Query 035555
Match_columns 767
No_of_seqs 411 out of 3700
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 06:05:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 7.4E-45 2.5E-49 408.8 23.5 305 100-430 131-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-36 4.8E-41 378.9 25.6 304 91-428 118-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 1.5E-36 5E-41 343.6 22.1 274 98-421 129-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 7.1E-33 2.4E-37 316.5 26.9 299 92-425 119-449 (591)
5 4fcg_A Uncharacterized protein 99.9 5.5E-22 1.9E-26 208.2 17.3 225 446-736 82-308 (328)
6 3rgz_A Protein brassinosteroid 99.9 2.9E-22 9.8E-27 235.4 15.4 309 443-765 341-766 (768)
7 4ecn_A Leucine-rich repeat pro 99.9 6.4E-21 2.2E-25 222.5 18.7 275 442-742 512-839 (876)
8 2id5_A Lingo-1, leucine rich r 99.9 1.6E-20 5.6E-25 208.6 20.9 253 460-741 74-331 (477)
9 4eco_A Uncharacterized protein 99.8 3.1E-21 1.1E-25 221.3 14.9 268 445-741 305-598 (636)
10 4ecn_A Leucine-rich repeat pro 99.8 2.4E-21 8.1E-26 226.1 13.3 279 442-741 445-787 (876)
11 4fmz_A Internalin; leucine ric 99.8 1.6E-20 5.5E-25 199.4 18.3 258 442-741 63-322 (347)
12 4fmz_A Internalin; leucine ric 99.8 2.4E-20 8.3E-25 198.0 18.9 258 442-741 85-344 (347)
13 3v47_A TOLL-like receptor 5B a 99.8 1.5E-20 5E-25 207.7 17.9 128 593-740 275-405 (455)
14 4eco_A Uncharacterized protein 99.8 2.7E-21 9.2E-26 221.9 11.0 280 442-741 203-547 (636)
15 2id5_A Lingo-1, leucine rich r 99.8 4E-20 1.4E-24 205.4 19.8 268 445-740 32-306 (477)
16 3rgz_A Protein brassinosteroid 99.8 1E-20 3.5E-25 222.2 15.5 212 442-660 315-535 (768)
17 3o6n_A APL1; leucine-rich repe 99.8 8.5E-20 2.9E-24 197.1 18.5 262 443-741 67-350 (390)
18 3vq2_A TLR4, TOLL-like recepto 99.8 1E-19 3.5E-24 208.7 19.8 282 443-741 54-435 (606)
19 3o6n_A APL1; leucine-rich repe 99.8 3.2E-20 1.1E-24 200.4 14.6 262 443-741 43-329 (390)
20 3oja_B Anopheles plasmodium-re 99.8 5.7E-20 1.9E-24 209.6 16.6 266 442-742 72-357 (597)
21 3bz5_A Internalin-J, INLJ; leu 99.8 1.2E-19 4.2E-24 199.0 17.6 241 444-723 41-304 (457)
22 1ogq_A PGIP-2, polygalacturona 99.8 1.4E-20 4.7E-25 196.3 9.5 246 445-742 50-303 (313)
23 1xku_A Decorin; proteoglycan, 99.8 7E-19 2.4E-23 185.2 20.2 263 446-742 32-305 (330)
24 1ogq_A PGIP-2, polygalacturona 99.8 1.9E-20 6.4E-25 195.3 7.7 224 466-741 50-279 (313)
25 1o6v_A Internalin A; bacterial 99.8 7.7E-19 2.6E-23 194.2 20.9 253 443-741 66-320 (466)
26 4fcg_A Uncharacterized protein 99.8 2.7E-19 9.3E-24 187.7 16.3 212 465-745 80-292 (328)
27 1o6v_A Internalin A; bacterial 99.8 6.7E-19 2.3E-23 194.7 19.6 254 442-741 87-342 (466)
28 3t6q_A CD180 antigen; protein- 99.8 5E-19 1.7E-23 202.9 17.6 270 443-741 276-558 (606)
29 3t6q_A CD180 antigen; protein- 99.8 2.6E-19 9E-24 205.3 15.2 272 446-741 255-534 (606)
30 2ft3_A Biglycan; proteoglycan, 99.8 5.6E-19 1.9E-23 186.1 16.0 241 447-722 35-280 (332)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.6E-18 5.3E-23 196.6 20.7 141 590-741 350-508 (562)
32 2z7x_B TOLL-like receptor 1, v 99.8 1E-18 3.5E-23 196.4 18.4 142 590-741 321-479 (520)
33 3bz5_A Internalin-J, INLJ; leu 99.8 5.5E-19 1.9E-23 193.8 15.2 246 462-740 102-349 (457)
34 2ft3_A Biglycan; proteoglycan, 99.8 2E-18 6.7E-23 181.9 18.7 269 444-741 53-331 (332)
35 2z81_A CD282 antigen, TOLL-lik 99.8 4.2E-18 1.4E-22 192.8 20.9 164 590-765 358-545 (549)
36 2z81_A CD282 antigen, TOLL-lik 99.8 5.5E-19 1.9E-23 200.1 13.1 125 445-574 26-157 (549)
37 2z80_A TOLL-like receptor 2, v 99.8 2.7E-19 9.3E-24 190.2 9.9 264 454-741 42-312 (353)
38 3vq2_A TLR4, TOLL-like recepto 99.8 5.3E-19 1.8E-23 202.7 12.4 265 442-741 282-556 (606)
39 2z63_A TOLL-like receptor 4, v 99.8 1.6E-18 5.6E-23 197.1 16.3 81 443-524 74-159 (570)
40 3zyi_A Leucine-rich repeat-con 99.8 7.8E-18 2.7E-22 185.3 21.0 231 454-741 65-301 (452)
41 3v47_A TOLL-like receptor 5B a 99.8 4.1E-18 1.4E-22 188.0 18.0 281 438-741 23-382 (455)
42 3j0a_A TOLL-like receptor 5; m 99.8 6.6E-18 2.2E-22 200.5 21.0 281 439-741 18-373 (844)
43 2z7x_B TOLL-like receptor 1, v 99.8 5.1E-18 1.7E-22 190.7 18.4 100 445-549 21-126 (520)
44 2z66_A Variable lymphocyte rec 99.8 1.4E-18 4.9E-23 180.7 12.8 234 454-741 18-259 (306)
45 3zyj_A Leucine-rich repeat-con 99.8 1.3E-17 4.5E-22 182.8 20.9 231 454-741 54-290 (440)
46 3oja_B Anopheles plasmodium-re 99.8 2.9E-18 1E-22 195.5 16.3 243 442-717 96-357 (597)
47 1xku_A Decorin; proteoglycan, 99.8 1.5E-17 5E-22 175.1 19.9 240 465-741 30-274 (330)
48 3j0a_A TOLL-like receptor 5; m 99.8 1.1E-17 3.6E-22 198.7 20.4 273 442-741 45-392 (844)
49 4g8a_A TOLL-like receptor 4; l 99.7 1.3E-17 4.4E-22 192.4 18.6 100 446-548 53-158 (635)
50 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 2.7E-17 9.4E-22 186.3 20.9 123 444-575 51-179 (562)
51 3g06_A SSPH2 (leucine-rich rep 99.7 1.9E-17 6.5E-22 187.0 18.4 234 445-742 61-296 (622)
52 2z63_A TOLL-like receptor 4, v 99.7 9.8E-18 3.3E-22 190.7 15.8 146 587-740 367-528 (570)
53 1ziw_A TOLL-like receptor 3; i 99.7 2.3E-17 7.8E-22 191.8 18.1 80 444-524 72-155 (680)
54 1ziw_A TOLL-like receptor 3; i 99.7 3.7E-17 1.3E-21 190.0 18.2 277 443-740 47-363 (680)
55 2z80_A TOLL-like receptor 2, v 99.7 1.4E-17 4.7E-22 177.1 12.5 251 444-717 51-313 (353)
56 2xwt_C Thyrotropin receptor; s 99.7 1.1E-16 3.8E-21 159.9 17.9 207 454-742 22-238 (239)
57 2z66_A Variable lymphocyte rec 99.7 3.6E-17 1.2E-21 170.1 13.6 216 469-741 10-234 (306)
58 1ozn_A Reticulon 4 receptor; N 99.7 2.5E-16 8.6E-21 161.9 18.8 87 454-544 22-111 (285)
59 3o53_A Protein LRIM1, AGAP0063 99.7 1.7E-18 5.8E-23 181.0 2.2 235 463-736 31-269 (317)
60 3oja_A Leucine-rich immune mol 99.7 4.1E-18 1.4E-22 188.6 4.6 232 466-736 34-269 (487)
61 1jl5_A Outer protein YOPM; leu 99.7 3.3E-17 1.1E-21 179.5 11.3 254 445-740 11-287 (454)
62 3o53_A Protein LRIM1, AGAP0063 99.7 2.8E-18 9.5E-23 179.3 1.6 269 442-747 31-303 (317)
63 3zyj_A Leucine-rich repeat-con 99.7 3.8E-16 1.3E-20 171.2 18.4 220 445-716 64-290 (440)
64 3zyi_A Leucine-rich repeat-con 99.7 3.2E-16 1.1E-20 172.4 17.2 194 445-649 75-276 (452)
65 1p9a_G Platelet glycoprotein I 99.7 1.2E-15 4E-20 156.8 18.6 200 461-741 5-206 (290)
66 1jl5_A Outer protein YOPM; leu 99.7 1.6E-15 5.5E-20 166.0 19.6 176 445-650 131-308 (454)
67 2z62_A TOLL-like receptor 4, v 99.6 2.4E-15 8.3E-20 153.7 17.9 87 454-545 18-107 (276)
68 1h6u_A Internalin H; cell adhe 99.6 6E-16 2.1E-20 160.6 13.2 195 464-722 39-233 (308)
69 1wwl_A Monocyte differentiatio 99.6 3.2E-17 1.1E-21 170.9 3.5 225 457-741 56-307 (312)
70 1wwl_A Monocyte differentiatio 99.6 6.9E-17 2.4E-21 168.3 5.6 216 447-716 65-307 (312)
71 1ozn_A Reticulon 4 receptor; N 99.6 2.7E-15 9.4E-20 154.1 16.0 199 443-686 30-236 (285)
72 2o6q_A Variable lymphocyte rec 99.6 8.3E-15 2.8E-19 149.1 18.4 104 594-716 110-216 (270)
73 3oja_A Leucine-rich immune mol 99.6 7.2E-16 2.5E-20 170.6 11.3 222 481-743 21-250 (487)
74 1h6u_A Internalin H; cell adhe 99.6 1.7E-15 5.8E-20 157.2 12.4 188 443-650 39-228 (308)
75 2qen_A Walker-type ATPase; unk 99.6 1.1E-13 3.6E-18 146.8 25.8 289 94-421 9-348 (350)
76 3g06_A SSPH2 (leucine-rich rep 99.6 6.3E-15 2.2E-19 166.4 16.3 231 430-719 66-298 (622)
77 2o6q_A Variable lymphocyte rec 99.6 1.6E-14 5.3E-19 147.1 17.1 190 448-686 19-216 (270)
78 1p9a_G Platelet glycoprotein I 99.6 1.4E-14 4.7E-19 148.8 16.7 193 443-686 8-206 (290)
79 2ast_B S-phase kinase-associat 99.6 1.4E-16 4.6E-21 168.2 1.7 211 459-685 61-282 (336)
80 4ay9_X Follicle-stimulating ho 99.6 1.5E-14 5.2E-19 153.1 16.0 230 454-714 20-255 (350)
81 1w5s_A Origin recognition comp 99.6 3.1E-14 1.1E-18 154.7 18.6 290 96-401 21-372 (412)
82 3rfs_A Internalin B, repeat mo 99.6 9.5E-15 3.2E-19 148.8 13.6 114 591-730 131-247 (272)
83 2ca6_A RAN GTPase-activating p 99.6 1.6E-16 5.4E-21 171.1 -1.7 196 454-650 20-255 (386)
84 2ast_B S-phase kinase-associat 99.5 3.5E-16 1.2E-20 165.1 -0.9 250 467-749 48-311 (336)
85 2xwt_C Thyrotropin receptor; s 99.5 2.3E-14 7.7E-19 143.0 12.4 198 445-717 31-238 (239)
86 2z62_A TOLL-like receptor 4, v 99.5 2.5E-14 8.5E-19 146.2 12.4 199 445-650 28-235 (276)
87 4ay9_X Follicle-stimulating ho 99.5 1.2E-13 4E-18 146.2 17.6 236 469-736 12-253 (350)
88 2fna_A Conserved hypothetical 99.5 5E-13 1.7E-17 142.0 21.7 285 95-421 11-356 (357)
89 3rfs_A Internalin B, repeat mo 99.5 1.1E-13 3.7E-18 141.0 15.5 190 461-736 36-229 (272)
90 1z7x_W Ribonuclease inhibitor; 99.5 4.2E-16 1.4E-20 172.2 -5.3 63 675-741 313-381 (461)
91 1h6t_A Internalin B; cell adhe 99.5 3.5E-14 1.2E-18 145.9 9.0 168 464-650 44-211 (291)
92 1z7x_W Ribonuclease inhibitor; 99.5 1E-15 3.5E-20 169.1 -4.8 281 446-741 86-409 (461)
93 4glp_A Monocyte differentiatio 99.5 8.5E-14 2.9E-18 144.7 10.0 200 466-716 91-305 (310)
94 1m9s_A Internalin B; cell inva 99.5 9.7E-14 3.3E-18 156.5 10.5 168 464-650 41-208 (605)
95 4glp_A Monocyte differentiatio 99.5 8.2E-14 2.8E-18 144.8 9.0 197 445-686 91-305 (310)
96 2ca6_A RAN GTPase-activating p 99.5 5.5E-15 1.9E-19 159.0 -0.5 226 443-686 30-314 (386)
97 3cvr_A Invasion plasmid antige 99.4 3.6E-13 1.2E-17 150.1 14.1 190 467-724 60-249 (571)
98 3ogk_B Coronatine-insensitive 99.4 3.8E-15 1.3E-19 170.1 -2.6 279 442-741 161-474 (592)
99 3goz_A Leucine-rich repeat-con 99.4 7.4E-15 2.5E-19 156.4 -0.3 164 458-626 14-206 (362)
100 3ogk_B Coronatine-insensitive 99.4 4.6E-14 1.6E-18 161.1 3.6 276 443-745 190-527 (592)
101 4ezg_A Putative uncharacterize 99.4 5.7E-13 2E-17 128.4 9.9 79 462-544 40-118 (197)
102 1xeu_A Internalin C; cellular 99.4 2.8E-13 9.5E-18 136.9 7.3 162 446-650 20-183 (263)
103 1m9s_A Internalin B; cell inva 99.4 1.9E-13 6.3E-18 154.3 6.6 188 465-685 20-207 (605)
104 4g8a_A TOLL-like receptor 4; l 99.4 1.5E-12 5.2E-17 149.8 13.4 246 462-739 324-576 (635)
105 2p1m_B Transport inhibitor res 99.4 7.4E-14 2.5E-18 159.5 1.1 274 442-742 181-518 (594)
106 3m19_A Variable lymphocyte rec 99.4 3.1E-12 1.1E-16 128.4 12.6 92 448-544 17-113 (251)
107 3cvr_A Invasion plasmid antige 99.4 3.5E-12 1.2E-16 142.2 14.2 173 446-686 60-241 (571)
108 3m19_A Variable lymphocyte rec 99.4 8.3E-12 2.9E-16 125.3 15.6 172 466-716 14-190 (251)
109 1h6t_A Internalin B; cell adhe 99.3 2.9E-12 1E-16 131.5 11.9 167 443-628 44-212 (291)
110 2v1u_A Cell division control p 99.3 1.3E-10 4.6E-15 124.6 25.1 284 96-401 18-352 (387)
111 2qby_B CDC6 homolog 3, cell di 99.3 2.3E-10 8E-15 122.6 25.2 280 97-401 20-340 (384)
112 1njg_A DNA polymerase III subu 99.3 9.9E-12 3.4E-16 124.3 13.2 194 96-299 22-231 (250)
113 3goz_A Leucine-rich repeat-con 99.3 3E-13 1E-17 143.8 2.0 235 443-686 20-295 (362)
114 1dce_A Protein (RAB geranylger 99.3 3.8E-14 1.3E-18 158.9 -5.4 121 594-736 442-567 (567)
115 1xeu_A Internalin C; cellular 99.3 1.1E-12 3.7E-17 132.5 5.6 167 464-686 17-183 (263)
116 1fnn_A CDC6P, cell division co 99.3 1.2E-10 4E-15 125.3 21.9 288 96-402 16-353 (389)
117 2p1m_B Transport inhibitor res 99.3 4.5E-14 1.5E-18 161.3 -6.2 103 443-546 103-219 (594)
118 4ezg_A Putative uncharacterize 99.3 8.3E-12 2.8E-16 120.1 9.2 148 443-650 42-192 (197)
119 1dce_A Protein (RAB geranylger 99.3 3.9E-14 1.3E-18 158.8 -8.4 214 463-712 346-567 (567)
120 2o6s_A Variable lymphocyte rec 99.3 2.6E-11 9E-16 117.8 12.0 66 455-524 19-86 (208)
121 2v9t_B SLIT homolog 2 protein 99.2 6.9E-11 2.3E-15 115.8 13.0 137 454-650 22-163 (220)
122 3e6j_A Variable lymphocyte rec 99.2 9.1E-11 3.1E-15 115.7 13.9 137 454-650 30-170 (229)
123 2chg_A Replication factor C sm 99.2 2.5E-10 8.4E-15 112.2 15.3 181 96-296 16-204 (226)
124 2o6s_A Variable lymphocyte rec 99.2 1.3E-10 4.4E-15 112.9 13.0 72 469-545 10-83 (208)
125 2qby_A CDC6 homolog 1, cell di 99.2 7.5E-10 2.6E-14 118.7 19.0 286 95-400 18-348 (386)
126 2v9t_B SLIT homolog 2 protein 99.2 1.9E-10 6.4E-15 112.6 12.9 146 469-686 14-163 (220)
127 2xot_A Amphoterin-induced prot 99.1 1.1E-10 3.7E-15 123.9 11.0 165 449-686 22-200 (361)
128 2v70_A SLIT-2, SLIT homolog 2 99.1 2.9E-10 9.8E-15 111.3 12.7 57 594-650 106-164 (220)
129 3e6j_A Variable lymphocyte rec 99.1 2.8E-10 9.4E-15 112.2 12.2 148 468-686 21-170 (229)
130 2xot_A Amphoterin-induced prot 99.1 1.7E-10 5.8E-15 122.4 10.6 147 445-650 39-200 (361)
131 3sb4_A Hypothetical leucine ri 99.1 6.9E-10 2.4E-14 116.1 15.0 220 489-736 100-328 (329)
132 2v70_A SLIT-2, SLIT homolog 2 99.1 4.2E-10 1.4E-14 110.1 12.3 62 612-685 101-163 (220)
133 1sxj_B Activator 1 37 kDa subu 99.1 1.1E-09 3.8E-14 114.3 15.5 184 95-298 19-212 (323)
134 2ell_A Acidic leucine-rich nuc 99.0 2.4E-10 8.2E-15 106.7 7.7 130 591-741 22-158 (168)
135 2ell_A Acidic leucine-rich nuc 99.0 3.8E-10 1.3E-14 105.4 7.1 137 443-610 22-164 (168)
136 2je0_A Acidic leucine-rich nuc 99.0 2.6E-10 8.8E-15 104.1 5.7 105 443-550 15-125 (149)
137 1hqc_A RUVB; extended AAA-ATPa 99.0 1.8E-09 6.2E-14 112.7 12.8 183 96-299 11-214 (324)
138 1a9n_A U2A', U2A'; complex (nu 99.0 2.7E-10 9.2E-15 107.3 5.1 135 588-742 14-152 (176)
139 2je0_A Acidic leucine-rich nuc 99.0 3.3E-10 1.1E-14 103.4 4.5 76 464-543 15-93 (149)
140 4b8c_D Glucose-repressible alc 98.9 2.5E-10 8.7E-15 132.0 3.5 104 442-548 221-326 (727)
141 1w8a_A SLIT protein; signaling 98.9 4E-09 1.4E-13 100.7 10.2 52 469-524 11-64 (192)
142 1iqp_A RFCS; clamp loader, ext 98.9 1.3E-08 4.6E-13 106.2 15.0 182 96-297 24-213 (327)
143 1a9n_A U2A', U2A'; complex (nu 98.9 1.6E-09 5.4E-14 102.0 7.0 102 443-549 17-124 (176)
144 2wfh_A SLIT homolog 2 protein 98.9 7.3E-09 2.5E-13 98.8 11.5 52 469-524 13-64 (193)
145 1ds9_A Outer arm dynein; leuci 98.8 3.9E-11 1.3E-15 115.5 -7.0 41 482-524 40-80 (198)
146 3sb4_A Hypothetical leucine ri 98.8 9.3E-09 3.2E-13 107.4 10.2 213 465-711 100-327 (329)
147 1ds9_A Outer arm dynein; leuci 98.8 1.5E-10 5.1E-15 111.4 -3.5 114 454-574 36-149 (198)
148 4b8c_D Glucose-repressible alc 98.8 4.2E-09 1.4E-13 121.9 7.8 80 443-524 245-326 (727)
149 1w8a_A SLIT protein; signaling 98.8 1.9E-08 6.5E-13 95.9 9.6 119 596-736 11-133 (192)
150 1jr3_A DNA polymerase III subu 98.7 5.7E-08 1.9E-12 103.5 13.8 191 97-296 16-221 (373)
151 4fdw_A Leucine rich hypothetic 98.7 5E-07 1.7E-11 96.5 21.0 261 454-758 123-394 (401)
152 2wfh_A SLIT homolog 2 protein 98.7 2.9E-08 1E-12 94.6 10.2 95 449-548 14-112 (193)
153 2o6r_A Variable lymphocyte rec 98.7 5.9E-08 2E-12 91.2 11.7 123 596-741 10-135 (177)
154 2chq_A Replication factor C sm 98.7 6.4E-08 2.2E-12 100.6 12.9 182 96-295 16-203 (319)
155 2o6r_A Variable lymphocyte rec 98.7 1.2E-07 4.1E-12 89.1 11.4 53 468-524 9-62 (177)
156 2r9u_A Variable lymphocyte rec 98.6 5.4E-08 1.9E-12 91.0 8.5 97 449-550 16-117 (174)
157 3te6_A Regulatory protein SIR3 98.6 2.2E-07 7.4E-12 94.6 13.1 161 98-262 21-211 (318)
158 3pfi_A Holliday junction ATP-d 98.6 6.5E-07 2.2E-11 93.7 16.9 180 95-296 27-227 (338)
159 3g39_A Variable lymphocyte rec 98.6 8.8E-08 3E-12 89.2 8.3 98 448-550 12-114 (170)
160 4fdw_A Leucine rich hypothetic 98.6 1E-06 3.5E-11 94.1 17.5 232 446-715 136-380 (401)
161 1sxj_D Activator 1 41 kDa subu 98.5 4.8E-07 1.6E-11 95.4 13.1 181 95-294 35-233 (353)
162 1jbk_A CLPB protein; beta barr 98.5 3E-07 1E-11 87.4 10.5 147 96-258 21-194 (195)
163 1sxj_E Activator 1 40 kDa subu 98.5 9.4E-07 3.2E-11 93.2 13.4 192 96-296 13-237 (354)
164 3h4m_A Proteasome-activating n 98.4 1.3E-06 4.5E-11 88.9 13.1 185 95-293 15-228 (285)
165 2r9u_A Variable lymphocyte rec 98.4 2.8E-07 9.5E-12 86.1 6.9 88 444-534 32-124 (174)
166 3pvs_A Replication-associated 98.4 2E-06 6.9E-11 92.7 14.3 178 96-293 25-212 (447)
167 3bos_A Putative DNA replicatio 98.4 8.1E-07 2.8E-11 87.9 10.4 171 97-295 28-216 (242)
168 2z4s_A Chromosomal replication 98.4 4.6E-06 1.6E-10 90.0 16.5 155 124-293 130-303 (440)
169 3g39_A Variable lymphocyte rec 98.4 8.3E-07 2.8E-11 82.5 8.5 100 596-715 12-112 (170)
170 1sxj_A Activator 1 95 kDa subu 98.4 2.3E-06 7.9E-11 94.6 13.3 193 94-298 36-255 (516)
171 3u61_B DNA polymerase accessor 98.3 2.9E-06 9.9E-11 88.1 13.1 174 95-292 24-212 (324)
172 2ifg_A High affinity nerve gro 98.3 6.6E-07 2.3E-11 94.1 7.8 94 454-551 20-116 (347)
173 3uk6_A RUVB-like 2; hexameric 98.3 6E-06 2.1E-10 87.5 15.1 189 96-293 43-300 (368)
174 2qz4_A Paraplegin; AAA+, SPG7, 98.3 5.8E-06 2E-10 82.9 13.5 183 96-290 5-215 (262)
175 1sxj_C Activator 1 40 kDa subu 98.2 1.2E-05 4E-10 84.1 14.3 176 96-291 24-207 (340)
176 1l8q_A Chromosomal replication 98.2 1.8E-05 6E-10 82.1 15.1 166 105-290 22-202 (324)
177 2ifg_A High affinity nerve gro 98.2 5.1E-06 1.7E-10 87.3 10.5 75 598-685 13-90 (347)
178 3e4g_A ATP synthase subunit S, 98.2 6.2E-07 2.1E-11 82.3 2.9 66 673-745 83-154 (176)
179 3eie_A Vacuolar protein sortin 98.2 2.4E-05 8.3E-10 80.9 15.1 185 96-295 17-227 (322)
180 2p65_A Hypothetical protein PF 98.2 2.9E-06 1E-10 80.0 7.6 46 96-147 21-66 (187)
181 3syl_A Protein CBBX; photosynt 98.1 1E-05 3.5E-10 83.3 11.5 155 98-262 32-217 (309)
182 1a5t_A Delta prime, HOLB; zinc 98.1 7.6E-05 2.6E-09 77.5 17.3 178 103-295 8-204 (334)
183 2qp9_X Vacuolar protein sortin 98.1 3.5E-05 1.2E-09 80.7 14.8 186 96-296 50-261 (355)
184 2ra8_A Uncharacterized protein 98.1 7.6E-07 2.6E-11 93.3 1.9 136 589-741 168-318 (362)
185 3e4g_A ATP synthase subunit S, 98.1 4.4E-07 1.5E-11 83.3 0.0 92 616-720 61-154 (176)
186 2ra8_A Uncharacterized protein 98.1 1.7E-06 5.8E-11 90.6 4.3 164 461-650 134-318 (362)
187 1in4_A RUVB, holliday junction 98.1 0.00016 5.6E-09 75.0 19.2 178 96-295 24-222 (334)
188 3ec2_A DNA replication protein 98.1 2.4E-05 8.2E-10 73.3 11.4 117 102-231 19-142 (180)
189 3d8b_A Fidgetin-like protein 1 98.0 3.3E-05 1.1E-09 81.1 13.5 188 95-296 82-295 (357)
190 3cf0_A Transitional endoplasmi 98.0 5.8E-05 2E-09 77.1 14.7 180 96-291 14-223 (301)
191 1d2n_A N-ethylmaleimide-sensit 98.0 1.8E-05 6.1E-10 79.8 10.5 172 97-288 33-229 (272)
192 4fs7_A Uncharacterized protein 98.0 0.00011 3.8E-09 78.4 16.8 265 442-738 68-375 (394)
193 3b9p_A CG5977-PA, isoform A; A 98.0 8E-05 2.7E-09 76.0 15.1 186 96-295 20-232 (297)
194 3n70_A Transport activator; si 97.9 1E-05 3.4E-10 72.9 6.3 111 98-231 2-115 (145)
195 1xwi_A SKD1 protein; VPS4B, AA 97.9 0.00011 3.9E-09 75.6 14.9 189 96-296 11-223 (322)
196 3hu3_A Transitional endoplasmi 97.9 9.7E-05 3.3E-09 80.4 14.3 176 97-288 204-406 (489)
197 3vfd_A Spastin; ATPase, microt 97.9 0.00018 6.2E-09 76.5 16.1 187 94-295 112-325 (389)
198 3un9_A NLR family member X1; l 97.9 6.2E-07 2.1E-11 94.8 -3.4 58 466-524 72-136 (372)
199 4fs7_A Uncharacterized protein 97.9 0.00013 4.6E-09 77.7 14.8 234 460-734 156-393 (394)
200 3co5_A Putative two-component 97.8 1.8E-05 6.3E-10 70.9 6.1 111 97-231 4-115 (143)
201 2zan_A Vacuolar protein sortin 97.7 0.00048 1.6E-08 74.4 16.1 188 95-296 132-345 (444)
202 3pxg_A Negative regulator of g 97.7 0.0003 1E-08 76.5 13.8 143 97-262 180-338 (468)
203 3un9_A NLR family member X1; l 97.7 7.9E-07 2.7E-11 94.0 -6.6 36 489-525 71-112 (372)
204 4gt6_A Cell surface protein; l 97.7 0.00062 2.1E-08 72.5 15.5 79 442-524 84-170 (394)
205 1qvr_A CLPB protein; coiled co 97.6 9.2E-05 3.2E-09 87.1 9.3 149 97-261 170-344 (854)
206 4fcw_A Chaperone protein CLPB; 97.6 0.00013 4.5E-09 74.9 9.4 131 98-231 18-169 (311)
207 4gt6_A Cell surface protein; l 97.6 0.0014 4.9E-08 69.6 17.8 255 447-740 66-367 (394)
208 4b4t_J 26S protease regulatory 97.6 0.00063 2.1E-08 70.9 14.3 179 97-289 148-354 (405)
209 2w58_A DNAI, primosome compone 97.6 8.6E-05 2.9E-09 70.9 7.0 42 104-147 36-77 (202)
210 4b4t_K 26S protease regulatory 97.6 0.00039 1.4E-08 73.6 12.4 51 97-147 172-229 (428)
211 1lv7_A FTSH; alpha/beta domain 97.6 0.0012 4.2E-08 65.5 15.4 185 95-293 10-222 (257)
212 2bjv_A PSP operon transcriptio 97.6 0.00021 7.2E-09 71.5 9.6 47 97-147 6-52 (265)
213 2gno_A DNA polymerase III, gam 97.6 0.00044 1.5E-08 70.3 12.0 145 101-262 1-152 (305)
214 1ojl_A Transcriptional regulat 97.5 0.00039 1.3E-08 70.9 11.5 47 97-147 2-48 (304)
215 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00028 9.6E-09 82.1 11.6 152 96-261 185-361 (758)
216 4b4t_L 26S protease subunit RP 97.5 0.00061 2.1E-08 72.2 13.0 179 97-289 181-387 (437)
217 1ofh_A ATP-dependent HSL prote 97.5 0.00039 1.3E-08 71.3 11.4 51 97-147 15-73 (310)
218 4b4t_H 26S protease regulatory 97.5 0.0011 3.7E-08 70.1 14.3 179 97-289 209-415 (467)
219 2ce7_A Cell division protein F 97.4 0.0017 5.8E-08 70.0 15.0 180 96-289 15-221 (476)
220 3pxi_A Negative regulator of g 97.4 0.001 3.6E-08 77.2 13.9 144 96-262 179-338 (758)
221 2c9o_A RUVB-like 1; hexameric 97.4 0.0012 4.1E-08 71.6 13.5 96 194-293 297-407 (456)
222 4b4t_M 26S protease regulatory 97.4 0.00043 1.5E-08 73.3 9.1 178 97-289 181-387 (434)
223 2r44_A Uncharacterized protein 97.3 0.00041 1.4E-08 72.0 8.8 148 97-263 27-199 (331)
224 2r62_A Cell division protease 97.3 3.2E-05 1.1E-09 77.7 0.3 52 96-147 10-67 (268)
225 4b4t_I 26S protease regulatory 97.3 0.00089 3E-08 70.0 10.7 178 97-289 182-388 (437)
226 3cf2_A TER ATPase, transitiona 97.3 0.0023 7.8E-08 73.2 14.5 177 97-289 204-407 (806)
227 3rw6_A Nuclear RNA export fact 97.2 0.00031 1.1E-08 69.5 5.1 61 463-526 167-232 (267)
228 3t15_A Ribulose bisphosphate c 97.1 0.0033 1.1E-07 63.7 12.7 25 123-147 35-59 (293)
229 2kjq_A DNAA-related protein; s 97.1 0.00034 1.2E-08 62.9 4.6 23 125-147 37-59 (149)
230 1io0_A Tropomodulin; LRR prote 97.1 0.00023 7.8E-09 66.8 3.2 64 460-524 30-103 (185)
231 3pxi_A Negative regulator of g 97.1 0.0026 8.8E-08 73.9 12.7 154 97-261 491-674 (758)
232 1ixz_A ATP-dependent metallopr 97.0 0.0077 2.6E-07 59.5 13.9 177 96-289 15-221 (254)
233 4h09_A Hypothetical leucine ri 96.9 0.015 5.2E-07 61.2 15.4 73 446-523 47-122 (379)
234 4h09_A Hypothetical leucine ri 96.9 0.02 6.7E-07 60.4 16.2 102 612-736 236-340 (379)
235 1r6b_X CLPA protein; AAA+, N-t 96.9 0.00067 2.3E-08 78.9 5.1 129 97-231 458-607 (758)
236 2dhr_A FTSH; AAA+ protein, hex 96.8 0.0065 2.2E-07 65.9 12.2 177 95-289 29-236 (499)
237 3m6a_A ATP-dependent protease 96.8 0.0019 6.5E-08 71.5 8.2 51 97-147 81-131 (543)
238 1ypw_A Transitional endoplasmi 96.8 0.0045 1.5E-07 71.9 11.5 158 96-262 203-385 (806)
239 1iy2_A ATP-dependent metallopr 96.8 0.022 7.4E-07 57.1 15.1 179 95-289 38-245 (278)
240 3rw6_A Nuclear RNA export fact 96.8 0.001 3.5E-08 65.8 5.0 77 443-521 168-258 (267)
241 2x8a_A Nuclear valosin-contain 96.7 0.017 5.9E-07 57.6 13.7 152 97-262 10-191 (274)
242 3nbx_X ATPase RAVA; AAA+ ATPas 96.7 0.003 1E-07 68.6 8.6 42 98-147 23-64 (500)
243 2qgz_A Helicase loader, putati 96.7 0.00059 2E-08 69.6 2.8 43 102-147 133-175 (308)
244 1um8_A ATP-dependent CLP prote 96.6 0.0048 1.6E-07 65.1 9.1 50 98-147 22-95 (376)
245 1io0_A Tropomodulin; LRR prote 96.6 0.0006 2.1E-08 63.9 1.6 81 443-524 34-133 (185)
246 3lw7_A Adenylate kinase relate 96.4 0.024 8.3E-07 52.0 11.7 20 125-144 2-21 (179)
247 4gp7_A Metallophosphoesterase; 96.4 0.01 3.4E-07 54.6 8.8 23 123-145 8-30 (171)
248 1qvr_A CLPB protein; coiled co 96.4 0.0028 9.4E-08 74.6 6.0 130 98-231 559-710 (854)
249 1rz3_A Hypothetical protein rb 96.1 0.0068 2.3E-07 57.4 5.8 43 101-146 2-44 (201)
250 2vhj_A Ntpase P4, P4; non- hyd 95.9 0.0058 2E-07 61.4 4.5 72 123-203 122-193 (331)
251 3cf2_A TER ATPase, transitiona 95.8 0.023 7.7E-07 65.0 9.8 159 95-262 475-661 (806)
252 1jr3_D DNA polymerase III, del 95.8 0.12 4.1E-06 53.4 14.7 157 123-294 17-183 (343)
253 3c8u_A Fructokinase; YP_612366 95.8 0.0072 2.5E-07 57.7 4.8 39 104-146 6-44 (208)
254 2cvh_A DNA repair and recombin 95.8 0.039 1.3E-06 52.8 10.0 24 123-146 19-42 (220)
255 1u0j_A DNA replication protein 95.4 0.13 4.4E-06 50.3 12.1 38 106-147 90-127 (267)
256 3hws_A ATP-dependent CLP prote 95.4 0.012 4.2E-07 61.5 5.0 50 98-147 16-74 (363)
257 1gvn_B Zeta; postsegregational 95.2 0.02 6.7E-07 57.6 5.7 42 104-146 14-55 (287)
258 1odf_A YGR205W, hypothetical 3 95.2 0.02 6.9E-07 57.5 5.7 25 122-146 29-53 (290)
259 1qhx_A CPT, protein (chloramph 95.1 0.01 3.5E-07 54.9 3.2 23 125-147 4-26 (178)
260 1zp6_A Hypothetical protein AT 95.1 0.013 4.6E-07 54.8 3.8 25 123-147 8-32 (191)
261 2ga8_A Hypothetical 39.9 kDa p 95.0 0.024 8.3E-07 57.8 5.8 45 100-146 2-46 (359)
262 3tqc_A Pantothenate kinase; bi 95.0 0.024 8.3E-07 57.5 5.6 46 99-146 69-114 (321)
263 2p5t_B PEZT; postsegregational 94.9 0.023 7.7E-07 56.0 5.2 44 103-147 12-55 (253)
264 3kb2_A SPBC2 prophage-derived 94.9 0.012 4E-07 54.1 2.9 23 125-147 2-24 (173)
265 3vaa_A Shikimate kinase, SK; s 94.9 0.013 4.4E-07 55.4 3.2 23 124-146 25-47 (199)
266 1ly1_A Polynucleotide kinase; 94.9 0.014 5E-07 53.9 3.4 22 125-146 3-24 (181)
267 2b8t_A Thymidine kinase; deoxy 94.8 0.017 5.9E-07 55.3 3.7 106 123-233 11-127 (223)
268 1kgd_A CASK, peripheral plasma 94.8 0.015 5.3E-07 53.8 3.3 23 124-146 5-27 (180)
269 3uie_A Adenylyl-sulfate kinase 94.8 0.018 6E-07 54.5 3.8 25 123-147 24-48 (200)
270 1g8p_A Magnesium-chelatase 38 94.7 0.014 4.8E-07 60.7 3.2 46 96-147 23-68 (350)
271 3sr0_A Adenylate kinase; phosp 94.7 0.051 1.7E-06 51.4 6.7 73 126-203 2-85 (206)
272 2ff7_A Alpha-hemolysin translo 94.7 0.11 3.6E-06 50.9 9.1 22 125-146 36-57 (247)
273 1kag_A SKI, shikimate kinase I 94.6 0.013 4.4E-07 53.9 2.3 23 125-147 5-27 (173)
274 3trf_A Shikimate kinase, SK; a 94.6 0.017 5.7E-07 53.8 3.0 24 124-147 5-28 (185)
275 1knq_A Gluconate kinase; ALFA/ 94.6 0.023 7.8E-07 52.3 3.9 24 123-146 7-30 (175)
276 2rhm_A Putative kinase; P-loop 94.4 0.023 7.8E-07 53.2 3.6 25 123-147 4-28 (193)
277 3tui_C Methionine import ATP-b 94.4 0.22 7.4E-06 51.3 11.0 60 178-237 167-229 (366)
278 4eun_A Thermoresistant glucoki 94.4 0.02 6.9E-07 54.1 3.2 24 123-146 28-51 (200)
279 3tau_A Guanylate kinase, GMP k 94.4 0.021 7.3E-07 54.3 3.3 25 123-147 7-31 (208)
280 2qt1_A Nicotinamide riboside k 94.3 0.027 9.3E-07 53.5 3.9 25 123-147 20-44 (207)
281 3asz_A Uridine kinase; cytidin 94.3 0.025 8.7E-07 53.9 3.6 24 123-146 5-28 (211)
282 3iij_A Coilin-interacting nucl 94.2 0.02 6.8E-07 53.0 2.8 24 124-147 11-34 (180)
283 3t61_A Gluconokinase; PSI-biol 94.2 0.017 5.8E-07 54.7 2.3 24 124-147 18-41 (202)
284 3tr0_A Guanylate kinase, GMP k 94.2 0.025 8.5E-07 53.6 3.5 22 125-146 8-29 (205)
285 2qor_A Guanylate kinase; phosp 94.2 0.02 6.9E-07 54.3 2.7 25 123-147 11-35 (204)
286 1nks_A Adenylate kinase; therm 94.2 0.023 8E-07 53.1 3.2 23 125-147 2-24 (194)
287 1zuh_A Shikimate kinase; alpha 94.2 0.022 7.6E-07 52.0 2.9 25 123-147 6-30 (168)
288 3a00_A Guanylate kinase, GMP k 94.2 0.02 7E-07 53.3 2.6 22 125-146 2-23 (186)
289 2j41_A Guanylate kinase; GMP, 94.1 0.025 8.6E-07 53.6 3.3 24 124-147 6-29 (207)
290 1y63_A LMAJ004144AAA protein; 94.1 0.026 8.9E-07 52.5 3.3 25 123-147 9-33 (184)
291 1uf9_A TT1252 protein; P-loop, 94.1 0.028 9.6E-07 53.1 3.6 25 123-147 7-31 (203)
292 2bdt_A BH3686; alpha-beta prot 94.1 0.027 9.3E-07 52.6 3.4 22 125-146 3-24 (189)
293 3fwy_A Light-independent proto 94.1 0.028 9.5E-07 57.1 3.7 23 123-145 47-69 (314)
294 3tlx_A Adenylate kinase 2; str 94.1 0.041 1.4E-06 53.8 4.7 25 123-147 28-52 (243)
295 2ze6_A Isopentenyl transferase 94.0 0.026 9E-07 55.5 3.3 23 125-147 2-24 (253)
296 1kht_A Adenylate kinase; phosp 94.0 0.025 8.7E-07 52.8 3.0 23 125-147 4-26 (192)
297 1ukz_A Uridylate kinase; trans 94.0 0.033 1.1E-06 52.6 3.8 25 123-147 14-38 (203)
298 1tev_A UMP-CMP kinase; ploop, 93.9 0.03 1E-06 52.5 3.4 24 124-147 3-26 (196)
299 1g5t_A COB(I)alamin adenosyltr 93.9 0.18 6.3E-06 46.6 8.5 52 181-232 108-163 (196)
300 2yvu_A Probable adenylyl-sulfa 93.9 0.037 1.3E-06 51.5 3.9 25 123-147 12-36 (186)
301 1jjv_A Dephospho-COA kinase; P 93.9 0.032 1.1E-06 52.9 3.5 22 125-146 3-24 (206)
302 2c95_A Adenylate kinase 1; tra 93.9 0.03 1E-06 52.5 3.3 24 124-147 9-32 (196)
303 1ye8_A Protein THEP1, hypothet 93.9 0.031 1.1E-06 51.6 3.2 22 126-147 2-23 (178)
304 1via_A Shikimate kinase; struc 93.9 0.024 8.2E-07 52.2 2.4 22 126-147 6-27 (175)
305 2if2_A Dephospho-COA kinase; a 93.8 0.028 9.6E-07 53.2 3.0 21 126-146 3-23 (204)
306 1cke_A CK, MSSA, protein (cyti 93.8 0.029 9.8E-07 54.2 3.0 22 125-146 6-27 (227)
307 3zvl_A Bifunctional polynucleo 93.8 0.15 5.2E-06 54.1 8.9 25 123-147 257-281 (416)
308 1ex7_A Guanylate kinase; subst 93.8 0.025 8.4E-07 52.5 2.3 23 125-147 2-24 (186)
309 1lvg_A Guanylate kinase, GMP k 93.8 0.026 8.7E-07 53.3 2.5 22 125-146 5-26 (198)
