidence 333344445567999999999999988762 5678999999999999999888774211223333 00000000
Q ss_pred HhhCCC---CCccchHHHHHHHHHhc--CCCe-EEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCc-hhHHh-hh
Q 035555 167 ALTYSS---SNFVEFQSLMQHIQKHV--AGKK-LLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRK-ETVAR-IM 238 (767)
Q Consensus 167 ~l~~~~---~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~-~~ 238 (767)
.-.+.. ....+...+........ .-++ -.+|||+++......|..++..+......++.++.+.. ..+-. ..
T Consensus 98 derGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 98 DERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred ccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 000000 00011111111110000 0123 47899999999999999999999887777775554443 22222 22
Q ss_pred cCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCc
Q 035555 239 GSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLP 289 (767)
Q Consensus 239 ~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 289 (767)
....-+.-++|..++...-+...+..++...+ .+..+.|++.++|--
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d----~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEGVDID----DDALKLIAKISDGDL 224 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCcH
Confidence 33557788899999988888877754443332 234677888887754
No 86
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.30 E-value=2.4e-05 Score=83.78 Aligned_cols=191 Identities=13% Similarity=0.120 Sum_probs=111.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccc--hhhhhhh--HHHHHHHHHHHhhC-
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDD--VKKILRK--EYGIARAIIEALTY- 170 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~--~~~~F~~--~~~i~~~i~~~l~~- 170 (767)
-.+++|.++.++.+.+.+.... -...+.++|++|+||||+|+.+..... ....+.. ...-...+......
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~ 87 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD 87 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 3468999999999999886432 345788999999999999988875311 0000100 00000111110000
Q ss_pred ----CCCCcc---chHHHHHHHHHh-cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCchh-HH-hhhcC
Q 035555 171 ----SSSNFV---EFQSLMQHIQKH-VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKET-VA-RIMGS 240 (767)
Q Consensus 171 ----~~~~~~---~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~-~~~~~ 240 (767)
...... +..++.+.+... ..+++-++|+|++..........+...+......+.+|++|.+.. +. .....
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr 167 (355)
T TIGR02397 88 VIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSR 167 (355)
T ss_pred EEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhh
Confidence 000011 122233322221 234556899999976655667778777765555666666665433 22 22334
Q ss_pred cceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHH
Q 035555 241 ADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTI 295 (767)
Q Consensus 241 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 295 (767)
...++..+++.++..+++...+-..+.... .+.+..+++.++|.|..+...
T Consensus 168 ~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~----~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 168 CQRFDFKRIPLEDIVERLKKILDKEGIKIE----DEALELIARAADGSLRDALSL 218 (355)
T ss_pred eeEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCChHHHHHH
Confidence 568889999999998888876532221111 245777899999988655443
No 87
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.4e-05 Score=89.29 Aligned_cols=188 Identities=15% Similarity=0.147 Sum_probs=112.6
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccch------hh-hh-hh-HHHHHHHHHH
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDV------KK-IL-RK-EYGIARAIIE 166 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~------~~-~F-~~-~~~i~~~i~~ 166 (767)
-.++||-+..++.|..++.... -...+.++|+.|+||||+|+.+.+...- .. .+ .+ .....+.|..
T Consensus 15 f~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~ 89 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDS 89 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHc
Confidence 3568999999999999887542 3467789999999999999988542110 00 00 00 1112222211
Q ss_pred Hh-----hCCCCCccchHHHHHHHHHh----cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCc-hhHH-
Q 035555 167 AL-----TYSSSNFVEFQSLMQHIQKH----VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRK-ETVA- 235 (767)
Q Consensus 167 ~l-----~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~- 235 (767)
.- ..........+++.+.+... ..++.-++|+|+|+......+..++..+..-...+++|++|.+ ..+.
T Consensus 90 g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 90 GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhH
Confidence 00 00000112223333222221 1245568999999888878888888888765555566555543 3332
Q ss_pred hhhcCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchH
Q 035555 236 RIMGSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVA 292 (767)
Q Consensus 236 ~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 292 (767)
........+++.+++.++..+.+.+.+...+.... .+....|++.++|.+--+
T Consensus 170 TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie----~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 170 TVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE----PQALRLLARAARGSMRDA 222 (618)
T ss_pred HHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 33455789999999999999888876533322111 234677888998877444
No 88
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.30 E-value=1e-05 Score=91.52 Aligned_cols=194 Identities=16% Similarity=0.098 Sum_probs=113.2
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchh--------hhh---hh------H
Q 035555 95 DESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVK--------KIL---RK------E 157 (767)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~--------~~F---~~------~ 157 (767)
.-++++|++..+..+.+.+... ....+.|+|++|+||||+|+.+++..... ..| ++ .
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~ 225 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDP 225 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCH
Confidence 3457899999999988877432 34579999999999999999987642111 011 10 0
Q ss_pred HHHHH---------------HHHHHhhCCCC----------------Cc-cchHHHHHHHHHhcCCCeEEEEEeCCCCcC
Q 035555 158 YGIAR---------------AIIEALTYSSS----------------NF-VEFQSLMQHIQKHVAGKKLLLVLDDVWNED 205 (767)
Q Consensus 158 ~~i~~---------------~i~~~l~~~~~----------------~~-~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~ 205 (767)
..+.. ..+...+.... +. .-....+..+...++++++.++-|+.|..+
T Consensus 226 ~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~ 305 (615)
T TIGR02903 226 REVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDD 305 (615)
T ss_pred HHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCC
Confidence 01100 00111110000 00 011235677888888888888888887776
Q ss_pred hhhHHHHHHhhhcCCCCcEEEE--EcCchh-HH-hhhcCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHH
Q 035555 206 FYKWEQFYNCLKTCLHGSKILI--TTRKET-VA-RIMGSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREI 281 (767)
Q Consensus 206 ~~~~~~l~~~l~~~~~gs~ilv--TtR~~~-v~-~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i 281 (767)
...|+.+...+....+...|++ ||++.. +. ........+.+.+++.+|.++++.+.+-..... . ..++.+.|
T Consensus 306 ~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~-l---s~eal~~L 381 (615)
T TIGR02903 306 PNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH-L---AAGVEELI 381 (615)
T ss_pred cccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC-C---CHHHHHHH
Confidence 6778887777766666555665 566432 11 112234577889999999999999875322111 1 12334445
Q ss_pred HhhcCCCcchHHHHHhH
Q 035555 282 IRKCKGLPLVAKTIASL 298 (767)
Q Consensus 282 ~~~~~g~PLai~~~~~~ 298 (767)
.+.+..-+-|+..++..
T Consensus 382 ~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 382 ARYTIEGRKAVNILADV 398 (615)
T ss_pred HHCCCcHHHHHHHHHHH
Confidence 55554445555544443
No 89
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.28 E-value=2.5e-05 Score=77.65 Aligned_cols=153 Identities=14% Similarity=0.136 Sum_probs=84.2
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCC
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVW 202 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 202 (767)
..+.+.|+|..|+|||+||+++++...- ..... ...+..+....+ ... ...-++|+||+.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~-~~~~~-----------------~~i~~~~~~~~~-~~~-~~~~~liiDdi~ 100 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASY-GGRNA-----------------RYLDAASPLLAF-DFD-PEAELYAVDDVE 100 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh-CCCcE-----------------EEEehHHhHHHH-hhc-ccCCEEEEeChh
Confidence 3457899999999999999999884210 00000 000000000000 111 223478999996
Q ss_pred CcChhhHHHHHHhhhcC-CCCc-EEEEEcCchhHH--------hhhcCcceEecCCCChhHHHHHHHHhcCCCCCCcchh
Q 035555 203 NEDFYKWEQFYNCLKTC-LHGS-KILITTRKETVA--------RIMGSADIISVNVLSETECWLVFESLGFSGKSMEERE 272 (767)
Q Consensus 203 ~~~~~~~~~l~~~l~~~-~~gs-~ilvTtR~~~v~--------~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~ 272 (767)
..+...-..+...+... ..+. .+|+|++..... ..+.....+.+++++.++-..++.+.+-......
T Consensus 101 ~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l--- 177 (227)
T PRK08903 101 RLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQL--- 177 (227)
T ss_pred hcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCC---
Confidence 54333333344444321 2333 366666643211 1223346889999999887777665432211111
Q ss_pred hHHHHHHHHHhhcCCCcchHHHHHhHH
Q 035555 273 NLEKIGREIIRKCKGLPLVAKTIASLL 299 (767)
Q Consensus 273 ~~~~~~~~i~~~~~g~PLai~~~~~~l 299 (767)
-++....+++...|.+..+..+...+
T Consensus 178 -~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 178 -ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred -CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 23456778888889988877666555
No 90
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.4e-05 Score=86.01 Aligned_cols=191 Identities=14% Similarity=0.140 Sum_probs=112.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhh-----------hh-HHHHHHH
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKIL-----------RK-EYGIARA 163 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F-----------~~-~~~i~~~ 163 (767)
-.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-...+ .+ .....+.
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~ 89 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRD 89 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHH
Confidence 3578999999999988886432 23458899999999999999887631110000 00 0111111
Q ss_pred HHHHhhCC-----CCCccchHHHHHHHHHhc-----CCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEc-Cch
Q 035555 164 IIEALTYS-----SSNFVEFQSLMQHIQKHV-----AGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITT-RKE 232 (767)
Q Consensus 164 i~~~l~~~-----~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~ 232 (767)
+....... .......+++.+ +.+.+ .+++-++|+|++.......++.+...+....+.+.+|++| +..
T Consensus 90 ~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 90 FDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred HhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 11100000 001111233332 22333 2456689999998777678888888888766667666555 434
Q ss_pred hHHh-hhcCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcc-hHHHHH
Q 035555 233 TVAR-IMGSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPL-VAKTIA 296 (767)
Q Consensus 233 ~v~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~ 296 (767)
.+.. .......+++.+++.++..+.+...+-..+... ..+.+..|++.++|.+- |+..+-
T Consensus 169 kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i----~~~al~~l~~~s~g~lr~a~~~L~ 230 (397)
T PRK14955 169 KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISV----DADALQLIGRKAQGSMRDAQSILD 230 (397)
T ss_pred HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4332 223356789999999999888877652222111 23447889999999774 444443
No 91
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.27 E-value=2.5e-06 Score=87.43 Aligned_cols=258 Identities=21% Similarity=0.155 Sum_probs=156.2
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcccchhhhhhh------------HHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcC
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK------------EYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVA 190 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~------------~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 190 (767)
..+.|.++|.|||||||++-++.. +..-|.. ...+..-....++... .+.+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~---~~g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHV---QPGDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccc---ccchHHHHHHHHHHh
Confidence 567999999999999999988876 2222322 1111222222233222 222334455666777
Q ss_pred CCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCchhHHhhhcCcceEecCCCChh-HHHHHHHHhcCCCCCC-
Q 035555 191 GKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKETVARIMGSADIISVNVLSET-ECWLVFESLGFSGKSM- 268 (767)
Q Consensus 191 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~l~~~~~~~~~~~- 268 (767)
++|.++|+||...-- ..-..+...+-.+.+.-.|+.|+|.... ........+++|+.. ++.++|...+......
T Consensus 87 ~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 889999999983211 1112233333344455568888886432 233556777888765 6888877665322211
Q ss_pred cchhhHHHHHHHHHhhcCCCcchHHHHHhHHhcCCCHHHHHHHHhhhcccch-------hhhhhhhhhHHhhcccCCHHH
Q 035555 269 EERENLEKIGREIIRKCKGLPLVAKTIASLLRSKNTEKEWQNILESEIWEIE-------EVEKNLLAPLLLSYNELPSKV 341 (767)
Q Consensus 269 ~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~-------~~~~~i~~~l~~sy~~L~~~~ 341 (767)
.....-......|.+..+|.|++|..+++..+.-. ..+-...++.....+. ..+......+.+||.-|....
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~-~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS-PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 12233445688899999999999999999887652 3333333332222221 223568889999999999999
Q ss_pred HHHHHHhccCCCCcccChHHHHHHHHHcCCccCCCCCcHHHHHHHHHHHHHhcCCCcc
Q 035555 342 KQCFTYCAIFPKNSKIWKDKLIELWMAQGFLNNKRSKEMEEIGEEYFNILASRSFFQD 399 (767)
Q Consensus 342 k~~f~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~ 399 (767)
+-.|.-++.|...+..+. ..|.+.|-.. ..........+..+++.|+...
T Consensus 242 ~~~~~rLa~~~g~f~~~l----~~~~a~g~~~----~~~~y~~~~a~~ll~~kslv~a 291 (414)
T COG3903 242 RALFGRLAVFVGGFDLGL----ALAVAAGADV----DVPRYLVLLALTLLVDKSLVVA 291 (414)
T ss_pred HHHhcchhhhhhhhcccH----HHHHhcCCcc----ccchHHHHHHHHHHhhccchhh
Confidence 999999999988776542 2333332211 1122344455677788887754
No 92
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=2.3e-05 Score=84.93 Aligned_cols=187 Identities=13% Similarity=0.117 Sum_probs=113.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHccc--chhhh--hhhHHHHHHHHHHHhhC-
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNND--DVKKI--LRKEYGIARAIIEALTY- 170 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~--~~~~~--F~~~~~i~~~i~~~l~~- 170 (767)
-.++||.+..++.|...+.... -.+.+.++|+.|+||||+|+.+++.- ..... ..........|......
T Consensus 12 f~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D 86 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD 86 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC
Confidence 3578999999999888886432 34578899999999999998887520 00000 00011122222221110
Q ss_pred ----CCCCccchHHHHHHHHHh----cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCc-hhHH-hhhcC
Q 035555 171 ----SSSNFVEFQSLMQHIQKH----VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRK-ETVA-RIMGS 240 (767)
Q Consensus 171 ----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~-~~~~~ 240 (767)
........+++...+... ..++.-++|+|++........+.+...+..-.+.+.+|++|.+ +.+. .....
T Consensus 87 v~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SR 166 (491)
T PRK14964 87 VIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISR 166 (491)
T ss_pred EEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHh
Confidence 001111223332222211 1245668999999777767788888888876666666665543 4443 23344
Q ss_pred cceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcch
Q 035555 241 ADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLV 291 (767)
Q Consensus 241 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 291 (767)
...+++.+++.++..+.+.+.+...+.... .+.+..|++.++|.+-.
T Consensus 167 c~~~~f~~l~~~el~~~L~~ia~~Egi~i~----~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 167 CQRFDLQKIPTDKLVEHLVDIAKKENIEHD----EESLKLIAENSSGSMRN 213 (491)
T ss_pred heeeecccccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 678999999999999988887643332222 23467789999887753
No 93
>PRK08727 hypothetical protein; Validated
Probab=98.27 E-value=2.5e-05 Score=77.57 Aligned_cols=145 Identities=16% Similarity=0.070 Sum_probs=81.5
Q ss_pred EEEEEEccCCChHHHHHHHHHcccchhh---hhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCC
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNNDDVKK---ILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDV 201 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv 201 (767)
..+.|+|..|+|||.|++++++...-.. .|-...+.... ..+.+.. + .+.-+||+||+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~-----------------~~~~~~~-l-~~~dlLiIDDi 102 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGR-----------------LRDALEA-L-EGRSLVALDGL 102 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhh-----------------HHHHHHH-H-hcCCEEEEeCc
Confidence 4699999999999999999977421111 11111111110 0111111 1 23358999999
Q ss_pred CCcC-hhhHHH-HHHhhhcC-CCCcEEEEEcCch---------hHHhhhcCcceEecCCCChhHHHHHHHHhcCCCCCCc
Q 035555 202 WNED-FYKWEQ-FYNCLKTC-LHGSKILITTRKE---------TVARIMGSADIISVNVLSETECWLVFESLGFSGKSME 269 (767)
Q Consensus 202 ~~~~-~~~~~~-l~~~l~~~-~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~ 269 (767)
.... ...|.. +...+... ..|..||+|++.. ++...+.....+++++++.++-.+++.+++....-..
T Consensus 103 ~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l 182 (233)
T PRK08727 103 ESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLAL 182 (233)
T ss_pred ccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 5321 122332 33333221 3456699999852 2223334456899999999999999998764322111
Q ss_pred chhhHHHHHHHHHhhcCCCcchH
Q 035555 270 ERENLEKIGREIIRKCKGLPLVA 292 (767)
Q Consensus 270 ~~~~~~~~~~~i~~~~~g~PLai 292 (767)
.++....|++.+.|-.-.+
T Consensus 183 ----~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 183 ----DEAAIDWLLTHGERELAGL 201 (233)
T ss_pred ----CHHHHHHHHHhCCCCHHHH
Confidence 2334666777777655444
No 94
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=2e-05 Score=83.80 Aligned_cols=190 Identities=12% Similarity=0.080 Sum_probs=112.1
Q ss_pred CccccchhHHHHHHHHHhcCCCC----CCCCCEEEEEEccCCChHHHHHHHHHcccchhh--hhhh-HHHHHHHHHHHhh
Q 035555 97 SEIFGREKEKSELVNRLLCESSK----EQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKK--ILRK-EYGIARAIIEALT 169 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~-~~~i~~~i~~~l~ 169 (767)
.+++|.+..++.|...+...... ...-.+-+.++|+.|+|||++|+.+.+...-.. .-.+ .....+.+...-.
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 36899999999999999764310 011345688999999999999998865210000 0000 1111111111000
Q ss_pred ------CCCCCccchHHH---HHHHHH-hcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCc-hhHH-hh
Q 035555 170 ------YSSSNFVEFQSL---MQHIQK-HVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRK-ETVA-RI 237 (767)
Q Consensus 170 ------~~~~~~~~~~~~---~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~-~~ 237 (767)
.+.......+++ .+.+.. -..+++-++|+|++...+......+...+....++..+|++|.+ ..+. ..
T Consensus 85 pD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTI 164 (394)
T PRK07940 85 PDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTI 164 (394)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHH
Confidence 000011122232 222221 11245568889999887777777788888776667766666665 3333 33
Q ss_pred hcCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHH
Q 035555 238 MGSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTI 295 (767)
Q Consensus 238 ~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 295 (767)
......+.+.+++.++..+.+.+... .. .+.+..+++.++|.|.....+
T Consensus 165 rSRc~~i~f~~~~~~~i~~~L~~~~~-----~~----~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 165 RSRCRHVALRTPSVEAVAEVLVRRDG-----VD----PETARRAARASQGHIGRARRL 213 (394)
T ss_pred HhhCeEEECCCCCHHHHHHHHHHhcC-----CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 34467999999999999988875321 11 233677899999998655433
No 95
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=7.1e-08 Score=93.15 Aligned_cols=37 Identities=22% Similarity=0.091 Sum_probs=18.3
Q ss_pred CCCCccEEEEeccCCCCC--CCCCCCCCCCCeeeecCCC
Q 035555 614 SLTNLRYLSLSLFKNCEQ--LLPLGKLQSLEYLQIGGMH 650 (767)
Q Consensus 614 ~l~~L~~L~L~~~~~~~~--l~~l~~l~~L~~L~L~~~~ 650 (767)
.+++|..|+|++|..++. ...+.+++-|++|.++.|.
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 445555555555544432 1124445555555555554
No 96
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.23 E-value=2.9e-05 Score=76.05 Aligned_cols=178 Identities=12% Similarity=0.150 Sum_probs=95.5
Q ss_pred cccch-hHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccch-----hhhhhhHHHHHHHHHHHhhCCC
Q 035555 99 IFGRE-KEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDV-----KKILRKEYGIARAIIEALTYSS 172 (767)
Q Consensus 99 ~vGr~-~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~-----~~~F~~~~~i~~~i~~~l~~~~ 172 (767)
++|.. +..-...+.+....+ .....+.|+|..|+|||.|.+++++.... +-.|-...+....+...+..
T Consensus 11 v~g~~N~~a~~~~~~ia~~~~---~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~-- 85 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENPG---ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRD-- 85 (219)
T ss_dssp --TTTTHHHHHHHHHHHHSTT---TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHT--
T ss_pred CcCCcHHHHHHHHHHHHhcCC---CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHc--
Confidence 34642 333344444544322 23456889999999999999999984211 11111145555566555543
Q ss_pred CCccchHHHHHHHHHhcCCCeEEEEEeCCCCcCh-hhHHH-HHHhhhcC-CCCcEEEEEcCc---------hhHHhhhcC
Q 035555 173 SNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNEDF-YKWEQ-FYNCLKTC-LHGSKILITTRK---------ETVARIMGS 240 (767)
Q Consensus 173 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-~~~~~-l~~~l~~~-~~gs~ilvTtR~---------~~v~~~~~~ 240 (767)
....+. .+.++ .-=+|++||++.-.. ..|.. +...+... ..|.+||+|++. +++...+..
T Consensus 86 ---~~~~~~----~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~ 157 (219)
T PF00308_consen 86 ---GEIEEF----KDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSW 157 (219)
T ss_dssp ---TSHHHH----HHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHC
T ss_pred ---ccchhh----hhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhh
Confidence 112222 23333 234789999964322 23333 33333221 346689999965 233445566
Q ss_pred cceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHH
Q 035555 241 ADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAK 293 (767)
Q Consensus 241 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 293 (767)
.-.+++++.+.++..+++.+++...... --++++.-|++.+.+..-.+.
T Consensus 158 Gl~~~l~~pd~~~r~~il~~~a~~~~~~----l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 158 GLVVELQPPDDEDRRRILQKKAKERGIE----LPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp SEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHH
T ss_pred cchhhcCCCCHHHHHHHHHHHHHHhCCC----CcHHHHHHHHHhhcCCHHHHH
Confidence 7789999999999999999887433221 123445666666655444443
No 97
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=3.4e-05 Score=87.31 Aligned_cols=190 Identities=15% Similarity=0.141 Sum_probs=113.6
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchh---hhhh--hHHHHHHHHHHHhhC
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVK---KILR--KEYGIARAIIEALTY 170 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~---~~F~--~~~~i~~~i~~~l~~ 170 (767)
-.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-. ..+. ......+.+......
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~ 89 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAV 89 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCC
Confidence 3579999999999988886432 34567899999999999999987632100 0000 012223333221111
Q ss_pred C-----CCCccchHHH---HHHHHHh-cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCc-hhHH-hhhc
Q 035555 171 S-----SSNFVEFQSL---MQHIQKH-VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRK-ETVA-RIMG 239 (767)
Q Consensus 171 ~-----~~~~~~~~~~---~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~-~~~~ 239 (767)
. .......+++ .+.+... ..+++-++|+|++........+.+...+......+.+|++|.+ ..+. ....
T Consensus 90 d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~S 169 (585)
T PRK14950 90 DVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILS 169 (585)
T ss_pred eEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHh
Confidence 0 0011222222 2222211 1245678999999766666777788877766566666666544 3332 2233
Q ss_pred CcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHH
Q 035555 240 SADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKT 294 (767)
Q Consensus 240 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 294 (767)
....+.+..++.++....+...+...+... ..+.+..|++.++|.+..+..
T Consensus 170 R~~~i~f~~l~~~el~~~L~~~a~~egl~i----~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 170 RCQRFDFHRHSVADMAAHLRKIAAAEGINL----EPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred ccceeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 456888999999998888877653322211 124577899999998865443
No 98
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.16 E-value=1.1e-05 Score=80.42 Aligned_cols=176 Identities=15% Similarity=0.171 Sum_probs=100.8
Q ss_pred CccccchhHHHH--HHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCC
Q 035555 97 SEIFGREKEKSE--LVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSN 174 (767)
Q Consensus 97 ~~~vGr~~~~~~--l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~ 174 (767)
.++||.+..+.+ ++.-+.+ +.....+.+||++|+||||||+.+.+.......|-. .+......
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ie-----q~~ipSmIlWGppG~GKTtlArlia~tsk~~Syrfv----------elSAt~a~ 202 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIE-----QNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFV----------ELSATNAK 202 (554)
T ss_pred HHhcchhhhcCcchHHHHHHH-----cCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEE----------EEeccccc
Confidence 346666655433 2222222 236678889999999999999999885333322211 00111112
Q ss_pred ccchHHHHHHHHH--hcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEE--EcCchhHH---hhhcCcceEecC
Q 035555 175 FVEFQSLMQHIQK--HVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILI--TTRKETVA---RIMGSADIISVN 247 (767)
Q Consensus 175 ~~~~~~~~~~l~~--~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v~---~~~~~~~~~~l~ 247 (767)
..+..++.+.-++ .+.++|..|++|.|...+..+-+ .++|.-..|.-++| ||-+.... ..+..+.++.++
T Consensus 203 t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLe 279 (554)
T KOG2028|consen 203 TNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLE 279 (554)
T ss_pred hHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCccchhHHHHhccceeEec
Confidence 2233333333222 34578999999999765443333 34555556876776 55554332 234557899999
Q ss_pred CCChhHHHHHHHHhcC---CCCC---Ccch---hhHHHHHHHHHhhcCCCcc
Q 035555 248 VLSETECWLVFESLGF---SGKS---MEER---ENLEKIGREIIRKCKGLPL 290 (767)
Q Consensus 248 ~L~~~~~~~l~~~~~~---~~~~---~~~~---~~~~~~~~~i~~~~~g~PL 290 (767)
.|..++-..++.+... .... ..+. .-...+.+-++..|.|-.-
T Consensus 280 kL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 280 KLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred cCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 9999999998887421 1111 1111 1233566667777887664
No 99
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=4.3e-05 Score=85.67 Aligned_cols=193 Identities=14% Similarity=0.124 Sum_probs=112.9
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhh-----------hh-HHHHHHH
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKIL-----------RK-EYGIARA 163 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F-----------~~-~~~i~~~ 163 (767)
-.+++|.+..++.|...+.... -...+.++|+.|+||||+|+.+.+...-...+ .+ .....+.
T Consensus 15 f~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~ 89 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRD 89 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHH
Confidence 3578999999999999886532 33558899999999999998887631110000 00 1111111
Q ss_pred HHHHhhCC-----CCCccchHHHHHHHHHh----cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEE-EcCchh
Q 035555 164 IIEALTYS-----SSNFVEFQSLMQHIQKH----VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILI-TTRKET 233 (767)
Q Consensus 164 i~~~l~~~-----~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~ 233 (767)
+...-... .......+++...+... ..+++-++|+|++........+.+...+..-...+.+|+ |++...
T Consensus 90 ~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~k 169 (620)
T PRK14954 90 FDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (620)
T ss_pred HhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 11100000 00111133333322222 234566899999987776777888888877555565554 444344
Q ss_pred HH-hhhcCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCc-chHHHHHh
Q 035555 234 VA-RIMGSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLP-LVAKTIAS 297 (767)
Q Consensus 234 v~-~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~ 297 (767)
+. ........+++.+++.++....+.+.+-..+... ..+.+..|++.++|.. .|+..+-.
T Consensus 170 Ll~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I----~~eal~~La~~s~Gdlr~al~eLeK 231 (620)
T PRK14954 170 IPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI----DADALQLIARKAQGSMRDAQSILDQ 231 (620)
T ss_pred hhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 43 3344577899999999998888776543222111 1234778999999855 45554443
No 100
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=5.9e-05 Score=80.87 Aligned_cols=184 Identities=14% Similarity=0.177 Sum_probs=108.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccch------hhhhhhHHHHHHHHHHHhh
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDV------KKILRKEYGIARAIIEALT 169 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~------~~~F~~~~~i~~~i~~~l~ 169 (767)
-.+++|.+..++.+.+.+.... -.+.+.++|+.|+||||+|+.+.+...- ...|.. .+ +.
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~------~~---~~ 81 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF------NI---FE 81 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc------ce---EE
Confidence 3568999999999999986532 3468889999999999999998763110 001110 00 00
Q ss_pred CCCCCccchHHHHHHHHHh----cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEc-CchhHH-hhhcCcce
Q 035555 170 YSSSNFVEFQSLMQHIQKH----VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITT-RKETVA-RIMGSADI 243 (767)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~-~~~~~~~~ 243 (767)
.........+++...+... ..+++-++|+|++.......+..+...+......+.+|++| ....+. ........
T Consensus 82 l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~ 161 (367)
T PRK14970 82 LDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQI 161 (367)
T ss_pred eccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhccee
Confidence 0001111122332222211 12455689999997655556777777665544445555554 333332 22334568
Q ss_pred EecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcc-hHHHHHh
Q 035555 244 ISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPL-VAKTIAS 297 (767)
Q Consensus 244 ~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~ 297 (767)
++..+++.++....+...+...+..-. .+.+..+++.++|.+- |+..+-.
T Consensus 162 v~~~~~~~~~l~~~l~~~~~~~g~~i~----~~al~~l~~~~~gdlr~~~~~lek 212 (367)
T PRK14970 162 FDFKRITIKDIKEHLAGIAVKEGIKFE----DDALHIIAQKADGALRDALSIFDR 212 (367)
T ss_pred EecCCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhCCCCHHHHHHHHHH
Confidence 899999999998888876543222111 2457778888888654 4444433
No 101
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=2.7e-05 Score=85.91 Aligned_cols=188 Identities=14% Similarity=0.105 Sum_probs=110.7
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhh---h-HHHHHHHHHHHhh--
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILR---K-EYGIARAIIEALT-- 169 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~-~~~i~~~i~~~l~-- 169 (767)
-.++||-+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-...+. + .......|...-.
T Consensus 15 f~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d 89 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD 89 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce
Confidence 3568999999999999996542 345678999999999999998876311000000 0 1111111111000
Q ss_pred ---CCCCCccchHHHHHHHHH----hcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCc-hhHH-hhhcC
Q 035555 170 ---YSSSNFVEFQSLMQHIQK----HVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRK-ETVA-RIMGS 240 (767)
Q Consensus 170 ---~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~-~~~~~ 240 (767)
.........+++.+.+.. -..++.-++|+|+|..........++..+......+++|++|.+ ..+. .....
T Consensus 90 ~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SR 169 (509)
T PRK14958 90 LFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSR 169 (509)
T ss_pred EEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHH
Confidence 000111223333222221 11356668999999877777888888888776566766665544 3332 23344
Q ss_pred cceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchH
Q 035555 241 ADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVA 292 (767)
Q Consensus 241 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 292 (767)
...+++.+++.++....+.+.+-..+.... .+....|++.++|.+..+
T Consensus 170 c~~~~f~~l~~~~i~~~l~~il~~egi~~~----~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 170 CLQFHLAQLPPLQIAAHCQHLLKEENVEFE----NAALDLLARAANGSVRDA 217 (509)
T ss_pred hhhhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHH
Confidence 668899999999987776655432222111 233667888888877443
No 102
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.14 E-value=5.2e-05 Score=72.80 Aligned_cols=159 Identities=13% Similarity=0.104 Sum_probs=93.4
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcccchhhhhh---h-HHHHHHHHHHHhh------CCCCCccchHHH---HHHHHHh-
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNNDDVKKILR---K-EYGIARAIIEALT------YSSSNFVEFQSL---MQHIQKH- 188 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~-~~~i~~~i~~~l~------~~~~~~~~~~~~---~~~l~~~- 188 (767)
-...+.++|+.|+||||+|+.+.+...-..... + .......+...-. .........+++ .+.+...
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc
Confidence 346789999999999999988866311110000 0 0000111110000 000011122333 2222221
Q ss_pred cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCch-hHHh-hhcCcceEecCCCChhHHHHHHHHhcCCCC
Q 035555 189 VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKE-TVAR-IMGSADIISVNVLSETECWLVFESLGFSGK 266 (767)
Q Consensus 189 l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~ 266 (767)
..+.+-++|+||+.......++.+...+....+.+.+|++|++. .+.. .......+.+.+++.++..+.+.+..
T Consensus 93 ~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g---- 168 (188)
T TIGR00678 93 QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQG---- 168 (188)
T ss_pred ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcC----
Confidence 13566789999997776667788888887766666777777653 2222 22335789999999999999988761
Q ss_pred CCcchhhHHHHHHHHHhhcCCCcch
Q 035555 267 SMEERENLEKIGREIIRKCKGLPLV 291 (767)
Q Consensus 267 ~~~~~~~~~~~~~~i~~~~~g~PLa 291 (767)
. . .+.+..|++.++|.|..
T Consensus 169 i--~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 I--S----EEAAELLLALAGGSPGA 187 (188)
T ss_pred C--C----HHHHHHHHHHcCCCccc
Confidence 1 1 24588899999998853
No 103
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=5.3e-05 Score=84.84 Aligned_cols=189 Identities=14% Similarity=0.155 Sum_probs=114.3
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhh-------hhh--hHHHHHHHHHH
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKK-------ILR--KEYGIARAIIE 166 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~-------~F~--~~~~i~~~i~~ 166 (767)
-.+++|.+..++.|...+.... -..-+.++|+.|+||||+|+.+.+...-.. .++ ....-.+.|..
T Consensus 23 f~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~ 97 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIME 97 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhc
Confidence 4579999999999999887542 345688999999999999999876311000 000 01111222222
Q ss_pred HhhC-----CCCCccchHH---HHHHHHHh-cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEc-CchhHH-
Q 035555 167 ALTY-----SSSNFVEFQS---LMQHIQKH-VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITT-RKETVA- 235 (767)
Q Consensus 167 ~l~~-----~~~~~~~~~~---~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~- 235 (767)
.-.. ........++ +...++.. ..+++-++|+|++........+.+...+..-...+.+|++| ....+.
T Consensus 98 g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 98 GRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhH
Confidence 1100 0001112233 22222211 12455689999997777677788888887766666666555 333332
Q ss_pred hhhcCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHH
Q 035555 236 RIMGSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAK 293 (767)
Q Consensus 236 ~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 293 (767)
.....+..+++..++.++....+.+.+-..+.... .+....|++.++|.+.-+.
T Consensus 178 tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~----~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 178 TVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE----DEALALIARAAEGSVRDGL 231 (598)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 23344678999999999999988876533222111 2447778999999885543
No 104
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.12 E-value=6.2e-05 Score=81.99 Aligned_cols=164 Identities=16% Similarity=0.138 Sum_probs=99.0
Q ss_pred CEEEEEEccCCChHHHHHHHHHccc-----chhhhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEE
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNND-----DVKKILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVL 198 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~-----~~~~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVl 198 (767)
...+.|+|..|+|||+|++++.+.. ..+-.|-...++...+...+.... .....+.+.++ ..-+||+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~~dvLiI 212 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTH-------KEIEQFKNEIC-QNDVLII 212 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhh-------hHHHHHHHHhc-cCCEEEE
Confidence 3468899999999999999998831 111122225556666666554211 11222333333 2348899
Q ss_pred eCCCCcC--hhhHHHHHHhhhcC-CCCcEEEEEcCch---------hHHhhhcCcceEecCCCChhHHHHHHHHhcCCCC
Q 035555 199 DDVWNED--FYKWEQFYNCLKTC-LHGSKILITTRKE---------TVARIMGSADIISVNVLSETECWLVFESLGFSGK 266 (767)
Q Consensus 199 Ddv~~~~--~~~~~~l~~~l~~~-~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~ 266 (767)
||+.... ....+.+...+... ..|..||+|+... .+...+...-.+++++++.++..+++.+++-..+
T Consensus 213 DDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~g 292 (450)
T PRK14087 213 DDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQN 292 (450)
T ss_pred eccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcC
Confidence 9995432 12223344444322 3445688887642 2233344566889999999999999998874322
Q ss_pred CCcchhhHHHHHHHHHhhcCCCcchHHHHHh
Q 035555 267 SMEERENLEKIGREIIRKCKGLPLVAKTIAS 297 (767)
Q Consensus 267 ~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 297 (767)
. . ..--+++...|++.+.|.|-.+.-+..
T Consensus 293 l-~-~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 293 I-K-QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred C-C-CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 1 0 012245688899999999987765543
No 105
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.10 E-value=2.1e-05 Score=84.39 Aligned_cols=179 Identities=15% Similarity=0.111 Sum_probs=95.1
Q ss_pred CccccchhHHHHHHHHHhcCCCC-------CCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhh
Q 035555 97 SEIFGREKEKSELVNRLLCESSK-------EQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALT 169 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~ 169 (767)
.++.|+++.+++|.+.+...-.. +-...+-|.++|++|+|||++|+++++. ....|-... ...+.....
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~~i~v~--~~~l~~~~~ 206 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATFIRVV--GSELVQKFI 206 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCCEEEee--hHHHhHhhc
Confidence 35789999999998876432110 1124567899999999999999999884 222222100 001111110
Q ss_pred CCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCc-----------ChhhHHHHHHhhhc---C--CCCcEEEEEcCchh
Q 035555 170 YSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE-----------DFYKWEQFYNCLKT---C--LHGSKILITTRKET 233 (767)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l~~---~--~~gs~ilvTtR~~~ 233 (767)
+ .....+...+...-...+.+|+||+++.- +......+...+.. . ..+..||.||...+
T Consensus 207 g-----~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~ 281 (389)
T PRK03992 207 G-----EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRID 281 (389)
T ss_pred c-----chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChh
Confidence 0 01111111222222346789999999531 11112223333321 1 23456777776533
Q ss_pred HHh-hh----cCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCc
Q 035555 234 VAR-IM----GSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLP 289 (767)
Q Consensus 234 v~~-~~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 289 (767)
... .+ .-...+.++..+.++..++|..+...... ..... ...+++.+.|.-
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVD----LEELAELTEGAS 337 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCC----HHHHHHHcCCCC
Confidence 211 11 11457899999999999999877533221 11122 344566666543
No 106
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=8.1e-08 Score=92.75 Aligned_cols=86 Identities=13% Similarity=0.039 Sum_probs=44.0
Q ss_pred cCCcEeeCCCCCCccc--ccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccC
Q 035555 514 RKLMYLDNDYTNSLRY--LPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEK 591 (767)
Q Consensus 514 ~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~ 591 (767)
..|++||++.. .++. +-.-+..+.+|+.|.+...... ......+..-.+|+.++++.+..++.. +..-.+.+
T Consensus 185 sRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~Ld---D~I~~~iAkN~~L~~lnlsm~sG~t~n--~~~ll~~s 258 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLD---DPIVNTIAKNSNLVRLNLSMCSGFTEN--ALQLLLSS 258 (419)
T ss_pred hhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccC---cHHHHHHhccccceeeccccccccchh--HHHHHHHh
Confidence 35888888865 3221 1111234455555544333322 334455555566666666665544332 22334555
Q ss_pred CCCcCceEEEecCC
Q 035555 592 KKNLFDLELRFDCN 605 (767)
Q Consensus 592 ~~~L~~L~l~~~~~ 605 (767)
|+.|..|+|+||..
T Consensus 259 cs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 259 CSRLDELNLSWCFL 272 (419)
T ss_pred hhhHhhcCchHhhc
Confidence 66666666666654
No 107
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.09 E-value=5.3e-05 Score=79.60 Aligned_cols=148 Identities=12% Similarity=0.124 Sum_probs=86.7
Q ss_pred CCCCCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCC
Q 035555 92 SSIDESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYS 171 (767)
Q Consensus 92 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~ 171 (767)
.|..-.+++|.++..+.+.+++... .-..++.++|++|+||||+|+.+++.. ...|-. +...
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~~--~~~~~~-----------i~~~ 77 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNEV--GAEVLF-----------VNGS 77 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHh--CccceE-----------eccC
Confidence 3334567999999999999998643 235678889999999999999998742 111110 0000
Q ss_pred CCCccchHHHHHHHHHhc-----CCCeEEEEEeCCCCc-ChhhHHHHHHhhhcCCCCcEEEEEcCchh-H-HhhhcCcce
Q 035555 172 SSNFVEFQSLMQHIQKHV-----AGKKLLLVLDDVWNE-DFYKWEQFYNCLKTCLHGSKILITTRKET-V-ARIMGSADI 243 (767)
Q Consensus 172 ~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v-~~~~~~~~~ 243 (767)
. ...+.+...+..+. .+.+-++|+|++... .......+...+.....++++|+||.... + .........
T Consensus 78 ~---~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 78 D---CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred c---ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceE
Confidence 0 00111111121111 234568999999654 22333445555655566788888887532 1 112223456
Q ss_pred EecCCCChhHHHHHHHH
Q 035555 244 ISVNVLSETECWLVFES 260 (767)
Q Consensus 244 ~~l~~L~~~~~~~l~~~ 260 (767)
+.++..+.++..+++..
T Consensus 155 i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 155 IDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 67777777777665543
No 108
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=0.00011 Score=81.94 Aligned_cols=196 Identities=13% Similarity=0.091 Sum_probs=117.8
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhh---hh-HHHHHHHHHHHhh--
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKIL---RK-EYGIARAIIEALT-- 169 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~-~~~i~~~i~~~l~-- 169 (767)
-.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-.... .+ .....+.|...-.
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~ 86 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGS 86 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCC
Confidence 3578999999999999987532 34567899999999999999987631100000 11 1111222221100
Q ss_pred -------CC-CCCccchHHHHHHHHHh-cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEc-CchhHH-hhh
Q 035555 170 -------YS-SSNFVEFQSLMQHIQKH-VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITT-RKETVA-RIM 238 (767)
Q Consensus 170 -------~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~-~~~ 238 (767)
.. .....+..++.+.+... ..+++-++|+|++..........++..+......+.+|++| ....+. ...
T Consensus 87 ~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~ 166 (584)
T PRK14952 87 IDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIR 166 (584)
T ss_pred ceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHH
Confidence 00 01112222232222211 13566689999998877788888888888765566555554 444443 334
Q ss_pred cCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCc-chHHHHHhHHh
Q 035555 239 GSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLP-LVAKTIASLLR 300 (767)
Q Consensus 239 ~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~~l~ 300 (767)
.....++..+++.++..+.+.+.+-..+.... .+.+..|++..+|.+ -|+..+-.++.
T Consensus 167 SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~----~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 167 SRTHHYPFRLLPPRTMRALIARICEQEGVVVD----DAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred HhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 44678999999999998888775533222111 234677888999876 45566555543
No 109
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=5.4e-05 Score=83.93 Aligned_cols=191 Identities=14% Similarity=0.100 Sum_probs=116.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhh---hhhh-HHHHHHHHHHHhhCC
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKK---ILRK-EYGIARAIIEALTYS 171 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~-~~~i~~~i~~~l~~~ 171 (767)
-.+++|.+..++.|...+.... -...+.++|+.|+||||+|+.+.+...-.. ...+ .....+.|.. +.
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~---g~ 86 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQ---GM 86 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhc---CC
Confidence 3568999999888888886432 346788999999999999998877421100 0011 1111222211 11
Q ss_pred CCC--------ccchHHHHHHHHHhc-----CCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCc-hhHH-h
Q 035555 172 SSN--------FVEFQSLMQHIQKHV-----AGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRK-ETVA-R 236 (767)
Q Consensus 172 ~~~--------~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~-~ 236 (767)
... ....+++ +.+.+.+ .+++-++|+|++.......+..+...+........+|++|.+ ..+. .
T Consensus 87 hpDv~eId~a~~~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~T 165 (624)
T PRK14959 87 HVDVVEIDGASNRGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVT 165 (624)
T ss_pred CCceEEEecccccCHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHH
Confidence 110 1112222 2222222 356679999999877777778888888654445555555544 4443 2
Q ss_pred hhcCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCc-chHHHHHhHH
Q 035555 237 IMGSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLP-LVAKTIASLL 299 (767)
Q Consensus 237 ~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~~l 299 (767)
.......+++.+++.++....+...+....... ..+.++.|++.++|.+ .|+..+...+
T Consensus 166 I~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i----d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 166 IVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY----DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHhhhhccccCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 234456889999999999988887553322111 1244777888898854 6777776554
No 110
>PRK06620 hypothetical protein; Validated
Probab=98.09 E-value=0.00012 Score=71.32 Aligned_cols=135 Identities=13% Similarity=0.048 Sum_probs=77.1
Q ss_pred EEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE 204 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 204 (767)
+.+.|+|++|+|||+|++++++... ..|...... .+ +..+ ..-+|++||+...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~~~~~-----------------~~-------~~~~-~~d~lliDdi~~~ 97 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--AYIIKDIFF-----------------NE-------EILE-KYNAFIIEDIENW 97 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--CEEcchhhh-----------------ch-------hHHh-cCCEEEEeccccc
Confidence 5789999999999999999887532 122110000 00 0111 2347889999532
Q ss_pred ChhhHHHHHHhhhcCCCCcEEEEEcCchh-------HHhhhcCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHH
Q 035555 205 DFYKWEQFYNCLKTCLHGSKILITTRKET-------VARIMGSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKI 277 (767)
Q Consensus 205 ~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-------v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 277 (767)
.....-.+...+. ..|..||+|++... ....+...-.+++++++.++-..++.+.+.... .. --+++
T Consensus 98 ~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~-l~---l~~ev 171 (214)
T PRK06620 98 QEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS-VT---ISRQI 171 (214)
T ss_pred hHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC-CC---CCHHH
Confidence 1111112222222 34668999998532 233344456899999999998888877653211 11 11344
Q ss_pred HHHHHhhcCCCcchH
Q 035555 278 GREIIRKCKGLPLVA 292 (767)
Q Consensus 278 ~~~i~~~~~g~PLai 292 (767)
..-|++.+.|---.+
T Consensus 172 ~~~L~~~~~~d~r~l 186 (214)
T PRK06620 172 IDFLLVNLPREYSKI 186 (214)
T ss_pred HHHHHHHccCCHHHH
Confidence 666777666654433
No 111
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=8.4e-05 Score=81.45 Aligned_cols=190 Identities=12% Similarity=0.059 Sum_probs=114.7
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccc--hhhhh-hh-HHHHHHHHHHHhh--
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDD--VKKIL-RK-EYGIARAIIEALT-- 169 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~--~~~~F-~~-~~~i~~~i~~~l~-- 169 (767)
-.+++|-+..++.|...+.... -.....++|+.|+||||+|+.+.+..- ....+ .+ ...-...+.....
T Consensus 13 fdeiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d 87 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID 87 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe
Confidence 3578999999999999886432 345678999999999999998765310 00000 00 1111111111100
Q ss_pred ---CCCCCccchHHHHHHHHHh----cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCch-hHH-hhhcC
Q 035555 170 ---YSSSNFVEFQSLMQHIQKH----VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKE-TVA-RIMGS 240 (767)
Q Consensus 170 ---~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~-~~~~~ 240 (767)
.........+++.+.+... ..+++-++|+|++..........++..+......+++|++|.+. .+. .....
T Consensus 88 v~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SR 167 (535)
T PRK08451 88 IIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSR 167 (535)
T ss_pred EEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhh
Confidence 0001111234444433321 12456689999998877778888888887766667766666552 222 22334
Q ss_pred cceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHH
Q 035555 241 ADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKT 294 (767)
Q Consensus 241 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 294 (767)
...+++.+++.++....+.+.+-..+... ..+.+..|++.++|.+.-+..
T Consensus 168 c~~~~F~~Ls~~ei~~~L~~Il~~EGi~i----~~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 168 TQHFRFKQIPQNSIISHLKTILEKEGVSY----EPEALEILARSGNGSLRDTLT 217 (535)
T ss_pred ceeEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHHH
Confidence 67899999999999888876653322211 134577899999998854433
No 112
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.08 E-value=9.3e-07 Score=87.76 Aligned_cols=117 Identities=21% Similarity=0.135 Sum_probs=67.9
Q ss_pred hhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCc-----cCCccccCCCCccEEEEeccCCCCCCC--
Q 035555 561 LKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNV-----IPKNWIMSLTNLRYLSLSLFKNCEQLL-- 633 (767)
Q Consensus 561 l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~p~~~~~l~~L~~L~L~~~~~~~~l~-- 633 (767)
++..+.|+.+.+.....-+....+....+..+++|+.|+|..|-+. .+...+..+++|+.|++++|..-..-.
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence 3444555555555432222222455667788888888888887663 233334456899999999996433211
Q ss_pred ---C-CCCCCCCCeeeecCCCCceEecccc-cCCCCCCCCccccCCcccceeeccCcc
Q 035555 634 ---P-LGKLQSLEYLQIGGMHGVKRVGNEF-LGVESDTNGSSVIAFPKLRELKFSYME 686 (767)
Q Consensus 634 ---~-l~~l~~L~~L~L~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~L~~~~ 686 (767)
. -...|+|+.|.+.+|. ++.-.... ..+ ....|.|+.|.|++|.
T Consensus 261 ~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~--------~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNE-ITRDAALALAAC--------MAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHhccCCCCceeccCcch-hHHHHHHHHHHH--------HhcchhhHHhcCCccc
Confidence 1 2347888999888876 22211111 000 1246777777777763
No 113
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=7.5e-05 Score=86.53 Aligned_cols=193 Identities=12% Similarity=0.082 Sum_probs=116.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhh--h-hh-HHHHHHHHHHHhhC--
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKI--L-RK-EYGIARAIIEALTY-- 170 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~--F-~~-~~~i~~~i~~~l~~-- 170 (767)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-... . .| ...-.+.|...-..