310 2iyv_A Shikimate kinase, SK; t 93.8 0.023 7.7E-07 52.8 2.1 22 126-147 4-25 (184)
311 3ney_A 55 kDa erythrocyte memb 93.8 0.032 1.1E-06 52.1 3.1 24 123-146 18-41 (197)
312 2jaq_A Deoxyguanosine kinase; 93.8 0.03 1E-06 52.9 3.0 21 126-146 2-22 (205)
313 3a4m_A L-seryl-tRNA(SEC) kinas 93.7 0.035 1.2E-06 54.9 3.5 24 124-147 4-27 (260)
314 1xjc_A MOBB protein homolog; s 93.7 0.033 1.1E-06 50.6 3.0 24 123-146 3-26 (169)
315 3jvv_A Twitching mobility prot 93.7 0.2 6.9E-06 51.7 9.3 106 125-236 124-235 (356)
316 1uj2_A Uridine-cytidine kinase 93.7 0.036 1.2E-06 54.5 3.5 24 123-146 21-44 (252)
317 3aez_A Pantothenate kinase; tr 93.6 0.04 1.4E-06 56.0 3.8 24 123-146 89-112 (312)
318 2hf9_A Probable hydrogenase ni 93.6 0.058 2E-06 51.9 4.9 25 123-147 37-61 (226)
319 1qf9_A UMP/CMP kinase, protein 93.6 0.045 1.5E-06 51.1 3.9 25 123-147 5-29 (194)
320 2bwj_A Adenylate kinase 5; pho 93.6 0.034 1.1E-06 52.3 3.0 23 125-147 13-35 (199)
321 3cm0_A Adenylate kinase; ATP-b 93.6 0.037 1.3E-06 51.4 3.2 22 125-146 5-26 (186)
322 2grj_A Dephospho-COA kinase; T 93.6 0.035 1.2E-06 51.9 3.0 25 123-147 11-35 (192)
323 2pez_A Bifunctional 3'-phospho 93.6 0.041 1.4E-06 50.8 3.5 24 123-146 4-27 (179)
324 1e6c_A Shikimate kinase; phosp 93.6 0.028 9.6E-07 51.5 2.3 23 125-147 3-25 (173)
325 2plr_A DTMP kinase, probable t 93.5 0.04 1.4E-06 52.4 3.5 24 124-147 4-27 (213)
326 2jeo_A Uridine-cytidine kinase 93.5 0.045 1.5E-06 53.6 3.9 24 123-146 24-47 (245)
327 2cdn_A Adenylate kinase; phosp 93.5 0.042 1.4E-06 51.8 3.5 25 123-147 19-43 (201)
328 3r20_A Cytidylate kinase; stru 93.5 0.067 2.3E-06 51.5 4.9 23 124-146 9-31 (233)
329 2pt5_A Shikimate kinase, SK; a 93.5 0.037 1.3E-06 50.4 3.0 22 126-147 2-23 (168)
330 1z47_A CYSA, putative ABC-tran 93.5 0.38 1.3E-05 49.4 10.9 22 125-146 42-63 (355)
331 1znw_A Guanylate kinase, GMP k 93.4 0.041 1.4E-06 52.2 3.4 23 124-146 20-42 (207)
332 2bbw_A Adenylate kinase 4, AK4 93.4 0.04 1.4E-06 53.9 3.3 23 124-146 27-49 (246)
333 3ice_A Transcription terminati 93.3 0.038 1.3E-06 56.7 3.0 23 124-146 174-196 (422)
334 1z6g_A Guanylate kinase; struc 93.3 0.036 1.2E-06 53.1 2.8 23 124-146 23-45 (218)
335 2vli_A Antibiotic resistance p 93.3 0.028 9.7E-07 52.0 1.9 24 124-147 5-28 (183)
336 3umf_A Adenylate kinase; rossm 93.3 0.049 1.7E-06 51.8 3.6 26 122-147 27-52 (217)
337 3rlf_A Maltose/maltodextrin im 93.3 0.25 8.5E-06 51.2 9.1 22 125-146 30-51 (381)
338 2pbr_A DTMP kinase, thymidylat 93.2 0.042 1.4E-06 51.4 3.0 21 126-146 2-22 (195)
339 1s96_A Guanylate kinase, GMP k 93.2 0.046 1.6E-06 52.3 3.3 24 123-146 15-38 (219)
340 4e22_A Cytidylate kinase; P-lo 93.2 0.047 1.6E-06 53.6 3.5 23 124-146 27-49 (252)
341 1tue_A Replication protein E1; 93.1 0.068 2.3E-06 49.8 4.2 38 105-147 44-81 (212)
342 1htw_A HI0065; nucleotide-bind 93.1 0.06 2E-06 48.5 3.7 24 123-146 32-55 (158)
343 1aky_A Adenylate kinase; ATP:A 93.1 0.046 1.6E-06 52.5 3.2 24 124-147 4-27 (220)
344 1rj9_A FTSY, signal recognitio 93.1 0.051 1.7E-06 54.9 3.6 24 123-146 101-124 (304)
345 1v5w_A DMC1, meiotic recombina 93.1 0.22 7.5E-06 51.3 8.5 25 123-147 121-145 (343)
346 2wsm_A Hydrogenase expression/ 93.1 0.068 2.3E-06 51.2 4.4 41 101-147 13-53 (221)
347 1nn5_A Similar to deoxythymidy 93.1 0.048 1.6E-06 52.0 3.3 23 124-146 9-31 (215)
348 1sky_E F1-ATPase, F1-ATP synth 93.1 0.15 5E-06 54.2 7.2 23 125-147 152-174 (473)
349 2wwf_A Thymidilate kinase, put 93.1 0.047 1.6E-06 51.9 3.2 24 124-147 10-33 (212)
350 2ged_A SR-beta, signal recogni 93.0 0.078 2.7E-06 49.4 4.6 25 123-147 47-71 (193)
351 1g41_A Heat shock protein HSLU 93.0 0.096 3.3E-06 55.5 5.7 51 97-147 15-73 (444)
352 2f6r_A COA synthase, bifunctio 93.0 0.058 2E-06 54.0 3.9 24 123-146 74-97 (281)
353 2f1r_A Molybdopterin-guanine d 93.0 0.034 1.2E-06 50.8 2.0 22 125-146 3-24 (171)
354 1sq5_A Pantothenate kinase; P- 93.0 0.11 3.8E-06 52.7 6.0 24 123-146 79-102 (308)
355 3k1j_A LON protease, ATP-depen 93.0 0.072 2.4E-06 59.8 5.0 43 97-147 41-83 (604)
356 1v43_A Sugar-binding transport 93.0 0.53 1.8E-05 48.7 11.1 23 124-146 37-59 (372)
357 3p32_A Probable GTPase RV1496/ 92.9 0.11 3.6E-06 54.0 5.8 37 106-146 65-101 (355)
358 3kl4_A SRP54, signal recogniti 92.9 1 3.5E-05 47.5 13.3 24 123-146 96-119 (433)
359 3fb4_A Adenylate kinase; psych 92.9 0.051 1.7E-06 51.9 3.0 22 126-147 2-23 (216)
360 3e70_C DPA, signal recognition 92.9 0.1 3.5E-06 53.2 5.5 25 122-146 127-151 (328)
361 1zd8_A GTP:AMP phosphotransfer 92.8 0.051 1.7E-06 52.4 3.0 24 124-147 7-30 (227)
362 2z0h_A DTMP kinase, thymidylat 92.8 0.054 1.8E-06 50.8 3.0 22 126-147 2-23 (197)
363 1gtv_A TMK, thymidylate kinase 92.7 0.033 1.1E-06 53.2 1.5 21 126-146 2-22 (214)
364 1zu4_A FTSY; GTPase, signal re 92.7 0.14 4.7E-06 52.1 6.2 43 104-146 77-127 (320)
365 2it1_A 362AA long hypothetical 92.7 0.51 1.7E-05 48.7 10.5 23 124-146 29-51 (362)
366 3dl0_A Adenylate kinase; phosp 92.7 0.055 1.9E-06 51.7 3.0 22 126-147 2-23 (216)
367 1m7g_A Adenylylsulfate kinase; 92.7 0.066 2.3E-06 50.9 3.6 25 123-147 24-48 (211)
368 3dzd_A Transcriptional regulat 92.7 0.23 7.9E-06 51.7 8.0 47 97-147 129-175 (368)
369 1vma_A Cell division protein F 92.6 0.13 4.4E-06 51.9 5.8 44 103-146 81-126 (306)
370 1vht_A Dephospho-COA kinase; s 92.6 0.07 2.4E-06 51.0 3.7 23 124-146 4-26 (218)
371 2v54_A DTMP kinase, thymidylat 92.6 0.062 2.1E-06 50.7 3.2 23 125-147 5-27 (204)
372 1zak_A Adenylate kinase; ATP:A 92.5 0.055 1.9E-06 52.0 2.7 24 124-147 5-28 (222)
373 2px0_A Flagellar biosynthesis 92.5 0.069 2.4E-06 53.7 3.5 24 123-146 104-127 (296)
374 4a74_A DNA repair and recombin 92.4 0.069 2.4E-06 51.5 3.4 24 123-146 24-47 (231)
375 3nwj_A ATSK2; P loop, shikimat 92.4 0.055 1.9E-06 52.9 2.6 22 125-146 49-70 (250)
376 3d3q_A TRNA delta(2)-isopenten 92.3 0.07 2.4E-06 54.3 3.3 23 125-147 8-30 (340)
377 3ake_A Cytidylate kinase; CMP 92.3 0.067 2.3E-06 50.6 3.0 21 126-146 4-24 (208)
378 3b9q_A Chloroplast SRP recepto 92.3 0.08 2.7E-06 53.4 3.7 24 123-146 99-122 (302)
379 2i3b_A HCR-ntpase, human cance 92.2 0.062 2.1E-06 50.0 2.7 22 126-147 3-24 (189)
380 3be4_A Adenylate kinase; malar 92.2 0.058 2E-06 51.6 2.5 23 125-147 6-28 (217)
381 2og2_A Putative signal recogni 92.2 0.16 5.4E-06 52.4 5.9 24 123-146 156-179 (359)
382 3lnc_A Guanylate kinase, GMP k 92.2 0.051 1.8E-06 52.6 2.2 22 124-145 27-48 (231)
383 2ehv_A Hypothetical protein PH 92.2 0.071 2.4E-06 52.2 3.2 24 123-146 29-52 (251)
384 1np6_A Molybdopterin-guanine d 92.2 0.074 2.5E-06 48.7 3.0 24 123-146 5-28 (174)
385 2onk_A Molybdate/tungstate ABC 92.1 0.075 2.6E-06 51.6 3.2 22 125-146 25-46 (240)
386 2yhs_A FTSY, cell division pro 92.1 0.16 5.5E-06 54.3 5.9 24 123-146 292-315 (503)
387 3tif_A Uncharacterized ABC tra 92.1 0.079 2.7E-06 51.3 3.3 23 124-146 31-53 (235)
388 3rfe_A Platelet glycoprotein I 92.0 0.19 6.6E-06 43.4 5.4 33 491-524 32-65 (130)
389 3dm5_A SRP54, signal recogniti 92.0 0.18 6.1E-06 53.3 6.1 24 123-146 99-122 (443)
390 2pcj_A ABC transporter, lipopr 92.0 0.074 2.5E-06 51.1 2.9 22 125-146 31-52 (224)
391 2xxa_A Signal recognition part 91.9 0.18 6.1E-06 53.6 6.1 44 103-146 76-122 (433)
392 3b5x_A Lipid A export ATP-bind 91.9 0.46 1.6E-05 52.9 9.7 23 124-146 369-391 (582)
393 3a8t_A Adenylate isopentenyltr 91.8 0.11 3.7E-06 52.7 4.0 25 123-147 39-63 (339)
394 2cbz_A Multidrug resistance-as 91.7 0.09 3.1E-06 51.0 3.3 23 124-146 31-53 (237)
395 1e4v_A Adenylate kinase; trans 91.7 0.084 2.9E-06 50.3 3.0 22 126-147 2-23 (214)
396 1n0w_A DNA repair protein RAD5 91.7 0.1 3.6E-06 50.6 3.7 24 123-146 23-46 (243)
397 1a7j_A Phosphoribulokinase; tr 91.7 0.051 1.7E-06 54.6 1.4 24 123-146 4-27 (290)
398 4akg_A Glutathione S-transfera 91.7 3 0.0001 54.3 17.8 224 127-396 1270-1537(2695)
399 3b85_A Phosphate starvation-in 91.7 0.071 2.4E-06 50.5 2.4 21 126-146 24-44 (208)
400 2xb4_A Adenylate kinase; ATP-b 91.6 0.087 3E-06 50.6 3.0 22 126-147 2-23 (223)
401 1ny5_A Transcriptional regulat 91.6 0.67 2.3E-05 48.6 10.1 46 98-147 138-183 (387)
402 1yrb_A ATP(GTP)binding protein 91.6 0.11 3.9E-06 51.1 4.0 24 122-145 12-35 (262)
403 3crm_A TRNA delta(2)-isopenten 91.6 0.093 3.2E-06 53.0 3.2 24 124-147 5-28 (323)
404 3exa_A TRNA delta(2)-isopenten 91.6 0.11 3.6E-06 52.1 3.6 24 124-147 3-26 (322)
405 3gfo_A Cobalt import ATP-bindi 91.5 0.088 3E-06 52.2 3.0 22 125-146 35-56 (275)
406 1ak2_A Adenylate kinase isoenz 91.5 0.1 3.4E-06 50.6 3.3 24 124-147 16-39 (233)
407 3foz_A TRNA delta(2)-isopenten 91.5 0.12 4E-06 51.7 3.8 25 123-147 9-33 (316)
408 1b0u_A Histidine permease; ABC 91.5 0.099 3.4E-06 51.6 3.3 23 124-146 32-54 (262)
409 1mv5_A LMRA, multidrug resista 91.4 0.11 3.8E-06 50.5 3.6 24 123-146 27-50 (243)
410 1svm_A Large T antigen; AAA+ f 91.4 0.17 5.9E-06 52.6 5.1 24 123-146 168-191 (377)
411 4g1u_C Hemin import ATP-bindin 91.3 0.096 3.3E-06 51.7 3.0 23 124-146 37-59 (266)
412 2olj_A Amino acid ABC transpor 91.3 0.11 3.6E-06 51.3 3.3 23 124-146 50-72 (263)
413 3llm_A ATP-dependent RNA helic 91.3 1.9 6.6E-05 41.3 12.4 32 105-144 65-96 (235)
414 2qmh_A HPR kinase/phosphorylas 91.3 0.12 4.1E-06 47.9 3.3 24 124-147 34-57 (205)
415 1ltq_A Polynucleotide kinase; 91.3 0.11 3.6E-06 52.6 3.4 22 125-146 3-24 (301)
416 2wji_A Ferrous iron transport 91.2 0.12 4.2E-06 46.7 3.5 23 125-147 4-26 (165)
417 2vp4_A Deoxynucleoside kinase; 91.2 0.12 4E-06 50.0 3.5 26 122-147 18-43 (230)
418 3io5_A Recombination and repai 91.2 0.18 6.1E-06 50.5 4.8 77 126-202 30-121 (333)
419 1ji0_A ABC transporter; ATP bi 91.2 0.1 3.5E-06 50.7 3.0 22 125-146 33-54 (240)
420 1oix_A RAS-related protein RAB 91.2 0.1 3.6E-06 48.6 3.0 24 124-147 29-52 (191)
421 1g8f_A Sulfate adenylyltransfe 91.2 0.16 5.4E-06 54.9 4.7 47 97-147 372-418 (511)
422 1sgw_A Putative ABC transporte 91.2 0.087 3E-06 50.1 2.4 22 125-146 36-57 (214)
423 2d2e_A SUFC protein; ABC-ATPas 91.2 0.11 3.7E-06 50.9 3.2 22 125-146 30-51 (250)
424 1g6h_A High-affinity branched- 91.2 0.1 3.5E-06 51.3 3.0 22 125-146 34-55 (257)
425 2w0m_A SSO2452; RECA, SSPF, un 91.1 0.11 3.6E-06 50.2 3.1 23 124-146 23-45 (235)
426 2v9p_A Replication protein E1; 91.1 0.11 3.9E-06 52.1 3.3 24 123-146 125-148 (305)
427 3end_A Light-independent proto 91.1 0.12 4.3E-06 52.3 3.7 25 122-146 39-63 (307)
428 2dyk_A GTP-binding protein; GT 91.1 0.13 4.5E-06 46.0 3.5 23 125-147 2-24 (161)
429 2eyu_A Twitching motility prot 91.1 0.14 4.7E-06 50.5 3.8 107 123-235 24-136 (261)
430 2ghi_A Transport protein; mult 91.0 0.12 4E-06 51.0 3.3 22 125-146 47-68 (260)
431 2zej_A Dardarin, leucine-rich 91.0 0.1 3.6E-06 48.2 2.8 22 126-147 4-25 (184)
432 2pze_A Cystic fibrosis transme 91.0 0.11 3.7E-06 50.1 3.0 22 125-146 35-56 (229)
433 1vpl_A ABC transporter, ATP-bi 91.0 0.12 4.1E-06 50.7 3.3 23 124-146 41-63 (256)
434 2zu0_C Probable ATP-dependent 91.0 0.13 4.3E-06 50.9 3.5 23 124-146 46-68 (267)
435 3rfe_A Platelet glycoprotein I 90.9 0.27 9.3E-06 42.4 5.2 46 454-502 19-67 (130)
436 2ixe_A Antigen peptide transpo 90.9 0.12 4.1E-06 51.2 3.3 23 124-146 45-67 (271)
437 3vkw_A Replicase large subunit 90.8 0.55 1.9E-05 49.5 8.3 104 121-230 158-268 (446)
438 2v3c_C SRP54, signal recogniti 90.8 0.16 5.5E-06 53.9 4.3 42 105-146 77-121 (432)
439 1q3t_A Cytidylate kinase; nucl 90.8 0.13 4.4E-06 49.9 3.3 24 123-146 15-38 (236)
440 3f9v_A Minichromosome maintena 90.8 0.083 2.8E-06 58.9 2.2 51 97-147 295-350 (595)
441 3hr8_A Protein RECA; alpha and 90.8 0.5 1.7E-05 48.6 7.8 80 123-202 60-149 (356)
442 2qi9_C Vitamin B12 import ATP- 90.7 0.12 4.1E-06 50.4 3.0 22 125-146 27-48 (249)
443 2yz2_A Putative ABC transporte 90.7 0.13 4.4E-06 50.8 3.3 23 124-146 33-55 (266)
444 2nq2_C Hypothetical ABC transp 90.6 0.12 4.2E-06 50.5 3.0 22 125-146 32-53 (253)
445 1nlf_A Regulatory protein REPA 90.6 0.12 4.1E-06 51.6 2.9 23 124-146 30-52 (279)
446 2j37_W Signal recognition part 90.5 0.28 9.7E-06 53.0 5.9 42 105-146 79-123 (504)
447 1ls1_A Signal recognition part 90.5 0.16 5.4E-06 51.1 3.7 24 123-146 97-120 (295)
448 2f9l_A RAB11B, member RAS onco 90.5 0.13 4.6E-06 48.1 3.0 24 124-147 5-28 (199)
449 2ihy_A ABC transporter, ATP-bi 90.5 0.13 4.4E-06 51.2 3.0 22 125-146 48-69 (279)
450 3bk7_A ABC transporter ATP-bin 90.4 1.9 6.3E-05 48.0 12.6 113 125-237 383-537 (607)
451 1cr0_A DNA primase/helicase; R 90.4 0.15 5E-06 51.4 3.4 23 124-146 35-57 (296)
452 3nh6_A ATP-binding cassette SU 90.3 0.13 4.4E-06 51.9 2.8 23 124-146 80-102 (306)
453 3bh0_A DNAB-like replicative h 90.3 1.8 6.1E-05 43.8 11.5 25 123-147 67-91 (315)
454 1j8m_F SRP54, signal recogniti 90.3 0.23 7.7E-06 49.9 4.7 23 124-146 98-120 (297)
455 3sop_A Neuronal-specific septi 90.2 0.15 5E-06 50.5 3.2 21 126-146 4-24 (270)
456 4eaq_A DTMP kinase, thymidylat 90.1 0.18 6.2E-06 48.6 3.7 25 123-147 25-49 (229)
457 2wjg_A FEOB, ferrous iron tran 90.0 0.18 6.1E-06 46.6 3.5 25 123-147 6-30 (188)
458 3upu_A ATP-dependent DNA helic 90.0 0.29 9.9E-06 52.8 5.6 22 126-147 47-68 (459)
459 2ce2_X GTPase HRAS; signaling 90.0 0.15 5.1E-06 45.7 2.9 22 126-147 5-26 (166)
460 2lkc_A Translation initiation 89.9 0.21 7.3E-06 45.5 3.8 25 123-147 7-31 (178)
461 3eph_A TRNA isopentenyltransfe 89.9 0.18 6E-06 52.5 3.5 23 125-147 3-25 (409)
462 1tq4_A IIGP1, interferon-induc 89.8 0.18 6.1E-06 53.1 3.6 24 123-146 68-91 (413)
463 2ocp_A DGK, deoxyguanosine kin 89.8 0.18 6.3E-06 48.9 3.5 24 124-147 2-25 (241)
464 2nzj_A GTP-binding protein REM 89.7 0.18 6E-06 45.9 3.1 24 124-147 4-27 (175)
465 2pjz_A Hypothetical protein ST 89.7 0.16 5.5E-06 50.0 3.0 22 125-146 31-52 (263)
466 3cr8_A Sulfate adenylyltranfer 89.7 0.25 8.5E-06 54.2 4.8 25 123-147 368-392 (552)
467 1z2a_A RAS-related protein RAB 89.7 0.19 6.5E-06 45.3 3.3 24 124-147 5-28 (168)
468 1svi_A GTP-binding protein YSX 89.6 0.22 7.6E-06 46.3 3.8 25 123-147 22-46 (195)
469 3qf4_A ABC transporter, ATP-bi 89.6 0.59 2E-05 52.0 7.9 23 124-146 369-391 (587)
470 1pzn_A RAD51, DNA repair and r 89.6 0.25 8.6E-06 50.9 4.5 24 123-146 130-153 (349)
471 2afh_E Nitrogenase iron protei 89.5 0.2 7E-06 50.2 3.6 23 124-146 2-24 (289)
472 2r8r_A Sensor protein; KDPD, P 89.5 0.24 8.3E-06 47.0 3.8 22 125-146 7-28 (228)
473 3con_A GTPase NRAS; structural 89.4 0.18 6E-06 46.8 2.9 23 125-147 22-44 (190)
474 2yv5_A YJEQ protein; hydrolase 89.4 0.26 9.1E-06 49.6 4.4 31 106-145 156-186 (302)
475 3kta_A Chromosome segregation 89.4 0.19 6.6E-06 46.2 3.2 21 126-146 28-48 (182)
476 1cp2_A CP2, nitrogenase iron p 89.4 0.2 6.7E-06 49.6 3.4 22 125-146 2-23 (269)
477 2dr3_A UPF0273 protein PH0284; 89.4 0.18 6.1E-06 49.1 3.0 24 123-146 22-45 (247)
478 2bbs_A Cystic fibrosis transme 89.3 0.19 6.6E-06 50.2 3.2 23 124-146 64-86 (290)
479 2gj8_A MNME, tRNA modification 89.2 0.23 8E-06 45.2 3.6 23 125-147 5-27 (172)
480 1fzq_A ADP-ribosylation factor 89.2 0.24 8.2E-06 45.5 3.6 25 123-147 15-39 (181)
481 1nrj_B SR-beta, signal recogni 89.1 0.22 7.5E-06 47.3 3.4 25 123-147 11-35 (218)
482 3ch4_B Pmkase, phosphomevalona 89.1 0.27 9.3E-06 45.7 3.8 25 122-146 9-33 (202)
483 3q85_A GTP-binding protein REM 89.1 0.21 7.1E-06 45.1 3.0 21 126-146 4-24 (169)
484 2qm8_A GTPase/ATPase; G protei 89.0 0.37 1.3E-05 49.4 5.2 24 123-146 54-77 (337)
485 3q72_A GTP-binding protein RAD 89.0 0.18 6.3E-06 45.3 2.7 22 126-147 4-25 (166)
486 2p67_A LAO/AO transport system 89.0 0.42 1.5E-05 49.1 5.7 24 123-146 55-78 (341)
487 3pqc_A Probable GTP-binding pr 89.0 0.26 9E-06 45.6 3.8 25 123-147 22-46 (195)
488 2erx_A GTP-binding protein DI- 89.0 0.21 7.1E-06 45.2 3.0 23 125-147 4-26 (172)
489 1u8z_A RAS-related protein RAL 89.0 0.2 6.9E-06 45.0 2.9 24 124-147 4-27 (168)
490 2aka_B Dynamin-1; fusion prote 88.9 0.51 1.7E-05 47.4 6.1 42 106-147 8-49 (299)
491 1z08_A RAS-related protein RAB 88.8 0.21 7.1E-06 45.1 2.9 24 124-147 6-29 (170)
492 4a1f_A DNAB helicase, replicat 88.8 1.9 6.6E-05 43.8 10.3 25 123-147 45-69 (338)
493 1c1y_A RAS-related protein RAP 88.8 0.21 7.3E-06 44.8 2.9 23 125-147 4-26 (167)
494 1ek0_A Protein (GTP-binding pr 88.7 0.22 7.4E-06 44.9 2.9 22 126-147 5-26 (170)
495 3fvq_A Fe(3+) IONS import ATP- 88.7 0.24 8.1E-06 50.9 3.4 22 125-146 31-52 (359)
496 3ihw_A Centg3; RAS, centaurin, 88.7 0.22 7.4E-06 46.0 2.9 25 123-147 19-43 (184)
497 1f6b_A SAR1; gtpases, N-termin 88.7 0.26 8.8E-06 46.2 3.5 24 124-147 25-48 (198)
498 1kao_A RAP2A; GTP-binding prot 88.7 0.22 7.5E-06 44.7 2.9 23 125-147 4-26 (167)
499 1z0j_A RAB-22, RAS-related pro 88.6 0.22 7.5E-06 44.9 2.9 23 125-147 7-29 (170)
500 4gzl_A RAS-related C3 botulinu 88.6 0.26 8.8E-06 46.4 3.4 25 123-147 29-53 (204)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=7.4e-45 Score=408.83 Aligned_cols=305 Identities=19% Similarity=0.279 Sum_probs=242.7
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHc--ccchhhhhhh-------------HHHHHHHH
Q 035555 100 FGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYN--NDDVKKILRK-------------EYGIARAI 164 (767)
Q Consensus 100 vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~-------------~~~i~~~i 164 (767)
|||++++++|.++|.... +...++|+|+||||+||||||+++|+ +.+++.+|+. ...++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999997542 23679999999999999999999998 5678888864 46788899
Q ss_pred HHHhhCCCC-------CccchHHHHHHHHHhcCCC-eEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCchhHHh
Q 035555 165 IEALTYSSS-------NFVEFQSLMQHIQKHVAGK-KLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKETVAR 236 (767)
Q Consensus 165 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 236 (767)
+.+++.... ...+.+++...+++.|+++ ||||||||||+.+...|.. .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 999876421 1234566789999999996 9999999999854322321 27999999999999998
Q ss_pred hhc-CcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHHhHHhcCCCHHHHHHHHhhh
Q 035555 237 IMG-SADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIASLLRSKNTEKEWQNILESE 315 (767)
Q Consensus 237 ~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~~~~ 315 (767)
.++ ....|++++|+.++||+||.+.++.... .+.+++++++|+++|+|+||||+++|+.++.+ . .+|...+.+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHH
Confidence 776 3467999999999999999999876432 46778899999999999999999999999776 3 2343444433
Q ss_pred cccchhhhhhhhhhHHhhcccCCHHHHHHHH-----------HhccCCCCcccChHHHHHHHHHc--CCccCCC-CCcHH
Q 035555 316 IWEIEEVEKNLLAPLLLSYNELPSKVKQCFT-----------YCAIFPKNSKIWKDKLIELWMAQ--GFLNNKR-SKEME 381 (767)
Q Consensus 316 ~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~-----------~~s~fp~~~~i~~~~li~~w~a~--g~~~~~~-~~~~~ 381 (767)
.+.. ....+..++.+||++||+++|.||. |||+||+++.|+ +.+|+|+ ||+.... ....+
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 3322 2456999999999999999999999 999999999998 8899999 9998765 55677
Q ss_pred HHHHHHHHHHHhcCCCcccccCCCCCEEEEEeChHHHHHHHHhhccceE
Q 035555 382 EIGEEYFNILASRSFFQDFERGYDGKIYQCKVHDIVHDFAQFLCRKECL 430 (767)
Q Consensus 382 ~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~e~~ 430 (767)
++++ ||++|+++||++....+ ...+|+|||++|++|+.++.+++.
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 7777 99999999999986543 335699999999999999887653
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-36 Score=378.86 Aligned_cols=304 Identities=23% Similarity=0.312 Sum_probs=238.3
Q ss_pred CCCCCCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccch-hhhhhh-------------
Q 035555 91 ISSIDESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDV-KKILRK------------- 156 (767)
Q Consensus 91 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~------------- 156 (767)
..|.++..||||++++++|.++|.... .+.++|+|+||||+||||||+++|++.+. ..+|..
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 193 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKS 193 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCch
Confidence 345566789999999999999997653 37899999999999999999999997543 344542
Q ss_pred -HHHHHHHHHHHhhCCC----CCccchHHHHHHHHHhcCCC--eEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEc
Q 035555 157 -EYGIARAIIEALTYSS----SNFVEFQSLMQHIQKHVAGK--KLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITT 229 (767)
Q Consensus 157 -~~~i~~~i~~~l~~~~----~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt 229 (767)
....+..++..+.... ....+.+++...++..+.++ |+||||||||+. .. +...++||+|||||
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~-------~~~~~~~~~ilvTt 264 (1249)
T 3sfz_A 194 GLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WV-------LKAFDNQCQILLTT 264 (1249)
T ss_dssp HHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HH-------HTTTCSSCEEEEEE
T ss_pred HHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HH-------HHhhcCCCEEEEEc
Confidence 3344556666665432 22356778889999999877 999999999964 22 23346899999999
Q ss_pred CchhHHhh-hcCcceEecCC-CChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHHhHHhcCCCHHH
Q 035555 230 RKETVARI-MGSADIISVNV-LSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIASLLRSKNTEKE 307 (767)
Q Consensus 230 R~~~v~~~-~~~~~~~~l~~-L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~ 307 (767)
|++.++.. ++....+++++ |+.++|++||...++... +...+++++|+++|+|+||||+++|++|+.+.. .
T Consensus 265 R~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~--~ 337 (1249)
T 3sfz_A 265 RDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFPN--R 337 (1249)
T ss_dssp SSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSS--C
T ss_pred CCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChh--H
Confidence 99998854 45567899996 999999999998874322 233456899999999999999999999998762 4
Q ss_pred HHHHHhhhcccc--------hhhhhhhhhhHHhhcccCCHHHHHHHHHhccCCCCcccChHHHHHHHHHcCCccCCCCCc
Q 035555 308 WQNILESEIWEI--------EEVEKNLLAPLLLSYNELPSKVKQCFTYCAIFPKNSKIWKDKLIELWMAQGFLNNKRSKE 379 (767)
Q Consensus 308 w~~~~~~~~~~~--------~~~~~~i~~~l~~sy~~L~~~~k~~f~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~ 379 (767)
|...++...... ......+..+|.+||+.||+++|.||++||+||+++.|+++.++.+|.++
T Consensus 338 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~---------- 407 (1249)
T 3sfz_A 338 WAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE---------- 407 (1249)
T ss_dssp HHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC----------
T ss_pred HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC----------
Confidence 655554322111 11125699999999999999999999999999999999999999999543
Q ss_pred HHHHHHHHHHHHHhcCCCcccccCCCCCEEEEEeChHHHHHHHHhhccc
Q 035555 380 MEEIGEEYFNILASRSFFQDFERGYDGKIYQCKVHDIVHDFAQFLCRKE 428 (767)
Q Consensus 380 ~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~e 428 (767)
++.++.++++|+++||++.... +...+|+||+++|++++..+.++
T Consensus 408 -~~~~~~~l~~L~~~sl~~~~~~---~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 -TEEVEDILQEFVNKSLLFCNRN---GKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp -HHHHHHHHHHHHHTTSCEEEES---SSSEEEECCHHHHHHHHHHTGGG
T ss_pred -HHHHHHHHHHHHhccceEEecC---CCceEEEecHHHHHHHHhhhhHH
Confidence 4678899999999999986543 33457999999999999987765
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.5e-36 Score=343.55 Aligned_cols=274 Identities=19% Similarity=0.189 Sum_probs=213.4
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhh------------HHHHHHHHH
Q 035555 98 EIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK------------EYGIARAII 165 (767)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~------------~~~i~~~i~ 165 (767)
..|||++++++|.++|.... +.++|+|+||||+||||||+++|++.+++.+|+. ...++..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 35999999999999997532 4789999999999999999999988778888875 445666666
Q ss_pred HHhhCCC---C--------CccchHHHHHHHHHhc---CCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCc
Q 035555 166 EALTYSS---S--------NFVEFQSLMQHIQKHV---AGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRK 231 (767)
Q Consensus 166 ~~l~~~~---~--------~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 231 (767)
+.+.... . ...+.+++...+++.+ .++|+||||||||+. ..|+.+ + +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccC
Confidence 5433210 0 0123455666777755 789999999999973 455443 2 68999999999
Q ss_pred hhHHhhhcCcceEecC------CCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHHhHHhcCC-C
Q 035555 232 ETVARIMGSADIISVN------VLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIASLLRSKN-T 304 (767)
Q Consensus 232 ~~v~~~~~~~~~~~l~------~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~-~ 304 (767)
+.++..+.....+.++ +|+.+|||+||.+.. +.. . .++..+| |+|+||||+++|+.|+.+. +
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPREV---LTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSS
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC----H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCC
Confidence 9988655444455666 899999999999984 221 1 1123333 9999999999999999885 6
Q ss_pred HHHHHHHHhhhcccchhhhhhhhhhHHhhcccCCHHH-HHHHHHhccCCCCcccChHHHHHHHHHcCCccCCCCCcHHHH
Q 035555 305 EKEWQNILESEIWEIEEVEKNLLAPLLLSYNELPSKV-KQCFTYCAIFPKNSKIWKDKLIELWMAQGFLNNKRSKEMEEI 383 (767)
Q Consensus 305 ~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~~f~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~ 383 (767)
.+.|... ....+..+|.+||+.||++. |.||++||+||+++.|+++.++.+|+++| ++.
T Consensus 344 ~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eed 403 (1221)
T 1vt4_I 344 WDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSD 403 (1221)
T ss_dssp HHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHH
T ss_pred HHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHH
Confidence 7788653 23569999999999999999 99999999999999999999999998876 135
Q ss_pred HHHHHHHHHhcCCCcccccCCCCCEEEEEeChHHHHHH
Q 035555 384 GEEYFNILASRSFFQDFERGYDGKIYQCKVHDIVHDFA 421 (767)
Q Consensus 384 ~~~~l~~L~~~sll~~~~~~~~~~~~~~~mHdlv~~~a 421 (767)
++.++++|+++||++.... ...|+|||++++++
T Consensus 404 Ae~~L~eLvdRSLLq~d~~-----~~rYrMHDLllELr 436 (1221)
T 1vt4_I 404 VMVVVNKLHKYSLVEKQPK-----ESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHTSSSSSBCSS-----SSEEBCCCHHHHHH
T ss_pred HHHHHHHHHhhCCEEEeCC-----CCEEEehHHHHHHh
Confidence 8899999999999997421 24689999999855
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=7.1e-33 Score=316.55 Aligned_cols=299 Identities=22% Similarity=0.292 Sum_probs=224.1
Q ss_pred CCCCCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccch-hhhhhh-----------HHH
Q 035555 92 SSIDESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDV-KKILRK-----------EYG 159 (767)
Q Consensus 92 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~-----------~~~ 159 (767)
.|..+..||||++++++|.++|.... .+.++|+|+||||+||||||.+++++.++ ..+|.. ...
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~ 194 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSG 194 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHH
T ss_pred CCCCCCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHH
Confidence 34556789999999999999997542 26789999999999999999999997655 667742 222
Q ss_pred HHHH---HHHHhhCC----CCCccchHHHHHHHHHhcCC--CeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcC
Q 035555 160 IARA---IIEALTYS----SSNFVEFQSLMQHIQKHVAG--KKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTR 230 (767)
Q Consensus 160 i~~~---i~~~l~~~----~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR 230 (767)
+... ++..++.. .....+.+.+...+...+.+ +++||||||||+. ..+ ...++|++||||||
T Consensus 195 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----~~l----~~l~~~~~ilvTsR 265 (591)
T 1z6t_A 195 LLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----WVL----KAFDSQCQILLTTR 265 (591)
T ss_dssp HHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----HHH----HTTCSSCEEEEEES
T ss_pred HHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----HHH----HHhcCCCeEEEECC
Confidence 3333 33344321 12234566777778877765 7899999999863 222 22367899999999
Q ss_pred chhHHhhhcCcceEec---CCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHHhHHhcCCCHHH
Q 035555 231 KETVARIMGSADIISV---NVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIASLLRSKNTEKE 307 (767)
Q Consensus 231 ~~~v~~~~~~~~~~~l---~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~ 307 (767)
+..++..+. ...+++ ++|+.+++++||...++... ....+.+.+|+++|+|+||||+++|+.++.+.. .