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 468999999999999987542 3356789999999999999998764210000 0 01 11112222111000
Q ss_pred -----CCCCccchHHHHHHHHHh-----cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcC-chhHH-hhh
Q 035555 171 -----SSSNFVEFQSLMQHIQKH-----VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTR-KETVA-RIM 238 (767)
Q Consensus 171 -----~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR-~~~v~-~~~ 238 (767)
........+++.+ +.+. ..++.-++|||++.......++.|+..+..-...+.+|++|. ...+. ...
T Consensus 90 dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIr 168 (824)
T PRK07764 90 DVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIR 168 (824)
T ss_pred cEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHH
Confidence 0001112233222 2221 235666899999988888888889999987666666665554 34443 334
Q ss_pred cCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcc-hHHHHHhHH
Q 035555 239 GSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPL-VAKTIASLL 299 (767)
Q Consensus 239 ~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~~l 299 (767)
.....|++..++.++..+++.+..-..+... ..+....|++.++|.+. ++..+-.++
T Consensus 169 SRc~~v~F~~l~~~~l~~~L~~il~~EGv~i----d~eal~lLa~~sgGdlR~Al~eLEKLi 226 (824)
T PRK07764 169 SRTHHYPFRLVPPEVMRGYLERICAQEGVPV----EPGVLPLVIRAGGGSVRDSLSVLDQLL 226 (824)
T ss_pred hheeEEEeeCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4577899999999998888877542222111 12336678999999773 444444433
No 114
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.07 E-value=0.00015 Score=72.13 Aligned_cols=150 Identities=16% Similarity=0.133 Sum_probs=84.4
Q ss_pred CEEEEEEccCCChHHHHHHHHHcccchh---hhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeC
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNNDDVK---KILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDD 200 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDd 200 (767)
.+.+.|+|+.|+|||+|++++++..... ..|-....... ...+..+.+.+ --+|++||
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------------~~~~~~~~~~~-----~dlliiDd 105 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------------FVPEVLEGMEQ-----LSLVCIDN 105 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------------hhHHHHHHhhh-----CCEEEEeC
Confidence 3578999999999999999988732110 11211111000 01111122211 23789999
Q ss_pred CCCcC-hhhHHH-HHHhhhcC-CCC-cEEEEEcCch---------hHHhhhcCcceEecCCCChhHHHHHHHHhcCCCCC
Q 035555 201 VWNED-FYKWEQ-FYNCLKTC-LHG-SKILITTRKE---------TVARIMGSADIISVNVLSETECWLVFESLGFSGKS 267 (767)
Q Consensus 201 v~~~~-~~~~~~-l~~~l~~~-~~g-s~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~ 267 (767)
+.... ...|.. +...+... ..| .++|+||+.. ++...+.....+++.+++.++-.+++.+++....-
T Consensus 106 i~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~ 185 (235)
T PRK08084 106 IECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGF 185 (235)
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCC
Confidence 95432 134443 22333221 123 3688998853 33344555679999999999999998876533211
Q ss_pred CcchhhHHHHHHHHHhhcCCCcchHHHHH
Q 035555 268 MEERENLEKIGREIIRKCKGLPLVAKTIA 296 (767)
Q Consensus 268 ~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 296 (767)
. --+++..-|++.+.|..-++..+-
T Consensus 186 -~---l~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 186 -E---LPEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred -C---CCHHHHHHHHHhhcCCHHHHHHHH
Confidence 1 123456678887777665554333
No 115
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=3.6e-05 Score=85.48 Aligned_cols=194 Identities=12% Similarity=0.124 Sum_probs=112.8
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhh---hh-HHHHHHHHHHH-----
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKIL---RK-EYGIARAIIEA----- 167 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~-~~~i~~~i~~~----- 167 (767)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-.... .+ .......+...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468999999999999887542 34567899999999999999987631100000 00 00111111100
Q ss_pred hhCCCCCccchHHHHHHHHHh----cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCc-hhHH-hhhcCc
Q 035555 168 LTYSSSNFVEFQSLMQHIQKH----VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRK-ETVA-RIMGSA 241 (767)
Q Consensus 168 l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~-~~~~~~ 241 (767)
+..........+++.+.+... ..+++-++|+|++..........+...+......+.+|++|.+ ..+. .....+
T Consensus 91 ~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc 170 (527)
T PRK14969 91 IEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRC 170 (527)
T ss_pred eEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHH
Confidence 000001111222322222211 1356679999999877766777888888775555656655543 3332 223346
Q ss_pred ceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcc-hHHHHHhHH
Q 035555 242 DIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPL-VAKTIASLL 299 (767)
Q Consensus 242 ~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~~l 299 (767)
..+++.+++.++..+.+.+.+-..+... ..+....|++.++|.+- |+..+-..+
T Consensus 171 ~~~~f~~l~~~~i~~~L~~il~~egi~~----~~~al~~la~~s~Gslr~al~lldqai 225 (527)
T PRK14969 171 LQFNLKQMPPPLIVSHLQHILEQENIPF----DATALQLLARAAAGSMRDALSLLDQAI 225 (527)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7889999999999888877553222111 12346778899999774 555544433
No 116
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=9.5e-05 Score=80.58 Aligned_cols=193 Identities=13% Similarity=0.135 Sum_probs=110.6
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchh---hh-hhh-HHHHHHHHHHH---
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVK---KI-LRK-EYGIARAIIEA--- 167 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~---~~-F~~-~~~i~~~i~~~--- 167 (767)
-.+++|.+..++.+...+.... -...+.++|+.|+||||+|+.+.+...-. .. -.+ .....+.+...
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~ 90 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSL 90 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCC
Confidence 3578999999999999886432 34568899999999999998886631100 00 000 00011111100
Q ss_pred ----hhCC-CCCccchHHHHHHHHH-hcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCc-hhHH-hhhc
Q 035555 168 ----LTYS-SSNFVEFQSLMQHIQK-HVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRK-ETVA-RIMG 239 (767)
Q Consensus 168 ----l~~~-~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~-~~~~ 239 (767)
+.+. .....+..++.+.+.. -..+++-++|+|++........+.+...+......+.+|++|.+ ..+. ....
T Consensus 91 d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~s 170 (451)
T PRK06305 91 DVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILS 170 (451)
T ss_pred ceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHH
Confidence 0000 0011122222222211 12256778999999766555666777777765556666666543 3332 2234
Q ss_pred CcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCc-chHHHHHh
Q 035555 240 SADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLP-LVAKTIAS 297 (767)
Q Consensus 240 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~ 297 (767)
....+++.++++++....+.+.+-..+... ..+.+..|++.++|.+ .|+..+-+
T Consensus 171 Rc~~v~f~~l~~~el~~~L~~~~~~eg~~i----~~~al~~L~~~s~gdlr~a~~~Lek 225 (451)
T PRK06305 171 RCQKMHLKRIPEETIIDKLALIAKQEGIET----SREALLPIARAAQGSLRDAESLYDY 225 (451)
T ss_pred hceEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 467899999999999888877653222111 1234778999999865 45554443
No 117
>PRK05642 DNA replication initiation factor; Validated
Probab=98.06 E-value=9.3e-05 Score=73.48 Aligned_cols=152 Identities=14% Similarity=0.163 Sum_probs=85.8
Q ss_pred CEEEEEEccCCChHHHHHHHHHcccc---hhhhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeC
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNNDD---VKKILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDD 200 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~~---~~~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDd 200 (767)
...+.|+|..|+|||.|++++++... .+..|-...++... ... +.+.+++-. +||+||
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------------~~~----~~~~~~~~d-~LiiDD 105 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------------GPE----LLDNLEQYE-LVCLDD 105 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------------hHH----HHHhhhhCC-EEEEec
Confidence 35789999999999999999986311 01111111111110 011 222222222 688999
Q ss_pred CCCc-ChhhHHH-HHHhhhcC-CCCcEEEEEcCchh---------HHhhhcCcceEecCCCChhHHHHHHHHhcCCCCCC
Q 035555 201 VWNE-DFYKWEQ-FYNCLKTC-LHGSKILITTRKET---------VARIMGSADIISVNVLSETECWLVFESLGFSGKSM 268 (767)
Q Consensus 201 v~~~-~~~~~~~-l~~~l~~~-~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~ 268 (767)
+... ....|.. +...+... ..|..||+|++... +...+.....+++++++.++-.+++..++.....
T Consensus 106 i~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~- 184 (234)
T PRK05642 106 LDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGL- 184 (234)
T ss_pred hhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC-
Confidence 9532 1234443 44444322 34667899887522 2223344568899999999999998866533211
Q ss_pred cchhhHHHHHHHHHhhcCCCcchHHHHHhH
Q 035555 269 EERENLEKIGREIIRKCKGLPLVAKTIASL 298 (767)
Q Consensus 269 ~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 298 (767)
.. -+++..-|++.+.|-.-++..+-..
T Consensus 185 ~l---~~ev~~~L~~~~~~d~r~l~~~l~~ 211 (234)
T PRK05642 185 HL---TDEVGHFILTRGTRSMSALFDLLER 211 (234)
T ss_pred CC---CHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 11 1355677888777766555444333
No 118
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=0.00012 Score=82.57 Aligned_cols=190 Identities=15% Similarity=0.107 Sum_probs=112.7
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhh-hhhh-HHHHHHHHHHHhhCCC-
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKK-ILRK-EYGIARAIIEALTYSS- 172 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~-~~~i~~~i~~~l~~~~- 172 (767)
-.+++|.+..++.|...+.... -.+.+.++|+.|+||||+|+.+++..--.. .... ........ .+...
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~---~~~~~D 88 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN---VNNSLD 88 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh---hcCCCc
Confidence 3568999999999999986542 356678999999999999998876310000 0000 00001100 01000
Q ss_pred ---------CCccchHHHHHHHHHh-cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEE-EEcCchhHH-hhhcC
Q 035555 173 ---------SNFVEFQSLMQHIQKH-VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKIL-ITTRKETVA-RIMGS 240 (767)
Q Consensus 173 ---------~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il-vTtR~~~v~-~~~~~ 240 (767)
....+..++.+.+... ..+++-++|+|++.......+..++..+......+.+| +|++...+. .....
T Consensus 89 vieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SR 168 (725)
T PRK07133 89 IIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSR 168 (725)
T ss_pred EEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhh
Confidence 0011122333322221 12566699999998777778888888887654455544 555444443 33444
Q ss_pred cceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCc-chHHHHHh
Q 035555 241 ADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLP-LVAKTIAS 297 (767)
Q Consensus 241 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~ 297 (767)
+..+++.+++.++....+...+-..+.... .+.+..|++.++|.+ .|+..+-.
T Consensus 169 cq~ieF~~L~~eeI~~~L~~il~kegI~id----~eAl~~LA~lS~GslR~AlslLek 222 (725)
T PRK07133 169 VQRFNFRRISEDEIVSRLEFILEKENISYE----KNALKLIAKLSSGSLRDALSIAEQ 222 (725)
T ss_pred ceeEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 679999999999998888765422221111 234777899998866 45554443
No 119
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.04 E-value=9.2e-05 Score=71.55 Aligned_cols=126 Identities=17% Similarity=0.246 Sum_probs=76.0
Q ss_pred CCCCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCC
Q 035555 93 SIDESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSS 172 (767)
Q Consensus 93 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~ 172 (767)
+++-.+++|.|++++.|++-...=-. +.+..-|.+||..|.|||++++++.+...-.. ++.+....
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~y~~~G------------LRlIev~k 88 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNEYADQG------------LRLIEVSK 88 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHHHhhcC------------ceEEEECH
Confidence 34556799999999988874432111 12445688899999999999999987321111 11122222
Q ss_pred CCccchHHHHHHHHHhcCCCeEEEEEeCCC-CcChhhHHHHHHhhhcC---CCCcEEE-EEcCchhH
Q 035555 173 SNFVEFQSLMQHIQKHVAGKKLLLVLDDVW-NEDFYKWEQFYNCLKTC---LHGSKIL-ITTRKETV 234 (767)
Q Consensus 173 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~-~~~~~~~~~l~~~l~~~---~~gs~il-vTtR~~~v 234 (767)
....+...+.+.|+. +..||+|++||+. ++....+..+...+..+ .|...+| .||..++.
T Consensus 89 ~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 89 EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 333445555555553 3579999999984 33445677777777643 2333344 44444433
No 120
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.03 E-value=5.6e-06 Score=62.84 Aligned_cols=57 Identities=33% Similarity=0.540 Sum_probs=48.1
Q ss_pred CcccEEeecCCccccccc-hhhcCCCCCcEEEccCCccccccCc-ccccCcCCcEeeCCCC
Q 035555 466 IHLKYLNLSSQKKIKRLP-ETLCELYNLECLAISFCTNLRQLPQ-GIGKLRKLMYLDNDYT 524 (767)
Q Consensus 466 ~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~ 524 (767)
++|++|++++|. ++.+| ..+.++++|++|++++|. +..+|. .|..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 478999999997 88887 567889999999999888 666665 6789999999999988
No 121
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=8.6e-05 Score=83.80 Aligned_cols=191 Identities=16% Similarity=0.146 Sum_probs=113.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchh---hhh-hh-HHHHHHHHHHHhh-
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVK---KIL-RK-EYGIARAIIEALT- 169 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~---~~F-~~-~~~i~~~i~~~l~- 169 (767)
-.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.....-. ... .+ ...-.+.+...-.
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~ 90 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSY 90 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCC
Confidence 3578999999999999986532 34568899999999999998876631100 000 00 0000011110000
Q ss_pred ----CCCCCccchHHHHHHHHHh----cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEE-EcCchhHH-hhhc
Q 035555 170 ----YSSSNFVEFQSLMQHIQKH----VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILI-TTRKETVA-RIMG 239 (767)
Q Consensus 170 ----~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~-~~~~ 239 (767)
.........+++...+.+. ..+++-++|+|++.......++.+...+..-...+.+|+ ||....+. ....
T Consensus 91 n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~S 170 (614)
T PRK14971 91 NIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILS 170 (614)
T ss_pred ceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHh
Confidence 0000111123333333221 124566889999988777788888888887656666555 44444443 3344
Q ss_pred CcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcc-hHHHH
Q 035555 240 SADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPL-VAKTI 295 (767)
Q Consensus 240 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 295 (767)
.+..++..+++.++....+...+-..+.... .+.+..|++.++|..- |+..+
T Consensus 171 Rc~iv~f~~ls~~ei~~~L~~ia~~egi~i~----~~al~~La~~s~gdlr~al~~L 223 (614)
T PRK14971 171 RCQIFDFNRIQVADIVNHLQYVASKEGITAE----PEALNVIAQKADGGMRDALSIF 223 (614)
T ss_pred hhheeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 4778999999999999888876533222111 2347778899988664 44444
No 122
>PF14516 AAA_35: AAA-like domain
Probab=98.02 E-value=0.001 Score=69.74 Aligned_cols=193 Identities=15% Similarity=0.121 Sum_probs=111.2
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchh--------------hhhhhHH--
Q 035555 95 DESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVK--------------KILRKEY-- 158 (767)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~--------------~~F~~~~-- 158 (767)
+.+..|.|...-+++.+.+..+ ...+.|.|+-.+|||+|...+.+..+-. ..|....
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHH
Confidence 3445678987777778777653 2489999999999999998886542111 1122233
Q ss_pred --HHHHHHHHHhhCCCCC-------ccchHHHHHHHHHhc---CCCeEEEEEeCCCCcC--hhhHHHHHHhhh---cCCC
Q 035555 159 --GIARAIIEALTYSSSN-------FVEFQSLMQHIQKHV---AGKKLLLVLDDVWNED--FYKWEQFYNCLK---TCLH 221 (767)
Q Consensus 159 --~i~~~i~~~l~~~~~~-------~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~--~~~~~~l~~~l~---~~~~ 221 (767)
.+...+.+++.....- ..........+.+++ .+++.+|++|+++.-- ....+.+...++ ....
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 4444445554432210 011122333444432 2689999999995421 111122333222 1111
Q ss_pred -----CcEEEEEcCch---hHHhh----hcCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCc
Q 035555 222 -----GSKILITTRKE---TVARI----MGSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLP 289 (767)
Q Consensus 222 -----gs~ilvTtR~~---~v~~~----~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 289 (767)
..-.++...+. ..... .+....+.|++++.+|...|+.++..... ....++|...++|+|
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~--------~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS--------QEQLEQLMDWTGGHP 233 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC--------HHHHHHHHHHHCCCH
Confidence 11122222211 11111 12245889999999999999987642211 112888999999999
Q ss_pred chHHHHHhHHhcC
Q 035555 290 LVAKTIASLLRSK 302 (767)
Q Consensus 290 Lai~~~~~~l~~~ 302 (767)
..+..++..+...
T Consensus 234 ~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 234 YLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999764
No 123
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00014 Score=82.14 Aligned_cols=188 Identities=14% Similarity=0.131 Sum_probs=111.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhh--hh---hh-HHHHHHHHHHHhhC
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKK--IL---RK-EYGIARAIIEALTY 170 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~--~F---~~-~~~i~~~i~~~l~~ 170 (767)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++..--.. .. .+ .....+.+......
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~ 90 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNAL 90 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCc
Confidence 468999999999999987542 235678999999999999999977421100 00 11 22222233221110
Q ss_pred -----CCCCccchHHHHHHHHHh----cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCc-hhHH-hhhc
Q 035555 171 -----SSSNFVEFQSLMQHIQKH----VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRK-ETVA-RIMG 239 (767)
Q Consensus 171 -----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~-~~~~ 239 (767)
........+++.+.+... ..+++-++|+|++.......+..++..+..-...+.+|++|.+ ..+. ....
T Consensus 91 D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrS 170 (620)
T PRK14948 91 DVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIIS 170 (620)
T ss_pred cEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHh
Confidence 000111222322222211 1245668999999877777788888888765455555544443 3332 2334
Q ss_pred CcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHH
Q 035555 240 SADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAK 293 (767)
Q Consensus 240 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 293 (767)
....+++..++.++....+...+...+.... .+.+..|++.++|.+..+.
T Consensus 171 Rc~~~~f~~l~~~ei~~~L~~ia~kegi~is----~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 171 RCQRFDFRRIPLEAMVQHLSEIAEKESIEIE----PEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred heeEEEecCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 4678888999999888777765432221111 2347788999999775443
No 124
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.97 E-value=0.00029 Score=71.42 Aligned_cols=153 Identities=14% Similarity=0.077 Sum_probs=77.6
Q ss_pred ccccchhHHHHHHHHHhcC--------C-CCCCCCCEEEEEEccCCChHHHHHHHHHcccc-----hhhhhhh--HHHHH
Q 035555 98 EIFGREKEKSELVNRLLCE--------S-SKEQKGPCVISLVGMGGIGKTTLAQFAYNNDD-----VKKILRK--EYGIA 161 (767)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~--------~-~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~-----~~~~F~~--~~~i~ 161 (767)
.++|.+..+++|.+..... . -...+....+.++|++|+||||+|+.+++... ....|-. ..+
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~-- 84 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD-- 84 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH--
Confidence 4788888777765432110 0 00123456788999999999999999976310 0001100 000
Q ss_pred HHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCcC--------hhhHHHHHHhhhcCCCCcEEEEEcCchh
Q 035555 162 RAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNED--------FYKWEQFYNCLKTCLHGSKILITTRKET 233 (767)
Q Consensus 162 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 233 (767)
+....-+ .........+... ..-+|++|++..-. ....+.+...+........+++++...+
T Consensus 85 --l~~~~~g-----~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~ 154 (261)
T TIGR02881 85 --LVGEYIG-----HTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDE 154 (261)
T ss_pred --hhhhhcc-----chHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcch
Confidence 0000000 0111122222222 23488999996421 1223334444444333344555554433
Q ss_pred HHh-------hhcC-cceEecCCCChhHHHHHHHHhc
Q 035555 234 VAR-------IMGS-ADIISVNVLSETECWLVFESLG 262 (767)
Q Consensus 234 v~~-------~~~~-~~~~~l~~L~~~~~~~l~~~~~ 262 (767)
... .... ...+.+++++.++-.+++.+.+
T Consensus 155 ~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~ 191 (261)
T TIGR02881 155 MDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMV 191 (261)
T ss_pred hHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHH
Confidence 211 1111 2467889999999988888765
No 125
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=0.00017 Score=80.46 Aligned_cols=190 Identities=11% Similarity=0.076 Sum_probs=113.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchh---hhhhh-HHHHHHHHHHHhhC--
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVK---KILRK-EYGIARAIIEALTY-- 170 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~-~~~i~~~i~~~l~~-- 170 (767)
.+++|-+..++.|..++.... -.+.+.++|+.|+||||+|+.+++..--. ..+.+ .....+.|...-..
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv 90 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDV 90 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCe
Confidence 478999999999999987532 44578899999999999999987742110 00111 01111112111000
Q ss_pred ---CCCCccchHHHHHHH---HHh-cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCc-hhHH-hhhcCc
Q 035555 171 ---SSSNFVEFQSLMQHI---QKH-VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRK-ETVA-RIMGSA 241 (767)
Q Consensus 171 ---~~~~~~~~~~~~~~l---~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~-~~~~~~ 241 (767)
........+++.... ... ..+++-++|+|++.......++.+...+......+.+|++|.+ ..+. ......
T Consensus 91 ~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc 170 (563)
T PRK06647 91 IEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRC 170 (563)
T ss_pred EEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhc
Confidence 000011223332222 211 2356678999999877777788888888765566666665543 3332 223346
Q ss_pred ceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcc-hHHHH
Q 035555 242 DIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPL-VAKTI 295 (767)
Q Consensus 242 ~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 295 (767)
..++..+++.++..+.+.+.+...+... -.+.+..|++.++|.+- |+..+
T Consensus 171 ~~~~f~~l~~~el~~~L~~i~~~egi~i----d~eAl~lLa~~s~GdlR~alslL 221 (563)
T PRK06647 171 QHFNFRLLSLEKIYNMLKKVCLEDQIKY----EDEALKWIAYKSTGSVRDAYTLF 221 (563)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 6789999999999888887653322211 12446778889999774 33433
No 126
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00028 Score=77.49 Aligned_cols=189 Identities=14% Similarity=0.105 Sum_probs=108.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccch--hhh-hhh-HHHHHHHHHH------
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDV--KKI-LRK-EYGIARAIIE------ 166 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~--~~~-F~~-~~~i~~~i~~------ 166 (767)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.++....- ... ..+ ...-...+..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 468999999999999986532 3456778999999999999988763110 000 000 0000000100
Q ss_pred -HhhCCC-CCccchHHHHHHHHHh-cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEc-CchhHH-hhhcCc
Q 035555 167 -ALTYSS-SNFVEFQSLMQHIQKH-VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITT-RKETVA-RIMGSA 241 (767)
Q Consensus 167 -~l~~~~-~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~-~~~~~~ 241 (767)
.+.... ....+...+.+.+... ..+++-++|+|++........+.+...+....+...+|++| +...+. ......
T Consensus 91 ~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc 170 (486)
T PRK14953 91 IEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRC 170 (486)
T ss_pred EEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhc
Confidence 000000 1111122222222211 13566799999997666666777877777655455555544 433333 223345
Q ss_pred ceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHH
Q 035555 242 DIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKT 294 (767)
Q Consensus 242 ~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 294 (767)
..+.+.+++.++....+.+.+-..+... ..+.+..|++.++|.+..+..
T Consensus 171 ~~i~f~~ls~~el~~~L~~i~k~egi~i----d~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 171 QRFIFSKPTKEQIKEYLKRICNEEKIEY----EEKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred eEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 6889999999999888887653222111 123467788889887654433
No 127
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.92 E-value=6.3e-05 Score=87.66 Aligned_cols=156 Identities=18% Similarity=0.151 Sum_probs=83.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccc---hhhhhhhHHHHH-HHHHHHhhCCC
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDD---VKKILRKEYGIA-RAIIEALTYSS 172 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~---~~~~F~~~~~i~-~~i~~~l~~~~ 172 (767)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +...+.. ..+. -.+...+.+..
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~-~~~~~~~~~~l~a~~~ 254 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKN-AKIYSLDMGSLLAGTK 254 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcC-CeEEEecHHHHhhhcc
Confidence 468999999999999887542 23467999999999999999987421 1100000 0000 00000111111
Q ss_pred CCccchHHHHHHHHHhc-CCCeEEEEEeCCCCcC---------hhhHHHHHHhhhcCCCCcEEEEEcCchhHHh------
Q 035555 173 SNFVEFQSLMQHIQKHV-AGKKLLLVLDDVWNED---------FYKWEQFYNCLKTCLHGSKILITTRKETVAR------ 236 (767)
Q Consensus 173 ~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~------ 236 (767)
...+.++....+.+.+ +.++.+|++|++..-. ...-+.+...+.. +. -++|-+|...+...
T Consensus 255 -~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-g~-i~~IgaTt~~e~~~~~~~d~ 331 (731)
T TIGR02639 255 -YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-GK-LRCIGSTTYEEYKNHFEKDR 331 (731)
T ss_pred -ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-CC-eEEEEecCHHHHHHHhhhhH
Confidence 1112223333333332 3468899999985210 1112223333332 21 24444444322211
Q ss_pred -hhcCcceEecCCCChhHHHHHHHHhc
Q 035555 237 -IMGSADIISVNVLSETECWLVFESLG 262 (767)
Q Consensus 237 -~~~~~~~~~l~~L~~~~~~~l~~~~~ 262 (767)
.......+.+++++.++..+++....
T Consensus 332 al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 332 ALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 11224578999999999999988543
No 128
>PLN03150 hypothetical protein; Provisional
Probab=97.91 E-value=1.5e-05 Score=91.06 Aligned_cols=90 Identities=24% Similarity=0.337 Sum_probs=67.5
Q ss_pred eeeeccCC--C-cccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCC
Q 035555 447 RRWRCDNY--I-KEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDY 523 (767)
Q Consensus 447 L~~l~l~~--~-~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~ 523 (767)
+..|++.. + ..+|..++++++|++|+|++|.+...+|..++.+++|+.|+|++|.....+|..+++|++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 45555552 2 35677888888888888888884457888888888888888888875567888888888888888888
Q ss_pred CCCcccccccCcC
Q 035555 524 TNSLRYLPVGIRE 536 (767)
Q Consensus 524 ~~~l~~lp~~~~~ 536 (767)
|.....+|..++.
T Consensus 500 N~l~g~iP~~l~~ 512 (623)
T PLN03150 500 NSLSGRVPAALGG 512 (623)
T ss_pred CcccccCChHHhh
Confidence 8555677766654
No 129
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.88 E-value=7.5e-05 Score=88.11 Aligned_cols=155 Identities=19% Similarity=0.130 Sum_probs=82.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccc---hhhhhhhHHHH-HHHHHHHhhCCC
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDD---VKKILRKEYGI-ARAIIEALTYSS 172 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~---~~~~F~~~~~i-~~~i~~~l~~~~ 172 (767)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +...... ..+ .-++...+.+..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~-~~i~~l~~~~l~ag~~ 251 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILED-KLVITLDIGLLLAGTK 251 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcC-CeEEEeeHHHHhccCC
Confidence 358999999999999997542 23456999999999999998877411 1000000 000 001111111211
Q ss_pred CCccchHHHHHHHH-HhcCCCeEEEEEeCCCCc-------ChhhHHHHHHhhhcCCCCcEEEEEcCchhHHhh-------
Q 035555 173 SNFVEFQSLMQHIQ-KHVAGKKLLLVLDDVWNE-------DFYKWEQFYNCLKTCLHGSKILITTRKETVARI------- 237 (767)
Q Consensus 173 ~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~-------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~------- 237 (767)
.. .+.++....+. ..-..++.+|++|++..- ...+...+..+.-..+. -++|.+|...+....
T Consensus 252 ~~-ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~-l~~IgaTt~~ey~~~ie~D~aL 329 (821)
T CHL00095 252 YR-GEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGE-LQCIGATTLDEYRKHIEKDPAL 329 (821)
T ss_pred Cc-cHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCC-cEEEEeCCHHHHHHHHhcCHHH
Confidence 11 22233222222 222357899999998411 01112222222222222 345555555443221
Q ss_pred hcCcceEecCCCChhHHHHHHHH
Q 035555 238 MGSADIISVNVLSETECWLVFES 260 (767)
Q Consensus 238 ~~~~~~~~l~~L~~~~~~~l~~~ 260 (767)
......+.+...+.++...++..
T Consensus 330 ~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 330 ERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HhcceEEecCCCCHHHHHHHHHH
Confidence 12346788888899988888764
No 130
>CHL00181 cbbX CbbX; Provisional
Probab=97.86 E-value=0.0013 Score=67.25 Aligned_cols=129 Identities=13% Similarity=0.073 Sum_probs=69.5
Q ss_pred EEEEEEccCCChHHHHHHHHHcccch-----hhhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEe
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNNDDV-----KKILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLD 199 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~~~~-----~~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlD 199 (767)
..+.++|++|+||||+|+.+++.... ...|-... ...+.....+.. .......+.+. ..-+|++|
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~--~~~l~~~~~g~~-----~~~~~~~l~~a---~ggVLfID 129 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT--RDDLVGQYIGHT-----APKTKEVLKKA---MGGVLFID 129 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec--HHHHHHHHhccc-----hHHHHHHHHHc---cCCEEEEE
Confidence 45889999999999999999763100 01111100 001111111111 11112223332 22489999
Q ss_pred CCCCc---------ChhhHHHHHHhhhcCCCCcEEEEEcCchhHHhhh--------cCcceEecCCCChhHHHHHHHHhc
Q 035555 200 DVWNE---------DFYKWEQFYNCLKTCLHGSKILITTRKETVARIM--------GSADIISVNVLSETECWLVFESLG 262 (767)
Q Consensus 200 dv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~~l~~~~~ 262 (767)
++..- ..+....+...+.....+.+||+++....+.... .....+..++++.++..+++...+
T Consensus 130 E~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l 209 (287)
T CHL00181 130 EAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIML 209 (287)
T ss_pred ccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHH
Confidence 99531 1223334555555555566777777654432211 113478999999999988888775
Q ss_pred C
Q 035555 263 F 263 (767)
Q Consensus 263 ~ 263 (767)
-
T Consensus 210 ~ 210 (287)
T CHL00181 210 E 210 (287)
T ss_pred H
Confidence 3
No 131
>PLN03150 hypothetical protein; Provisional
Probab=97.84 E-value=3.6e-05 Score=87.92 Aligned_cols=79 Identities=22% Similarity=0.320 Sum_probs=57.8
Q ss_pred cccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCcccccccCcCCcCCcccce
Q 035555 467 HLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPVGIRELIRLRRVRK 545 (767)
Q Consensus 467 ~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~ 545 (767)
.++.|+|++|.....+|..++++++|+.|+|++|.....+|..++.+++|+.|++++|.....+|..++.+++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 4677888888755577878888888888888888754677877888888888888887544566666666666666643
No 132
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.84 E-value=4.8e-05 Score=89.27 Aligned_cols=156 Identities=17% Similarity=0.150 Sum_probs=83.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccc---hhhhhhhHHHHH-HHHHHHhhCC
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDD---VKKILRKEYGIA-RAIIEALTYS 171 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~---~~~~F~~~~~i~-~~i~~~l~~~ 171 (767)
-..++||++++.++++.|.... ..-+.++|++|+||||+|+.+++... +...... ..+. -++..-..+.
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~-~~i~~l~l~~l~ag~ 258 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRN-VRLLSLDLGLLQAGA 258 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccC-CeEEEeehhhhhccc
Confidence 3568999999999999987643 23456999999999999999887411 0000000 0000 0000000011
Q ss_pred CCCccchH-HHHHHHHHhc-CCCeEEEEEeCCCCcC-------hhhHHH-HHHhhhcCCCCcEEEEEcCchhHHh-----
Q 035555 172 SSNFVEFQ-SLMQHIQKHV-AGKKLLLVLDDVWNED-------FYKWEQ-FYNCLKTCLHGSKILITTRKETVAR----- 236 (767)
Q Consensus 172 ~~~~~~~~-~~~~~l~~~l-~~k~~LlVlDdv~~~~-------~~~~~~-l~~~l~~~~~gs~ilvTtR~~~v~~----- 236 (767)
....+.+ .+...+...- .+++.+|++|++..-. ..+-.. +...+.. + .-++|-||...+...
T Consensus 259 -~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~-G-~l~~IgaTT~~e~~~~~~~d 335 (852)
T TIGR03345 259 -SVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR-G-ELRTIAATTWAEYKKYFEKD 335 (852)
T ss_pred -ccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-C-CeEEEEecCHHHHhhhhhcc
Confidence 1111222 2222222222 2578999999985321 111112 3333322 2 234555555433221
Q ss_pred --hhcCcceEecCCCChhHHHHHHHHh
Q 035555 237 --IMGSADIISVNVLSETECWLVFESL 261 (767)
Q Consensus 237 --~~~~~~~~~l~~L~~~~~~~l~~~~ 261 (767)
.......+.+++++.+++.+++...
T Consensus 336 ~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 336 PALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred HHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 1123568999999999999997543
No 133
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.84 E-value=0.00025 Score=66.69 Aligned_cols=115 Identities=15% Similarity=0.130 Sum_probs=68.5
Q ss_pred CCcCCCCCCCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHH
Q 035555 87 RVPSISSIDESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIE 166 (767)
Q Consensus 87 ~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~ 166 (767)
+.....|..-.++||-++.++++.....+. +.+-+.|.||+|+||||-+..+++.- ....+.. .++
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~g------nmP~liisGpPG~GKTTsi~~LAr~L-LG~~~ke------~vL- 82 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKEG------NMPNLIISGPPGTGKTTSILCLAREL-LGDSYKE------AVL- 82 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHcC------CCCceEeeCCCCCchhhHHHHHHHHH-hChhhhh------Hhh-
Confidence 344444445568999999999987766433 56778899999999999888777631 1111111 111
Q ss_pred HhhCCCCCccchHHHHHHHHHhcC-------CCeEEEEEeCCCCcChhhHHHHHHhhh
Q 035555 167 ALTYSSSNFVEFQSLMQHIQKHVA-------GKKLLLVLDDVWNEDFYKWEQFYNCLK 217 (767)
Q Consensus 167 ~l~~~~~~~~~~~~~~~~l~~~l~-------~k~~LlVlDdv~~~~~~~~~~l~~~l~ 217 (767)
..+.++....+.+..+++.+-+ ++.-.+|||.+++.....-..++....
T Consensus 83 --ELNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtME 138 (333)
T KOG0991|consen 83 --ELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTME 138 (333)
T ss_pred --hccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHH
Confidence 1222333334444445544332 455689999998765444444444433
No 134
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00029 Score=79.35 Aligned_cols=195 Identities=14% Similarity=0.124 Sum_probs=113.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhh---hh-HHHHHHHHHHHh---
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKIL---RK-EYGIARAIIEAL--- 168 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~-~~~i~~~i~~~l--- 168 (767)
-.+++|.+..++.|...+.... -...+.++|+.|+||||+|+.+.+...-.... .+ .......|...-
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d 89 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVD 89 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCC
Confidence 3579999999999999886532 34567899999999999998887631100000 00 111111111100
Q ss_pred ----hCC-CCCccchHHHHHHHHHh-cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEE-EcCchhHH-hhhcC
Q 035555 169 ----TYS-SSNFVEFQSLMQHIQKH-VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILI-TTRKETVA-RIMGS 240 (767)
Q Consensus 169 ----~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~-~~~~~ 240 (767)
.+. .....+..++...+... ..+++-++|+|++..........+...+..-...+.+|+ ||....+. .....
T Consensus 90 ~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SR 169 (576)
T PRK14965 90 VFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSR 169 (576)
T ss_pred eeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHh
Confidence 000 01111222333322211 124556899999987776777888888876555565554 44444444 23344
Q ss_pred cceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCc-chHHHHHhHH
Q 035555 241 ADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLP-LVAKTIASLL 299 (767)
Q Consensus 241 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~~l 299 (767)
...++..+++.++....+...+-..+.... .+.+..|++.++|.. .|+..+-..+
T Consensus 170 c~~~~f~~l~~~~i~~~L~~i~~~egi~i~----~~al~~la~~a~G~lr~al~~Ldqli 225 (576)
T PRK14965 170 CQRFDFRRIPLQKIVDRLRYIADQEGISIS----DAALALVARKGDGSMRDSLSTLDQVL 225 (576)
T ss_pred hhhhhcCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 678889999999988877765422221111 234677888888865 5555554443
No 135
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.81 E-value=3.3e-05 Score=58.52 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=16.8
Q ss_pred CCcccceeeccCccccccCccCCccccccccCcccceEeeccC
Q 035555 673 AFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGC 715 (767)
Q Consensus 673 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c 715 (767)
++++|++|++++| .++.++ ++.+..+++|++|++++|
T Consensus 23 ~l~~L~~L~l~~N-~l~~i~-----~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 23 NLPNLETLDLSNN-NLTSIP-----PDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TGTTESEEEETSS-SESEEE-----TTTTTTSTTESEEEETSS
T ss_pred CCCCCCEeEccCC-ccCccC-----HHHHcCCCCCCEEeCcCC
Confidence 4455555555544 232222 223445555555555554
No 136
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.80 E-value=0.00026 Score=78.24 Aligned_cols=151 Identities=11% Similarity=0.086 Sum_probs=86.5
Q ss_pred EEEEEccCCChHHHHHHHHHcccch-----hhhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeC
Q 035555 126 VISLVGMGGIGKTTLAQFAYNNDDV-----KKILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDD 200 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~~~~-----~~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDd 200 (767)
.+.|+|..|+|||.|++++++.... +-.|-...++..++...+... ..+.. ++.++. -=+|||||
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~-----~~~~f----~~~y~~-~DLLlIDD 385 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDG-----KGDSF----RRRYRE-MDILLVDD 385 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhc-----cHHHH----HHHhhc-CCEEEEeh
Confidence 4899999999999999999984211 112222444444444443211 11222 222222 24788999
Q ss_pred CCCcCh-hhHH-HHHHhhhcC-CCCcEEEEEcCch---------hHHhhhcCcceEecCCCChhHHHHHHHHhcCCCCCC
Q 035555 201 VWNEDF-YKWE-QFYNCLKTC-LHGSKILITTRKE---------TVARIMGSADIISVNVLSETECWLVFESLGFSGKSM 268 (767)
Q Consensus 201 v~~~~~-~~~~-~l~~~l~~~-~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~ 268 (767)
+..... ..|. .+...+... ..|..|||||+.. .+...+...-.+.+...+.+.-.+++.+++......
T Consensus 386 Iq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~ 465 (617)
T PRK14086 386 IQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLN 465 (617)
T ss_pred hccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 964321 2222 233333322 2355688888752 233444556789999999999999999887443221
Q ss_pred cchhhHHHHHHHHHhhcCCCcc
Q 035555 269 EERENLEKIGREIIRKCKGLPL 290 (767)
Q Consensus 269 ~~~~~~~~~~~~i~~~~~g~PL 290 (767)
. -++++.-|++.+.+..-
T Consensus 466 l----~~eVi~yLa~r~~rnvR 483 (617)
T PRK14086 466 A----PPEVLEFIASRISRNIR 483 (617)
T ss_pred C----CHHHHHHHHHhccCCHH
Confidence 1 13456667666665543
No 137
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.78 E-value=0.00062 Score=74.00 Aligned_cols=155 Identities=12% Similarity=0.105 Sum_probs=86.4
Q ss_pred CEEEEEEccCCChHHHHHHHHHcccchh-----hhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEE
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNNDDVK-----KILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVL 198 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~~~~-----~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVl 198 (767)
...+.|+|..|+|||+||+++++..... -.|-...++...+...+... ..+..... +++ .-+|||
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~-----~~~~~~~~----~~~-~dlLii 205 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNN-----KMEEFKEK----YRS-VDLLLI 205 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcC-----CHHHHHHH----HHh-CCEEEE
Confidence 3468899999999999999998842111 11111334444454444321 12222222 222 348999
Q ss_pred eCCCCcChh-hH-HHHHHhhhcC-CCCcEEEEEcCch--h-------HHhhhcCcceEecCCCChhHHHHHHHHhcCCCC
Q 035555 199 DDVWNEDFY-KW-EQFYNCLKTC-LHGSKILITTRKE--T-------VARIMGSADIISVNVLSETECWLVFESLGFSGK 266 (767)
Q Consensus 199 Ddv~~~~~~-~~-~~l~~~l~~~-~~gs~ilvTtR~~--~-------v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~ 266 (767)
||+...... .+ +.+...+... ..|..+|+|+... . +...+.....+.+++.+.++-.+++.+.+....
T Consensus 206 DDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~ 285 (405)
T TIGR00362 206 DDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEG 285 (405)
T ss_pred ehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 999642211 11 2233333221 2345688887642 1 122223345789999999999999998864332
Q ss_pred CCcchhhHHHHHHHHHhhcCCCcchH
Q 035555 267 SMEERENLEKIGREIIRKCKGLPLVA 292 (767)
Q Consensus 267 ~~~~~~~~~~~~~~i~~~~~g~PLai 292 (767)
..- -+++...|++.+.|..-.+
T Consensus 286 ~~l----~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 286 LEL----PDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred CCC----CHHHHHHHHHhcCCCHHHH
Confidence 211 1355677777777766543
No 138
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.00053 Score=76.89 Aligned_cols=187 Identities=16% Similarity=0.114 Sum_probs=108.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchh---hhhhh-HHHHHHHHHHHhhC-
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVK---KILRK-EYGIARAIIEALTY- 170 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~-~~~i~~~i~~~l~~- 170 (767)
-.+++|.+..++.+..++.... -.+.+.++|+.|+||||+|+.+.+...-. ..-.+ .....+.|......
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~d 89 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMD 89 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCC
Confidence 3579999999999999987542 34667789999999999998886531000 00000 11112222111000
Q ss_pred ------CC-CCccchHHHHHHHHHh-cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEE-EcCchhHH-hhhcC
Q 035555 171 ------SS-SNFVEFQSLMQHIQKH-VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILI-TTRKETVA-RIMGS 240 (767)
Q Consensus 171 ------~~-~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~-~~~~~ 240 (767)
.. ....+..++...+... ..++.-++|+|++.......+..+...+........+|+ ||....+. .....
T Consensus 90 v~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SR 169 (559)
T PRK05563 90 VIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSR 169 (559)
T ss_pred eEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhH
Confidence 00 0011122222222211 135667889999987766777788877766444444454 44443332 23344
Q ss_pred cceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcch
Q 035555 241 ADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLV 291 (767)
Q Consensus 241 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 291 (767)
...++..+++.++....+...+-..+.... .+.+..|++.++|.+..
T Consensus 170 c~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 170 CQRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMRD 216 (559)
T ss_pred heEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 668889999999988888776532221111 23466788888886643
No 139
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.76 E-value=0.00064 Score=74.85 Aligned_cols=153 Identities=12% Similarity=0.098 Sum_probs=88.5
Q ss_pred CEEEEEEccCCChHHHHHHHHHcccchhhh-------hhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEE
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNNDDVKKI-------LRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLL 196 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~-------F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~Ll 196 (767)
...+.|+|.+|+|||+||+++.+. .... |-...++...+...+... ..+.. .+.++ +.-+|
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~~~~~~~~~~~~~~-----~~~~~----~~~~~-~~dlL 215 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSEKFTNDFVNALRNN-----TMEEF----KEKYR-SVDVL 215 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHHHHHHHHHHHHHcC-----cHHHH----HHHHh-cCCEE
Confidence 356899999999999999999884 3222 212334444444444321 11222 22333 24489
Q ss_pred EEeCCCCcCh-h-hHHHHHHhhhcC-CCCcEEEEEcCch--h-------HHhhhcCcceEecCCCChhHHHHHHHHhcCC
Q 035555 197 VLDDVWNEDF-Y-KWEQFYNCLKTC-LHGSKILITTRKE--T-------VARIMGSADIISVNVLSETECWLVFESLGFS 264 (767)
Q Consensus 197 VlDdv~~~~~-~-~~~~l~~~l~~~-~~gs~ilvTtR~~--~-------v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~ 264 (767)
||||+..... . ..+.+...+... ..|..|++||... . +...+.....+++++.+.++-.+++.+.+-.
T Consensus 216 iiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 216 LIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred EEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 9999954211 1 112233322211 2344588887652 1 1223344568999999999999999988743
Q ss_pred CCCCcchhhHHHHHHHHHhhcCCCcchH
Q 035555 265 GKSMEERENLEKIGREIIRKCKGLPLVA 292 (767)
Q Consensus 265 ~~~~~~~~~~~~~~~~i~~~~~g~PLai 292 (767)
... . --+++...|++.+.|..-.+
T Consensus 296 ~~~-~---l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 296 EGI-D---LPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred cCC-C---CCHHHHHHHHcCcCCCHHHH
Confidence 221 1 12345777888888876644
No 140
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.76 E-value=0.00048 Score=70.47 Aligned_cols=128 Identities=15% Similarity=0.115 Sum_probs=69.6
Q ss_pred EEEEEEccCCChHHHHHHHHHcccc----h-hhhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEe
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNNDD----V-KKILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLD 199 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~~~----~-~~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlD 199 (767)
.-|.++|++|+|||++|+.+++... . ...|-... ..++...+.+.. .......+.+. ..-+|+||
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~--~~~l~~~~~g~~-----~~~~~~~~~~a---~~gvL~iD 128 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT--RDDLVGQYIGHT-----APKTKEILKRA---MGGVLFID 128 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec--HHHHhHhhcccc-----hHHHHHHHHHc---cCcEEEEe
Confidence 3688999999999999977755211 0 01121100 011222111111 11222223332 23588999
Q ss_pred CCCCc---------ChhhHHHHHHhhhcCCCCcEEEEEcCchhHHhhhc--------CcceEecCCCChhHHHHHHHHhc
Q 035555 200 DVWNE---------DFYKWEQFYNCLKTCLHGSKILITTRKETVARIMG--------SADIISVNVLSETECWLVFESLG 262 (767)
Q Consensus 200 dv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~--------~~~~~~l~~L~~~~~~~l~~~~~ 262 (767)
++..- ....+..+...+.....+.+||+++.......... ....+.+++++.+|..+++...+
T Consensus 129 Ei~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l 208 (284)
T TIGR02880 129 EAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLML 208 (284)
T ss_pred chhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHH
Confidence 99521 12234456666655555667777765443322211 13578999999999999988775
No 141
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.76 E-value=1e-05 Score=88.13 Aligned_cols=189 Identities=25% Similarity=0.232 Sum_probs=108.7
Q ss_pred cCceeeeeccC--CCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEee
Q 035555 443 LIKCRRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLD 520 (767)
Q Consensus 443 ~~~~L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~ 520 (767)
.++.|..+++. .+..+...+..|++|++|++++|. |+.+.. +..+..|+.|++++|. +..++ .+..+++|+.++
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGNL-ISDIS-GLESLKSLKLLD 168 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-hhhccchhhheeccCc-chhcc-CCccchhhhccc
Confidence 45667777766 455555557788888888888888 777654 6677778888888887 65554 455688888888
Q ss_pred CCCCCCccccccc-CcCCcCCcccceeEecCccCCCCChhhhhcCC--CCCCeeeeCCCCCCChhhhHHhhccCCC--Cc
Q 035555 521 NDYTNSLRYLPVG-IRELIRLRRVRKFVVGGGYDRACSLESLKRLI--LLRECRIHGLGDVSDVGEARRAELEKKK--NL 595 (767)
Q Consensus 521 l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~--~L~~L~i~~l~~~~~~~~~~~~~l~~~~--~L 595 (767)
+++| .+..+... ...+.+++.+.+..+.... ......+..+. .+....+..+.. +.... +|
T Consensus 169 l~~n-~i~~ie~~~~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~-----------l~~~~~~~L 234 (414)
T KOG0531|consen 169 LSYN-RIVDIENDELSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEG-----------LNELVMLHL 234 (414)
T ss_pred CCcc-hhhhhhhhhhhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceeccC-----------cccchhHHH
Confidence 8888 44444332 3555566655544333322 11111111111 112122222111 11111 37
Q ss_pred CceEEEecCCccCCccccCCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCC
Q 035555 596 FDLELRFDCNVIPKNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMH 650 (767)
Q Consensus 596 ~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 650 (767)
+.++++.|.....+..+..+.++..|++.++ ....+..+...+.+..+....+.