T Consensus 266 ~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~--~ 337 (591)
T 1z6t_A 266 DKSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFPN--R 337 (591)
T ss_dssp CGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTT--C
T ss_pred CcHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCch--h
Confidence 998876543 233444 58999999999999875321 122345889999999999999999999988753 5
Q ss_pred HHHHHhhhcccc--------hhhhhhhhhhHHhhcccCCHHHHHHHHHhccCCCCcccChHHHHHHHHHcCCccCCCCCc
Q 035555 308 WQNILESEIWEI--------EEVEKNLLAPLLLSYNELPSKVKQCFTYCAIFPKNSKIWKDKLIELWMAQGFLNNKRSKE 379 (767)
Q Consensus 308 w~~~~~~~~~~~--------~~~~~~i~~~l~~sy~~L~~~~k~~f~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~ 379 (767)
|...++...... ......+..++.+||+.||++.|.||.++|+||+++.|+.+.+..+|.+.
T Consensus 338 w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~---------- 407 (591)
T 1z6t_A 338 WEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME---------- 407 (591)
T ss_dssp HHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC----------
T ss_pred HHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC----------
Confidence 766555332111 11234789999999999999999999999999999999999999999432
Q ss_pred HHHHHHHHHHHHHhcCCCcccccCCCCCEEEEEeChHHHHHHHHhh
Q 035555 380 MEEIGEEYFNILASRSFFQDFERGYDGKIYQCKVHDIVHDFAQFLC 425 (767)
Q Consensus 380 ~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~mHdlv~~~a~~~~ 425 (767)
.+.++.++++|+++||++.... +....|.||+++|++++...
T Consensus 408 -~~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 408 -TEEVEDILQEFVNKSLLFCDRN---GKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEEE---TTEEEEECCHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHhCcCeEEecC---CCccEEEEcHHHHHHHHhhh
Confidence 2457889999999999985432 23457999999999998774
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=5.5e-22 Score=208.19 Aligned_cols=225 Identities=22% Similarity=0.243 Sum_probs=165.4
Q ss_pred eeeeeccC--CCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCC
Q 035555 446 CRRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDY 523 (767)
Q Consensus 446 ~L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~ 523 (767)
.++.|+++ .+..+|..++++++|++|+|++|. +..+|..++++++|++|+|++|. +..+|..++.+++|++|++++
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEEEE
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEECCC
Confidence 44555554 455667667777777777777776 55677667777777777777766 556676777777777777776
Q ss_pred CCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEec
Q 035555 524 TNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFD 603 (767)
Q Consensus 524 ~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 603 (767)
|..+..+|..++.. .+ ...+.++++|+.|++++|
T Consensus 160 n~~~~~~p~~~~~~---------------------------------~~-------------~~~~~~l~~L~~L~L~~n 193 (328)
T 4fcg_A 160 CPELTELPEPLAST---------------------------------DA-------------SGEHQGLVNLQSLRLEWT 193 (328)
T ss_dssp ETTCCCCCSCSEEE---------------------------------C--------------CCCEEESTTCCEEEEEEE
T ss_pred CCCccccChhHhhc---------------------------------cc-------------hhhhccCCCCCEEECcCC
Confidence 65555555443210 00 012455678888999999
Q ss_pred CCccCCccccCCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeecc
Q 035555 604 CNVIPKNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFS 683 (767)
Q Consensus 604 ~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 683 (767)
....+|.++..+++|+.|+|++|......+.++.+++|++|++++|.....++.. +..+++|+.|+|+
T Consensus 194 ~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~------------~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 194 GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI------------FGGRAPLKRLILK 261 (328)
T ss_dssp CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCC------------TTCCCCCCEEECT
T ss_pred CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHH------------hcCCCCCCEEECC
Confidence 8888898899999999999998865443345788999999999998866655543 2378999999999
Q ss_pred CccccccCccCCccccccccCcccceEeeccCccccCCCcCCCCCCCCcEEEe
Q 035555 684 YMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHI 736 (767)
Q Consensus 684 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l 736 (767)
+|..+..++. .+..+++|+.|+|++|+.++.+|..+..+++|+.+.+
T Consensus 262 ~n~~~~~~p~------~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 262 DCSNLLTLPL------DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp TCTTCCBCCT------TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred CCCchhhcch------hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence 9875554443 4678999999999999999999999999999999998
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=2.9e-22 Score=235.44 Aligned_cols=309 Identities=16% Similarity=0.132 Sum_probs=158.8
Q ss_pred cCceeeeeccCCC--c-ccccccccCC-cccEEeecCCccccccchhhcC--CCCCcEEEccCCccccccCcccccCcCC
Q 035555 443 LIKCRRWRCDNYI--K-EIPTNIEKLI-HLKYLNLSSQKKIKRLPETLCE--LYNLECLAISFCTNLRQLPQGIGKLRKL 516 (767)
Q Consensus 443 ~~~~L~~l~l~~~--~-~lp~~~~~l~-~L~~L~L~~~~~~~~lp~~~~~--l~~L~~L~L~~~~~l~~lp~~~~~l~~L 516 (767)
.++.|+.|+++.. . .+|..+.+++ +|++|++++|.....+|..++. +++|++|++++|.....+|..++.+++|
T Consensus 341 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L 420 (768)
T 3rgz_A 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420 (768)
T ss_dssp TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTC
T ss_pred cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCC
Confidence 4556666666532 2 4566666665 6666666666633445555554 5666666666666444566666666666
Q ss_pred cEeeCCCCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcC
Q 035555 517 MYLDNDYTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLF 596 (767)
Q Consensus 517 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~ 596 (767)
++|++++|.....+|..++.+++|+.|.+..+... +.....+..+++|+.|.+++..- ....+..+.++++|+
T Consensus 421 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~---~~~p~~~~~l~~L~~L~L~~N~l----~~~~p~~l~~l~~L~ 493 (768)
T 3rgz_A 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE---GEIPQELMYVKTLETLILDFNDL----TGEIPSGLSNCTNLN 493 (768)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC---SCCCGGGGGCTTCCEEECCSSCC----CSCCCGGGGGCTTCC
T ss_pred CEEECcCCcccCcccHHHhcCCCCCEEECCCCccc---CcCCHHHcCCCCceEEEecCCcc----cCcCCHHHhcCCCCC
Confidence 66666666333355555666666666554433322 23344455556666666555321 111223455556666
Q ss_pred ceEEEecCCc-cCCccccCCCCccEEEEeccCCCCCCCC-CCCCCCCCeeeecCCCCceEecccccCCCC----------
Q 035555 597 DLELRFDCNV-IPKNWIMSLTNLRYLSLSLFKNCEQLLP-LGKLQSLEYLQIGGMHGVKRVGNEFLGVES---------- 664 (767)
Q Consensus 597 ~L~l~~~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~---------- 664 (767)
.|++++|... .+|.++..+++|+.|+|++|.....+|. ++.+++|++|++++|+-...+|..+.....
T Consensus 494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~ 573 (768)
T 3rgz_A 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSC
T ss_pred EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccc
Confidence 6666666554 5556666666666666666544434442 555666666666655422223222111000
Q ss_pred ------------------------------------------------------------------------CCCCcccc
Q 035555 665 ------------------------------------------------------------------------DTNGSSVI 672 (767)
Q Consensus 665 ------------------------------------------------------------------------~~~~~~~~ 672 (767)
...+..++
T Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~ 653 (768)
T 3rgz_A 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653 (768)
T ss_dssp EEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGG
T ss_pred cccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHh
Confidence 00011233
Q ss_pred CCcccceeeccCccccccCccCCccccccccCcccceEeeccCccccCCCcCCCCCCCCcEEEecCCC------------
Q 035555 673 AFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGC------------ 740 (767)
Q Consensus 673 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c------------ 740 (767)
.+++|+.|+|++|. +.+..|..++.+++|+.|+|++|.....+|..+..+++|+.|++ ++|
T Consensus 654 ~l~~L~~L~Ls~N~------l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l-s~N~l~g~iP~~~~~ 726 (768)
T 3rgz_A 654 SMPYLFILNLGHND------ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL-SNNNLSGPIPEMGQF 726 (768)
T ss_dssp GCTTCCEEECCSSC------CCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC-CSSEEEEECCSSSSG
T ss_pred ccccCCEEeCcCCc------cCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC-cCCcccccCCCchhh
Confidence 44555555555542 22334456677788888888887544477777777888888888 333
Q ss_pred -----------chh----HHhhcccCCCCCCcccccCcce
Q 035555 741 -----------PIF----RERYREETGEDWPKIRHIPNIE 765 (767)
Q Consensus 741 -----------~~l----~~~~~~~~~~~~~~i~hip~i~ 765 (767)
|.+ -..|....+++|++|+|+|.++
T Consensus 727 ~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 727 ETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp GGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred ccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 211 1157778899999999999875
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=6.4e-21 Score=222.46 Aligned_cols=275 Identities=13% Similarity=0.081 Sum_probs=169.2
Q ss_pred ccCceeeeeccCCC---c--ccccccccCC-------cccEEeecCCccccccch--hhcCCCCCcEEEccCCccccccC
Q 035555 442 KLIKCRRWRCDNYI---K--EIPTNIEKLI-------HLKYLNLSSQKKIKRLPE--TLCELYNLECLAISFCTNLRQLP 507 (767)
Q Consensus 442 ~~~~~L~~l~l~~~---~--~lp~~~~~l~-------~L~~L~L~~~~~~~~lp~--~~~~l~~L~~L~L~~~~~l~~lp 507 (767)
..++.|+.|+++.. . .+|..++++. +|++|+|++|. +..+|. .++++++|++|+|++|. +..+|
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp 589 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE 589 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC
T ss_pred hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch
Confidence 46778888888743 3 4776666655 88888888888 668887 78888888888888887 55788
Q ss_pred cccccCcCCcEeeCCCCCCcccccccCcCCcC-CcccceeEecCccCCCCChhhhhcC--CCCCCeeeeCCCCCC-----
Q 035555 508 QGIGKLRKLMYLDNDYTNSLRYLPVGIRELIR-LRRVRKFVVGGGYDRACSLESLKRL--ILLRECRIHGLGDVS----- 579 (767)
Q Consensus 508 ~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~-L~~L~~~~~~~~~~~~~~~~~l~~l--~~L~~L~i~~l~~~~----- 579 (767)
.++.+++|++|++++| .+..+|..+..+++ |+.|.+..+..... ...+..+ ++|+.|.+++..-..
T Consensus 590 -~~~~L~~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N~L~~l----p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l 663 (876)
T 4ecn_A 590 -AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNKLKYI----PNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663 (876)
T ss_dssp -CCCTTSEESEEECCSS-CCSCCCTTSCEECTTCCEEECCSSCCCSC----CSCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred -hhcCCCcceEEECcCC-ccccchHHHhhccccCCEEECcCCCCCcC----chhhhccccCCCCEEECcCCcCCCccccc
Confidence 7788888888888887 45577877777777 87776655443321 1111222 124444443321100
Q ss_pred --------------------ChhhhHHhhccCCCCcCceEEEecCCccCCccccCC--------CCccEEEEeccCCCCC
Q 035555 580 --------------------DVGEARRAELEKKKNLFDLELRFDCNVIPKNWIMSL--------TNLRYLSLSLFKNCEQ 631 (767)
Q Consensus 580 --------------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l--------~~L~~L~L~~~~~~~~ 631 (767)
.........+..+++|+.|+|+.|.+..+|.++... ++|+.|+|++|. +..
T Consensus 664 ~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~ 742 (876)
T 4ecn_A 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTS 742 (876)
T ss_dssp SSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCC
T ss_pred hhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC-Ccc
Confidence 000001111224555666666666555555443321 256666666553 224
Q ss_pred CCC-CC--CCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCccCCccccccccCcccc
Q 035555 632 LLP-LG--KLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLS 708 (767)
Q Consensus 632 l~~-l~--~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~ 708 (767)
+|. +. .+++|+.|+|++|. ++.++. .+..+++|+.|+|++|+.+..-......|..+..+++|+
T Consensus 743 lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~------------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~ 809 (876)
T 4ecn_A 743 LSDDFRATTLPYLSNMDVSYNC-FSSFPT------------QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809 (876)
T ss_dssp CCGGGSTTTCTTCCEEECCSSC-CSSCCC------------GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred chHHhhhccCCCcCEEEeCCCC-CCccch------------hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCC
Confidence 443 33 56666666666654 333332 234788888888887653332223333455677899999
Q ss_pred eEeeccCccccCCCcCCCCCCCCcEEEecCCCch
Q 035555 709 CLIIFGCFKLKALPDLLLQKTTLQKLHIWGGCPI 742 (767)
Q Consensus 709 ~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c~~ 742 (767)
.|+|++| .++.+|..+. ++|+.|+| ++||.
T Consensus 810 ~L~Ls~N-~L~~Ip~~l~--~~L~~LdL-s~N~l 839 (876)
T 4ecn_A 810 QLQIGSN-DIRKVDEKLT--PQLYILDI-ADNPN 839 (876)
T ss_dssp EEECCSS-CCCBCCSCCC--SSSCEEEC-CSCTT
T ss_pred EEECCCC-CCCccCHhhc--CCCCEEEC-CCCCC
Confidence 9999998 5688998764 69999999 77763
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=208.56 Aligned_cols=253 Identities=19% Similarity=0.163 Sum_probs=132.5
Q ss_pred cccccCCcccEEeecCCccccccch-hhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCcccccccCcCCc
Q 035555 460 TNIEKLIHLKYLNLSSQKKIKRLPE-TLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPVGIRELI 538 (767)
Q Consensus 460 ~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~ 538 (767)
..|+++++|++|+|++|. ++.+|. .+.++++|++|+|++|......|..+..+++|++|++++|......|..+..++
T Consensus 74 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 152 (477)
T 2id5_A 74 GAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152 (477)
T ss_dssp TTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCT
T ss_pred hhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCC
Confidence 344444444444444444 444432 234444444444444442222233444444444444444421112223344444
Q ss_pred CCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCc-cCCccccCCCC
Q 035555 539 RLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNV-IPKNWIMSLTN 617 (767)
Q Consensus 539 ~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~l~~ 617 (767)
+|+.|.+..+... ......+..+++|+.|.+.+.. ........+..+++|+.|++++|... .+|.......+
T Consensus 153 ~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~l~~n~----i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 153 SLEQLTLEKCNLT---SIPTEALSHLHGLIVLRLRHLN----INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp TCCEEEEESCCCS---SCCHHHHTTCTTCCEEEEESCC----CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred CCCEEECCCCcCc---ccChhHhcccCCCcEEeCCCCc----CcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence 4444443332221 1122234444455555444421 11111123445555555555554432 23333333446
Q ss_pred ccEEEEeccCCCCCCC--CCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCccCC
Q 035555 618 LRYLSLSLFKNCEQLL--PLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGT 695 (767)
Q Consensus 618 L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~ 695 (767)
|+.|+|++| .++.+| .+..+++|++|+|++|. ++.++... +..+++|+.|+|++| .+..+
T Consensus 226 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-----------~~~l~~L~~L~L~~n-~l~~~---- 287 (477)
T 2id5_A 226 LTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSM-----------LHELLRLQEIQLVGG-QLAVV---- 287 (477)
T ss_dssp CSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTS-----------CTTCTTCCEEECCSS-CCSEE----
T ss_pred ccEEECcCC-cccccCHHHhcCccccCeeECCCCc-CCccChhh-----------ccccccCCEEECCCC-ccceE----
Confidence 666666655 334444 25667777777777776 44444322 247888999999887 34433
Q ss_pred ccccccccCcccceEeeccCccccCCCc-CCCCCCCCcEEEecCCCc
Q 035555 696 ATKGEIIIMPRLSCLIIFGCFKLKALPD-LLLQKTTLQKLHIWGGCP 741 (767)
Q Consensus 696 ~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~~~~l~sL~~L~l~~~c~ 741 (767)
.+..+..+++|+.|+|++| .++.+|. .+..+++|+.|++ .++|
T Consensus 288 -~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l-~~N~ 331 (477)
T 2id5_A 288 -EPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLIL-DSNP 331 (477)
T ss_dssp -CTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEEC-CSSC
T ss_pred -CHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEc-cCCC
Confidence 3345678999999999998 6777774 4678899999999 6554
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.85 E-value=3.1e-21 Score=221.30 Aligned_cols=268 Identities=13% Similarity=0.134 Sum_probs=149.8
Q ss_pred ceeeeeccC--CCccccc--ccccCCcccEEeecCCcccc-ccchhhcCCCCCcEEEccCCccccccCcccccCcC-CcE
Q 035555 445 KCRRWRCDN--YIKEIPT--NIEKLIHLKYLNLSSQKKIK-RLPETLCELYNLECLAISFCTNLRQLPQGIGKLRK-LMY 518 (767)
Q Consensus 445 ~~L~~l~l~--~~~~lp~--~~~~l~~L~~L~L~~~~~~~-~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~-L~~ 518 (767)
+.|+.|+++ .+..+|. .++++++|++|++++|. +. .+| .++++++|++|++++|. +..+|..+..+++ |++
T Consensus 305 ~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~ 381 (636)
T 4eco_A 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVEN 381 (636)
T ss_dssp GTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCC-CEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCE
T ss_pred CCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCc-Cccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcE
Confidence 444555444 2334554 55555555555555555 33 455 45555555555555554 4455555555555 555
Q ss_pred eeCCCCCCcccccccCcCCc--CCcccceeEecCccCCCCChhhhh-------cCCCCCCeeeeCCCCCCChhhhHHhhc
Q 035555 519 LDNDYTNSLRYLPVGIRELI--RLRRVRKFVVGGGYDRACSLESLK-------RLILLRECRIHGLGDVSDVGEARRAEL 589 (767)
Q Consensus 519 L~l~~~~~l~~lp~~~~~l~--~L~~L~~~~~~~~~~~~~~~~~l~-------~l~~L~~L~i~~l~~~~~~~~~~~~~l 589 (767)
|++++| .+..+|..++.+. +|+.|++..+... +.....+. .+++|+.|.+++.. +.. .....+
T Consensus 382 L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~---~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~---lp~~~~ 453 (636)
T 4eco_A 382 LSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIG---SVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISK---FPKELF 453 (636)
T ss_dssp EECCSS-CCSSCCSCCCTTCSSCEEEEECCSSCTT---TTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCS---CCTHHH
T ss_pred EEccCC-cCcccchhhhhcccCccCEEECcCCcCC---CcchhhhcccccccccCCCCCEEECcCCc-cCc---CCHHHH
Confidence 555555 3345554443332 4444443332222 11112222 33455555555421 111 111223
Q ss_pred cCCCCcCceEEEecCCccCCccccC-C-------CCccEEEEeccCCCCCCCC-CC--CCCCCCeeeecCCCCceEeccc
Q 035555 590 EKKKNLFDLELRFDCNVIPKNWIMS-L-------TNLRYLSLSLFKNCEQLLP-LG--KLQSLEYLQIGGMHGVKRVGNE 658 (767)
Q Consensus 590 ~~~~~L~~L~l~~~~~~~~p~~~~~-l-------~~L~~L~L~~~~~~~~l~~-l~--~l~~L~~L~L~~~~~l~~~~~~ 658 (767)
..+++|+.|++++|....+|..+.. . ++|+.|+|++|.. ..+|. +. .+++|++|+|++|. ++.++..
T Consensus 454 ~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~ 531 (636)
T 4eco_A 454 STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQ 531 (636)
T ss_dssp HTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCC-CBCCGGGSTTTCTTCCEEECCSSC-CSSCCCG
T ss_pred ccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcC-CccChhhhhccCCCcCEEECCCCC-CCCcChh
Confidence 4466777777777776666654332 1 2777777777643 35553 33 67777777777776 3334433
Q ss_pred ccCCCCCCCCccccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCccccCCCcCCCCCCCCcEEEecC
Q 035555 659 FLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWG 738 (767)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~ 738 (767)
+..+++|+.|+|++|..+..-...+..+..+..+++|+.|+|++| .++.+|..+. ++|+.|++ +
T Consensus 532 ------------~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~L-s 595 (636)
T 4eco_A 532 ------------PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKIT--PNISVLDI-K 595 (636)
T ss_dssp ------------GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC--TTCCEEEC-C
T ss_pred ------------hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCccCHhHh--CcCCEEEC-c
Confidence 347889999999765433222233334456778999999999999 5699998765 89999999 7
Q ss_pred CCc
Q 035555 739 GCP 741 (767)
Q Consensus 739 ~c~ 741 (767)
+||
T Consensus 596 ~N~ 598 (636)
T 4eco_A 596 DNP 598 (636)
T ss_dssp SCT
T ss_pred CCC
Confidence 775
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=2.4e-21 Score=226.09 Aligned_cols=279 Identities=13% Similarity=0.107 Sum_probs=190.9
Q ss_pred ccCceeeeeccC--CCcc------------------cccccc--cCCcccEEeecCCccccccchhhcCCCCCcEEEccC
Q 035555 442 KLIKCRRWRCDN--YIKE------------------IPTNIE--KLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISF 499 (767)
Q Consensus 442 ~~~~~L~~l~l~--~~~~------------------lp~~~~--~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~ 499 (767)
..++.|+.|+++ .+.. +|..++ ++++|++|+|++|.....+|..++++++|++|+|++
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence 467788888887 4555 888877 999999999999987788898899999999999999
Q ss_pred Ccccc--ccCcccccCc-------CCcEeeCCCCCCcccccc--cCcCCcCCcccceeEecCccCCCCChhhhhcCCCCC
Q 035555 500 CTNLR--QLPQGIGKLR-------KLMYLDNDYTNSLRYLPV--GIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLR 568 (767)
Q Consensus 500 ~~~l~--~lp~~~~~l~-------~L~~L~l~~~~~l~~lp~--~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~ 568 (767)
|..+. .+|..++.++ +|++|++++| .+..+|. .++.+++|+.|.+..+... .++.+..+++|+
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-----~lp~~~~L~~L~ 598 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVR-----HLEAFGTNVKLT 598 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCC-----BCCCCCTTSEES
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCcc-----cchhhcCCCcce
Confidence 87343 5887777665 8999999988 5568888 7888888888876554433 223667777888
Q ss_pred CeeeeCCCCCCChhhhHHhhccCCCC-cCceEEEecCCccCCccccCCC--CccEEEEeccCCCCCCCCCC------CCC
Q 035555 569 ECRIHGLGDVSDVGEARRAELEKKKN-LFDLELRFDCNVIPKNWIMSLT--NLRYLSLSLFKNCEQLLPLG------KLQ 639 (767)
Q Consensus 569 ~L~i~~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~p~~~~~l~--~L~~L~L~~~~~~~~l~~l~------~l~ 639 (767)
.|.+++..- . ..+..+..+++ |+.|++++|....+|.++..++ +|+.|+|++|.....+|.+. .++
T Consensus 599 ~L~Ls~N~l-~----~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 599 DLKLDYNQI-E----EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp EEECCSSCC-S----CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred EEECcCCcc-c----cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 888776321 1 22345677777 8888888888877787766543 48888888776544443322 234
Q ss_pred CCCeeeecCCCCceEecccccC-CCCCC-----------CCc--------cccCCcccceeeccCccccccCccCCcccc
Q 035555 640 SLEYLQIGGMHGVKRVGNEFLG-VESDT-----------NGS--------SVIAFPKLRELKFSYMEELEEWDFGTATKG 699 (767)
Q Consensus 640 ~L~~L~L~~~~~l~~~~~~~~~-~~~~~-----------~~~--------~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~ 699 (767)
+|++|+|++|. ++.++..+.. ..... .+. ...++++|+.|+|++| .+..++.
T Consensus 674 ~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~------ 745 (876)
T 4ecn_A 674 NASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSD------ 745 (876)
T ss_dssp CEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCG------
T ss_pred CcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC-CCccchH------
Confidence 56666665554 3333322210 00000 000 0123458888888887 4554432
Q ss_pred ccc--cCcccceEeeccCccccCCCcCCCCCCCCcEEEecCCCc
Q 035555 700 EII--IMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGCP 741 (767)
Q Consensus 700 ~~~--~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c~ 741 (767)
.+. .+++|+.|+|++| .+..+|..+..+++|+.|++ ++|+
T Consensus 746 ~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~L-s~N~ 787 (876)
T 4ecn_A 746 DFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGI-RHQR 787 (876)
T ss_dssp GGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEEC-CCCB
T ss_pred HhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEEC-CCCC
Confidence 343 7889999999988 67778888888899999999 6654
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=1.6e-20 Score=199.39 Aligned_cols=258 Identities=17% Similarity=0.206 Sum_probs=162.3
Q ss_pred ccCceeeeeccC--CCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEe
Q 035555 442 KLIKCRRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYL 519 (767)
Q Consensus 442 ~~~~~L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L 519 (767)
..++.|+.|+++ .+..+|. +..+++|++|++++|. ++.+| .+.++++|++|++++|. +..+|. +..+++|++|
T Consensus 63 ~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L 137 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELYLNEDN-ISDISP-LANLTKMYSL 137 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEE
T ss_pred hhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEEECcCCc-ccCchh-hccCCceeEE
Confidence 356778888887 3555665 8888888888888887 77765 47888888888888887 666665 7788888888
Q ss_pred eCCCCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceE
Q 035555 520 DNDYTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLE 599 (767)
Q Consensus 520 ~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 599 (767)
++++|.....++ .+..+++|+.|.+..+... .+..+..+++|+.|.+++..- ... ..+..+++|+.|+
T Consensus 138 ~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~-----~~~~~~~l~~L~~L~l~~n~l-~~~-----~~~~~l~~L~~L~ 205 (347)
T 4fmz_A 138 NLGANHNLSDLS-PLSNMTGLNYLTVTESKVK-----DVTPIANLTDLYSLSLNYNQI-EDI-----SPLASLTSLHYFT 205 (347)
T ss_dssp ECTTCTTCCCCG-GGTTCTTCCEEECCSSCCC-----CCGGGGGCTTCSEEECTTSCC-CCC-----GGGGGCTTCCEEE
T ss_pred ECCCCCCccccc-chhhCCCCcEEEecCCCcC-----CchhhccCCCCCEEEccCCcc-ccc-----ccccCCCccceee
Confidence 888885544443 3677777777765544332 223366777777777766421 111 1155666777777
Q ss_pred EEecCCccCCccccCCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccce
Q 035555 600 LRFDCNVIPKNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRE 679 (767)
Q Consensus 600 l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 679 (767)
+++|.....+. +..+++|+.|++++|. +..++.+..+++|++|++++|. ++.++. +..+++|+.
T Consensus 206 l~~n~l~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~-------------~~~l~~L~~ 269 (347)
T 4fmz_A 206 AYVNQITDITP-VANMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTNQ-ISDINA-------------VKDLTKLKM 269 (347)
T ss_dssp CCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGG-------------GTTCTTCCE
T ss_pred cccCCCCCCch-hhcCCcCCEEEccCCc-cCCCcchhcCCCCCEEECCCCc-cCCChh-------------HhcCCCcCE
Confidence 77766655544 5566777777777663 3444446667777777777664 333211 235666666
Q ss_pred eeccCccccccCccCCccccccccCcccceEeeccCccccCCCcCCCCCCCCcEEEecCCCc
Q 035555 680 LKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGCP 741 (767)
Q Consensus 680 L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c~ 741 (767)
|++++| .+.+++ .+..+++|+.|++++|......|..+..+++|+.|++ .+|+
T Consensus 270 L~l~~n-~l~~~~-------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L-~~n~ 322 (347)
T 4fmz_A 270 LNVGSN-QISDIS-------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL-SQNH 322 (347)
T ss_dssp EECCSS-CCCCCG-------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEEC-CSSS
T ss_pred EEccCC-ccCCCh-------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEc-cCCc
Confidence 666666 343332 2345666666666666332233344555666666666 5554
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=2.4e-20 Score=198.03 Aligned_cols=258 Identities=15% Similarity=0.164 Sum_probs=177.0
Q ss_pred ccCceeeeeccC--CCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEe
Q 035555 442 KLIKCRRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYL 519 (767)
Q Consensus 442 ~~~~~L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L 519 (767)
..++.|+.|+++ .+..+| .+.++++|++|++++|. +..+|. +..+++|++|++++|..+..++ .+..+++|++|
T Consensus 85 ~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L 160 (347)
T 4fmz_A 85 SNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYL 160 (347)
T ss_dssp TTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEE
T ss_pred hcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEE
Confidence 467778888877 344554 57888888888888887 777766 7788888888888887555544 47788888888
Q ss_pred eCCCCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceE
Q 035555 520 DNDYTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLE 599 (767)
Q Consensus 520 ~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 599 (767)
++++| .+..++. +..+++|+.|++..+... .+..+..+++|+.+.+.+..- ... ..+..+++|+.|+
T Consensus 161 ~l~~~-~~~~~~~-~~~l~~L~~L~l~~n~l~-----~~~~~~~l~~L~~L~l~~n~l-~~~-----~~~~~~~~L~~L~ 227 (347)
T 4fmz_A 161 TVTES-KVKDVTP-IANLTDLYSLSLNYNQIE-----DISPLASLTSLHYFTAYVNQI-TDI-----TPVANMTRLNSLK 227 (347)
T ss_dssp ECCSS-CCCCCGG-GGGCTTCSEEECTTSCCC-----CCGGGGGCTTCCEEECCSSCC-CCC-----GGGGGCTTCCEEE
T ss_pred EecCC-CcCCchh-hccCCCCCEEEccCCccc-----ccccccCCCccceeecccCCC-CCC-----chhhcCCcCCEEE
Confidence 88887 4555544 667777777765443332 233367777777777766321 111 1166778888888
Q ss_pred EEecCCccCCccccCCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccce
Q 035555 600 LRFDCNVIPKNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRE 679 (767)
Q Consensus 600 l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 679 (767)
+++|.....|. +..+++|+.|++++| .++.++.+..+++|++|++++|. ++.++. +..+++|+.
T Consensus 228 l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~-------------~~~l~~L~~ 291 (347)
T 4fmz_A 228 IGNNKITDLSP-LANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ-ISDISV-------------LNNLSQLNS 291 (347)
T ss_dssp CCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-------------GGGCTTCSE
T ss_pred ccCCccCCCcc-hhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCc-cCCChh-------------hcCCCCCCE
Confidence 88887776665 677888888888877 44556667788888888888875 444321 236788888
Q ss_pred eeccCccccccCccCCccccccccCcccceEeeccCccccCCCcCCCCCCCCcEEEecCCCc
Q 035555 680 LKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGCP 741 (767)
Q Consensus 680 L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c~ 741 (767)
|++++|. +... .+..+..+++|+.|++++|+ ++.++. +..+++|+.|++ .+|+
T Consensus 292 L~L~~n~-l~~~-----~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l-~~N~ 344 (347)
T 4fmz_A 292 LFLNNNQ-LGNE-----DMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADF-ANQV 344 (347)
T ss_dssp EECCSSC-CCGG-----GHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESS-SCC-
T ss_pred EECcCCc-CCCc-----ChhHhhccccCCEEEccCCc-cccccC-hhhhhccceeeh-hhhc
Confidence 8888873 3322 22345678888888888884 665554 666888888888 6665
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=1.5e-20 Score=207.70 Aligned_cols=128 Identities=20% Similarity=0.200 Sum_probs=88.0
Q ss_pred CCcCceEEEecCCcc-CCccccCCCCccEEEEeccCCCCCCC-CCCCCCCCCeeeecCCCCceEecccccCCCCCCCCcc
Q 035555 593 KNLFDLELRFDCNVI-PKNWIMSLTNLRYLSLSLFKNCEQLL-PLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSS 670 (767)
Q Consensus 593 ~~L~~L~l~~~~~~~-~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 670 (767)
++|+.|++++|.... .|.++..+++|+.|+|++|......+ .++.+++|++|++++|. ++.++...
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~----------- 342 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRM----------- 342 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGG-----------
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcChhH-----------
Confidence 355555555555432 45566777888888887775433333 36778888888888776 44443322
Q ss_pred ccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCccccCCCc-CCCCCCCCcEEEecCCC
Q 035555 671 VIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPD-LLLQKTTLQKLHIWGGC 740 (767)
Q Consensus 671 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~~~~l~sL~~L~l~~~c 740 (767)
+..+++|++|+|++| .+..+ .+..+..+++|+.|++++| .++.+|. .+..+++|+.|++ .+|
T Consensus 343 ~~~l~~L~~L~Ls~N-~l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l-~~N 405 (455)
T 3v47_A 343 FENLDKLEVLDLSYN-HIRAL-----GDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWL-HTN 405 (455)
T ss_dssp GTTCTTCCEEECCSS-CCCEE-----CTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC-CSS
T ss_pred hcCcccCCEEECCCC-ccccc-----ChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEc-cCC
Confidence 247889999999998 34433 3335678999999999998 6777775 4578999999999 543
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=2.7e-21 Score=221.85 Aligned_cols=280 Identities=12% Similarity=0.089 Sum_probs=182.3
Q ss_pred ccCceeeeeccC--CCcc------------------cccccc--cCCcccEEeecCCccccccchhhcCCCCCcEEEccC
Q 035555 442 KLIKCRRWRCDN--YIKE------------------IPTNIE--KLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISF 499 (767)
Q Consensus 442 ~~~~~L~~l~l~--~~~~------------------lp~~~~--~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~ 499 (767)
..++.|++|+++ .+.. +|..++ ++++|++|++++|...+.+|..++++++|++|++++
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence 467788888877 4555 888888 888899999988886778888888888899999888
Q ss_pred Cccc-c-ccCcccccC------cCCcEeeCCCCCCcccccc--cCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCC
Q 035555 500 CTNL-R-QLPQGIGKL------RKLMYLDNDYTNSLRYLPV--GIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRE 569 (767)
Q Consensus 500 ~~~l-~-~lp~~~~~l------~~L~~L~l~~~~~l~~lp~--~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~ 569 (767)
|..+ . .+|..++.+ ++|++|++++| .+..+|. .++.+++|+.|.+..+.... .. ..+..+++|+.
T Consensus 283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g---~i-p~~~~l~~L~~ 357 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEG---KL-PAFGSEIKLAS 357 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEE---EC-CCCEEEEEESE
T ss_pred CCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCcc---ch-hhhCCCCCCCE
Confidence 8734 3 588877776 88888888888 5568887 78888888888766544431 11 15566667777
Q ss_pred eeeeCCCCCCChhhhHHhhccCCCC-cCceEEEecCCccCCccccCC--CCccEEEEeccCCCCCCCC-CC-------CC
Q 035555 570 CRIHGLGDVSDVGEARRAELEKKKN-LFDLELRFDCNVIPKNWIMSL--TNLRYLSLSLFKNCEQLLP-LG-------KL 638 (767)
Q Consensus 570 L~i~~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~p~~~~~l--~~L~~L~L~~~~~~~~l~~-l~-------~l 638 (767)
|.+++.. .. ..+..+..+++ |+.|++++|....+|.++..+ ++|+.|++++|......|. +. .+
T Consensus 358 L~L~~N~----l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 358 LNLAYNQ----IT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp EECCSSE----EE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred EECCCCc----cc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 7766532 11 22334666667 777777777777777666543 3677777776654443332 33 45
Q ss_pred CCCCeeeecCCCCceEecccccC-CCCCC-----------CCc--------cccCCcccceeeccCccccccCccCCccc
Q 035555 639 QSLEYLQIGGMHGVKRVGNEFLG-VESDT-----------NGS--------SVIAFPKLRELKFSYMEELEEWDFGTATK 698 (767)
Q Consensus 639 ~~L~~L~L~~~~~l~~~~~~~~~-~~~~~-----------~~~--------~~~~~~~L~~L~L~~~~~l~~~~~~~~~~ 698 (767)
++|++|++++|. ++.++..... ..... .+. ....+++|+.|+|++| .++.++.
T Consensus 433 ~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~----- 505 (636)
T 4eco_A 433 INVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSD----- 505 (636)
T ss_dssp CCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCG-----
T ss_pred CCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC-cCCccCh-----
Confidence 566666666654 3333332211 00000 000 0112337777777777 4443332
Q ss_pred cccc--cCcccceEeeccCccccCCCcCCCCCCCCcEEEecCCCc
Q 035555 699 GEII--IMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGCP 741 (767)
Q Consensus 699 ~~~~--~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c~ 741 (767)
.+. .+++|+.|++++| .++.+|..+..+++|+.|++ .+|+
T Consensus 506 -~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L-s~N~ 547 (636)
T 4eco_A 506 -DFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGI-RNQR 547 (636)
T ss_dssp -GGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEEC-CSCB
T ss_pred -hhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEEC-CCCc
Confidence 333 7888888888888 56668888888888888888 5544
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=4e-20 Score=205.44 Aligned_cols=268 Identities=19% Similarity=0.174 Sum_probs=204.8
Q ss_pred ceeeeeccC--CCccc-ccccccCCcccEEeecCCcccccc-chhhcCCCCCcEEEccCCccccccCcc-cccCcCCcEe
Q 035555 445 KCRRWRCDN--YIKEI-PTNIEKLIHLKYLNLSSQKKIKRL-PETLCELYNLECLAISFCTNLRQLPQG-IGKLRKLMYL 519 (767)
Q Consensus 445 ~~L~~l~l~--~~~~l-p~~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~~L 519 (767)
+.++.|+++ .+..+ |..|.++++|++|+|++|. ++.+ |..+.++++|++|+|++|. +..+|.. +..+++|++|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEE
Confidence 467888887 45566 4689999999999999998 6655 7789999999999999998 7777764 6889999999
Q ss_pred eCCCCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceE
Q 035555 520 DNDYTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLE 599 (767)
Q Consensus 520 ~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 599 (767)
++++|......|..+..+++|+.|.+..+... ......+..+++|+.|.+.+.. +. ......+.++++|+.|+
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~-l~---~~~~~~l~~l~~L~~L~ 182 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLV---YISHRAFSGLNSLEQLTLEKCN-LT---SIPTEALSHLHGLIVLR 182 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCC---EECTTSSTTCTTCCEEEEESCC-CS---SCCHHHHTTCTTCCEEE
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccc---eeChhhccCCCCCCEEECCCCc-Cc---ccChhHhcccCCCcEEe
Confidence 99999444444667888999999877654443 2233456778889999988742 11 22234577889999999
Q ss_pred EEecCCccCC-ccccCCCCccEEEEeccCCCCCCCC-CCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCccc
Q 035555 600 LRFDCNVIPK-NWIMSLTNLRYLSLSLFKNCEQLLP-LGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKL 677 (767)
Q Consensus 600 l~~~~~~~~p-~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L 677 (767)
++.|.....+ ..+..+++|+.|++++|.....++. ....++|++|++++|. ++.++... +..+++|
T Consensus 183 l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~-----------~~~l~~L 250 (477)
T 2id5_A 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLA-----------VRHLVYL 250 (477)
T ss_dssp EESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHH-----------HTTCTTC
T ss_pred CCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHH-----------hcCcccc
Confidence 9999876554 4567899999999999887777665 4456699999999986 55555322 2378999
Q ss_pred ceeeccCccccccCccCCccccccccCcccceEeeccCccccCCCcCCCCCCCCcEEEecCCC
Q 035555 678 RELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGC 740 (767)
Q Consensus 678 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c 740 (767)
+.|+|++|. +..+. +..+..+++|+.|+|++|......|..+..+++|+.|++ .+|
T Consensus 251 ~~L~Ls~n~-l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L-~~N 306 (477)
T 2id5_A 251 RFLNLSYNP-ISTIE-----GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV-SGN 306 (477)
T ss_dssp CEEECCSSC-CCEEC-----TTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEEC-CSS
T ss_pred CeeECCCCc-CCccC-----hhhccccccCCEEECCCCccceECHHHhcCcccCCEEEC-CCC
Confidence 999999984 54433 235678999999999999433344778888999999999 666
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.84 E-value=1e-20 Score=222.17 Aligned_cols=212 Identities=20% Similarity=0.115 Sum_probs=172.5
Q ss_pred ccCceeeeeccCC--Cc-ccccc-cccCCcccEEeecCCccccccchhhcCCC-CCcEEEccCCccccccCccccc--Cc
Q 035555 442 KLIKCRRWRCDNY--IK-EIPTN-IEKLIHLKYLNLSSQKKIKRLPETLCELY-NLECLAISFCTNLRQLPQGIGK--LR 514 (767)
Q Consensus 442 ~~~~~L~~l~l~~--~~-~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l~-~L~~L~L~~~~~l~~lp~~~~~--l~ 514 (767)
..++.|+.|+++. +. .+|.. ++++++|++|++++|.....+|..+.+++ +|++|++++|.....+|..+.. ++
T Consensus 315 ~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 394 (768)
T 3rgz_A 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394 (768)
T ss_dssp GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTC
T ss_pred hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccC
Confidence 4678899999984 33 67765 99999999999999994458999999988 9999999999966678887776 88
Q ss_pred CCcEeeCCCCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCC
Q 035555 515 KLMYLDNDYTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKN 594 (767)
Q Consensus 515 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~ 594 (767)
+|++|++++|.....+|..++.+++|+.|++..+... +.....+..+++|+.|.+.+..- ....+..+..+++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~---~~~p~~l~~l~~L~~L~L~~n~l----~~~~p~~~~~l~~ 467 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS---GTIPSSLGSLSKLRDLKLWLNML----EGEIPQELMYVKT 467 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE---SCCCGGGGGCTTCCEEECCSSCC----CSCCCGGGGGCTT
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCccc---CcccHHHhcCCCCCEEECCCCcc----cCcCCHHHcCCCC
Confidence 9999999999555578889999999999987665443 34556788899999999987432 2233456778999
Q ss_pred cCceEEEecCCc-cCCccccCCCCccEEEEeccCCCCCCCC-CCCCCCCCeeeecCCCCceEeccccc
Q 035555 595 LFDLELRFDCNV-IPKNWIMSLTNLRYLSLSLFKNCEQLLP-LGKLQSLEYLQIGGMHGVKRVGNEFL 660 (767)
Q Consensus 595 L~~L~l~~~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~ 660 (767)
|+.|++++|... .+|.++..+++|+.|+|++|.....+|. ++.+++|++|+|++|.-...++..+.
T Consensus 468 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 535 (768)
T 3rgz_A 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence 999999999987 6788999999999999999977666664 78899999999999985445655443
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.83 E-value=8.5e-20 Score=197.09 Aligned_cols=262 Identities=19% Similarity=0.140 Sum_probs=171.8
Q ss_pred cCceeeeeccC--CCcccc-cccccCCcccEEeecCCccccccc-hhhcCCCCCcEEEccCCccccccCcc-cccCcCCc
Q 035555 443 LIKCRRWRCDN--YIKEIP-TNIEKLIHLKYLNLSSQKKIKRLP-ETLCELYNLECLAISFCTNLRQLPQG-IGKLRKLM 517 (767)
Q Consensus 443 ~~~~L~~l~l~--~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~ 517 (767)
.++.|++|+++ .+..++ ..|+.+++|++|++++|. ++.+| ..+.++++|++|++++|. +..+|.. +..+++|+
T Consensus 67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLT 144 (390)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCc
Confidence 56777888777 345554 467888888888888887 55554 557788888888888877 6677765 47788888
Q ss_pred EeeCCCCCCccccc-ccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCC--------C-------CCh
Q 035555 518 YLDNDYTNSLRYLP-VGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGD--------V-------SDV 581 (767)
Q Consensus 518 ~L~l~~~~~l~~lp-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~--------~-------~~~ 581 (767)
+|++++| .+..++ ..++.+++|+.|.+..+..... .+..+++|+.+.+....- + +..
T Consensus 145 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l 217 (390)
T 3o6n_A 145 TLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV------DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 217 (390)
T ss_dssp EEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBC------CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCC
T ss_pred EEECCCC-ccCccChhhccCCCCCCEEECCCCcCCcc------ccccccccceeecccccccccCCCCcceEEECCCCee
Confidence 8888887 444443 4477777777776655443321 233344444444432100 0 000
Q ss_pred hhhHHhhccCCCCcCceEEEecCCccCCccccCCCCccEEEEeccCCCCCCC-CCCCCCCCCeeeecCCCCceEeccccc
Q 035555 582 GEARRAELEKKKNLFDLELRFDCNVIPKNWIMSLTNLRYLSLSLFKNCEQLL-PLGKLQSLEYLQIGGMHGVKRVGNEFL 660 (767)
Q Consensus 582 ~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~ 660 (767)
.. ......++|+.|++++|..... .++..+++|+.|++++|......| .+..+++|++|++++|. ++.++..+
T Consensus 218 ~~---~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~- 291 (390)
T 3o6n_A 218 NV---VRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG- 291 (390)
T ss_dssp CE---EECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSS-
T ss_pred ee---ccccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCccc-
Confidence 00 0011235677777777766554 457778888888888775433323 36778888888888876 55554322
Q ss_pred CCCCCCCCccccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCccccCCCcCCCCCCCCcEEEecCCC
Q 035555 661 GVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGC 740 (767)
Q Consensus 661 ~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c 740 (767)
..+|+|+.|+|++| .+..++. .+..+++|+.|++++| .++.+| +..+++|+.|++ .++
T Consensus 292 -----------~~l~~L~~L~L~~n-~l~~~~~------~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l-~~N 349 (390)
T 3o6n_A 292 -----------QPIPTLKVLDLSHN-HLLHVER------NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTL-SHN 349 (390)
T ss_dssp -----------SCCTTCCEEECCSS-CCCCCGG------GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEEC-CSS
T ss_pred -----------CCCCCCCEEECCCC-cceecCc------cccccCcCCEEECCCC-ccceeC--chhhccCCEEEc-CCC
Confidence 27889999999988 4554432 3567899999999998 577776 567899999999 776
Q ss_pred c
Q 035555 741 P 741 (767)
Q Consensus 741 ~ 741 (767)
|
T Consensus 350 ~ 350 (390)
T 3o6n_A 350 D 350 (390)
T ss_dssp C
T ss_pred C
Confidence 6
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.82 E-value=1e-19 Score=208.67 Aligned_cols=282 Identities=19% Similarity=0.113 Sum_probs=152.2
Q ss_pred cCceeeeeccC--CCccc-ccccccCCcccEEeecCCcccccc-chhhcCCCCCcEEEccCCccccccC-cccccCcCCc
Q 035555 443 LIKCRRWRCDN--YIKEI-PTNIEKLIHLKYLNLSSQKKIKRL-PETLCELYNLECLAISFCTNLRQLP-QGIGKLRKLM 517 (767)
Q Consensus 443 ~~~~L~~l~l~--~~~~l-p~~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~ 517 (767)
.++.|++|+++ .+..+ |..|+++++|++|++++|. ++.+ |..++++++|++|++++|. +..+| ..++.+++|+
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 131 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLK 131 (606)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCC
T ss_pred CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCC
Confidence 55666666665 24444 3456666666666666666 4444 5566666666666666666 44443 4566666666
Q ss_pred EeeCCCCCCcc--cccccCcCCcCCcccceeEecCccCCCCChhhhhcCC------------------------CCCCee
Q 035555 518 YLDNDYTNSLR--YLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLI------------------------LLRECR 571 (767)
Q Consensus 518 ~L~l~~~~~l~--~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~------------------------~L~~L~ 571 (767)
+|++++| .+. .+|..++.+++|+.|++..+.........+..+.+++ +|+.|.
T Consensus 132 ~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~ 210 (606)
T 3vq2_A 132 KLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT 210 (606)
T ss_dssp EEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred EEeCCCC-cccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeee
Confidence 6666666 333 3566666666666665544333221111222222221 222233
Q ss_pred eeCCCC------------------------------------------------------CCChhhhHHhhccCCCCcCc
Q 035555 572 IHGLGD------------------------------------------------------VSDVGEARRAELEKKKNLFD 597 (767)
Q Consensus 572 i~~l~~------------------------------------------------------~~~~~~~~~~~l~~~~~L~~ 597 (767)
+.+... .+....... .+..+++|+.
T Consensus 211 L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-~~~~l~~L~~ 289 (606)
T 3vq2_A 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV-KFHCLANVSA 289 (606)
T ss_dssp EESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG-SCGGGTTCSE
T ss_pred ccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccccccc-ccccCCCCCE
Confidence 322110 000011111 1455677777
Q ss_pred eEEEecCCccCCccccCCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCC-----------
Q 035555 598 LELRFDCNVIPKNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDT----------- 666 (767)
Q Consensus 598 L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~----------- 666 (767)
|+++++....+| ++..+++|+.|++++|.. +.+|.+ .+++|++|++++|..+..++. .......
T Consensus 290 L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~--~~l~~L~~L~ls~n~l~~ 364 (606)
T 3vq2_A 290 MSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKK--VALPSLSYLDLSRNALSF 364 (606)
T ss_dssp EEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCC--CCCTTCCEEECCSSCEEE
T ss_pred EEecCccchhhh-hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchhh--ccCCCCCEEECcCCccCC
Confidence 777777777666 677778888888887755 677766 777888888877754433211 0000000
Q ss_pred ---CCccccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCccccCCC-cCCCCCCCCcEEEecCCCc
Q 035555 667 ---NGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALP-DLLLQKTTLQKLHIWGGCP 741 (767)
Q Consensus 667 ---~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~sL~~L~l~~~c~ 741 (767)
.+..+..+++|++|++++|. +..++ ..+..+++|+.|++++|......| ..+..+++|+.|++ ++|.
T Consensus 365 ~~~~~~~~~~~~~L~~L~L~~n~-l~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l-~~n~ 435 (606)
T 3vq2_A 365 SGCCSYSDLGTNSLRHLDLSFNG-AIIMS------ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI-SYTN 435 (606)
T ss_dssp EEECCHHHHCCSCCCEEECCSCS-EEEEC------CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEEC-TTSC
T ss_pred CcchhhhhccCCcccEeECCCCc-cccch------hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEEC-cCCC
Confidence 00112344555555555542 22222 235567777888887774333334 45667788888888 6664
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=3.2e-20 Score=200.45 Aligned_cols=262 Identities=14% Similarity=0.137 Sum_probs=193.3
Q ss_pred cCceeeeeccC--CCcccccc-cccCCcccEEeecCCccccccc-hhhcCCCCCcEEEccCCccccccC-cccccCcCCc
Q 035555 443 LIKCRRWRCDN--YIKEIPTN-IEKLIHLKYLNLSSQKKIKRLP-ETLCELYNLECLAISFCTNLRQLP-QGIGKLRKLM 517 (767)
Q Consensus 443 ~~~~L~~l~l~--~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~ 517 (767)
.++.+++++++ .++.+|.. +..+++|++|++++|. ++.++ ..+.++++|++|++++|. +..+| ..++.+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCC
Confidence 45778888877 46678865 6899999999999999 77765 579999999999999998 65554 5689999999
Q ss_pred EeeCCCCCCccccccc-CcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCC--
Q 035555 518 YLDNDYTNSLRYLPVG-IRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKN-- 594 (767)
Q Consensus 518 ~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~-- 594 (767)
+|++++| .+..+|.. ++.+++|++|.+..+... ......+..+++|+.|.+++..- ... .+..+++
T Consensus 121 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l-~~~------~~~~l~~L~ 189 (390)
T 3o6n_A 121 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLE---RIEDDTFQATTSLQNLQLSSNRL-THV------DLSLIPSLF 189 (390)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC---BCCTTTTSSCTTCCEEECCSSCC-SBC------CGGGCTTCS
T ss_pred EEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccC---ccChhhccCCCCCCEEECCCCcC-Ccc------ccccccccc
Confidence 9999999 77888876 488999999987655443 23334577888899988876321 111 1233344
Q ss_pred -----------------cCceEEEecCCccCCccccCCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCCCceEecc
Q 035555 595 -----------------LFDLELRFDCNVIPKNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGN 657 (767)
Q Consensus 595 -----------------L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~ 657 (767)
|+.|++++|....+|.. .+++|+.|++++|. +...+.++.+++|++|++++|. ++.+..
T Consensus 190 ~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~Ls~n~-l~~~~~ 265 (390)
T 3o6n_A 190 HANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNN-LTDTAWLLNYPGLVEVDLSYNE-LEKIMY 265 (390)
T ss_dssp EEECCSSCCSEEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSC-CCEEES
T ss_pred eeecccccccccCCCCcceEEECCCCeeeecccc--ccccccEEECCCCC-CcccHHHcCCCCccEEECCCCc-CCCcCh
Confidence 44555555544444432 24688888888774 4556778889999999999987 444432
Q ss_pred cccCCCCCCCCccccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCccccCCCcCCCCCCCCcEEEec
Q 035555 658 EFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIW 737 (767)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~ 737 (767)
.. +..+++|+.|+|++| .++.++. ....+++|+.|++++| .++.+|..+..+++|+.|++
T Consensus 266 ~~-----------~~~l~~L~~L~L~~n-~l~~~~~------~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L- 325 (390)
T 3o6n_A 266 HP-----------FVKMQRLERLYISNN-RLVALNL------YGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYL- 325 (390)
T ss_dssp GG-----------GTTCSSCCEEECCSS-CCCEEEC------SSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEEC-
T ss_pred hH-----------ccccccCCEEECCCC-cCcccCc------ccCCCCCCCEEECCCC-cceecCccccccCcCCEEEC-
Confidence 21 237899999999998 5655443 2357899999999998 68888887778899999999
Q ss_pred CCCc
Q 035555 738 GGCP 741 (767)
Q Consensus 738 ~~c~ 741 (767)
.+|+
T Consensus 326 ~~N~ 329 (390)
T 3o6n_A 326 DHNS 329 (390)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 7775
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=5.7e-20 Score=209.64 Aligned_cols=266 Identities=18% Similarity=0.138 Sum_probs=176.1
Q ss_pred ccCceeeeeccC--CCcccc-cccccCCcccEEeecCCccccccc-hhhcCCCCCcEEEccCCccccccCcc-cccCcCC
Q 035555 442 KLIKCRRWRCDN--YIKEIP-TNIEKLIHLKYLNLSSQKKIKRLP-ETLCELYNLECLAISFCTNLRQLPQG-IGKLRKL 516 (767)
Q Consensus 442 ~~~~~L~~l~l~--~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L 516 (767)
..++.|++|+++ .+..++ ..|+.+++|++|+|++|. ++.+| ..++++++|++|+|++|. +..+|.. ++.+++|
T Consensus 72 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKL 149 (597)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCC
Confidence 356778888887 345554 478888888888888888 65554 456788888888888887 6677765 4788888
Q ss_pred cEeeCCCCCCccccc-ccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhh------------
Q 035555 517 MYLDNDYTNSLRYLP-VGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGE------------ 583 (767)
Q Consensus 517 ~~L~l~~~~~l~~lp-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~------------ 583 (767)
++|++++| .+..++ ..++.+++|+.|.+..+.... . .+..+++|+.|.+++.. +.....
T Consensus 150 ~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~---~~~~l~~L~~L~l~~n~-l~~l~~~~~L~~L~ls~n 221 (597)
T 3oja_B 150 TTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTH---V---DLSLIPSLFHANVSYNL-LSTLAIPIAVEELDASHN 221 (597)
T ss_dssp CEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSB---C---CGGGCTTCSEEECCSSC-CSEEECCTTCSEEECCSS
T ss_pred CEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCC---c---ChhhhhhhhhhhcccCc-cccccCCchhheeeccCC
Confidence 88888888 444444 457778888888665544332 1 13334445444443311 000000
Q ss_pred -hHHhhccCCCCcCceEEEecCCccCCccccCCCCccEEEEeccCCCCCCC-CCCCCCCCCeeeecCCCCceEecccccC
Q 035555 584 -ARRAELEKKKNLFDLELRFDCNVIPKNWIMSLTNLRYLSLSLFKNCEQLL-PLGKLQSLEYLQIGGMHGVKRVGNEFLG 661 (767)
Q Consensus 584 -~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~ 661 (767)
..........+|+.|++++|.... +.++..+++|+.|+|++|......| .++.+++|++|+|++|. ++.++..+
T Consensus 222 ~l~~~~~~~~~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~-- 297 (597)
T 3oja_B 222 SINVVRGPVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG-- 297 (597)
T ss_dssp CCCEEECSCCSCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSS--
T ss_pred cccccccccCCCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCccc--
Confidence 000000112467777777776554 3567788888888888875444333 37788888888888876 55554322
Q ss_pred CCCCCCCccccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCccccCCCcCCCCCCCCcEEEecCCCc
Q 035555 662 VESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGCP 741 (767)
Q Consensus 662 ~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c~ 741 (767)
..+|+|+.|+|++| .+..++. .+..+++|+.|+|++| .+..+| +..+++|+.|++ .+||
T Consensus 298 ----------~~l~~L~~L~Ls~N-~l~~i~~------~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l-~~N~ 356 (597)
T 3oja_B 298 ----------QPIPTLKVLDLSHN-HLLHVER------NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTL-SHND 356 (597)
T ss_dssp ----------SCCTTCCEEECCSS-CCCCCGG------GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEEC-CSSC
T ss_pred ----------ccCCCCcEEECCCC-CCCccCc------ccccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEe-eCCC
Confidence 26899999999998 4554432 3567899999999998 577776 556899999999 7766
Q ss_pred h
Q 035555 742 I 742 (767)
Q Consensus 742 ~ 742 (767)
-
T Consensus 357 ~ 357 (597)
T 3oja_B 357 W 357 (597)
T ss_dssp E
T ss_pred C
Confidence 3
No 21
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=1.2e-19 Score=199.01 Aligned_cols=241 Identities=21% Similarity=0.141 Sum_probs=116.0
Q ss_pred CceeeeeccC--CCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeC
Q 035555 444 IKCRRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDN 521 (767)
Q Consensus 444 ~~~L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l 521 (767)
++.|+.|+++ .+..+| .++.+++|++|++++|. ++.+| ++.+++|++|++++|. +..+| ++.+++|++|++
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~-l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNN-ITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEEC
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCc-CCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCCEEEC
Confidence 4455555555 234444 45555666666666655 55444 5555666666666555 44443 555556666666
Q ss_pred CCCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCCh------------------hh
Q 035555 522 DYTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDV------------------GE 583 (767)
Q Consensus 522 ~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~------------------~~ 583 (767)
++| .+..+| ++.+++|+.|.+..+.... + .+..+++|+.|.+.....+... ..
T Consensus 114 ~~N-~l~~l~--~~~l~~L~~L~l~~N~l~~-----l-~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 114 DTN-KLTKLD--VSQNPLLTYLNCARNTLTE-----I-DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CSS-CCSCCC--CTTCTTCCEEECTTSCCSC-----C-CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC
T ss_pred CCC-cCCeec--CCCCCcCCEEECCCCccce-----e-ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce
Confidence 555 344443 4455555555443322221 1 1334444444444433222111 00
Q ss_pred hHHhhccCCCCcCceEEEecCCccCCccccCCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCC
Q 035555 584 ARRAELEKKKNLFDLELRFDCNVIPKNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVE 663 (767)
Q Consensus 584 ~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 663 (767)
..+..+++|+.|++++|....++ +..+++|+.|++++|. ++.+| ++.+++|++|++++|. ++.++
T Consensus 185 ---l~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~-l~~ip-~~~l~~L~~L~l~~N~-l~~~~------- 249 (457)
T 3bz5_A 185 ---LDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNK-LTEID-VTPLTQLTYFDCSVNP-LTELD------- 249 (457)
T ss_dssp ---CCCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC-CTTCTTCSEEECCSSC-CSCCC-------
T ss_pred ---eccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCc-ccccC-ccccCCCCEEEeeCCc-CCCcC-------
Confidence 01344455555555555444432 4455555555555543 23344 5555666666665554 32222
Q ss_pred CCCCCccccCCcccceeeccCccccccCccCCc---cccccccCcccceEeeccCccccCCCc
Q 035555 664 SDTNGSSVIAFPKLRELKFSYMEELEEWDFGTA---TKGEIIIMPRLSCLIIFGCFKLKALPD 723 (767)
Q Consensus 664 ~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~---~~~~~~~~~~L~~L~l~~c~~l~~lp~ 723 (767)
...+++|+.|+++++ +++.+..... ..-....+++|+.|++++|+.++.+|.
T Consensus 250 -------~~~l~~L~~L~l~~n-~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 250 -------VSTLSKLTTLHCIQT-DLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp -------CTTCTTCCEEECTTC-CCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEEC
T ss_pred -------HHHCCCCCEEeccCC-CCCEEECCCCccCCcccccccccCCEEECCCCcccceecc
Confidence 124455554444433 3333322110 000123678888899988877666663
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=1.4e-20 Score=196.34 Aligned_cols=246 Identities=13% Similarity=0.067 Sum_probs=153.1
Q ss_pred ceeeeeccC--CCc---ccccccccCCcccEEeecC-CccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcE
Q 035555 445 KCRRWRCDN--YIK---EIPTNIEKLIHLKYLNLSS-QKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMY 518 (767)
Q Consensus 445 ~~L~~l~l~--~~~---~lp~~~~~l~~L~~L~L~~-~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~ 518 (767)
..++.|+++ .+. .+|..++++++|++|++++ |.....+|..++++++|++|++++|.....+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 356677766 333 5788999999999999995 7745578888999999999999999844588888999999999
Q ss_pred eeCCCCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCce
Q 035555 519 LDNDYTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDL 598 (767)
Q Consensus 519 L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L 598 (767)
|++++|.....+|..++.+++|++|.+..+... +.....+..++ ++|+.|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~---~~~p~~l~~l~---------------------------~~L~~L 179 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRIS---GAIPDSYGSFS---------------------------KLFTSM 179 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCE---EECCGGGGCCC---------------------------TTCCEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCccc---CcCCHHHhhhh---------------------------hcCcEE
Confidence 999998433477777888888888865443322 11222333333 145555
Q ss_pred EEEecCCc-cCCccccCCCCccEEEEeccCCCCCCC-CCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcc
Q 035555 599 ELRFDCNV-IPKNWIMSLTNLRYLSLSLFKNCEQLL-PLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPK 676 (767)
Q Consensus 599 ~l~~~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 676 (767)
++++|... ..|..+..++ |+.|++++|......| .++.+++|++|++++|. ++..... +..+++
T Consensus 180 ~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~------------~~~l~~ 245 (313)
T 1ogq_A 180 TISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFDLGK------------VGLSKN 245 (313)
T ss_dssp ECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE-ECCBGGG------------CCCCTT
T ss_pred ECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc-eeeecCc------------ccccCC
Confidence 55555443 4455555554 6666666654332333 25566666666666654 2211111 124566
Q ss_pred cceeeccCccccccCccCCccccccccCcccceEeeccCccccCCCcCCCCCCCCcEEEecCCCch
Q 035555 677 LRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGCPI 742 (767)
Q Consensus 677 L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c~~ 742 (767)
|++|+|++|. +. +..+..+..+++|+.|++++|.....+|.. ..+++|+.|++ .++|.
T Consensus 246 L~~L~Ls~N~-l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l-~~N~~ 303 (313)
T 1ogq_A 246 LNGLDLRNNR-IY-----GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAY-ANNKC 303 (313)
T ss_dssp CCEEECCSSC-CE-----ECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGT-CSSSE
T ss_pred CCEEECcCCc-cc-----CcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHh-cCCCC
Confidence 6666666663 22 112223556666666666666433356654 55666666666 55553
No 23
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=7e-19 Score=185.22 Aligned_cols=263 Identities=16% Similarity=0.110 Sum_probs=184.4
Q ss_pred eeeeeccC--CCcccccccccCCcccEEeecCCccccccch-hhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCC
Q 035555 446 CRRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPE-TLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDND 522 (767)
Q Consensus 446 ~L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~ 522 (767)
.+++++++ .+..+|..+. +.|++|++++|. ++.++. .+.++++|++|++++|......|..+..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 56777776 5667776664 688999999988 776664 68889999999999888333347788889999999998
Q ss_pred CCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEe
Q 035555 523 YTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRF 602 (767)
Q Consensus 523 ~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 602 (767)
+| .+..+|..+. ++|+.|.+..+... ......+..+++|+.|.++...- . ........+.++++|+.|++++
T Consensus 109 ~n-~l~~l~~~~~--~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l-~-~~~~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 109 KN-QLKELPEKMP--KTLQELRVHENEIT---KVRKSVFNGLNQMIVVELGTNPL-K-SSGIENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp SS-CCSBCCSSCC--TTCCEEECCSSCCC---BBCHHHHTTCTTCCEEECCSSCC-C-GGGBCTTGGGGCTTCCEEECCS
T ss_pred CC-cCCccChhhc--ccccEEECCCCccc---ccCHhHhcCCccccEEECCCCcC-C-ccCcChhhccCCCCcCEEECCC
Confidence 88 6677776654 67777765544333 33345577788888888876321 1 0112234567788899999998
Q ss_pred cCCccCCccccCCCCccEEEEeccCCCCCCC-CCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceee
Q 035555 603 DCNVIPKNWIMSLTNLRYLSLSLFKNCEQLL-PLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELK 681 (767)
Q Consensus 603 ~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 681 (767)
|....+|..+. ++|+.|++++|......+ .+..+++|++|++++|. ++.++... +..+++|+.|+
T Consensus 181 n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-----------~~~l~~L~~L~ 246 (330)
T 1xku_A 181 TNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGS-----------LANTPHLRELH 246 (330)
T ss_dssp SCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTT-----------GGGSTTCCEEE
T ss_pred CccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhh-----------ccCCCCCCEEE
Confidence 88887776554 789999998875333222 37788899999998887 55544321 23788899999
Q ss_pred ccCccccccCccCCccccccccCcccceEeeccCccccCCCcC-CC------CCCCCcEEEecCCCch
Q 035555 682 FSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDL-LL------QKTTLQKLHIWGGCPI 742 (767)
Q Consensus 682 L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-~~------~l~sL~~L~l~~~c~~ 742 (767)
|++| .+..++. .+..+++|+.|++++| .++.+|.. +. ..++|+.|++ .++|.
T Consensus 247 L~~N-~l~~lp~------~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l-~~N~~ 305 (330)
T 1xku_A 247 LNNN-KLVKVPG------GLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSL-FSNPV 305 (330)
T ss_dssp CCSS-CCSSCCT------TTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEEC-CSSSS
T ss_pred CCCC-cCccCCh------hhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEe-ecCcc
Confidence 9888 4554432 3567888999999988 57776632 21 2467888888 77764
No 24
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=1.9e-20 Score=195.31 Aligned_cols=224 Identities=17% Similarity=0.119 Sum_probs=171.3
Q ss_pred CcccEEeecCCcccc--ccchhhcCCCCCcEEEccC-CccccccCcccccCcCCcEeeCCCCCCcccccccCcCCcCCcc
Q 035555 466 IHLKYLNLSSQKKIK--RLPETLCELYNLECLAISF-CTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPVGIRELIRLRR 542 (767)
Q Consensus 466 ~~L~~L~L~~~~~~~--~lp~~~~~l~~L~~L~L~~-~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~ 542 (767)
.+++.|++++|.... .+|..+.++++|++|++++ |.....+|..++.+++|++|++++|.....+|..++.+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 589999999999444 6899999999999999995 6645689999999999999999999444478888888888888
Q ss_pred cceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCc-cCCccccCCC-CccE
Q 035555 543 VRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNV-IPKNWIMSLT-NLRY 620 (767)
Q Consensus 543 L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~l~-~L~~ 620 (767)
|++..+.... .. +..+..+++|+.|++++|... .+|..+..++ +|+.
T Consensus 130 L~Ls~N~l~~---~~----------------------------p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~ 178 (313)
T 1ogq_A 130 LDFSYNALSG---TL----------------------------PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178 (313)
T ss_dssp EECCSSEEES---CC----------------------------CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCE
T ss_pred EeCCCCccCC---cC----------------------------ChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcE
Confidence 8654332221 11 124556677888888888776 7788888887 9999
Q ss_pred EEEeccCCCCCCCC-CCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCccCCcccc
Q 035555 621 LSLSLFKNCEQLLP-LGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKG 699 (767)
Q Consensus 621 L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~ 699 (767)
|++++|.....+|. ++.++ |++|++++|. ++...... +..+++|+.|+|++|. +... .+
T Consensus 179 L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~L~~N~-l~~~-----~~- 238 (313)
T 1ogq_A 179 MTISRNRLTGKIPPTFANLN-LAFVDLSRNM-LEGDASVL-----------FGSDKNTQKIHLAKNS-LAFD-----LG- 238 (313)
T ss_dssp EECCSSEEEEECCGGGGGCC-CSEEECCSSE-EEECCGGG-----------CCTTSCCSEEECCSSE-ECCB-----GG-
T ss_pred EECcCCeeeccCChHHhCCc-ccEEECcCCc-ccCcCCHH-----------HhcCCCCCEEECCCCc-eeee-----cC-
Confidence 99999865544553 66666 9999999987 44333222 3478999999999984 3321 11
Q ss_pred ccccCcccceEeeccCccccCCCcCCCCCCCCcEEEecCCCc
Q 035555 700 EIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGCP 741 (767)
Q Consensus 700 ~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c~ 741 (767)
.+..+++|+.|++++|.....+|..+..+++|+.|++ .+|+
T Consensus 239 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L-s~N~ 279 (313)
T 1ogq_A 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV-SFNN 279 (313)
T ss_dssp GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC-CSSE
T ss_pred cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEEC-cCCc
Confidence 2557899999999999544489999999999999999 7775
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.81 E-value=7.7e-19 Score=194.17 Aligned_cols=253 Identities=19% Similarity=0.186 Sum_probs=157.8
Q ss_pred cCceeeeeccC--CCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEee
Q 035555 443 LIKCRRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLD 520 (767)
Q Consensus 443 ~~~~L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~ 520 (767)
.++.|++|+++ .+..+|. ++++++|++|++++|. +..++. +.++++|++|++++|. +..+|. +..+++|++|+
T Consensus 66 ~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~ 140 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLE 140 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEE
T ss_pred hhcCCCEEECCCCccCCchh-hhccccCCEEECCCCc-cccChh-hcCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEE
Confidence 45566666665 3444444 6666666666666666 555554 6666666666666665 555543 56666666666
Q ss_pred CCCCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEE
Q 035555 521 NDYTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLEL 600 (767)
Q Consensus 521 l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 600 (767)
+++| .+..++ .++.+++|+.|.+.. . ...+..+..+++|+.|++++.. +... ..+..+++|+.|++
T Consensus 141 l~~n-~l~~~~-~~~~l~~L~~L~l~~-~-----~~~~~~~~~l~~L~~L~l~~n~-l~~~-----~~l~~l~~L~~L~l 206 (466)
T 1o6v_A 141 LSSN-TISDIS-ALSGLTSLQQLSFGN-Q-----VTDLKPLANLTTLERLDISSNK-VSDI-----SVLAKLTNLESLIA 206 (466)
T ss_dssp EEEE-EECCCG-GGTTCTTCSEEEEEE-S-----CCCCGGGTTCTTCCEEECCSSC-CCCC-----GGGGGCTTCSEEEC
T ss_pred CCCC-ccCCCh-hhccCCcccEeecCC-c-----ccCchhhccCCCCCEEECcCCc-CCCC-----hhhccCCCCCEEEe
Confidence 6666 344443 355566666665421 1 1122346666667776666532 1221 23566677777777
Q ss_pred EecCCccCCccccCCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCccccee
Q 035555 601 RFDCNVIPKNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLREL 680 (767)
Q Consensus 601 ~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L 680 (767)
++|.....+. +..+++|+.|++++| .++.++.+..+++|++|++++|. ++.++. +..+++|+.|
T Consensus 207 ~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~-------------~~~l~~L~~L 270 (466)
T 1o6v_A 207 TNNQISDITP-LGILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLANNQ-ISNLAP-------------LSGLTKLTEL 270 (466)
T ss_dssp CSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCCCGG-------------GTTCTTCSEE
T ss_pred cCCccccccc-ccccCCCCEEECCCC-CcccchhhhcCCCCCEEECCCCc-cccchh-------------hhcCCCCCEE
Confidence 7776655544 556777777777766 34455666677777777777765 333221 2378889999
Q ss_pred eccCccccccCccCCccccccccCcccceEeeccCccccCCCcCCCCCCCCcEEEecCCCc
Q 035555 681 KFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGCP 741 (767)
Q Consensus 681 ~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c~ 741 (767)
++++| .+..++ .+..+++|+.|++++| .++.++. +..+++|+.|++ .+|.
T Consensus 271 ~l~~n-~l~~~~-------~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L-~~n~ 320 (466)
T 1o6v_A 271 KLGAN-QISNIS-------PLAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTL-YFNN 320 (466)
T ss_dssp ECCSS-CCCCCG-------GGTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEEC-CSSC
T ss_pred ECCCC-ccCccc-------cccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEEC-cCCc
Confidence 99887 344332 1557899999999998 6777765 667899999999 7774
No 26
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=2.7e-19 Score=187.65 Aligned_cols=212 Identities=25% Similarity=0.293 Sum_probs=164.5
Q ss_pred CCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCcccccccCcCCcCCcccc
Q 035555 465 LIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPVGIRELIRLRRVR 544 (767)
Q Consensus 465 l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~ 544 (767)
..++++|+|++|. ++.+|..++++++|++|+|++|. +..+|..++.+++|++|++++| .+..+|..++.+++|+.|+
T Consensus 80 ~~~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCC-chhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEE
Confidence 5789999999999 88999999999999999999998 6699999999999999999998 5668887777777777775
Q ss_pred eeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCCccccCCCCccEEEEe
Q 035555 545 KFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPKNWIMSLTNLRYLSLS 624 (767)
Q Consensus 545 ~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~ 624 (767)
+..+.... .++. .+... ..+..+..+++|+.|+|+
T Consensus 157 L~~n~~~~------------------------~~p~-------------~~~~~--------~~~~~~~~l~~L~~L~L~ 191 (328)
T 4fcg_A 157 IRACPELT------------------------ELPE-------------PLAST--------DASGEHQGLVNLQSLRLE 191 (328)
T ss_dssp EEEETTCC------------------------CCCS-------------CSEEE--------C-CCCEEESTTCCEEEEE
T ss_pred CCCCCCcc------------------------ccCh-------------hHhhc--------cchhhhccCCCCCEEECc
Confidence 54432211 0000 00000 122335569999999999
Q ss_pred ccCCCCCCCC-CCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCccCCcccccccc
Q 035555 625 LFKNCEQLLP-LGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIII 703 (767)
Q Consensus 625 ~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 703 (767)
+|.. +.+|. ++.+++|++|++++|. ++.++.. +..+++|++|+|++|.....++ ..+..
T Consensus 192 ~n~l-~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~------------l~~l~~L~~L~Ls~n~~~~~~p------~~~~~ 251 (328)
T 4fcg_A 192 WTGI-RSLPASIANLQNLKSLKIRNSP-LSALGPA------------IHHLPKLEELDLRGCTALRNYP------PIFGG 251 (328)
T ss_dssp EECC-CCCCGGGGGCTTCCEEEEESSC-CCCCCGG------------GGGCTTCCEEECTTCTTCCBCC------CCTTC
T ss_pred CCCc-CcchHhhcCCCCCCEEEccCCC-CCcCchh------------hccCCCCCEEECcCCcchhhhH------HHhcC
Confidence 9854 46664 8889999999999987 5555443 3488999999999986544333 34678
Q ss_pred CcccceEeeccCccccCCCcCCCCCCCCcEEEecCCCchhHH
Q 035555 704 MPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGCPIFRE 745 (767)
Q Consensus 704 ~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c~~l~~ 745 (767)
+++|+.|+|++|..+..+|..+..+++|+.|+| ++|+.+..
T Consensus 252 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L-~~n~~~~~ 292 (328)
T 4fcg_A 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL-RGCVNLSR 292 (328)
T ss_dssp CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC-TTCTTCCC
T ss_pred CCCCCEEECCCCCchhhcchhhhcCCCCCEEeC-CCCCchhh
Confidence 999999999999999999999999999999999 88876543
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=6.7e-19 Score=194.67 Aligned_cols=254 Identities=23% Similarity=0.222 Sum_probs=190.5
Q ss_pred ccCceeeeeccC--CCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEe
Q 035555 442 KLIKCRRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYL 519 (767)
Q Consensus 442 ~~~~~L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L 519 (767)
..++.|+.|+++ .+..++. ++++++|++|++++|. ++.++. +.++++|++|++++|. +..+| .+..+++|++|
T Consensus 87 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L 161 (466)
T 1o6v_A 87 KNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQL 161 (466)
T ss_dssp TTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEE
T ss_pred hccccCCEEECCCCccccChh-hcCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEe
Confidence 467888888887 4555665 8999999999999998 777776 8899999999999987 66666 48889999999
Q ss_pred eCCCCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceE
Q 035555 520 DNDYTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLE 599 (767)
Q Consensus 520 ~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 599 (767)
++.+ .+..++ .++.+++|+.|++..+... .+..+..+++|+.|.+++..- ... ..+..+++|+.|+
T Consensus 162 ~l~~--~~~~~~-~~~~l~~L~~L~l~~n~l~-----~~~~l~~l~~L~~L~l~~n~l-~~~-----~~~~~l~~L~~L~ 227 (466)
T 1o6v_A 162 SFGN--QVTDLK-PLANLTTLERLDISSNKVS-----DISVLAKLTNLESLIATNNQI-SDI-----TPLGILTNLDELS 227 (466)
T ss_dssp EEEE--SCCCCG-GGTTCTTCCEEECCSSCCC-----CCGGGGGCTTCSEEECCSSCC-CCC-----GGGGGCTTCCEEE
T ss_pred ecCC--cccCch-hhccCCCCCEEECcCCcCC-----CChhhccCCCCCEEEecCCcc-ccc-----ccccccCCCCEEE
Confidence 9864 334443 3778888888876554433 235578888899888887432 211 1256788999999
Q ss_pred EEecCCccCCccccCCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccce
Q 035555 600 LRFDCNVIPKNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRE 679 (767)
Q Consensus 600 l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 679 (767)
+++|....++ .+..+++|+.|++++|. +..++++..+++|++|++++|. ++.++. +..+++|+.
T Consensus 228 l~~n~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~-------------~~~l~~L~~ 291 (466)
T 1o6v_A 228 LNGNQLKDIG-TLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTELKLGANQ-ISNISP-------------LAGLTALTN 291 (466)
T ss_dssp CCSSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSC-CCCCGG-------------GTTCTTCSE
T ss_pred CCCCCcccch-hhhcCCCCCEEECCCCc-cccchhhhcCCCCCEEECCCCc-cCcccc-------------ccCCCccCe
Confidence 9998877665 47788999999999874 4555568889999999999886 444332 237889999
Q ss_pred eeccCccccccCccCCccccccccCcccceEeeccCccccCCCcCCCCCCCCcEEEecCCCc
Q 035555 680 LKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGCP 741 (767)
Q Consensus 680 L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c~ 741 (767)
|++++| .++.+. .+..+++|+.|++++| .+..++. +..+++|+.|++ .+|+
T Consensus 292 L~L~~n-~l~~~~-------~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l-~~n~ 342 (466)
T 1o6v_A 292 LELNEN-QLEDIS-------PISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFF-YNNK 342 (466)
T ss_dssp EECCSS-CCSCCG-------GGGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEEC-CSSC
T ss_pred EEcCCC-cccCch-------hhcCCCCCCEEECcCC-cCCCchh-hccCccCCEeEC-CCCc
Confidence 999988 454432 1558899999999998 5666554 567899999999 7774
No 28
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.80 E-value=5e-19 Score=202.91 Aligned_cols=270 Identities=17% Similarity=0.133 Sum_probs=148.8
Q ss_pred cCceeeeeccC--CCcccccccccCCcccEEeecCCcccccc-chhhcCCCCCcEEEccCCccccccCcc-cccCcCCcE
Q 035555 443 LIKCRRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRL-PETLCELYNLECLAISFCTNLRQLPQG-IGKLRKLMY 518 (767)
Q Consensus 443 ~~~~L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~~ 518 (767)
.++.|+.|+++ .+..+|..++.+++|++|++++|. +..+ |..+.++++|++|++++|.....+|.. +..+++|++
T Consensus 276 ~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 354 (606)
T 3t6q_A 276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354 (606)
T ss_dssp TCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred cccCCCEEeccCCccCCCChhhcccccCCEEECccCC-cCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence 45556666655 344556666666666666666665 4333 445566666666666666533344443 556666666
Q ss_pred eeCCCCCCcccc---cccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCc
Q 035555 519 LDNDYTNSLRYL---PVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNL 595 (767)
Q Consensus 519 L~l~~~~~l~~l---p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L 595 (767)
|++++| .+..+ |..++.+++|+.|.+..+... ......+..+++|+.|.+++..-... .....+..+++|
T Consensus 355 L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~l~~L 427 (606)
T 3t6q_A 355 LDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYNEPL---SLKTEAFKECPQLELLDLAFTRLKVK---DAQSPFQNLHLL 427 (606)
T ss_dssp EECCSS-CCCEEEESTTTTTTCTTCCEEECCSCSCE---EECTTTTTTCTTCSEEECTTCCEECC---TTCCTTTTCTTC
T ss_pred EECCCC-ccccccCcchhcccCCCCCEEECCCCcCC---cCCHHHhcCCccCCeEECCCCcCCCc---ccchhhhCcccC
Confidence 666665 33322 344555556665554433222 12223445555566655554211000 001224556666
Q ss_pred CceEEEecCCcc-CCccccCCCCccEEEEeccCCCCC-C---CCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCcc
Q 035555 596 FDLELRFDCNVI-PKNWIMSLTNLRYLSLSLFKNCEQ-L---LPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSS 670 (767)
Q Consensus 596 ~~L~l~~~~~~~-~p~~~~~l~~L~~L~L~~~~~~~~-l---~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 670 (767)
+.|++++|.... .|.++..+++|++|++++|..... + ..+..+++|++|++++|. ++.++...