T Consensus 235 ~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n-~~~~~~~~~~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 235 RELYLSGNRISRSPEGLENLKNLPVLDLSSN-RISNLEGLERLPKLSELWLNDNK 288 (414)
T ss_pred HHHhcccCccccccccccccccccccchhhc-cccccccccccchHHHhccCcch
Confidence 7888888877666555566777888887765 33333334445555555555444
No 142
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.75 E-value=0.0009 Score=72.91 Aligned_cols=155 Identities=12% Similarity=0.068 Sum_probs=87.1
Q ss_pred EEEEEEccCCChHHHHHHHHHcccch-----hhhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEe
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNNDDV-----KKILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLD 199 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~~~~-----~~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlD 199 (767)
..+.|+|.+|+|||+||+++++.... +-.|-...++...+...+... ..++ +.+.++.+.-+|++|
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~-----~~~~----f~~~~~~~~dvLlID 201 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEG-----KLNE----FREKYRKKVDVLLID 201 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcc-----cHHH----HHHHHHhcCCEEEEe
Confidence 35999999999999999999984211 111212344455555544321 1122 222233345589999
Q ss_pred CCCCcC-hhhH-HHHHHhhhcC-CCCcEEEEEcCc-hh--------HHhhhcCcceEecCCCChhHHHHHHHHhcCCCCC
Q 035555 200 DVWNED-FYKW-EQFYNCLKTC-LHGSKILITTRK-ET--------VARIMGSADIISVNVLSETECWLVFESLGFSGKS 267 (767)
Q Consensus 200 dv~~~~-~~~~-~~l~~~l~~~-~~gs~ilvTtR~-~~--------v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~ 267 (767)
|+.... ...+ ..+...+... ..|..||+||.. .. +...+.....+++++.+.++-.+++.+.+.....
T Consensus 202 Di~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~ 281 (440)
T PRK14088 202 DVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHG 281 (440)
T ss_pred chhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCC
Confidence 996321 1111 2233332211 234568888853 21 1122333558899999999999999888643221
Q ss_pred CcchhhHHHHHHHHHhhcCCCcchH
Q 035555 268 MEERENLEKIGREIIRKCKGLPLVA 292 (767)
Q Consensus 268 ~~~~~~~~~~~~~i~~~~~g~PLai 292 (767)
.. -.++...|++.+.|.--.+
T Consensus 282 -~l---~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 282 -EL---PEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred -CC---CHHHHHHHHhccccCHHHH
Confidence 11 1345777888877765444
No 143
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.75 E-value=3.7e-05 Score=53.38 Aligned_cols=40 Identities=35% Similarity=0.495 Sum_probs=27.0
Q ss_pred CcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccC
Q 035555 466 IHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLP 507 (767)
Q Consensus 466 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp 507 (767)
++|++|++++|. ++.+|..+++|++|++|++++|. +..+|
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 367777777777 77777767777777777777776 54443
No 144
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.74 E-value=0.00048 Score=68.95 Aligned_cols=190 Identities=16% Similarity=0.104 Sum_probs=113.1
Q ss_pred Cccccc---hhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccch-----hhhhhh----------HH
Q 035555 97 SEIFGR---EKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDV-----KKILRK----------EY 158 (767)
Q Consensus 97 ~~~vGr---~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~-----~~~F~~----------~~ 158 (767)
+.+||- .+.++++.+++..+. ....+.+.|||.+|.|||++++.+.+..-. ...+.. ..
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 345554 345677777776553 346678999999999999999999864211 111221 88
Q ss_pred HHHHHHHHHhhCCCCCccchHHHHHHHHHhcCC-CeEEEEEeCCCCc------ChhhHHHHHHhhhcCCCCcEEEEEcCc
Q 035555 159 GIARAIIEALTYSSSNFVEFQSLMQHIQKHVAG-KKLLLVLDDVWNE------DFYKWEQFYNCLKTCLHGSKILITTRK 231 (767)
Q Consensus 159 ~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~------~~~~~~~l~~~l~~~~~gs~ilvTtR~ 231 (767)
.+...|+..++.+.................++. +--+||+|.+.+. +....-.....+.+.-.-+-|.+-|++
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 899999999998766655555555555555543 4458999999542 111222233334333444566776664
Q ss_pred hhHHh-----hhcCcceEecCCCChhHH-HHHHHHh--cCCCCCCcchhhHHHHHHHHHhhcCCCcc
Q 035555 232 ETVAR-----IMGSADIISVNVLSETEC-WLVFESL--GFSGKSMEERENLEKIGREIIRKCKGLPL 290 (767)
Q Consensus 232 ~~v~~-----~~~~~~~~~l~~L~~~~~-~~l~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 290 (767)
---+- ..+-...+.++....++- ..|+... .+.-..+. .-...+++..|...++|+.=
T Consensus 191 A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S-~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 191 AYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPS-NLASPELARRIHERSEGLIG 256 (302)
T ss_pred HHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHHHcCCchH
Confidence 22111 112245777777765543 4444332 12222211 22346788999999999763
No 145
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.73 E-value=9.3e-05 Score=77.52 Aligned_cols=65 Identities=26% Similarity=0.255 Sum_probs=45.8
Q ss_pred ccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCccccccc
Q 035555 463 EKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPVG 533 (767)
Q Consensus 463 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~ 533 (767)
..+.++++|++++|. ++.+|. --.+|+.|.+++|..+..+|..+ .++|++|++++|..+..+|..
T Consensus 49 ~~~~~l~~L~Is~c~-L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 49 EEARASGRLYIKDCD-IESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHhcCCCEEEeCCCC-CcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc
Confidence 345778888888885 777772 12368888888888777777654 357888888887666666654
No 146
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.71 E-value=0.0001 Score=84.76 Aligned_cols=153 Identities=18% Similarity=0.206 Sum_probs=83.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccc---hhhhhhh----HHHHHHHHHHHhh
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDD---VKKILRK----EYGIARAIIEALT 169 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~---~~~~F~~----~~~i~~~i~~~l~ 169 (767)
..++||++++.++++.|.... ..-+.++|++|+|||++|+.++.... +...+.. ...+ ..+ +.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~-~~l---la 255 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI-GSL---LA 255 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH-HHH---hc
Confidence 358999999999999997642 22356899999999999999886310 0000100 0000 011 11
Q ss_pred CCCCCccchHHHHHHHHHhc-CCCeEEEEEeCCCCc--------ChhhHHHHHHhhhcCCCCcEEEEEcCchhHHhh---
Q 035555 170 YSSSNFVEFQSLMQHIQKHV-AGKKLLLVLDDVWNE--------DFYKWEQFYNCLKTCLHGSKILITTRKETVARI--- 237 (767)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~--- 237 (767)
+.. ...+.+.....+.+.+ +.++.+|++|++..- ...+...+..++-..+ .-++|-+|...++...
T Consensus 256 G~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E~~~~~~~ 333 (758)
T PRK11034 256 GTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQEFSNIFEK 333 (758)
T ss_pred ccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHHHHHHhhc
Confidence 111 0112222222222222 346789999999521 1122333333333322 2344545544433211
Q ss_pred ----hcCcceEecCCCChhHHHHHHHHh
Q 035555 238 ----MGSADIISVNVLSETECWLVFESL 261 (767)
Q Consensus 238 ----~~~~~~~~l~~L~~~~~~~l~~~~ 261 (767)
......+.+++.+.+++.+++...
T Consensus 334 D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 334 DRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 122468999999999999998854
No 147
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.71 E-value=0.00057 Score=76.73 Aligned_cols=60 Identities=18% Similarity=0.210 Sum_probs=45.8
Q ss_pred CCcCCCCCCCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 87 RVPSISSIDESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 87 ~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
+.....|....+++|.++.++++..++..... .....+++.|+|++|+||||+++.++..
T Consensus 74 W~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 74 WVEKYKPETQHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred hHHHhCCCCHHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 33344455567899999999999999875432 1224468999999999999999999874
No 148
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.69 E-value=0.0033 Score=63.98 Aligned_cols=164 Identities=15% Similarity=0.172 Sum_probs=95.6
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhh------HHHHHHHHHHHh
Q 035555 95 DESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK------EYGIARAIIEAL 168 (767)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~------~~~i~~~i~~~l 168 (767)
..+.|.+|+.++..+..++..... .-+.+|.|+|-+|.|||.+.+++.+.......|-. ...++..|+...
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHh
Confidence 356789999999999988865431 24567799999999999999999997644433322 566777888877
Q ss_pred h-CCCCCc------cchHHHHHHHHH--hcC--CCeEEEEEeCCCCc---ChhhHHHHHHhhhcCCCCcEEEEEcCchhH
Q 035555 169 T-YSSSNF------VEFQSLMQHIQK--HVA--GKKLLLVLDDVWNE---DFYKWEQFYNCLKTCLHGSKILITTRKETV 234 (767)
Q Consensus 169 ~-~~~~~~------~~~~~~~~~l~~--~l~--~k~~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v 234 (767)
. .+.+.. ....+....+.+ ... ++.++||||+++.- +..-...+...-.--....-+|+++-..-.
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e 160 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCE 160 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccH
Confidence 4 222211 122233334443 222 46899999999532 111111111111111122334444443222
Q ss_pred Hhh---hcC--cceEecCCCChhHHHHHHHHh
Q 035555 235 ARI---MGS--ADIISVNVLSETECWLVFESL 261 (767)
Q Consensus 235 ~~~---~~~--~~~~~l~~L~~~~~~~l~~~~ 261 (767)
... ++. ..++..+.-+.+|...++.+.
T Consensus 161 ~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 161 KQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred HHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 221 333 235556778889998888764
No 149
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.68 E-value=0.0007 Score=73.57 Aligned_cols=150 Identities=17% Similarity=0.121 Sum_probs=81.4
Q ss_pred CEEEEEEccCCChHHHHHHHHHcccch---hhhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeC
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNNDDV---KKILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDD 200 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~~~---~~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDd 200 (767)
...+.|+|+.|+|||+||+++++.... +-.|-....+...+...+... .. ..++..++ ..-+|++||
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~-----~~----~~f~~~~~-~~dvLiIDD 210 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSG-----EM----QRFRQFYR-NVDALFIED 210 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcc-----hH----HHHHHHcc-cCCEEEEcc
Confidence 356889999999999999999984211 111111333444444444321 11 12333333 344888999
Q ss_pred CCCcChhh--HHHHHHhhhcC-CCCcEEEEEcCch---------hHHhhhcCcceEecCCCChhHHHHHHHHhcCCCCCC
Q 035555 201 VWNEDFYK--WEQFYNCLKTC-LHGSKILITTRKE---------TVARIMGSADIISVNVLSETECWLVFESLGFSGKSM 268 (767)
Q Consensus 201 v~~~~~~~--~~~l~~~l~~~-~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~ 268 (767)
+....... .+.+...+... ..|..||+||... .+...+.....+++.+++.++..+++.+++-....
T Consensus 211 iq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~- 289 (445)
T PRK12422 211 IEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSI- 289 (445)
T ss_pred hhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCC-
Confidence 85432111 12233333211 2355688888642 22223344568899999999999999887643221
Q ss_pred cchhhHHHHHHHHHhhcCC
Q 035555 269 EERENLEKIGREIIRKCKG 287 (767)
Q Consensus 269 ~~~~~~~~~~~~i~~~~~g 287 (767)
..+ .++..-|++.+.+
T Consensus 290 ~l~---~evl~~la~~~~~ 305 (445)
T PRK12422 290 RIE---ETALDFLIEALSS 305 (445)
T ss_pred CCC---HHHHHHHHHhcCC
Confidence 111 2334445555553
No 150
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.68 E-value=0.001 Score=68.92 Aligned_cols=184 Identities=15% Similarity=0.157 Sum_probs=110.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchh--------hhh-----hhHH-----
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVK--------KIL-----RKEY----- 158 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~--------~~F-----~~~~----- 158 (767)
.+++|.++.++.+.+.+.... -.....++|+.|+||+++|..+.+..--. .++ .+..
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 368999999999999986542 34789999999999999997775521000 000 0000
Q ss_pred ------HHHHHHHHHhh--CCCCCccchHHHHHHHHHhc-----CCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEE
Q 035555 159 ------GIARAIIEALT--YSSSNFVEFQSLMQHIQKHV-----AGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKI 225 (767)
Q Consensus 159 ------~i~~~i~~~l~--~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 225 (767)
.+....++..+ .........++ ++.+.+.+ .+++-++|+|++...+......++..+..-. .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 00000001000 00001111222 22333333 3567789999998877778888888887655 4445
Q ss_pred EEEc-CchhH-HhhhcCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHH
Q 035555 226 LITT-RKETV-ARIMGSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKT 294 (767)
Q Consensus 226 lvTt-R~~~v-~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 294 (767)
|++| +.+.+ .+..+.+..+++.+++.++..+.+.+...... .......++..++|.|..+..
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-------chhHHHHHHHHcCCCHHHHHH
Confidence 5444 43333 33445578999999999999999987642111 011135788899999965544
No 151
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.66 E-value=0.00054 Score=73.19 Aligned_cols=156 Identities=14% Similarity=0.141 Sum_probs=84.3
Q ss_pred ccccchhHHHHHHHHHhcCCC-------CCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhC
Q 035555 98 EIFGREKEKSELVNRLLCESS-------KEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTY 170 (767)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~ 170 (767)
++.|.+..+++|.+.+.-+-. -+-...+-|.++|++|+|||++|+++++.. ...|-... ...+.....+
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l--~~~fi~i~--~s~l~~k~~g 221 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT--TATFIRVV--GSEFVQKYLG 221 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCEEEEe--hHHHHHHhcc
Confidence 478888888888776642110 011345779999999999999999999842 22221100 0011111000
Q ss_pred CCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCc-----------Chh---hHHHHHHhhhc--CCCCcEEEEEcCchhH
Q 035555 171 SSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE-----------DFY---KWEQFYNCLKT--CLHGSKILITTRKETV 234 (767)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~---~~~~l~~~l~~--~~~gs~ilvTtR~~~v 234 (767)
.....+.+.+.......+.+|++|+++.. +.. .+..+...+.. ...+..||.||...+.
T Consensus 222 -----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 222 -----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 296 (398)
T ss_pred -----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh
Confidence 01112222233333467899999997421 011 11122222221 1235567777775432
Q ss_pred H-hh-h---cCcceEecCCCChhHHHHHHHHhc
Q 035555 235 A-RI-M---GSADIISVNVLSETECWLVFESLG 262 (767)
Q Consensus 235 ~-~~-~---~~~~~~~l~~L~~~~~~~l~~~~~ 262 (767)
. .. . .-...+.++..+.++..++|....
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 2 11 1 124568888888888888887654
No 152
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.66 E-value=9.6e-06 Score=88.38 Aligned_cols=89 Identities=27% Similarity=0.383 Sum_probs=59.7
Q ss_pred CcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCcccccccC
Q 035555 455 IKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPVGI 534 (767)
Q Consensus 455 ~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~ 534 (767)
+..+-..++.+..|.+|++.+|. +..+...+..+++|++|++++|. +..+. .+..++.|+.|++.+| .+..+. ++
T Consensus 84 i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l~~l~~L~~L~l~~N-~i~~~~-~~ 158 (414)
T KOG0531|consen 84 IAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNK-ITKLE-GLSTLTLLKELNLSGN-LISDIS-GL 158 (414)
T ss_pred hhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheeccccc-ccccc-chhhccchhhheeccC-cchhcc-CC
Confidence 33444557778888888888888 77776657778888888888887 55553 4666777888888887 444442 34
Q ss_pred cCCcCCcccceeEe
Q 035555 535 RELIRLRRVRKFVV 548 (767)
Q Consensus 535 ~~l~~L~~L~~~~~ 548 (767)
..+.+|+.+.+..+
T Consensus 159 ~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 159 ESLKSLKLLDLSYN 172 (414)
T ss_pred ccchhhhcccCCcc
Confidence 44555555544433
No 153
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.65 E-value=0.0028 Score=66.74 Aligned_cols=131 Identities=15% Similarity=0.176 Sum_probs=78.4
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcccchhhhhh-------hHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEE
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNNDDVKKILR-------KEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLL 195 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~-------~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~L 195 (767)
....+.|||..|.|||.|++++.+. ...... ........++..+.. .-....++.. .-=+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~se~f~~~~v~a~~~---------~~~~~Fk~~y--~~dl 178 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLTSEDFTNDFVKALRD---------NEMEKFKEKY--SLDL 178 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEeccHHHHHHHHHHHHHh---------hhHHHHHHhh--ccCe
Confidence 4668999999999999999999884 222222 133333333333321 1122233333 2348
Q ss_pred EEEeCCCCcC-hhhHH-HHHHhhhcC-CCCcEEEEEcCc---------hhHHhhhcCcceEecCCCChhHHHHHHHHhcC
Q 035555 196 LVLDDVWNED-FYKWE-QFYNCLKTC-LHGSKILITTRK---------ETVARIMGSADIISVNVLSETECWLVFESLGF 263 (767)
Q Consensus 196 lVlDdv~~~~-~~~~~-~l~~~l~~~-~~gs~ilvTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~ 263 (767)
+++||++--. ...|. .+...+..- ..|-.||+|++. +.+...+...-.+++.+.+.+...+++.+++.
T Consensus 179 llIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 179 LLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred eeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 8999996411 11222 222223221 234479999975 34445556678999999999999999998764
Q ss_pred CCC
Q 035555 264 SGK 266 (767)
Q Consensus 264 ~~~ 266 (767)
...
T Consensus 259 ~~~ 261 (408)
T COG0593 259 DRG 261 (408)
T ss_pred hcC
Confidence 433
No 154
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.63 E-value=8.5e-05 Score=66.65 Aligned_cols=94 Identities=23% Similarity=0.112 Sum_probs=50.8
Q ss_pred EEEEccCCChHHHHHHHHHcccchhhhhhh--HHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCC-CeEEEEEeCCCC
Q 035555 127 ISLVGMGGIGKTTLAQFAYNNDDVKKILRK--EYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAG-KKLLLVLDDVWN 203 (767)
Q Consensus 127 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~ 203 (767)
|.|+|++|+|||++|+.++++.. .+|-. ... +. ..........+...+.+.-.. ++.+|++||++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~--~~~~~i~~~~--------~~-~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~ 69 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG--FPFIEIDGSE--------LI-SSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDK 69 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT--SEEEEEETTH--------HH-TSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGG
T ss_pred CEEECcCCCCeeHHHHHHHhhcc--cccccccccc--------cc-cccccccccccccccccccccccceeeeeccchh
Confidence 57999999999999999998532 21110 000 00 011112222333333333223 489999999954
Q ss_pred cChhh-----------HHHHHHhhhcCCC---CcEEEEEcCc
Q 035555 204 EDFYK-----------WEQFYNCLKTCLH---GSKILITTRK 231 (767)
Q Consensus 204 ~~~~~-----------~~~l~~~l~~~~~---gs~ilvTtR~ 231 (767)
-.... ...+...+..... +..||.||..
T Consensus 70 l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 70 LFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp TSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred cccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 33222 4455555554432 3566667765
No 155
>PRK10536 hypothetical protein; Provisional
Probab=97.63 E-value=0.00088 Score=65.74 Aligned_cols=42 Identities=21% Similarity=0.308 Sum_probs=34.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHc
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
..+.+|......+..++.+. .+|.+.|++|.|||+||.++..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~ 96 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAA 96 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHH
Confidence 45678888999999888532 3899999999999999988655
No 156
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.61 E-value=0.00035 Score=82.76 Aligned_cols=157 Identities=12% Similarity=0.102 Sum_probs=80.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhH--HHH-HHHHHHHhhCCCC
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKE--YGI-ARAIIEALTYSSS 173 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~--~~i-~~~i~~~l~~~~~ 173 (767)
..++||++++.++++.|.... ...+.++|++|+|||++|+.+.....-....... ..+ .-++...+.+...
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~ 246 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKY 246 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchh
Confidence 458999999999999997642 2345689999999999999887741100000000 000 0000000011111
Q ss_pred CccchHHHHHHHHHhc-C-CCeEEEEEeCCCCcC-------hhhHHHHHHhhhcCCCCcEEEEEcCchhHHhh-------
Q 035555 174 NFVEFQSLMQHIQKHV-A-GKKLLLVLDDVWNED-------FYKWEQFYNCLKTCLHGSKILITTRKETVARI------- 237 (767)
Q Consensus 174 ~~~~~~~~~~~l~~~l-~-~k~~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~------- 237 (767)
. .+.+.....+...+ + +++.+|++|++..-. ..+...+..+.-..+. -++|-+|...+....
T Consensus 247 ~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~-i~~IgaTt~~e~r~~~~~d~al 324 (852)
T TIGR03346 247 R-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGE-LHCIGATTLDEYRKYIEKDAAL 324 (852)
T ss_pred h-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCc-eEEEEeCcHHHHHHHhhcCHHH
Confidence 1 12222222222222 2 468999999995321 0111122222212222 345545554433221
Q ss_pred hcCcceEecCCCChhHHHHHHHHh
Q 035555 238 MGSADIISVNVLSETECWLVFESL 261 (767)
Q Consensus 238 ~~~~~~~~l~~L~~~~~~~l~~~~ 261 (767)
......+.++..+.++...++...
T Consensus 325 ~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 325 ERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HhcCCEEEeCCCCHHHHHHHHHHH
Confidence 122456889999999999988754
No 157
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.0013 Score=68.38 Aligned_cols=161 Identities=14% Similarity=0.126 Sum_probs=96.5
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcccchhhhh---hh-HHHHHHHHHHHhhCCCC-----------CccchHHHHHHHHH
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNNDDVKKIL---RK-EYGIARAIIEALTYSSS-----------NFVEFQSLMQHIQK 187 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~-~~~i~~~i~~~l~~~~~-----------~~~~~~~~~~~l~~ 187 (767)
-..-+.++|+.|+||||+|+.+.+..-=...- .+ ...-.+.+.. +..+ .....+++.+ +.+
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~---g~HPD~~~i~~~~~~~~i~id~iR~-l~~ 96 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRA---GSHPDNFVLEPEEADKTIKVDQVRE-LVS 96 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhc---CCCCCEEEEeccCCCCCCCHHHHHH-HHH
Confidence 45678899999999999998886531100000 00 1111111111 1111 1112233332 222
Q ss_pred hc-----CCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCch-hHH-hhhcCcceEecCCCChhHHHHHHHH
Q 035555 188 HV-----AGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKE-TVA-RIMGSADIISVNVLSETECWLVFES 260 (767)
Q Consensus 188 ~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~-~~~~~~~~~~l~~L~~~~~~~l~~~ 260 (767)
.+ .+++-++|+|++...+......+...+..-..++.+|+||.+. .+. +..+....+.+.+++.+++.+.+..
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~ 176 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQ 176 (328)
T ss_pred HHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHH
Confidence 22 2444556789999888888888998888766677777777764 332 3445577899999999999998876
Q ss_pred hcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHH
Q 035555 261 LGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTI 295 (767)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 295 (767)
.... . . .+.+..++..++|.|..+..+
T Consensus 177 ~~~~-~---~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 177 ALPE-S---D----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred hccc-C---C----hHHHHHHHHHcCCCHHHHHHH
Confidence 5311 1 1 122556788999999755443
No 158
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=1.1e-05 Score=78.27 Aligned_cols=84 Identities=18% Similarity=0.154 Sum_probs=49.2
Q ss_pred CCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCc
Q 035555 637 KLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCF 716 (767)
Q Consensus 637 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 716 (767)
-+|++..+.+..|+ ++....+-. ...+|.+.-|.|+.+ ++.+|..- +++..||+|.-|.++++|
T Consensus 197 ~Fpnv~sv~v~e~P-lK~~s~ek~----------se~~p~~~~LnL~~~-~idswasv----D~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGP-LKTESSEKG----------SEPFPSLSCLNLGAN-NIDSWASV----DALNGFPQLVDLRVSENP 260 (418)
T ss_pred hcccchheeeecCc-ccchhhccc----------CCCCCcchhhhhccc-ccccHHHH----HHHcCCchhheeeccCCc
Confidence 36777777777776 433322111 125666767777665 56666531 135578888888888887
Q ss_pred cccCCCc------CCCCCCCCcEEEe
Q 035555 717 KLKALPD------LLLQKTTLQKLHI 736 (767)
Q Consensus 717 ~l~~lp~------~~~~l~sL~~L~l 736 (767)
....+-. .+..++.++.|+=
T Consensus 261 l~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 261 LSDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred ccccccCCcceEEEEeeccceEEecC
Confidence 6654432 2344566666653
No 159
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.0023 Score=65.96 Aligned_cols=173 Identities=13% Similarity=0.128 Sum_probs=102.9
Q ss_pred hHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhh-HHHHHHHHHHHhhCCCCC--------
Q 035555 104 KEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK-EYGIARAIIEALTYSSSN-------- 174 (767)
Q Consensus 104 ~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~~i~~~i~~~l~~~~~~-------- 174 (767)
...+++.+.+..+. -...+.++|+.|+||+++|..+.+..--.....+ ...-.+.+. .+..++
T Consensus 11 ~~~~~l~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~---~g~HPD~~~i~~~p 82 (319)
T PRK08769 11 RAYDQTVAALDAGR-----LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIA---AGTHPDLQLVSFIP 82 (319)
T ss_pred HHHHHHHHHHHcCC-----cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHh---cCCCCCEEEEecCC
Confidence 34566666665432 3456889999999999999887653100000000 000011111 011100
Q ss_pred ---------ccchHHHHHHHHHhc-----CCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCc-hhH-Hhhh
Q 035555 175 ---------FVEFQSLMQHIQKHV-----AGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRK-ETV-ARIM 238 (767)
Q Consensus 175 ---------~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v-~~~~ 238 (767)
....+++ +.+.+.+ .+++-++|+|++...+...-..++..+..-..++.+|++|.+ ..+ .+..
T Consensus 83 ~~~~~k~~~~I~idqI-R~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIr 161 (319)
T PRK08769 83 NRTGDKLRTEIVIEQV-REISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIR 161 (319)
T ss_pred CcccccccccccHHHH-HHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHH
Confidence 0112222 2222222 256679999999887777777888888877677777777765 333 3444
Q ss_pred cCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHH
Q 035555 239 GSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTI 295 (767)
Q Consensus 239 ~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 295 (767)
+....+.+.+++.+++.+.+.... .. ...+..++..++|.|+.+..+
T Consensus 162 SRCq~i~~~~~~~~~~~~~L~~~~------~~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 162 SRCQRLEFKLPPAHEALAWLLAQG------VS----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred hhheEeeCCCcCHHHHHHHHHHcC------CC----hHHHHHHHHHcCCCHHHHHHH
Confidence 557889999999999998887542 11 112567899999999866544
No 160
>PRK08116 hypothetical protein; Validated
Probab=97.52 E-value=0.0005 Score=69.56 Aligned_cols=100 Identities=25% Similarity=0.280 Sum_probs=57.0
Q ss_pred EEEEEEccCCChHHHHHHHHHcccc---hhhhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCC
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNNDD---VKKILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDV 201 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~~~---~~~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv 201 (767)
..+.++|..|+|||.||.++++... ....|-...+++..+........ .....+.. +.+.+-. ||||||+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~--~~~~~~~~----~~l~~~d-lLviDDl 187 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSG--KEDENEII----RSLVNAD-LLILDDL 187 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccc--cccHHHHH----HHhcCCC-EEEEecc
Confidence 4588999999999999999998521 11122234555555554433211 11122222 2233333 8999999
Q ss_pred CCcChhhHHH--HHHhhhcC-CCCcEEEEEcCc
Q 035555 202 WNEDFYKWEQ--FYNCLKTC-LHGSKILITTRK 231 (767)
Q Consensus 202 ~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 231 (767)
.......|.. +...+... ..|..+||||..
T Consensus 188 g~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 188 GAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 5443344544 44444422 345679999974
No 161
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.52 E-value=0.0023 Score=61.46 Aligned_cols=158 Identities=15% Similarity=0.140 Sum_probs=89.3
Q ss_pred CCCccccchhHHHH---HHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCC
Q 035555 95 DESEIFGREKEKSE---LVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYS 171 (767)
Q Consensus 95 ~~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~ 171 (767)
.-.++||.++...+ |.+.|.++..-++..++-|..+|++|.|||.+|+++.+...+. |-. ....+-|-+.++
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~l~-vkat~liGehVG-- 193 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--LLL-VKATELIGEHVG-- 193 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--eEE-echHHHHHHHhh--
Confidence 34568999876554 7778877655567788999999999999999999999953321 111 011111222211
Q ss_pred CCCccchHHHHHHHHH-hcCCCeEEEEEeCCCCc-----------C-hhhHHHHHHhhhc--CCCCcEEEEEcCchhHHh
Q 035555 172 SSNFVEFQSLMQHIQK-HVAGKKLLLVLDDVWNE-----------D-FYKWEQFYNCLKT--CLHGSKILITTRKETVAR 236 (767)
Q Consensus 172 ~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~-----------~-~~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~~ 236 (767)
+.......+.+ .-+.-++.+++|.++-- + .+....++..+.. .+.|-..|-.|.+.+...
T Consensus 194 -----dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD 268 (368)
T COG1223 194 -----DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLD 268 (368)
T ss_pred -----hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcC
Confidence 11222222222 22346889999987310 1 1222334444432 245655566666544432
Q ss_pred hh-c--CcceEecCCCChhHHHHHHHHhc
Q 035555 237 IM-G--SADIISVNVLSETECWLVFESLG 262 (767)
Q Consensus 237 ~~-~--~~~~~~l~~L~~~~~~~l~~~~~ 262 (767)
.. . -...|+..--+.+|-.+++..++
T Consensus 269 ~aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 269 PAIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred HHHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 21 1 13455555557788888887776
No 162
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.52 E-value=0.00037 Score=73.95 Aligned_cols=43 Identities=28% Similarity=0.306 Sum_probs=36.5
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.++++.++.++.+...|... +.|.++|++|+|||++|+++++.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~ 217 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYL 217 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHH
Confidence 45788999999999998743 35888999999999999999874
No 163
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.50 E-value=0.00034 Score=75.21 Aligned_cols=156 Identities=16% Similarity=0.112 Sum_probs=85.4
Q ss_pred ccccchhHHHHHHHHHhcCCCC-------CCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhC
Q 035555 98 EIFGREKEKSELVNRLLCESSK-------EQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTY 170 (767)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~ 170 (767)
++.|.++.+++|.+.+.-.-.. +-...+-|.++|++|+|||++|+++++. ....|-.+. ...+.....+
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~fi~V~--~seL~~k~~G 259 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATFLRVV--GSELIQKYLG 259 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCEEEEe--cchhhhhhcc
Confidence 4678999999888877422110 1124456889999999999999999984 322232100 0001111000
Q ss_pred CCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCc-----------Chhh---HHHHHHhhhc--CCCCcEEEEEcCchhH
Q 035555 171 SSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE-----------DFYK---WEQFYNCLKT--CLHGSKILITTRKETV 234 (767)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~---~~~l~~~l~~--~~~gs~ilvTtR~~~v 234 (767)
.....+...+.....+.+.+++||+++.- +... ...+...+.. ...+..||.||...+.
T Consensus 260 -----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 260 -----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES 334 (438)
T ss_pred -----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH
Confidence 01111222233333457789999987321 0011 1122222221 1235677878776433
Q ss_pred Hhh-h----cCcceEecCCCChhHHHHHHHHhc
Q 035555 235 ARI-M----GSADIISVNVLSETECWLVFESLG 262 (767)
Q Consensus 235 ~~~-~----~~~~~~~l~~L~~~~~~~l~~~~~ 262 (767)
... + .....+.++..+.++..++|..+.
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 222 1 124578999999999999998765
No 164
>CHL00176 ftsH cell division protein; Validated
Probab=97.50 E-value=0.0016 Score=73.79 Aligned_cols=177 Identities=17% Similarity=0.140 Sum_probs=94.7
Q ss_pred CCccccchhHHHHHHHHH---hcCCC---CCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhh--HHHHHHHHHHH
Q 035555 96 ESEIFGREKEKSELVNRL---LCESS---KEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK--EYGIARAIIEA 167 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~~i~~~i~~~ 167 (767)
-.+++|.++..+++.+.+ ..... -+....+-|.++|++|+|||+||+++++...+ .|-. ..++ ...
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~--p~i~is~s~f----~~~ 255 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV--PFFSISGSEF----VEM 255 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC--CeeeccHHHH----HHH
Confidence 346888877666655543 32211 01123456899999999999999999884321 1111 0111 011
Q ss_pred hhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCc----------ChhhH----HHHHHhhhc--CCCCcEEEEEcCc
Q 035555 168 LTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE----------DFYKW----EQFYNCLKT--CLHGSKILITTRK 231 (767)
Q Consensus 168 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~----~~l~~~l~~--~~~gs~ilvTtR~ 231 (767)
..+ .....+...+.......+++|++||++.- ....+ ..+...+.. ...+-.||.||..
T Consensus 256 ~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~ 330 (638)
T CHL00176 256 FVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNR 330 (638)
T ss_pred hhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCc
Confidence 000 01122333445555678899999999421 01122 222222221 1235556666665
Q ss_pred hhHHh-hh-c---CcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCC
Q 035555 232 ETVAR-IM-G---SADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGL 288 (767)
Q Consensus 232 ~~v~~-~~-~---~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 288 (767)
.+... .+ . -...+.++..+.++-.+++..++..... . .......+++.+.|.
T Consensus 331 ~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~----~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 331 VDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-S----PDVSLELIARRTPGF 387 (638)
T ss_pred hHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-c----hhHHHHHHHhcCCCC
Confidence 43222 11 1 1467888888999999998877633111 1 122356677777773
No 165
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.49 E-value=0.0015 Score=72.91 Aligned_cols=181 Identities=15% Similarity=0.139 Sum_probs=93.2
Q ss_pred CCCccccchhHHHHHHHHHh---cCCC---CCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHh
Q 035555 95 DESEIFGREKEKSELVNRLL---CESS---KEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEAL 168 (767)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l 168 (767)
.-.+++|-++.++++.+.+. .... .+....+-+.++|++|+|||++|+++++...+ .|-... ...+....
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~--~~~~i~--~~~~~~~~ 128 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV--PFFSIS--GSDFVEMF 128 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC--Ceeecc--HHHHHHHH
Confidence 34568898887766655443 1110 01223456889999999999999999885322 221100 00011111
Q ss_pred hCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCcC----------hhhHHH----HHHhhhc--CCCCcEEEEEcCch
Q 035555 169 TYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNED----------FYKWEQ----FYNCLKT--CLHGSKILITTRKE 232 (767)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~----l~~~l~~--~~~gs~ilvTtR~~ 232 (767)
.+ .....+...+.......+.+|++|+++.-. ...+.. +...+.. ...+-.||.||...
T Consensus 129 ~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~ 203 (495)
T TIGR01241 129 VG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRP 203 (495)
T ss_pred hc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCCh
Confidence 00 011223333444445667899999984310 111222 2222221 12344566666553
Q ss_pred h-HHhhh----cCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCc
Q 035555 233 T-VARIM----GSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLP 289 (767)
Q Consensus 233 ~-v~~~~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 289 (767)
. +...+ .-...+.++..+.++-.++|..+...... ....+ ...+++.+.|.-
T Consensus 204 ~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~~----l~~la~~t~G~s 260 (495)
T TIGR01241 204 DVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDVD----LKAVARRTPGFS 260 (495)
T ss_pred hhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccchh----HHHHHHhCCCCC
Confidence 2 11111 12467888888988888888876532211 11112 446777777644
No 166
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.47 E-value=0.00012 Score=50.85 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=33.1
Q ss_pred CCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCccccc
Q 035555 490 YNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLP 531 (767)
Q Consensus 490 ~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp 531 (767)
++|++|++++|. ++.+|..+++|++|+.|++++| .+..++
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 479999999998 8899988999999999999999 555543
No 167
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.46 E-value=0.00016 Score=75.82 Aligned_cols=67 Identities=12% Similarity=-0.006 Sum_probs=52.3
Q ss_pred hhccCCCCcCceEEEecCCccCCccccCCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCCCceEecc
Q 035555 587 AELEKKKNLFDLELRFDCNVIPKNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGN 657 (767)
Q Consensus 587 ~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~ 657 (767)
..+..+.+++.|+++.|....+|. -..+|+.|.+++|..++.+|.. -.++|++|++++|..+..+|.
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCch-hhhhhhheEccCccccccccc
Confidence 345667899999999998888883 2357999999999988888852 247899999999976665543
No 168
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.46 E-value=0.00093 Score=78.94 Aligned_cols=45 Identities=22% Similarity=0.336 Sum_probs=37.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..++||+.++.++++.|.... ..-+.++|++|+|||++|+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999997642 234669999999999999988774
No 169
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00056 Score=77.26 Aligned_cols=123 Identities=12% Similarity=0.214 Sum_probs=82.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCC---CCCCCEEEEEEccCCChHHHHHHHHHcc----cchhhhhhhHHHHHHHHHHHh
Q 035555 96 ESEIFGREKEKSELVNRLLCESSK---EQKGPCVISLVGMGGIGKTTLAQFAYNN----DDVKKILRKEYGIARAIIEAL 168 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~~v~I~G~gGiGKTtLa~~v~~~----~~~~~~F~~~~~i~~~i~~~l 168 (767)
...++|.++.++.+.+.+.....+ .+.+..+....|+.|||||-||++++.. ..---.||-..-.-+.-...+
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrL 569 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRL 569 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHH
Confidence 456899999999999988654331 3446678888999999999999888652 222223444333334444555
Q ss_pred hCCCCCccchHHHHHHHHHhcCCCeE-EEEEeCCCCcChhhHHHHHHhhhcC
Q 035555 169 TYSSSNFVEFQSLMQHIQKHVAGKKL-LLVLDDVWNEDFYKWEQFYNCLKTC 219 (767)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~ 219 (767)
-++++....-++ .-.|-+.++.++| ++.||++.-.++..++.+...+..+
T Consensus 570 IGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 570 IGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred hCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 555554433322 2334555667777 7889999877777888888888765
No 170
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.42 E-value=0.0023 Score=67.03 Aligned_cols=159 Identities=9% Similarity=0.049 Sum_probs=95.1
Q ss_pred cccc-chhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccc----hhhhhhhHHHHHHHHHHHhhC--
Q 035555 98 EIFG-REKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDD----VKKILRKEYGIARAIIEALTY-- 170 (767)
Q Consensus 98 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~----~~~~F~~~~~i~~~i~~~l~~-- 170 (767)
.++| -+..++.+.+.+.... -.....++|+.|+||||+|+.+.+..- ............+.+...-..
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~ 80 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV 80 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE
Confidence 3566 6777888888875432 456779999999999999988865310 000000011111111110000
Q ss_pred ----CCCCccchHHHHHHHHHh----cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCch-hH-HhhhcC
Q 035555 171 ----SSSNFVEFQSLMQHIQKH----VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKE-TV-ARIMGS 240 (767)
Q Consensus 171 ----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v-~~~~~~ 240 (767)
........+++.+.+... ..+.+-++|+|++...+......++..+..-..++.+|++|.+. .+ .+....
T Consensus 81 ~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSR 160 (329)
T PRK08058 81 HLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSR 160 (329)
T ss_pred EEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhh
Confidence 000112223333332221 23556689999998777777788888888767777777777653 22 233455
Q ss_pred cceEecCCCChhHHHHHHHHh
Q 035555 241 ADIISVNVLSETECWLVFESL 261 (767)
Q Consensus 241 ~~~~~l~~L~~~~~~~l~~~~ 261 (767)
...+++.+++.++..+.+...
T Consensus 161 c~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 161 CQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred ceeeeCCCCCHHHHHHHHHHc
Confidence 779999999999998888754
No 171
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.39 E-value=0.00019 Score=71.36 Aligned_cols=79 Identities=18% Similarity=0.112 Sum_probs=47.2
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcccchhhhhhh-------------HHHHHHHHHHHhhCCCCCccc------hHHHHH
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK-------------EYGIARAIIEALTYSSSNFVE------FQSLMQ 183 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-------------~~~i~~~i~~~l~~~~~~~~~------~~~~~~ 183 (767)
....++|+|++|+|||||+++++++.... +|+. ..++++.+...+-........ ......
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34579999999999999999999864433 4443 556666662222211111111 111222
Q ss_pred HHHHh-cCCCeEEEEEeCCC
Q 035555 184 HIQKH-VAGKKLLLVLDDVW 202 (767)
Q Consensus 184 ~l~~~-l~~k~~LlVlDdv~ 202 (767)
..... -.+++.++++|++.
T Consensus 94 ~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHCCCCEEEEEECHH
Confidence 22222 24899999999993
No 172
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.38 E-value=0.0029 Score=67.98 Aligned_cols=163 Identities=21% Similarity=0.179 Sum_probs=94.4
Q ss_pred chhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchh---hhhhhHHHHHHHHHHHhhCCCCCccch
Q 035555 102 REKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVK---KILRKEYGIARAIIEALTYSSSNFVEF 178 (767)
Q Consensus 102 r~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~~i~~~i~~~l~~~~~~~~~~ 178 (767)
|.....++.+.+... . .++.|.|+-++||||+++.+.....-. -.|+... ......
T Consensus 22 ~~~~~~~l~~~~~~~------~-~i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~--------------~~~~~l 80 (398)
T COG1373 22 RRKLLPRLIKKLDLR------P-FIILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLR--------------LDRIEL 80 (398)
T ss_pred HHhhhHHHHhhcccC------C-cEEEEECCccccHHHHHHHHHhhCCcceEEEEecchh--------------cchhhH
Confidence 344555555555322 2 299999999999999997776642111 1122200 000111
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCchhHH-----hh-hcCcceEecCCCChh
Q 035555 179 QSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKETVA-----RI-MGSADIISVNVLSET 252 (767)
Q Consensus 179 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~-----~~-~~~~~~~~l~~L~~~ 252 (767)
.+....+...-..++..++||.|.. ...|......+.+.++. +|++|+-+.... +. .+....+.+-||+..
T Consensus 81 ~d~~~~~~~~~~~~~~yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~ 157 (398)
T COG1373 81 LDLLRAYIELKEREKSYIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFR 157 (398)
T ss_pred HHHHHHHHHhhccCCceEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHH
Confidence 1112222222222778999999965 46899988888887766 788888874332 22 233678999999999
Q ss_pred HHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHH
Q 035555 253 ECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIA 296 (767)
Q Consensus 253 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 296 (767)
|-..+-...+ ....... .-.-.-..||.|-++..-.
T Consensus 158 Efl~~~~~~~-------~~~~~~~-~f~~Yl~~GGfP~~v~~~~ 193 (398)
T COG1373 158 EFLKLKGEEI-------EPSKLEL-LFEKYLETGGFPESVKADL 193 (398)
T ss_pred HHHhhccccc-------chhHHHH-HHHHHHHhCCCcHHHhCcc
Confidence 9876543100 0111111 2223335789998876533
No 173
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.35 E-value=0.0069 Score=63.56 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=71.0
Q ss_pred eEEEEEeCCCCcC---hhhHHHHH---HhhhcCCCCcEEEEEcCchhHHh----hhcC--cceEecCCCChhHHHHHHHH
Q 035555 193 KLLLVLDDVWNED---FYKWEQFY---NCLKTCLHGSKILITTRKETVAR----IMGS--ADIISVNVLSETECWLVFES 260 (767)
Q Consensus 193 ~~LlVlDdv~~~~---~~~~~~l~---~~l~~~~~gs~ilvTtR~~~v~~----~~~~--~~~~~l~~L~~~~~~~l~~~ 260 (767)
+-++|+||.-... ..-|+.+. ..+-. .+-.+||++|-+..... .+.. ...+.+...+++.|..+..+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 6789999984321 11122211 11111 34467888887754443 3322 56889999999999999998
Q ss_pred hcCCCCCC------------cc----hhhHHHHHHHHHhhcCCCcchHHHHHhHHhcCCCHH
Q 035555 261 LGFSGKSM------------EE----RENLEKIGREIIRKCKGLPLVAKTIASLLRSKNTEK 306 (767)
Q Consensus 261 ~~~~~~~~------------~~----~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~ 306 (767)
+....... .. ......-....++.+||=-.-+..+++.++...+++
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 86432110 00 012334456678889999999999999998877654
No 174
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.34 E-value=0.003 Score=58.72 Aligned_cols=144 Identities=18% Similarity=0.171 Sum_probs=81.8
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhh--h-hHHHHHHHHHHHhhC------C
Q 035555 101 GREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKIL--R-KEYGIARAIIEALTY------S 171 (767)
Q Consensus 101 Gr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F--~-~~~~i~~~i~~~l~~------~ 171 (767)
|-++..+.|.+.+.... -...+.++|+.|+||+++|..+.+..--.... . ......+.+...-.. .
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 56677888888876542 34578899999999999998886531101111 0 001111111111000 0
Q ss_pred CCC--ccchHHHHHHHHHhcC-----CCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCchh-H-HhhhcCcc
Q 035555 172 SSN--FVEFQSLMQHIQKHVA-----GKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKET-V-ARIMGSAD 242 (767)
Q Consensus 172 ~~~--~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v-~~~~~~~~ 242 (767)
... ....+++. .+.+.+. ++.-++|+||+.......+..++..+.....++++|++|++.. + .+......
T Consensus 76 ~~~~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~ 154 (162)
T PF13177_consen 76 DKKKKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQ 154 (162)
T ss_dssp TTSSSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSE
T ss_pred ccccchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhce
Confidence 111 22344444 4444442 4567899999998888899999999998888899998888743 2 34444466
Q ss_pred eEecCCCC
Q 035555 243 IISVNVLS 250 (767)
Q Consensus 243 ~~~l~~L~ 250 (767)
.+.+.+++
T Consensus 155 ~i~~~~ls 162 (162)
T PF13177_consen 155 VIRFRPLS 162 (162)
T ss_dssp EEEE----
T ss_pred EEecCCCC
Confidence 66666653
No 175
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.33 E-value=0.00032 Score=66.17 Aligned_cols=97 Identities=23% Similarity=0.338 Sum_probs=49.5
Q ss_pred CEEEEEEccCCChHHHHHHHHHccc---chhhhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeC
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNND---DVKKILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDD 200 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~---~~~~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDd 200 (767)
..-+.++|..|+|||.||.++.+.. .....|-...++...+ ...... ...+...+.+. +-=||||||
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l----~~~~~~-~~~~~~~~~l~-----~~dlLilDD 116 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL----KQSRSD-GSYEELLKRLK-----RVDLLILDD 116 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH----HCCHCC-TTHCHHHHHHH-----TSSCEEEET
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc----cccccc-cchhhhcCccc-----cccEecccc
Confidence 3469999999999999999887642 1122233344444443 222111 12222333332 235888999
Q ss_pred CCCcChhhHHH--HHHhhhcC-CCCcEEEEEcCc
Q 035555 201 VWNEDFYKWEQ--FYNCLKTC-LHGSKILITTRK 231 (767)
Q Consensus 201 v~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 231 (767)
+--.....|.. +...+... .++ .+||||..
T Consensus 117 lG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 117 LGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp CTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred cceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 96554444443 22223221 223 58888874
No 176
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.33 E-value=0.00051 Score=73.58 Aligned_cols=146 Identities=14% Similarity=0.184 Sum_probs=82.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhh-------HHHHHHHH-HHHh
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK-------EYGIARAI-IEAL 168 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-------~~~i~~~i-~~~l 168 (767)
..++||++.++.+...+.... -|.|.|++|+|||++|+.+.....-...|.. ..++...+ +...
T Consensus 20 ~~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~ 91 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQAL 91 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhh
Confidence 358999999999999887653 4889999999999999999873221112221 11111100 0000
Q ss_pred hCCCCCccchHHHHHHHHHhcCC---CeEEEEEeCCCCcChhhHHHHHHhhhcCC---------CCcEEEEEcCchhHH-
Q 035555 169 TYSSSNFVEFQSLMQHIQKHVAG---KKLLLVLDDVWNEDFYKWEQFYNCLKTCL---------HGSKILITTRKETVA- 235 (767)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~~l~~---k~~LlVlDdv~~~~~~~~~~l~~~l~~~~---------~gs~ilvTtR~~~v~- 235 (767)
. +.. .......| ..-++++|+++......-..+...+.... -..++++++.++-..
T Consensus 92 ~-------~~g----~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~ 160 (498)
T PRK13531 92 K-------DEG----RYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEA 160 (498)
T ss_pred h-------hcC----chhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCccc
Confidence 0 000 01111111 11289999999887777777777774321 123465555542211
Q ss_pred -----hhhcC-cceEecCCCChhH-HHHHHHHh
Q 035555 236 -----RIMGS-ADIISVNVLSETE-CWLVFESL 261 (767)
Q Consensus 236 -----~~~~~-~~~~~l~~L~~~~-~~~l~~~~ 261 (767)
..... .-.+.+++++.++ -.+++...