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~----------- 495 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHA----------- 495 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTT-----------
T ss_pred CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccChhh-----------
Confidence 666666666543 345556666777777766643321 1 125566677777777665 33332211
Q ss_pred ccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCccccCC-CcCCCCCCCCcEEEecCCCc
Q 035555 671 VIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKAL-PDLLLQKTTLQKLHIWGGCP 741 (767)
Q Consensus 671 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-p~~~~~l~sL~~L~l~~~c~ 741 (767)
+..+++|+.|+|++|. +... .+..+..+++| .|++++| .++.+ |..+..+++|+.|++ .+||
T Consensus 496 ~~~l~~L~~L~Ls~N~-l~~~-----~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l-~~N~ 558 (606)
T 3t6q_A 496 FTSLKMMNHVDLSHNR-LTSS-----SIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINL-RQNP 558 (606)
T ss_dssp TTTCTTCCEEECCSSC-CCGG-----GGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEEC-TTCC
T ss_pred hccccCCCEEECCCCc-cCcC-----ChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeC-CCCC
Confidence 2367788888888773 3322 33356677888 8888888 44444 455666788888888 6554
No 29
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.80 E-value=2.6e-19 Score=205.26 Aligned_cols=272 Identities=17% Similarity=0.113 Sum_probs=206.5
Q ss_pred eeeeeccC--CCcccc-cccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCC
Q 035555 446 CRRWRCDN--YIKEIP-TNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDND 522 (767)
Q Consensus 446 ~L~~l~l~--~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~ 522 (767)
.|+.++++ .+..++ ..|+++++|++|++++|. ++.+|..+.++++|++|++++|......|..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 67888887 455665 459999999999999998 88999999999999999999998444446689999999999999
Q ss_pred CCCCccccccc-CcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEE
Q 035555 523 YTNSLRYLPVG-IRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELR 601 (767)
Q Consensus 523 ~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 601 (767)
+|.....+|.. ++.+++|+.|++..+..... ......+..+++|+.|.+++.. ........+..+++|+.|+++
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETS-DCCNLQLRNLSHLQSLNLSYNE----PLSLKTEAFKECPQLELLDLA 408 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEE-EESTTTTTTCTTCCEEECCSCS----CEEECTTTTTTCTTCSEEECT
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccc-cCcchhcccCCCCCEEECCCCc----CCcCCHHHhcCCccCCeEECC
Confidence 99555566654 78899999987765544321 0113467788899999988742 222234567788999999999
Q ss_pred ecCCcc--CCccccCCCCccEEEEeccCCCCCCCC-CCCCCCCCeeeecCCCCceE-ecccccCCCCCCCCccccCCccc
Q 035555 602 FDCNVI--PKNWIMSLTNLRYLSLSLFKNCEQLLP-LGKLQSLEYLQIGGMHGVKR-VGNEFLGVESDTNGSSVIAFPKL 677 (767)
Q Consensus 602 ~~~~~~--~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L 677 (767)
+|.... .+.++..+++|+.|++++|......|. ++.+++|++|++++|.-... ++. ...+..+++|
T Consensus 409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----------~~~~~~l~~L 478 (606)
T 3t6q_A 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK----------TNSLQTLGRL 478 (606)
T ss_dssp TCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECS----------SCGGGGCTTC
T ss_pred CCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccccc----------chhhccCCCc
Confidence 998753 345578999999999999865444443 78899999999999873210 111 0114589999
Q ss_pred ceeeccCccccccCccCCccccccccCcccceEeeccCccccCCCcCCCCCCCCcEEEecCCCc
Q 035555 678 RELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGCP 741 (767)
Q Consensus 678 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c~ 741 (767)
+.|++++| .+..+ .+..+..+++|+.|++++|......|..+..+++| .|++ .+|.
T Consensus 479 ~~L~Ls~n-~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L-~~N~ 534 (606)
T 3t6q_A 479 EILVLSFC-DLSSI-----DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNL-ASNH 534 (606)
T ss_dssp CEEECTTS-CCCEE-----CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEEC-CSSC
T ss_pred cEEECCCC-ccCcc-----ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEEC-cCCc
Confidence 99999998 44433 33357789999999999995445667888999999 9999 7664
No 30
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=5.6e-19 Score=186.13 Aligned_cols=241 Identities=17% Similarity=0.121 Sum_probs=111.1
Q ss_pred eeeeccC--CCcccccccccCCcccEEeecCCccccccc-hhhcCCCCCcEEEccCCcccccc-CcccccCcCCcEeeCC
Q 035555 447 RRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLP-ETLCELYNLECLAISFCTNLRQL-PQGIGKLRKLMYLDND 522 (767)
Q Consensus 447 L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L~~L~l~ 522 (767)
++.++++ .+..+|..+. ++|++|++++|. ++.++ ..+.++++|++|++++|. +..+ |..+..+++|++|+++
T Consensus 35 l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEIS--PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECC
T ss_pred CCEEECCCCCccccCCCCC--CCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECC
Confidence 4444444 3444554442 455666666555 44442 345556666666666555 3332 4455555666666665
Q ss_pred CCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEe
Q 035555 523 YTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRF 602 (767)
Q Consensus 523 ~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 602 (767)
+| .+..+|..+. ++|++|.+..+... ......+..+++|+.|.+.+..- .. .......+..+ +|+.|++++
T Consensus 111 ~n-~l~~l~~~~~--~~L~~L~l~~n~i~---~~~~~~~~~l~~L~~L~l~~n~l-~~-~~~~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 111 KN-HLVEIPPNLP--SSLVELRIHDNRIR---KVPKGVFSGLRNMNCIEMGGNPL-EN-SGFEPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp SS-CCCSCCSSCC--TTCCEEECCSSCCC---CCCSGGGSSCSSCCEEECCSCCC-BG-GGSCTTSSCSC-CCSCCBCCS
T ss_pred CC-cCCccCcccc--ccCCEEECCCCccC---ccCHhHhCCCccCCEEECCCCcc-cc-CCCCcccccCC-ccCEEECcC
Confidence 55 4445554443 44555544333222 11222344555555555544211 00 00111223333 555555555
Q ss_pred cCCccCCccccCCCCccEEEEeccCCCCCCC-CCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceee
Q 035555 603 DCNVIPKNWIMSLTNLRYLSLSLFKNCEQLL-PLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELK 681 (767)
Q Consensus 603 ~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 681 (767)
|....+|..+. ++|+.|++++|......+ .+..+++|++|++++|. ++.++... +..+++|+.|+
T Consensus 182 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~-----------~~~l~~L~~L~ 247 (332)
T 2ft3_A 182 AKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGS-----------LSFLPTLRELH 247 (332)
T ss_dssp SBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTG-----------GGGCTTCCEEE
T ss_pred CCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCChhH-----------hhCCCCCCEEE
Confidence 55555554332 455555555553222221 24555556666655554 33222211 12455555555
Q ss_pred ccCccccccCccCCccccccccCcccceEeeccCccccCCC
Q 035555 682 FSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALP 722 (767)
Q Consensus 682 L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp 722 (767)
+++| .++.++. .+..+++|+.|++++| .++.+|
T Consensus 248 L~~N-~l~~lp~------~l~~l~~L~~L~l~~N-~l~~~~ 280 (332)
T 2ft3_A 248 LDNN-KLSRVPA------GLPDLKLLQVVYLHTN-NITKVG 280 (332)
T ss_dssp CCSS-CCCBCCT------TGGGCTTCCEEECCSS-CCCBCC
T ss_pred CCCC-cCeecCh------hhhcCccCCEEECCCC-CCCccC
Confidence 5555 3333221 2345555555555555 344443
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.79 E-value=1.6e-18 Score=196.62 Aligned_cols=141 Identities=19% Similarity=0.161 Sum_probs=94.2
Q ss_pred cCCCCcCceEEEecCCcc-CCccccCCCCccEEEEeccCCCCCCC----CCCCCCCCCeeeecCCCCceE-ecccccCC-
Q 035555 590 EKKKNLFDLELRFDCNVI-PKNWIMSLTNLRYLSLSLFKNCEQLL----PLGKLQSLEYLQIGGMHGVKR-VGNEFLGV- 662 (767)
Q Consensus 590 ~~~~~L~~L~l~~~~~~~-~p~~~~~l~~L~~L~L~~~~~~~~l~----~l~~l~~L~~L~L~~~~~l~~-~~~~~~~~- 662 (767)
..+++|+.|++++|.... .|.++..+++|+.|++++|. ++.++ .++.+++|++|++++|. ++. ++...+..
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~l 427 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWA 427 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCCC
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcCc
Confidence 567888999999888765 67778888999999999874 44443 26788999999998887 333 44332210
Q ss_pred CCCC------C---CccccCC-cccceeeccCccccccCccCCccccccccCcccceEeeccCccccCCCcC-CCCCCCC
Q 035555 663 ESDT------N---GSSVIAF-PKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDL-LLQKTTL 731 (767)
Q Consensus 663 ~~~~------~---~~~~~~~-~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-~~~l~sL 731 (767)
.... + ......+ ++|+.|+|++| .++.++. .+..+++|+.|++++| .++.+|.. +..+++|
T Consensus 428 ~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~------~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L 499 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPK------DVTHLQALQELNVASN-QLKSVPDGVFDRLTSL 499 (562)
T ss_dssp TTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCT------TTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTC
T ss_pred ccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccCh------hhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCC
Confidence 0000 0 0001223 46777777776 4554433 2347888999999888 67788876 7788899
Q ss_pred cEEEecCCCc
Q 035555 732 QKLHIWGGCP 741 (767)
Q Consensus 732 ~~L~l~~~c~ 741 (767)
+.|++ .++|
T Consensus 500 ~~L~l-~~N~ 508 (562)
T 3a79_B 500 QYIWL-HDNP 508 (562)
T ss_dssp CCEEC-CSCC
T ss_pred CEEEe-cCCC
Confidence 99998 5544
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=196.36 Aligned_cols=142 Identities=20% Similarity=0.194 Sum_probs=92.2
Q ss_pred cCCCCcCceEEEecCCcc-CCccccCCCCccEEEEeccCCCC--CCC-CCCCCCCCCeeeecCCCCceE-ecccccC-CC
Q 035555 590 EKKKNLFDLELRFDCNVI-PKNWIMSLTNLRYLSLSLFKNCE--QLL-PLGKLQSLEYLQIGGMHGVKR-VGNEFLG-VE 663 (767)
Q Consensus 590 ~~~~~L~~L~l~~~~~~~-~p~~~~~l~~L~~L~L~~~~~~~--~l~-~l~~l~~L~~L~L~~~~~l~~-~~~~~~~-~~ 663 (767)
..+++|+.|++++|.... .|.++..+++|+.|++++|.... .+| .++.+++|++|++++|. ++. ++...+. ..
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccccchhccCc
Confidence 567888888888888764 67778888888888888874332 222 26778888888888877 333 4433111 00
Q ss_pred CCC------C---CccccCC-cccceeeccCccccccCccCCccccccccCcccceEeeccCccccCCCcC-CCCCCCCc
Q 035555 664 SDT------N---GSSVIAF-PKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDL-LLQKTTLQ 732 (767)
Q Consensus 664 ~~~------~---~~~~~~~-~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-~~~l~sL~ 732 (767)
... + ......+ ++|+.|++++| .++.++. .+..+++|+.|++++| .++.+|.. +..+++|+
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~------~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPK------QVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQ 471 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCG------GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred cCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccch------hhhcCCCCCEEECCCC-cCCccCHHHhccCCccc
Confidence 000 0 0001122 46777777666 3443332 3457889999999998 67788876 77888999
Q ss_pred EEEecCCCc
Q 035555 733 KLHIWGGCP 741 (767)
Q Consensus 733 ~L~l~~~c~ 741 (767)
.|++ .+||
T Consensus 472 ~L~l-~~N~ 479 (520)
T 2z7x_B 472 KIWL-HTNP 479 (520)
T ss_dssp EEEC-CSSC
T ss_pred EEEC-cCCC
Confidence 9999 6554
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.79 E-value=5.5e-19 Score=193.83 Aligned_cols=246 Identities=18% Similarity=0.173 Sum_probs=143.5
Q ss_pred cccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCcccccccCcCCcCCc
Q 035555 462 IEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPVGIRELIRLR 541 (767)
Q Consensus 462 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~ 541 (767)
++++++|++|++++|. ++.+| ++++++|++|++++|. +..+| ++.+++|++|++++|..+..+ .++.+++|+
T Consensus 102 ~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 4444444444444444 33333 4444444444444444 33332 444444555555444333333 244455555
Q ss_pred ccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCCccccCCCCccEE
Q 035555 542 RVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPKNWIMSLTNLRYL 621 (767)
Q Consensus 542 ~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L 621 (767)
.|++..+.... +. +..+++|+.|.+++.. +... .+..+++|+.|++++|....+| +..+++|+.|
T Consensus 174 ~L~ls~n~l~~-----l~-l~~l~~L~~L~l~~N~-l~~~------~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L 238 (457)
T 3bz5_A 174 TLDCSFNKITE-----LD-VSQNKLLNRLNCDTNN-ITKL------DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYF 238 (457)
T ss_dssp EEECCSSCCCC-----CC-CTTCTTCCEEECCSSC-CSCC------CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEE
T ss_pred EEECCCCccce-----ec-cccCCCCCEEECcCCc-CCee------ccccCCCCCEEECcCCcccccC--ccccCCCCEE
Confidence 55443333222 11 4556666666666532 1111 4778899999999999998887 7889999999
Q ss_pred EEeccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCccCC--cccc
Q 035555 622 SLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGT--ATKG 699 (767)
Q Consensus 622 ~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~--~~~~ 699 (767)
++++|. ++.+| ++.+++|+.|+++++. ++.+.-....... ......+++|+.|++++|..+..++... ...-
T Consensus 239 ~l~~N~-l~~~~-~~~l~~L~~L~l~~n~-L~~L~l~~n~~~~---~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L 312 (457)
T 3bz5_A 239 DCSVNP-LTELD-VSTLSKLTTLHCIQTD-LLEIDLTHNTQLI---YFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL 312 (457)
T ss_dssp ECCSSC-CSCCC-CTTCTTCCEEECTTCC-CSCCCCTTCTTCC---EEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCC
T ss_pred EeeCCc-CCCcC-HHHCCCCCEEeccCCC-CCEEECCCCccCC---cccccccccCCEEECCCCcccceeccCCCcceEe
Confidence 999885 44444 4667777666665543 3333211100000 0012478999999999997665554311 1111
Q ss_pred ccccCcccceEeeccCccccCCCcCCCCCCCCcEEEecCCC
Q 035555 700 EIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGC 740 (767)
Q Consensus 700 ~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c 740 (767)
.+..+++|+.|++++| .++.++ +..+++|+.|++ +++
T Consensus 313 ~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l-~~N 349 (457)
T 3bz5_A 313 DLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSC-VNA 349 (457)
T ss_dssp CCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEEC-CSS
T ss_pred chhhcccCCEEECCCC-cccccc--cccCCcCcEEEC-CCC
Confidence 2457789999999998 677775 778999999999 554
No 34
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=2e-18 Score=181.91 Aligned_cols=269 Identities=16% Similarity=0.114 Sum_probs=195.7
Q ss_pred CceeeeeccC--CCcccc-cccccCCcccEEeecCCcccccc-chhhcCCCCCcEEEccCCccccccCcccccCcCCcEe
Q 035555 444 IKCRRWRCDN--YIKEIP-TNIEKLIHLKYLNLSSQKKIKRL-PETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYL 519 (767)
Q Consensus 444 ~~~L~~l~l~--~~~~lp-~~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L 519 (767)
.+.|+.|+++ .+..++ ..|+++++|++|++++|. ++.+ |..+.++++|++|++++|. +..+|..+. ++|++|
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L 128 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVEL 128 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCCEE
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCCc-CCccCcccc--ccCCEE
Confidence 4578888887 456664 579999999999999999 6665 7889999999999999998 778888765 899999
Q ss_pred eCCCCCCccccccc-CcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCce
Q 035555 520 DNDYTNSLRYLPVG-IRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDL 598 (767)
Q Consensus 520 ~l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L 598 (767)
++++| .+..+|.. +..+++|+.|.+..+.... .+.....+..+ +|+.|.+++.. +... +.. ..++|+.|
T Consensus 129 ~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~l-~L~~L~l~~n~-l~~l----~~~--~~~~L~~L 198 (332)
T 2ft3_A 129 RIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLEN-SGFEPGAFDGL-KLNYLRISEAK-LTGI----PKD--LPETLNEL 198 (332)
T ss_dssp ECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBG-GGSCTTSSCSC-CCSCCBCCSSB-CSSC----CSS--SCSSCSCC
T ss_pred ECCCC-ccCccCHhHhCCCccCCEEECCCCcccc-CCCCcccccCC-ccCEEECcCCC-CCcc----Ccc--ccCCCCEE
Confidence 99998 66777654 7889999999876554431 01223344555 67777776632 1111 111 12689999
Q ss_pred EEEecCCccCC-ccccCCCCccEEEEeccCCCCCCC-CCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcc
Q 035555 599 ELRFDCNVIPK-NWIMSLTNLRYLSLSLFKNCEQLL-PLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPK 676 (767)
Q Consensus 599 ~l~~~~~~~~p-~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 676 (767)
++++|.....+ ..+..+++|+.|+|++|......+ .++.+++|++|++++|. ++.++..+ ..+++
T Consensus 199 ~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l------------~~l~~ 265 (332)
T 2ft3_A 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGL------------PDLKL 265 (332)
T ss_dssp BCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTG------------GGCTT
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhh------------hcCcc
Confidence 99999887655 678899999999999885443333 37889999999999987 66665543 37899
Q ss_pred cceeeccCccccccCccCCccccc-cccCcccceEeeccCccc--cCCCcCCCCCCCCcEEEecCCCc
Q 035555 677 LRELKFSYMEELEEWDFGTATKGE-IIIMPRLSCLIIFGCFKL--KALPDLLLQKTTLQKLHIWGGCP 741 (767)
Q Consensus 677 L~~L~L~~~~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l--~~lp~~~~~l~sL~~L~l~~~c~ 741 (767)
|+.|++++| .++.++........ ...+++|+.|++++|+.. ...|..+..+++|+.|++ .+|.
T Consensus 266 L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l-~~n~ 331 (332)
T 2ft3_A 266 LQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF-GNYK 331 (332)
T ss_dssp CCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-----
T ss_pred CCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhc-cccc
Confidence 999999998 56665432111110 112688999999999754 345677888999999999 7663
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.78 E-value=4.2e-18 Score=192.81 Aligned_cols=164 Identities=20% Similarity=0.200 Sum_probs=94.9
Q ss_pred cCCCCcCceEEEecCCccCC---ccccCCCCccEEEEeccCCCCCCCC-CCCCCCCCeeeecCCCCceEecccccCC-C-
Q 035555 590 EKKKNLFDLELRFDCNVIPK---NWIMSLTNLRYLSLSLFKNCEQLLP-LGKLQSLEYLQIGGMHGVKRVGNEFLGV-E- 663 (767)
Q Consensus 590 ~~~~~L~~L~l~~~~~~~~p---~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~-~- 663 (767)
..+++|+.|++++|....+| ..+..+++|+.|++++|. ++.+|. ++.+++|++|++++|. ++.++...... .
T Consensus 358 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~ 435 (549)
T 2z81_A 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEV 435 (549)
T ss_dssp TSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSE
T ss_pred hccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-CccCChhhcccccccEEECCCCC-cccccchhcCCceE
Confidence 34455555555555544333 234566677777777663 334443 5567777777777765 44333221100 0
Q ss_pred ----CCCCCccccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCccccCCC-cCCCCCCCCcEEEecC
Q 035555 664 ----SDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALP-DLLLQKTTLQKLHIWG 738 (767)
Q Consensus 664 ----~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~sL~~L~l~~ 738 (767)
..........+++|++|+|++| .++.++. ...+++|+.|++++| .++.+| ..+..+++|+.|++ .
T Consensus 436 L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~-------~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l-~ 505 (549)
T 2z81_A 436 LDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD-------ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWL-H 505 (549)
T ss_dssp EECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC-------GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEEC-C
T ss_pred EECCCCChhhhcccCChhcEEECCCC-ccCcCCC-------cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEe-c
Confidence 0000111236788888888887 5554432 246899999999998 566655 55788999999999 6
Q ss_pred CCc------hhH-------HhhcccCCCCCCcccccCcce
Q 035555 739 GCP------IFR-------ERYREETGEDWPKIRHIPNIE 765 (767)
Q Consensus 739 ~c~------~l~-------~~~~~~~~~~~~~i~hip~i~ 765 (767)
+|| .+. .......+..+....|.|-.+
T Consensus 506 ~N~~~~~~~~~~~l~~~l~~~~~~~~~~~~C~~~~~~~~~ 545 (549)
T 2z81_A 506 TNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVRS 545 (549)
T ss_dssp SSCBCCCHHHHHHHHHHHHHCTTTEESCCBBTTTCCBGGG
T ss_pred CCCccCCCccHHHHHHHHHhcccccCCCCeECCCCcchhh
Confidence 554 211 122234456666777766544
No 36
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.78 E-value=5.5e-19 Score=200.08 Aligned_cols=125 Identities=22% Similarity=0.165 Sum_probs=68.7
Q ss_pred ceeeeeccC--CCccc-ccccccCCcccEEeecCCccccccc-hhhcCCCCCcEEEccCCccccccCcc-cccCcCCcEe
Q 035555 445 KCRRWRCDN--YIKEI-PTNIEKLIHLKYLNLSSQKKIKRLP-ETLCELYNLECLAISFCTNLRQLPQG-IGKLRKLMYL 519 (767)
Q Consensus 445 ~~L~~l~l~--~~~~l-p~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~~L 519 (767)
+.|++|+++ .+..+ |..|+++++|++|++++|. ++.++ ..++++++|++|++++|. +..+|.. ++.+++|++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEE
Confidence 456666665 23333 3556666677777777666 44433 556666677777777666 4444443 6666667777
Q ss_pred eCCCCCCcc--cccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeC
Q 035555 520 DNDYTNSLR--YLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHG 574 (767)
Q Consensus 520 ~l~~~~~l~--~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~ 574 (767)
++++| .+. ..|..++.+++|+.|++..+.... ......+..+++|+.|.+.+
T Consensus 104 ~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 104 NLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFS--EIRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp ECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCC--EECTTTTTTCCEEEEEEEEE
T ss_pred ECCCC-cccccchhhhhhccCCccEEECCCCcccc--ccCHhhhhcccccCeeeccC
Confidence 76666 333 234456666666666655443111 11112344455555555543
No 37
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=2.7e-19 Score=190.24 Aligned_cols=264 Identities=19% Similarity=0.190 Sum_probs=166.3
Q ss_pred CCcccccccccCCcccEEeecCCccccccch-hhcCCCCCcEEEccCCcccccc-CcccccCcCCcEeeCCCCCCccccc
Q 035555 454 YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPE-TLCELYNLECLAISFCTNLRQL-PQGIGKLRKLMYLDNDYTNSLRYLP 531 (767)
Q Consensus 454 ~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp 531 (767)
.++.+|..+. ++|++|++++|. ++.+|. .+.++++|++|++++|. +..+ |..+..+++|++|++++| .+..+|
T Consensus 42 ~l~~iP~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~ 116 (353)
T 2z80_A 42 SLNSIPSGLT--EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYN-YLSNLS 116 (353)
T ss_dssp TCSSCCTTCC--TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSSCC
T ss_pred Cccccccccc--ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCC-cCCcCC
Confidence 4556666554 367777777777 655554 56777777777777776 4444 345667777777777776 555565
Q ss_pred cc-CcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccC-C
Q 035555 532 VG-IRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIP-K 609 (767)
Q Consensus 532 ~~-~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p 609 (767)
.. ++.+++|++|++..+..... .....+..+++|+.|.+++...+.. .....+.++++|+.|++++|..... |
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l~~l--~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGNPYKTL--GETSLFSHLTKLQILRVGNMDTFTK---IQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp HHHHTTCTTCSEEECTTCCCSSS--CSSCSCTTCTTCCEEEEEESSSCCE---ECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred HhHhCCCccCCEEECCCCCCccc--CchhhhccCCCCcEEECCCCccccc---cCHHHccCCCCCCEEECCCCCcCccCH
Confidence 44 56666777665544433320 0112355666777777765432221 1123566788899999999887644 7
Q ss_pred ccccCCCCccEEEEeccCCCCCCCC--CCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccc
Q 035555 610 NWIMSLTNLRYLSLSLFKNCEQLLP--LGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEE 687 (767)
Q Consensus 610 ~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 687 (767)
..+..+++|++|++++|. ++.++. +..+++|++|++++|. ++.++...... ....+.++.+++.++ .
T Consensus 192 ~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~--------~~~~~~l~~l~L~~~-~ 260 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTD-LDTFHFSELST--------GETNSLIKKFTFRNV-K 260 (353)
T ss_dssp TTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCB-CTTCCCC--------------CCCCCCEEEEESC-B
T ss_pred HHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCc-ccccccccccc--------ccccchhhccccccc-c
Confidence 778889999999999875 344443 3458899999999886 33332211111 124566777777765 2
Q ss_pred cccCccCCccccccccCcccceEeeccCccccCCCcCC-CCCCCCcEEEecCCCc
Q 035555 688 LEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLL-LQKTTLQKLHIWGGCP 741 (767)
Q Consensus 688 l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~-~~l~sL~~L~l~~~c~ 741 (767)
+...... ..+..+..+++|+.|++++| .++.+|..+ ..+++|+.|++ .+||
T Consensus 261 l~~~~l~-~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L-~~N~ 312 (353)
T 2z80_A 261 ITDESLF-QVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWL-HTNP 312 (353)
T ss_dssp CCHHHHH-HHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC-CSSC
T ss_pred ccCcchh-hhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEe-eCCC
Confidence 3221111 01223567899999999998 788999774 78999999999 6554
No 38
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.77 E-value=5.3e-19 Score=202.71 Aligned_cols=265 Identities=15% Similarity=0.131 Sum_probs=198.2
Q ss_pred ccCceeeeeccC--CCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEe
Q 035555 442 KLIKCRRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYL 519 (767)
Q Consensus 442 ~~~~~L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L 519 (767)
..++.|+.+++. .+..+| .+..+++|++|++++|. ++.+|. + .+++|++|++++|..+..+ .+..+++|++|
T Consensus 282 ~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~-l~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 355 (606)
T 3vq2_A 282 HCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQ-LKQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYL 355 (606)
T ss_dssp GGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCC-CSSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEE
T ss_pred ccCCCCCEEEecCccchhhh-hccccccCCEEEccccc-Cccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEE
Confidence 356677777776 456677 78888999999999998 688884 5 8899999999998655544 46688999999
Q ss_pred eCCCCCCcccc---cccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHH-hhccCCCCc
Q 035555 520 DNDYTNSLRYL---PVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARR-AELEKKKNL 595 (767)
Q Consensus 520 ~l~~~~~l~~l---p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~-~~l~~~~~L 595 (767)
++++| .+... |..+..+++|+.|++..+.... ....+..+++|+.|.+.+..- ..... ..+.++++|
T Consensus 356 ~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 356 DLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAII----MSANFMGLEELQHLDFQHSTL----KRVTEFSAFLSLEKL 426 (606)
T ss_dssp ECCSS-CEEEEEECCHHHHCCSCCCEEECCSCSEEE----ECCCCTTCTTCCEEECTTSEE----ESTTTTTTTTTCTTC
T ss_pred ECcCC-ccCCCcchhhhhccCCcccEeECCCCcccc----chhhccCCCCCCeeECCCCcc----CCccChhhhhccccC
Confidence 99988 45444 6677888888888776554432 124566778888888776321 11111 356788999
Q ss_pred CceEEEecCCcc-CCccccCCCCccEEEEeccCCCCC-CC-CCCCCCCCCeeeecCCCCceEecccccCCCCCCCCcccc
Q 035555 596 FDLELRFDCNVI-PKNWIMSLTNLRYLSLSLFKNCEQ-LL-PLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVI 672 (767)
Q Consensus 596 ~~L~l~~~~~~~-~p~~~~~l~~L~~L~L~~~~~~~~-l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 672 (767)
+.|++++|.... .|..+..+++|+.|++++|..... +| .++.+++|++|++++|. ++.++... +.
T Consensus 427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-----------~~ 494 (606)
T 3vq2_A 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGV-----------FD 494 (606)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTT-----------TT
T ss_pred CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc-CCccChhh-----------hc
Confidence 999999998764 677788999999999998865542 44 37889999999999987 55444322 24
Q ss_pred CCcccceeeccCccccccCccCCccccccccCcccceEeeccCccccCCCcCCCCCC-CCcEEEecCCCc
Q 035555 673 AFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLLLQKT-TLQKLHIWGGCP 741 (767)
Q Consensus 673 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~-sL~~L~l~~~c~ 741 (767)
.+++|+.|+|++| .+... .+..+..+++|+.|+|++| .++.+|..+..++ +|+.|++ .+||
T Consensus 495 ~l~~L~~L~Ls~N-~l~~~-----~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l-~~N~ 556 (606)
T 3vq2_A 495 TLHRLQLLNMSHN-NLLFL-----DSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNL-TNNS 556 (606)
T ss_dssp TCTTCCEEECCSS-CCSCE-----EGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEEC-CSCC
T ss_pred ccccCCEEECCCC-cCCCc-----CHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEc-cCCC
Confidence 7899999999998 44433 3345778999999999999 6889998888886 6999999 6655
No 39
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=197.14 Aligned_cols=81 Identities=17% Similarity=0.134 Sum_probs=52.0
Q ss_pred cCceeeeeccC--CCcccc-cccccCCcccEEeecCCccccccch-hhcCCCCCcEEEccCCcccc-ccCcccccCcCCc
Q 035555 443 LIKCRRWRCDN--YIKEIP-TNIEKLIHLKYLNLSSQKKIKRLPE-TLCELYNLECLAISFCTNLR-QLPQGIGKLRKLM 517 (767)
Q Consensus 443 ~~~~L~~l~l~--~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~l~-~lp~~~~~l~~L~ 517 (767)
.++.|++|+++ .+..+| ..|+++++|++|++++|. ++.+|. .++++++|++|++++|.... .+|..++++++|+
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~ 152 (570)
T 2z63_A 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152 (570)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred CchhCCEEeCcCCcCCccCHhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCC
Confidence 45666666665 234443 456667777777777766 555553 46677777777777776222 3567777777777
Q ss_pred EeeCCCC
Q 035555 518 YLDNDYT 524 (767)
Q Consensus 518 ~L~l~~~ 524 (767)
+|++++|
T Consensus 153 ~L~l~~n 159 (570)
T 2z63_A 153 HLDLSSN 159 (570)
T ss_dssp EEECTTS
T ss_pred EEeCcCC
Confidence 7777776
No 40
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=7.8e-18 Score=185.30 Aligned_cols=231 Identities=23% Similarity=0.276 Sum_probs=162.8
Q ss_pred CCcccccccccCCcccEEeecCCcccccc-chhhcCCCCCcEEEccCCcccccc-CcccccCcCCcEeeCCCCCCccccc
Q 035555 454 YIKEIPTNIEKLIHLKYLNLSSQKKIKRL-PETLCELYNLECLAISFCTNLRQL-PQGIGKLRKLMYLDNDYTNSLRYLP 531 (767)
Q Consensus 454 ~~~~lp~~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp 531 (767)
.+..+|..+. ++|++|+|++|. ++.+ |..+.++++|++|+|++|. +..+ |..+..+++|++|++++| .+..+|
T Consensus 65 ~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~ 139 (452)
T 3zyi_A 65 GLSEVPQGIP--SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDN-WLTVIP 139 (452)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSBCC
T ss_pred CcCccCCCCC--CCccEEECcCCc-CceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCC-cCCccC
Confidence 5667887665 689999999998 6655 5778999999999999998 5544 467888999999999998 666776
Q ss_pred cc-CcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCC-cc-C
Q 035555 532 VG-IRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCN-VI-P 608 (767)
Q Consensus 532 ~~-~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~-~ 608 (767)
.. ++.+++|+.|++..+.... .... .+.++++|+.|+++.|.. .. .
T Consensus 140 ~~~~~~l~~L~~L~L~~N~l~~---~~~~----------------------------~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 140 SGAFEYLSKLRELWLRNNPIES---IPSY----------------------------AFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp TTTSSSCTTCCEEECCSCCCCE---ECTT----------------------------TTTTCTTCCEEECCCCTTCCEEC
T ss_pred hhhhcccCCCCEEECCCCCcce---eCHh----------------------------HHhcCCcccEEeCCCCCCccccC
Confidence 54 7778888887654433321 1111 233444555555554322 22 2
Q ss_pred CccccCCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCcccc
Q 035555 609 KNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEEL 688 (767)
Q Consensus 609 p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 688 (767)
+..+..+++|++|+|++| .+..+|.+..+++|++|+|++|. ++.++... +..+++|+.|+|++| .+
T Consensus 189 ~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~L~~n-~l 254 (452)
T 3zyi_A 189 EGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNH-FPEIRPGS-----------FHGLSSLKKLWVMNS-QV 254 (452)
T ss_dssp TTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSC-CSEECGGG-----------GTTCTTCCEEECTTS-CC
T ss_pred hhhccCCCCCCEEECCCC-cccccccccccccccEEECcCCc-CcccCccc-----------ccCccCCCEEEeCCC-cC
Confidence 334667888999999887 55667888889999999999887 55543322 237889999999887 34
Q ss_pred ccCccCCccccccccCcccceEeeccCccccCCC-cCCCCCCCCcEEEecCCCc
Q 035555 689 EEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALP-DLLLQKTTLQKLHIWGGCP 741 (767)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~sL~~L~l~~~c~ 741 (767)
..+ .+..+..+++|+.|+|++| .++.+| ..+..+++|+.|++ .++|
T Consensus 255 ~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L-~~Np 301 (452)
T 3zyi_A 255 SLI-----ERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHL-HHNP 301 (452)
T ss_dssp CEE-----CTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEEC-CSSC
T ss_pred ceE-----CHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEc-cCCC
Confidence 433 2335667899999999998 677776 44677889999999 6554
No 41
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.77 E-value=4.1e-18 Score=188.04 Aligned_cols=281 Identities=15% Similarity=0.082 Sum_probs=194.2
Q ss_pred ccccccCceeeeeccC--CCccc-ccccccCCcccEEeecCCcccccc-chhhcCCCCCcEEEccCCccccccCcccccC
Q 035555 438 EEALKLIKCRRWRCDN--YIKEI-PTNIEKLIHLKYLNLSSQKKIKRL-PETLCELYNLECLAISFCTNLRQLPQGIGKL 513 (767)
Q Consensus 438 ~~~~~~~~~L~~l~l~--~~~~l-p~~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l 513 (767)
..++...+.|++|+++ .+..+ |..|+++++|++|++++|.....+ |..+.++++|++|++++|......|..++.+
T Consensus 23 ~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 102 (455)
T 3v47_A 23 HQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL 102 (455)
T ss_dssp SSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTC
T ss_pred ccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCc
Confidence 3344444678999988 45555 678999999999999999844455 4679999999999999999445557889999
Q ss_pred cCCcEeeCCCCCCccccccc--CcCCcCCcccceeEecCccCCCCChhh-hhcCCCCCCeeeeCCCCCCChhhh------
Q 035555 514 RKLMYLDNDYTNSLRYLPVG--IRELIRLRRVRKFVVGGGYDRACSLES-LKRLILLRECRIHGLGDVSDVGEA------ 584 (767)
Q Consensus 514 ~~L~~L~l~~~~~l~~lp~~--~~~l~~L~~L~~~~~~~~~~~~~~~~~-l~~l~~L~~L~i~~l~~~~~~~~~------ 584 (767)
++|++|++++|......|.. ++.+++|+.|++..+.... ..... +..+++|+.|++++..-.......
T Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 179 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK---IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179 (455)
T ss_dssp TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS---CCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTT
T ss_pred ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc---cCcccccCCCCcccEEeCCCCcccccChhhhhcccc
Confidence 99999999999433334444 8889999998776655543 22222 778889999888764211110000
Q ss_pred ------------------------HHhhccCCCCcCceEEEecCCcc-CCcccc--------------------------
Q 035555 585 ------------------------RRAELEKKKNLFDLELRFDCNVI-PKNWIM-------------------------- 613 (767)
Q Consensus 585 ------------------------~~~~l~~~~~L~~L~l~~~~~~~-~p~~~~-------------------------- 613 (767)
....+..+++|+.|++++|.... .|.++.
T Consensus 180 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 259 (455)
T 3v47_A 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259 (455)
T ss_dssp CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchh
Confidence 01112344677888887776521 111111
Q ss_pred -------------CCCCccEEEEeccCCCCCCCC-CCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccce
Q 035555 614 -------------SLTNLRYLSLSLFKNCEQLLP-LGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRE 679 (767)
Q Consensus 614 -------------~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 679 (767)
..++|+.|++++|......|. ++.+++|++|++++|. ++.++... +..+++|++
T Consensus 260 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-----------~~~l~~L~~ 327 (455)
T 3v47_A 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNA-----------FWGLTHLLK 327 (455)
T ss_dssp SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTT-----------TTTCTTCCE
T ss_pred hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChhH-----------hcCcccCCE
Confidence 125777888877754444443 7788899999998887 44443321 347899999
Q ss_pred eeccCccccccCccCCccccccccCcccceEeeccCccccC-CCcCCCCCCCCcEEEecCCCc
Q 035555 680 LKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKA-LPDLLLQKTTLQKLHIWGGCP 741 (767)
Q Consensus 680 L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-lp~~~~~l~sL~~L~l~~~c~ 741 (767)
|+|++| .+..+ .+..+..+++|+.|++++| .++. .|..+..+++|+.|++ .+|.
T Consensus 328 L~Ls~N-~l~~~-----~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L-~~N~ 382 (455)
T 3v47_A 328 LNLSQN-FLGSI-----DSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELAL-DTNQ 382 (455)
T ss_dssp EECCSS-CCCEE-----CGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC-CSSC
T ss_pred EECCCC-ccCCc-----ChhHhcCcccCCEEECCCC-cccccChhhccccccccEEEC-CCCc
Confidence 999998 44433 2335678999999999999 4554 4778889999999999 6664
No 42
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.77 E-value=6.6e-18 Score=200.47 Aligned_cols=281 Identities=16% Similarity=0.103 Sum_probs=165.4
Q ss_pred cccccCceeeeeccC--CCccc-ccccccCCcccEEeecCCcccccc-chhhcCCCCCcEEEccCCccccccCcccccCc
Q 035555 439 EALKLIKCRRWRCDN--YIKEI-PTNIEKLIHLKYLNLSSQKKIKRL-PETLCELYNLECLAISFCTNLRQLPQGIGKLR 514 (767)
Q Consensus 439 ~~~~~~~~L~~l~l~--~~~~l-p~~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~ 514 (767)
.++...+.++.|+++ .+..+ |..|+++++|++|+|++|..+..+ |..+.++++|++|+|++|......|..++.++
T Consensus 18 ~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 18 QVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp CCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred CCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence 334444567777776 34444 566777777777777777545555 56677777777777777773344466777777
Q ss_pred CCcEeeCCCCCCccccccc--CcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhH-------
Q 035555 515 KLMYLDNDYTNSLRYLPVG--IRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEAR------- 585 (767)
Q Consensus 515 ~L~~L~l~~~~~l~~lp~~--~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~------- 585 (767)
+|++|++++|.....+|.. ++.+++|+.|++..+.... ......+.++++|+.|.+++..--.......
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~--~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~ 175 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS--LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC--CCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCS
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc--cccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCc
Confidence 7777777777333334443 6677777777665554432 1122456677777777776532100000000
Q ss_pred ---------------HhhccCCC------CcCceEEEecCCc-cCCcccc------------------------------
Q 035555 586 ---------------RAELEKKK------NLFDLELRFDCNV-IPKNWIM------------------------------ 613 (767)
Q Consensus 586 ---------------~~~l~~~~------~L~~L~l~~~~~~-~~p~~~~------------------------------ 613 (767)
...+..+. +|+.|++++|... ..|..+.