T Consensus 161 g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 161 DSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 11111 3467889997544 47777653
No 177
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.31 E-value=0.00092 Score=63.50 Aligned_cols=122 Identities=17% Similarity=0.238 Sum_probs=72.9
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCC
Q 035555 94 IDESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSS 173 (767)
Q Consensus 94 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~ 173 (767)
.+-..++|.|...+.+++--..=.. +...--|.+||.-|+|||.|++++.+. +....-. -+.....
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glr----------LVEV~k~ 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLNE--YADEGLR----------LVEVDKE 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHc--CCcccceEEecCCCCChHHHHHHHHHH--HHhcCCe----------EEEEcHH
Confidence 4445689999999988874332111 123446889999999999999999883 2221111 1111111
Q ss_pred CccchHHHHHHHHHhcCCCeEEEEEeCCC-CcChhhHHHHHHhhhcC---CCCcEEEEEcCc
Q 035555 174 NFVEFQSLMQHIQKHVAGKKLLLVLDDVW-NEDFYKWEQFYNCLKTC---LHGSKILITTRK 231 (767)
Q Consensus 174 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~-~~~~~~~~~l~~~l~~~---~~gs~ilvTtR~ 231 (767)
...+...+...|+. ...||.++.||+. ++....+..+...+..+ .+...++..|.+
T Consensus 123 dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 123 DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 22233344444433 3689999999984 33446777788877654 233445545544
No 178
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.30 E-value=0.0062 Score=62.96 Aligned_cols=171 Identities=9% Similarity=0.029 Sum_probs=101.8
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccc--h-hhhhhh-HHHHHHHHHHHhhC------C-CCC
Q 035555 106 KSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDD--V-KKILRK-EYGIARAIIEALTY------S-SSN 174 (767)
Q Consensus 106 ~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~--~-~~~F~~-~~~i~~~i~~~l~~------~-~~~ 174 (767)
-+.+.+.+..+. -..-+.++|+.|+||+++|++++...- . ...-.+ .....+.+...-.. + ...
T Consensus 11 ~~~l~~~~~~~r-----l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~ 85 (325)
T PRK06871 11 YQQITQAFQQGL-----GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNK 85 (325)
T ss_pred HHHHHHHHHcCC-----cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCC
Confidence 455666665432 346788999999999999988865210 0 000001 11111111110000 0 001
Q ss_pred ccchHHHHHHHHHhc-----CCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCch-hHH-hhhcCcceEecC
Q 035555 175 FVEFQSLMQHIQKHV-----AGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKE-TVA-RIMGSADIISVN 247 (767)
Q Consensus 175 ~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~-~~~~~~~~~~l~ 247 (767)
....+++. .+.+.+ .+++-++|+|++..........++..+..-..++.+|++|.+. .+. +..+....+.+.
T Consensus 86 ~I~id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~ 164 (325)
T PRK06871 86 DIGVDQVR-EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIH 164 (325)
T ss_pred CCCHHHHH-HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCC
Confidence 11233332 222222 3566788999998888888888999998877777777777653 333 444557899999
Q ss_pred CCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcch
Q 035555 248 VLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLV 291 (767)
Q Consensus 248 ~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 291 (767)
+++.++..+.+..... ... ..+...+..++|.|+.
T Consensus 165 ~~~~~~~~~~L~~~~~-----~~~----~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 165 PPEEQQALDWLQAQSS-----AEI----SEILTALRINYGRPLL 199 (325)
T ss_pred CCCHHHHHHHHHHHhc-----cCh----HHHHHHHHHcCCCHHH
Confidence 9999999988877531 111 1245667889999963
No 179
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.28 E-value=0.0089 Score=57.83 Aligned_cols=175 Identities=19% Similarity=0.226 Sum_probs=101.2
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc---cchhhhhh-h----HHHHHHHHHHHhhCCCCC--ccchHHHHHHHHHhc-CC
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN---DDVKKILR-K----EYGIARAIIEALTYSSSN--FVEFQSLMQHIQKHV-AG 191 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~---~~~~~~F~-~----~~~i~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l-~~ 191 (767)
+.+++.++|.-|+|||+++++.... .++..... . ...+...|...+...... ....++..+.+.... ++
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g 129 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKG 129 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhC
Confidence 4469999999999999999954321 12211111 1 455666666666652211 122334444444444 46
Q ss_pred Ce-EEEEEeCCCCcChhhHHHHHHhhhcCCCCc---EEEEEcCc--------hhHHhhhcCcce-EecCCCChhHHHHHH
Q 035555 192 KK-LLLVLDDVWNEDFYKWEQFYNCLKTCLHGS---KILITTRK--------ETVARIMGSADI-ISVNVLSETECWLVF 258 (767)
Q Consensus 192 k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs---~ilvTtR~--------~~v~~~~~~~~~-~~l~~L~~~~~~~l~ 258 (767)
++ ..+++|++........+.++....--..++ +|+..-.. ....+.-..... |.+.|++.++...++
T Consensus 130 ~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl 209 (269)
T COG3267 130 KRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYL 209 (269)
T ss_pred CCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHH
Confidence 77 899999997766666666655544221111 23332221 111111122344 999999999998888
Q ss_pred HHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHHhH
Q 035555 259 ESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIASL 298 (767)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 298 (767)
.....+...+.+ ---.+....|.....|.|.+|+.++..
T Consensus 210 ~~~Le~a~~~~~-l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 210 RHRLEGAGLPEP-LFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHhccCCCcc-cCChhHHHHHHHHhccchHHHHHHHHH
Confidence 876533322211 111234667889999999999877644
No 180
>PRK06526 transposase; Provisional
Probab=97.28 E-value=0.00086 Score=67.09 Aligned_cols=97 Identities=21% Similarity=0.206 Sum_probs=52.0
Q ss_pred EEEEEEccCCChHHHHHHHHHcccc---hhhhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCC
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNNDD---VKKILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDV 201 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~~~---~~~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv 201 (767)
..+.++|++|+|||+||.++..... .+-.|....++...+..... . ......+... .+.-+||+||+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~----~----~~~~~~l~~l--~~~dlLIIDD~ 168 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHH----A----GRLQAELVKL--GRYPLLIVDEV 168 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHh----c----CcHHHHHHHh--ccCCEEEEccc
Confidence 4689999999999999998876421 22234334444444332211 1 1112223322 23458999999
Q ss_pred CCcChhhHH--HHHHhhhcC-CCCcEEEEEcCch
Q 035555 202 WNEDFYKWE--QFYNCLKTC-LHGSKILITTRKE 232 (767)
Q Consensus 202 ~~~~~~~~~--~l~~~l~~~-~~gs~ilvTtR~~ 232 (767)
.......+. .+...+... ..++ +|+||...
T Consensus 169 g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 169 GYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 643222222 344444321 2344 88888753
No 181
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.27 E-value=0.0012 Score=66.55 Aligned_cols=121 Identities=25% Similarity=0.229 Sum_probs=69.5
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHccc-chhhhhhh---------------------
Q 035555 99 IFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNND-DVKKILRK--------------------- 156 (767)
Q Consensus 99 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~--------------------- 156 (767)
+-+|..+..--.++|+.+ .+..|.+.|.+|.|||.||-+..=.. ..++.|..
T Consensus 226 i~prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 226 IRPRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred cCcccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 456777777778888754 67899999999999999995542110 11122221
Q ss_pred ------HHHHHHHHHHHhhCCCCCccchHHHHHHH---------HHhcCCC---eEEEEEeCCCCcChhhHHHHHHhhhc
Q 035555 157 ------EYGIARAIIEALTYSSSNFVEFQSLMQHI---------QKHVAGK---KLLLVLDDVWNEDFYKWEQFYNCLKT 218 (767)
Q Consensus 157 ------~~~i~~~i~~~l~~~~~~~~~~~~~~~~l---------~~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~l~~ 218 (767)
..+-.-+-++.+..... ...+.+...+ ..+++|+ +-++|+|.+.+-.. .++...+..
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~~--~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp---heikTiltR 374 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPNE--PGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP---HELKTILTR 374 (436)
T ss_pred hhhccchHHHHHhHHHHHhcccc--cchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH---HHHHHHHHh
Confidence 11111112222222111 1111111111 1234554 35899999977554 556666777
Q ss_pred CCCCcEEEEEcC
Q 035555 219 CLHGSKILITTR 230 (767)
Q Consensus 219 ~~~gs~ilvTtR 230 (767)
.+.||||+.|-.
T Consensus 375 ~G~GsKIVl~gd 386 (436)
T COG1875 375 AGEGSKIVLTGD 386 (436)
T ss_pred ccCCCEEEEcCC
Confidence 889999998875
No 182
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.26 E-value=0.003 Score=73.79 Aligned_cols=122 Identities=17% Similarity=0.248 Sum_probs=68.7
Q ss_pred CccccchhHHHHHHHHHhcCCC---CCCCCCEEEEEEccCCChHHHHHHHHHcccchh-hhhhhHHHHHHHHHHHhhCCC
Q 035555 97 SEIFGREKEKSELVNRLLCESS---KEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVK-KILRKEYGIARAIIEALTYSS 172 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~~i~~~i~~~l~~~~ 172 (767)
..++|.++.++.+.+.+..... +.+....++.++|+.|+|||+||+.++...... ..|+...-....-...+-+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~ 533 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAP 533 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCC
Confidence 4578999999999888874321 012244578999999999999999998742110 011111000001111222222
Q ss_pred CCccchHHHHHHHHHhcCC-CeEEEEEeCCCCcChhhHHHHHHhhhcC
Q 035555 173 SNFVEFQSLMQHIQKHVAG-KKLLLVLDDVWNEDFYKWEQFYNCLKTC 219 (767)
Q Consensus 173 ~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~~~~~~l~~~l~~~ 219 (767)
+.....++ ...+.+.++. ..-+++||++.......+..+...+..+
T Consensus 534 ~gyvg~~~-~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 534 PGYVGFEQ-GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred CCCcccch-hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 21111111 1122333333 3459999999888888888888877654
No 183
>PHA00729 NTP-binding motif containing protein
Probab=97.26 E-value=0.002 Score=62.23 Aligned_cols=114 Identities=21% Similarity=0.337 Sum_probs=62.4
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCC-e-EEEEEeC
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGK-K-LLLVLDD 200 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-~-~LlVlDd 200 (767)
+...|.|+|.+|+||||||..+.+. +...+.. +.........+......+.+++.+.+.....+. + =+||+||
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~--l~~~l~~---l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd 90 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD--VFWKLNN---LSTKDDAWQYVQNSYFFELPDALEKIQDAIDNDYRIPLIIFDD 90 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH--HHhhccc---ccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 4457899999999999999999883 2111100 000000001112233456666777776655432 1 3799999
Q ss_pred C--CCcChhhHH--------HHHHhhhcCCCCcEEEEEcCchhHHhhhcCcceEecCCCChhHHHHHHHHhcC
Q 035555 201 V--WNEDFYKWE--------QFYNCLKTCLHGSKILITTRKETVARIMGSADIISVNVLSETECWLVFESLGF 263 (767)
Q Consensus 201 v--~~~~~~~~~--------~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~ 263 (767)
+ |-.. ..|. .+...+. .....+.+.++++++..+.+..+..
T Consensus 91 ~G~~~~~-~~wh~~~~~~yf~L~~aLr---------------------SR~~l~il~~ls~edL~~~Lr~Rg~ 141 (226)
T PHA00729 91 AGIWLSK-YVWYEDYMKTFYKIYALIR---------------------TRVSAVIFTTPSPEDLAFYLREKGW 141 (226)
T ss_pred Cchhhcc-cchhhhccchHHHHHHHHH---------------------hhCcEEEEecCCHHHHHHHHHhCCC
Confidence 5 3221 1133 1222221 1234566667788888888887654
No 184
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.25 E-value=0.0002 Score=81.73 Aligned_cols=105 Identities=24% Similarity=0.150 Sum_probs=55.8
Q ss_pred CcccEEeecCCcccc-ccchhhc-CCCCCcEEEccCCccc-cccCcccccCcCCcEeeCCCCCCcccccccCcCCcCCcc
Q 035555 466 IHLKYLNLSSQKKIK-RLPETLC-ELYNLECLAISFCTNL-RQLPQGIGKLRKLMYLDNDYTNSLRYLPVGIRELIRLRR 542 (767)
Q Consensus 466 ~~L~~L~L~~~~~~~-~lp~~~~-~l~~L~~L~L~~~~~l-~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~ 542 (767)
.+|++|++++...+. .-|..++ .||+|+.|.+++-... .++-....+++||..||++++ ++..+ .+++.|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 345555555544221 1222233 3666666666653321 122223345667777777766 44444 56666666666
Q ss_pred cceeEecCccCCCCChhhhhcCCCCCCeeeeC
Q 035555 543 VRKFVVGGGYDRACSLESLKRLILLRECRIHG 574 (767)
Q Consensus 543 L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~ 574 (767)
|......... ...+.+|-+|++|+.|+|+.
T Consensus 200 L~mrnLe~e~--~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 200 LSMRNLEFES--YQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred HhccCCCCCc--hhhHHHHhcccCCCeeeccc
Confidence 6655444443 34455666666666666665
No 185
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.21 E-value=0.00034 Score=72.25 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=42.4
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 98 EIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
+++|.++.++++++++.....+.....+++.++|++|+||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999997754323345689999999999999999999873
No 186
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.21 E-value=0.0032 Score=68.87 Aligned_cols=162 Identities=13% Similarity=0.124 Sum_probs=85.0
Q ss_pred CccccchhHHHHHHHHHhcCCC-------CCCCCCEEEEEEccCCChHHHHHHHHHcccchh--------hhhhhHHHHH
Q 035555 97 SEIFGREKEKSELVNRLLCESS-------KEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVK--------KILRKEYGIA 161 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~~~~~i~ 161 (767)
.++.|.+..+++|.+.+..+-. .+-...+-|.++|++|.|||++|+++++..... ..|-... .
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~--~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIK--G 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEecc--c
Confidence 4578899999998887642110 011234568999999999999999999852111 1111100 0
Q ss_pred HHHHHHhhCCCCCccchHHHHHHHHHh-cCCCeEEEEEeCCCCcC-------hhh-----HHHHHHhhhcC--CCCcEEE
Q 035555 162 RAIIEALTYSSSNFVEFQSLMQHIQKH-VAGKKLLLVLDDVWNED-------FYK-----WEQFYNCLKTC--LHGSKIL 226 (767)
Q Consensus 162 ~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~-------~~~-----~~~l~~~l~~~--~~gs~il 226 (767)
..++....+ ........+....+.. -.+++++++||+++..- ..+ ..++...+... ..+..||
T Consensus 260 ~eLl~kyvG--ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI 337 (512)
T TIGR03689 260 PELLNKYVG--ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVI 337 (512)
T ss_pred hhhcccccc--hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEE
Confidence 001100000 0001111222222222 23578999999995310 011 12333333321 1334455
Q ss_pred EEcCchhHHh-hh----cCcceEecCCCChhHHHHHHHHhc
Q 035555 227 ITTRKETVAR-IM----GSADIISVNVLSETECWLVFESLG 262 (767)
Q Consensus 227 vTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~l~~~~~ 262 (767)
.||...+... .+ .-...|.++..+.++..++|..+.
T Consensus 338 ~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 338 GASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred eccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 5665433211 11 114468999999999999999875
No 187
>PRK12377 putative replication protein; Provisional
Probab=97.21 E-value=0.00037 Score=69.11 Aligned_cols=98 Identities=20% Similarity=0.099 Sum_probs=54.2
Q ss_pred EEEEEEccCCChHHHHHHHHHcccchh---hhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCC
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNNDDVK---KILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDV 201 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv 201 (767)
..+.++|.+|+|||+||.++++...-. ..|-...++...+-..... ........+ . + .+-=||||||+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~----~~~~~~~l~---~-l-~~~dLLiIDDl 172 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDN----GQSGEKFLQ---E-L-CKVDLLVLDEI 172 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhc----cchHHHHHH---H-h-cCCCEEEEcCC
Confidence 578999999999999999998852211 1222244555554443321 111122222 2 2 34569999999
Q ss_pred CCcChhhHH--HHHHhhhcC-CCCcEEEEEcCc
Q 035555 202 WNEDFYKWE--QFYNCLKTC-LHGSKILITTRK 231 (767)
Q Consensus 202 ~~~~~~~~~--~l~~~l~~~-~~gs~ilvTtR~ 231 (767)
.......|. .+...+... .+.--+||||..
T Consensus 173 g~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 173 GIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 544333444 344444432 223347888874
No 188
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.19 E-value=0.0016 Score=76.62 Aligned_cols=132 Identities=19% Similarity=0.214 Sum_probs=76.8
Q ss_pred CccccchhHHHHHHHHHhcCCC---CCCCCCEEEEEEccCCChHHHHHHHHHccc----chhhhhhhHHHHHHHHHHHhh
Q 035555 97 SEIFGREKEKSELVNRLLCESS---KEQKGPCVISLVGMGGIGKTTLAQFAYNND----DVKKILRKEYGIARAIIEALT 169 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~~i~~~i~~~l~ 169 (767)
..++|.++.++.+.+.+..... ..+.+..++.++|+.|+|||.||+++.... ..--.|+...-....-...+-
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~ 645 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLK 645 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhcccc
Confidence 4689999999999998864311 123355689999999999999998776531 100112211000111112222
Q ss_pred CCCCCc---cchHHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCC-----------CCcEEEEEcCc
Q 035555 170 YSSSNF---VEFQSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCL-----------HGSKILITTRK 231 (767)
Q Consensus 170 ~~~~~~---~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 231 (767)
+..+.. .....+...+++ ...-+|+||++...+...++.+...+..+. ..+-||+||..
T Consensus 646 g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 646 GSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred CCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 222221 122233333332 445699999998777777888887776652 34556666653
No 189
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.19 E-value=0.0012 Score=71.70 Aligned_cols=185 Identities=16% Similarity=0.146 Sum_probs=112.9
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHccc--c--hhhhhhhHHHHHHHHHHH-----
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNND--D--VKKILRKEYGIARAIIEA----- 167 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~--~--~~~~F~~~~~i~~~i~~~----- 167 (767)
++++|-+.....|...+.... -..-....|+.|+||||+|+-++..- . ............+.|...
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~Dv 90 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDV 90 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccc
Confidence 467999999999999997653 33456689999999999998886421 0 111111122333333221
Q ss_pred ---hhCCCCCccchHHHHHHHHHhc-CCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCc-hhH-HhhhcCc
Q 035555 168 ---LTYSSSNFVEFQSLMQHIQKHV-AGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRK-ETV-ARIMGSA 241 (767)
Q Consensus 168 ---l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v-~~~~~~~ 241 (767)
-..+.....+..++.+.+.-.- +++--..|+|.|.-.....|..++.-+..-......|+.|++ ..+ .+..+.+
T Consensus 91 iEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRc 170 (515)
T COG2812 91 IEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRC 170 (515)
T ss_pred hhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhcc
Confidence 0111111122222222222111 345568999999777778888888888765555555555554 444 4556668
Q ss_pred ceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcc
Q 035555 242 DIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPL 290 (767)
Q Consensus 242 ~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 290 (767)
..|.++.++.++....+...+-......+ ++....|++..+|..-
T Consensus 171 q~f~fkri~~~~I~~~L~~i~~~E~I~~e----~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 171 QRFDFKRLDLEEIAKHLAAILDKEGINIE----EDALSLIARAAEGSLR 215 (515)
T ss_pred ccccccCCCHHHHHHHHHHHHHhcCCccC----HHHHHHHHHHcCCChh
Confidence 89999999999999988887754443222 2345667777776543
No 190
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.18 E-value=0.00057 Score=71.00 Aligned_cols=89 Identities=16% Similarity=0.128 Sum_probs=49.9
Q ss_pred HHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhh-------------HHHHHHHHHHHhhCCCCC
Q 035555 108 ELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK-------------EYGIARAIIEALTYSSSN 174 (767)
Q Consensus 108 ~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-------------~~~i~~~i~~~l~~~~~~ 174 (767)
++++++..-. .-...+|+|++|+||||||++||++.... +|+. +.++.+.+...+-.+...
T Consensus 158 rvID~l~PIG-----kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d 231 (416)
T PRK09376 158 RIIDLIAPIG-----KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFD 231 (416)
T ss_pred eeeeeecccc-----cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCC
Confidence 4555554321 33468899999999999999999964433 5654 444555554221111111
Q ss_pred c-cchH-----HHHHHHHHh-cCCCeEEEEEeCCC
Q 035555 175 F-VEFQ-----SLMQHIQKH-VAGKKLLLVLDDVW 202 (767)
Q Consensus 175 ~-~~~~-----~~~~~l~~~-l~~k~~LlVlDdv~ 202 (767)
. ...+ .....-... -.+++++|++|++.
T Consensus 232 ~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 232 EPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 1 1111 111111111 25799999999993
No 191
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.16 E-value=0.0039 Score=63.18 Aligned_cols=35 Identities=31% Similarity=0.338 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHc
Q 035555 104 KEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 104 ~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
+.++++...+... +.|.+.|++|+|||++|+++..
T Consensus 9 ~l~~~~l~~l~~g--------~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 9 RVTSRALRYLKSG--------YPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred HHHHHHHHHHhcC--------CeEEEEcCCCCCHHHHHHHHHH
Confidence 4455555555432 2567999999999999999986
No 192
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.015 Score=59.99 Aligned_cols=173 Identities=10% Similarity=0.049 Sum_probs=104.5
Q ss_pred HHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccc--hhhhhhh-HHHHHHHHHHHhhC------CC--C
Q 035555 105 EKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDD--VKKILRK-EYGIARAIIEALTY------SS--S 173 (767)
Q Consensus 105 ~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~--~~~~F~~-~~~i~~~i~~~l~~------~~--~ 173 (767)
.-+++.+.+... .-...+.++|+.|+||+++|..+...-- -...-.+ ...-.+.+...-.. +. .
T Consensus 11 ~~~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~ 85 (319)
T PRK06090 11 VWQNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEG 85 (319)
T ss_pred HHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCC
Confidence 345566665433 2456788999999999999988754200 0000000 01111111110000 00 1
Q ss_pred CccchHHHHHHHHHhc-----CCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCch-hH-HhhhcCcceEec
Q 035555 174 NFVEFQSLMQHIQKHV-----AGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKE-TV-ARIMGSADIISV 246 (767)
Q Consensus 174 ~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v-~~~~~~~~~~~l 246 (767)
.....+++. .+.+.+ .++.-++|+|++...+......+...+..-..++.+|++|.+. .+ .+..+....+.+
T Consensus 86 ~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~ 164 (319)
T PRK06090 86 KSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVV 164 (319)
T ss_pred CcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeC
Confidence 112233332 233333 3456689999998888888889999998877777777766653 33 455566789999
Q ss_pred CCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHH
Q 035555 247 NVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTI 295 (767)
Q Consensus 247 ~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 295 (767)
.+++.+++.+.+..... . .+..+++.++|.|+.+..+
T Consensus 165 ~~~~~~~~~~~L~~~~~-----~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 165 TPPSTAQAMQWLKGQGI-----T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred CCCCHHHHHHHHHHcCC-----c-------hHHHHHHHcCCCHHHHHHH
Confidence 99999999998876421 1 1345788999999876544
No 193
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.14 E-value=0.0054 Score=64.18 Aligned_cols=204 Identities=15% Similarity=0.097 Sum_probs=111.5
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccch-hhhhhh----------HHHHHH
Q 035555 94 IDESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDV-KKILRK----------EYGIAR 162 (767)
Q Consensus 94 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~----------~~~i~~ 162 (767)
.++..++||+.++..+.+++...-. ....+-+-|.|-+|.|||.+...++.+..- ...|.. ...+..
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 3567799999999999999976543 235567889999999999999988876321 111111 445555
Q ss_pred HHHHHhhCCCCCccchHHHHHHHHHhcCCC--eEEEEEeCCCCcChhhHHHHHHhhhc-CCCCcEEEEEcCc--hhHH--
Q 035555 163 AIIEALTYSSSNFVEFQSLMQHIQKHVAGK--KLLLVLDDVWNEDFYKWEQFYNCLKT-CLHGSKILITTRK--ETVA-- 235 (767)
Q Consensus 163 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~--~~v~-- 235 (767)
.|...+-..........+.+..+.+...+. -+++|+|.++.-....-..+-..|.+ .-+++|+|+.--- -+..
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 555555111111111255566666666543 58899998843211111122222222 1355665543221 1111
Q ss_pred ---hhhc----CcceEecCCCChhHHHHHHHHhcCCCCCC-cchhhHHHHHHHHHhhcCCCcchHHHHHhHH
Q 035555 236 ---RIMG----SADIISVNVLSETECWLVFESLGFSGKSM-EERENLEKIGREIIRKCKGLPLVAKTIASLL 299 (767)
Q Consensus 236 ---~~~~----~~~~~~l~~L~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 299 (767)
.... .-..+.-+|-+.++..++|..+.-..... .....++-.|++++.--|-+--|+-+.-+.+
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 1111 13466778899999999999886332221 1222333334444444444444444444333
No 194
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.14 E-value=0.00047 Score=65.80 Aligned_cols=120 Identities=23% Similarity=0.204 Sum_probs=55.3
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhh------------------------
Q 035555 101 GREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK------------------------ 156 (767)
Q Consensus 101 Gr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~------------------------ 156 (767)
.+..+....++.|.. ..+|.+.|++|.|||.||.+..-+.-..+.|+.
T Consensus 4 p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 455666777777762 238999999999999999777543222223322
Q ss_pred HHHHHHHHHHHhhCCCCCccchHHHHHH------HHHhcCCC---eEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEE
Q 035555 157 EYGIARAIIEALTYSSSNFVEFQSLMQH------IQKHVAGK---KLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILI 227 (767)
Q Consensus 157 ~~~i~~~i~~~l~~~~~~~~~~~~~~~~------l~~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv 227 (767)
..-...-+...+..-. .....+.+... --.+++|+ ..++|+|++.+..... +...+...+.||+|++
T Consensus 76 ~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~---~k~ilTR~g~~skii~ 151 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEE---LKMILTRIGEGSKIII 151 (205)
T ss_dssp --TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHH---HHHHHTTB-TT-EEEE
T ss_pred HHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHH---HHHHHcccCCCcEEEE
Confidence 0000011111111100 00111111110 01244554 4599999997665544 4555556678999999
Q ss_pred EcCch
Q 035555 228 TTRKE 232 (767)
Q Consensus 228 TtR~~ 232 (767)
+--..
T Consensus 152 ~GD~~ 156 (205)
T PF02562_consen 152 TGDPS 156 (205)
T ss_dssp EE---
T ss_pred ecCce
Confidence 87643
No 195
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.13 E-value=0.0014 Score=56.16 Aligned_cols=20 Identities=45% Similarity=0.514 Sum_probs=18.4
Q ss_pred EEEEccCCChHHHHHHHHHc
Q 035555 127 ISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 127 v~I~G~gGiGKTtLa~~v~~ 146 (767)
|-|+|.+|+|||++|+.++.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999887
No 196
>PRK08181 transposase; Validated
Probab=97.12 E-value=0.0011 Score=66.66 Aligned_cols=96 Identities=21% Similarity=0.211 Sum_probs=51.9
Q ss_pred EEEEEccCCChHHHHHHHHHccc---chhhhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCC
Q 035555 126 VISLVGMGGIGKTTLAQFAYNND---DVKKILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVW 202 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~~---~~~~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 202 (767)
-+.++|++|+|||.||.++.+.. ..+-.|-...++...+..... ..........+ .+.=||||||+.
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~-----~~~~~~~l~~l-----~~~dLLIIDDlg 177 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARR-----ELQLESAIAKL-----DKFDLLILDDLA 177 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHh-----CCcHHHHHHHH-----hcCCEEEEeccc
Confidence 58999999999999999987631 112233334444444433211 11222222222 233599999995
Q ss_pred CcChhhHH--HHHHhhhcCCCCcEEEEEcCc
Q 035555 203 NEDFYKWE--QFYNCLKTCLHGSKILITTRK 231 (767)
Q Consensus 203 ~~~~~~~~--~l~~~l~~~~~gs~ilvTtR~ 231 (767)
......|. .+...+.....+..+||||..
T Consensus 178 ~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 178 YVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 43322332 344444432112358889875
No 197
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.08 E-value=0.0024 Score=57.73 Aligned_cols=24 Identities=46% Similarity=0.419 Sum_probs=21.4
Q ss_pred EEEEEEccCCChHHHHHHHHHccc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNND 148 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~~ 148 (767)
..+.|+|++|+||||+|+.++...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 478999999999999999998753
No 198
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.08 E-value=1.9e-05 Score=85.65 Aligned_cols=107 Identities=18% Similarity=0.152 Sum_probs=64.0
Q ss_pred hhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCCcccc-CCCCccEEEEeccCCCCCCCCCCCCC
Q 035555 561 LKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPKNWIM-SLTNLRYLSLSLFKNCEQLLPLGKLQ 639 (767)
Q Consensus 561 l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~l~~l~~l~ 639 (767)
|.-++.|+.|+++.. .+ ....++..+++|++|+|++|....+|..=. .+. |+.|.|.+| -++.+..+.+|.
T Consensus 183 Lqll~ale~LnLshN----k~--~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN-~l~tL~gie~Lk 254 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHN----KF--TKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN-ALTTLRGIENLK 254 (1096)
T ss_pred HHHHHHhhhhccchh----hh--hhhHHHHhcccccccccccchhccccccchhhhh-heeeeeccc-HHHhhhhHHhhh
Confidence 344445555555441 11 123467777888888888888776665211 333 888888765 566677777888
Q ss_pred CCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCcc
Q 035555 640 SLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYME 686 (767)
Q Consensus 640 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 686 (767)
+|+.|++++|- +.....- ..+..+..|+.|.|.+|+
T Consensus 255 sL~~LDlsyNl-l~~hseL----------~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 255 SLYGLDLSYNL-LSEHSEL----------EPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhccchhHhh-hhcchhh----------hHHHHHHHHHHHhhcCCc
Confidence 88888887764 2221110 113356667777777765
No 199
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.07 E-value=0.0024 Score=65.74 Aligned_cols=119 Identities=17% Similarity=0.149 Sum_probs=67.1
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccc---hhhhhhhHHHHHHHHHHHhhCCCCCccc
Q 035555 101 GREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDD---VKKILRKEYGIARAIIEALTYSSSNFVE 177 (767)
Q Consensus 101 Gr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~---~~~~F~~~~~i~~~i~~~l~~~~~~~~~ 177 (767)
+|........+++..-.. ....+-+.++|..|+|||.||.++++..- +...|-....+...+....... .
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~-----~ 207 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDG-----S 207 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcC-----c
Confidence 455555555555543221 11345789999999999999999988532 1112222444555554443211 1
Q ss_pred hHHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHH--HHHhh-hcC-CCCcEEEEEcCc
Q 035555 178 FQSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQ--FYNCL-KTC-LHGSKILITTRK 231 (767)
Q Consensus 178 ~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~ilvTtR~ 231 (767)
..+. +... .+-=||||||+.-+....|.. +...+ ... ..+-.+|+||.-
T Consensus 208 ~~~~---l~~l--~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 208 VKEK---IDAV--KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred HHHH---HHHh--cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 2222 2222 245689999997665666754 44433 322 234558888873
No 200
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.07 E-value=0.011 Score=61.80 Aligned_cols=170 Identities=9% Similarity=0.038 Sum_probs=102.7
Q ss_pred HHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHccc---chhhhhhh-HHHHHHHHHHHhhCCCC-------
Q 035555 105 EKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNND---DVKKILRK-EYGIARAIIEALTYSSS------- 173 (767)
Q Consensus 105 ~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~---~~~~~F~~-~~~i~~~i~~~l~~~~~------- 173 (767)
.-+++.+.+..+. -..-+.++|+.|+||+++|.+++..- .-...-.+ ...-.+.+.. +..+
T Consensus 10 ~~~~l~~~~~~~r-----l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~---g~HPD~~~i~p 81 (334)
T PRK07993 10 DYEQLVGSYQAGR-----GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQA---GTHPDYYTLTP 81 (334)
T ss_pred HHHHHHHHHHcCC-----cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc---CCCCCEEEEec
Confidence 3456666665432 45678899999999999998875420 00000001 1111111110 1111
Q ss_pred ----CccchHHHHHHHHHhc-----CCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCc-hhHH-hhhcCcc
Q 035555 174 ----NFVEFQSLMQHIQKHV-----AGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRK-ETVA-RIMGSAD 242 (767)
Q Consensus 174 ----~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~-~~~~~~~ 242 (767)
.....+++.+ +.+.+ .+++-++|+|++...+......++..+.+-..++.+|++|.+ ..+. +..+...
T Consensus 82 ~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq 160 (334)
T PRK07993 82 EKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCR 160 (334)
T ss_pred ccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccc
Confidence 1122333332 22222 356778999999888888888899999887777777777765 3343 4455577
Q ss_pred eEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchH
Q 035555 243 IISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVA 292 (767)
Q Consensus 243 ~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 292 (767)
.+.+.+++.+++.+.+..... .. .+.+..++..++|.|...
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~~-----~~----~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSREVT-----MS----QDALLAALRLSAGAPGAA 201 (334)
T ss_pred cccCCCCCHHHHHHHHHHccC-----CC----HHHHHHHHHHcCCCHHHH
Confidence 899999999999888865421 11 112567889999999644
No 201
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.05 E-value=0.0039 Score=62.37 Aligned_cols=165 Identities=18% Similarity=0.194 Sum_probs=89.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc-cchhhhhhh-------------HHHHH
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN-DDVKKILRK-------------EYGIA 161 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~-------------~~~i~ 161 (767)
...++|-.++..++.+++....- .++.--|.|+|+.|.|||+|...+..+ .++.++|-. ...|.
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 45688998888888888764322 123346889999999999999777655 234444422 33333
Q ss_pred HHHHHHhhCCCCCccchHHHHHHHHHhcC------CCeEEEEEeCCCCcChh-hHHHHHHhh---hc-CCCCcEEEEEcC
Q 035555 162 RAIIEALTYSSSNFVEFQSLMQHIQKHVA------GKKLLLVLDDVWNEDFY-KWEQFYNCL---KT-CLHGSKILITTR 230 (767)
Q Consensus 162 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~------~k~~LlVlDdv~~~~~~-~~~~l~~~l---~~-~~~gs~ilvTtR 230 (767)
+++..++........+..+...+|-..|+ +-++++|+|..+-.-.. .-..+-..| .. ..|-|-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 33333332222222233333344444443 24578888877432111 111122222 21 246677789999
Q ss_pred chhH-------HhhhcCcceEecCCCChhHHHHHHHHhc
Q 035555 231 KETV-------ARIMGSADIISVNVLSETECWLVFESLG 262 (767)
Q Consensus 231 ~~~v-------~~~~~~~~~~~l~~L~~~~~~~l~~~~~ 262 (767)
-... -....-..++-++.++.++-.+++++..
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 6322 2222222344556677777777777654
No 202
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.05 E-value=0.0025 Score=75.67 Aligned_cols=120 Identities=12% Similarity=0.134 Sum_probs=70.0
Q ss_pred CccccchhHHHHHHHHHhcCCCC---CCCCCEEEEEEccCCChHHHHHHHHHcccc----hhhhhhhHHHHHHHHHHHhh
Q 035555 97 SEIFGREKEKSELVNRLLCESSK---EQKGPCVISLVGMGGIGKTTLAQFAYNNDD----VKKILRKEYGIARAIIEALT 169 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~----~~~~F~~~~~i~~~i~~~l~ 169 (767)
..++|.+..++.+.+.+.....+ .+....++.++|+.|+|||++|+.+..... ---.|+...-........+-
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~ 644 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLI 644 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhc
Confidence 45899999999999988754221 122356788999999999999999876310 00111111000011112222
Q ss_pred CCCCCc---cchHHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhhcC
Q 035555 170 YSSSNF---VEFQSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTC 219 (767)
Q Consensus 170 ~~~~~~---~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~ 219 (767)
+..+.. .....+...++. ....+++||++...+...+..+...+..+
T Consensus 645 g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g 694 (852)
T TIGR03346 645 GAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDG 694 (852)
T ss_pred CCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcC
Confidence 222221 112223333322 23348999999888888888888888654
No 203
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.03 E-value=0.003 Score=62.56 Aligned_cols=100 Identities=16% Similarity=0.172 Sum_probs=54.2
Q ss_pred CEEEEEEccCCChHHHHHHHHHcccchh---hhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeC
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNNDDVK---KILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDD 200 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDd 200 (767)
...+.++|.+|+|||+||.++++..... -.|-...++...+-..... .....+.+. +.+. +.=+||+||
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~---~~~~~~~~l----~~l~-~~dlLvIDD 170 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSN---SETSEEQLL----NDLS-NVDLLVIDE 170 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhh---ccccHHHHH----HHhc-cCCEEEEeC
Confidence 3478999999999999999998852111 1111234444443333211 111122222 2233 344889999
Q ss_pred CCCcChhhHHH--HHHhhhcC-CCCcEEEEEcCc
Q 035555 201 VWNEDFYKWEQ--FYNCLKTC-LHGSKILITTRK 231 (767)
Q Consensus 201 v~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 231 (767)
+.......|.. +...+... ...-.+||||..
T Consensus 171 ig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 171 IGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 96655455654 33334322 223448888874
No 204
>PRK08118 topology modulation protein; Reviewed
Probab=97.01 E-value=0.0012 Score=61.72 Aligned_cols=65 Identities=22% Similarity=0.248 Sum_probs=39.7
Q ss_pred EEEEEccCCChHHHHHHHHHcccchh-hhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCC
Q 035555 126 VISLVGMGGIGKTTLAQFAYNNDDVK-KILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVW 202 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 202 (767)
.|.|+|++|+||||||+.+++...+. -+|+.... . ......+.++..+.+.+.+++.. .|+|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~-------~---~~w~~~~~~~~~~~~~~~~~~~~--wVidG~~ 68 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW-------K---PNWEGVPKEEQITVQNELVKEDE--WIIDGNY 68 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc-------c---cCCcCCCHHHHHHHHHHHhcCCC--EEEeCCc
Confidence 58999999999999999999864433 33444111 0 11112223345555556666665 4778874
No 205
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.00 E-value=0.011 Score=61.69 Aligned_cols=93 Identities=14% Similarity=0.222 Sum_probs=67.1
Q ss_pred CCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCc-hhHH-hhhcCcceEecCCCChhHHHHHHHHhcCCCCCC
Q 035555 191 GKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRK-ETVA-RIMGSADIISVNVLSETECWLVFESLGFSGKSM 268 (767)
Q Consensus 191 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~-~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~ 268 (767)
++.-++|+|++...+...+..++..+..-.+++.+|++|.+ ..+. +..+....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 45668899999988888999999999887777766665555 4433 445557899999999999999887652 1
Q ss_pred cchhhHHHHHHHHHhhcCCCcchHHHH
Q 035555 269 EERENLEKIGREIIRKCKGLPLVAKTI 295 (767)
Q Consensus 269 ~~~~~~~~~~~~i~~~~~g~PLai~~~ 295 (767)
.. ...++..++|.|..+..+
T Consensus 206 ~~-------~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 AD-------ADALLAEAGGAPLAALAL 225 (342)
T ss_pred Ch-------HHHHHHHcCCCHHHHHHH
Confidence 11 223567789999755433
No 206
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.00 E-value=0.0044 Score=72.70 Aligned_cols=178 Identities=14% Similarity=0.082 Sum_probs=93.0
Q ss_pred CccccchhHHHHHHHHHhcCCCC-------CCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhh--HHHHHHHHHHH
Q 035555 97 SEIFGREKEKSELVNRLLCESSK-------EQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK--EYGIARAIIEA 167 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~~i~~~i~~~ 167 (767)
.++.|.++.+++|.+.+...-.. +-...+.|.++|++|+|||+||+++++. ....|-. ..++. ..
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~i~i~~~~i~----~~ 251 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYFISINGPEIM----SK 251 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeEEEEecHHHh----cc
Confidence 35889999999988876432100 1123467889999999999999999884 2222211 00110 00
Q ss_pred hhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCcC-----------hhhHHHHHHhhhcC-CCCcEEEE-EcCchh-
Q 035555 168 LTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNED-----------FYKWEQFYNCLKTC-LHGSKILI-TTRKET- 233 (767)
Q Consensus 168 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~~~-~~gs~ilv-TtR~~~- 233 (767)
......+.+...+.......+.+|++|++.... ......+...+... ..+..++| ||....
T Consensus 252 -----~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ 326 (733)
T TIGR01243 252 -----YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDA 326 (733)
T ss_pred -----cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhh
Confidence 001112223333444445667899999984210 11122344444322 23334444 444322
Q ss_pred HHhhhc----CcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcc
Q 035555 234 VARIMG----SADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPL 290 (767)
Q Consensus 234 v~~~~~----~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 290 (767)
+...+. -...+.+...+.++-.+++....-... ...... ...+++.+.|.--
T Consensus 327 ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~-l~~d~~----l~~la~~t~G~~g 382 (733)
T TIGR01243 327 LDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP-LAEDVD----LDKLAEVTHGFVG 382 (733)
T ss_pred cCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC-CccccC----HHHHHHhCCCCCH
Confidence 211111 134677777788888888875432111 111111 4567777777653
No 207
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.00 E-value=0.0037 Score=73.94 Aligned_cols=122 Identities=13% Similarity=0.156 Sum_probs=68.5
Q ss_pred CccccchhHHHHHHHHHhcCCC---CCCCCCEEEEEEccCCChHHHHHHHHHcccch-hh---hhhhHHHHHHHHHHHhh
Q 035555 97 SEIFGREKEKSELVNRLLCESS---KEQKGPCVISLVGMGGIGKTTLAQFAYNNDDV-KK---ILRKEYGIARAIIEALT 169 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~-~~---~F~~~~~i~~~i~~~l~ 169 (767)
..++|.+..++.+...+..... +.+.+..++.++|+.|+|||++|+.+++...- .. .|+...-........+-
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~Li 647 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHh
Confidence 3588999999998888864321 01223457889999999999999998763110 01 12221111111222222
Q ss_pred CCCCCccchHHHHHHHHHhcCC-CeEEEEEeCCCCcChhhHHHHHHhhhcC
Q 035555 170 YSSSNFVEFQSLMQHIQKHVAG-KKLLLVLDDVWNEDFYKWEQFYNCLKTC 219 (767)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~~~~~~l~~~l~~~ 219 (767)
+..+.....++ ...+.+.++. ..-+|+||++...+...+..+...+..+
T Consensus 648 G~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g 697 (857)
T PRK10865 648 GAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDG 697 (857)
T ss_pred CCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhC
Confidence 22222111111 1112233322 2358999999877778888888877653
No 208
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.00 E-value=0.0015 Score=58.97 Aligned_cols=108 Identities=13% Similarity=0.125 Sum_probs=64.6
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccch-hhhhhhHHHHHHHHHHHhhCCCCCccch
Q 035555 100 FGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDV-KKILRKEYGIARAIIEALTYSSSNFVEF 178 (767)
Q Consensus 100 vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~~i~~~i~~~l~~~~~~~~~~ 178 (767)
||+...++++.+.+..-.. ....|.|+|..|+||+++|+.++..... ...|.. ..+...+
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~--------------~~~~~~~- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIV--------------IDCASLP- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC--------------CCHHCTC-
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE--------------echhhCc-
Confidence 4666667777666654322 3346899999999999999999875322 112211 0000011
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhhcC-CCCcEEEEEcCch
Q 035555 179 QSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTC-LHGSKILITTRKE 232 (767)
Q Consensus 179 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~ 232 (767)
.+.+... +.--|+++|+..-+......+...+... ....|+|.||+..
T Consensus 62 ---~~~l~~a---~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 62 ---AELLEQA---KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp ---HHHHHHC---TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred ---HHHHHHc---CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 1222222 4556789999877767777788777754 5678999999853
No 209
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.98 E-value=0.00097 Score=69.67 Aligned_cols=78 Identities=14% Similarity=0.079 Sum_probs=47.0
Q ss_pred CEEEEEEccCCChHHHHHHHHHcccchhhhhhh-------------HHHHHHHHHHHhhCCCCCcc-----ch-HHHHHH
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK-------------EYGIARAIIEALTYSSSNFV-----EF-QSLMQH 184 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-------------~~~i~~~i~~~l~~~~~~~~-----~~-~~~~~~ 184 (767)
-..++|+|++|+|||||++.+++..... +|+. +.++++.+...+-....... .. ....+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 3579999999999999999999963332 4543 56666666433322211111 11 111122
Q ss_pred HHHh-cCCCeEEEEEeCCC
Q 035555 185 IQKH-VAGKKLLLVLDDVW 202 (767)
Q Consensus 185 l~~~-l~~k~~LlVlDdv~ 202 (767)
.... -.+++.+|++|++.
T Consensus 247 Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHcCCCeEEEEEChh
Confidence 2222 25899999999994
No 210
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.97 E-value=0.0071 Score=67.64 Aligned_cols=44 Identities=30% Similarity=0.441 Sum_probs=36.1
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHc
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+++|.+..++.+...+... ...-|.|+|++|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999998877543 234578999999999999999975
No 211
>PRK06921 hypothetical protein; Provisional
Probab=96.96 E-value=0.0033 Score=63.48 Aligned_cols=96 Identities=24% Similarity=0.299 Sum_probs=51.1
Q ss_pred CEEEEEEccCCChHHHHHHHHHcccchh-h---hhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEe
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNNDDVK-K---ILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLD 199 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~~~~-~---~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlD 199 (767)
...+.++|..|+|||.||.++++....+ . .|-...++...+...+ +.....+.. + .+-=|||||
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~----------~~~~~~~~~-~-~~~dlLiID 184 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF----------DLLEAKLNR-M-KKVEVLFID 184 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH----------HHHHHHHHH-h-cCCCEEEEe
Confidence 4578999999999999999998842111 1 1211233333332221 111112222 2 234599999
Q ss_pred CCCC-----cChhhHHH--HHHhhhcC-CCCcEEEEEcCc
Q 035555 200 DVWN-----EDFYKWEQ--FYNCLKTC-LHGSKILITTRK 231 (767)
Q Consensus 200 dv~~-----~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 231 (767)
|+.. +....|.. +...+... ..+..+||||..
T Consensus 185 Dl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 185 DLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred ccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 9932 22234443 44444432 234458888874
No 212
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.96 E-value=0.01 Score=69.69 Aligned_cols=179 Identities=17% Similarity=0.127 Sum_probs=93.5
Q ss_pred CccccchhHHHHHHHHHhcCCCC-------CCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhh
Q 035555 97 SEIFGREKEKSELVNRLLCESSK-------EQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALT 169 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~ 169 (767)
.++.|.+..++.|.+.+.-+-.. +-...+-|.++|++|.|||++|+++++. ....|-.+. ..++....
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~fi~v~--~~~l~~~~- 527 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANFIAVR--GPEILSKW- 527 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCEEEEe--hHHHhhcc-
Confidence 45788888888887766421110 1123456889999999999999999984 222232100 00111110
Q ss_pred CCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCc--------Ch----hhHHHHHHhhhc--CCCCcEEEEEcCchhHH
Q 035555 170 YSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE--------DF----YKWEQFYNCLKT--CLHGSKILITTRKETVA 235 (767)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------~~----~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~ 235 (767)
.......+.......-...+.+|++|+++.- .. ....++...+.. ...+-.||.||...+..
T Consensus 528 ----vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~l 603 (733)
T TIGR01243 528 ----VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDIL 603 (733)
T ss_pred ----cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhC
Confidence 0111122222333333456799999998421 00 112223333432 12344455566554332
Q ss_pred h-hh----cCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCc
Q 035555 236 R-IM----GSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLP 289 (767)
Q Consensus 236 ~-~~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 289 (767)
. .+ .-...+.++..+.++-.++|..+.-+.. .....+ ...+++.+.|.-
T Consensus 604 d~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~-~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 604 DPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP-LAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC-CCccCC----HHHHHHHcCCCC
Confidence 1 11 1245788888888888888876542211 112222 345667777654
No 213
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.01 Score=63.99 Aligned_cols=97 Identities=20% Similarity=0.200 Sum_probs=62.6
Q ss_pred CccccchhHHHHHHHHHhcCCCC------CCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhC
Q 035555 97 SEIFGREKEKSELVNRLLCESSK------EQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTY 170 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~ 170 (767)
.++=|.++.+.++.+++..-... +-...+=|.+||++|.|||.||+++++...+ .|-.+ -.-+|+...