T Consensus 176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 00111111 2555666555321 1111110
Q ss_pred ------C--CCCccEEEEeccCCCCCCC-CCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccC
Q 035555 614 ------S--LTNLRYLSLSLFKNCEQLL-PLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSY 684 (767)
Q Consensus 614 ------~--l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 684 (767)
. .++|+.|+|++|......+ .+..+++|++|+|++|. ++.++... +.++++|++|+|++
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~-----------~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEA-----------FYGLDNLQVLNLSY 323 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CCEECTTT-----------TTTCSSCCEEEEES
T ss_pred ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CCCCChHH-----------hcCCCCCCEEECCC
Confidence 0 2456666666654332222 25667777777777765 44433221 34788999999988
Q ss_pred ccccccCccCCccccccccCcccceEeeccCccccCCC-cCCCCCCCCcEEEecCCCc
Q 035555 685 MEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALP-DLLLQKTTLQKLHIWGGCP 741 (767)
Q Consensus 685 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~sL~~L~l~~~c~ 741 (767)
|. +..+ .+..+..+++|+.|++++| .+..++ ..+..+++|+.|++ ++|.
T Consensus 324 N~-l~~~-----~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L-s~N~ 373 (844)
T 3j0a_A 324 NL-LGEL-----YSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDL-RDNA 373 (844)
T ss_dssp CC-CSCC-----CSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEE-ETCC
T ss_pred CC-CCcc-----CHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEEC-CCCC
Confidence 83 4333 3335678999999999998 567665 45778999999999 6654
No 43
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.77 E-value=5.1e-18 Score=190.66 Aligned_cols=100 Identities=19% Similarity=0.159 Sum_probs=60.2
Q ss_pred ceeeeeccC--CCcccc-cccccCCcccEEeecCCcccccc-chhhcCCCCCcEEEccCCccccccCcccccCcCCcEee
Q 035555 445 KCRRWRCDN--YIKEIP-TNIEKLIHLKYLNLSSQKKIKRL-PETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLD 520 (767)
Q Consensus 445 ~~L~~l~l~--~~~~lp-~~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~ 520 (767)
+.|+.|+++ .+..++ ..|.++++|++|++++|. ++.+ |..++++++|++|++++|. +..+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNK-LVKISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSSC-CCEEECC--CCCCCSEEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCCc-eeecCcc--ccCCccEEe
Confidence 456666665 334443 456666677777777666 4443 5566666777777777665 5566655 566677777
Q ss_pred CCCCCCcc--cccccCcCCcCCcccceeEec
Q 035555 521 NDYTNSLR--YLPVGIRELIRLRRVRKFVVG 549 (767)
Q Consensus 521 l~~~~~l~--~lp~~~~~l~~L~~L~~~~~~ 549 (767)
+++| .+. .+|..++.+++|+.|++..+.
T Consensus 97 L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 97 LSFN-AFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp CCSS-CCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred ccCC-ccccccchhhhccCCcceEEEecCcc
Confidence 7666 333 245566666666666555433
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=1.4e-18 Score=180.74 Aligned_cols=234 Identities=18% Similarity=0.139 Sum_probs=156.4
Q ss_pred CCcccccccccCCcccEEeecCCccccccchh-hcCCCCCcEEEccCCcccccc---CcccccCcCCcEeeCCCCCCccc
Q 035555 454 YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPET-LCELYNLECLAISFCTNLRQL---PQGIGKLRKLMYLDNDYTNSLRY 529 (767)
Q Consensus 454 ~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~l~~l---p~~~~~l~~L~~L~l~~~~~l~~ 529 (767)
.++.+|..+. ++|++|++++|. ++.+|.. +.++++|++|++++|. +..+ |..+..+++|++|++++| .+..
T Consensus 18 ~l~~ip~~~~--~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~ 92 (306)
T 2z66_A 18 GLTSVPTGIP--SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVIT 92 (306)
T ss_dssp CCSSCCSCCC--TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSC-SEEE
T ss_pred CcccCCCCCC--CCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCC-cccc
Confidence 4667776554 689999999988 7788764 6789999999999887 5433 566777899999999988 6677
Q ss_pred ccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCc-cC
Q 035555 530 LPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNV-IP 608 (767)
Q Consensus 530 lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~ 608 (767)
+|..+..+++|+.|.+..+.... .... ..+..+++|+.|++++|... ..
T Consensus 93 l~~~~~~l~~L~~L~l~~n~l~~--~~~~----------------------------~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 93 MSSNFLGLEQLEHLDFQHSNLKQ--MSEF----------------------------SVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp EEEEEETCTTCCEEECTTSEEES--STTT----------------------------TTTTTCTTCCEEECTTSCCEECS
T ss_pred ChhhcCCCCCCCEEECCCCcccc--cccc----------------------------hhhhhccCCCEEECCCCcCCccc
Confidence 77777778888777554332221 0000 12344556666666666553 34
Q ss_pred CccccCCCCccEEEEeccCCCC-CCC-CCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCcc
Q 035555 609 KNWIMSLTNLRYLSLSLFKNCE-QLL-PLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYME 686 (767)
Q Consensus 609 p~~~~~l~~L~~L~L~~~~~~~-~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 686 (767)
|..+..+++|+.|++++|.... .+| .+..+++|++|++++|. ++.++... +..+++|+.|+|++|
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-----------~~~l~~L~~L~L~~N- 209 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTA-----------FNSLSSLQVLNMSHN- 209 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTT-----------TTTCTTCCEEECTTS-
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCHHH-----------hcCCCCCCEEECCCC-
Confidence 5556677888888888775433 233 36778888888888876 44443221 236788888888887
Q ss_pred ccccCccCCccccccccCcccceEeeccCccccCCCcCCCCC-CCCcEEEecCCCc
Q 035555 687 ELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLLLQK-TTLQKLHIWGGCP 741 (767)
Q Consensus 687 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l-~sL~~L~l~~~c~ 741 (767)
.+..+.. ..+..+++|+.|++++|......|..+..+ ++|+.|++ .+++
T Consensus 210 ~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L-~~N~ 259 (306)
T 2z66_A 210 NFFSLDT-----FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL-TQND 259 (306)
T ss_dssp CCSBCCS-----GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEEC-TTCC
T ss_pred ccCccCh-----hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEc-cCCC
Confidence 3443322 235577888888888885444556666666 48888888 5544
No 45
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=1.3e-17 Score=182.83 Aligned_cols=231 Identities=21% Similarity=0.273 Sum_probs=159.0
Q ss_pred CCcccccccccCCcccEEeecCCccccccc-hhhcCCCCCcEEEccCCccccccC-cccccCcCCcEeeCCCCCCccccc
Q 035555 454 YIKEIPTNIEKLIHLKYLNLSSQKKIKRLP-ETLCELYNLECLAISFCTNLRQLP-QGIGKLRKLMYLDNDYTNSLRYLP 531 (767)
Q Consensus 454 ~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp 531 (767)
.+..+|..+. .++++|+|++|. ++.++ ..+.++++|++|+|++|. +..++ ..+..+++|++|++++| .+..+|
T Consensus 54 ~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~ 128 (440)
T 3zyj_A 54 NLREVPDGIS--TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN-RLTTIP 128 (440)
T ss_dssp CCSSCCSCCC--TTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSS-CCSSCC
T ss_pred CcCcCCCCCC--CCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCC-cCCeeC
Confidence 5677887765 689999999998 66655 678899999999999998 55555 56888999999999998 667776
Q ss_pred c-cCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCC-c-cC
Q 035555 532 V-GIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCN-V-IP 608 (767)
Q Consensus 532 ~-~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~-~~ 608 (767)
. .+..+++|+.|++..+.... ..... +.++++|+.|+++.|.. . ..
T Consensus 129 ~~~~~~l~~L~~L~L~~N~i~~---~~~~~----------------------------~~~l~~L~~L~l~~~~~l~~i~ 177 (440)
T 3zyj_A 129 NGAFVYLSKLKELWLRNNPIES---IPSYA----------------------------FNRIPSLRRLDLGELKRLSYIS 177 (440)
T ss_dssp TTTSCSCSSCCEEECCSCCCCE---ECTTT----------------------------TTTCTTCCEEECCCCTTCCEEC
T ss_pred HhHhhccccCceeeCCCCcccc---cCHHH----------------------------hhhCcccCEeCCCCCCCcceeC
Confidence 5 47778888887654433321 11112 33344555555554322 2 22
Q ss_pred CccccCCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCcccc
Q 035555 609 KNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEEL 688 (767)
Q Consensus 609 p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 688 (767)
+..+..+++|+.|+|++| .++.+|.+..+++|++|+|++|. ++.++... +..+++|+.|+|++| .+
T Consensus 178 ~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~L~~n-~l 243 (440)
T 3zyj_A 178 EGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNH-LSAIRPGS-----------FQGLMHLQKLWMIQS-QI 243 (440)
T ss_dssp TTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSC-CCEECTTT-----------TTTCTTCCEEECTTC-CC
T ss_pred cchhhcccccCeecCCCC-cCccccccCCCcccCEEECCCCc-cCccChhh-----------hccCccCCEEECCCC-ce
Confidence 335667788888888877 55677778888888888888876 55543322 237788888888887 34
Q ss_pred ccCccCCccccccccCcccceEeeccCccccCCC-cCCCCCCCCcEEEecCCCc
Q 035555 689 EEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALP-DLLLQKTTLQKLHIWGGCP 741 (767)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~sL~~L~l~~~c~ 741 (767)
+.+. +..+..+++|+.|+|++| .++.+| ..+..+++|+.|++ .++|
T Consensus 244 ~~~~-----~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L-~~Np 290 (440)
T 3zyj_A 244 QVIE-----RNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHL-HHNP 290 (440)
T ss_dssp CEEC-----TTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEEC-CSSC
T ss_pred eEEC-----hhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEc-CCCC
Confidence 4332 234567888888888887 666666 34566788888888 5544
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=2.9e-18 Score=195.46 Aligned_cols=243 Identities=14% Similarity=0.052 Sum_probs=175.6
Q ss_pred ccCceeeeeccC--CCcccc-cccccCCcccEEeecCCccccccchh-hcCCCCCcEEEccCCccccccCcccccCcCCc
Q 035555 442 KLIKCRRWRCDN--YIKEIP-TNIEKLIHLKYLNLSSQKKIKRLPET-LCELYNLECLAISFCTNLRQLPQGIGKLRKLM 517 (767)
Q Consensus 442 ~~~~~L~~l~l~--~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~ 517 (767)
..++.|+.|+++ .+..+| ..|+++++|++|+|++|. ++.+|.. ++++++|++|+|++|......|..+..+++|+
T Consensus 96 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 174 (597)
T 3oja_B 96 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred cCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCc
Confidence 478889999998 455665 457999999999999999 8888866 58999999999999984444455789999999
Q ss_pred EeeCCCCCCcccccccCcCCcCCcccceeEecCccCC-----------CCChhh--hhcCCCCCCeeeeCCCCCCChhhh
Q 035555 518 YLDNDYTNSLRYLPVGIRELIRLRRVRKFVVGGGYDR-----------ACSLES--LKRLILLRECRIHGLGDVSDVGEA 584 (767)
Q Consensus 518 ~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~-----------~~~~~~--l~~l~~L~~L~i~~l~~~~~~~~~ 584 (767)
+|++++| .+..++ ++.+++|+.|.+..+...... ...+.. ....++|+.|.+++.. +..
T Consensus 175 ~L~L~~N-~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~-l~~---- 246 (597)
T 3oja_B 175 NLQLSSN-RLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN-LTD---- 246 (597)
T ss_dssp EEECTTS-CCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSC-CCC----
T ss_pred EEECcCC-CCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCC-CCC----
Confidence 9999998 555554 455666666644322211100 000000 0011345666665532 111
Q ss_pred HHhhccCCCCcCceEEEecCCccC-CccccCCCCccEEEEeccCCCCCCCC-CCCCCCCCeeeecCCCCceEecccccCC
Q 035555 585 RRAELEKKKNLFDLELRFDCNVIP-KNWIMSLTNLRYLSLSLFKNCEQLLP-LGKLQSLEYLQIGGMHGVKRVGNEFLGV 662 (767)
Q Consensus 585 ~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~ 662 (767)
...+..+++|+.|+|++|..... |..+..+++|+.|+|++|. +..+|. ++.+|+|++|+|++|. ++.++..+
T Consensus 247 -~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~--- 320 (597)
T 3oja_B 247 -TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVERNQ--- 320 (597)
T ss_dssp -CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSC-CCCCGGGH---
T ss_pred -ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCC-CCccCccc---
Confidence 24678899999999999988644 7788899999999999874 444554 5679999999999987 55555433
Q ss_pred CCCCCCccccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCcc
Q 035555 663 ESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFK 717 (767)
Q Consensus 663 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 717 (767)
..+++|+.|+|++| .+..++ +..+++|+.|+|++|+.
T Consensus 321 ---------~~l~~L~~L~L~~N-~l~~~~--------~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 321 ---------PQFDRLENLYLDHN-SIVTLK--------LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp ---------HHHTTCSEEECCSS-CCCCCC--------CCTTCCCSEEECCSSCE
T ss_pred ---------ccCCCCCEEECCCC-CCCCcC--------hhhcCCCCEEEeeCCCC
Confidence 37899999999998 455444 34789999999999863
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.76 E-value=1.5e-17 Score=175.13 Aligned_cols=240 Identities=18% Similarity=0.220 Sum_probs=184.6
Q ss_pred CCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCc-ccccCcCCcEeeCCCCCCcccc-cccCcCCcCCcc
Q 035555 465 LIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQ-GIGKLRKLMYLDNDYTNSLRYL-PVGIRELIRLRR 542 (767)
Q Consensus 465 l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~ 542 (767)
..+|++++++++. ++.+|..+. ++|++|++++|. +..+|. .+..+++|++|++++| .+..+ |..++.+++|+.
T Consensus 30 ~c~l~~l~~~~~~-l~~lp~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 30 QCHLRVVQCSDLG-LEKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLER 104 (330)
T ss_dssp EEETTEEECTTSC-CCSCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCE
T ss_pred cCCCeEEEecCCC-ccccCccCC--CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCE
Confidence 3479999999998 888887654 799999999998 666665 6899999999999999 55555 778999999999
Q ss_pred cceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCc---cCCccccCCCCcc
Q 035555 543 VRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNV---IPKNWIMSLTNLR 619 (767)
Q Consensus 543 L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~p~~~~~l~~L~ 619 (767)
|++..+........ + .++|+.|.+++.. ........+.++++|+.|+++.|... ..+..+..+++|+
T Consensus 105 L~Ls~n~l~~l~~~----~--~~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 105 LYLSKNQLKELPEK----M--PKTLQELRVHENE----ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp EECCSSCCSBCCSS----C--CTTCCEEECCSSC----CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred EECCCCcCCccChh----h--cccccEEECCCCc----ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence 98766554432111 1 2578888887632 22223345788999999999999875 4567788999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCccCCcccc
Q 035555 620 YLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKG 699 (767)
Q Consensus 620 ~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~ 699 (767)
.|++++|. ++.+|. ...++|++|++++|. ++.++... +..+++|+.|++++|. +..+. +.
T Consensus 175 ~L~l~~n~-l~~l~~-~~~~~L~~L~l~~n~-l~~~~~~~-----------~~~l~~L~~L~Ls~n~-l~~~~-----~~ 234 (330)
T 1xku_A 175 YIRIADTN-ITTIPQ-GLPPSLTELHLDGNK-ITKVDAAS-----------LKGLNNLAKLGLSFNS-ISAVD-----NG 234 (330)
T ss_dssp EEECCSSC-CCSCCS-SCCTTCSEEECTTSC-CCEECTGG-----------GTTCTTCCEEECCSSC-CCEEC-----TT
T ss_pred EEECCCCc-cccCCc-cccccCCEEECCCCc-CCccCHHH-----------hcCCCCCCEEECCCCc-CceeC-----hh
Confidence 99999884 455654 234899999999987 55554322 2478999999999984 44433 23
Q ss_pred ccccCcccceEeeccCccccCCCcCCCCCCCCcEEEecCCCc
Q 035555 700 EIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGCP 741 (767)
Q Consensus 700 ~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c~ 741 (767)
.+..+++|+.|++++| .++.+|..+..+++|+.|++ .+|+
T Consensus 235 ~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l-~~N~ 274 (330)
T 1xku_A 235 SLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYL-HNNN 274 (330)
T ss_dssp TGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEEC-CSSC
T ss_pred hccCCCCCCEEECCCC-cCccCChhhccCCCcCEEEC-CCCc
Confidence 4678999999999999 78899999999999999999 7664
No 48
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.76 E-value=1.1e-17 Score=198.66 Aligned_cols=273 Identities=16% Similarity=0.164 Sum_probs=188.2
Q ss_pred ccCceeeeeccCCC---ccc-ccccccCCcccEEeecCCccccc-cchhhcCCCCCcEEEccCCccccccCcc--cccCc
Q 035555 442 KLIKCRRWRCDNYI---KEI-PTNIEKLIHLKYLNLSSQKKIKR-LPETLCELYNLECLAISFCTNLRQLPQG--IGKLR 514 (767)
Q Consensus 442 ~~~~~L~~l~l~~~---~~l-p~~~~~l~~L~~L~L~~~~~~~~-lp~~~~~l~~L~~L~L~~~~~l~~lp~~--~~~l~ 514 (767)
..++.|++|+++.. ..+ |..|+++++|++|+|++|. +.. .|..++++++|++|+|++|.....+|.. ++.++
T Consensus 45 ~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 57888999999843 345 6789999999999999999 554 4788999999999999999844446654 88999
Q ss_pred CCcEeeCCCCCCccccc--ccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCC------------------------
Q 035555 515 KLMYLDNDYTNSLRYLP--VGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLR------------------------ 568 (767)
Q Consensus 515 ~L~~L~l~~~~~l~~lp--~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~------------------------ 568 (767)
+|++|++++| .+..++ ..++.+++|+.|++..+.........+..+.. ++|+
T Consensus 124 ~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 201 (844)
T 3j0a_A 124 ALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG-KTLSFFSLAANSLYSRVSVDWGKCMNPF 201 (844)
T ss_dssp SCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH-CSSCCCEECCSBSCCCCCCCCCSSSCTT
T ss_pred CCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC-CccceEECCCCccccccccchhhcCCcc
Confidence 9999999998 444442 46888999998877655443221122222210 3333
Q ss_pred ------CeeeeCCCCCCChhh--------------------------------hHHhhccC--CCCcCceEEEecCCcc-
Q 035555 569 ------ECRIHGLGDVSDVGE--------------------------------ARRAELEK--KKNLFDLELRFDCNVI- 607 (767)
Q Consensus 569 ------~L~i~~l~~~~~~~~--------------------------------~~~~~l~~--~~~L~~L~l~~~~~~~- 607 (767)
.|++++..--..... .....+.+ .++|+.|++++|....
T Consensus 202 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~ 281 (844)
T 3j0a_A 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL 281 (844)
T ss_dssp TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE
T ss_pred ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccccc
Confidence 344433210000000 00111122 2689999999888754
Q ss_pred CCccccCCCCccEEEEeccCCCCCCC-CCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCcc
Q 035555 608 PKNWIMSLTNLRYLSLSLFKNCEQLL-PLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYME 686 (767)
Q Consensus 608 ~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 686 (767)
.|..+..+++|+.|+|++|......+ .+..+++|++|+|++|. ++.+... .+..+++|+.|++++|
T Consensus 282 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-----------~~~~l~~L~~L~L~~N- 348 (844)
T 3j0a_A 282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGELYSS-----------NFYGLPKVAYIDLQKN- 348 (844)
T ss_dssp CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC-CSCCCSC-----------SCSSCTTCCEEECCSC-
T ss_pred ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC-CCccCHH-----------HhcCCCCCCEEECCCC-
Confidence 46677899999999999986544334 47889999999999987 4433221 1348899999999998
Q ss_pred ccccCccCCccccccccCcccceEeeccCccccCCCcCCCCCCCCcEEEecCCCc
Q 035555 687 ELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGCP 741 (767)
Q Consensus 687 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c~ 741 (767)
.+..+. +..+..+++|+.|++++| .++.++. +++|+.|++ .+|+
T Consensus 349 ~i~~~~-----~~~~~~l~~L~~L~Ls~N-~l~~i~~----~~~L~~L~l-~~N~ 392 (844)
T 3j0a_A 349 HIAIIQ-----DQTFKFLEKLQTLDLRDN-ALTTIHF----IPSIPDIFL-SGNK 392 (844)
T ss_dssp CCCCCC-----SSCSCSCCCCCEEEEETC-CSCCCSS----CCSCSEEEE-ESCC
T ss_pred CCCccC-----hhhhcCCCCCCEEECCCC-CCCcccC----CCCcchhcc-CCCC
Confidence 454433 335678999999999998 6776664 788899998 6653
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=1.3e-17 Score=192.35 Aligned_cols=100 Identities=18% Similarity=0.127 Sum_probs=58.8
Q ss_pred eeeeeccC--CCcccc-cccccCCcccEEeecCCccccccc-hhhcCCCCCcEEEccCCccccccCc-ccccCcCCcEee
Q 035555 446 CRRWRCDN--YIKEIP-TNIEKLIHLKYLNLSSQKKIKRLP-ETLCELYNLECLAISFCTNLRQLPQ-GIGKLRKLMYLD 520 (767)
Q Consensus 446 ~L~~l~l~--~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~ 520 (767)
.+++|+++ .++.+| ..|.++++|++|+|++|. ++.+| .+|.+|++|++|+|++|. +..+|. .|.++++|++|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEE
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEE
Confidence 45666665 455554 356666666666666666 55554 346666666666666665 555554 356666666666
Q ss_pred CCCCCCcccccc-cCcCCcCCcccceeEe
Q 035555 521 NDYTNSLRYLPV-GIRELIRLRRVRKFVV 548 (767)
Q Consensus 521 l~~~~~l~~lp~-~~~~l~~L~~L~~~~~ 548 (767)
+++| .+..+|. .++.+++|+.|++..+
T Consensus 131 Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N 158 (635)
T 4g8a_A 131 AVET-NLASLENFPIGHLKTLKELNVAHN 158 (635)
T ss_dssp CTTS-CCCCSTTCCCTTCTTCCEEECCSS
T ss_pred CCCC-cCCCCChhhhhcCcccCeeccccC
Confidence 6666 4445543 3556666666654443
No 50
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.75 E-value=2.7e-17 Score=186.35 Aligned_cols=123 Identities=20% Similarity=0.147 Sum_probs=95.8
Q ss_pred CceeeeeccC--CCcccc-cccccCCcccEEeecCCcccccc-chhhcCCCCCcEEEccCCccccccCcccccCcCCcEe
Q 035555 444 IKCRRWRCDN--YIKEIP-TNIEKLIHLKYLNLSSQKKIKRL-PETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYL 519 (767)
Q Consensus 444 ~~~L~~l~l~--~~~~lp-~~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L 519 (767)
.+.|+.|+++ .+..++ ..|+++++|++|++++|. ++.+ |..+.++++|++|++++|. +..+|.. .+++|++|
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L 126 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--PMASLRHL 126 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTSC-CCEECSC--CCTTCSEE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--ccccCCEE
Confidence 3678899888 466665 689999999999999998 6665 6779999999999999998 7789877 89999999
Q ss_pred eCCCCCCcccc--cccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCC
Q 035555 520 DNDYTNSLRYL--PVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGL 575 (767)
Q Consensus 520 ~l~~~~~l~~l--p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l 575 (767)
++++| .+..+ |..++.+++|+.|++..+... ...+..+..+ +|+.|.+...
T Consensus 127 ~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~---~~~~~~l~~L-~L~~L~L~~n 179 (562)
T 3a79_B 127 DLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFR---QLDLLPVAHL-HLSCILLDLV 179 (562)
T ss_dssp ECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCC---TTTTGGGTTS-CEEEEEEEES
T ss_pred ECCCC-CccccCchHhhcccCcccEEecCCCccc---cCchhhhhhc-eeeEEEeecc
Confidence 99999 55554 467899999999987765443 2334444444 3477777653
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=1.9e-17 Score=186.97 Aligned_cols=234 Identities=18% Similarity=0.081 Sum_probs=152.8
Q ss_pred ceeeeeccC--CCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCC
Q 035555 445 KCRRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDND 522 (767)
Q Consensus 445 ~~L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~ 522 (767)
+.|+.|+++ .++.+|. .+++|++|+|++|. ++.+|. .+++|++|++++|. +..+|. .+++|++|+++
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIF 129 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECC
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECC
Confidence 456666665 3455554 45667777777766 666665 55667777777665 555655 45666777776
Q ss_pred CCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEe
Q 035555 523 YTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRF 602 (767)
Q Consensus 523 ~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 602 (767)
+| .+..+|.. +++|+.|++..+..... . ..+.+|+.|.+.+.. +.... ..+++|+.|++++
T Consensus 130 ~N-~l~~lp~~---l~~L~~L~Ls~N~l~~l-----~--~~~~~L~~L~L~~N~-l~~l~-------~~~~~L~~L~Ls~ 190 (622)
T 3g06_A 130 GN-QLTSLPVL---PPGLQELSVSDNQLASL-----P--ALPSELCKLWAYNNQ-LTSLP-------MLPSGLQELSVSD 190 (622)
T ss_dssp SS-CCSCCCCC---CTTCCEEECCSSCCSCC-----C--CCCTTCCEEECCSSC-CSCCC-------CCCTTCCEEECCS
T ss_pred CC-CCCcCCCC---CCCCCEEECcCCcCCCc-----C--CccCCCCEEECCCCC-CCCCc-------ccCCCCcEEECCC
Confidence 66 55556553 35566665443333221 0 123445555554421 11110 3457788888888
Q ss_pred cCCccCCccccCCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeec
Q 035555 603 DCNVIPKNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKF 682 (767)
Q Consensus 603 ~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 682 (767)
|.+..+|. .+++|+.|++++| .++.+|. .+++|++|++++|. ++.++ ..+++|+.|+|
T Consensus 191 N~l~~l~~---~~~~L~~L~L~~N-~l~~l~~--~~~~L~~L~Ls~N~-L~~lp---------------~~l~~L~~L~L 248 (622)
T 3g06_A 191 NQLASLPT---LPSELYKLWAYNN-RLTSLPA--LPSGLKELIVSGNR-LTSLP---------------VLPSELKELMV 248 (622)
T ss_dssp SCCSCCCC---CCTTCCEEECCSS-CCSSCCC--CCTTCCEEECCSSC-CSCCC---------------CCCTTCCEEEC
T ss_pred CCCCCCCC---ccchhhEEECcCC-cccccCC--CCCCCCEEEccCCc-cCcCC---------------CCCCcCcEEEC
Confidence 87776665 3467888888876 4455554 35888889888875 54443 16789999999
Q ss_pred cCccccccCccCCccccccccCcccceEeeccCccccCCCcCCCCCCCCcEEEecCCCch
Q 035555 683 SYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGCPI 742 (767)
Q Consensus 683 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c~~ 742 (767)
++| .++.++. .+++|+.|++++| .++.+|..+..+++|+.|++ .+|+-
T Consensus 249 s~N-~L~~lp~---------~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L-~~N~l 296 (622)
T 3g06_A 249 SGN-RLTSLPM---------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNL-EGNPL 296 (622)
T ss_dssp CSS-CCSCCCC---------CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEEC-CSCCC
T ss_pred CCC-CCCcCCc---------ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEe-cCCCC
Confidence 998 5665443 5789999999999 78899998999999999999 77763
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.74 E-value=9.8e-18 Score=190.75 Aligned_cols=146 Identities=21% Similarity=0.189 Sum_probs=87.3
Q ss_pred hhccCCCCcCceEEEecCCccCCccccCCCCccEEEEeccCCCCCCC--CCCCCCCCCeeeecCCCCceEecccccCCCC
Q 035555 587 AELEKKKNLFDLELRFDCNVIPKNWIMSLTNLRYLSLSLFKNCEQLL--PLGKLQSLEYLQIGGMHGVKRVGNEFLGVES 664 (767)
Q Consensus 587 ~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 664 (767)
..+.++++|+.|++++|.....|..+..+++|+.|++++|......+ .+..+++|++|++++|......+..+.+...
T Consensus 367 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 446 (570)
T 2z63_A 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446 (570)
T ss_dssp HHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred ccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCc
Confidence 34567788888888888776666556677777777777765333322 3566777777777766522212211111000
Q ss_pred C-------------CCCccccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCccccCCC-cCCCCCCC
Q 035555 665 D-------------TNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALP-DLLLQKTT 730 (767)
Q Consensus 665 ~-------------~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~s 730 (767)
. ..+..+..+++|+.|++++|. ++.+ .+..+..+++|+.|++++| .++.+| ..+..+++
T Consensus 447 L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~-----~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~ 519 (570)
T 2z63_A 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQL-----SPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTS 519 (570)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEE-----CTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTT
T ss_pred CcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccC-----ChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccC
Confidence 0 001223466777777777763 3322 2334567888888888888 566555 45677888
Q ss_pred CcEEEecCCC
Q 035555 731 LQKLHIWGGC 740 (767)
Q Consensus 731 L~~L~l~~~c 740 (767)
|+.|++ .+|
T Consensus 520 L~~L~l-~~N 528 (570)
T 2z63_A 520 LQKIWL-HTN 528 (570)
T ss_dssp CCEEEC-CSS
T ss_pred CcEEEe-cCC
Confidence 888888 543
No 53
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.74 E-value=2.3e-17 Score=191.79 Aligned_cols=80 Identities=15% Similarity=0.062 Sum_probs=37.4
Q ss_pred CceeeeeccC--CCccccc-ccccCCcccEEeecCCccccccc-hhhcCCCCCcEEEccCCccccccCcccccCcCCcEe
Q 035555 444 IKCRRWRCDN--YIKEIPT-NIEKLIHLKYLNLSSQKKIKRLP-ETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYL 519 (767)
Q Consensus 444 ~~~L~~l~l~--~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L 519 (767)
++.|++|+++ .+..+|. .|+++++|++|++++|. +..+| ..++++++|++|++++|......|..++.+++|++|
T Consensus 72 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred ccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence 4445555544 2334443 35555555555555554 33333 344555555555555554222233334445555555
Q ss_pred eCCCC
Q 035555 520 DNDYT 524 (767)
Q Consensus 520 ~l~~~ 524 (767)
++++|
T Consensus 151 ~L~~n 155 (680)
T 1ziw_A 151 LLSNN 155 (680)
T ss_dssp ECCSS
T ss_pred EccCC
Confidence 55544
No 54
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.73 E-value=3.7e-17 Score=189.99 Aligned_cols=277 Identities=16% Similarity=0.094 Sum_probs=142.4
Q ss_pred cCceeeeeccC--CCccc-ccccccCCcccEEeecCCccccccch-hhcCCCCCcEEEccCCccccccC-cccccCcCCc
Q 035555 443 LIKCRRWRCDN--YIKEI-PTNIEKLIHLKYLNLSSQKKIKRLPE-TLCELYNLECLAISFCTNLRQLP-QGIGKLRKLM 517 (767)
Q Consensus 443 ~~~~L~~l~l~--~~~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~ 517 (767)
.++.|++|+++ .+..+ |..|+++++|++|++++|. ++.+|. .+.++++|++|++++|. +..+| ..++.+++|+
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLI 124 (680)
T ss_dssp GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCC
T ss_pred CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCC
Confidence 45566666665 23333 4556667777777777766 556654 46667777777777766 44444 3566677777
Q ss_pred EeeCCCCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhh--cCCCCCCeeeeCCCCCCChhhh-----------
Q 035555 518 YLDNDYTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLK--RLILLRECRIHGLGDVSDVGEA----------- 584 (767)
Q Consensus 518 ~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~--~l~~L~~L~i~~l~~~~~~~~~----------- 584 (767)
+|++++|......|..++.+++|+.|.+..+... ......+. .+++|+.|++++.. +......
T Consensus 125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 200 (680)
T 1ziw_A 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ---ALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGL 200 (680)
T ss_dssp EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC---CBCHHHHGGGTTCEESEEECTTCC-CCCBCTTGGGGSSEECEE
T ss_pred EEECCCCcccccCchhhcccccCCEEEccCCccc---ccCHHHhhccccccccEEECCCCc-ccccChhhhhhhhhhhhh
Confidence 7777766332333444566666666655433222 11122221 23445555554321 1100000
Q ss_pred --------------HHhhccCCCCcCceEEEecCCc-cCCccccCCC--CccEEEEeccCCCCCCC-CCCCCCCCCeeee
Q 035555 585 --------------RRAELEKKKNLFDLELRFDCNV-IPKNWIMSLT--NLRYLSLSLFKNCEQLL-PLGKLQSLEYLQI 646 (767)
Q Consensus 585 --------------~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~l~--~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L 646 (767)
.+..+ ..++|+.|++++|... ..|.++..++ +|+.|+|++|......+ .++.+++|++|++
T Consensus 201 ~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (680)
T 1ziw_A 201 FLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279 (680)
T ss_dssp ECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred hccccccChhhHHHHHHHh-hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeC
Confidence 00000 2255666666666554 2345555553 38888888775433322 3677888888888
Q ss_pred cCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCc---cCCccccccccCcccceEeeccCccccCC-C
Q 035555 647 GGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWD---FGTATKGEIIIMPRLSCLIIFGCFKLKAL-P 722 (767)
Q Consensus 647 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~---~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-p 722 (767)
++|. +..+.... +..+++|+.|+++++..-..+. ........+..+++|+.|++++| .+..+ |
T Consensus 280 ~~n~-l~~~~~~~-----------~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~ 346 (680)
T 1ziw_A 280 EYNN-IQHLFSHS-----------LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKS 346 (680)
T ss_dssp CSCC-BSEECTTT-----------TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCT
T ss_pred CCCc-cCccChhh-----------hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCCh
Confidence 8776 33332211 2356666666666532111000 00001113445666666666666 33333 3
Q ss_pred cCCCCCCCCcEEEecCCC
Q 035555 723 DLLLQKTTLQKLHIWGGC 740 (767)
Q Consensus 723 ~~~~~l~sL~~L~l~~~c 740 (767)
..+..+++|+.|++ .+|
T Consensus 347 ~~~~~l~~L~~L~L-s~n 363 (680)
T 1ziw_A 347 NMFTGLINLKYLSL-SNS 363 (680)
T ss_dssp TTTTTCTTCCEEEC-TTC
T ss_pred hHhccccCCcEEEC-CCC
Confidence 44555666666666 444
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=177.05 Aligned_cols=251 Identities=16% Similarity=0.119 Sum_probs=184.5
Q ss_pred CceeeeeccC--CCccccc-ccccCCcccEEeecCCcccccc-chhhcCCCCCcEEEccCCccccccCcc-cccCcCCcE
Q 035555 444 IKCRRWRCDN--YIKEIPT-NIEKLIHLKYLNLSSQKKIKRL-PETLCELYNLECLAISFCTNLRQLPQG-IGKLRKLMY 518 (767)
Q Consensus 444 ~~~L~~l~l~--~~~~lp~-~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~~ 518 (767)
.+.|+.|+++ .+..+|. .+.++++|++|++++|. ++.+ |..+.++++|++|++++|. +..+|.. ++.+++|++
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSE
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCE
Confidence 4578888888 4667765 79999999999999998 6665 5679999999999999998 7788876 889999999
Q ss_pred eeCCCCCCcccccc--cCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcC
Q 035555 519 LDNDYTNSLRYLPV--GIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLF 596 (767)
Q Consensus 519 L~l~~~~~l~~lp~--~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~ 596 (767)
|++++| .+..+|. .++.+++|+.|++..+.... ......+..+++|+.|.+++.. ........+..+++|+
T Consensus 129 L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~l~~l~~L~ 201 (353)
T 2z80_A 129 LNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFT--KIQRKDFAGLTFLEELEIDASD----LQSYEPKSLKSIQNVS 201 (353)
T ss_dssp EECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCC--EECTTTTTTCCEEEEEEEEETT----CCEECTTTTTTCSEEE
T ss_pred EECCCC-CCcccCchhhhccCCCCcEEECCCCcccc--ccCHHHccCCCCCCEEECCCCC----cCccCHHHHhccccCC
Confidence 999999 6778876 68889999999877653211 2233467778888888888632 2222345678899999
Q ss_pred ceEEEecCCccCCcccc-CCCCccEEEEeccCCCCC----CCCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccc
Q 035555 597 DLELRFDCNVIPKNWIM-SLTNLRYLSLSLFKNCEQ----LLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSV 671 (767)
Q Consensus 597 ~L~l~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~----l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~ 671 (767)
.|++++|....+|..+. .+++|+.|++++|..... ++.....+.|+.+++.++. +........ +..+
T Consensus 202 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~~l-------~~~l 273 (353)
T 2z80_A 202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK-ITDESLFQV-------MKLL 273 (353)
T ss_dssp EEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB-CCHHHHHHH-------HHHH
T ss_pred eecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc-ccCcchhhh-------HHHH
Confidence 99999999877776544 589999999999864332 2223457788888888865 221100000 0113
Q ss_pred cCCcccceeeccCccccccCccCCccccccccCcccceEeeccCcc
Q 035555 672 IAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFK 717 (767)
Q Consensus 672 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 717 (767)
..+++|+.|+|++| .++.++. ..+..+++|+.|++++|+.
T Consensus 274 ~~l~~L~~L~Ls~N-~l~~i~~-----~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 274 NQISGLLELEFSRN-QLKSVPD-----GIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp HTCTTCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSSCB
T ss_pred hcccCCCEEECCCC-CCCccCH-----HHHhcCCCCCEEEeeCCCc
Confidence 47899999999998 5655443 2346899999999999964
No 56
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=1.1e-16 Score=159.90 Aligned_cols=207 Identities=17% Similarity=0.134 Sum_probs=143.9
Q ss_pred CCcccccccccCCcccEEeecCCccccccch-hhcCCCCCcEEEccCCccccccCc-ccccCcCCcEeeCCCCCCccccc
Q 035555 454 YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPE-TLCELYNLECLAISFCTNLRQLPQ-GIGKLRKLMYLDNDYTNSLRYLP 531 (767)
Q Consensus 454 ~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp 531 (767)
.++.+|. +. .+|++|++++|. ++.+|. .+.++++|++|++++|..+..+|. .+..+++|++|++++|..+..+|
T Consensus 22 ~l~~ip~-~~--~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 22 DIQRIPS-LP--PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp SCSSCCC-CC--TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred CccccCC-CC--CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 4667776 43 388999999988 777765 688889999999998865666665 67888889999888722555554
Q ss_pred c-cCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCCc
Q 035555 532 V-GIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPKN 610 (767)
Q Consensus 532 ~-~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~ 610 (767)
. .+..+ ++|+.|++++|....+|.
T Consensus 98 ~~~f~~l-------------------------------------------------------~~L~~L~l~~n~l~~lp~ 122 (239)
T 2xwt_C 98 PDALKEL-------------------------------------------------------PLLKFLGIFNTGLKMFPD 122 (239)
T ss_dssp TTSEECC-------------------------------------------------------TTCCEEEEEEECCCSCCC
T ss_pred HHHhCCC-------------------------------------------------------CCCCEEeCCCCCCccccc
Confidence 2 23333 344455555555555554
Q ss_pred cccCCCCcc---EEEEeccCCCCCCCC--CCCCCCCC-eeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccC
Q 035555 611 WIMSLTNLR---YLSLSLFKNCEQLLP--LGKLQSLE-YLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSY 684 (767)
Q Consensus 611 ~~~~l~~L~---~L~L~~~~~~~~l~~--l~~l~~L~-~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 684 (767)
+..+++|+ .|++++|..++.++. +..+++|+ +|++++|. ++.++...+ ..++|+.|++++
T Consensus 123 -~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~------------~~~~L~~L~L~~ 188 (239)
T 2xwt_C 123 -LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAF------------NGTKLDAVYLNK 188 (239)
T ss_dssp -CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTT------------TTCEEEEEECTT
T ss_pred -cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhc------------CCCCCCEEEcCC
Confidence 55556665 888888755565554 77888898 99998876 566665332 227899999988
Q ss_pred ccccccCccCCccccccccC-cccceEeeccCccccCCCcCCCCCCCCcEEEecCCCch
Q 035555 685 MEELEEWDFGTATKGEIIIM-PRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGCPI 742 (767)
Q Consensus 685 ~~~l~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c~~ 742 (767)
|..++.++.. .+..+ ++|+.|++++| .++.+|.. .+++|+.|++ .+|..