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v--Pf~~i--sApeivSGv-- 263 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV--PFLSI--SAPEIVSGV-- 263 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC--ceEee--cchhhhccc--
Confidence 45778999999988887653211 2235677899999999999999999995322 22110 001111111
Q ss_pred CCCCccchHHHHHHHHHhcCCCeEEEEEeCCC
Q 035555 171 SSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVW 202 (767)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 202 (767)
.....+.+.+...+....-++++++|+++
T Consensus 264 ---SGESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 264 ---SGESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred ---CcccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 12334455555666777889999999984
No 214
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.94 E-value=0.0022 Score=74.60 Aligned_cols=163 Identities=17% Similarity=0.180 Sum_probs=84.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhh-HHHHHHHHHHHhhCCC--
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK-EYGIARAIIEALTYSS-- 172 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~~i~~~i~~~l~~~~-- 172 (767)
+.+.+|.++.+++|.++|............++.++|++|+||||+|+.++.. ....|-. ...-.++. ..+.+..
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~~~i~~~~~~d~-~~i~g~~~~ 397 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKYVRMALGGVRDE-AEIRGHRRT 397 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCEEEEEcCCCCCH-HHhccchhc
Confidence 3458999999999998887422111224468999999999999999999863 2222211 00000000 0111100
Q ss_pred CCccchHHHHHHHHHhcCCCeEEEEEeCCCCcChhh----HHHHHHhhhcC--------------C-CCcEEEEEcCchh
Q 035555 173 SNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNEDFYK----WEQFYNCLKTC--------------L-HGSKILITTRKET 233 (767)
Q Consensus 173 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~----~~~l~~~l~~~--------------~-~gs~ilvTtR~~~ 233 (767)
........+...+... ....-+++||.++...... ...+...+... . ...-+|.|+....
T Consensus 398 ~~g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~ 476 (784)
T PRK10787 398 YIGSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMN 476 (784)
T ss_pred cCCCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCC
Confidence 0001112223333332 2234478899985432211 23444444321 0 2233344444332
Q ss_pred HHh-hhcCcceEecCCCChhHHHHHHHHhc
Q 035555 234 VAR-IMGSADIISVNVLSETECWLVFESLG 262 (767)
Q Consensus 234 v~~-~~~~~~~~~l~~L~~~~~~~l~~~~~ 262 (767)
+.. ..+....+++.+++.++-.++..++.
T Consensus 477 i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 477 IPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred CCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 221 22335678899999988888877664
No 215
>PRK09183 transposase/IS protein; Provisional
Probab=96.93 E-value=0.0024 Score=64.29 Aligned_cols=97 Identities=23% Similarity=0.241 Sum_probs=50.4
Q ss_pred EEEEEEccCCChHHHHHHHHHcccch---hhhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCC
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNNDDV---KKILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDV 201 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~~~~---~~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv 201 (767)
..+.|+|++|+|||+||.++...... .-.|-...++...+...... ..+...+...+ .+.-++|+||+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~--------~~~~~~~~~~~-~~~dlLiiDdl 173 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQ--------GRYKTTLQRGV-MAPRLLIIDEI 173 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHC--------CcHHHHHHHHh-cCCCEEEEccc
Confidence 46889999999999999998653111 11232223333333222111 01112222222 34469999999
Q ss_pred CCcChhhHH--HHHHhhhcC-CCCcEEEEEcCc
Q 035555 202 WNEDFYKWE--QFYNCLKTC-LHGSKILITTRK 231 (767)
Q Consensus 202 ~~~~~~~~~--~l~~~l~~~-~~gs~ilvTtR~ 231 (767)
.-.....+. .+...+... ..++ +|+||..
T Consensus 174 g~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 174 GYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred ccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 643222232 344444322 2355 8888874
No 216
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.019 Score=58.23 Aligned_cols=186 Identities=15% Similarity=0.128 Sum_probs=99.4
Q ss_pred cccchhHHHHHHHHHhcCCCC-------CCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCC
Q 035555 99 IFGREKEKSELVNRLLCESSK-------EQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYS 171 (767)
Q Consensus 99 ~vGr~~~~~~l~~~L~~~~~~-------~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~ 171 (767)
+=|-++.+++|.+...-+-.+ +=.+++=|.+||++|.|||-||++|+++ ....|=.+ +-.++.+..-
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtFIrv--vgSElVqKYi-- 226 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATFIRV--VGSELVQKYI-- 226 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceEEEe--ccHHHHHHHh--
Confidence 557788888888876543221 1235667889999999999999999994 33334220 0001111110
Q ss_pred CCCccchHHHHHHHHHhcC-CCeEEEEEeCCCC-----------cChhh---HHHHHHhhhcC--CCCcEEEEEcCchhH
Q 035555 172 SSNFVEFQSLMQHIQKHVA-GKKLLLVLDDVWN-----------EDFYK---WEQFYNCLKTC--LHGSKILITTRKETV 234 (767)
Q Consensus 172 ~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~-----------~~~~~---~~~l~~~l~~~--~~gs~ilvTtR~~~v 234 (767)
-+...+++.+...-+ ..+..|++|.++. .+.+. +-+++..+..+ ...-+||..|...++
T Consensus 227 ----GEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~ 302 (406)
T COG1222 227 ----GEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDI 302 (406)
T ss_pred ----ccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccc
Confidence 112334444444443 4678899998732 12222 22344444333 234578887776544
Q ss_pred Hhhh---c--CcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCc----chHHHHHhHH
Q 035555 235 ARIM---G--SADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLP----LVAKTIASLL 299 (767)
Q Consensus 235 ~~~~---~--~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P----Lai~~~~~~l 299 (767)
.... . -...++++.-+.+.-.++|.-++.. ......-+ .+.+++.|.|.- -|+.+=|+++
T Consensus 303 LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk-M~l~~dvd----~e~la~~~~g~sGAdlkaictEAGm~ 371 (406)
T COG1222 303 LDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK-MNLADDVD----LELLARLTEGFSGADLKAICTEAGMF 371 (406)
T ss_pred cChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh-ccCccCcC----HHHHHHhcCCCchHHHHHHHHHHhHH
Confidence 3221 1 1567777744555556667655422 22222333 444666666654 3445555554
No 217
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.89 E-value=0.0011 Score=66.38 Aligned_cols=77 Identities=25% Similarity=0.233 Sum_probs=45.2
Q ss_pred EEEEEEccCCChHHHHHHHHHcccc---hhhhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCC
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNNDD---VKKILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDV 201 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~~~---~~~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv 201 (767)
.-+.++|.+|+|||.||.++.+..- ++-.|-...++...+...... ......+.+.+. +-=||||||+
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~----~~~~~~l~~~l~-----~~dlLIiDDl 176 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDE----GRLEEKLLRELK-----KVDLLIIDDI 176 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhc----CchHHHHHHHhh-----cCCEEEEecc
Confidence 4588999999999999999988532 111233355666665555432 111122222221 2248999999
Q ss_pred CCcChhhHH
Q 035555 202 WNEDFYKWE 210 (767)
Q Consensus 202 ~~~~~~~~~ 210 (767)
--.....|.
T Consensus 177 G~~~~~~~~ 185 (254)
T COG1484 177 GYEPFSQEE 185 (254)
T ss_pred cCccCCHHH
Confidence 654444444
No 218
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.014 Score=61.84 Aligned_cols=152 Identities=20% Similarity=0.159 Sum_probs=86.7
Q ss_pred CCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeC
Q 035555 121 QKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDD 200 (767)
Q Consensus 121 ~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDd 200 (767)
..+...|.+.|++|+|||+||..++... .|..++-+-. +.+- ...+......+.....+..+..--.||+||
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~S----~FPFvKiiSp---e~mi-G~sEsaKc~~i~k~F~DAYkS~lsiivvDd 606 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALSS----DFPFVKIISP---EDMI-GLSESAKCAHIKKIFEDAYKSPLSIIVVDD 606 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhhc----CCCeEEEeCh---HHcc-CccHHHHHHHHHHHHHHhhcCcceEEEEcc
Confidence 3467788999999999999999998742 2322000000 0000 011122334445556667777788999999
Q ss_pred CCCc----------ChhhHHHHHHhhhcC---CCCcEEEEEcCchhHHhhhcC----cceEecCCCCh-hHHHHHHHHhc
Q 035555 201 VWNE----------DFYKWEQFYNCLKTC---LHGSKILITTRKETVARIMGS----ADIISVNVLSE-TECWLVFESLG 262 (767)
Q Consensus 201 v~~~----------~~~~~~~l~~~l~~~---~~gs~ilvTtR~~~v~~~~~~----~~~~~l~~L~~-~~~~~l~~~~~ 262 (767)
+..- .......+...+... ++.--|+-||....+.+.|+- ...|.++.++. ++..+.++..-
T Consensus 607 iErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n 686 (744)
T KOG0741|consen 607 IERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEELN 686 (744)
T ss_pred hhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHcc
Confidence 8321 111222233344332 233335557777788777765 45788999987 77777777643
Q ss_pred CCCCCCcchhhHHHHHHHHHhhc
Q 035555 263 FSGKSMEERENLEKIGREIIRKC 285 (767)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~i~~~~ 285 (767)
. ......+.++++...+|
T Consensus 687 ~-----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 687 I-----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred C-----CCcchhHHHHHHHhccc
Confidence 1 12234455566666666
No 219
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.88 E-value=0.031 Score=58.87 Aligned_cols=43 Identities=23% Similarity=0.326 Sum_probs=34.1
Q ss_pred chhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 102 REKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 102 r~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
|+...+.|.+.+.... .....+|+|.|.=|+|||++.+.+.+.
T Consensus 1 ~~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred ChHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4556778888887653 147789999999999999999888653
No 220
>PRK04132 replication factor C small subunit; Provisional
Probab=96.88 E-value=0.01 Score=68.71 Aligned_cols=147 Identities=10% Similarity=0.020 Sum_probs=88.4
Q ss_pred cCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhc-----C-CCeEEEEEeCCCCcC
Q 035555 132 MGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHV-----A-GKKLLLVLDDVWNED 205 (767)
Q Consensus 132 ~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~-~k~~LlVlDdv~~~~ 205 (767)
|.++||||+|.+++++.- .+.++. ..+..+.......+++.+.+.+.. . .+.-++|+|+++..+
T Consensus 574 Ph~lGKTT~A~ala~~l~-g~~~~~---------~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt 643 (846)
T PRK04132 574 PTVLHNTTAALALARELF-GENWRH---------NFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALT 643 (846)
T ss_pred CCcccHHHHHHHHHHhhh-cccccC---------eEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCC
Confidence 778999999999998520 111100 000001111112223333332221 1 245799999999888
Q ss_pred hhhHHHHHHhhhcCCCCcEEEEEcCc-hhHH-hhhcCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHh
Q 035555 206 FYKWEQFYNCLKTCLHGSKILITTRK-ETVA-RIMGSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIR 283 (767)
Q Consensus 206 ~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~-~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 283 (767)
......++..+......+++|++|.+ ..+. ...+.+..+.+.+++.++....+...+-..+.... .+....|++
T Consensus 644 ~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~----~e~L~~Ia~ 719 (846)
T PRK04132 644 QDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT----EEGLQAILY 719 (846)
T ss_pred HHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHH
Confidence 77888888888865556677666655 3332 33344779999999999988887765432221111 335788999
Q ss_pred hcCCCcchH
Q 035555 284 KCKGLPLVA 292 (767)
Q Consensus 284 ~~~g~PLai 292 (767)
.++|.+..+
T Consensus 720 ~s~GDlR~A 728 (846)
T PRK04132 720 IAEGDMRRA 728 (846)
T ss_pred HcCCCHHHH
Confidence 999988444
No 221
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.87 E-value=0.0037 Score=73.51 Aligned_cols=51 Identities=24% Similarity=0.387 Sum_probs=38.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.+++|.++.+++|.+++......+.....++.++|++|+|||++|+.+.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999988765321111223458999999999999999999884
No 222
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.83 E-value=0.0029 Score=74.95 Aligned_cols=121 Identities=14% Similarity=0.182 Sum_probs=68.1
Q ss_pred CccccchhHHHHHHHHHhcCCC---CCCCCCEEEEEEccCCChHHHHHHHHHccc----chhhhhhhHHHH-HHHHHHHh
Q 035555 97 SEIFGREKEKSELVNRLLCESS---KEQKGPCVISLVGMGGIGKTTLAQFAYNND----DVKKILRKEYGI-ARAIIEAL 168 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~~i-~~~i~~~l 168 (767)
..++|.++.++.+...+..... ..+.+...+.++|+.|+|||+||+.+.+.. .---.|+...-. ...+.. +
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~-l 587 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSK-L 587 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHH-h
Confidence 5689999999999888864321 112234567799999999999998887631 000011110000 001111 1
Q ss_pred hCCCCCccchHHHHHHHHHhcCCCe-EEEEEeCCCCcChhhHHHHHHhhhcC
Q 035555 169 TYSSSNFVEFQSLMQHIQKHVAGKK-LLLVLDDVWNEDFYKWEQFYNCLKTC 219 (767)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~ 219 (767)
.+..+.....++ ...+.+.++.++ .+++||++...+...+..+...+..+
T Consensus 588 ~g~~~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g 638 (821)
T CHL00095 588 IGSPPGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDG 638 (821)
T ss_pred cCCCCcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccC
Confidence 122221111111 112334444444 58999999888888888888887764
No 223
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.83 E-value=0.0046 Score=71.50 Aligned_cols=120 Identities=16% Similarity=0.195 Sum_probs=68.6
Q ss_pred CccccchhHHHHHHHHHhcCCC---CCCCCCEEEEEEccCCChHHHHHHHHHcccchhhh---hhhHHHHHHHHHHHhhC
Q 035555 97 SEIFGREKEKSELVNRLLCESS---KEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKI---LRKEYGIARAIIEALTY 170 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~---F~~~~~i~~~i~~~l~~ 170 (767)
..++|.++.++.|.+.+..... ..+.....+.++|+.|+|||++|+.+.... ... |+............+-+
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--GIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--CCCcEEeechhhcccccHHHHcC
Confidence 3579999999999998874211 012345678999999999999999987742 111 12211111111222222
Q ss_pred CCCCccchHHHHHHHHHhcC-CCeEEEEEeCCCCcChhhHHHHHHhhhcC
Q 035555 171 SSSNFVEFQSLMQHIQKHVA-GKKLLLVLDDVWNEDFYKWEQFYNCLKTC 219 (767)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~l~~~ 219 (767)
..+.....+ ....+.+.++ ....+++||++.......+..+...+..+
T Consensus 536 ~~~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G 584 (758)
T PRK11034 536 APPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNG 584 (758)
T ss_pred CCCCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcC
Confidence 222111100 0112222333 23469999999887777788888777643
No 224
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.82 E-value=0.00015 Score=81.21 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=24.3
Q ss_pred ccceEeeccCccccCCC--cCCCCCCCCcEEEecCCCchhHHhhc
Q 035555 706 RLSCLIIFGCFKLKALP--DLLLQKTTLQKLHIWGGCPIFRERYR 748 (767)
Q Consensus 706 ~L~~L~l~~c~~l~~lp--~~~~~l~sL~~L~l~~~c~~l~~~~~ 748 (767)
.|+.|+++.|...+.-- .....+..+..+.+ .+|+.+.....
T Consensus 402 ~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~-~~~~~~~~~~~ 445 (482)
T KOG1947|consen 402 SLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDL-SGCRVITLKSL 445 (482)
T ss_pred ccceEecccCccccccchHHHhhhhhccccCCc-cCcccccchhh
Confidence 37788888876554211 10011566777777 77777665543
No 225
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.80 E-value=0.013 Score=53.97 Aligned_cols=116 Identities=20% Similarity=0.293 Sum_probs=71.6
Q ss_pred CEEEEEEccCCChHHHHHHHHHcccc---------------------------hhhhhhh--------------------
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNNDD---------------------------VKKILRK-------------------- 156 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~~---------------------------~~~~F~~-------------------- 156 (767)
-..+.|+|++|.||||+.+.+|...+ +.-.|.+
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~ 107 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI 107 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc
Confidence 45899999999999999999987421 0111211
Q ss_pred ---HHHHHHHHHHHhh---CC------CCCccchHHHHHHHHHhcCCCeEEEEEeCCC-C-cChhhHHHHHHhhhcCCCC
Q 035555 157 ---EYGIARAIIEALT---YS------SSNFVEFQSLMQHIQKHVAGKKLLLVLDDVW-N-EDFYKWEQFYNCLKTCLHG 222 (767)
Q Consensus 157 ---~~~i~~~i~~~l~---~~------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~-~-~~~~~~~~l~~~l~~~~~g 222 (767)
..++.+...+.+. .. +......++-.-.|.+.+-+++-+|+-|.-- + +....|+-+.-+-.-+..|
T Consensus 108 G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~G 187 (223)
T COG2884 108 GKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLG 187 (223)
T ss_pred CCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcC
Confidence 3333333333332 11 2223444555556778888889999988641 1 1234565544444445679
Q ss_pred cEEEEEcCchhHHhhhc
Q 035555 223 SKILITTRKETVARIMG 239 (767)
Q Consensus 223 s~ilvTtR~~~v~~~~~ 239 (767)
+.|+++|-+.++...+.
T Consensus 188 tTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 188 TTVLMATHDLELVNRMR 204 (223)
T ss_pred cEEEEEeccHHHHHhcc
Confidence 99999999988776653
No 226
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.73 E-value=0.0011 Score=58.44 Aligned_cols=22 Identities=41% Similarity=0.462 Sum_probs=20.4
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
+|+|.|++|+||||+|+++.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999884
No 227
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.0086 Score=67.96 Aligned_cols=157 Identities=17% Similarity=0.162 Sum_probs=83.8
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHccc---chhhhhhhHHHHHHHHHHHhhCCCC
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNND---DVKKILRKEYGIARAIIEALTYSSS 173 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~---~~~~~F~~~~~i~~~i~~~l~~~~~ 173 (767)
..++||++|+.++++.|..... +.+ .++|.+|||||++|.-++... .+-.......-+.-++.....+...
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K----NNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGaky 243 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK----NNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKY 243 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC----CCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccc
Confidence 3489999999999999987643 223 368999999999986655420 1111111100000112222222211
Q ss_pred CccchHHHHHHHHHhcC-CCeEEEEEeCCCCc----C----hhhHHHHHHhhhcCCCCcEEEEEcCchhHHhhh------
Q 035555 174 NFVEFQSLMQHIQKHVA-GKKLLLVLDDVWNE----D----FYKWEQFYNCLKTCLHGSKILITTRKETVARIM------ 238 (767)
Q Consensus 174 ~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~----~----~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~------ 238 (767)
--+.++....+.+.++ .++..|++|.+..- . ..+-..+..+--..+.--.|=-||-+ +.....
T Consensus 244 -RGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~-EYRk~iEKD~AL 321 (786)
T COG0542 244 -RGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLD-EYRKYIEKDAAL 321 (786)
T ss_pred -cCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHH-HHHHHhhhchHH
Confidence 1234444444444443 45899999998431 1 11222233332222222234455544 222221
Q ss_pred -cCcceEecCCCChhHHHHHHHHh
Q 035555 239 -GSADIISVNVLSETECWLVFESL 261 (767)
Q Consensus 239 -~~~~~~~l~~L~~~~~~~l~~~~ 261 (767)
.....+.+..-+.+++..++.-.
T Consensus 322 ~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 322 ERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HhcCceeeCCCCCHHHHHHHHHHH
Confidence 22568888999999998888643
No 228
>PRK06696 uridine kinase; Validated
Probab=96.71 E-value=0.0021 Score=63.49 Aligned_cols=44 Identities=25% Similarity=0.332 Sum_probs=36.3
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 101 GREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 101 Gr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.|++.+++|.+.+.... .....+|+|.|.+|+||||+|+.+.+.
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 47788889999887532 236789999999999999999999873
No 229
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.71 E-value=0.0043 Score=60.70 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=19.8
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
-.++|+|..|+|||||+..+..+
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 36889999999999999888763
No 230
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0043 Score=65.63 Aligned_cols=56 Identities=30% Similarity=0.284 Sum_probs=41.3
Q ss_pred Cccccchh---HHHHHHHHHhcCCCC---CCCCCEEEEEEccCCChHHHHHHHHHcccchhh
Q 035555 97 SEIFGREK---EKSELVNRLLCESSK---EQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKK 152 (767)
Q Consensus 97 ~~~vGr~~---~~~~l~~~L~~~~~~---~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~ 152 (767)
.++-|-|+ |+++|++.|.++... ++.-++=|.++|++|.|||-||++|+-...+-.
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPF 365 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPF 365 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCe
Confidence 45667765 678888888765421 233456789999999999999999998755544
No 231
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.70 E-value=0.023 Score=62.31 Aligned_cols=157 Identities=20% Similarity=0.095 Sum_probs=80.5
Q ss_pred CccccchhHHHHHHHHHhc---C-CCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhh-HHHHHHHHHHHhhCC
Q 035555 97 SEIFGREKEKSELVNRLLC---E-SSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK-EYGIARAIIEALTYS 171 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~---~-~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~~i~~~i~~~l~~~ 171 (767)
.++.|.+..++.+.+.... . ...+-...+-|.++|++|.|||.+|+++.+..... .|.. ...+. . .
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~-~~~l~~~~l~----~----~ 298 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP-LLRLDVGKLF----G----G 298 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC-EEEEEhHHhc----c----c
Confidence 4577887777666543211 0 00012345678999999999999999998853211 0111 00000 0 0
Q ss_pred CCCccchHHHHHHHHHhcCCCeEEEEEeCCCCc--------ChhhH----HHHHHhhhcCCCCcEEEEEcCchhH-Hhhh
Q 035555 172 SSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE--------DFYKW----EQFYNCLKTCLHGSKILITTRKETV-ARIM 238 (767)
Q Consensus 172 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------~~~~~----~~l~~~l~~~~~gs~ilvTtR~~~v-~~~~ 238 (767)
. .......+.+.+...-...+++|++|+++.. +...- ..+...+.....+--||.||.+... ...+
T Consensus 299 ~-vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~al 377 (489)
T CHL00195 299 I-VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEI 377 (489)
T ss_pred c-cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHH
Confidence 0 0011122222233333357899999998521 10011 1122223333334445567765321 1111
Q ss_pred ----cCcceEecCCCChhHHHHHHHHhcC
Q 035555 239 ----GSADIISVNVLSETECWLVFESLGF 263 (767)
Q Consensus 239 ----~~~~~~~l~~L~~~~~~~l~~~~~~ 263 (767)
.-...+.++.-+.++-.++|..+..
T Consensus 378 lR~GRFD~~i~v~lP~~~eR~~Il~~~l~ 406 (489)
T CHL00195 378 LRKGRFDEIFFLDLPSLEEREKIFKIHLQ 406 (489)
T ss_pred hCCCcCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 1245677887788888888887753
No 232
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.70 E-value=0.0035 Score=65.11 Aligned_cols=99 Identities=21% Similarity=0.266 Sum_probs=52.4
Q ss_pred EEEEEEccCCChHHHHHHHHHcccchh---hhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCC
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNNDDVK---KILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDV 201 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv 201 (767)
..+.++|..|+|||.||.++++...-+ -.|-...++...+...-. ....+.....+.+ . .-=||||||+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~---~~~~~~~~~~~~l----~-~~DLLIIDDl 255 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRF---NNDKELEEVYDLL----I-NCDLLIIDDL 255 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHh---ccchhHHHHHHHh----c-cCCEEEEecc
Confidence 569999999999999999998842111 112223344333332111 1111111111222 2 2248999999
Q ss_pred CCcChhhHH--HHHHhhhcC-CCCcEEEEEcCc
Q 035555 202 WNEDFYKWE--QFYNCLKTC-LHGSKILITTRK 231 (767)
Q Consensus 202 ~~~~~~~~~--~l~~~l~~~-~~gs~ilvTtR~ 231 (767)
.......|. .+...+... ..+..+||||..
T Consensus 256 G~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 256 GTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 654333343 344444432 234568888874
No 233
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.014 Score=61.05 Aligned_cols=105 Identities=12% Similarity=0.072 Sum_probs=52.5
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcccchh---------hhhhh-HHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCC-
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNNDDVK---------KILRK-EYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAG- 191 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~~~~~---------~~F~~-~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~- 191 (767)
..++|+++|++|+||||++..++...... ..|.. ..+-++...+..+.+.....+...+.+.+...-..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 45799999999999999998886532100 01110 11122222233332221223445555555443221
Q ss_pred CeEEEEEeCCCCc--ChhhHHHHHHhhhcCCCCcEEEE
Q 035555 192 KKLLLVLDDVWNE--DFYKWEQFYNCLKTCLHGSKILI 227 (767)
Q Consensus 192 k~~LlVlDdv~~~--~~~~~~~l~~~l~~~~~gs~ilv 227 (767)
+.=++++|-.-.. +......+...+....+...+||
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLV 357 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLT 357 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEE
Confidence 2347788877432 23345555555544333333444
No 234
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.67 E-value=0.00026 Score=79.33 Aligned_cols=60 Identities=33% Similarity=0.229 Sum_probs=33.7
Q ss_pred CCcccEEeecCCccccc--cchhhcCCCCCcEEEccCC-ccccccC----cccccCcCCcEeeCCCC
Q 035555 465 LIHLKYLNLSSQKKIKR--LPETLCELYNLECLAISFC-TNLRQLP----QGIGKLRKLMYLDNDYT 524 (767)
Q Consensus 465 l~~L~~L~L~~~~~~~~--lp~~~~~l~~L~~L~L~~~-~~l~~lp----~~~~~l~~L~~L~l~~~ 524 (767)
++.|+.|.+.++..+.. +-.....+++|+.|++++| ......+ .....+++|+.|+++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 253 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGC 253 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhh
Confidence 56777777777665554 3344556777777777763 2222222 12234566666666665
No 235
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.66 E-value=0.0051 Score=57.33 Aligned_cols=120 Identities=16% Similarity=0.123 Sum_probs=65.3
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccc-hhhhhhh------HHHHHHHHHHHh-hC
Q 035555 99 IFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDD-VKKILRK------EYGIARAIIEAL-TY 170 (767)
Q Consensus 99 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~------~~~i~~~i~~~l-~~ 170 (767)
+||.+..+.++.+.+..-.. ...-|.|+|..|+||+.+|+.+++... -...|-. ..+.. -..+ +.
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~---e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELL---ESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHH---HHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchh---hhhhhcc
Confidence 47888888888887765443 224577999999999999999998522 1222321 11111 1122 21
Q ss_pred CCCC----ccchHHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCC-----------CCcEEEEEcCc
Q 035555 171 SSSN----FVEFQSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCL-----------HGSKILITTRK 231 (767)
Q Consensus 171 ~~~~----~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 231 (767)
.... ..... -.+... ..=-|+||++.......-..+...+..+. ...|||.||..
T Consensus 74 ~~~~~~~~~~~~~---G~l~~A---~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 74 EKGAFTGARSDKK---GLLEQA---NGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp CSSSSTTTSSEBE---HHHHHT---TTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred ccccccccccccC---Cceeec---cceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 1111 01111 112222 23368899998776666666777776431 24678888874
No 236
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.66 E-value=0.023 Score=59.22 Aligned_cols=71 Identities=10% Similarity=0.087 Sum_probs=49.6
Q ss_pred CCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCch-hHHh-hhcCcceEecCCCChhHHHHHHHHh
Q 035555 191 GKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKE-TVAR-IMGSADIISVNVLSETECWLVFESL 261 (767)
Q Consensus 191 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~-~~~~~~~~~l~~L~~~~~~~l~~~~ 261 (767)
+++-++|+|++...+...-..+...+.....++.+|++|.+. .+.. .......+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 344456678888777777777888777655566666677663 3332 2344678999999999999888654
No 237
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.62 E-value=0.017 Score=55.81 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=41.2
Q ss_pred cchHHHHHHHHHhcCCCeEEEEEeCCC-CcChhhHHHHHHhhhcC--CCCcEEEEEcCchhHHhhhc
Q 035555 176 VEFQSLMQHIQKHVAGKKLLLVLDDVW-NEDFYKWEQFYNCLKTC--LHGSKILITTRKETVARIMG 239 (767)
Q Consensus 176 ~~~~~~~~~l~~~l~~k~~LlVlDdv~-~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~~~ 239 (767)
...++-.-.+.+.+-..+-+|+-|+-- +-|...-..+...+... ..|..||+.|-+..++..+.
T Consensus 144 SGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 144 SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 344455556778888888899999741 22333334455555433 34777999999999887654
No 238
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.61 E-value=0.00015 Score=62.42 Aligned_cols=82 Identities=20% Similarity=0.312 Sum_probs=59.8
Q ss_pred cccccCCcccEEeecCCccccccchhhc-CCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCcccccccCcCCc
Q 035555 460 TNIEKLIHLKYLNLSSQKKIKRLPETLC-ELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPVGIRELI 538 (767)
Q Consensus 460 ~~~~~l~~L~~L~L~~~~~~~~lp~~~~-~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~ 538 (767)
-.+....+|+..+|++|. ++.+|+.+. +.+.+.+|++.+|. +..+|.++..|+.|+.|+++.| .+...|..+..|.
T Consensus 47 y~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~ 123 (177)
T KOG4579|consen 47 YMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLI 123 (177)
T ss_pred HHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccC-ccccchHHHHHHH
Confidence 445666778888888888 777777666 45588888888877 8888888888888888888877 5566666665555
Q ss_pred CCcccc
Q 035555 539 RLRRVR 544 (767)
Q Consensus 539 ~L~~L~ 544 (767)
+|-.|.
T Consensus 124 ~l~~Ld 129 (177)
T KOG4579|consen 124 KLDMLD 129 (177)
T ss_pred hHHHhc
Confidence 555543
No 239
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.61 E-value=0.0046 Score=56.25 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
+|.+.|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999853
No 240
>PRK07261 topology modulation protein; Provisional
Probab=96.60 E-value=0.0021 Score=60.46 Aligned_cols=65 Identities=17% Similarity=0.223 Sum_probs=40.0
Q ss_pred EEEEEccCCChHHHHHHHHHcccchhh-hhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCC
Q 035555 126 VISLVGMGGIGKTTLAQFAYNNDDVKK-ILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVW 202 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 202 (767)
.|.|+|++|+||||||+++.....+.. +.|... ..+.....+.++....+...+.+.+ .|+|+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~--wIidg~~ 67 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH----------FQPNWQERDDDDMIADISNFLLKHD--WIIDGNY 67 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE----------eccccccCCHHHHHHHHHHHHhCCC--EEEcCcc
Confidence 489999999999999999876422110 111100 0111122345567777777787766 6788873
No 241
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.60 E-value=0.00082 Score=76.79 Aligned_cols=15 Identities=27% Similarity=0.217 Sum_probs=6.9
Q ss_pred hhhcCCCCCCeeeeC
Q 035555 560 SLKRLILLRECRIHG 574 (767)
Q Consensus 560 ~l~~l~~L~~L~i~~ 574 (767)
.+.++++|..|+|++
T Consensus 168 lc~sFpNL~sLDIS~ 182 (699)
T KOG3665|consen 168 LCASFPNLRSLDISG 182 (699)
T ss_pred HhhccCccceeecCC
Confidence 334444444444444
No 242
>PHA02244 ATPase-like protein
Probab=96.58 E-value=0.0089 Score=61.97 Aligned_cols=99 Identities=13% Similarity=0.057 Sum_probs=51.0
Q ss_pred EEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCcC
Q 035555 126 VISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNED 205 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~ 205 (767)
-|.|+|++|+|||+||++++.. ....|-.+..+... .. +.+.......+. ...+...+ .+--+++||++....
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~--lg~pfv~In~l~d~-~~-L~G~i~~~g~~~--dgpLl~A~-~~GgvLiLDEId~a~ 193 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA--LDLDFYFMNAIMDE-FE-LKGFIDANGKFH--ETPFYEAF-KKGGLFFIDEIDASI 193 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--hCCCEEEEecChHH-Hh-hccccccccccc--chHHHHHh-hcCCEEEEeCcCcCC
Confidence 4788999999999999999874 22222211111110 00 111000000110 00111222 234699999997655
Q ss_pred hhhHHHHHHhhhc-----------CCCCcEEEEEcCc
Q 035555 206 FYKWEQFYNCLKT-----------CLHGSKILITTRK 231 (767)
Q Consensus 206 ~~~~~~l~~~l~~-----------~~~gs~ilvTtR~ 231 (767)
......+...+.. ..++.++|+|+..
T Consensus 194 p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~ 230 (383)
T PHA02244 194 PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCC
Confidence 5555555555531 1356788888875
No 243
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.021 Score=56.86 Aligned_cols=72 Identities=21% Similarity=0.241 Sum_probs=43.5
Q ss_pred CEEEEEEccCCChHHHHHHHHHcccchhh--hhhh-------HHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeE
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNNDDVKK--ILRK-------EYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKL 194 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~-------~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 194 (767)
.|+|.++|++|.|||+|.++.+..-.++- .|.. ...+.... +++ ...-...+.++|++.++++..
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKW---FsE---SgKlV~kmF~kI~ELv~d~~~ 250 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKW---FSE---SGKLVAKMFQKIQELVEDRGN 250 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHH---Hhh---hhhHHHHHHHHHHHHHhCCCc
Confidence 58999999999999999999998654432 1111 11122111 111 113345556667777766543
Q ss_pred --EEEEeCC
Q 035555 195 --LLVLDDV 201 (767)
Q Consensus 195 --LlVlDdv 201 (767)
++.+|.|
T Consensus 251 lVfvLIDEV 259 (423)
T KOG0744|consen 251 LVFVLIDEV 259 (423)
T ss_pred EEEEEeHHH
Confidence 4567888
No 244
>PTZ00494 tuzin-like protein; Provisional
Probab=96.56 E-value=0.24 Score=52.06 Aligned_cols=169 Identities=15% Similarity=0.166 Sum_probs=103.9
Q ss_pred CCCCCCCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhh---HHHHHHHHHH
Q 035555 90 SISSIDESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK---EYGIARAIIE 166 (767)
Q Consensus 90 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~---~~~i~~~i~~ 166 (767)
+..+..+..+|.|+++-..+.+.|.... ...++++.+.|.-|.||++|.+.......+-..|-. ..+-++.+.+
T Consensus 364 ~~a~a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~~paV~VDVRg~EDtLrsVVK 440 (664)
T PTZ00494 364 MLAAAAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEGVALVHVDVGGTEDTLRSVVR 440 (664)
T ss_pred cccccccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcCCCeEEEEecCCcchHHHHHH
Confidence 3445567789999999888888887654 358899999999999999999988876554444432 5566888888
Q ss_pred HhhCCCCCcc-c-hH---HHHHHHHHhcCCCeEEEEEeCCCCcCh-hhHHHHHHhhhcCCCCcEEEEEcCchhHHhh---
Q 035555 167 ALTYSSSNFV-E-FQ---SLMQHIQKHVAGKKLLLVLDDVWNEDF-YKWEQFYNCLKTCLHGSKILITTRKETVARI--- 237 (767)
Q Consensus 167 ~l~~~~~~~~-~-~~---~~~~~l~~~l~~k~~LlVlDdv~~~~~-~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~--- 237 (767)
.++.+..+.. | ++ +...+-.....++.-+||+-==...+. -.+.+. ..|.....-|+|++----+.+...
T Consensus 441 ALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESLT~~n~~ 519 (664)
T PTZ00494 441 ALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKALTPLNVS 519 (664)
T ss_pred HhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhhchhhcc
Confidence 8887544321 1 11 122222233456666777642111111 112222 223333456788765443332211
Q ss_pred hcCcceEecCCCChhHHHHHHHHhc
Q 035555 238 MGSADIISVNVLSETECWLVFESLG 262 (767)
Q Consensus 238 ~~~~~~~~l~~L~~~~~~~l~~~~~ 262 (767)
...-..|-+++++.++|.++-.+..
T Consensus 520 LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 520 SRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred CccceeEecCCcCHHHHHHHHhccc
Confidence 1224688999999999999877653
No 245
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.56 E-value=0.0017 Score=70.57 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=40.1
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHc
Q 035555 98 EIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
+++|.++.+++|++.|.....+.....+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999999433222233567999999999999999999876
No 246
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.55 E-value=0.014 Score=61.45 Aligned_cols=145 Identities=13% Similarity=0.138 Sum_probs=81.5
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhh--h----HHHHHHHHHHHh---
Q 035555 98 EIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILR--K----EYGIARAIIEAL--- 168 (767)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~----~~~i~~~i~~~l--- 168 (767)
.++|-+....++..+...... ....+.++|+.|+||||+|.++.+. +-.... . .......+...-
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~----~~halL~~Gp~G~Gktt~a~~lA~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~d 75 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR----LPHALLFYGPPGVGKTTAALALAKE--LLCENPTGLLPCGHCRSCKLIPAGNHPD 75 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC----CCceeeeeCCCCCCHHHHHHHHHHH--HhCCCcccCCcccchhhhhHHhhcCCCc
Confidence 467778888888888875421 3345999999999999999988774 110000 0 000000000000
Q ss_pred --hCCCCCccc---hHHHHHHHHHhc-----CCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCch-hHHh-
Q 035555 169 --TYSSSNFVE---FQSLMQHIQKHV-----AGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKE-TVAR- 236 (767)
Q Consensus 169 --~~~~~~~~~---~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~- 236 (767)
......... ..+.++.+.+.. .++.-++++|+++......-..++..+......+++|++|.+. .+..
T Consensus 76 ~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~t 155 (325)
T COG0470 76 FLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPT 155 (325)
T ss_pred eEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccch
Confidence 000111111 122222333222 2467799999998776666666777777777788888888742 2222
Q ss_pred hhcCcceEecCC
Q 035555 237 IMGSADIISVNV 248 (767)
Q Consensus 237 ~~~~~~~~~l~~ 248 (767)
....+..+.+.+
T Consensus 156 I~SRc~~i~f~~ 167 (325)
T COG0470 156 IRSRCQRIRFKP 167 (325)
T ss_pred hhhcceeeecCC
Confidence 223355666666
No 247
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.54 E-value=0.0001 Score=80.27 Aligned_cols=60 Identities=32% Similarity=0.469 Sum_probs=30.5
Q ss_pred ccccCCcccEEeecCCccccccchh-hcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCC
Q 035555 461 NIEKLIHLKYLNLSSQKKIKRLPET-LCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYT 524 (767)
Q Consensus 461 ~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~ 524 (767)
.+..|++|+.|||++|. +..+|.. ...|. |+.|.+++|. ++.+- ++.+|++|+.||+++|
T Consensus 204 ~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~-l~tL~-gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 204 NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNA-LTTLR-GIENLKSLYGLDLSYN 264 (1096)
T ss_pred HHHhcccccccccccch-hccccccchhhhh-heeeeecccH-HHhhh-hHHhhhhhhccchhHh
Confidence 44555555555555555 4444431 12232 5555555554 44432 4555555566665555
No 248
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0024 Score=69.96 Aligned_cols=52 Identities=19% Similarity=0.347 Sum_probs=43.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
+.+.+|.++.+++|.+.+--..-.++.+-.++..+|++|||||.+|+.|++.
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A 461 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA 461 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH
Confidence 4457999999999999986544334557789999999999999999999873
No 249
>PRK06762 hypothetical protein; Provisional
Probab=96.49 E-value=0.046 Score=51.10 Aligned_cols=24 Identities=33% Similarity=0.435 Sum_probs=21.4
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..+|.|.|++|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 250
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.002 Score=70.95 Aligned_cols=163 Identities=18% Similarity=0.210 Sum_probs=87.9
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhh-HHHHHHHHHHHhhCC--C
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK-EYGIARAIIEALTYS--S 172 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~~i~~~i~~~l~~~--~ 172 (767)
+.+.+|-++..++|++.|.-..-.....-.++.+||++|+|||.|++.|++. ....|-. ...=.++-++ +.+. .
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~a--l~RkfvR~sLGGvrDEAE-IRGHRRT 398 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKA--LGRKFVRISLGGVRDEAE-IRGHRRT 398 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHH--hCCCEEEEecCccccHHH-hcccccc
Confidence 4557999999999999986543222335579999999999999999999873 3333321 0000000000 0110 0
Q ss_pred CCccchHHHHHHHHHhcCCCeEEEEEeCCCCcCh----hhHHHHHHhhhcCC-------------CCc-EEEEEcCch-h
Q 035555 173 SNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNEDF----YKWEQFYNCLKTCL-------------HGS-KILITTRKE-T 233 (767)
Q Consensus 173 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~l~~~l~~~~-------------~gs-~ilvTtR~~-~ 233 (767)
.-..-...+.+.+.+ .+.+.-+++||.++-... +--..++..|...- .=| .+.|||-+. +
T Consensus 399 YIGamPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~ 477 (782)
T COG0466 399 YIGAMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLD 477 (782)
T ss_pred ccccCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccc
Confidence 000111222222222 245677899999843210 00112222222110 112 345566552 1
Q ss_pred -H-HhhhcCcceEecCCCChhHHHHHHHHhc
Q 035555 234 -V-ARIMGSADIISVNVLSETECWLVFESLG 262 (767)
Q Consensus 234 -v-~~~~~~~~~~~l~~L~~~~~~~l~~~~~ 262 (767)
+ +..+....++++.+-+++|-.++-+++.
T Consensus 478 tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 478 TIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred cCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 2 3344557889999999999888777665
No 251
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.47 E-value=0.024 Score=54.39 Aligned_cols=24 Identities=46% Similarity=0.546 Sum_probs=20.5
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
+++|.++|+.|+||||.+.+++..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~ 24 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR 24 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHH
Confidence 369999999999999999777653
No 252
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.46 E-value=0.0065 Score=66.94 Aligned_cols=82 Identities=20% Similarity=0.242 Sum_probs=51.5
Q ss_pred CCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcC--------CC
Q 035555 121 QKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVA--------GK 192 (767)
Q Consensus 121 ~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~--------~k 192 (767)
.+..++..++|++|+||||||..|+++.-++ . +..+.........+..+|...++ ++
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaGYs----V-----------vEINASDeRt~~~v~~kI~~avq~~s~l~adsr 387 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAGYS----V-----------VEINASDERTAPMVKEKIENAVQNHSVLDADSR 387 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcCce----E-----------EEecccccccHHHHHHHHHHHHhhccccccCCC
Confidence 4567899999999999999999998853221 1 01112222333344444444333 56
Q ss_pred eEEEEEeCCCCcChhhHHHHHHhhh
Q 035555 193 KLLLVLDDVWNEDFYKWEQFYNCLK 217 (767)
Q Consensus 193 ~~LlVlDdv~~~~~~~~~~l~~~l~ 217 (767)
+.-||+|.++.......+.++..+.
T Consensus 388 P~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 388 PVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred cceEEEecccCCcHHHHHHHHHHHH
Confidence 7779999997665455566666555
No 253
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.36 E-value=0.025 Score=63.91 Aligned_cols=128 Identities=15% Similarity=0.133 Sum_probs=71.8
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccc-hhhhhh---h---HHHHHHHHHHH
Q 035555 95 DESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDD-VKKILR---K---EYGIARAIIEA 167 (767)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~-~~~~F~---~---~~~i~~~i~~~ 167 (767)
....++|....+.++.+.+..-.. ....|.|+|..|+|||++|+.+++... -...|- + ...... ..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~---~~ 266 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLE---SE 266 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHH---HH
Confidence 446799999999998888765432 334678999999999999999987422 122232 1 111111 11
Q ss_pred hhCCCC-CccchHHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCC-----------CCcEEEEEcCc
Q 035555 168 LTYSSS-NFVEFQSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCL-----------HGSKILITTRK 231 (767)
Q Consensus 168 l~~~~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 231 (767)
+-+... ....... ...........-.|+||++..-.......+...+..+. ...+||.||..
T Consensus 267 lfg~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 267 LFGHEKGAFTGAIA--QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred HcCCCCCccCCCCc--CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 111110 0000000 00000001223468899998777777777877776532 12478887754
No 254
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.36 E-value=0.0091 Score=55.78 Aligned_cols=75 Identities=15% Similarity=0.175 Sum_probs=40.0
Q ss_pred EEEEEccCCChHHHHHHHHHcccchhhhh-hh----HHHHHHHHHHHhhCCCCCcc---chHHHHHHHHHhcCCCeEEEE
Q 035555 126 VISLVGMGGIGKTTLAQFAYNNDDVKKIL-RK----EYGIARAIIEALTYSSSNFV---EFQSLMQHIQKHVAGKKLLLV 197 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~----~~~i~~~i~~~l~~~~~~~~---~~~~~~~~l~~~l~~k~~LlV 197 (767)
++.|.|.+|+||||+|..+.......-.| .. ..+..+.|............ ...++...+.....+. -+++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~-~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPG-RCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCC-CEEE
Confidence 68999999999999999887642111111 11 33344444444332222211 1123444454433332 3688
Q ss_pred EeCC
Q 035555 198 LDDV 201 (767)
Q Consensus 198 lDdv 201 (767)
+|.+
T Consensus 82 ID~L 85 (170)
T PRK05800 82 VDCL 85 (170)
T ss_pred ehhH
Confidence 8886
No 255
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.34 E-value=0.11 Score=57.45 Aligned_cols=196 Identities=15% Similarity=0.098 Sum_probs=108.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccc------hhhhhhh----------HHH
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDD------VKKILRK----------EYG 159 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~------~~~~F~~----------~~~ 159 (767)
+..+-+||.+..+|-..+..--.. +...+.+-|.|.+|+|||..+..|.+.-+ -...|+. ..+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPRE 473 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHH
Confidence 345679999999998887654331 23456999999999999999999987321 1123443 778
Q ss_pred HHHHHHHHhhCCCCCccchHHHHHHHHHhc-----CCCeEEEEEeCCCCcChhhHHHHHHhhhcC-CCCcEEEEEcCc--
Q 035555 160 IARAIIEALTYSSSNFVEFQSLMQHIQKHV-----AGKKLLLVLDDVWNEDFYKWEQFYNCLKTC-LHGSKILITTRK-- 231 (767)
Q Consensus 160 i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~-- 231 (767)
+...|.+.+.+... .+......|..+. +.+.+++++|+++.--...-+-+-..|.+- .++|+++|-+=.
T Consensus 474 ~Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 474 IYEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccc
Confidence 88888888876432 2233333333333 245688889987321111123344444432 567776654321
Q ss_pred hhH---------HhhhcCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHHh
Q 035555 232 ETV---------ARIMGSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIAS 297 (767)
Q Consensus 232 ~~v---------~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 297 (767)
-+. ...++ ...+...+-+.++-.++...+..+. ........+=++++|+.--|-.-.|+.+.-+
T Consensus 551 mdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~R 623 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRR 623 (767)
T ss_pred ccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHH
Confidence 111 11111 2355666667777666666554322 1122333344444454444444444444333
No 256
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.34 E-value=0.002 Score=62.34 Aligned_cols=37 Identities=22% Similarity=0.012 Sum_probs=18.5
Q ss_pred CCCCCcEEEccCC--ccccccCcccccCcCCcEeeCCCC
Q 035555 488 ELYNLECLAISFC--TNLRQLPQGIGKLRKLMYLDNDYT 524 (767)
Q Consensus 488 ~l~~L~~L~L~~~--~~l~~lp~~~~~l~~L~~L~l~~~ 524 (767)
.|++|++|+++.| .....++.....+++|++|++++|
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 3455555555555 222333333444455555555555
No 257
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.32 E-value=0.019 Score=60.89 Aligned_cols=25 Identities=32% Similarity=0.239 Sum_probs=21.5
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...++.++|++|+||||+|..++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999888753
No 258
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.0017 Score=63.60 Aligned_cols=57 Identities=26% Similarity=0.266 Sum_probs=34.4
Q ss_pred cCCcccEEeecCCccccc---cchhhcCCCCCcEEEccCCccc---cccCcccccCcCCcEeeCCCC
Q 035555 464 KLIHLKYLNLSSQKKIKR---LPETLCELYNLECLAISFCTNL---RQLPQGIGKLRKLMYLDNDYT 524 (767)
Q Consensus 464 ~l~~L~~L~L~~~~~~~~---lp~~~~~l~~L~~L~L~~~~~l---~~lp~~~~~l~~L~~L~l~~~ 524 (767)
...+++.|||.+|. +.. +..-+.+++.|++|+|+.|..- ..+| -.+.+|+.|-+.+.