T Consensus 189 n~~l~~i~~~-----~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l-~~~~~ 238 (239)
T 2xwt_C 189 NKYLTVIDKD-----AFGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIA-RNTWT 238 (239)
T ss_dssp CTTCCEECTT-----TTTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEEC-TTC--
T ss_pred CCCcccCCHH-----HhhccccCCcEEECCCC-ccccCChh--HhccCceeec-cCccC
Confidence 8556655432 35567 89999999997 67888865 5789999999 77764
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.71 E-value=3.6e-17 Score=170.10 Aligned_cols=216 Identities=19% Similarity=0.142 Sum_probs=156.4
Q ss_pred cEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcc-cccCcCCcEeeCCCCCCcccc---cccCcCCcCCcccc
Q 035555 469 KYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQG-IGKLRKLMYLDNDYTNSLRYL---PVGIRELIRLRRVR 544 (767)
Q Consensus 469 ~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~l---p~~~~~l~~L~~L~ 544 (767)
+.++.+++. ++.+|..+. ++|++|++++|. +..+|.. +..+++|++|++++| .+..+ |..+..+++|+.|+
T Consensus 10 ~~l~c~~~~-l~~ip~~~~--~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKG-LTSVPTGIP--SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSC-CSSCCSCCC--TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEE
T ss_pred CEEEcCCCC-cccCCCCCC--CCCCEEECCCCc-cCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEE
Confidence 568888887 888887553 689999999998 7788875 689999999999998 44433 34444556666664
Q ss_pred eeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCC--ccccCCCCccEEE
Q 035555 545 KFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPK--NWIMSLTNLRYLS 622 (767)
Q Consensus 545 ~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p--~~~~~l~~L~~L~ 622 (767)
+..+.... ....+..+++|+.|++++|.....+ ..+..+++|++|+
T Consensus 85 Ls~n~i~~--------------------------------l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 132 (306)
T 2z66_A 85 LSFNGVIT--------------------------------MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 132 (306)
T ss_dssp CCSCSEEE--------------------------------EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEE
T ss_pred CCCCcccc--------------------------------ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEE
Confidence 43221110 1123556778888888888776655 3677899999999
Q ss_pred EeccCCCCCCCC-CCCCCCCCeeeecCCCCce-EecccccCCCCCCCCccccCCcccceeeccCccccccCccCCccccc
Q 035555 623 LSLFKNCEQLLP-LGKLQSLEYLQIGGMHGVK-RVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGE 700 (767)
Q Consensus 623 L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~ 700 (767)
+++|......+. +..+++|++|++++|.... .++.. +..+++|+.|++++| .++.+ .+..
T Consensus 133 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------------~~~l~~L~~L~Ls~n-~l~~~-----~~~~ 194 (306)
T 2z66_A 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI------------FTELRNLTFLDLSQC-QLEQL-----SPTA 194 (306)
T ss_dssp CTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC------------CTTCTTCCEEECTTS-CCCEE-----CTTT
T ss_pred CCCCcCCccchhhcccCcCCCEEECCCCccccccchhH------------HhhCcCCCEEECCCC-CcCCc-----CHHH
Confidence 999865444443 7889999999999986221 12322 348899999999998 44443 2335
Q ss_pred cccCcccceEeeccCccccCCC-cCCCCCCCCcEEEecCCCc
Q 035555 701 IIIMPRLSCLIIFGCFKLKALP-DLLLQKTTLQKLHIWGGCP 741 (767)
Q Consensus 701 ~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~sL~~L~l~~~c~ 741 (767)
+..+++|+.|++++| .++.++ ..+..+++|+.|++ ++|+
T Consensus 195 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L-~~N~ 234 (306)
T 2z66_A 195 FNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDY-SLNH 234 (306)
T ss_dssp TTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEEC-TTSC
T ss_pred hcCCCCCCEEECCCC-ccCccChhhccCcccCCEeEC-CCCC
Confidence 668999999999999 566665 46778999999999 7774
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=2.5e-16 Score=161.90 Aligned_cols=87 Identities=22% Similarity=0.281 Sum_probs=62.8
Q ss_pred CCcccccccccCCcccEEeecCCccccccc-hhhcCCCCCcEEEccCCcccccc-CcccccCcCCcEeeCCCCCCcccc-
Q 035555 454 YIKEIPTNIEKLIHLKYLNLSSQKKIKRLP-ETLCELYNLECLAISFCTNLRQL-PQGIGKLRKLMYLDNDYTNSLRYL- 530 (767)
Q Consensus 454 ~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~l- 530 (767)
.+..+|..+ .++|++|++++|. ++.+| ..+.++++|++|++++|. +..+ |..+..+++|++|++++|..+..+
T Consensus 22 ~l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~ 97 (285)
T 1ozn_A 22 GLQAVPVGI--PAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVD 97 (285)
T ss_dssp CCSSCCTTC--CTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCC
T ss_pred CcccCCcCC--CCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccC
Confidence 466777654 4689999999988 66665 568889999999999887 5444 667888899999999888435555
Q ss_pred cccCcCCcCCcccc
Q 035555 531 PVGIRELIRLRRVR 544 (767)
Q Consensus 531 p~~~~~l~~L~~L~ 544 (767)
|..+..+++|+.|.
T Consensus 98 ~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 98 PATFHGLGRLHTLH 111 (285)
T ss_dssp TTTTTTCTTCCEEE
T ss_pred HHHhcCCcCCCEEE
Confidence 34455555555553
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=1.7e-18 Score=180.98 Aligned_cols=235 Identities=15% Similarity=0.079 Sum_probs=109.3
Q ss_pred ccCCcccEEeecCCccccccc-hhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCcccccccCcCCcCCc
Q 035555 463 EKLIHLKYLNLSSQKKIKRLP-ETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPVGIRELIRLR 541 (767)
Q Consensus 463 ~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~ 541 (767)
..+++|++|++++|. ++.++ ..+.++++|++|++++|. +...+. +..+++|++|++++| .+..+|. .++|+
T Consensus 31 ~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~~----~~~L~ 102 (317)
T 3o53_A 31 QSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIE 102 (317)
T ss_dssp TTGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSS-EEEEEEE----CTTCC
T ss_pred ccCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCC-ccccccC----CCCcC
Confidence 345567777777766 44443 456667777777777666 443333 666667777777666 4444432 24555
Q ss_pred ccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccC-Cccc-cCCCCcc
Q 035555 542 RVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIP-KNWI-MSLTNLR 619 (767)
Q Consensus 542 ~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~-~~l~~L~ 619 (767)
.|.+..+..... . ...+++|+.|.+++.. ........+..+++|+.|++++|..... |..+ ..+++|+
T Consensus 103 ~L~l~~n~l~~~---~---~~~~~~L~~L~l~~N~----l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 103 TLHAANNNISRV---S---CSRGQGKKNIYLANNK----ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (317)
T ss_dssp EEECCSSCCSEE---E---ECCCSSCEEEECCSSC----CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred EEECCCCccCCc---C---ccccCCCCEEECCCCC----CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCC
Confidence 554332222110 0 1112334444443311 1111112333445555555555544322 2222 2455555
Q ss_pred EEEEeccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCccCCcccc
Q 035555 620 YLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKG 699 (767)
Q Consensus 620 ~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~ 699 (767)
.|+|++|. ++.++....+++|++|++++|. ++.++..+ ..+++|+.|+|++| .++.++.
T Consensus 173 ~L~L~~N~-l~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~------------~~l~~L~~L~L~~N-~l~~l~~------ 231 (317)
T 3o53_A 173 HLNLQYNF-IYDVKGQVVFAKLKTLDLSSNK-LAFMGPEF------------QSAAGVTWISLRNN-KLVLIEK------ 231 (317)
T ss_dssp EEECTTSC-CCEEECCCCCTTCCEEECCSSC-CCEECGGG------------GGGTTCSEEECTTS-CCCEECT------
T ss_pred EEECCCCc-CcccccccccccCCEEECCCCc-CCcchhhh------------cccCcccEEECcCC-cccchhh------
Confidence 55555542 3333444445555555555554 34443321 14455555555555 3332221
Q ss_pred ccccCcccceEeeccCccc-cCCCcCCCCCCCCcEEEe
Q 035555 700 EIIIMPRLSCLIIFGCFKL-KALPDLLLQKTTLQKLHI 736 (767)
Q Consensus 700 ~~~~~~~L~~L~l~~c~~l-~~lp~~~~~l~sL~~L~l 736 (767)
.+..+++|+.|++++|+.. ..+|..+..++.|+.|++
T Consensus 232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l 269 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (317)
T ss_dssp TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHH
T ss_pred HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEEC
Confidence 2334555555555555332 133444444444555444
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=4.1e-18 Score=188.62 Aligned_cols=232 Identities=16% Similarity=0.096 Sum_probs=116.0
Q ss_pred CcccEEeecCCcccccc-chhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCcccccccCcCCcCCcccc
Q 035555 466 IHLKYLNLSSQKKIKRL-PETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPVGIRELIRLRRVR 544 (767)
Q Consensus 466 ~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~ 544 (767)
++|++|+|++|. ++.+ |..+.++++|++|+|++|. +...++ +..+++|++|++++| .+..+|.. ++|+.|+
T Consensus 34 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~~----~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELLVG----PSIETLH 105 (487)
T ss_dssp GGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSS-EEEEEEEC----TTCCEEE
T ss_pred CCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCC-cCCCCCCC----CCcCEEE
Confidence 377888888777 5544 4567777888888888777 444443 777777888888777 55555432 5555554
Q ss_pred eeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCcc-CCcccc-CCCCccEEE
Q 035555 545 KFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVI-PKNWIM-SLTNLRYLS 622 (767)
Q Consensus 545 ~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~~~~-~l~~L~~L~ 622 (767)
+..+..... . ...+++|+.|.+++.. ........+.++++|+.|++++|.... .|..+. .+++|+.|+
T Consensus 106 L~~N~l~~~---~---~~~l~~L~~L~L~~N~----l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 106 AANNNISRV---S---CSRGQGKKNIYLANNK----ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp CCSSCCCCE---E---ECCCSSCEEEECCSSC----CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CcCCcCCCC---C---ccccCCCCEEECCCCC----CCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 433322210 0 0123344444444311 111112233445555555555555432 233333 455555665
Q ss_pred EeccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCccCCccccccc
Q 035555 623 LSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEII 702 (767)
Q Consensus 623 L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 702 (767)
|++|. +..++....+++|++|+|++|. ++.++..+ ..+++|+.|+|++| .+..++. .+.
T Consensus 176 Ls~N~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~------------~~l~~L~~L~Ls~N-~l~~lp~------~l~ 234 (487)
T 3oja_A 176 LQYNF-IYDVKGQVVFAKLKTLDLSSNK-LAFMGPEF------------QSAAGVTWISLRNN-KLVLIEK------ALR 234 (487)
T ss_dssp CTTSC-CCEEECCCCCTTCCEEECCSSC-CCEECGGG------------GGGTTCSEEECTTS-CCCEECT------TCC
T ss_pred cCCCc-cccccccccCCCCCEEECCCCC-CCCCCHhH------------cCCCCccEEEecCC-cCcccch------hhc
Confidence 55542 3334444455555555555554 44443322 14555555555555 2332221 233
Q ss_pred cCcccceEeeccCccc-cCCCcCCCCCCCCcEEEe
Q 035555 703 IMPRLSCLIIFGCFKL-KALPDLLLQKTTLQKLHI 736 (767)
Q Consensus 703 ~~~~L~~L~l~~c~~l-~~lp~~~~~l~sL~~L~l 736 (767)
.+++|+.|++++|+.. ..+|..+..++.|+.|.+
T Consensus 235 ~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 4555555555555332 133333333444444333
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.70 E-value=3.3e-17 Score=179.49 Aligned_cols=254 Identities=17% Similarity=0.106 Sum_probs=135.8
Q ss_pred ceeeeeccC--CCcccccccccCCcccEEeecCCccccccchhhcCCCCC-------------cEEEccCCccccccCcc
Q 035555 445 KCRRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNL-------------ECLAISFCTNLRQLPQG 509 (767)
Q Consensus 445 ~~L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L-------------~~L~L~~~~~l~~lp~~ 509 (767)
+.|+.++++ .++.+|..++++++|++|++++|...+.+|..++++.+| ++|++++|. +..+|..
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~~ 89 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPEL 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCSC
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCCC
Confidence 456676665 567788888888888888888887445778777777764 788888877 6666652
Q ss_pred cccCcCCcEeeCCCCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcC-CCCCCeeeeCCCCCCChhhhHHhh
Q 035555 510 IGKLRKLMYLDNDYTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRL-ILLRECRIHGLGDVSDVGEARRAE 588 (767)
Q Consensus 510 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l-~~L~~L~i~~l~~~~~~~~~~~~~ 588 (767)
.++|++|++++| .+..+|.. +++|+.|++..+.... +..+ ++|+.|.+++.. +... + .
T Consensus 90 ---~~~L~~L~l~~n-~l~~lp~~---~~~L~~L~l~~n~l~~--------l~~~~~~L~~L~L~~n~-l~~l----p-~ 148 (454)
T 1jl5_A 90 ---PPHLESLVASCN-SLTELPEL---PQSLKSLLVDNNNLKA--------LSDLPPLLEYLGVSNNQ-LEKL----P-E 148 (454)
T ss_dssp ---CTTCSEEECCSS-CCSSCCCC---CTTCCEEECCSSCCSC--------CCSCCTTCCEEECCSSC-CSSC----C-C
T ss_pred ---cCCCCEEEccCC-cCCccccc---cCCCcEEECCCCccCc--------ccCCCCCCCEEECcCCC-CCCC----c-c
Confidence 367888888777 55556643 2556666544332221 1112 456666666532 1111 1 3
Q ss_pred ccCCCCcCceEEEecCCccCCccccCCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCC-----
Q 035555 589 LEKKKNLFDLELRFDCNVIPKNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVE----- 663 (767)
Q Consensus 589 l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~----- 663 (767)
+.++++|+.|++++|....+|..+ .+|++|++++| .++.+|.++.+++|++|++++|. ++.++.......
T Consensus 149 ~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~ 223 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN-QLEELPELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAG 223 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECC
T ss_pred cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC-cCCcCccccCCCCCCEEECCCCc-CCcCCCCcCcccEEECc
Confidence 666777777777777766666532 46777777766 34446666777777777777665 332221100000
Q ss_pred --CCCCCccccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCccccCCCcCCCCCCCCcEEEecCCC
Q 035555 664 --SDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGC 740 (767)
Q Consensus 664 --~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c 740 (767)
.......+..+++|+.|++++| .++.++. .+++|+.|++++| .++.+|.. +++|+.|++ ++|
T Consensus 224 ~n~l~~lp~~~~l~~L~~L~l~~N-~l~~l~~---------~~~~L~~L~l~~N-~l~~l~~~---~~~L~~L~l-s~N 287 (454)
T 1jl5_A 224 NNILEELPELQNLPFLTTIYADNN-LLKTLPD---------LPPSLEALNVRDN-YLTDLPEL---PQSLTFLDV-SEN 287 (454)
T ss_dssp SSCCSSCCCCTTCTTCCEEECCSS-CCSSCCS---------CCTTCCEEECCSS-CCSCCCCC---CTTCCEEEC-CSS
T ss_pred CCcCCcccccCCCCCCCEEECCCC-cCCcccc---------cccccCEEECCCC-cccccCcc---cCcCCEEEC-cCC
Confidence 0000011346677777777776 3433321 2467777777777 56666653 366777777 554
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.69 E-value=2.8e-18 Score=179.31 Aligned_cols=269 Identities=12% Similarity=0.017 Sum_probs=188.8
Q ss_pred ccCceeeeeccC--CCcccc-cccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcE
Q 035555 442 KLIKCRRWRCDN--YIKEIP-TNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMY 518 (767)
Q Consensus 442 ~~~~~L~~l~l~--~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~ 518 (767)
..++.|+.|+++ .+..++ ..|+++++|++|++++|. +...++ +..+++|++|++++|. +..+| .+++|++
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~----~~~~L~~ 103 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIET 103 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSSE-EEEEE----ECTTCCE
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCCc-ccccc----CCCCcCE
Confidence 356688999988 455554 679999999999999999 766665 8999999999999998 66665 3589999
Q ss_pred eeCCCCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhc-cCCCCcCc
Q 035555 519 LDNDYTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAEL-EKKKNLFD 597 (767)
Q Consensus 519 L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l-~~~~~L~~ 597 (767)
|++++| .+..++.. .+++|+.|.+..+.... .....+..+++|+.|++++.. ........+ ..+++|+.
T Consensus 104 L~l~~n-~l~~~~~~--~~~~L~~L~l~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~----l~~~~~~~~~~~l~~L~~ 173 (317)
T 3o53_A 104 LHAANN-NISRVSCS--RGQGKKNIYLANNKITM---LRDLDEGCRSRVQYLDLKLNE----IDTVNFAELAASSDTLEH 173 (317)
T ss_dssp EECCSS-CCSEEEEC--CCSSCEEEECCSSCCCS---GGGBCTGGGSSEEEEECTTSC----CCEEEGGGGGGGTTTCCE
T ss_pred EECCCC-ccCCcCcc--ccCCCCEEECCCCCCCC---ccchhhhccCCCCEEECCCCC----CCcccHHHHhhccCcCCE
Confidence 999998 56666543 36778888765544432 222355667888888887632 112222333 46789999
Q ss_pred eEEEecCCccCCccccCCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCccc
Q 035555 598 LELRFDCNVIPKNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKL 677 (767)
Q Consensus 598 L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L 677 (767)
|++++|....+|.. ..+++|+.|+|++|......+.+..+++|++|++++|. ++.++..+ ..+++|
T Consensus 174 L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~------------~~l~~L 239 (317)
T 3o53_A 174 LNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKAL------------RFSQNL 239 (317)
T ss_dssp EECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTC------------CCCTTC
T ss_pred EECCCCcCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-ccchhhHh------------hcCCCC
Confidence 99999998777653 35899999999998544333457889999999999987 67766543 378999
Q ss_pred ceeeccCccccccCccCCccccccccCcccceEeeccCccccCCCcCCCCCCCCcEEEecCCCchhHHhh
Q 035555 678 RELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGCPIFRERY 747 (767)
Q Consensus 678 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c~~l~~~~ 747 (767)
+.|++++|+ +.. ...+..+..+++|+.|++.+|..++..+..-...+.+....- ..|..+...+
T Consensus 240 ~~L~l~~N~-~~~----~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~-~cc~~l~~~~ 303 (317)
T 3o53_A 240 EHFDLRGNG-FHC----GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA-YCCEDLPAPF 303 (317)
T ss_dssp CEEECTTCC-CBH----HHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETT-EEEBCCTTTH
T ss_pred CEEEccCCC-ccC----cCHHHHHhccccceEEECCCchhccCCchhccCCCceecccc-eeeccCChhH
Confidence 999999985 320 112234568899999999988877754422212222222222 3466654443
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.69 E-value=3.8e-16 Score=171.19 Aligned_cols=220 Identities=20% Similarity=0.122 Sum_probs=139.1
Q ss_pred ceeeeeccC--CCcccc-cccccCCcccEEeecCCccccccc-hhhcCCCCCcEEEccCCccccccCc-ccccCcCCcEe
Q 035555 445 KCRRWRCDN--YIKEIP-TNIEKLIHLKYLNLSSQKKIKRLP-ETLCELYNLECLAISFCTNLRQLPQ-GIGKLRKLMYL 519 (767)
Q Consensus 445 ~~L~~l~l~--~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L 519 (767)
+.++.|+++ .+..++ ..|.++++|++|+|++|. +..++ ..+.++++|++|+|++|. +..+|. .+..+++|++|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCcee
Confidence 567888887 455554 789999999999999999 66655 679999999999999998 777776 58899999999
Q ss_pred eCCCCCCcccccc-cCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCce
Q 035555 520 DNDYTNSLRYLPV-GIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDL 598 (767)
Q Consensus 520 ~l~~~~~l~~lp~-~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L 598 (767)
++++| .+..+|. .+..+++|+.|.+..+.... ..... .+.++++|+.|
T Consensus 142 ~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~--~i~~~----------------------------~~~~l~~L~~L 190 (440)
T 3zyj_A 142 WLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLS--YISEG----------------------------AFEGLSNLRYL 190 (440)
T ss_dssp ECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCC--EECTT----------------------------TTTTCSSCCEE
T ss_pred eCCCC-cccccCHHHhhhCcccCEeCCCCCCCcc--eeCcc----------------------------hhhcccccCee
Confidence 99999 5666664 57888888888654321111 11111 23344555555
Q ss_pred EEEecCCccCCccccCCCCccEEEEeccCCCCCCC-CCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCccc
Q 035555 599 ELRFDCNVIPKNWIMSLTNLRYLSLSLFKNCEQLL-PLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKL 677 (767)
Q Consensus 599 ~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L 677 (767)
++++|....+|. +..+++|+.|+|++|......+ .+..+++|++|+|++|. ++.++... +..+++|
T Consensus 191 ~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-----------~~~l~~L 257 (440)
T 3zyj_A 191 NLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNA-----------FDNLQSL 257 (440)
T ss_dssp ECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTS-----------STTCTTC
T ss_pred cCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc-eeEEChhh-----------hcCCCCC
Confidence 555555555553 4555666666666553222212 25556666666666654 34333221 1255666
Q ss_pred ceeeccCccccccCccCCccccccccCcccceEeeccCc
Q 035555 678 RELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCF 716 (767)
Q Consensus 678 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 716 (767)
+.|+|++| .++.++. ..+..+++|+.|+|++|+
T Consensus 258 ~~L~L~~N-~l~~~~~-----~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 258 VEINLAHN-NLTLLPH-----DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CEEECTTS-CCCCCCT-----TTTSSCTTCCEEECCSSC
T ss_pred CEEECCCC-CCCccCh-----hHhccccCCCEEEcCCCC
Confidence 66666665 3433322 233455666666666654
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.68 E-value=3.2e-16 Score=172.38 Aligned_cols=194 Identities=19% Similarity=0.129 Sum_probs=117.2
Q ss_pred ceeeeeccC--CCccc-ccccccCCcccEEeecCCccccccc-hhhcCCCCCcEEEccCCccccccCcc-cccCcCCcEe
Q 035555 445 KCRRWRCDN--YIKEI-PTNIEKLIHLKYLNLSSQKKIKRLP-ETLCELYNLECLAISFCTNLRQLPQG-IGKLRKLMYL 519 (767)
Q Consensus 445 ~~L~~l~l~--~~~~l-p~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~~L 519 (767)
+.++.|+++ .+..+ |..|+++++|++|+|++|. +..++ ..+.++++|++|+|++|. +..+|.. +..+++|++|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEE
Confidence 568888887 45555 5789999999999999999 66654 779999999999999998 7777764 8889999999
Q ss_pred eCCCCCCcccccc-cCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCce
Q 035555 520 DNDYTNSLRYLPV-GIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDL 598 (767)
Q Consensus 520 ~l~~~~~l~~lp~-~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L 598 (767)
++++| .+..+|. .+..+++|+.|.+..+.... ......+..+++|+.|++++.. +... ..+..+++|+.|
T Consensus 153 ~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~--~i~~~~~~~l~~L~~L~L~~n~-l~~~-----~~~~~l~~L~~L 223 (452)
T 3zyi_A 153 WLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLE--YISEGAFEGLFNLKYLNLGMCN-IKDM-----PNLTPLVGLEEL 223 (452)
T ss_dssp ECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCC--EECTTTTTTCTTCCEEECTTSC-CSSC-----CCCTTCTTCCEE
T ss_pred ECCCC-CcceeCHhHHhcCCcccEEeCCCCCCcc--ccChhhccCCCCCCEEECCCCc-cccc-----ccccccccccEE
Confidence 99999 5667664 57888888888654322111 1111223444445544444321 1110 123344444444
Q ss_pred EEEecCCccC-CccccCCCCccEEEEeccCCCCCCC-CCCCCCCCCeeeecCC
Q 035555 599 ELRFDCNVIP-KNWIMSLTNLRYLSLSLFKNCEQLL-PLGKLQSLEYLQIGGM 649 (767)
Q Consensus 599 ~l~~~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~ 649 (767)
+|++|.+... |..+..+++|+.|+|++|......+ .+..+++|++|+|++|
T Consensus 224 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp ECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence 4444444322 3334444444444444442221111 1344444444444444
No 65
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=1.2e-15 Score=156.82 Aligned_cols=200 Identities=21% Similarity=0.195 Sum_probs=137.8
Q ss_pred ccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCcccccccCcCCcCC
Q 035555 461 NIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPVGIRELIRL 540 (767)
Q Consensus 461 ~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L 540 (767)
.++++++|+.++++++. ++.+|..+. ++|++|++++|......|..+..+++|++|++++| .+..++.. +.+
T Consensus 5 ~~~~l~~l~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l--- 76 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRN-LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTL--- 76 (290)
T ss_dssp EEECSTTCCEEECTTSC-CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCC---
T ss_pred cccccCCccEEECCCCC-CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCC---
Confidence 46778888888888888 788886654 68888888888833334556788888888888887 44444321 222
Q ss_pred cccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCCccccCCCCccE
Q 035555 541 RRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPKNWIMSLTNLRY 620 (767)
Q Consensus 541 ~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~ 620 (767)
++|+.|++++|....+|..+..+++|+.
T Consensus 77 ----------------------------------------------------~~L~~L~Ls~N~l~~l~~~~~~l~~L~~ 104 (290)
T 1p9a_G 77 ----------------------------------------------------PVLGTLDLSHNQLQSLPLLGQTLPALTV 104 (290)
T ss_dssp ----------------------------------------------------TTCCEEECCSSCCSSCCCCTTTCTTCCE
T ss_pred ----------------------------------------------------CcCCEEECCCCcCCcCchhhccCCCCCE
Confidence 3344455555555556666667788888
Q ss_pred EEEeccCCCCCCCC--CCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCccCCccc
Q 035555 621 LSLSLFKNCEQLLP--LGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATK 698 (767)
Q Consensus 621 L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~ 698 (767)
|++++|. ++.+++ +..+++|++|++++|. ++.++... +..+++|+.|+|++| .++.++.
T Consensus 105 L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-----------~~~l~~L~~L~L~~N-~l~~l~~----- 165 (290)
T 1p9a_G 105 LDVSFNR-LTSLPLGALRGLGELQELYLKGNE-LKTLPPGL-----------LTPTPKLEKLSLANN-NLTELPA----- 165 (290)
T ss_dssp EECCSSC-CCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTT-----------TTTCTTCCEEECTTS-CCSCCCT-----
T ss_pred EECCCCc-CcccCHHHHcCCCCCCEEECCCCC-CCccChhh-----------cccccCCCEEECCCC-cCCccCH-----
Confidence 8888764 444442 6778888888888876 55444322 236788888888887 4554443
Q ss_pred cccccCcccceEeeccCccccCCCcCCCCCCCCcEEEecCCCc
Q 035555 699 GEIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGCP 741 (767)
Q Consensus 699 ~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c~ 741 (767)
+.+..+++|+.|++++| .++.+|..+..+++|+.|++ .++|
T Consensus 166 ~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L-~~Np 206 (290)
T 1p9a_G 166 GLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFL-HGNP 206 (290)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEEC-CSCC
T ss_pred HHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEe-CCCC
Confidence 24557888888999887 67888888888888888888 5433
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.66 E-value=1.6e-15 Score=166.04 Aligned_cols=176 Identities=20% Similarity=0.192 Sum_probs=79.1
Q ss_pred ceeeeeccC--CCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCC
Q 035555 445 KCRRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDND 522 (767)
Q Consensus 445 ~~L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~ 522 (767)
+.|++|+++ .+..+| .++++++|++|++++|. ++.+|..+ .+|++|++++|. +..+| .++.+++|++|+++
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCc-CcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECC
Confidence 345555544 234444 35555555555555555 44444322 355555555554 44454 35555555555555
Q ss_pred CCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEe
Q 035555 523 YTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRF 602 (767)
Q Consensus 523 ~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 602 (767)
+| .+..+|... .+|+.|.+..+... .+..+..+++|+.|.+++.. +.... ...++|+.|++++
T Consensus 204 ~N-~l~~l~~~~---~~L~~L~l~~n~l~-----~lp~~~~l~~L~~L~l~~N~-l~~l~-------~~~~~L~~L~l~~ 266 (454)
T 1jl5_A 204 NN-SLKKLPDLP---LSLESIVAGNNILE-----ELPELQNLPFLTTIYADNNL-LKTLP-------DLPPSLEALNVRD 266 (454)
T ss_dssp SS-CCSSCCCCC---TTCCEEECCSSCCS-----SCCCCTTCTTCCEEECCSSC-CSSCC-------SCCTTCCEEECCS
T ss_pred CC-cCCcCCCCc---CcccEEECcCCcCC-----cccccCCCCCCCEEECCCCc-CCccc-------ccccccCEEECCC
Confidence 55 333343322 23444433322221 12234455555555554421 11100 0124555555555
Q ss_pred cCCccCCccccCCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCC
Q 035555 603 DCNVIPKNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMH 650 (767)
Q Consensus 603 ~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 650 (767)
|....+|.+ +++|+.|++++|. +..++.+ .++|++|++++|.
T Consensus 267 N~l~~l~~~---~~~L~~L~ls~N~-l~~l~~~--~~~L~~L~l~~N~ 308 (454)
T 1jl5_A 267 NYLTDLPEL---PQSLTFLDVSENI-FSGLSEL--PPNLYYLNASSNE 308 (454)
T ss_dssp SCCSCCCCC---CTTCCEEECCSSC-CSEESCC--CTTCCEEECCSSC
T ss_pred CcccccCcc---cCcCCEEECcCCc-cCcccCc--CCcCCEEECcCCc
Confidence 555544442 2455555555543 2222221 1445555555443
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=2.4e-15 Score=153.71 Aligned_cols=87 Identities=21% Similarity=0.310 Sum_probs=65.4
Q ss_pred CCcccccccccCCcccEEeecCCccccccch-hhcCCCCCcEEEccCCccccccCc-ccccCcCCcEeeCCCCCCccccc
Q 035555 454 YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPE-TLCELYNLECLAISFCTNLRQLPQ-GIGKLRKLMYLDNDYTNSLRYLP 531 (767)
Q Consensus 454 ~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp 531 (767)
.+..+|..+. ++|++|++++|. ++.++. .+.++++|++|++++|. +..++. .+..+++|++|++++| .+..++
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~ 92 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN-PIQSLA 92 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTC-CCCEEC
T ss_pred CccccCCCCC--CCccEEECCCCc-ccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCC-ccCccC
Confidence 3456777664 579999999998 777664 78899999999999997 656554 6888999999999998 444444
Q ss_pred -ccCcCCcCCcccce
Q 035555 532 -VGIRELIRLRRVRK 545 (767)
Q Consensus 532 -~~~~~l~~L~~L~~ 545 (767)
..+..+++|+.|.+
T Consensus 93 ~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 93 LGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTTTTTCTTCCEEEC
T ss_pred hhhhcCCccccEEEC
Confidence 44666666666643
No 68
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=6e-16 Score=160.64 Aligned_cols=195 Identities=18% Similarity=0.219 Sum_probs=91.4
Q ss_pred cCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCcccccccCcCCcCCccc
Q 035555 464 KLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPVGIRELIRLRRV 543 (767)
Q Consensus 464 ~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 543 (767)
.+++|++|++++|. ++.+| .+..+++|++|++++|. +..+|. +..+++|++|++++| .+..++ .+..+++|+.|
T Consensus 39 ~l~~L~~L~l~~~~-i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCC-ccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEE
Confidence 44555555555555 55554 35555556666665554 444444 555555666665555 333332 33444444444
Q ss_pred ceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCCccccCCCCccEEEE
Q 035555 544 RKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPKNWIMSLTNLRYLSL 623 (767)
Q Consensus 544 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L 623 (767)
.+..+.... +.. +..+++|+.|++++|....++. +..+++|+.|++
T Consensus 113 ~l~~n~l~~-----~~~----------------------------l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l 158 (308)
T 1h6u_A 113 DLTSTQITD-----VTP----------------------------LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSI 158 (308)
T ss_dssp ECTTSCCCC-----CGG----------------------------GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEEC
T ss_pred ECCCCCCCC-----chh----------------------------hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEc
Confidence 322111110 111 2233344444444444433333 445555555555
Q ss_pred eccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCccCCcccccccc
Q 035555 624 SLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIII 703 (767)
Q Consensus 624 ~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 703 (767)
++| .+..++.+..+++|++|++++|. ++.++. +..+++|+.|++++| .+..+. .+..
T Consensus 159 ~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~-------------l~~l~~L~~L~L~~N-~l~~~~-------~l~~ 215 (308)
T 1h6u_A 159 GNA-QVSDLTPLANLSKLTTLKADDNK-ISDISP-------------LASLPNLIEVHLKNN-QISDVS-------PLAN 215 (308)
T ss_dssp CSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-------------GGGCTTCCEEECTTS-CCCBCG-------GGTT
T ss_pred cCC-cCCCChhhcCCCCCCEEECCCCc-cCcChh-------------hcCCCCCCEEEccCC-ccCccc-------cccC
Confidence 554 33334445555566666665554 332221 124555666666555 233222 1335
Q ss_pred CcccceEeeccCccccCCC
Q 035555 704 MPRLSCLIIFGCFKLKALP 722 (767)
Q Consensus 704 ~~~L~~L~l~~c~~l~~lp 722 (767)
+++|+.|++++| .++..|
T Consensus 216 l~~L~~L~l~~N-~i~~~~ 233 (308)
T 1h6u_A 216 TSNLFIVTLTNQ-TITNQP 233 (308)
T ss_dssp CTTCCEEEEEEE-EEECCC
T ss_pred CCCCCEEEccCC-eeecCC
Confidence 556666666655 344443
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.65 E-value=3.2e-17 Score=170.87 Aligned_cols=225 Identities=16% Similarity=0.121 Sum_probs=121.9
Q ss_pred ccccccccCCcccEEeecCCcccc--ccchhhc-------CCCCCcEEEccCCccccccCccc--ccCcCCcEeeCCCCC
Q 035555 457 EIPTNIEKLIHLKYLNLSSQKKIK--RLPETLC-------ELYNLECLAISFCTNLRQLPQGI--GKLRKLMYLDNDYTN 525 (767)
Q Consensus 457 ~lp~~~~~l~~L~~L~L~~~~~~~--~lp~~~~-------~l~~L~~L~L~~~~~l~~lp~~~--~~l~~L~~L~l~~~~ 525 (767)
.+|..+... |++|++++|. +. .+|..+. ++++|++|++++|.....+|..+ ..+++|++|++++|
T Consensus 56 ~~p~~~~~~--L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N- 131 (312)
T 1wwl_A 56 ADLGQFTDI--IKSLSLKRLT-VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV- 131 (312)
T ss_dssp CCCHHHHHH--HHHCCCCEEE-EEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-
T ss_pred ccHHHHHHH--Hhhccccccc-ccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-
Confidence 445544433 6666666666 32 3444444 56666666666666334566554 56666666666666
Q ss_pred CcccccccCcCC-----cCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEE
Q 035555 526 SLRYLPVGIREL-----IRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLEL 600 (767)
Q Consensus 526 ~l~~lp~~~~~l-----~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 600 (767)
.+..+|..++.+ ++|+.|++..+... . .....+.++++|+.|++
T Consensus 132 ~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~---~----------------------------~~~~~~~~l~~L~~L~L 180 (312)
T 1wwl_A 132 SWATRDAWLAELQQWLKPGLKVLSIAQAHSL---N----------------------------FSCEQVRVFPALSTLDL 180 (312)
T ss_dssp BCSSSSSHHHHHHTTCCTTCCEEEEESCSCC---C----------------------------CCTTTCCCCSSCCEEEC
T ss_pred CCcchhHHHHHHHHhhcCCCcEEEeeCCCCc---c----------------------------chHHHhccCCCCCEEEC
Confidence 444445444433 44444443332221 1 11123445556666666
Q ss_pred EecCCcc---CCccc--cCCCCccEEEEeccCCCCCCCC-----CCCCCCCCeeeecCCCCceEec-ccccCCCCCCCCc
Q 035555 601 RFDCNVI---PKNWI--MSLTNLRYLSLSLFKNCEQLLP-----LGKLQSLEYLQIGGMHGVKRVG-NEFLGVESDTNGS 669 (767)
Q Consensus 601 ~~~~~~~---~p~~~--~~l~~L~~L~L~~~~~~~~l~~-----l~~l~~L~~L~L~~~~~l~~~~-~~~~~~~~~~~~~ 669 (767)
++|.... .|..+ ..+++|++|++++|. ++.++. +..+++|++|++++|. ++..+ ...
T Consensus 181 s~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~---------- 248 (312)
T 1wwl_A 181 SDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPS---------- 248 (312)
T ss_dssp CSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSC----------
T ss_pred CCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhh----------
Confidence 6665421 22223 466777777777663 332221 2356777777777765 33222 110
Q ss_pred cccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCccccCCCcCCCCCCCCcEEEecCCCc
Q 035555 670 SVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHIWGGCP 741 (767)
Q Consensus 670 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l~~~c~ 741 (767)
...+++|+.|+|++| .++.++.. +. ++|+.|++++| .++.+|. +..+++|+.|++ .+++
T Consensus 249 -~~~l~~L~~L~Ls~N-~l~~ip~~------~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L-~~N~ 307 (312)
T 1wwl_A 249 -CDWPSQLNSLNLSFT-GLKQVPKG------LP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSL-KGNP 307 (312)
T ss_dssp -CCCCTTCCEEECTTS-CCSSCCSS------CC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEEC-TTCT
T ss_pred -hhhcCCCCEEECCCC-ccChhhhh------cc--CCceEEECCCC-CCCCChh-HhhCCCCCEEec-cCCC
Confidence 124567777777776 34443321 11 67777777777 5676666 666777777777 5543
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=6.9e-17 Score=168.30 Aligned_cols=216 Identities=18% Similarity=0.070 Sum_probs=150.6
Q ss_pred eeeeccCC--Cc--ccccccc-------cCCcccEEeecCCccccccchhh--cCCCCCcEEEccCCccccccCcccccC
Q 035555 447 RRWRCDNY--IK--EIPTNIE-------KLIHLKYLNLSSQKKIKRLPETL--CELYNLECLAISFCTNLRQLPQGIGKL 513 (767)
Q Consensus 447 L~~l~l~~--~~--~lp~~~~-------~l~~L~~L~L~~~~~~~~lp~~~--~~l~~L~~L~L~~~~~l~~lp~~~~~l 513 (767)
|+.|+++. +. .+|..+. ++++|++|++++|.....+|..+ ..+++|++|++++|. +..+|..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHH
Confidence 66677662 22 3565555 79999999999999444788776 899999999999998 66668878777
Q ss_pred -----cCCcEeeCCCCCCccccc-ccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHh
Q 035555 514 -----RKLMYLDNDYTNSLRYLP-VGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRA 587 (767)
Q Consensus 514 -----~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~ 587 (767)
++|++|++++| .+..++ ..++.+++|+.|++..+.... . .....
T Consensus 144 ~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~-------------------------~~~~~ 193 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELG----E-------------------------RGLIS 193 (312)
T ss_dssp HTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCH----H-------------------------HHHHH
T ss_pred HHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCc----c-------------------------hHHHH
Confidence 99999999999 555555 677888888877654332110 0 00111
Q ss_pred h--ccCCCCcCceEEEecCCccCC---c-cccCCCCccEEEEeccCCCCCC--CCCCCCCCCCeeeecCCCCceEecccc
Q 035555 588 E--LEKKKNLFDLELRFDCNVIPK---N-WIMSLTNLRYLSLSLFKNCEQL--LPLGKLQSLEYLQIGGMHGVKRVGNEF 659 (767)
Q Consensus 588 ~--l~~~~~L~~L~l~~~~~~~~p---~-~~~~l~~L~~L~L~~~~~~~~l--~~l~~l~~L~~L~L~~~~~l~~~~~~~ 659 (767)
. +..+++|+.|++++|....+| . .+..+++|+.|++++|...... +.+..+++|++|++++|. ++.++..