T Consensus 69 ~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT 131 (418)
T KOG2982|consen 69 SVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGT 131 (418)
T ss_pred Hhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCC
Confidence 45677777887777 543 3333557777888888777621 2222 23456777776665
No 259
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.19 E-value=0.015 Score=55.09 Aligned_cols=25 Identities=40% Similarity=0.626 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...+|.+.|+.|+||||+|+.+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~ 30 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER 30 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4569999999999999999999873
No 260
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.16 E-value=0.028 Score=54.12 Aligned_cols=98 Identities=20% Similarity=0.190 Sum_probs=48.6
Q ss_pred EEEEEEccCCChHHHHHHHHHcccchhhhhhh-----HHHHHHHHHHHhhCCCCCccchHHHHHHHHHhc---------C
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNNDDVKKILRK-----EYGIARAIIEALTYSSSNFVEFQSLMQHIQKHV---------A 190 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-----~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l---------~ 190 (767)
+++.|.|.+|.||||+++.+........ +.. .......+.+..+. ..... ...+...- .
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g-~~v~~~apT~~Aa~~L~~~~~~---~a~Ti---~~~l~~~~~~~~~~~~~~ 91 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG-KRVIGLAPTNKAAKELREKTGI---EAQTI---HSFLYRIPNGDDEGRPEL 91 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT---EEEEESSHHHHHHHHHHHTS----EEEH---HHHTTEECCEECCSSCC-
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC-CeEEEECCcHHHHHHHHHhhCc---chhhH---HHHHhcCCcccccccccC
Confidence 5888999999999999988876322211 221 11111112222111 01111 11111110 1
Q ss_pred CCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCc
Q 035555 191 GKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRK 231 (767)
Q Consensus 191 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 231 (767)
.+.-++|+|++.-.+...+..+....+. .|+++|+.--.
T Consensus 92 ~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 92 PKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred CcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 2345999999976665666666666554 47788766543
No 261
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.14 E-value=0.041 Score=53.05 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.9
Q ss_pred CEEEEEEccCCChHHHHHHHHH
Q 035555 124 PCVISLVGMGGIGKTTLAQFAY 145 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~ 145 (767)
-.+++|+|.+|.||||||+.+.
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~ 54 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLA 54 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHh
Confidence 3589999999999999999985
No 262
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.13 E-value=0.046 Score=53.76 Aligned_cols=54 Identities=19% Similarity=0.176 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhcCCCeEEEEEeCCC----CcChhhHHHHHHhhhcCCCCcEEEEEcCchh
Q 035555 178 FQSLMQHIQKHVAGKKLLLVLDDVW----NEDFYKWEQFYNCLKTCLHGSKILITTRKET 233 (767)
Q Consensus 178 ~~~~~~~l~~~l~~k~~LlVlDdv~----~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 233 (767)
.+.-.-.|.+.|-.++=|++||.-- .........+...+... |+-||++|-+-.
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~ 200 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLG 200 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcH
Confidence 3444456788899999999999742 22223333444445443 788888888743
No 263
>PRK04296 thymidine kinase; Provisional
Probab=96.09 E-value=0.012 Score=56.27 Aligned_cols=105 Identities=13% Similarity=0.044 Sum_probs=56.8
Q ss_pred EEEEEEccCCChHHHHHHHHHcccc--------hhhhhhhHHHHHHHHHHHhhCCCCC--ccchHHHHHHHHHhcCCCeE
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNNDD--------VKKILRKEYGIARAIIEALTYSSSN--FVEFQSLMQHIQKHVAGKKL 194 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~~~--------~~~~F~~~~~i~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~k~~ 194 (767)
.++.|+|..|.||||+|..+..... ++..|+.. .....++..++..... .....++.+.+.+ ..++.-
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~-~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~d 80 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDR-YGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEKID 80 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecccccc-ccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCCCC
Confidence 4788999999999999977765321 11122211 1122233333321111 1233455555555 333445
Q ss_pred EEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCchh
Q 035555 195 LLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKET 233 (767)
Q Consensus 195 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 233 (767)
++|+|.+.--+.++...+...+. ..|..|++|.++.+
T Consensus 81 vviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 81 CVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred EEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 89999995433222333333332 35778999999744
No 264
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.06 E-value=0.019 Score=60.12 Aligned_cols=45 Identities=16% Similarity=0.165 Sum_probs=34.3
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 99 IFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 99 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
++|+...+.++.+.+..-.. ...-|.|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHh
Confidence 46777777777777765433 3346889999999999999999763
No 265
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.05 E-value=0.018 Score=60.39 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=37.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..++|+...+.++.+.+..-.. ...-|.|+|..|+||+++|+.++..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 3589999988888888766543 3346889999999999999999753
No 266
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.05 E-value=0.0064 Score=56.44 Aligned_cols=88 Identities=28% Similarity=0.306 Sum_probs=59.3
Q ss_pred hccCCCCcCceEEEecCCccCCcccc-CCCCccEEEEeccC--CCCCCCCCCCCCCCCeeeecCCCCceEecc-cccCCC
Q 035555 588 ELEKKKNLFDLELRFDCNVIPKNWIM-SLTNLRYLSLSLFK--NCEQLLPLGKLQSLEYLQIGGMHGVKRVGN-EFLGVE 663 (767)
Q Consensus 588 ~l~~~~~L~~L~l~~~~~~~~p~~~~-~l~~L~~L~L~~~~--~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~-~~~~~~ 663 (767)
.|..++.|..|.+..|.++.+-+.+. -+++|..|.|.+|+ .+.++.++..+|.|++|.+-+|+ ++.-.. ..+ .
T Consensus 59 ~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~y-v- 135 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLY-V- 135 (233)
T ss_pred cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccCceeE-E-
Confidence 44556677778888887766544455 56788999998876 34577778889999999888887 332221 111 0
Q ss_pred CCCCCccccCCcccceeeccCc
Q 035555 664 SDTNGSSVIAFPKLRELKFSYM 685 (767)
Q Consensus 664 ~~~~~~~~~~~~~L~~L~L~~~ 685 (767)
+-.+|+|+.|++..-
T Consensus 136 -------l~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 136 -------LYKLPSLRTLDFQKV 150 (233)
T ss_pred -------EEecCcceEeehhhh
Confidence 236788888888753
No 267
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.04 E-value=0.067 Score=57.96 Aligned_cols=92 Identities=15% Similarity=0.136 Sum_probs=47.2
Q ss_pred CEEEEEEccCCChHHHHHHHHHcccc-hhhh-------hhh----HHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCC
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNNDD-VKKI-------LRK----EYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAG 191 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~~-~~~~-------F~~----~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 191 (767)
.+++.++|++|+||||++..++.... .... +|. ..+.+....+.++.+.....+..++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 46999999999999998876654211 1111 111 11222233333333322223344555555443 2
Q ss_pred CeEEEEEeCCCC--cChhhHHHHHHhhh
Q 035555 192 KKLLLVLDDVWN--EDFYKWEQFYNCLK 217 (767)
Q Consensus 192 k~~LlVlDdv~~--~~~~~~~~l~~~l~ 217 (767)
..=++++|..-. .+......+...+.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 346788997632 23333445555555
No 268
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.07 Score=61.74 Aligned_cols=127 Identities=14% Similarity=0.193 Sum_probs=78.4
Q ss_pred ccccchhHHHHHHHHHhcCCCCCC--CCCEEEEEEccCCChHHHHHHHHHcccchhhhhhh--------HHHHHHHHHHH
Q 035555 98 EIFGREKEKSELVNRLLCESSKEQ--KGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK--------EYGIARAIIEA 167 (767)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~~~--~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--------~~~i~~~i~~~ 167 (767)
.++|.++.+..|.+.+.....+.. .+..++.+.|+.|+|||-||+++..- + |+. ..+... +. .
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~---Fgse~~~IriDmse~~e-vs-k 635 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--V---FGSEENFIRLDMSEFQE-VS-K 635 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--H---cCCccceEEechhhhhh-hh-h
Confidence 368888888888888876543212 25778999999999999999988762 1 222 111111 22 2
Q ss_pred hhCCCCCccchHHHHHHHHHhcCCCeE-EEEEeCCCCcChhhHHHHHHhhhcCC----C------CcEEEEEcCch
Q 035555 168 LTYSSSNFVEFQSLMQHIQKHVAGKKL-LLVLDDVWNEDFYKWEQFYNCLKTCL----H------GSKILITTRKE 232 (767)
Q Consensus 168 l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~~----~------gs~ilvTtR~~ 232 (767)
+.+..+... ..+....|.+.++.++| .+.||||...+......+...+..+. . +..|+|.|.+.
T Consensus 636 ligsp~gyv-G~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 636 LIGSPPGYV-GKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred ccCCCcccc-cchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEeccc
Confidence 222222222 22333467777777776 57789998777666666666666542 2 23466666654
No 269
>PRK07667 uridine kinase; Provisional
Probab=96.03 E-value=0.009 Score=57.44 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHc
Q 035555 106 KSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 106 ~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+.|.+.+.... +...+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 455666665443 2558999999999999999998877
No 270
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.085 Score=59.74 Aligned_cols=181 Identities=15% Similarity=0.114 Sum_probs=98.7
Q ss_pred Cccccchh---HHHHHHHHHhcCCCC---CCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhC
Q 035555 97 SEIFGREK---EKSELVNRLLCESSK---EQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTY 170 (767)
Q Consensus 97 ~~~vGr~~---~~~~l~~~L~~~~~~---~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~ 170 (767)
.++.|-|+ |+.+++..|.++... +-.-++=|.++|++|.|||-||++++-...+-..+-. -.+..+.+.+
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svS----GSEFvE~~~g 386 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVS----GSEFVEMFVG 386 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeec----hHHHHHHhcc
Confidence 45778766 555566666554321 2234567889999999999999999986444321111 0111222211
Q ss_pred CCCCccchHHHHHHHHH-hcCCCeEEEEEeCCCC---------------cChhhHHHHHHhhhcCCCCc-E-EEEEcCch
Q 035555 171 SSSNFVEFQSLMQHIQK-HVAGKKLLLVLDDVWN---------------EDFYKWEQFYNCLKTCLHGS-K-ILITTRKE 232 (767)
Q Consensus 171 ~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~---------------~~~~~~~~l~~~l~~~~~gs-~-ilvTtR~~ 232 (767)
.. ...++.|.. .=...++++.+|+++. +......++......+.... . ++-+|+..
T Consensus 387 ~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~ 460 (774)
T KOG0731|consen 387 VG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRP 460 (774)
T ss_pred cc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCc
Confidence 10 111222222 2234677888887631 11234455555554443333 2 33345544
Q ss_pred hHHhh--hc---CcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcch
Q 035555 233 TVARI--MG---SADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLV 291 (767)
Q Consensus 233 ~v~~~--~~---~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 291 (767)
++... +. -...+.++.-+.....++|.-++....-. .+..++++ |+...-|.+=|
T Consensus 461 d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 461 DILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred cccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHH-HHhcCCCCcHH
Confidence 44322 11 15677788778888888888876433321 34445555 88888888743
No 271
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.98 E-value=0.036 Score=56.72 Aligned_cols=25 Identities=40% Similarity=0.395 Sum_probs=21.6
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..++++|+|++|+||||++..++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999887653
No 272
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.97 E-value=0.17 Score=51.49 Aligned_cols=49 Identities=24% Similarity=0.251 Sum_probs=36.8
Q ss_pred CCCccccchhHHHH---HHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 95 DESEIFGREKEKSE---LVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 95 ~~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
....+||..+..+. |+++..+.. ..-+.|.|+|++|.|||+||-.+.+.
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk----~aGrgiLi~GppgTGKTAlA~gIa~e 88 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGK----MAGRGILIVGPPGTGKTALAMGIARE 88 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCc----ccccEEEEECCCCCcHHHHHHHHHHH
Confidence 34579998776554 666665543 25678999999999999999887653
No 273
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.11 Score=57.19 Aligned_cols=155 Identities=16% Similarity=0.093 Sum_probs=77.9
Q ss_pred CccccchhHHHHHHHHHhcCCCC-------CCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhh--HHHHHHHHHHH
Q 035555 97 SEIFGREKEKSELVNRLLCESSK-------EQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK--EYGIARAIIEA 167 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~~i~~~i~~~ 167 (767)
.++=|-|+.+.+|.+...-+... +-...+-|..+|++|.|||++|+++++. -...|-. -.++...
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nFlsvkgpEL~sk---- 507 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNFLSVKGPELFSK---- 507 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCeeeccCHHHHHH----
Confidence 34555777666666554332110 1236678999999999999999999994 2223322 0001000
Q ss_pred hhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCc-----------ChhhHHHHHHhhhcCCCCcEEEE---EcCchh
Q 035555 168 LTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE-----------DFYKWEQFYNCLKTCLHGSKILI---TTRKET 233 (767)
Q Consensus 168 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l~~~~~gs~ilv---TtR~~~ 233 (767)
........+.+..++.-+--+.++.||.++.- ..-...+++..+........|+| |-|...
T Consensus 508 -----~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ 582 (693)
T KOG0730|consen 508 -----YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDM 582 (693)
T ss_pred -----hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhh
Confidence 00111122222223333345688888877321 01122333344332222223333 333333
Q ss_pred HHh-hhc---CcceEecCCCChhHHHHHHHHhc
Q 035555 234 VAR-IMG---SADIISVNVLSETECWLVFESLG 262 (767)
Q Consensus 234 v~~-~~~---~~~~~~l~~L~~~~~~~l~~~~~ 262 (767)
+.. .+. ....+-++.=+.+...++|+.++
T Consensus 583 ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~ 615 (693)
T KOG0730|consen 583 IDPALLRPGRLDRIIYVPLPDLEARLEILKQCA 615 (693)
T ss_pred cCHHHcCCcccceeEeecCccHHHHHHHHHHHH
Confidence 322 222 24566666667777788888876
No 274
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.95 E-value=0.071 Score=50.14 Aligned_cols=113 Identities=16% Similarity=0.222 Sum_probs=58.3
Q ss_pred CEEEEEEccCCChHHHHHHHHHcccc-hhh--hhhh--HHHH-HHHHHHHhhCC--CCC----------ccchHHHHHHH
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNNDD-VKK--ILRK--EYGI-ARAIIEALTYS--SSN----------FVEFQSLMQHI 185 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~~-~~~--~F~~--~~~i-~~~i~~~l~~~--~~~----------~~~~~~~~~~l 185 (767)
-.+++|+|+.|.|||||.+.++.-.. ... .|+. .... .....+.+... ... ....+...-.+
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~l 107 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIAI 107 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHHH
Confidence 35899999999999999999976311 011 0111 0000 00011111100 000 11122222235
Q ss_pred HHhcCCCeEEEEEeCCCC-cChhhHHHHHHhhhcCCCCcEEEEEcCchhHHh
Q 035555 186 QKHVAGKKLLLVLDDVWN-EDFYKWEQFYNCLKTCLHGSKILITTRKETVAR 236 (767)
Q Consensus 186 ~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 236 (767)
...+-.++-++++|+-.. -|......+...+.....+..||++|.+.+...
T Consensus 108 a~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 108 ARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 556666778999998743 233444455555543333566888888766554
No 275
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.94 E-value=0.0065 Score=56.38 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=46.1
Q ss_pred ccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccc-cCcCCcEeeCCCCCCccccc--ccCcCCcCCcccc
Q 035555 468 LKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIG-KLRKLMYLDNDYTNSLRYLP--VGIRELIRLRRVR 544 (767)
Q Consensus 468 L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~-~l~~L~~L~l~~~~~l~~lp--~~~~~l~~L~~L~ 544 (767)
...+||++|. +..++. +..++.|.+|.|.+|. +..+-..+. .+++|..|.+.+| .+..+. ..+..++.|+.|.
T Consensus 44 ~d~iDLtdNd-l~~l~~-lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 44 FDAIDLTDND-LRKLDN-LPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cceecccccc-hhhccc-CCCccccceEEecCCc-ceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence 3445566555 444332 4455566666666655 333333332 3455666666555 333322 1233444555554
Q ss_pred eeEecCccCCCCChhhhhcCCCCCCeeeeC
Q 035555 545 KFVVGGGYDRACSLESLKRLILLRECRIHG 574 (767)
Q Consensus 545 ~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~ 574 (767)
+..+..........--+-.+++|+.|+...
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 444333322222222233444555554443
No 276
>PRK03839 putative kinase; Provisional
Probab=95.94 E-value=0.0091 Score=56.78 Aligned_cols=22 Identities=32% Similarity=0.676 Sum_probs=20.3
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.|.|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999885
No 277
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.92 E-value=0.033 Score=58.11 Aligned_cols=92 Identities=17% Similarity=0.128 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHccc-----chhhhh-------hhHHHHHHHHHHHhhCCC
Q 035555 105 EKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNND-----DVKKIL-------RKEYGIARAIIEALTYSS 172 (767)
Q Consensus 105 ~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~-----~~~~~F-------~~~~~i~~~i~~~l~~~~ 172 (767)
...++++.+..-. .-..+.|+|.+|+|||||++.+++.. .+.-.+ ..+.++.+.+...+..+.
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast 193 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAST 193 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeec
Confidence 4556777776432 22457999999999999999987631 111011 015667777766655433
Q ss_pred CCccch-----HHHHHHHHHhc--CCCeEEEEEeCC
Q 035555 173 SNFVEF-----QSLMQHIQKHV--AGKKLLLVLDDV 201 (767)
Q Consensus 173 ~~~~~~-----~~~~~~l~~~l--~~k~~LlVlDdv 201 (767)
...... ......+.+++ ++++.+||+|++
T Consensus 194 ~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 194 FDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 211111 11111122222 489999999999
No 278
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.92 E-value=0.1 Score=51.07 Aligned_cols=212 Identities=12% Similarity=0.103 Sum_probs=110.5
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc------cchh---hhhhh--HHHHHHHHH-
Q 035555 98 EIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN------DDVK---KILRK--EYGIARAII- 165 (767)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~------~~~~---~~F~~--~~~i~~~i~- 165 (767)
.+.++++....+...... .+..-..++|++|.||-|.+..+.+. ++.+ ..|.. -..+--...
T Consensus 14 ~l~~~~e~~~~Lksl~~~------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvs 87 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSST------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVS 87 (351)
T ss_pred hcccHHHHHHHHHHhccc------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEec
Confidence 367777777777766542 25678899999999999988665442 0000 01110 000000000
Q ss_pred --HHh--hCCCCCccchHHHHHHHHHhc-------C-CCeE-EEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCc-
Q 035555 166 --EAL--TYSSSNFVEFQSLMQHIQKHV-------A-GKKL-LLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRK- 231 (767)
Q Consensus 166 --~~l--~~~~~~~~~~~~~~~~l~~~l-------~-~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~- 231 (767)
..+ ..++.+..|.--+++.|++.- . .+.| ++|+-.+++-..+.-..++.....-...+|+|+...+
T Consensus 88 S~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~ 167 (351)
T KOG2035|consen 88 SNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNST 167 (351)
T ss_pred ccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCc
Confidence 000 000001111111222222211 1 2344 4666666554445555566666666677888875443
Q ss_pred -hhHHhhhcCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHHhHHhcC--C-----
Q 035555 232 -ETVARIMGSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIASLLRSK--N----- 303 (767)
Q Consensus 232 -~~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~--~----- 303 (767)
+-+...-...-.+.++..+++|....+....-..+- .. -++++..|+++++|.---.-.+-..++-+ +
T Consensus 168 SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l-~l---p~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~ 243 (351)
T KOG2035|consen 168 SRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL-QL---PKELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANS 243 (351)
T ss_pred ccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc-cC---cHHHHHHHHHHhcccHHHHHHHHHHHHhccccccccC
Confidence 222223334568899999999999998877533222 11 25779999999987653332222222211 1
Q ss_pred ---CHHHHHHHHhhhcccc
Q 035555 304 ---TEKEWQNILESEIWEI 319 (767)
Q Consensus 304 ---~~~~w~~~~~~~~~~~ 319 (767)
..-+|+..+.+....+
T Consensus 244 ~~i~~~dWe~~i~e~a~~i 262 (351)
T KOG2035|consen 244 QVIPKPDWEIYIQEIARVI 262 (351)
T ss_pred CCCCCccHHHHHHHHHHHH
Confidence 2347887776544443
No 279
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.92 E-value=0.0083 Score=57.28 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=22.9
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.+.+|+|.|.+|+||||+|+.++..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~ 31 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQ 31 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999884
No 280
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.88 E-value=0.0067 Score=58.76 Aligned_cols=66 Identities=18% Similarity=0.165 Sum_probs=38.9
Q ss_pred ccccccCCcccEEeecCCc---ccccc-------chhhcCCCCCcEEEccCCccccccCcc----cccCcCCcEeeCCCC
Q 035555 459 PTNIEKLIHLKYLNLSSQK---KIKRL-------PETLCELYNLECLAISFCTNLRQLPQG----IGKLRKLMYLDNDYT 524 (767)
Q Consensus 459 p~~~~~l~~L~~L~L~~~~---~~~~l-------p~~~~~l~~L~~L~L~~~~~l~~lp~~----~~~l~~L~~L~l~~~ 524 (767)
...+.+-.+|+..+++.-. ....+ .+.+-+|++|+..+||.|.+-...|+. +.+-++|.||.+++|
T Consensus 51 ~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 51 CNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred HHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 3445555666666666432 01122 234557777777777777755555543 455677777777776
No 281
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.86 E-value=0.071 Score=50.12 Aligned_cols=119 Identities=13% Similarity=0.138 Sum_probs=62.5
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc---cchhhh---hhh-----HHHHHHHHHHHhhCCCC-------CccchHHHHHHH
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN---DDVKKI---LRK-----EYGIARAIIEALTYSSS-------NFVEFQSLMQHI 185 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~---~~~~~~---F~~-----~~~i~~~i~~~l~~~~~-------~~~~~~~~~~~l 185 (767)
-.+++|+|+.|.|||||.+.+..+ ..+... |.. ..+ .+.+..++.... .....+...-.+
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q--~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~l 98 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQ--LQFLIDVGLGYLTLGQKLSTLSGGELQRVKL 98 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhH--HHHHHHcCCCccccCCCcCcCCHHHHHHHHH
Confidence 458999999999999999988532 111111 100 111 234444443211 112222223334
Q ss_pred HHhcCCC--eEEEEEeCCCC-cChhhHHHHHHhhhcC-CCCcEEEEEcCchhHHhhhcCcceEec
Q 035555 186 QKHVAGK--KLLLVLDDVWN-EDFYKWEQFYNCLKTC-LHGSKILITTRKETVARIMGSADIISV 246 (767)
Q Consensus 186 ~~~l~~k--~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~~~~~~~~~~l 246 (767)
...+-.+ +-++++|+.-. -+......+...+... ..|..||++|.+.+.... ....+.+
T Consensus 99 aral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 99 ASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 4555556 67888898633 2334444455554432 245668888887665432 3344444
No 282
>PRK14974 cell division protein FtsY; Provisional
Probab=95.84 E-value=0.12 Score=53.85 Aligned_cols=106 Identities=17% Similarity=0.125 Sum_probs=52.2
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcccchh---------hhhhh-HHHHHHHHHHHhhCCCCC---ccchHH-HHHHHHHh
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNNDDVK---------KILRK-EYGIARAIIEALTYSSSN---FVEFQS-LMQHIQKH 188 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~~~~~---------~~F~~-~~~i~~~i~~~l~~~~~~---~~~~~~-~~~~l~~~ 188 (767)
+..+|.++|+.|+||||++..++....-. ..|.. ..+.++..+..++.+... ..+... ..+.+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 46899999999999999777665421111 11211 223334445554432111 112222 22223322
Q ss_pred cCCCeEEEEEeCCCCc--ChhhHHHHHHhhhcCCCCcEEEEE
Q 035555 189 VAGKKLLLVLDDVWNE--DFYKWEQFYNCLKTCLHGSKILIT 228 (767)
Q Consensus 189 l~~k~~LlVlDdv~~~--~~~~~~~l~~~l~~~~~gs~ilvT 228 (767)
.....=++++|-+-.. +...+..+........+...++|.
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl 260 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVG 260 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEee
Confidence 2222238999988543 334455555444433444445543
No 283
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.83 E-value=0.022 Score=58.74 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=24.0
Q ss_pred CCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 122 KGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 122 ~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..++.++|||++|.|||.+|+++++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999995
No 284
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.82 E-value=0.078 Score=50.34 Aligned_cols=112 Identities=15% Similarity=0.194 Sum_probs=60.4
Q ss_pred CEEEEEEccCCChHHHHHHHHHcccc------------hhh----hhhhHHHHHHHHHHHhhCC------CCCccchHHH
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNNDD------------VKK----ILRKEYGIARAIIEALTYS------SSNFVEFQSL 181 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~~------------~~~----~F~~~~~i~~~i~~~l~~~------~~~~~~~~~~ 181 (767)
-.+++|+|..|.|||||++.++.... +.. .+........++++.++.. .......+..
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~q 104 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQ 104 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHH
Confidence 35899999999999999999976311 100 0000011111133333321 1112233333
Q ss_pred HHHHHHhcCCCeEEEEEeCCCC-cChhhHHHHHHhhhcC-CC-CcEEEEEcCchhHH
Q 035555 182 MQHIQKHVAGKKLLLVLDDVWN-EDFYKWEQFYNCLKTC-LH-GSKILITTRKETVA 235 (767)
Q Consensus 182 ~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~ilvTtR~~~v~ 235 (767)
.-.+...+-..+-++++|+.-. -+......+...+... .. |..||++|.+....
T Consensus 105 rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 105 RVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 3345566667788999998742 2334444555555432 22 56678888775543
No 285
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.82 E-value=0.034 Score=50.62 Aligned_cols=24 Identities=46% Similarity=0.520 Sum_probs=21.0
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..+|.|.|.+|+||||||+++.+.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~ 25 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR 25 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999764
No 286
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.12 Score=49.43 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=21.9
Q ss_pred CEEEEEEccCCChHHHHHHHHHccc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNND 148 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~ 148 (767)
--+-+|.|+.|+||||||..+.-++
T Consensus 30 GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 30 GEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3488999999999999999997664
No 287
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.80 E-value=0.0064 Score=54.29 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
--|+|.|++|+||||+++.+.+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHH
Confidence 46899999999999999999863
No 288
>PRK00625 shikimate kinase; Provisional
Probab=95.80 E-value=0.057 Score=50.58 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.8
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.|.++||+|+||||+|+.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
No 289
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.77 E-value=0.1 Score=49.49 Aligned_cols=113 Identities=17% Similarity=0.162 Sum_probs=59.1
Q ss_pred CEEEEEEccCCChHHHHHHHHHcccch-hh--hhhh--HHHHHHHHHHHhhC--C-------------CCCccchHHHHH
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNNDDV-KK--ILRK--EYGIARAIIEALTY--S-------------SSNFVEFQSLMQ 183 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~~~-~~--~F~~--~~~i~~~i~~~l~~--~-------------~~~~~~~~~~~~ 183 (767)
-.+++|.|..|.|||||++.+..-... .. .|+. .........+.+.. . .......+...-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv 107 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRL 107 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHH
Confidence 348999999999999999999764211 11 0111 11111111111110 0 001111222223
Q ss_pred HHHHhcCCCeEEEEEeCCCCc-ChhhHHHHHHhhhcCCCCcEEEEEcCchhHHh
Q 035555 184 HIQKHVAGKKLLLVLDDVWNE-DFYKWEQFYNCLKTCLHGSKILITTRKETVAR 236 (767)
Q Consensus 184 ~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 236 (767)
.+...+-.++-++++|+.... +......+...+.....+..||++|.+.....
T Consensus 108 ~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 108 ALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 355566677788999987432 33334444455443334667888888766554
No 290
>PRK13948 shikimate kinase; Provisional
Probab=95.75 E-value=0.051 Score=51.34 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=22.3
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..+.|.++|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 5578999999999999999999874
No 291
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.73 E-value=0.1 Score=59.99 Aligned_cols=154 Identities=15% Similarity=0.111 Sum_probs=78.3
Q ss_pred ccccchhHHHHHHHHHh---cCCCC---CCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhh--HHHHHHHHHHHhh
Q 035555 98 EIFGREKEKSELVNRLL---CESSK---EQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK--EYGIARAIIEALT 169 (767)
Q Consensus 98 ~~vGr~~~~~~l~~~L~---~~~~~---~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~~i~~~i~~~l~ 169 (767)
++.|.+...+++.+.+. ..... +..-.+-|.++|++|.|||++|+.+.+... ..|-. ..++. ....
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~--~~f~~is~~~~~----~~~~ 226 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--VPFFTISGSDFV----EMFV 226 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CCEEEEehHHhH----Hhhh
Confidence 46777766666555442 21100 011233499999999999999999987422 22211 01110 1110
Q ss_pred CCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCc----------ChhhHHH----HHHhhhcC--CCCcEEEEEcCchh
Q 035555 170 YSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE----------DFYKWEQ----FYNCLKTC--LHGSKILITTRKET 233 (767)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~~~----l~~~l~~~--~~gs~ilvTtR~~~ 233 (767)
+ .....+...+.......++++++|+++.- ....+.. +...+... ..+.-+|.||...+
T Consensus 227 g-----~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~ 301 (644)
T PRK10733 227 G-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD 301 (644)
T ss_pred c-----ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChh
Confidence 0 11122223333344456789999998431 0112222 22222221 23444555776644
Q ss_pred HHhh-h----cCcceEecCCCChhHHHHHHHHhc
Q 035555 234 VARI-M----GSADIISVNVLSETECWLVFESLG 262 (767)
Q Consensus 234 v~~~-~----~~~~~~~l~~L~~~~~~~l~~~~~ 262 (767)
.... . .....+.++.-+.++-.+++..+.
T Consensus 302 ~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 302 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 335 (644)
T ss_pred hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHh
Confidence 3221 1 114677888888888888877765
No 292
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.72 E-value=0.18 Score=51.87 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=30.8
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 98 EIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.++=..+....+...+... +.|.|.|++|+||||+|++++..
T Consensus 46 ~y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~~ 87 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAAR 87 (327)
T ss_pred CccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHHH
Confidence 4444445566677777432 35999999999999999999773
No 293
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.72 E-value=0.034 Score=63.82 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=34.2
Q ss_pred HHHHHhcCCCeEEEEEeCCCCc-ChhhHHHHHHhhhcC-CCCcEEEEEcCchhHH
Q 035555 183 QHIQKHVAGKKLLLVLDDVWNE-DFYKWEQFYNCLKTC-LHGSKILITTRKETVA 235 (767)
Q Consensus 183 ~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~ 235 (767)
=.|.+.+-.++-+|+||..-+. |.+.-..+...+... ...+.|+||-|...+.
T Consensus 618 lalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~ 672 (709)
T COG2274 618 LALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR 672 (709)
T ss_pred HHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh
Confidence 3466777888999999997432 223333455555433 3467899999976554
No 294
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.71 E-value=0.046 Score=54.16 Aligned_cols=115 Identities=18% Similarity=0.234 Sum_probs=65.5
Q ss_pred ccccchhHHHHHHHHHhcCC-CCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCCcc
Q 035555 98 EIFGREKEKSELVNRLLCES-SKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSNFV 176 (767)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~-~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~~~ 176 (767)
.++|.--.++.|+..+.+-- +.....+-+++.+|..|+||.-+|+.++++..-... .-......... ...++..
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl---~S~~V~~fvat--~hFP~~~ 157 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGL---RSPFVHHFVAT--LHFPHAS 157 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccc---cchhHHHhhhh--ccCCChH
Confidence 46676555555555554311 112356789999999999999999998875211100 00000111111 1223333
Q ss_pred chH----HHHHHHHHhcC-CCeEEEEEeCCCCcChhhHHHHHHhhh
Q 035555 177 EFQ----SLMQHIQKHVA-GKKLLLVLDDVWNEDFYKWEQFYNCLK 217 (767)
Q Consensus 177 ~~~----~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~l~ 217 (767)
..+ ++..++++.++ -+|-|+|+|+|+-....-.+.+...+.
T Consensus 158 ~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 158 KIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 333 34444554443 378999999997776666677777666
No 295
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.70 E-value=0.0074 Score=53.64 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=19.4
Q ss_pred EEEEccCCChHHHHHHHHHcc
Q 035555 127 ISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 127 v~I~G~gGiGKTtLa~~v~~~ 147 (767)
|+|.|++|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999884
No 296
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.68 E-value=0.0078 Score=58.01 Aligned_cols=21 Identities=43% Similarity=0.581 Sum_probs=19.6
Q ss_pred EEEEEccCCChHHHHHHHHHc
Q 035555 126 VISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~ 146 (767)
||+|.|.+|+||||+|+++..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998876
No 297
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.65 E-value=0.099 Score=55.57 Aligned_cols=96 Identities=20% Similarity=0.219 Sum_probs=53.8
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcccchh-------------hhhhh-HHHHHHHHHHHhhCCCCCccchHHHHHHHHHh
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNNDDVK-------------KILRK-EYGIARAIIEALTYSSSNFVEFQSLMQHIQKH 188 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~~~~~-------------~~F~~-~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 188 (767)
..++|.++|+.|+||||.+..++...... ..|.. ..+.++..++.++.+.......+++...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 46799999999999999998876532211 11111 22334555555544333333445555555443
Q ss_pred cCCCeEEEEEeCCCCcC--hhhHHHHHHhhhcCC
Q 035555 189 VAGKKLLLVLDDVWNED--FYKWEQFYNCLKTCL 220 (767)
Q Consensus 189 l~~k~~LlVlDdv~~~~--~~~~~~l~~~l~~~~ 220 (767)
.+.-++++|.+-... ......+...+....
T Consensus 253 --~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~ 284 (388)
T PRK12723 253 --KDFDLVLVDTIGKSPKDFMKLAEMKELLNACG 284 (388)
T ss_pred --CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcC
Confidence 345688899885432 223445555555433
No 298
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.65 E-value=0.022 Score=66.46 Aligned_cols=127 Identities=16% Similarity=0.228 Sum_probs=71.1
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccc-hhhhh---hhHHHHHHHHHH-HhhCC
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDD-VKKIL---RKEYGIARAIIE-ALTYS 171 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~-~~~~F---~~~~~i~~~i~~-~l~~~ 171 (767)
..++|+...+..+.+.+..-.. ....|.|+|..|+|||++|+.+++... -...| ++. .+....++ .+-+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~-~~~~~~~~~~lfg~ 450 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCA-AMPAGLLESDLFGH 450 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecc-cCChhHhhhhhcCc
Confidence 4689999988888776654332 334688999999999999999987422 11122 220 00011111 11111
Q ss_pred CC-Cccc-hHHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCC-----------CCcEEEEEcCc
Q 035555 172 SS-NFVE-FQSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCL-----------HGSKILITTRK 231 (767)
Q Consensus 172 ~~-~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 231 (767)
.. .... .......+. ....=.|+||+|..-.......+...+.... .+.|||.||..
T Consensus 451 ~~~~~~g~~~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 451 ERGAFTGASAQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred ccccccccccchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 10 0000 001111121 1223469999998777667777877775431 34588888865
No 299
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.65 E-value=0.016 Score=55.96 Aligned_cols=106 Identities=10% Similarity=0.088 Sum_probs=54.6
Q ss_pred EEEEEEccCCChHHHHHHHHHcccch--hhh-h--hhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEe
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNNDDV--KKI-L--RKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLD 199 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~~~~--~~~-F--~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlD 199 (767)
.+|.|+|+.|+||||++..+...... ..+ + ....+....-...+-.......+.....+.++..++..+=.+++|
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~g 81 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVG 81 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEc
Confidence 37999999999999999887653110 000 1 110010000000000000001122345566777787777899999
Q ss_pred CCCCcChhhHHHHHHhhhcCCCCcEEEEEcCchhHH
Q 035555 200 DVWNEDFYKWEQFYNCLKTCLHGSKILITTRKETVA 235 (767)
Q Consensus 200 dv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 235 (767)
++.+. +.+....... ..|..++.|+-..++.
T Consensus 82 Eird~--e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 82 EMRDL--ETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred CCCCH--HHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 99543 3344333332 2455677777655544
No 300
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.65 E-value=0.076 Score=48.24 Aligned_cols=101 Identities=20% Similarity=0.228 Sum_probs=57.1
Q ss_pred CEEEEEEccCCChHHHHHHHHHcccch-hh--hhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeC
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNNDDV-KK--ILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDD 200 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~~~-~~--~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDd 200 (767)
-.+++|+|..|.|||||++.+...... .. .++.. ..+.... .....+...-.+...+-.++-++++|+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~--------~~i~~~~-~lS~G~~~rv~laral~~~p~illlDE 96 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST--------VKIGYFE-QLSGGEKMRLALAKLLLENPNLLLLDE 96 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe--------EEEEEEc-cCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 358999999999999999999774211 11 01110 0000000 022233333345566666778899998
Q ss_pred CCC-cChhhHHHHHHhhhcCCCCcEEEEEcCchhHH
Q 035555 201 VWN-EDFYKWEQFYNCLKTCLHGSKILITTRKETVA 235 (767)
Q Consensus 201 v~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 235 (767)
.-. -|......+...+... +..||++|.+.+..
T Consensus 97 P~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 97 PTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred CccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 742 3445555666666543 23577777765444
No 301
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.62 E-value=0.048 Score=49.88 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=33.8
Q ss_pred HHHHhcCCCe-EEEEEeCCCC---cChhhHHHHHHhhhcCCCCcEEEEEcCch
Q 035555 184 HIQKHVAGKK-LLLVLDDVWN---EDFYKWEQFYNCLKTCLHGSKILITTRKE 232 (767)
Q Consensus 184 ~l~~~l~~k~-~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 232 (767)
..++.+.... =|+|||++-. ......+.+...+.....+..||+|.|+.
T Consensus 86 ~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 86 FAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 3444444444 4999999832 23345677888888777788999999984
No 302
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.62 E-value=0.0022 Score=55.54 Aligned_cols=76 Identities=29% Similarity=0.387 Sum_probs=63.3
Q ss_pred CCcccccccc-cCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCcccccc
Q 035555 454 YIKEIPTNIE-KLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPV 532 (767)
Q Consensus 454 ~~~~lp~~~~-~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~ 532 (767)
.++.+|+.|. +++.++.|++++|. +..+|..+..++.|+.|+++.|. +...|.-+-.|.+|-.|+..++ ....+|.
T Consensus 64 ~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~n-a~~eid~ 140 (177)
T KOG4579|consen 64 GFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSPEN-ARAEIDV 140 (177)
T ss_pred hhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCCCC-ccccCcH
Confidence 5677786654 55689999999999 99999989999999999999998 7788888878999999998887 5555553
No 303
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.61 E-value=0.022 Score=52.99 Aligned_cols=22 Identities=41% Similarity=0.436 Sum_probs=19.7
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
+.|.+.|.+|+||||+|+++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 4688999999999999998876
No 304
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.61 E-value=0.072 Score=58.24 Aligned_cols=120 Identities=18% Similarity=0.323 Sum_probs=63.8
Q ss_pred CCEEEEEEccCCChHHH-HHHHHHcc------------cchhhhhhhHHHHHHHHHHHhhCCCC----------Cc----
Q 035555 123 GPCVISLVGMGGIGKTT-LAQFAYNN------------DDVKKILRKEYGIARAIIEALTYSSS----------NF---- 175 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTt-La~~v~~~------------~~~~~~F~~~~~i~~~i~~~l~~~~~----------~~---- 175 (767)
...||.|+|..|+|||| ||+.+|.+ |+-.. ...+.+.+.+.+++.-. ..
T Consensus 370 ~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvA----AiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~ 445 (1042)
T KOG0924|consen 370 ENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVA----AISVAKRVAEEMGVTLGDTVGYSIRFEDVTSED 445 (1042)
T ss_pred hCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHH----HHHHHHHHHHHhCCccccccceEEEeeecCCCc
Confidence 34599999999999987 66777765 11111 23333444444432100 00
Q ss_pred ------cchHHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhh---cCCCCcEEEEEcCch---hHHhhhcCcce
Q 035555 176 ------VEFQSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLK---TCLHGSKILITTRKE---TVARIMGSADI 243 (767)
Q Consensus 176 ------~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~---~~~~gs~ilvTtR~~---~v~~~~~~~~~ 243 (767)
.+.--+.+.|.+..-.|=-.+|+|.+.+.. .+-+.+...+. .....-++||||-.- ..+...+....
T Consensus 446 T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERs-lNtDilfGllk~~larRrdlKliVtSATm~a~kf~nfFgn~p~ 524 (1042)
T KOG0924|consen 446 TKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERS-LNTDILFGLLKKVLARRRDLKLIVTSATMDAQKFSNFFGNCPQ 524 (1042)
T ss_pred eeEEEeccchHHHHHhhhhhhhheeEEEechhhhcc-cchHHHHHHHHHHHHhhccceEEEeeccccHHHHHHHhCCCce
Confidence 122223333333333445589999996543 23333333333 234567899999863 34445554444
Q ss_pred EecC
Q 035555 244 ISVN 247 (767)
Q Consensus 244 ~~l~ 247 (767)
+.++
T Consensus 525 f~Ip 528 (1042)
T KOG0924|consen 525 FTIP 528 (1042)
T ss_pred eeec
Confidence 4444
No 305
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.60 E-value=0.015 Score=59.73 Aligned_cols=51 Identities=27% Similarity=0.395 Sum_probs=44.9
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHc
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...|+|.++.+++|+..+...+.+.+..-+++.++|+-|.||||||..+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999887665677889999999999999999988755
No 306
>PRK06547 hypothetical protein; Provisional
Probab=95.56 E-value=0.018 Score=53.95 Aligned_cols=25 Identities=36% Similarity=0.383 Sum_probs=22.7
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...+|+|.|++|+||||+|+.+.+.
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999999764
No 307
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.52 E-value=0.027 Score=56.32 Aligned_cols=24 Identities=42% Similarity=0.457 Sum_probs=21.5
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
-..++|+|.+|+||||||+++++.
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~ 92 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINN 92 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHH
Confidence 347999999999999999999984
No 308
>PRK08233 hypothetical protein; Provisional
Probab=95.52 E-value=0.012 Score=56.13 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.7
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..+|+|.|.+|+||||+|..+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 469999999999999999999874
No 309
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.52 E-value=0.012 Score=57.57 Aligned_cols=25 Identities=40% Similarity=0.666 Sum_probs=22.7
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...+|+|.|.+|+||||||+.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999874
No 310
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.18 Score=56.45 Aligned_cols=157 Identities=17% Similarity=0.100 Sum_probs=84.4
Q ss_pred ccccchhHHHHHHHHH---hcCCCC----CCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhC
Q 035555 98 EIFGREKEKSELVNRL---LCESSK----EQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTY 170 (767)
Q Consensus 98 ~~vGr~~~~~~l~~~L---~~~~~~----~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~ 170 (767)
++.|.+...+.+.+.. ...... +-...+.+.++|++|.|||.||+++++. ....|-.+..- ++...
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~--~~~~fi~v~~~--~l~sk--- 315 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALE--SRSRFISVKGS--ELLSK--- 315 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhh--CCCeEEEeeCH--HHhcc---
Confidence 4555555555544443 222110 1235668999999999999999999993 33333220000 11110
Q ss_pred CCCCccchHHHHHHHHHhcCCCeEEEEEeCCCC-----cC------hhhHHHHHHhhhcC--CCCcEEEEEcCchhHHhh
Q 035555 171 SSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWN-----ED------FYKWEQFYNCLKTC--LHGSKILITTRKETVARI 237 (767)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-----~~------~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~ 237 (767)
.-......+........+..+..|++|.++. .. .....+++..+... ..+..||-||........
T Consensus 316 --~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~ 393 (494)
T COG0464 316 --WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDP 393 (494)
T ss_pred --ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCH
Confidence 1111223333444445567899999999842 11 12333444444322 233334444444322221
Q ss_pred ---h--cCcceEecCCCChhHHHHHHHHhcC
Q 035555 238 ---M--GSADIISVNVLSETECWLVFESLGF 263 (767)
Q Consensus 238 ---~--~~~~~~~l~~L~~~~~~~l~~~~~~ 263 (767)
. .-...+.++.-+.++..+.|..+.-
T Consensus 394 a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 394 ALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred hhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 1 1245788888899999999998864
No 311
>PTZ00301 uridine kinase; Provisional
Probab=95.49 E-value=0.011 Score=57.16 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.2
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+|+|.|.+|+||||||+.+.+
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHH
Confidence 347999999999999999988865
No 312
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.0005 Score=66.52 Aligned_cols=33 Identities=18% Similarity=0.117 Sum_probs=15.3
Q ss_pred CCccEEEEeccCCCCCCCCCCCCCCCCeeeecCC
Q 035555 616 TNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGM 649 (767)
Q Consensus 616 ~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~ 649 (767)
.+.+.|+.++| .+.++.....+|.|+.|.|+=|
T Consensus 19 ~~vkKLNcwg~-~L~DIsic~kMp~lEVLsLSvN 51 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDISICEKMPLLEVLSLSVN 51 (388)
T ss_pred HHhhhhcccCC-CccHHHHHHhcccceeEEeecc
Confidence 34444555544 3333333344555555555443
No 313
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.47 E-value=0.01 Score=46.03 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
+|+|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998873
No 314
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.45 E-value=0.012 Score=57.47 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=22.4
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...+|+|+|++|+||||||+.+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999863
No 315
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.44 E-value=0.039 Score=58.66 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=19.3
Q ss_pred EEEEEEccCCChHHHHHHHHH
Q 035555 125 CVISLVGMGGIGKTTLAQFAY 145 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~ 145 (767)
..++|+|++|+||||||+.+.
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lv 383 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLV 383 (580)
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 489999999999999999984
No 316
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.37 E-value=0.12 Score=51.13 Aligned_cols=116 Identities=20% Similarity=0.224 Sum_probs=65.6
Q ss_pred CEEEEEEccCCChHHHHHHHHHcccc--hhh-hhhh----------HHHHHHHHHHHhhCC------CCCccchHHHHH-
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNNDD--VKK-ILRK----------EYGIARAIIEALTYS------SSNFVEFQSLMQ- 183 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~~--~~~-~F~~----------~~~i~~~i~~~l~~~------~~~~~~~~~~~~- 183 (767)
..+++|+|.+|.||||+|+.+..=.+ -.. .|+. ..+...++++.++.. .+...+..+.++
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi 118 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRI 118 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhH
Confidence 35899999999999999999975311 000 1221 223344445544432 223333444433
Q ss_pred HHHHhcCCCeEEEEEeCCCCc-ChhhHHHHHHhhhcC--CCCcEEEEEcCchhHHhhhc
Q 035555 184 HIQKHVAGKKLLLVLDDVWNE-DFYKWEQFYNCLKTC--LHGSKILITTRKETVARIMG 239 (767)
Q Consensus 184 ~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~~~ 239 (767)
.+.+.+.-++-++|.|..-+. +...-.++...+..- ..|-..+..|-+-.++..+.
T Consensus 119 ~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 119 GIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred HHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 467788889999999986433 222223444444321 23455666666666665543
No 317
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.36 E-value=0.024 Score=50.03 Aligned_cols=40 Identities=28% Similarity=0.160 Sum_probs=29.1
Q ss_pred hHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 104 KEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 104 ~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
++..++.+.|...-. ...+|.+.|.-|.||||+++.+.+.
T Consensus 6 ~~t~~l~~~l~~~l~----~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPLD----FGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhCC----CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 445555555543321 3458999999999999999999874
No 318
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.11 Score=57.37 Aligned_cols=179 Identities=17% Similarity=0.082 Sum_probs=89.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchh-----hhhhhHHHHHHHHHHHhhC
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVK-----KILRKEYGIARAIIEALTY 170 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~-----~~F~~~~~i~~~i~~~l~~ 170 (767)
+.+|+--....++..+....+- ....-|.|.|+.|+|||+||+++++..... ..|++
T Consensus 407 e~d~i~~~s~kke~~n~~~spv----~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~C-------------- 468 (952)
T KOG0735|consen 407 EHDFIQVPSYKKENANQELSPV----FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSC-------------- 468 (952)
T ss_pred CCceeecchhhhhhhhhhcccc----cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEec--------------
Confidence 3556655555555555544432 245578999999999999999999853311 11222
Q ss_pred CCCCccchHH----HHHHHHHhcCCCeEEEEEeCCCC------cChhhHH----HHHHhh----h-cCCCCcE--EEEEc
Q 035555 171 SSSNFVEFQS----LMQHIQKHVAGKKLLLVLDDVWN------EDFYKWE----QFYNCL----K-TCLHGSK--ILITT 229 (767)
Q Consensus 171 ~~~~~~~~~~----~~~~l~~~l~~k~~LlVlDdv~~------~~~~~~~----~l~~~l----~-~~~~gs~--ilvTt 229 (767)
+.......+. +...+.+.+...+-++||||++- .+...|. .+...+ . ....+.+ +|.|.
T Consensus 469 s~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~ 548 (952)
T KOG0735|consen 469 STLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATG 548 (952)
T ss_pred hhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEec
Confidence 1111111222 22334455667899999999831 1111222 122222 1 1123444 33333
Q ss_pred Cchh-HHhhhc----CcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCC-CcchHHHHH
Q 035555 230 RKET-VARIMG----SADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKG-LPLVAKTIA 296 (767)
Q Consensus 230 R~~~-v~~~~~----~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~~ 296 (767)
.... +-..+. -...+.++.+...+-.++++... .... .....+...-+..+|+| .|..+.++-
T Consensus 549 qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~-s~~~---~~~~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 549 QELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIF-SKNL---SDITMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred hhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHH-Hhhh---hhhhhHHHHHHHHhcCCccchhHHHHH
Confidence 3211 111111 13466788888777777766543 2121 11122233447778876 455555444
No 319
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.34 E-value=0.015 Score=52.00 Aligned_cols=43 Identities=30% Similarity=0.325 Sum_probs=30.0
Q ss_pred EEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhC
Q 035555 126 VISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTY 170 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~ 170 (767)
+|.|.|++|+||||+|+.+.++.-.. |-..-.+.++|++..+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~vsaG~iFR~~A~e~gm 44 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--LVSAGTIFREMARERGM 44 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--eeeccHHHHHHHHHcCC
Confidence 68999999999999999998853222 11223455667666543
No 320
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.32 E-value=0.056 Score=57.01 Aligned_cols=104 Identities=16% Similarity=0.204 Sum_probs=60.5
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcccch----hhhhhh-HHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEE
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNNDDV----KKILRK-EYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLV 197 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~-~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlV 197 (767)
..+=+-|||.-|.|||.|+-.+|+...+ +-||.. ..++.+.+-+.- ..... ...+.+.+.++..+|.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~----~~~~~----l~~va~~l~~~~~lLc 132 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLR----GQDDP----LPQVADELAKESRLLC 132 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHh----CCCcc----HHHHHHHHHhcCCEEE
Confidence 5667999999999999999999986433 345655 333333333222 11112 2334445566677999
Q ss_pred EeCCCCcChhhHHHHHHhhhcC-CCCcEEEEEcCchhHH
Q 035555 198 LDDVWNEDFYKWEQFYNCLKTC-LHGSKILITTRKETVA 235 (767)
Q Consensus 198 lDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~ 235 (767)
||.+.-.+..+-.-+...|..- ..|. |||+|.|....
T Consensus 133 fDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~~P~ 170 (362)
T PF03969_consen 133 FDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNRPPE 170 (362)
T ss_pred EeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCCChH
Confidence 9998554443333344344322 4565 66666664433
No 321
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.29 E-value=0.059 Score=50.18 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=57.5
Q ss_pred EEEEEEccCCChHHHHHHHHHcccch-hh--hhhh--HHHH-HHHHHH-HhhCCCCCccchHHHHHHHHHhcCCCeEEEE
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNNDDV-KK--ILRK--EYGI-ARAIIE-ALTYSSSNFVEFQSLMQHIQKHVAGKKLLLV 197 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~~~~-~~--~F~~--~~~i-~~~i~~-~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlV 197 (767)
.+++|.|..|.|||||.+.++.-..- .. .|+. .... .....+ .++... .....+...-.+...+-.++-+++
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~-qLS~G~~qrl~laral~~~p~ill 105 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVY-QLSVGERQMVEIARALARNARLLI 105 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEE-ecCHHHHHHHHHHHHHhcCCCEEE
Confidence 48999999999999999999764110 11 0111 0000 000001 111000 122233333345566666788899
Q ss_pred EeCCCC-cChhhHHHHHHhhhcC-CCCcEEEEEcCchhH
Q 035555 198 LDDVWN-EDFYKWEQFYNCLKTC-LHGSKILITTRKETV 234 (767)
Q Consensus 198 lDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v 234 (767)
+|+.-. -|......+...+... ..|..||++|.+...
T Consensus 106 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 106 LDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 998743 2344445555555432 235568888877553
No 322
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.21 Score=54.33 Aligned_cols=178 Identities=19% Similarity=0.226 Sum_probs=91.4
Q ss_pred cccchhHHHHHHHHHhcCCCC-------CCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhH--HHHHHHHHHHhh
Q 035555 99 IFGREKEKSELVNRLLCESSK-------EQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKE--YGIARAIIEALT 169 (767)
Q Consensus 99 ~vGr~~~~~~l~~~L~~~~~~-------~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~--~~i~~~i~~~l~ 169 (767)
+=|-++...++...+..+-.. +-....=|.+||++|.|||-||++|+|. -+-.|-.+ .+++.. .++
T Consensus 513 IGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANE--ag~NFisVKGPELlNk---YVG 587 (802)
T KOG0733|consen 513 IGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANE--AGANFISVKGPELLNK---YVG 587 (802)
T ss_pred cccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhh--ccCceEeecCHHHHHH---Hhh
Confidence 344556666665555443211 1123456889999999999999999994 44444320 111110 111
Q ss_pred CCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCC-----cC------hhhHHHHHHhhhcC--CCCcEEEEEcCchhHHh
Q 035555 170 YSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWN-----ED------FYKWEQFYNCLKTC--LHGSKILITTRKETVAR 236 (767)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-----~~------~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~ 236 (767)
.....+....++.-..-++.|+||.++. .+ .-...+++..+... ..|--||-.|...++..
T Consensus 588 ------ESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiID 661 (802)
T KOG0733|consen 588 ------ESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIID 661 (802)
T ss_pred ------hHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccc
Confidence 1122222233333346789999999842 11 11233455554422 35555665565544432
Q ss_pred h--hcC---cceEecCCCChhHHHHHHHHhcCCCCCC-cchhhHHHHHHHHHhhcCCCc
Q 035555 237 I--MGS---ADIISVNVLSETECWLVFESLGFSGKSM-EERENLEKIGREIIRKCKGLP 289 (767)
Q Consensus 237 ~--~~~---~~~~~l~~L~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P 289 (767)
. +.. ....-++.-+.+|-.++++...-....+ ...-++.+||.. .+|.|.-
T Consensus 662 pAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 662 PAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred hhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 2 111 3455666667788888887765321221 233445555443 2454543
No 323
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.27 E-value=0.1 Score=48.66 Aligned_cols=107 Identities=13% Similarity=0.096 Sum_probs=57.6
Q ss_pred CEEEEEEccCCChHHHHHHHHHcccch-hh------------hhhh----HHHHHHHHHHHhhCCCCCccchHHHHHHHH
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNNDDV-KK------------ILRK----EYGIARAIIEALTYSSSNFVEFQSLMQHIQ 186 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~~~-~~------------~F~~----~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~ 186 (767)
-.+++|+|..|.|||||++.+..-... .. .++. ...+...+... ........+...-.+.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~la 103 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAFA 103 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHHH
Confidence 358999999999999999999764110 00 0000 01111221110 1222233333334455
Q ss_pred HhcCCCeEEEEEeCCCC-cChhhHHHHHHhhhcCCCCcEEEEEcCchhHH
Q 035555 187 KHVAGKKLLLVLDDVWN-EDFYKWEQFYNCLKTCLHGSKILITTRKETVA 235 (767)
Q Consensus 187 ~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 235 (767)
..+-.++-++++|+--. -|......+...+... +..||++|.+....
T Consensus 104 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 104 RLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 66666778889998632 2333444455555443 34577777766554
No 324
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.12 Score=53.15 Aligned_cols=26 Identities=31% Similarity=0.204 Sum_probs=22.4
Q ss_pred CCEEEEEEccCCChHHHHHHHHHccc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNND 148 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~~ 148 (767)
.=+-|..+|++|.|||-||++|+...
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 34568899999999999999999853
No 325
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.24 E-value=0.059 Score=50.71 Aligned_cols=104 Identities=14% Similarity=0.064 Sum_probs=54.7
Q ss_pred CEEEEEEccCCChHHHHHHHHHcccch-hh--hhhhHHHHHHHHHHHhhC--CCCCccchHHHHHHHHHhcCCCeEEEEE
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNNDDV-KK--ILRKEYGIARAIIEALTY--SSSNFVEFQSLMQHIQKHVAGKKLLLVL 198 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~~~-~~--~F~~~~~i~~~i~~~l~~--~~~~~~~~~~~~~~l~~~l~~k~~LlVl 198 (767)
-.+++|+|..|.|||||++.+..-... .. .|+.. .+.. ........+...-.+...+-.++-++++
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~---------~i~~~~q~~~LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI---------TPVYKPQYIDLSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE---------EEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 349999999999999999999763110 00 01110 0000 0001222333333455666677889999
Q ss_pred eCCCC-cChhhHHHHHHhhhcC--CCCcEEEEEcCchhHHh
Q 035555 199 DDVWN-EDFYKWEQFYNCLKTC--LHGSKILITTRKETVAR 236 (767)
Q Consensus 199 Ddv~~-~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~ 236 (767)
|+--. -+......+...+... ..+..||++|-+.....
T Consensus 96 DEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 98743 2333334444444332 12245666666654433
No 326
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.22 E-value=0.022 Score=56.44 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=22.8
Q ss_pred CCCEEEEEEccCCChHHHHHHHHHc
Q 035555 122 KGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 122 ~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
....+|+|.|+.|+|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999998876
No 327
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.21 E-value=0.053 Score=53.99 Aligned_cols=36 Identities=31% Similarity=0.272 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHc
Q 035555 107 SELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 107 ~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
..+.++|... =...+++.|+|.+|+|||++|.++..
T Consensus 12 ~~LD~~l~gG----~~~g~~~~i~G~~GsGKt~l~~~~~~ 47 (234)
T PRK06067 12 EELDRKLGGG----IPFPSLILIEGDHGTGKSVLSQQFVY 47 (234)
T ss_pred HHHHHhhCCC----CcCCcEEEEECCCCCChHHHHHHHHH
Confidence 4455555332 23567999999999999999988843
No 328
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.20 E-value=0.2 Score=54.16 Aligned_cols=25 Identities=44% Similarity=0.470 Sum_probs=22.1
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...+|.++|..|+||||+|..++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999888763
No 329
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.19 E-value=0.1 Score=49.19 Aligned_cols=112 Identities=15% Similarity=0.165 Sum_probs=56.7
Q ss_pred EEEEEEccCCChHHHHHHHHHcccch-hh--hhhh--HHHH-HHHHHHHhhCC--CCC----------ccchHHHHHHHH
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNNDDV-KK--ILRK--EYGI-ARAIIEALTYS--SSN----------FVEFQSLMQHIQ 186 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~~~~-~~--~F~~--~~~i-~~~i~~~l~~~--~~~----------~~~~~~~~~~l~ 186 (767)
.+++|+|..|.|||||.+.+..-..- .+ .|+. .... .....+.+... ... ....+...-.+.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~la 108 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGLA 108 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHHHH
Confidence 48999999999999999999763110 01 0111 0000 00111111110 000 111222233355
Q ss_pred HhcCCCeEEEEEeCCCC-cChhhHHHHHHhhhcC-CCCcEEEEEcCchhHHh
Q 035555 187 KHVAGKKLLLVLDDVWN-EDFYKWEQFYNCLKTC-LHGSKILITTRKETVAR 236 (767)
Q Consensus 187 ~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 236 (767)
..+-.++-++++|+.-. -|......+...+... ..|..||++|.+.....
T Consensus 109 ~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 109 RALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 55666677899998743 2333344444444332 23666888887765554
No 330
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.19 E-value=0.059 Score=60.34 Aligned_cols=129 Identities=15% Similarity=0.174 Sum_probs=72.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccc-hhhhhhh--HHHHHHHHHH-HhhCC
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDD-VKKILRK--EYGIARAIIE-ALTYS 171 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~--~~~i~~~i~~-~l~~~ 171 (767)
...++|+...+.++.+.+..-.. ....|.|+|..|+|||++|+.+++... -...|-. -..+....++ .+-+.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~ 261 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGH 261 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCc
Confidence 45799999999998888876543 345788999999999999999987422 1122221 0000011111 11111
Q ss_pred -CCCccch-HHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCC-----------CCcEEEEEcCc
Q 035555 172 -SSNFVEF-QSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCL-----------HGSKILITTRK 231 (767)
Q Consensus 172 -~~~~~~~-~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 231 (767)
....... ......+.. ...=.|+||++..-.......+...+..+. ...|||.||..
T Consensus 262 ~~g~~~ga~~~~~g~~~~---a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 262 VKGAFTGAISNRSGKFEL---ADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred cccccCCCcccCCcchhh---cCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 0000000 000001111 122347899998777777777887776432 24588888864
No 331
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.17 E-value=0.12 Score=54.35 Aligned_cols=79 Identities=18% Similarity=0.139 Sum_probs=43.7
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcccchh-h----------hhhh-HHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcC
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNNDDVK-K----------ILRK-EYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVA 190 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~~~~~-~----------~F~~-~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 190 (767)
...++.++|+.|+||||++.++......+ + .|.. ..+.++...+.++.+.....+..++...+.+ +.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LR 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hc
Confidence 35799999999999999998887632111 0 1111 2334444444544433333333344444433 34
Q ss_pred CCeEEEEEeCCCC
Q 035555 191 GKKLLLVLDDVWN 203 (767)
Q Consensus 191 ~k~~LlVlDdv~~ 203 (767)
++ -++++|..-.
T Consensus 215 ~~-DlVLIDTaG~ 226 (374)
T PRK14722 215 NK-HMVLIDTIGM 226 (374)
T ss_pred CC-CEEEEcCCCC
Confidence 44 4566998843
No 332
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.17 E-value=0.2 Score=48.82 Aligned_cols=61 Identities=11% Similarity=0.126 Sum_probs=35.9
Q ss_pred HHHhcCCCeEEEEEeCCCC-cChhhHHHHHHhhhcC-CCCcEEEEEcCchhHHhhhcCcceEecCC
Q 035555 185 IQKHVAGKKLLLVLDDVWN-EDFYKWEQFYNCLKTC-LHGSKILITTRKETVARIMGSADIISVNV 248 (767)
Q Consensus 185 l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~~~~~~~~~~l~~ 248 (767)
+...+-.++-++++|+--. -|......+...+... ..|..||++|.+...... ...+.++.
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~ 200 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGP 200 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecC
Confidence 4455556678999998643 2344445555555432 346668888887654433 45566654
No 333
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.16 E-value=0.15 Score=49.35 Aligned_cols=113 Identities=21% Similarity=0.224 Sum_probs=58.6
Q ss_pred CEEEEEEccCCChHHHHHHHHHccc--c-hhh--hhhh-------HHHHHHH-H--------------HHH-hhCCCCCc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNND--D-VKK--ILRK-------EYGIARA-I--------------IEA-LTYSSSNF 175 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~--~-~~~--~F~~-------~~~i~~~-i--------------~~~-l~~~~~~~ 175 (767)
-.+++|+|..|.|||||.+.+.... . ..+ .|+. .....+. + ... +.......
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~~~~L 105 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVNEGF 105 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhccccC
Confidence 3599999999999999999987741 0 111 0110 0000000 0 000 00000112
Q ss_pred cchHHHHHHHHHhcCCCeEEEEEeCCCC-cChhhHHHHHHhhhcC-CCCcEEEEEcCchhHHh
Q 035555 176 VEFQSLMQHIQKHVAGKKLLLVLDDVWN-EDFYKWEQFYNCLKTC-LHGSKILITTRKETVAR 236 (767)
Q Consensus 176 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 236 (767)
...+...-.+...+-.++-++++|+.-. -|......+...+... ..|..||++|.+.....
T Consensus 106 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 106 SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 2233333345566666778999998742 2334444555554432 23566888887766554
No 334
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.13 E-value=0.27 Score=46.72 Aligned_cols=114 Identities=19% Similarity=0.233 Sum_probs=64.0
Q ss_pred CEEEEEEccCCChHHHHHHHHHccc------------chh-------------hhhhh----------------------
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNND------------DVK-------------KILRK---------------------- 156 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~------------~~~-------------~~F~~---------------------- 156 (767)
-.+|+|+|++|+|||||.+.+..=. .+. -.|..
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~ 107 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKK 107 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcC
Confidence 3499999999999999999884310 010 11111
Q ss_pred -----HHHHHHHHHHHhhCC-----CC-CccchHHHHHHHHHhcCCCeEEEEEeCCCCc-ChhhHHHHHHhhhc-CCCCc
Q 035555 157 -----EYGIARAIIEALTYS-----SS-NFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE-DFYKWEQFYNCLKT-CLHGS 223 (767)
Q Consensus 157 -----~~~i~~~i~~~l~~~-----~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs 223 (767)
..+.....++.++.. .+ .....++-.-.|.+.|.-++-++.+|..-+. |++-...+...... ...|-
T Consensus 108 ~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGm 187 (240)
T COG1126 108 LSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGM 187 (240)
T ss_pred CCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCC
Confidence 333444445544432 12 2234455555688888888889999998443 33333333333332 23455
Q ss_pred EEEEEcCchhHHhh
Q 035555 224 KILITTRKETVARI 237 (767)
Q Consensus 224 ~ilvTtR~~~v~~~ 237 (767)
..++.|-.-..|..
T Consensus 188 TMivVTHEM~FAr~ 201 (240)
T COG1126 188 TMIIVTHEMGFARE 201 (240)
T ss_pred eEEEEechhHHHHH
Confidence 55666665444443
No 335
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.11 E-value=0.23 Score=48.41 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=31.1
Q ss_pred HHHhcCCCeEEEEEeCCCC-cChhhHHHHHHhhhcCCCCcEEEEEcCchhHHh
Q 035555 185 IQKHVAGKKLLLVLDDVWN-EDFYKWEQFYNCLKTCLHGSKILITTRKETVAR 236 (767)
Q Consensus 185 l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 236 (767)
+...+-.++-++++|+... -+......+...+.....|..||++|.+.+...
T Consensus 136 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~ 188 (207)
T cd03369 136 LARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTII 188 (207)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 4445555677889998743 234444555555554334666777777765543
No 336
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.09 E-value=0.18 Score=54.07 Aligned_cols=52 Identities=29% Similarity=0.290 Sum_probs=36.5
Q ss_pred CCccccchhHHHHHHHHHhc------C--CCCCC----CCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 96 ESEIFGREKEKSELVNRLLC------E--SSKEQ----KGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~------~--~~~~~----~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...++|.++.++.+...+.. . ....+ .....|.++|++|+|||++|+.+...
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~ 139 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARI 139 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHh
Confidence 34589999999988766521 0 00000 12357999999999999999999863
No 337
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.04 E-value=0.11 Score=50.64 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.|+|+|++|.|||||-+.+.-
T Consensus 30 EfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999853
No 338
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.02 E-value=0.07 Score=49.74 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=18.3
Q ss_pred EEEEccCCChHHHHHHHHHcc
Q 035555 127 ISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 127 v~I~G~gGiGKTtLa~~v~~~ 147 (767)
+.|.|.+|+|||++|.++...
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~ 22 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE 22 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999888653
No 339
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=95.01 E-value=0.085 Score=50.54 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=36.2
Q ss_pred cchHHHHHHHHHhcCCCeEEEEEeCCCCc-ChhhHHHHHHhhhcC--CCCcEEEEEcCchhHHhhh
Q 035555 176 VEFQSLMQHIQKHVAGKKLLLVLDDVWNE-DFYKWEQFYNCLKTC--LHGSKILITTRKETVARIM 238 (767)
Q Consensus 176 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~~ 238 (767)
...++-.-.+.+.|-.++-+|+||.-... .+.-..++...+..- ..|-.|++.-.+-..+..+
T Consensus 138 SGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~i 203 (237)
T COG0410 138 SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEI 203 (237)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHh
Confidence 33444455567778888899999986432 222333344444322 2254688777776655443
No 340
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.01 E-value=0.17 Score=48.71 Aligned_cols=22 Identities=23% Similarity=0.105 Sum_probs=20.1
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
++++|+|+.|.|||||.+.+.-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 6999999999999999988864
No 341
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.98 E-value=0.097 Score=59.30 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.9
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.-..++|+|+.|.|||||++.+..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 445899999999999999999854
No 342
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.96 E-value=0.22 Score=48.98 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.6
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|+|+.|.|||||++.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTG 50 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 34899999999999999999864
No 343
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.91 E-value=0.059 Score=48.58 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.5
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
..+|.|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 57999999999999999977765
No 344
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.90 E-value=1 Score=46.25 Aligned_cols=131 Identities=11% Similarity=0.085 Sum_probs=81.2
Q ss_pred CCEEEEEEccCCChHHHHHHHHHccc---c---hhh-hhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhc----C-
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNND---D---VKK-ILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHV----A- 190 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~~---~---~~~-~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~- 190 (767)
-.+...++|..|+||+++|..+.+.. . +.. ..+. . ...+. ........+++.+.+...- .
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~--n-----~~~~d-~~g~~i~vd~Ir~l~~~~~~~~~~~ 88 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPA--N-----IILFD-IFDKDLSKSEFLSAINKLYFSSFVQ 88 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCc--c-----eEEec-cCCCcCCHHHHHHHHHHhccCCccc
Confidence 45678899999999999998886631 0 000 0000 0 00000 0011122344443333221 1
Q ss_pred CCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCc-hhHH-hhhcCcceEecCCCChhHHHHHHHHh
Q 035555 191 GKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRK-ETVA-RIMGSADIISVNVLSETECWLVFESL 261 (767)
Q Consensus 191 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~-~~~~~~~~~~l~~L~~~~~~~l~~~~ 261 (767)
+++-++|+|++..........+...+..-.+.+.+|++|.+ ..+. +....+..+++.+++.++..+.+...
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc
Confidence 57788999999777767778888888887777777765544 3433 33455789999999999998877654
No 345
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.87 E-value=0.0032 Score=58.47 Aligned_cols=68 Identities=19% Similarity=0.386 Sum_probs=47.7
Q ss_pred ccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCccccCCC-cCCCCCCCCcEEEecCCCchh
Q 035555 671 VIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALP-DLLLQKTTLQKLHIWGGCPIF 743 (767)
Q Consensus 671 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~sL~~L~l~~~c~~l 743 (767)
+..+++++.|.+.+|..+.+|....... ..|+|+.|+|++|+.+++-- .++..+++|+.|.| .+-|.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~----~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l-~~l~~v 189 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGG----LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL-YDLPYV 189 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcc----cccchheeeccCCCeechhHHHHHHHhhhhHHHHh-cCchhh
Confidence 3467778888888888888877543222 56888888888888877532 34566788888888 666644
No 346
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.82 E-value=0.024 Score=54.27 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=21.9
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...+|.|+|++|+||||+|+.+...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999999753
No 347
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.80 E-value=0.17 Score=50.87 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.4
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.|.++|++|+||||+|+++...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999998764
No 348
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.79 E-value=0.018 Score=33.12 Aligned_cols=19 Identities=32% Similarity=0.775 Sum_probs=10.3
Q ss_pred ccEEeecCCccccccchhhc
Q 035555 468 LKYLNLSSQKKIKRLPETLC 487 (767)
Q Consensus 468 L~~L~L~~~~~~~~lp~~~~ 487 (767)
|++|+|++|. ++.+|++++
T Consensus 2 L~~Ldls~n~-l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNN-LTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSE-ESEEGTTTT
T ss_pred ccEEECCCCc-CEeCChhhc
Confidence 5556666654 555555443
No 349
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.77 E-value=0.088 Score=59.03 Aligned_cols=47 Identities=19% Similarity=0.128 Sum_probs=35.9
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.+++|....+.++++.+..-.. ....|.|+|..|+||+++|++++..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHh
Confidence 4689998888888777754322 2235889999999999999998653
No 350
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.76 E-value=0.32 Score=46.06 Aligned_cols=39 Identities=23% Similarity=0.375 Sum_probs=27.5
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHH
Q 035555 99 IFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAY 145 (767)
Q Consensus 99 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~ 145 (767)
++|-...++.+-=-+ ....|.++.|++|.||||+.+.+-
T Consensus 16 yYg~~~aL~~i~l~i--------~~~~VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 16 YYGDKHALKDINLDI--------PKNKVTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred EECchhhhccCceec--------cCCceEEEECCCCcCHHHHHHHHH
Confidence 566555554443222 255799999999999999998873
No 351
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=94.75 E-value=0.22 Score=48.24 Aligned_cols=59 Identities=20% Similarity=0.218 Sum_probs=34.2
Q ss_pred chHHHHHHHHHhcCCCeEEEEEeCCCC-cChhhHHHHHHhhhc---C-CCCcEEEEEcCchhHH
Q 035555 177 EFQSLMQHIQKHVAGKKLLLVLDDVWN-EDFYKWEQFYNCLKT---C-LHGSKILITTRKETVA 235 (767)
Q Consensus 177 ~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~---~-~~gs~ilvTtR~~~v~ 235 (767)
..++..-.|.+.|-.++-|||||.--+ -|...-+.+...+.. . +..+.|+||-..+++.
T Consensus 174 ~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~ 237 (257)
T COG1119 174 QGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIP 237 (257)
T ss_pred HhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcc
Confidence 344445556777778899999998633 233333344444442 2 2335677777766654
No 352
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.75 E-value=0.098 Score=60.14 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=35.0
Q ss_pred HHHhcCCCeEEEEEeCCCC-cChhhHHHHHHhhhcC-CCCcEEEEEcCchhHHhhhcCcceEecC
Q 035555 185 IQKHVAGKKLLLVLDDVWN-EDFYKWEQFYNCLKTC-LHGSKILITTRKETVARIMGSADIISVN 247 (767)
Q Consensus 185 l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~~~~~~~~~~l~ 247 (767)
|.+.+=.++-+++||+.-+ -|...-..+...+... ...+.|+||.|...+. ....++.++
T Consensus 496 lARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~---~aD~Iivl~ 557 (588)
T PRK11174 496 LARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLA---QWDQIWVMQ 557 (588)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHH---hCCEEEEEe
Confidence 4444445677899999743 2344445555555543 3457788888865443 234455553
No 353
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.75 E-value=0.18 Score=47.48 Aligned_cols=113 Identities=19% Similarity=0.179 Sum_probs=58.8
Q ss_pred CEEEEEEccCCChHHHHHHHHHcccc-hhhh--hhh--HHHHHHHHHHHhhC--CCC----C--------ccchHHHHHH
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNNDD-VKKI--LRK--EYGIARAIIEALTY--SSS----N--------FVEFQSLMQH 184 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~~-~~~~--F~~--~~~i~~~i~~~l~~--~~~----~--------~~~~~~~~~~ 184 (767)
-.+++|+|..|.|||||++.++.... ..+. |+. ...........+.. ... . ....+...-.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~ 105 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLA 105 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHHH
Confidence 35899999999999999999976411 0110 111 00000111111110 000 0 1112222234
Q ss_pred HHHhcCCCeEEEEEeCCCC-cChhhHHHHHHhhhcC-CCCcEEEEEcCchhHHh
Q 035555 185 IQKHVAGKKLLLVLDDVWN-EDFYKWEQFYNCLKTC-LHGSKILITTRKETVAR 236 (767)
Q Consensus 185 l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 236 (767)
+...+-.++-++++|+.-. -|......+...+... ..|..||++|.+.....
T Consensus 106 laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 106 LAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 5666677888999999743 2334444455555432 23666888888765443
No 354
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.74 E-value=0.34 Score=48.19 Aligned_cols=61 Identities=11% Similarity=0.165 Sum_probs=34.7
Q ss_pred HHHHhcCCCeEEEEEeCCCC-cChhhHHHHHHhhhcCCCCcEEEEEcCchhHHhhhcCcceEec
Q 035555 184 HIQKHVAGKKLLLVLDDVWN-EDFYKWEQFYNCLKTCLHGSKILITTRKETVARIMGSADIISV 246 (767)
Q Consensus 184 ~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l 246 (767)
.|...+-.++-++++|+.-. -|......+...+.....|..||++|.+...... ....+.+
T Consensus 148 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~v~~l 209 (234)
T cd03251 148 AIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN--ADRIVVL 209 (234)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh--CCEEEEe
Confidence 34445555667899998733 2344445555555543345668888877655443 3344444
No 355
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.73 E-value=0.34 Score=52.32 Aligned_cols=42 Identities=38% Similarity=0.400 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCCC---CCCCCEEEEEEccCCChHHHHHHHHHc
Q 035555 105 EKSELVNRLLCESSK---EQKGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 105 ~~~~l~~~L~~~~~~---~~~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
..++|.+.+...... ....+.++.++|.+|+||||+|..++.
T Consensus 77 v~~eL~~~l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 77 VHEELVAILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred HHHHHHHHhCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHH
Confidence 344555655432210 123468999999999999999866654
No 356
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.73 E-value=0.38 Score=46.68 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.6
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|+|..|.|||||++.++.
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G 49 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAG 49 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999864
No 357
>PRK10867 signal recognition particle protein; Provisional
Probab=94.73 E-value=0.35 Score=52.30 Aligned_cols=24 Identities=46% Similarity=0.569 Sum_probs=20.2
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+|.++|++|+||||+|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999997766654
No 358
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.72 E-value=0.19 Score=49.29 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.|.|+|++|+||||+|+.+...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998764
No 359
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.72 E-value=0.021 Score=53.79 Aligned_cols=25 Identities=44% Similarity=0.457 Sum_probs=22.4
Q ss_pred CEEEEEEccCCChHHHHHHHHHccc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNND 148 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~ 148 (767)
..+|+|-||-|+||||||+.+.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999998853
No 360
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.71 E-value=0.055 Score=46.84 Aligned_cols=47 Identities=21% Similarity=0.407 Sum_probs=32.5
Q ss_pred ccccchhHHHH----HHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 98 EIFGREKEKSE----LVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 98 ~~vGr~~~~~~----l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.++|..-..+. |...+.+. ....+-|++.+|.+|+|||.+|+.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~---~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP---NPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC---CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 35565544444 44444433 2446789999999999999999888764
No 361
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.71 E-value=0.53 Score=42.83 Aligned_cols=83 Identities=16% Similarity=0.143 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhCC-----CC-CccchHHHHHHHHHhcCCCeEEEEEeCC----CCcChhhHHHHHHhhhcCCCCcEEE
Q 035555 157 EYGIARAIIEALTYS-----SS-NFVEFQSLMQHIQKHVAGKKLLLVLDDV----WNEDFYKWEQFYNCLKTCLHGSKIL 226 (767)
Q Consensus 157 ~~~i~~~i~~~l~~~-----~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv----~~~~~~~~~~l~~~l~~~~~gs~il 226 (767)
.....+..+++++.. .+ .....++-.-.|.+.+...+-+|+-|.- +...-....++.-.+. ...|+..+
T Consensus 123 ~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~ln-re~G~TlV 201 (228)
T COG4181 123 SRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALN-RERGTTLV 201 (228)
T ss_pred HHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHh-hhcCceEE
Confidence 334455556665532 11 2234445555677888888888888864 2222222333333332 25677777
Q ss_pred EEcCchhHHhhhcC
Q 035555 227 ITTRKETVARIMGS 240 (767)
Q Consensus 227 vTtR~~~v~~~~~~ 240 (767)
+.|-++.++..|..
T Consensus 202 lVTHD~~LA~Rc~R 215 (228)
T COG4181 202 LVTHDPQLAARCDR 215 (228)
T ss_pred EEeCCHHHHHhhhh
Confidence 77888888877654
No 362
>PRK04040 adenylate kinase; Provisional
Probab=94.71 E-value=0.025 Score=53.88 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.+|+|+|++|+||||+++.+.+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999998774
No 363
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=0.071 Score=59.45 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=32.7
Q ss_pred HHHHHhcCCCeEEEEEeCCCCc-ChhhHHHHHHhhhcC-CCCcEEEEEcCchhHH
Q 035555 183 QHIQKHVAGKKLLLVLDDVWNE-DFYKWEQFYNCLKTC-LHGSKILITTRKETVA 235 (767)
Q Consensus 183 ~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~ 235 (767)
-.|.+.|=.++..||||++-+. |.+.-..+...+... ...+.|+|+-|-..|.
T Consensus 613 IAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~ 667 (716)
T KOG0058|consen 613 IAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVR 667 (716)
T ss_pred HHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhh
Confidence 3466777778889999998432 122222344445322 3367888888876654
No 364
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=94.70 E-value=0.058 Score=53.39 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.4
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.-.++.|+|.+|+|||++|.+++.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~ 45 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAV 45 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999988865
No 365
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.66 E-value=0.096 Score=52.68 Aligned_cols=36 Identities=25% Similarity=0.165 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHc
Q 035555 107 SELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 107 ~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
+.|.+.|...- ....+.=|+|.+|+|||+||.+++-
T Consensus 25 ~~lD~~L~GGi----~~g~itEi~G~~gsGKTql~l~l~~ 60 (256)
T PF08423_consen 25 KSLDELLGGGI----PTGSITEIVGESGSGKTQLCLQLAV 60 (256)
T ss_dssp HHHHHHTTSSE----ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhCCCC----CCCcEEEEEEecccccchHHHHHHH
Confidence 34555553321 2446999999999999999977753
No 366
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.65 E-value=0.037 Score=50.61 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
+|.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999988774
No 367
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.65 E-value=0.02 Score=55.35 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=19.4
Q ss_pred EEEEEccCCChHHHHHHHHHc
Q 035555 126 VISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~ 146 (767)
+|+|.|.+|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 368
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.64 E-value=0.33 Score=48.45 Aligned_cols=52 Identities=12% Similarity=0.264 Sum_probs=31.4
Q ss_pred HHHhcCCCeEEEEEeCCCC-cChhhHHHHHHhhhcCCCCcEEEEEcCchhHHh
Q 035555 185 IQKHVAGKKLLLVLDDVWN-EDFYKWEQFYNCLKTCLHGSKILITTRKETVAR 236 (767)
Q Consensus 185 l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 236 (767)
+...+-.++-++++|+... -|......+...+.....|..||++|.+.+...
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~ 201 (237)
T cd03252 149 IARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK 201 (237)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 3444445667999999743 234444455555544334667888888766554
No 369
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.63 E-value=0.034 Score=54.10 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=35.6
Q ss_pred ccccccCCcccEEeecCCccccccc----hhhcCCCCCcEEEccCCcccc
Q 035555 459 PTNIEKLIHLKYLNLSSQKKIKRLP----ETLCELYNLECLAISFCTNLR 504 (767)
Q Consensus 459 p~~~~~l~~L~~L~L~~~~~~~~lp----~~~~~l~~L~~L~L~~~~~l~ 504 (767)
.+.+-+|++|+..+||.|.+-...| +.+++-++|.+|.+++|. +.
T Consensus 85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lG 133 (388)
T COG5238 85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LG 133 (388)
T ss_pred HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CC
Confidence 3566789999999999998544444 447788999999999987 44
No 370
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.62 E-value=0.4 Score=47.24 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.4
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|+|..|.|||||++.+..
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999864
No 371
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.62 E-value=0.15 Score=53.21 Aligned_cols=82 Identities=18% Similarity=0.078 Sum_probs=45.0
Q ss_pred CCCEEEEEEccCCChHHHHHHHHHcccchhh---------hhhh-HHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcC-
Q 035555 122 KGPCVISLVGMGGIGKTTLAQFAYNNDDVKK---------ILRK-EYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVA- 190 (767)
Q Consensus 122 ~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~---------~F~~-~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~- 190 (767)
.+.+++.++|+.|+||||++..++.....+. .|.. ....++..++.++.+.....+..++...+...-.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV 283 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence 3578999999999999999988765321111 1111 2223333444443322222345555554443321
Q ss_pred CCeEEEEEeCCCC
Q 035555 191 GKKLLLVLDDVWN 203 (767)
Q Consensus 191 ~k~~LlVlDdv~~ 203 (767)
+..=++++|-.-.
T Consensus 284 ~~~D~VLIDTAGr 296 (407)
T PRK12726 284 NCVDHILIDTVGR 296 (407)
T ss_pred CCCCEEEEECCCC
Confidence 3346788888744
No 372
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.61 E-value=0.036 Score=51.53 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.8
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+++|+|..|+|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 567999999999999999998876
No 373
>PRK05439 pantothenate kinase; Provisional
Probab=94.60 E-value=0.049 Score=55.80 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.4
Q ss_pred CCCEEEEEEccCCChHHHHHHHHHc
Q 035555 122 KGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 122 ~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
....+|+|.|.+|+||||+|+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999988865
No 374
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.60 E-value=0.018 Score=49.86 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=17.9
Q ss_pred EEEEccCCChHHHHHHHHHcccchhhhhh
Q 035555 127 ISLVGMGGIGKTTLAQFAYNNDDVKKILR 155 (767)
Q Consensus 127 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 155 (767)
|.|+|.+|+||||+|++++. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999987 3444444
No 375
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.59 E-value=0.26 Score=48.49 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.5
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|.|+.|.|||||++.+..
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G 52 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAG 52 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35999999999999999998864
No 376
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.59 E-value=0.28 Score=48.90 Aligned_cols=52 Identities=15% Similarity=0.251 Sum_probs=31.1
Q ss_pred HHHhcCCCeEEEEEeCCCC-cChhhHHHHHHhhhcCCCCcEEEEEcCchhHHh
Q 035555 185 IQKHVAGKKLLLVLDDVWN-EDFYKWEQFYNCLKTCLHGSKILITTRKETVAR 236 (767)
Q Consensus 185 l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 236 (767)
+...+-.++-++++|+... -+......+...+.....|..||++|.+.+...
T Consensus 150 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~ 202 (238)
T cd03249 150 IARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR 202 (238)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 4444555667999998743 234444555555543335666888887765554
No 377
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.59 E-value=0.027 Score=56.89 Aligned_cols=23 Identities=35% Similarity=0.257 Sum_probs=18.0
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
+.|.|.|.+|+||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 47899999999999999998773
No 378
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.58 E-value=0.022 Score=53.94 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 379
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.56 E-value=0.027 Score=53.51 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.++.|+|++|+||||||+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998764
No 380
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.56 E-value=0.097 Score=56.32 Aligned_cols=50 Identities=28% Similarity=0.294 Sum_probs=35.6
Q ss_pred CccccchhHHHHHHHHHhcC----CC------CCCCCCEEEEEEccCCChHHHHHHHHHc
Q 035555 97 SEIFGREKEKSELVNRLLCE----SS------KEQKGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~----~~------~~~~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
..++|.++.++.+...+... .. +.....+.|.++|++|+|||++|+.++.
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999886655211 00 0011235689999999999999999986
No 381
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.55 E-value=0.049 Score=55.38 Aligned_cols=25 Identities=36% Similarity=0.504 Sum_probs=21.3
Q ss_pred CCCEEEEEEccCCChHHHHHHHHHc
Q 035555 122 KGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 122 ~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
....+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999976643
No 382
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.55 E-value=0.021 Score=55.99 Aligned_cols=21 Identities=29% Similarity=0.465 Sum_probs=19.3
Q ss_pred EEEEEccCCChHHHHHHHHHc
Q 035555 126 VISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~ 146 (767)
+|+|.|..|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999988876
No 383
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.54 E-value=0.014 Score=56.65 Aligned_cols=85 Identities=22% Similarity=0.121 Sum_probs=55.5
Q ss_pred CCCCCcEEEccCCccccccCcccccCcCCcEeeCCCC--CCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCC
Q 035555 488 ELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYT--NSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLI 565 (767)
Q Consensus 488 ~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~--~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~ 565 (767)
.+.+|+.|.+.++. +..+ ..+-.|++|+.|.++.| +....++.-...+++|++|++..+.+.. ...+..++.+.
T Consensus 41 ~~~~le~ls~~n~g-ltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVG-LTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELE 116 (260)
T ss_pred cccchhhhhhhccc-eeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhc
Confidence 45666777666665 3322 13446889999999988 3344555555666889988877666654 44556666667
Q ss_pred CCCCeeeeCCC
Q 035555 566 LLRECRIHGLG 576 (767)
Q Consensus 566 ~L~~L~i~~l~ 576 (767)
+|..|.+.+|.
T Consensus 117 nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 117 NLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCC
Confidence 77776666654
No 384
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.54 E-value=0.21 Score=52.36 Aligned_cols=95 Identities=21% Similarity=0.187 Sum_probs=51.3
Q ss_pred CCEEEEEEccCCChHHHH-HHHHHcccchh----------hhhhh-HHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcC
Q 035555 123 GPCVISLVGMGGIGKTTL-AQFAYNNDDVK----------KILRK-EYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVA 190 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtL-a~~v~~~~~~~----------~~F~~-~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 190 (767)
+.++|.++|+.|+||||. |+..++-.... ..|.. ..+-++..++-++.+-....+.+++...+... +
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l-~ 280 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL-R 280 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-h
Confidence 478999999999999875 44433311011 11222 33334444555555544445555555555443 3
Q ss_pred CCeEEEEEeCCCC--cChhhHHHHHHhhhcC
Q 035555 191 GKKLLLVLDDVWN--EDFYKWEQFYNCLKTC 219 (767)
Q Consensus 191 ~k~~LlVlDdv~~--~~~~~~~~l~~~l~~~ 219 (767)
+. =++.+|-+-. .+.....++...+...
T Consensus 281 ~~-d~ILVDTaGrs~~D~~~i~el~~~~~~~ 310 (407)
T COG1419 281 DC-DVILVDTAGRSQYDKEKIEELKELIDVS 310 (407)
T ss_pred cC-CEEEEeCCCCCccCHHHHHHHHHHHhcc
Confidence 33 3555676643 2345556676666654
No 385
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.53 E-value=0.1 Score=56.96 Aligned_cols=24 Identities=42% Similarity=0.372 Sum_probs=20.9
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+|+|+|++|+||||++..+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999977765
No 386
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.53 E-value=0.41 Score=47.14 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=20.8
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.-.+++|+|+.|.|||||++.+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 345999999999999999998854
No 387
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.52 E-value=0.31 Score=49.01 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.5
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|+|..|.|||||++.+..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14247 29 NTITALMGPSGSGKSTLLRVFNR 51 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999864
No 388
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.50 E-value=0.029 Score=52.91 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.6
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...|.|+|++|+||||+|+.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999884
No 389
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.49 E-value=0.1 Score=53.87 Aligned_cols=81 Identities=21% Similarity=0.180 Sum_probs=45.6
Q ss_pred CCCEEEEEEccCCChHHHHHHHHHcccch----hhhhhhHHHHHHHHHHHhhCCC-----CCccchHHHHHHHHHhcC-C
Q 035555 122 KGPCVISLVGMGGIGKTTLAQFAYNNDDV----KKILRKEYGIARAIIEALTYSS-----SNFVEFQSLMQHIQKHVA-G 191 (767)
Q Consensus 122 ~~~~~v~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~~i~~~i~~~l~~~~-----~~~~~~~~~~~~l~~~l~-~ 191 (767)
+.-+++-|+|++|+||||||.++...... .-.|+.........++.++... ......++....+...++ +
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~ 132 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSG 132 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcc
Confidence 35679999999999999999877553211 1122222222223344443321 111234455555555554 4
Q ss_pred CeEEEEEeCCC
Q 035555 192 KKLLLVLDDVW 202 (767)
Q Consensus 192 k~~LlVlDdv~ 202 (767)
..-++|+|.|-
T Consensus 133 ~~~lIVIDSv~ 143 (321)
T TIGR02012 133 AVDIIVVDSVA 143 (321)
T ss_pred CCcEEEEcchh
Confidence 56689999973
No 390
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.47 E-value=0.26 Score=47.71 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.6
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|+|..|.|||||++.+..
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G 55 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALAN 55 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhcc
Confidence 35999999999999999998865
No 391
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.47 E-value=0.19 Score=51.21 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.4
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|+|..|.|||||.+.++.
T Consensus 30 Ge~~~IvG~nGsGKSTLl~~L~g 52 (275)
T cd03289 30 GQRVGLLGRTGSGKSTLLSAFLR 52 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 34899999999999999999864
No 392
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.46 E-value=0.54 Score=50.53 Aligned_cols=24 Identities=38% Similarity=0.382 Sum_probs=21.0
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+|.++|+.|+||||+|..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999977753
No 393
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.44 E-value=0.17 Score=48.87 Aligned_cols=112 Identities=16% Similarity=0.149 Sum_probs=57.0
Q ss_pred CEEEEEEccCCChHHHHHHHHHcccc---hhhhhhh---HHHHHHHHHHHhhCCCCCc-------cchHHHHHHHHHhcC
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNNDD---VKKILRK---EYGIARAIIEALTYSSSNF-------VEFQSLMQHIQKHVA 190 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~~---~~~~F~~---~~~i~~~i~~~l~~~~~~~-------~~~~~~~~~l~~~l~ 190 (767)
.+++.|.|+.|.||||+.+.+..-.- ......+ ...+...|...+...+... .+..++...+ . +.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il-~-~~ 106 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL-D-YA 106 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHHHHHHHH-H-hc
Confidence 36899999999999999988854210 0000011 1111122222222211111 1112222111 1 23
Q ss_pred CCeEEEEEeCCCCcC-hhh----HHHHHHhhhcCCCCcEEEEEcCchhHHhhhc
Q 035555 191 GKKLLLVLDDVWNED-FYK----WEQFYNCLKTCLHGSKILITTRKETVARIMG 239 (767)
Q Consensus 191 ~k~~LlVlDdv~~~~-~~~----~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~ 239 (767)
.++-|+++|...... ..+ ...+...+.. .|+.+|+||-+.+++..+.
T Consensus 107 ~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 107 DGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred CCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 567899999974321 111 1223333333 3778999999988877654
No 394
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.44 E-value=0.028 Score=50.74 Aligned_cols=21 Identities=48% Similarity=0.463 Sum_probs=18.9
Q ss_pred EEEEccCCChHHHHHHHHHcc
Q 035555 127 ISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 127 v~I~G~gGiGKTtLa~~v~~~ 147 (767)
|.++|++|+|||+||+.++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999998863
No 395
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.43 E-value=0.13 Score=53.17 Aligned_cols=79 Identities=23% Similarity=0.200 Sum_probs=43.6
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcccch----hhhhhhHHHHHHHHHHHhhCCC-----CCccchHHHHHHHHHhcC-CC
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNNDDV----KKILRKEYGIARAIIEALTYSS-----SNFVEFQSLMQHIQKHVA-GK 192 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~~i~~~i~~~l~~~~-----~~~~~~~~~~~~l~~~l~-~k 192 (767)
.-+++-|+|++|+||||||.+++-.... .-.++....+....++.++... ....+.++....+...++ +.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~ 133 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGA 133 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccC
Confidence 5679999999999999999887643111 1111221112223333333210 111234455555555544 45
Q ss_pred eEEEEEeCC
Q 035555 193 KLLLVLDDV 201 (767)
Q Consensus 193 ~~LlVlDdv 201 (767)
.-++|+|.|
T Consensus 134 ~~lIVIDSv 142 (325)
T cd00983 134 VDLIVVDSV 142 (325)
T ss_pred CCEEEEcch
Confidence 668999997
No 396
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=94.43 E-value=0.12 Score=60.83 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=20.3
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-..|+|+|..|+|||||++.+..
T Consensus 500 G~~vaIvG~SGsGKSTLlklL~g 522 (708)
T TIGR01193 500 NSKTTIVGMSGSGKSTLAKLLVG 522 (708)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999998854
No 397
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.43 E-value=0.07 Score=52.07 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.4
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+++.|+|+-|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47899999999999999988863
No 398
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.42 E-value=0.036 Score=52.40 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.0
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...+|.|+|++|+||||+|+++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3459999999999999999998874
No 399
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.41 E-value=0.004 Score=60.50 Aligned_cols=59 Identities=29% Similarity=0.226 Sum_probs=32.5
Q ss_pred ccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCc--ccccCcCCcEeeCCCC
Q 035555 463 EKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQ--GIGKLRKLMYLDNDYT 524 (767)
Q Consensus 463 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~--~~~~l~~L~~L~l~~~ 524 (767)
.+|+.|++|.|+-|+ |+.+.. +..|++|+.|+|+.|. +..+-+ .+.++++|+.|-|..|
T Consensus 38 ~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccC
Confidence 356666666666666 555533 5556666666666655 433322 2455555555555555
No 400
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.46 Score=52.80 Aligned_cols=184 Identities=17% Similarity=0.132 Sum_probs=91.7
Q ss_pred CCCCccccchhHHHH---HHHHHhcCCCC---CCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHH
Q 035555 94 IDESEIFGREKEKSE---LVNRLLCESSK---EQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEA 167 (767)
Q Consensus 94 ~~~~~~vGr~~~~~~---l~~~L~~~~~~---~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~ 167 (767)
..-.++-|.|+.+++ +++.|.++... +..-++-|.++|++|.|||.||+++.....+-..+-.- .+..+.
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSG----S~FVem 222 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISG----SDFVEM 222 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccc----hhhhhh
Confidence 445578898775555 55555544321 12346778999999999999999999865543322110 011111
Q ss_pred hhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCc----------ChhhHHH----HHHhhhcCC--CCcEEEEEcCc
Q 035555 168 LTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE----------DFYKWEQ----FYNCLKTCL--HGSKILITTRK 231 (767)
Q Consensus 168 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~~~----l~~~l~~~~--~gs~ilvTtR~ 231 (767)
+-+ .......+...+..++-++.+++|.++-- ....+++ +......++ .|-.|+-.|..
T Consensus 223 fVG-----vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNR 297 (596)
T COG0465 223 FVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNR 297 (596)
T ss_pred hcC-----CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCC
Confidence 110 11122223344555666899999977321 1223333 333333333 23223323333
Q ss_pred hhHHhhh-----cCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcch
Q 035555 232 ETVARIM-----GSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLV 291 (767)
Q Consensus 232 ~~v~~~~-----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 291 (767)
.+|.... .-...+.++.-+...-.++++-++-...- ...-+ ...|++.+-|.--|
T Consensus 298 pdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l-~~~Vd----l~~iAr~tpGfsGA 357 (596)
T COG0465 298 PDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPL-AEDVD----LKKIARGTPGFSGA 357 (596)
T ss_pred cccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCC-CCcCC----HHHHhhhCCCcccc
Confidence 4443221 11456666655656666666644321111 11122 22377777666544
No 401
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.40 E-value=0.032 Score=52.75 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
++|.+.|++|+||||+|+++...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999874
No 402
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.39 E-value=0.068 Score=50.87 Aligned_cols=42 Identities=33% Similarity=0.348 Sum_probs=31.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHc
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+++|.+..+..+.-.... ..-|.++|++|+|||++|+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 4688998888887766653 24699999999999999999853
No 403
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.39 E-value=0.39 Score=46.86 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=19.6
Q ss_pred EEEEEccCCChHHHHHHHHHc
Q 035555 126 VISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~ 146 (767)
+++|+|+.|.|||||++.++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999864
No 404
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.36 E-value=0.026 Score=53.84 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.9
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
+|.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999774
No 405
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.52 Score=49.89 Aligned_cols=153 Identities=15% Similarity=0.087 Sum_probs=79.1
Q ss_pred EEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE 204 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 204 (767)
|=-.++|++|.|||+++.++++.-... .++. . -....+-.+ .++|-..- ..+-+||+.|++-.
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~yd-IydL------------e--Lt~v~~n~d-Lr~LL~~t-~~kSIivIEDIDcs 298 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLNYD-IYDL------------E--LTEVKLDSD-LRHLLLAT-PNKSILLIEDIDCS 298 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcCCc-eEEe------------e--eccccCcHH-HHHHHHhC-CCCcEEEEeecccc
Confidence 456789999999999999999842210 1111 0 001111222 22222222 34556666776311
Q ss_pred --------C----------hhhHHHHHHhhhcC---CCCcEEEE-EcCchhH---HhhhcC--cceEecCCCChhHHHHH
Q 035555 205 --------D----------FYKWEQFYNCLKTC---LHGSKILI-TTRKETV---ARIMGS--ADIISVNVLSETECWLV 257 (767)
Q Consensus 205 --------~----------~~~~~~l~~~l~~~---~~gs~ilv-TtR~~~v---~~~~~~--~~~~~l~~L~~~~~~~l 257 (767)
+ .....-++..+..- ..+-|||| ||...+- |-.... .-.+.+.-=+.+.-..|
T Consensus 299 ~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~L 378 (457)
T KOG0743|consen 299 FDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTL 378 (457)
T ss_pred cccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHH
Confidence 0 01222344443311 11346665 5544322 222211 44677888889999999
Q ss_pred HHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHHhHHhc
Q 035555 258 FESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIASLLRS 301 (767)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~ 301 (767)
+.++..... . ..++.+|.+...+.-+.=..++..+-.
T Consensus 379 a~nYL~~~~---~----h~L~~eie~l~~~~~~tPA~V~e~lm~ 415 (457)
T KOG0743|consen 379 ASNYLGIEE---D----HRLFDEIERLIEETEVTPAQVAEELMK 415 (457)
T ss_pred HHHhcCCCC---C----cchhHHHHHHhhcCccCHHHHHHHHhh
Confidence 999874322 1 123556666666666666666655433
No 406
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.33 E-value=0.052 Score=57.37 Aligned_cols=51 Identities=25% Similarity=0.345 Sum_probs=37.5
Q ss_pred CccccchhHHHHHHHHHhcC--------CCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 97 SEIFGREKEKSELVNRLLCE--------SSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..++|.++.++.+...+... .-......+.|.++|++|+|||++|+.+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999988887777642 0001123467899999999999999999763
No 407
>PRK06217 hypothetical protein; Validated
Probab=94.32 E-value=0.029 Score=53.40 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=20.2
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.|.|.|.+|+||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 408
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.32 E-value=0.028 Score=51.53 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=19.8
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
+|.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999875
No 409
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.31 E-value=0.064 Score=49.08 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 104 KEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 104 ~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
+.+++|.+.|.. +++.++|.+|+|||||+..+..+
T Consensus 24 ~g~~~l~~~l~~---------k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG---------KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT---------SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC---------CEEEEECCCCCCHHHHHHHHHhh
Confidence 457888888842 58999999999999999999885
No 410
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.30 E-value=0.46 Score=49.24 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=31.2
Q ss_pred HHHHhcCCCeEEEEEeCCCC-cChhhHHHHHHhhhcCCCCcEEEEEcCchhHH
Q 035555 184 HIQKHVAGKKLLLVLDDVWN-EDFYKWEQFYNCLKTCLHGSKILITTRKETVA 235 (767)
Q Consensus 184 ~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 235 (767)
.+...+-.++-+++||.--. -|...-..+...+.....+..||+||.+.+..
T Consensus 143 ~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~ 195 (301)
T TIGR03522 143 GLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEV 195 (301)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHH
Confidence 34556667788999998643 23333444444444333356688888886543
No 411
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.29 E-value=0.062 Score=52.66 Aligned_cols=38 Identities=34% Similarity=0.445 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHc
Q 035555 105 EKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 105 ~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
+..++++.+.... .+..+|+|.|++|+|||||..++..
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~ 51 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIR 51 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHH
Confidence 4556666666543 3678999999999999999977765
No 412
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.28 E-value=0.22 Score=46.90 Aligned_cols=21 Identities=52% Similarity=0.585 Sum_probs=18.7
Q ss_pred EEEEEccCCChHHHHHHHHHc
Q 035555 126 VISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~ 146 (767)
++.++|++|+||||++..++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999988765
No 413
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.28 E-value=0.19 Score=57.80 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=20.2
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-..++|+|..|.|||||++.+..
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999988853
No 414
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=94.27 E-value=0.41 Score=47.05 Aligned_cols=49 Identities=22% Similarity=0.218 Sum_probs=31.6
Q ss_pred CCeEEEEEeCCCCc-ChhhHHHHHHhhhcCCCCcEEEEEcCchhHHhhhc
Q 035555 191 GKKLLLVLDDVWNE-DFYKWEQFYNCLKTCLHGSKILITTRKETVARIMG 239 (767)
Q Consensus 191 ~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~ 239 (767)
+..-++|||||... |......+...+......+.+||||-++.+...+.
T Consensus 157 ~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~ 206 (220)
T PF02463_consen 157 KPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDAD 206 (220)
T ss_dssp S--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-S
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34558999999643 44556667777776666788999999888776553
No 415
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.27 E-value=0.034 Score=50.60 Aligned_cols=20 Identities=35% Similarity=0.690 Sum_probs=18.5
Q ss_pred EEEEEccCCChHHHHHHHHH
Q 035555 126 VISLVGMGGIGKTTLAQFAY 145 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~ 145 (767)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999886
No 416
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.26 E-value=0.12 Score=53.48 Aligned_cols=35 Identities=20% Similarity=0.098 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHH
Q 035555 107 SELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAY 145 (767)
Q Consensus 107 ~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~ 145 (767)
..|.++|... =..-+++-|+|++|+|||+|+.+++
T Consensus 83 ~~LD~lLgGG----i~~G~iteI~G~~GsGKTql~lqla 117 (313)
T TIGR02238 83 QALDGILGGG----IESMSITEVFGEFRCGKTQLSHTLC 117 (313)
T ss_pred HHHHHHhCCC----CcCCeEEEEECCCCCCcCHHHHHHH
Confidence 4455555432 2356799999999999999998765
No 417
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.26 E-value=0.035 Score=52.78 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
++|+|+|+.|+||||||+.+.+.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 48999999999999999999884
No 418
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.24 E-value=0.03 Score=53.03 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=19.8
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988763
No 419
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=94.23 E-value=0.13 Score=60.45 Aligned_cols=58 Identities=19% Similarity=0.255 Sum_probs=33.8
Q ss_pred HHHhcCCCeEEEEEeCCCCc-ChhhHHHHHHhhhcCCCCcEEEEEcCchhHHhhhcCcceEec
Q 035555 185 IQKHVAGKKLLLVLDDVWNE-DFYKWEQFYNCLKTCLHGSKILITTRKETVARIMGSADIISV 246 (767)
Q Consensus 185 l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l 246 (767)
|.+.+-.++-+++||+.-+. |...-..+...+.. ...+.|+||-|...+.. ...++.+
T Consensus 626 LARall~~p~iliLDEptS~LD~~te~~i~~~l~~-~~~T~IiitHrl~~i~~---~D~Iivl 684 (710)
T TIGR03796 626 IARALVRNPSILILDEATSALDPETEKIIDDNLRR-RGCTCIIVAHRLSTIRD---CDEIIVL 684 (710)
T ss_pred HHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh-cCCEEEEEecCHHHHHh---CCEEEEE
Confidence 44555566778899997542 33333445555654 34677888888654432 3444444
No 420
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.23 E-value=0.44 Score=47.21 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=31.3
Q ss_pred HHHHhcCCCeEEEEEeCCCC-cChhhHHHHHHhhhcCCCCcEEEEEcCchhHHh
Q 035555 184 HIQKHVAGKKLLLVLDDVWN-EDFYKWEQFYNCLKTCLHGSKILITTRKETVAR 236 (767)
Q Consensus 184 ~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 236 (767)
.|...+-.++-++++|+-.. -|......+...+.....|..||++|.+.....
T Consensus 149 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 202 (229)
T cd03254 149 AIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK 202 (229)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh
Confidence 34455566778999998743 233344445555543334566778777765544
No 421
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.22 E-value=0.15 Score=56.73 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=36.9
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..++|+...+.++.+.+..-.. ....|.|+|.+|+|||++|+.+++.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~----~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSR----SSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhc----cCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 3589998888888777654332 3446889999999999999999875
No 422
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.22 E-value=0.17 Score=59.33 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.3
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-..|+|+|..|.|||||++.+..
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999998854
No 423
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.19 E-value=0.38 Score=49.27 Aligned_cols=53 Identities=15% Similarity=0.079 Sum_probs=31.8
Q ss_pred HHHHhcCCCeEEEEEeCCCCc-ChhhHHHHHHhhhcC--CCCcEEEEEcCchhHHh
Q 035555 184 HIQKHVAGKKLLLVLDDVWNE-DFYKWEQFYNCLKTC--LHGSKILITTRKETVAR 236 (767)
Q Consensus 184 ~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~ 236 (767)
.|...+-.++-++++|+.-.. |...-..+...+... ..|..||++|.+.+...
T Consensus 150 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~ 205 (279)
T PRK13650 150 AIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA 205 (279)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 355566667789999997432 333444455555432 23666878777765544
No 424
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=94.18 E-value=0.36 Score=52.03 Aligned_cols=59 Identities=15% Similarity=0.085 Sum_probs=37.5
Q ss_pred chHHHHHHHHHhcCCCeEEEEEeCCCCc-ChhhHHHHHHhhhcCCCCcEEEEEcCchhHHh
Q 035555 177 EFQSLMQHIQKHVAGKKLLLVLDDVWNE-DFYKWEQFYNCLKTCLHGSKILITTRKETVAR 236 (767)
Q Consensus 177 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 236 (767)
........|.+.|-.++.||.||+--+. |.+.-.-+..+|.....+ .++|++|+++...
T Consensus 224 gGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln 283 (614)
T KOG0927|consen 224 GGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLN 283 (614)
T ss_pred chHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhh
Confidence 3445555677777788999999997432 222223355666655444 5889999876543
No 425
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.18 E-value=0.63 Score=47.01 Aligned_cols=120 Identities=15% Similarity=0.064 Sum_probs=62.3
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchh-h--hhhh----HHHHHHHHHHHhhCCCCCc---
Q 035555 106 KSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVK-K--ILRK----EYGIARAIIEALTYSSSNF--- 175 (767)
Q Consensus 106 ~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~-~--~F~~----~~~i~~~i~~~l~~~~~~~--- 175 (767)
.+.+...+... .....++|+|+.|.|||||.+.+.....-. . .|+. ..+-..++......-....
T Consensus 98 ~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~ 172 (270)
T TIGR02858 98 ADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGI 172 (270)
T ss_pred HHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccc
Confidence 44444555432 134689999999999999999998742110 0 1111 1111123332222111100
Q ss_pred -----cchHHHHHHHHHhcC-CCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCchhHHh
Q 035555 176 -----VEFQSLMQHIQKHVA-GKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKETVAR 236 (767)
Q Consensus 176 -----~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 236 (767)
..... ..-+...+. ..+-++++|.+-. ...+..+...+. .|..||+||-+..+..
T Consensus 173 r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 173 RTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred cccccccchH-HHHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 01111 111222222 4788999999843 344555555553 4677999998765543
No 426
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.18 E-value=0.07 Score=56.46 Aligned_cols=52 Identities=23% Similarity=0.348 Sum_probs=38.2
Q ss_pred CCccccchhHHHHHHHHHhcC--------CCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 96 ESEIFGREKEKSELVNRLLCE--------SSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...++|.++.++.+..++... ........+.|.++|++|+|||++|+.+...
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999998888541 0000112467899999999999999988763
No 427
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.17 E-value=0.38 Score=47.91 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=32.8
Q ss_pred HHHHhcCCCeEEEEEeCCCC-cChhhHHHHHHhhhcCCCCcEEEEEcCchhHHhh
Q 035555 184 HIQKHVAGKKLLLVLDDVWN-EDFYKWEQFYNCLKTCLHGSKILITTRKETVARI 237 (767)
Q Consensus 184 ~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 237 (767)
.|...+-.++-++++|+... -+......+...+.....|..||++|.+......
T Consensus 147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 201 (236)
T cd03253 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN 201 (236)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 34556666778999999743 2334445555555443236668888877655543
No 428
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.16 E-value=0.023 Score=32.62 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=13.6
Q ss_pred CCcEEEccCCccccccCccccc
Q 035555 491 NLECLAISFCTNLRQLPQGIGK 512 (767)
Q Consensus 491 ~L~~L~L~~~~~l~~lp~~~~~ 512 (767)
+|++|+|++|. ++.+|..+++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 46777777775 5567765543
No 429
>PRK02496 adk adenylate kinase; Provisional
Probab=94.12 E-value=0.25 Score=47.05 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.+.|+|++|+||||+|+.+...
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~ 24 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEH 24 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998763
No 430
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.12 E-value=0.37 Score=47.82 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.0
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
-.+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 26 GEFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 359999999999999999998653
No 431
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.11 E-value=0.041 Score=53.58 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...+|+|+|++|+||||||+.++..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3468999999999999999999874
No 432
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=94.11 E-value=0.16 Score=59.64 Aligned_cols=24 Identities=42% Similarity=0.541 Sum_probs=20.9
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.-..++|+|+.|.|||||++.+..
T Consensus 506 ~Ge~vaIvG~SGsGKSTLl~lL~g 529 (711)
T TIGR00958 506 PGEVVALVGPSGSGKSTVAALLQN 529 (711)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345899999999999999998854
No 433
>PRK09354 recA recombinase A; Provisional
Probab=94.11 E-value=0.15 Score=53.10 Aligned_cols=81 Identities=21% Similarity=0.181 Sum_probs=45.0
Q ss_pred CCCEEEEEEccCCChHHHHHHHHHcccchh----hhhhhHHHHHHHHHHHhhCCC-----CCccchHHHHHHHHHhcC-C
Q 035555 122 KGPCVISLVGMGGIGKTTLAQFAYNNDDVK----KILRKEYGIARAIIEALTYSS-----SNFVEFQSLMQHIQKHVA-G 191 (767)
Q Consensus 122 ~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~~i~~~i~~~l~~~~-----~~~~~~~~~~~~l~~~l~-~ 191 (767)
+.-+++-|+|++|+||||||.+++...... -.++....+....++.++... ......++....+...++ +
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~ 137 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSG 137 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcC
Confidence 356799999999999999998876432111 112221222223344443221 111234455555555554 4
Q ss_pred CeEEEEEeCCC
Q 035555 192 KKLLLVLDDVW 202 (767)
Q Consensus 192 k~~LlVlDdv~ 202 (767)
..-++|+|.|-
T Consensus 138 ~~~lIVIDSva 148 (349)
T PRK09354 138 AVDLIVVDSVA 148 (349)
T ss_pred CCCEEEEeChh
Confidence 56689999983
No 434
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=94.09 E-value=0.4 Score=47.78 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.4
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|+|..|.|||||.+.+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G 48 (237)
T TIGR00968 26 GSLVALLGPSGSGKSTLLRIIAG 48 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35999999999999999998864
No 435
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.08 E-value=0.11 Score=60.07 Aligned_cols=48 Identities=21% Similarity=0.183 Sum_probs=37.3
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
-+.++|....+.++.+.+..-.. ....|.|+|..|+||+++|+++++.
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAK----SSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCcCHHHHHHHHHHh
Confidence 34688998888888877765432 2334889999999999999999874
No 436
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.06 E-value=0.45 Score=48.59 Aligned_cols=25 Identities=28% Similarity=0.214 Sum_probs=21.0
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...++.|.|.+|+||||+|.++...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3458899999999999999887654
No 437
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.05 E-value=0.1 Score=51.30 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.8
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.|.|.|++|+||||+|+.+...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999774
No 438
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.05 E-value=0.052 Score=49.49 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=22.1
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+|.+.|.+|+||||+|.+++.
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~ 45 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEE 45 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHH
Confidence 567999999999999999999987
No 439
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.03 E-value=0.078 Score=59.68 Aligned_cols=49 Identities=22% Similarity=0.261 Sum_probs=37.4
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 95 DESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.++..+-|.+..+.|.+...... ....+|.|+|++|+||||+|+.++..
T Consensus 367 ~pP~~f~rpeV~~iL~~~~~~r~----~~g~~Ivl~Gl~GSGKSTia~~La~~ 415 (568)
T PRK05537 367 EIPEWFSFPEVVAELRRTYPPRH----KQGFTVFFTGLSGAGKSTIAKALMVK 415 (568)
T ss_pred CCChhhcHHHHHHHHHHHhcccc----CCCeEEEEECCCCChHHHHHHHHHHH
Confidence 44556788888887666654433 24568999999999999999999874
No 440
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.02 E-value=0.51 Score=48.42 Aligned_cols=52 Identities=17% Similarity=0.143 Sum_probs=31.7
Q ss_pred HHHhcCCCeEEEEEeCCCCc-ChhhHHHHHHhhhcC--CCCcEEEEEcCchhHHh
Q 035555 185 IQKHVAGKKLLLVLDDVWNE-DFYKWEQFYNCLKTC--LHGSKILITTRKETVAR 236 (767)
Q Consensus 185 l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~ 236 (767)
|...+-.++=++++|+-... |......+...+... ..|..||++|.+.+...
T Consensus 154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~ 208 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN 208 (282)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 44555566789999997532 444455555555432 23666888887765554
No 441
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=94.01 E-value=0.25 Score=56.03 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=20.8
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.-..++|+|..|.|||||++.+..
T Consensus 347 ~G~~~~ivG~sGsGKSTL~~ll~g 370 (529)
T TIGR02857 347 PGERVALVGPSGAGKSTLLNLLLG 370 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999998854
No 442
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=94.00 E-value=0.17 Score=59.26 Aligned_cols=49 Identities=20% Similarity=0.277 Sum_probs=29.8
Q ss_pred HHHhcCCCeEEEEEeCCCCc-ChhhHHHHHHhhhcCCCCcEEEEEcCchhH
Q 035555 185 IQKHVAGKKLLLVLDDVWNE-DFYKWEQFYNCLKTCLHGSKILITTRKETV 234 (767)
Q Consensus 185 l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v 234 (767)
|.+.+-.++-+++||+.-+. |...-..+...+... ..+.|+||.|.+.+
T Consensus 599 lARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~-~~T~IiItHr~~~i 648 (686)
T TIGR03797 599 IARALVRKPRILLFDEATSALDNRTQAIVSESLERL-KVTRIVIAHRLSTI 648 (686)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh-CCeEEEEecChHHH
Confidence 44555566778899998432 333334455555543 35778888886554
No 443
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.00 E-value=0.59 Score=58.28 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.6
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..+-|.++|++|.|||.||++++.+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHh
Confidence 4567889999999999999999986
No 444
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.00 E-value=0.055 Score=45.65 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=20.0
Q ss_pred CEEEEEEccCCChHHHHHHHHH
Q 035555 124 PCVISLVGMGGIGKTTLAQFAY 145 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~ 145 (767)
-..++|+|++|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999976
No 445
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=93.98 E-value=0.24 Score=56.68 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=20.6
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
....++|+|+.|.|||||++.+..
T Consensus 360 ~G~~~~ivG~sGsGKSTL~~ll~g 383 (585)
T TIGR01192 360 AGQTVAIVGPTGAGKTTLINLLQR 383 (585)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcc
Confidence 345899999999999999998853
No 446
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.96 E-value=0.41 Score=46.28 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.4
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.-++.++.|..|.||||.-+.+..
T Consensus 27 ~G~i~GllG~NGAGKTTtfRmILg 50 (300)
T COG4152 27 PGEIFGLLGPNGAGKTTTFRMILG 50 (300)
T ss_pred CCeEEEeecCCCCCccchHHHHhc
Confidence 457999999999999999999854
No 447
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.95 E-value=0.45 Score=45.73 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.2
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
-.+++|.|+.|.|||||.+.+..-
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998763
No 448
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.95 E-value=0.036 Score=50.54 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.9
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
+|.|.|++|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 449
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.95 E-value=0.3 Score=45.28 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=34.5
Q ss_pred HHHHHHhcCCCeE-EEEEeCCC---CcChhhHHHHHHhhhcCCCCcEEEEEcCch
Q 035555 182 MQHIQKHVAGKKL-LLVLDDVW---NEDFYKWEQFYNCLKTCLHGSKILITTRKE 232 (767)
Q Consensus 182 ~~~l~~~l~~k~~-LlVlDdv~---~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 232 (767)
.+..++.+...+| ++|||.+- +......+.+...+.....+..||+|-|+.
T Consensus 86 ~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 86 WQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 3444555554444 99999982 112345567778887777788999999984
No 450
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.94 E-value=0.1 Score=51.33 Aligned_cols=24 Identities=17% Similarity=0.037 Sum_probs=20.7
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
..+++.|+|+.|.||||+.+.+.-
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 456999999999999999988753
No 451
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.94 E-value=0.44 Score=47.59 Aligned_cols=21 Identities=38% Similarity=0.453 Sum_probs=18.2
Q ss_pred EEEEEccCCChHHHHHHHHHc
Q 035555 126 VISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~ 146 (767)
+..|+|++|+|||+||.+++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999988763
No 452
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.93 E-value=0.13 Score=54.22 Aligned_cols=105 Identities=10% Similarity=0.071 Sum_probs=54.9
Q ss_pred EEEEEEccCCChHHHHHHHHHcccch--hhh---hhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEe
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNNDDV--KKI---LRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLD 199 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~~~~--~~~---F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlD 199 (767)
..|.|.|+.|+||||+.+.+.+...- ..+ +....+....-...+-.......+.....+.++..++..+=.+++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 58999999999999999987763110 010 1111111100000000000001112345666788888889999999
Q ss_pred CCCCcChhhHHHHHHhhhcCCCCcEEEEEcCchhH
Q 035555 200 DVWNEDFYKWEQFYNCLKTCLHGSKILITTRKETV 234 (767)
Q Consensus 200 dv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v 234 (767)
.+.+. +.+...... ...|..|+.|.-..+.
T Consensus 203 Eird~--~~~~~~l~a---a~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 203 EMRDL--ETVELALTA---AETGHLVFGTLHTNSA 232 (343)
T ss_pred CCCCH--HHHHHHHHH---HHcCCcEEEEEcCCCH
Confidence 99643 444433332 2345556655554433
No 453
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.93 E-value=0.053 Score=52.38 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=22.0
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+|+|+|++|+||||||+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999877
No 454
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=93.93 E-value=2.4 Score=41.01 Aligned_cols=50 Identities=26% Similarity=0.311 Sum_probs=36.1
Q ss_pred ccccc-hhHHHHHHHHHhcCCCC-------CCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 98 EIFGR-EKEKSELVNRLLCESSK-------EQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 98 ~~vGr-~~~~~~l~~~L~~~~~~-------~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
+++|+ ++.+++|.+.+.-+... +-.+++-|.++|++|.|||-||++|+++
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh 204 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 204 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh
Confidence 35665 77777777766432210 1235667889999999999999999986
No 455
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=93.93 E-value=0.13 Score=47.24 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=17.6
Q ss_pred EEccCCChHHHHHHHHHcc
Q 035555 129 LVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 129 I~G~gGiGKTtLa~~v~~~ 147 (767)
|+|++|+||||+|+.++..
T Consensus 1 i~G~PgsGK~t~~~~la~~ 19 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKR 19 (151)
T ss_dssp EEESTTSSHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHh
Confidence 6899999999999999885
No 456
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.92 E-value=0.046 Score=49.19 Aligned_cols=22 Identities=41% Similarity=0.434 Sum_probs=20.2
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
++|.|+|..|+|||||++.+.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999988
No 457
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.91 E-value=0.53 Score=46.06 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=20.5
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|+|..|.|||||++.+..
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Confidence 34899999999999999999864
No 458
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=93.91 E-value=0.75 Score=42.44 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.8
Q ss_pred CEEEEEEccCCChHHHHHHHHH
Q 035555 124 PCVISLVGMGGIGKTTLAQFAY 145 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~ 145 (767)
-.+|+|.|++|.|||||-..|+
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIA 46 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIA 46 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHH
Confidence 4589999999999999998885
No 459
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.90 E-value=0.041 Score=51.77 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=20.1
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999885
No 460
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=0.42 Score=46.44 Aligned_cols=95 Identities=17% Similarity=0.206 Sum_probs=54.9
Q ss_pred CccccchhHHHHHHHHHhcCCCC-------CCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhh
Q 035555 97 SEIFGREKEKSELVNRLLCESSK-------EQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALT 169 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~ 169 (767)
+++-|=.+.+++|.+...-+--+ +-...+-|.++|++|.|||-+|++|+|. ....|-.+ +-.++.+.--
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanr--tdacfirv--igselvqkyv 252 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANR--TDACFIRV--IGSELVQKYV 252 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcc--cCceEEee--hhHHHHHHHh
Confidence 45667788888887765432110 1234567889999999999999999994 33333220 0111111110
Q ss_pred CCCCCccchHHHHHHHHHhcCC-CeEEEEEeCC
Q 035555 170 YSSSNFVEFQSLMQHIQKHVAG-KKLLLVLDDV 201 (767)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv 201 (767)
-+...+++.|.+.-+. |-+++++|.+
T Consensus 253 ------gegarmvrelf~martkkaciiffdei 279 (435)
T KOG0729|consen 253 ------GEGARMVRELFEMARTKKACIIFFDEI 279 (435)
T ss_pred ------hhhHHHHHHHHHHhcccceEEEEeecc
Confidence 1123344445555554 5578888877
No 461
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.88 E-value=0.055 Score=52.59 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=22.4
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..++|.|+|++|+|||||++.+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 6688999999999999999999763
No 462
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=93.86 E-value=0.14 Score=56.98 Aligned_cols=47 Identities=17% Similarity=0.307 Sum_probs=37.8
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.+++|....++++.+.+..-.. ....|.|.|..|+||+++|+.+++.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~----s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYAR----SSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCCCHHHHHHHHHHh
Confidence 4589999988888888754332 3346899999999999999999874
No 463
>PRK13947 shikimate kinase; Provisional
Probab=93.85 E-value=0.042 Score=51.71 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.|.|+|++|+||||+|+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
No 464
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=93.84 E-value=0.21 Score=51.89 Aligned_cols=144 Identities=19% Similarity=0.222 Sum_probs=77.9
Q ss_pred cccchhHHHHHHHHHhcCCCC-----------CCCCCEEEEEEccCCChHHHHHHHHHcccc------------------
Q 035555 99 IFGREKEKSELVNRLLCESSK-----------EQKGPCVISLVGMGGIGKTTLAQFAYNNDD------------------ 149 (767)
Q Consensus 99 ~vGr~~~~~~l~~~L~~~~~~-----------~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~------------------ 149 (767)
..|-..++..|.+.+.....- .-...-++.|+|.+|+||||+.+++.....
T Consensus 373 ~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~ 452 (593)
T COG2401 373 IKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPK 452 (593)
T ss_pred cccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccc
Confidence 455566777777766432110 012345899999999999999988854211
Q ss_pred ----------hhhhhh---------h---HHHHHHHHHHHhhCCC--------CCccchHHHHHHHHHhcCCCeEEEEEe
Q 035555 150 ----------VKKILR---------K---EYGIARAIIEALTYSS--------SNFVEFQSLMQHIQKHVAGKKLLLVLD 199 (767)
Q Consensus 150 ----------~~~~F~---------~---~~~i~~~i~~~l~~~~--------~~~~~~~~~~~~l~~~l~~k~~LlVlD 199 (767)
+...|. . .....-.|++..+.++ .+..+.+.-..+|.+.+..+.-+++.|
T Consensus 453 nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 453 NTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred cchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 011121 0 1112223333333221 122344555567888888888899999
Q ss_pred CCCCc-ChhhHHHHHHhhhcC--CCCcEEEEEcCchhHHhhhcCcc
Q 035555 200 DVWNE-DFYKWEQFYNCLKTC--LHGSKILITTRKETVARIMGSAD 242 (767)
Q Consensus 200 dv~~~-~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~~~~~~ 242 (767)
..... |...-..+...+..- ..|+.+++.|+.+++.+.+....
T Consensus 533 EF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~ 578 (593)
T COG2401 533 EFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDT 578 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCce
Confidence 87321 111222233333322 24666666666677777665443
No 465
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.84 E-value=0.066 Score=54.31 Aligned_cols=34 Identities=38% Similarity=0.430 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 107 SELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 107 ~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..+++.+... .+-|.++|+.|+|||++++.....
T Consensus 23 ~~ll~~l~~~-------~~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 23 SYLLDLLLSN-------GRPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHHHHHHHHC-------TEEEEEESSTTSSHHHHHHHHHHC
T ss_pred HHHHHHHHHc-------CCcEEEECCCCCchhHHHHhhhcc
Confidence 4455656543 357899999999999999988753
No 466
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.83 E-value=0.058 Score=51.29 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=22.6
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..++|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 5679999999999999999999874
No 467
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=1 Score=43.68 Aligned_cols=57 Identities=25% Similarity=0.320 Sum_probs=40.3
Q ss_pred ccccchhHHHHHHHHHhcCCCC-------CCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhh
Q 035555 98 EIFGREKEKSELVNRLLCESSK-------EQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK 156 (767)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 156 (767)
++-|-++.++++++.+.-+-.. +-..++-|..+|++|.|||-+|++.+. +....|-.
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa--qT~aTFLK 235 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA--QTNATFLK 235 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH--hccchHHH
Confidence 4567888999998877543221 123456788999999999999999887 34444443
No 468
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.28 Score=55.01 Aligned_cols=97 Identities=15% Similarity=0.171 Sum_probs=55.6
Q ss_pred CccccchhHHHHHHHHHhcCCC------CCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhh-HHHHHHHHHHHhh
Q 035555 97 SEIFGREKEKSELVNRLLCESS------KEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK-EYGIARAIIEALT 169 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~~i~~~i~~~l~ 169 (767)
.++=|-++.+..|.+-+.-+-. .+-....=|.++|++|.|||-+|++|+....... +.. -.+++.. .++
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~F-lSVKGPELLNM---YVG 747 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNF-LSVKGPELLNM---YVG 747 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeE-EeecCHHHHHH---Hhc
Confidence 4567888888888876643211 0112244688999999999999999998533211 111 0111111 111
Q ss_pred CCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCC
Q 035555 170 YSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWN 203 (767)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 203 (767)
...+.+.+...++-..+++.|+||.+++
T Consensus 748 ------qSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 748 ------QSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred ------chHHHHHHHHHHhhccCCeEEEeccccc
Confidence 1222333333344446899999999854
No 469
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.82 E-value=0.043 Score=49.35 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.9
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.|+|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999884
No 470
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.81 E-value=0.056 Score=51.83 Aligned_cols=24 Identities=21% Similarity=0.487 Sum_probs=21.9
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..+|.|.|++|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999885
No 471
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.80 E-value=0.049 Score=52.05 Aligned_cols=23 Identities=30% Similarity=0.353 Sum_probs=20.8
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 37999999999999999999774
No 472
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.76 E-value=0.09 Score=54.91 Aligned_cols=45 Identities=20% Similarity=0.222 Sum_probs=36.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHc
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-..+||.++.+..+.-.+.++ ...-|.|.|..|+|||||++.+..
T Consensus 3 f~~ivgq~~~~~al~~~~~~~------~~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDP------KIGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred ccccccHHHHHHHHHHHhcCC------CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 356899999998887777654 233577999999999999999964
No 473
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.75 E-value=0.075 Score=58.55 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.9
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
+..+|+|.|.+|+||||||+.+...
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhh
Confidence 6789999999999999999999763
No 474
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.75 E-value=0.07 Score=55.58 Aligned_cols=46 Identities=26% Similarity=0.258 Sum_probs=35.8
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHc
Q 035555 95 DESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
+-..++|.++.++.+.-.+... +..-|.+.|.+|+||||+|+.+..
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~------~~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDP------GIGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhcc------CCCcEEEEcCCCCCHHHHHHHHHH
Confidence 4467899999998877655432 223588999999999999999855
No 475
>PRK13949 shikimate kinase; Provisional
Probab=93.75 E-value=0.048 Score=51.05 Aligned_cols=22 Identities=45% Similarity=0.480 Sum_probs=20.1
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.|.|+|+.|+||||+|+.+++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 476
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.74 E-value=0.89 Score=45.46 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.0
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+++|.|..|.|||||.+.++.
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~G 50 (242)
T TIGR03411 29 ELRVIIGPNGAGKTTMMDVITG 50 (242)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999998864
No 477
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.74 E-value=0.22 Score=49.29 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=21.1
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.-.++.|+|.+|+|||+||.+++.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~ 41 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAV 41 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHH
Confidence 557999999999999999988754
No 478
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.72 E-value=1.1 Score=46.48 Aligned_cols=48 Identities=25% Similarity=0.202 Sum_probs=31.1
Q ss_pred eEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcch
Q 035555 243 IISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLV 291 (767)
Q Consensus 243 ~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 291 (767)
.+++++++.+|+..++.-+.-..-. ......+...+++.-..+|+|--
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l-~~~~~~~~~~e~~~~~s~GNp~e 305 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWL-RSRVDEELVLEKLFLSSNGNPRE 305 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcc-ccCCCCHHHHHHHHHhcCCCHHH
Confidence 7899999999999998876522221 11122334466666667888853
No 479
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.72 E-value=0.63 Score=46.38 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.3
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|+|..|.|||||.+.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T PRK11614 31 GEIVTLIGANGAGKTTLLGTLCG 53 (237)
T ss_pred CcEEEEECCCCCCHHHHHHHHcC
Confidence 35899999999999999998854
No 480
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.71 E-value=0.14 Score=47.07 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=19.4
Q ss_pred EEEEEccCCChHHHHHHHHHc
Q 035555 126 VISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.|.++||.|+||||+.++++.
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk 24 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAK 24 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHH
Confidence 588999999999999999976
No 481
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.23 Score=49.15 Aligned_cols=94 Identities=18% Similarity=0.240 Sum_probs=57.4
Q ss_pred ccccchhHHHHHHHHHhcCCC------CCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhh-HHHHHHHHHHHhhC
Q 035555 98 EIFGREKEKSELVNRLLCESS------KEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK-EYGIARAIIEALTY 170 (767)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~------~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~~i~~~i~~~l~~ 170 (767)
++-|-|...+.|.+...-+-. +....-+-|.++|++|.||+.||++|+.... ...|.. ..++.... ++
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-STFFSvSSSDLvSKW---mG- 208 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-STFFSVSSSDLVSKW---MG- 208 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-CceEEeehHHHHHHH---hc-
Confidence 466777777777765432210 1233567899999999999999999998644 444544 11111111 11
Q ss_pred CCCCccchHHHHHHHHHhc-CCCeEEEEEeCCC
Q 035555 171 SSSNFVEFQSLMQHIQKHV-AGKKLLLVLDDVW 202 (767)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~ 202 (767)
+-+.++..|.+.- .+++-+|++|.++
T Consensus 209 ------ESEkLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 209 ------ESEKLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred ------cHHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 1234444444444 3688999999984
No 482
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.71 E-value=0.074 Score=58.86 Aligned_cols=58 Identities=21% Similarity=0.153 Sum_probs=42.0
Q ss_pred cCCCCCCCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 89 PSISSIDESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 89 ~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
....|....+++--.+-++++..||...-. +....+++.+.|++|.||||.++.+++.
T Consensus 11 ~ky~P~~~~eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 11 EKYAPKTLDELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred hhcCCCCHHHhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHH
Confidence 333444445566667778888888876432 2234679999999999999999999875
No 483
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=93.70 E-value=0.24 Score=52.43 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=21.6
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.-++|++||++|.||+|+.+..++
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfR 586 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFR 586 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHH
Confidence 456999999999999999998876
No 484
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.69 E-value=0.95 Score=45.29 Aligned_cols=120 Identities=13% Similarity=0.113 Sum_probs=71.2
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccc------hhhhhhhHHHHHHHHHHHh
Q 035555 95 DESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDD------VKKILRKEYGIARAIIEAL 168 (767)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~------~~~~F~~~~~i~~~i~~~l 168 (767)
..+.|+|-...... ..++.... ...+.+.|+|+.|+|||+-++.+++... -...|.... +...+....
T Consensus 70 ~~~~~l~tkt~r~~-~~~~~~A~----k~g~l~~vyg~~g~gKt~a~~~y~~s~p~~~l~~~~p~~~a~~-~i~~i~~~~ 143 (297)
T COG2842 70 LAPDFLETKTVRRI-FFRTRPAS----KTGSLVVVYGYAGLGKTQAAKNYAPSNPNALLIEADPSYTALV-LILIICAAA 143 (297)
T ss_pred ccccccccchhHhH-hhhhhhhh----hcCceEEEeccccchhHHHHHhhcccCccceeecCChhhHHHH-HHHHHHHHH
Confidence 44567776554333 33333221 1344899999999999999999988521 122333322 222222222
Q ss_pred hCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCC
Q 035555 169 TYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHG 222 (767)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 222 (767)
..... ....+....+...+++..-+++.|+........++.++......+-|
T Consensus 144 ~~~~~--~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~ 195 (297)
T COG2842 144 FGATD--GTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTGIG 195 (297)
T ss_pred hcccc--hhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhhCce
Confidence 22221 23344555556666888889999999887777778777766554433
No 485
>PRK15115 response regulator GlrR; Provisional
Probab=93.68 E-value=0.31 Score=53.88 Aligned_cols=126 Identities=17% Similarity=0.114 Sum_probs=66.4
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccc-hhhhhhh------HHHHHHHHHHHhhC
Q 035555 98 EIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDD-VKKILRK------EYGIARAIIEALTY 170 (767)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~------~~~i~~~i~~~l~~ 170 (767)
.++|+...+.++.+....-.. ....|.|+|.+|+|||++|+.+.+... ....|-. ........ +.+
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~----~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~---lfg 207 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQ----SDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESE---LFG 207 (444)
T ss_pred cccccCHHHHHHHHHHHhhcc----CCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHH---hcC
Confidence 578887777777665543322 234678999999999999999977422 1122211 11111111 111
Q ss_pred CCC-CccchHHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCC-----------CCcEEEEEcCch
Q 035555 171 SSS-NFVEFQSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCL-----------HGSKILITTRKE 232 (767)
Q Consensus 171 ~~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~~ 232 (767)
... .......... ........-.|+||++..-.......+...+..+. ...|||.||...
T Consensus 208 ~~~~~~~~~~~~~~--g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~ 279 (444)
T PRK15115 208 HARGAFTGAVSNRE--GLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD 279 (444)
T ss_pred CCcCCCCCCccCCC--CcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC
Confidence 100 0000000000 00001123479999998777666777777776432 135788887753
No 486
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.67 E-value=0.25 Score=56.54 Aligned_cols=24 Identities=33% Similarity=0.446 Sum_probs=21.0
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.-..++|+|+.|.|||||++.+..
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g 388 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTR 388 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999865
No 487
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.67 E-value=0.64 Score=46.93 Aligned_cols=87 Identities=24% Similarity=0.266 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc-------cchhhhhhhHHHHHHHHHHHhhCCCCCccch
Q 035555 106 KSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN-------DDVKKILRKEYGIARAIIEALTYSSSNFVEF 178 (767)
Q Consensus 106 ~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~-------~~~~~~F~~~~~i~~~i~~~l~~~~~~~~~~ 178 (767)
+.+|.+.|..+ ..-..++|+||+||+|+|+.+..= +.+.+.|+. .+.
T Consensus 20 i~ri~RvL~~~-------~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~-------------------~~f 73 (268)
T PF12780_consen 20 IARISRVLSQP-------RGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYSI-------------------KDF 73 (268)
T ss_dssp HHHHHHHHCST-------TEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTHH-------------------HHH
T ss_pred HHHHHHHHcCC-------CCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcCH-------------------HHH
Confidence 44555566433 245679999999999999877541 111122211 111
Q ss_pred -HHHHHHHH-HhcCCCeEEEEEeCCCCcChhhHHHHHHhhhc
Q 035555 179 -QSLMQHIQ-KHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKT 218 (767)
Q Consensus 179 -~~~~~~l~-~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~ 218 (767)
+++...+. .-+++++..++++|.+-.+..-.+.+...+..
T Consensus 74 ~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~s 115 (268)
T PF12780_consen 74 KEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSS 115 (268)
T ss_dssp HHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhC
Confidence 22222222 34468899999999765554455666665554
No 488
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.66 E-value=1.9 Score=48.28 Aligned_cols=178 Identities=20% Similarity=0.166 Sum_probs=89.6
Q ss_pred ccccchhHHHHHHHHHhcCCCC-------CCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhC
Q 035555 98 EIFGREKEKSELVNRLLCESSK-------EQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTY 170 (767)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~ 170 (767)
++-|..+.++-+.+.+..+... .-....-|.++|++|.|||-||.++.....++..--.-.+++... ++
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~Ky---IG- 743 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKY---IG- 743 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHH---hc-
Confidence 4556677777777776654321 111234588999999999999999988533221100011222111 11
Q ss_pred CCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCc-----------ChhhHHHHHHhhhc--CCCCcEEEE-EcCchhHHh
Q 035555 171 SSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE-----------DFYKWEQFYNCLKT--CLHGSKILI-TTRKETVAR 236 (767)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l~~--~~~gs~ilv-TtR~~~v~~ 236 (767)
...+.+.....++-.-+++.|++|..++- ..-...++...+.. +-.|--|+- |||.+-+..
T Consensus 744 -----aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDp 818 (952)
T KOG0735|consen 744 -----ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDP 818 (952)
T ss_pred -----ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCH
Confidence 12223333334444569999999998542 11234455555542 235554554 555432211
Q ss_pred h--h-cC-cceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCc
Q 035555 237 I--M-GS-ADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLP 289 (767)
Q Consensus 237 ~--~-~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 289 (767)
. . +. ...+.-+.-++.+-.++|...+-.... ....+ .+.++.+.+|..
T Consensus 819 ALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~-~~~vd----l~~~a~~T~g~t 870 (952)
T KOG0735|consen 819 ALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLK-DTDVD----LECLAQKTDGFT 870 (952)
T ss_pred hhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCC-ccccc----hHHHhhhcCCCc
Confidence 1 1 11 233333444566666766654421111 12222 445666666654
No 489
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.63 E-value=0.69 Score=44.86 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.0
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
-.+++|.|+.|.|||||++.+..-
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 358999999999999999988653
No 490
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.58 E-value=0.76 Score=45.56 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.5
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|+|..|.|||||++.+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G 48 (230)
T TIGR03410 26 GEVTCVLGRNGVGKTTLLKTLMG 48 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35999999999999999999864
No 491
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.56 E-value=0.078 Score=55.36 Aligned_cols=46 Identities=22% Similarity=0.254 Sum_probs=37.5
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHc
Q 035555 95 DESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
+-+.+||-++.+..|.-.+.++ ...-|.|.|..|+||||+|+.+++
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p------~~~~vli~G~~GtGKs~~ar~~~~ 60 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDP------KIGGVMIMGDRGTGKSTTIRALVD 60 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCC------CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 4567999999888888877654 334577999999999999999865
No 492
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=93.56 E-value=0.65 Score=48.21 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.5
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|+|+.|.|||||.+.+..
T Consensus 19 Ge~~~l~G~NGaGKSTLl~~l~G 41 (302)
T TIGR01188 19 GEVFGFLGPNGAGKTTTIRMLTT 41 (302)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999864
No 493
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=93.54 E-value=0.78 Score=45.32 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.5
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|+|..|.|||||++.+..
T Consensus 40 Ge~~~i~G~nGsGKSTLl~~l~G 62 (226)
T cd03248 40 GEVTALVGPSGSGKSTVVALLEN 62 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999864
No 494
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.53 E-value=0.059 Score=47.03 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.8
Q ss_pred EEEEccCCChHHHHHHHHHccc
Q 035555 127 ISLVGMGGIGKTTLAQFAYNND 148 (767)
Q Consensus 127 v~I~G~gGiGKTtLa~~v~~~~ 148 (767)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998753
No 495
>PRK14530 adenylate kinase; Provisional
Probab=93.53 E-value=0.052 Score=53.25 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.|.|+|++|+||||+|+.+...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
No 496
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.50 E-value=0.28 Score=45.33 Aligned_cols=112 Identities=19% Similarity=0.212 Sum_probs=57.9
Q ss_pred EEEEEEccCCChHHHHHHHHHcccch-hh--hhhh--HHHH-HHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEE
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNNDDV-KK--ILRK--EYGI-ARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVL 198 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~~~~-~~--~F~~--~~~i-~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVl 198 (767)
.+++|+|..|.|||||++.+...... .. .|+. .... .......+..... ....+...-.+...+-..+-++++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q-lS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ-LSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee-CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 58999999999999999999764211 11 1111 0000 0011111111000 222333333455566666889999
Q ss_pred eCCCC-cChhhHHHHHHhhhcC-CCCcEEEEEcCchhHHhh
Q 035555 199 DDVWN-EDFYKWEQFYNCLKTC-LHGSKILITTRKETVARI 237 (767)
Q Consensus 199 Ddv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~~ 237 (767)
|+.-. -|......+...+... ..+..++++|-+......
T Consensus 105 DEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 105 DEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99743 2333444444444422 224567888777555443
No 497
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.50 E-value=0.045 Score=51.02 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=18.7
Q ss_pred EEEEccCCChHHHHHHHHHcc
Q 035555 127 ISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 127 v~I~G~gGiGKTtLa~~v~~~ 147 (767)
|.|+|++|+||||+|+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999998874
No 498
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.50 E-value=0.059 Score=50.66 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=20.8
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..|.|+|+.|+||||+|+.+.+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 46999999999999999999874
No 499
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.49 E-value=0.053 Score=49.90 Aligned_cols=21 Identities=43% Similarity=0.651 Sum_probs=19.2
Q ss_pred EEEEccCCChHHHHHHHHHcc
Q 035555 127 ISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 127 v~I~G~gGiGKTtLa~~v~~~ 147 (767)
|.|+|++|+||||+|+.+...
T Consensus 2 i~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999864
No 500
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.49 E-value=0.065 Score=49.56 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=22.4
Q ss_pred CEEEEEEccCCChHHHHHHHHHccc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNND 148 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~ 148 (767)
..++.|.|++|+|||||+++++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3589999999999999999999864
Done!