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~- 271 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKG- 271 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSS-
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhh-
Confidence 1 255667777777777765333 2 2236789999999988544433 345668999999999887 5544431
Q ss_pred cCCCCCCCCccccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCc
Q 035555 660 LGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCF 716 (767)
Q Consensus 660 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 716 (767)
-+++|+.|+|++| .++.++ .+..+++|+.|++++|+
T Consensus 272 -------------~~~~L~~L~Ls~N-~l~~~p-------~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 272 -------------LPAKLSVLDLSYN-RLDRNP-------SPDELPQVGNLSLKGNP 307 (312)
T ss_dssp -------------CCSEEEEEECCSS-CCCSCC-------CTTTSCEEEEEECTTCT
T ss_pred -------------ccCCceEEECCCC-CCCCCh-------hHhhCCCCCEEeccCCC
Confidence 1278999999988 455442 15578999999999984
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.63 E-value=2.7e-15 Score=154.10 Aligned_cols=199 Identities=20% Similarity=0.130 Sum_probs=129.3
Q ss_pred cCceeeeeccC--CCcccc-cccccCCcccEEeecCCcccccc-chhhcCCCCCcEEEccCCcccccc-CcccccCcCCc
Q 035555 443 LIKCRRWRCDN--YIKEIP-TNIEKLIHLKYLNLSSQKKIKRL-PETLCELYNLECLAISFCTNLRQL-PQGIGKLRKLM 517 (767)
Q Consensus 443 ~~~~L~~l~l~--~~~~lp-~~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L~ 517 (767)
..+.|+.|+++ .+..++ ..|+++++|++|++++|. ++.+ |..+.++++|++|++++|..+..+ |..+..+++|+
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~ 108 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence 34578888887 466666 568999999999999998 6665 778999999999999999756666 66789999999
Q ss_pred EeeCCCCCCcccc-cccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcC
Q 035555 518 YLDNDYTNSLRYL-PVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLF 596 (767)
Q Consensus 518 ~L~l~~~~~l~~l-p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~ 596 (767)
+|++++| .+..+ |..+..+++|+.|.+..+.... + ....+..+++|+
T Consensus 109 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------~------~~~~~~~l~~L~ 156 (285)
T 1ozn_A 109 TLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQA-------------------------L------PDDTFRDLGNLT 156 (285)
T ss_dssp EEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCC-------------------------C------CTTTTTTCTTCC
T ss_pred EEECCCC-cCCEECHhHhhCCcCCCEEECCCCcccc-------------------------c------CHhHhccCCCcc
Confidence 9999998 44444 4446666666666443221110 0 001234455566
Q ss_pred ceEEEecCCccCCc-cccCCCCccEEEEeccCCCCCCC-CCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCC
Q 035555 597 DLELRFDCNVIPKN-WIMSLTNLRYLSLSLFKNCEQLL-PLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAF 674 (767)
Q Consensus 597 ~L~l~~~~~~~~p~-~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 674 (767)
.|++++|....+|. ++..+++|+.|++++|......| .++.+++|++|++++|. ++.++... +..+
T Consensus 157 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-----------~~~l 224 (285)
T 1ozn_A 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEA-----------LAPL 224 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHH-----------HTTC
T ss_pred EEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCCHHH-----------cccC
Confidence 66666665554443 35566677777777664333222 35666677777776665 33333221 1256
Q ss_pred cccceeeccCcc
Q 035555 675 PKLRELKFSYME 686 (767)
Q Consensus 675 ~~L~~L~L~~~~ 686 (767)
++|+.|++++|+
T Consensus 225 ~~L~~L~l~~N~ 236 (285)
T 1ozn_A 225 RALQYLRLNDNP 236 (285)
T ss_dssp TTCCEEECCSSC
T ss_pred cccCEEeccCCC
Confidence 666777776664
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.62 E-value=8.3e-15 Score=149.11 Aligned_cols=104 Identities=27% Similarity=0.244 Sum_probs=50.8
Q ss_pred CcCceEEEecCCccCC-ccccCCCCccEEEEeccCCCCCCCC--CCCCCCCCeeeecCCCCceEecccccCCCCCCCCcc
Q 035555 594 NLFDLELRFDCNVIPK-NWIMSLTNLRYLSLSLFKNCEQLLP--LGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSS 670 (767)
Q Consensus 594 ~L~~L~l~~~~~~~~p-~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 670 (767)
+|+.|++++|....+| ..+..+++|++|+|++|. +..++. ++.+++|++|++++|. ++.++...
T Consensus 110 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~----------- 176 (270)
T 2o6q_A 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGA----------- 176 (270)
T ss_dssp SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTT-----------
T ss_pred CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCc-CcEeChhH-----------
Confidence 3444444444333332 234456666666666653 333333 5566666666666654 33333211
Q ss_pred ccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCc
Q 035555 671 VIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCF 716 (767)
Q Consensus 671 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 716 (767)
+..+++|+.|+|++| .++.++. ..+..+++|+.|++++|+
T Consensus 177 ~~~l~~L~~L~L~~N-~l~~~~~-----~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 177 FDKLTELKTLKLDNN-QLKRVPE-----GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTCTTCCEEECCSS-CCSCCCT-----TTTTTCTTCCEEECCSSC
T ss_pred hccCCCcCEEECCCC-cCCcCCH-----HHhccccCCCEEEecCCC
Confidence 124556666666655 3333221 123455566666666654
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=7.2e-16 Score=170.56 Aligned_cols=222 Identities=18% Similarity=0.119 Sum_probs=166.7
Q ss_pred ccchhhcCCC----CCcEEEccCCcccccc-CcccccCcCCcEeeCCCCCCcccccccCcCCcCCcccceeEecCccCCC
Q 035555 481 RLPETLCELY----NLECLAISFCTNLRQL-PQGIGKLRKLMYLDNDYTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRA 555 (767)
Q Consensus 481 ~lp~~~~~l~----~L~~L~L~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~ 555 (767)
.+|..+..+. +|++|+|++|. +..+ |..+..+++|++|++++| .+...+. ++.+++|+.|++..+...
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~---- 93 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQ---- 93 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEE----
T ss_pred hhHHHHHHhcccCCCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCC----
Confidence 4555555544 89999999998 5555 468999999999999999 5555544 888999999876544333
Q ss_pred CChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccC-CccccCCCCccEEEEeccCCCCCCCC
Q 035555 556 CSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIP-KNWIMSLTNLRYLSLSLFKNCEQLLP 634 (767)
Q Consensus 556 ~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~l~~ 634 (767)
.+...++|+.|.+++.. +... ....+++|+.|++++|..... |..+..+++|+.|+|++|......|.
T Consensus 94 ----~l~~~~~L~~L~L~~N~-l~~~------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (487)
T 3oja_A 94 ----ELLVGPSIETLHAANNN-ISRV------SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (487)
T ss_dssp ----EEEECTTCCEEECCSSC-CCCE------EECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG
T ss_pred ----CCCCCCCcCEEECcCCc-CCCC------CccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH
Confidence 34445788888887742 1211 123468899999999998755 55678899999999999865443333
Q ss_pred -CC-CCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCccCCccccccccCcccceEee
Q 035555 635 -LG-KLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLII 712 (767)
Q Consensus 635 -l~-~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l 712 (767)
+. .+++|++|+|++|. ++.++. ...+++|+.|+|++| .++.++. .+..+++|+.|++
T Consensus 163 ~l~~~l~~L~~L~Ls~N~-l~~~~~-------------~~~l~~L~~L~Ls~N-~l~~~~~------~~~~l~~L~~L~L 221 (487)
T 3oja_A 163 ELAASSDTLEHLNLQYNF-IYDVKG-------------QVVFAKLKTLDLSSN-KLAFMGP------EFQSAAGVTWISL 221 (487)
T ss_dssp GGGGGTTTCCEEECTTSC-CCEEEC-------------CCCCTTCCEEECCSS-CCCEECG------GGGGGTTCSEEEC
T ss_pred HHhhhCCcccEEecCCCc-cccccc-------------cccCCCCCEEECCCC-CCCCCCH------hHcCCCCccEEEe
Confidence 44 78999999999988 555532 126899999999998 4554332 3668999999999
Q ss_pred ccCccccCCCcCCCCCCCCcEEEecCCCchh
Q 035555 713 FGCFKLKALPDLLLQKTTLQKLHIWGGCPIF 743 (767)
Q Consensus 713 ~~c~~l~~lp~~~~~l~sL~~L~l~~~c~~l 743 (767)
++| .++.+|..+..+++|+.|++ .+|+-.
T Consensus 222 s~N-~l~~lp~~l~~l~~L~~L~l-~~N~l~ 250 (487)
T 3oja_A 222 RNN-KLVLIEKALRFSQNLEHFDL-RGNGFH 250 (487)
T ss_dssp TTS-CCCEECTTCCCCTTCCEEEC-TTCCBC
T ss_pred cCC-cCcccchhhccCCCCCEEEc-CCCCCc
Confidence 998 68889988999999999999 777643
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.61 E-value=1.7e-15 Score=157.23 Aligned_cols=188 Identities=20% Similarity=0.134 Sum_probs=134.0
Q ss_pred cCceeeeeccC--CCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEee
Q 035555 443 LIKCRRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLD 520 (767)
Q Consensus 443 ~~~~L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~ 520 (767)
.++.|+.|+++ .+..+| .+..+++|++|++++|. +..++. +.++++|++|++++|. +..+| .+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEE
Confidence 45678888887 455666 68999999999999998 888887 9999999999999998 77776 688999999999
Q ss_pred CCCCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEE
Q 035555 521 NDYTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLEL 600 (767)
Q Consensus 521 l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 600 (767)
+++| .+..++. +..+++|+.|.+..+.... +..+..+++|+.|.+++.. +... ..+..+++|+.|++
T Consensus 114 l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~-----~~~l~~l~~L~~L~l~~n~-l~~~-----~~l~~l~~L~~L~l 180 (308)
T 1h6u_A 114 LTST-QITDVTP-LAGLSNLQVLYLDLNQITN-----ISPLAGLTNLQYLSIGNAQ-VSDL-----TPLANLSKLTTLKA 180 (308)
T ss_dssp CTTS-CCCCCGG-GTTCTTCCEEECCSSCCCC-----CGGGGGCTTCCEEECCSSC-CCCC-----GGGTTCTTCCEEEC
T ss_pred CCCC-CCCCchh-hcCCCCCCEEECCCCccCc-----CccccCCCCccEEEccCCc-CCCC-----hhhcCCCCCCEEEC
Confidence 9999 6677764 7888888888765544332 2336666777777766532 1211 11556666777777
Q ss_pred EecCCccCCccccCCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCC
Q 035555 601 RFDCNVIPKNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMH 650 (767)
Q Consensus 601 ~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 650 (767)
++|....++. +..+++|+.|+|++| .+..++++..+++|++|++++|+
T Consensus 181 ~~n~l~~~~~-l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 181 DDNKISDISP-LASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp CSSCCCCCGG-GGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEEEE
T ss_pred CCCccCcChh-hcCCCCCCEEEccCC-ccCccccccCCCCCCEEEccCCe
Confidence 6666655554 556666777777665 33444456666677777776665
No 75
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.61 E-value=1.1e-13 Score=146.83 Aligned_cols=289 Identities=13% Similarity=0.122 Sum_probs=169.0
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccc-----hhhhh-----hhHHHHHHH
Q 035555 94 IDESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDD-----VKKIL-----RKEYGIARA 163 (767)
Q Consensus 94 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~-----~~~~F-----~~~~~i~~~ 163 (767)
..+..|+||++++++|.+++... +++.|+|++|+|||||++++++... ..... .....+.+.
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeecccccccCCCHHHHHHH
Confidence 34567999999999999988631 5899999999999999999987421 00000 011233444
Q ss_pred HHHHhhC----------------CCC--CccchHHHHHHHHHhcCC-CeEEEEEeCCCCcCh-------hhHHHHHHhhh
Q 035555 164 IIEALTY----------------SSS--NFVEFQSLMQHIQKHVAG-KKLLLVLDDVWNEDF-------YKWEQFYNCLK 217 (767)
Q Consensus 164 i~~~l~~----------------~~~--~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~-------~~~~~l~~~l~ 217 (767)
+.+.+.. ... ...+..++.+.+.+.... ++++||+||+++.+. ..+..+...+.
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~ 160 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD 160 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH
Confidence 4443321 000 123455566666665542 389999999976432 22333444333
Q ss_pred cCCCCcEEEEEcCchhH-Hhh---------h-cC-cceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhc
Q 035555 218 TCLHGSKILITTRKETV-ARI---------M-GS-ADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKC 285 (767)
Q Consensus 218 ~~~~gs~ilvTtR~~~v-~~~---------~-~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 285 (767)
. .++.++|+|++...+ ... . +. ...+.+.+|+.+|+.+++............ .+.+..|++.+
T Consensus 161 ~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~----~~~~~~i~~~t 235 (350)
T 2qen_A 161 S-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP----ENEIEEAVELL 235 (350)
T ss_dssp H-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHH
T ss_pred h-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHh
Confidence 3 257789999887543 221 1 11 247999999999999999875321111111 23578899999
Q ss_pred CCCcchHHHHHhHHhcCCCHHHHHH-HHhhhcccchhhhhhhhhhHH-hhcccCCHHHHHHHHHhccCCCCcccChHHHH
Q 035555 286 KGLPLVAKTIASLLRSKNTEKEWQN-ILESEIWEIEEVEKNLLAPLL-LSYNELPSKVKQCFTYCAIFPKNSKIWKDKLI 363 (767)
Q Consensus 286 ~g~PLai~~~~~~l~~~~~~~~w~~-~~~~~~~~~~~~~~~i~~~l~-~sy~~L~~~~k~~f~~~s~fp~~~~i~~~~li 363 (767)
+|+|+++..++..+....+...+.. ..+. ....+...+. +.+ + ++..+..+..+|. . .++...+.
T Consensus 236 gG~P~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~l~~-~-~~~~~~~l~~la~-g---~~~~~~l~ 302 (350)
T 2qen_A 236 DGIPGWLVVFGVEYLRNGDFGRAMKRTLEV-------AKGLIMGELEELRR-R-SPRYVDILRAIAL-G---YNRWSLIR 302 (350)
T ss_dssp TTCHHHHHHHHHHHHHHCCHHHHHHHHHHH-------HHHHHHHHHHHHHH-H-CHHHHHHHHHHHT-T---CCSHHHHH
T ss_pred CCCHHHHHHHHHHHhccccHhHHHHHHHHH-------HHHHHHHHHHHHHh-C-ChhHHHHHHHHHh-C---CCCHHHHH
Confidence 9999999999876533222222211 1110 0000111111 111 2 7888999988887 2 13444554
Q ss_pred HHHHHcCCccCCCCCcHHHHHHHHHHHHHhcCCCcccccCCCCCEEEEEe-ChHHHHHH
Q 035555 364 ELWMAQGFLNNKRSKEMEEIGEEYFNILASRSFFQDFERGYDGKIYQCKV-HDIVHDFA 421 (767)
Q Consensus 364 ~~w~a~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~m-Hdlv~~~a 421 (767)
....+.. - .. .......+++.|.+.+++..... .|.+ |.+++++.
T Consensus 303 ~~~~~~~-~----~~-~~~~~~~~l~~L~~~gli~~~~~-------~y~~~~p~~~~~~ 348 (350)
T 2qen_A 303 DYLAVKG-T----KI-PEPRLYALLENLKKMNWIVEEDN-------TYKIADPVVATVL 348 (350)
T ss_dssp HHHHHTT-C----CC-CHHHHHHHHHHHHHTTSEEEETT-------EEEESSHHHHHHH
T ss_pred HHHHHHh-C----CC-CHHHHHHHHHHHHhCCCEEecCC-------EEEEecHHHHHHH
Confidence 4332211 0 01 12456789999999999976521 2444 67777765
No 76
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.60 E-value=6.3e-15 Score=166.41 Aligned_cols=231 Identities=16% Similarity=0.006 Sum_probs=172.3
Q ss_pred EEEeecccccccccCceeeeeccC--CCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccC
Q 035555 430 LMVEILCGEEALKLIKCRRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLP 507 (767)
Q Consensus 430 ~~~~~~~~~~~~~~~~~L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp 507 (767)
+.+.......++..++.|++|+++ .++.+|. .+++|++|++++|. ++.+|. .+++|++|++++|. +..+|
T Consensus 66 L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp 137 (622)
T 3g06_A 66 LVIPDNNLTSLPALPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLP 137 (622)
T ss_dssp EEECSCCCSCCCCCCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCC
T ss_pred EEecCCCCCCCCCcCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCC
Confidence 344444455566678899999998 5667786 78999999999999 888887 67899999999998 88888
Q ss_pred cccccCcCCcEeeCCCCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHh
Q 035555 508 QGIGKLRKLMYLDNDYTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRA 587 (767)
Q Consensus 508 ~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~ 587 (767)
.. +++|++|++++| .+..+|.. +.+|+.|.+..+.... +. ..+++|+.|++++.. +....
T Consensus 138 ~~---l~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~L~~N~l~~-----l~--~~~~~L~~L~Ls~N~-l~~l~----- 197 (622)
T 3g06_A 138 VL---PPGLQELSVSDN-QLASLPAL---PSELCKLWAYNNQLTS-----LP--MLPSGLQELSVSDNQ-LASLP----- 197 (622)
T ss_dssp CC---CTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSCCSC-----CC--CCCTTCCEEECCSSC-CSCCC-----
T ss_pred CC---CCCCCEEECcCC-cCCCcCCc---cCCCCEEECCCCCCCC-----Cc--ccCCCCcEEECCCCC-CCCCC-----
Confidence 74 489999999999 67777754 3556666555444332 22 445778888887632 22111
Q ss_pred hccCCCCcCceEEEecCCccCCccccCCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCC
Q 035555 588 ELEKKKNLFDLELRFDCNVIPKNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTN 667 (767)
Q Consensus 588 ~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 667 (767)
...++|+.|++++|....+|. .+++|+.|+|++| .++.+| ..+++|++|+|++|. ++.++.
T Consensus 198 --~~~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N~-L~~lp~---------- 258 (622)
T 3g06_A 198 --TLPSELYKLWAYNNRLTSLPA---LPSGLKELIVSGN-RLTSLP--VLPSELKELMVSGNR-LTSLPM---------- 258 (622)
T ss_dssp --CCCTTCCEEECCSSCCSSCCC---CCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCCC----------
T ss_pred --CccchhhEEECcCCcccccCC---CCCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCCC-CCcCCc----------
Confidence 134789999999999888886 3588999999987 556676 567999999999986 555443
Q ss_pred CccccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCcccc
Q 035555 668 GSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLK 719 (767)
Q Consensus 668 ~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 719 (767)
.+++|+.|+|++| .++.++ ..+..+++|+.|+|++|+...
T Consensus 259 -----~~~~L~~L~Ls~N-~L~~lp------~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 259 -----LPSGLLSLSVYRN-QLTRLP------ESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp -----CCTTCCEEECCSS-CCCSCC------GGGGGSCTTCEEECCSCCCCH
T ss_pred -----ccccCcEEeCCCC-CCCcCC------HHHhhccccCEEEecCCCCCC
Confidence 5678999999998 566443 246789999999999996433
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.59 E-value=1.6e-14 Score=147.07 Aligned_cols=190 Identities=24% Similarity=0.241 Sum_probs=113.4
Q ss_pred eeeccC--CCcccccccccCCcccEEeecCCccccccch-hhcCCCCCcEEEccCCccccccCcc-cccCcCCcEeeCCC
Q 035555 448 RWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPE-TLCELYNLECLAISFCTNLRQLPQG-IGKLRKLMYLDNDY 523 (767)
Q Consensus 448 ~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~~L~l~~ 523 (767)
+.++++ .++.+|..+. ..|++|++++|. ++.+|. .+.++++|++|++++|. +..+|.. +..+++|++|++++
T Consensus 19 ~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 19 NSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCS
T ss_pred CEEEccCCCCCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCC
Confidence 344444 4556665554 567777777777 665553 57777777777777776 5566654 46677777777777
Q ss_pred CCCcccccc-cCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEe
Q 035555 524 TNSLRYLPV-GIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRF 602 (767)
Q Consensus 524 ~~~l~~lp~-~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 602 (767)
| .+..+|. .+..+++|+.|.+..+.... .....+..+++|+.|++++
T Consensus 95 n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------------~~~~~~~~l~~L~~L~Ls~ 142 (270)
T 2o6q_A 95 N-KLQALPIGVFDQLVNLAELRLDRNQLKS-------------------------------LPPRVFDSLTKLTYLSLGY 142 (270)
T ss_dssp S-CCCCCCTTTTTTCSSCCEEECCSSCCCC-------------------------------CCTTTTTTCTTCCEEECCS
T ss_pred C-cCCcCCHhHcccccCCCEEECCCCccCe-------------------------------eCHHHhCcCcCCCEEECCC
Confidence 6 4455543 23455555555432211110 0012244556667777777
Q ss_pred cCCccCCcc-ccCCCCccEEEEeccCCCCCCCC--CCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccce
Q 035555 603 DCNVIPKNW-IMSLTNLRYLSLSLFKNCEQLLP--LGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRE 679 (767)
Q Consensus 603 ~~~~~~p~~-~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 679 (767)
|....+|.. +..+++|+.|+|++|. ++.++. +..+++|++|+|++|. ++.++... +..+++|+.
T Consensus 143 n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-----------~~~l~~L~~ 209 (270)
T 2o6q_A 143 NELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGA-----------FDSLEKLKM 209 (270)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC-CSCCCTTT-----------TTTCTTCCE
T ss_pred CcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCCc-CCcCCHHH-----------hccccCCCE
Confidence 766555543 5567778888887763 333443 6677778888887775 44444322 235677777
Q ss_pred eeccCcc
Q 035555 680 LKFSYME 686 (767)
Q Consensus 680 L~L~~~~ 686 (767)
|+|++|+
T Consensus 210 L~l~~N~ 216 (270)
T 2o6q_A 210 LQLQENP 216 (270)
T ss_dssp EECCSSC
T ss_pred EEecCCC
Confidence 8777764
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.59 E-value=1.4e-14 Score=148.78 Aligned_cols=193 Identities=18% Similarity=0.101 Sum_probs=143.6
Q ss_pred cCceeeeeccC--CCcccccccccCCcccEEeecCCcccccc-chhhcCCCCCcEEEccCCccccccCcccccCcCCcEe
Q 035555 443 LIKCRRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRL-PETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYL 519 (767)
Q Consensus 443 ~~~~L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L 519 (767)
.++.++.++++ .++.+|..+. +.|++|++++|. ++.+ |..+.++++|++|++++|. +..+|.. ..+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEE
T ss_pred ccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEE
Confidence 45667778877 5778887775 799999999999 6655 5779999999999999998 7777654 789999999
Q ss_pred eCCCCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceE
Q 035555 520 DNDYTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLE 599 (767)
Q Consensus 520 ~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 599 (767)
++++| .+..+|..+..+++|+.|.+..+.... .. ...+.++++|+.|+
T Consensus 83 ~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~---l~----------------------------~~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 83 DLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTS---LP----------------------------LGALRGLGELQELY 130 (290)
T ss_dssp ECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCC---CC----------------------------SSTTTTCTTCCEEE
T ss_pred ECCCC-cCCcCchhhccCCCCCEEECCCCcCcc---cC----------------------------HHHHcCCCCCCEEE
Confidence 99998 777888877778888777554332221 00 12345566777777
Q ss_pred EEecCCccCCc-cccCCCCccEEEEeccCCCCCCCC--CCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcc
Q 035555 600 LRFDCNVIPKN-WIMSLTNLRYLSLSLFKNCEQLLP--LGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPK 676 (767)
Q Consensus 600 l~~~~~~~~p~-~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 676 (767)
+++|....+|. .+..+++|+.|+|++|. ++.+|. +..+++|++|+|++|. ++.++..+. .+++
T Consensus 131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~------------~~~~ 196 (290)
T 1p9a_G 131 LKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF------------GSHL 196 (290)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT------------TTCC
T ss_pred CCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCc-CCccChhhc------------cccc
Confidence 77777765554 34578899999998874 455654 5678999999998887 666655433 5678
Q ss_pred cceeeccCcc
Q 035555 677 LRELKFSYME 686 (767)
Q Consensus 677 L~~L~L~~~~ 686 (767)
|+.|+|++|+
T Consensus 197 L~~l~L~~Np 206 (290)
T 1p9a_G 197 LPFAFLHGNP 206 (290)
T ss_dssp CSEEECCSCC
T ss_pred CCeEEeCCCC
Confidence 8899998875
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=1.4e-16 Score=168.22 Aligned_cols=211 Identities=13% Similarity=0.032 Sum_probs=121.9
Q ss_pred ccccccC--CcccEEeecCCccccccchhhcCCCCCcEEEccCCccccc-cCcccccCcCCcEeeCCCCCCcccccccCc
Q 035555 459 PTNIEKL--IHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQ-LPQGIGKLRKLMYLDNDYTNSLRYLPVGIR 535 (767)
Q Consensus 459 p~~~~~l--~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~-lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~ 535 (767)
|..+..+ +.+++|++++|. +...+..+.++++|++|++++|..... +|..+..+++|++|++++|......|..++
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~ 139 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA 139 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT
T ss_pred HHHHHhhhhccceEEEcCCcc-ccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh
Confidence 4445555 667777777766 544444455667777777777662222 555666677777777776632234445555
Q ss_pred CCcCCcccceeEecCccCCC-CChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCC-CcCceEEEecCC----ccCC
Q 035555 536 ELIRLRRVRKFVVGGGYDRA-CSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKK-NLFDLELRFDCN----VIPK 609 (767)
Q Consensus 536 ~l~~L~~L~~~~~~~~~~~~-~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~----~~~p 609 (767)
.+++|+.|++..+... .. .....+..+++|+.|+++++..+.. ......+..++ +|++|++++|.. ..+|
T Consensus 140 ~~~~L~~L~L~~~~~l--~~~~l~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~ 215 (336)
T 2ast_B 140 KNSNLVRLNLSGCSGF--SEFALQTLLSSCSRLDELNLSWCFDFTE--KHVQVAVAHVSETITQLNLSGYRKNLQKSDLS 215 (336)
T ss_dssp TCTTCSEEECTTCBSC--CHHHHHHHHHHCTTCCEEECCCCTTCCH--HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH
T ss_pred cCCCCCEEECCCCCCC--CHHHHHHHHhcCCCCCEEcCCCCCCcCh--HHHHHHHHhcccCCCEEEeCCCcccCCHHHHH
Confidence 5666666654433110 01 1122355666777777766533332 11234455666 777777777742 2345
Q ss_pred ccccCCCCccEEEEeccCCCC--CCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCc
Q 035555 610 NWIMSLTNLRYLSLSLFKNCE--QLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYM 685 (767)
Q Consensus 610 ~~~~~l~~L~~L~L~~~~~~~--~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 685 (767)
..+..+++|+.|++++|..++ .++.++.+++|++|++++|..+.... +. .+..+|+|+.|++++|
T Consensus 216 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~---------~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 216 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET--LL---------ELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG--GG---------GGGGCTTCCEEECTTS
T ss_pred HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH--HH---------HHhcCCCCCEEeccCc
Confidence 556677888888888776433 24456777888888888876322111 10 1236778888888776
No 80
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=1.5e-14 Score=153.11 Aligned_cols=230 Identities=17% Similarity=0.084 Sum_probs=145.9
Q ss_pred CCcccccccccCCcccEEeecCCccccccch-hhcCCCCCcEEEccCCccccccCc-ccccCcCCcEeeCCCCCCccccc
Q 035555 454 YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPE-TLCELYNLECLAISFCTNLRQLPQ-GIGKLRKLMYLDNDYTNSLRYLP 531 (767)
Q Consensus 454 ~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp 531 (767)
.++++|..+ ..++++|+|++|. ++.+|. .+.++++|++|+|++|..++.+|. .|.++++|.++...+++.+..++
T Consensus 20 ~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~ 96 (350)
T 4ay9_X 20 KVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 96 (350)
T ss_dssp TCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred CCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC
Confidence 577888776 3689999999999 889885 589999999999999996677776 46788888765544433677775
Q ss_pred -ccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCC-CCcCceEEEecCCccCC
Q 035555 532 -VGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKK-KNLFDLELRFDCNVIPK 609 (767)
Q Consensus 532 -~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~p 609 (767)
..++.+++|+.|.+..+....... .......++..+.+.....+.... ...+..+ ..++.|++++|.+..+|
T Consensus 97 ~~~f~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~l~~l~l~~~~~i~~l~---~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNTGIKHLPD---VHKIHSLQKVLLDIQDNINIHTIE---RNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp TTSBCCCTTCCEEEEEEECCSSCCC---CTTCCBSSCEEEEEESCTTCCEEC---TTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred chhhhhccccccccccccccccCCc---hhhcccchhhhhhhcccccccccc---ccchhhcchhhhhhccccccccCCC
Confidence 457889999999887776553111 111222233344544432222111 1122222 34666777777766666
Q ss_pred ccccCCCCccEEEEeccCCCCCCCC--CCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccc
Q 035555 610 NWIMSLTNLRYLSLSLFKNCEQLLP--LGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEE 687 (767)
Q Consensus 610 ~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 687 (767)
.......+|+.|.+.+++.++.+|. +..+++|++|+|++|. ++.++.. .|.+|+.|.+.++.+
T Consensus 171 ~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~--------------~~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSY--------------GLENLKKLRARSTYN 235 (350)
T ss_dssp TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSS--------------SCTTCCEEECTTCTT
T ss_pred hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChh--------------hhccchHhhhccCCC
Confidence 6555566677777776666666664 5667777777777665 5554431 445555665555555
Q ss_pred cccCccCCccccccccCcccceEeecc
Q 035555 688 LEEWDFGTATKGEIIIMPRLSCLIIFG 714 (767)
Q Consensus 688 l~~~~~~~~~~~~~~~~~~L~~L~l~~ 714 (767)
++.++. +..+++|+.+++.+
T Consensus 236 l~~lP~-------l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 236 LKKLPT-------LEKLVALMEASLTY 255 (350)
T ss_dssp CCCCCC-------TTTCCSCCEEECSC
T ss_pred cCcCCC-------chhCcChhhCcCCC
Confidence 555442 33566777776654
No 81
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.58 E-value=3.1e-14 Score=154.66 Aligned_cols=290 Identities=13% Similarity=0.050 Sum_probs=169.8
Q ss_pred CCccccchhHHHHHHHHH-hcCCCCCCCCCEEEEE--EccCCChHHHHHHHHHcccchhh-----hh-----h-----hH
Q 035555 96 ESEIFGREKEKSELVNRL-LCESSKEQKGPCVISL--VGMGGIGKTTLAQFAYNNDDVKK-----IL-----R-----KE 157 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~~v~I--~G~gGiGKTtLa~~v~~~~~~~~-----~F-----~-----~~ 157 (767)
+..++||++++++|.+.+ .....+.....+.+.| +|++|+||||||+++++...... .+ . ..
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 467999999999999988 4321100013456767 99999999999999987422110 11 1 15
Q ss_pred HHHHHHHHHHhhCCCCC-ccchHHHHHHHHHhcC--CCeEEEEEeCCCCcC------hhhHHHHHHhhhcC---C--CCc
Q 035555 158 YGIARAIIEALTYSSSN-FVEFQSLMQHIQKHVA--GKKLLLVLDDVWNED------FYKWEQFYNCLKTC---L--HGS 223 (767)
Q Consensus 158 ~~i~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~l~~~l~~~---~--~gs 223 (767)
..+...++..++..... ..+..++...+...+. +++++|||||+|... ...+..+...+... + .+.
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 67788888888654321 2234455566666654 679999999997532 23344344444322 2 344
Q ss_pred EEEEEcCchhHHhhhc---------CcceEecCCCChhHHHHHHHHhc---CCCCCCcchhhHHHHHHHHHhhcC-----
Q 035555 224 KILITTRKETVARIMG---------SADIISVNVLSETECWLVFESLG---FSGKSMEERENLEKIGREIIRKCK----- 286 (767)
Q Consensus 224 ~ilvTtR~~~v~~~~~---------~~~~~~l~~L~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~----- 286 (767)
.+|+||+...+...+. ....+.+++++.++++++|...+ +.... . ..+....|++.++
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~-~----~~~~~~~i~~~~~~~~~~ 255 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTV-W----EPRHLELISDVYGEDKGG 255 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTS-C----CHHHHHHHHHHHCGGGTS
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCC-C----ChHHHHHHHHHHHHhccC
Confidence 5787887655332211 12339999999999999997653 22111 1 1345777888888
Q ss_pred -CCcchHHHHHhHH-h-----cC--CCHHHHHHHHhhhcccchhhhhhhhhhHHhhcccCCHHHHHHHHHhccCC--CCc
Q 035555 287 -GLPLVAKTIASLL-R-----SK--NTEKEWQNILESEIWEIEEVEKNLLAPLLLSYNELPSKVKQCFTYCAIFP--KNS 355 (767)
Q Consensus 287 -g~PLai~~~~~~l-~-----~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~s~fp--~~~ 355 (767)
|.|..+..+.... . .. -+.+.+......... ...+.-++..||...+.++..++.+. .+.
T Consensus 256 ~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~ 326 (412)
T 1w5s_A 256 DGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGGME 326 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCS
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCC
Confidence 9997655544321 1 11 123333333221100 23345577889999999998888653 233
Q ss_pred ccChHHHHHHHHHcC--CccCCCCCcHHHHHHHHHHHHHhcCCCcccc
Q 035555 356 KIWKDKLIELWMAQG--FLNNKRSKEMEEIGEEYFNILASRSFFQDFE 401 (767)
Q Consensus 356 ~i~~~~li~~w~a~g--~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~ 401 (767)
.++...+...+.... .... . .........+++.|...+++....
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 327 WINAGLLRQRYEDASLTMYNV-K-PRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp SBCHHHHHHHHHHHHHHHSCC-C-CCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CccHHHHHHHHHHHHHhhcCC-C-CCCHHHHHHHHHHHHhCCCEEeec
Confidence 455555554442110 0110 0 111244667899999999997654
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.58 E-value=9.5e-15 Score=148.79 Aligned_cols=114 Identities=19% Similarity=0.093 Sum_probs=72.0
Q ss_pred CCCCcCceEEEecCCccCC-ccccCCCCccEEEEeccCCCCCCCC--CCCCCCCCeeeecCCCCceEecccccCCCCCCC
Q 035555 591 KKKNLFDLELRFDCNVIPK-NWIMSLTNLRYLSLSLFKNCEQLLP--LGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTN 667 (767)
Q Consensus 591 ~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 667 (767)
++++|+.|++++|....+| .++..+++|+.|++++|. ++.+++ ++.+++|++|++++|. ++.++...
T Consensus 131 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-------- 200 (272)
T 3rfs_A 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGV-------- 200 (272)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTT--------
T ss_pred cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCc-CCccCHHH--------
Confidence 3445555555555554443 335677888888888774 444444 6778888888888876 44443321
Q ss_pred CccccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCccccCCCcCCCCCCC
Q 035555 668 GSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLLLQKTT 730 (767)
Q Consensus 668 ~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~s 730 (767)
+..+++|+.|++++|+ + .+.+|.|+.|+++.|.....+|..+..++.
T Consensus 201 ---~~~l~~L~~L~l~~N~------~-------~~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 201 ---FDRLTSLQYIWLHDNP------W-------DCTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp ---TTTCTTCCEEECCSSC------B-------CCCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ---HhCCcCCCEEEccCCC------c-------cccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 2367888888888874 1 125677888888877555577766554433
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.56 E-value=1.6e-16 Score=171.10 Aligned_cols=196 Identities=15% Similarity=0.038 Sum_probs=109.8
Q ss_pred CCcccccccccCCcccEEeecCCccccc-----cchhhcCCCCCcEEEccCCc--cc-cccCccc-------ccCcCCcE
Q 035555 454 YIKEIPTNIEKLIHLKYLNLSSQKKIKR-----LPETLCELYNLECLAISFCT--NL-RQLPQGI-------GKLRKLMY 518 (767)
Q Consensus 454 ~~~~lp~~~~~l~~L~~L~L~~~~~~~~-----lp~~~~~l~~L~~L~L~~~~--~l-~~lp~~~-------~~l~~L~~ 518 (767)
.+..++..+..+++|++|+|++|. ++. ++..+.++++|++|+|++|. .+ ..+|..+ ..+++|++
T Consensus 20 ~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~ 98 (386)
T 2ca6_A 20 DEKSVFAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 98 (386)
T ss_dssp HHHTTSHHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHHHHHhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence 345677788888999999999987 543 34457788999999999874 11 2345444 67889999
Q ss_pred eeCCCCCCcc----cccccCcCCcCCcccceeEecCccCCCC-ChhhhhcC---------CCCCCeeeeCCCCCCChhhh
Q 035555 519 LDNDYTNSLR----YLPVGIRELIRLRRVRKFVVGGGYDRAC-SLESLKRL---------ILLRECRIHGLGDVSDVGEA 584 (767)
Q Consensus 519 L~l~~~~~l~----~lp~~~~~l~~L~~L~~~~~~~~~~~~~-~~~~l~~l---------~~L~~L~i~~l~~~~~~~~~ 584 (767)
|++++|.... .+|..+..+++|++|++..+........ ....+..+ ++|+.|.++++.--......
T Consensus 99 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 178 (386)
T 2ca6_A 99 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178 (386)
T ss_dssp EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred EECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence 9999883322 2555666677777776554433210000 01122333 56666666553211011111
Q ss_pred HHhhccCCCCcCceEEEecCCc------cCCccccCCCCccEEEEeccCCC----CCCC-CCCCCCCCCeeeecCCC
Q 035555 585 RRAELEKKKNLFDLELRFDCNV------IPKNWIMSLTNLRYLSLSLFKNC----EQLL-PLGKLQSLEYLQIGGMH 650 (767)
Q Consensus 585 ~~~~l~~~~~L~~L~l~~~~~~------~~p~~~~~l~~L~~L~L~~~~~~----~~l~-~l~~l~~L~~L~L~~~~ 650 (767)
....+..+++|+.|++++|... ..|.++..+++|+.|+|++|... ..+| .+..+++|++|+|++|.
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 2234445556666666666543 23334555666666666655321 2222 24455666666666654
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.54 E-value=3.5e-16 Score=165.06 Aligned_cols=250 Identities=17% Similarity=0.161 Sum_probs=175.4
Q ss_pred cccEEeecCCccccccchhhcCC--CCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCcc-c-ccccCcCCcCCcc
Q 035555 467 HLKYLNLSSQKKIKRLPETLCEL--YNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLR-Y-LPVGIRELIRLRR 542 (767)
Q Consensus 467 ~L~~L~L~~~~~~~~lp~~~~~l--~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~-~-lp~~~~~l~~L~~ 542 (767)
.++.|+++++. +. |..+..+ ++++.|++++|. +...+..+..+++|++|++++|. +. . +|..+..+++|+.
T Consensus 48 ~~~~l~l~~~~-~~--~~~~~~~~~~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKN-LH--PDVTGRLLSQGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCB-CC--HHHHHHHHHTTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSE
T ss_pred hheeecccccc-CC--HHHHHhhhhccceEEEcCCcc-ccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCE
Confidence 36788999887 44 5567777 899999999998 55555567789999999999994 43 3 6777888999999
Q ss_pred cceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEec-CCcc--CCccccCCC-Cc
Q 035555 543 VRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFD-CNVI--PKNWIMSLT-NL 618 (767)
Q Consensus 543 L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~--~p~~~~~l~-~L 618 (767)
|++..+... ...+..+..+++|+.|.++++..+.. ......+.++++|+.|++++| .... ++..+..++ +|
T Consensus 123 L~L~~~~l~---~~~~~~l~~~~~L~~L~L~~~~~l~~--~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 123 LSLEGLRLS---DPIVNTLAKNSNLVRLNLSGCSGFSE--FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp EECTTCBCC---HHHHHHHTTCTTCSEEECTTCBSCCH--HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred EeCcCcccC---HHHHHHHhcCCCCCEEECCCCCCCCH--HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 977655332 33456778899999999998754443 123445677899999999999 5542 566677889 99
Q ss_pred cEEEEeccC-CCC--CCCC-CCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCccC
Q 035555 619 RYLSLSLFK-NCE--QLLP-LGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFG 694 (767)
Q Consensus 619 ~~L~L~~~~-~~~--~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~ 694 (767)
++|+|++|. .++ .++. +..+++|++|++++|..++..... .+..+++|+.|++++|..+.....
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-----------~l~~l~~L~~L~l~~~~~~~~~~~- 265 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-----------EFFQLNYLQHLSLSRCYDIIPETL- 265 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-----------GGGGCTTCCEEECTTCTTCCGGGG-
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-----------HHhCCCCCCEeeCCCCCCCCHHHH-
Confidence 999999985 232 2332 467899999999998754322111 134789999999999864332211
Q ss_pred CccccccccCcccceEeeccCccccCCCc-CCCCC-CCCcEEEecCCCchhHHhhcc
Q 035555 695 TATKGEIIIMPRLSCLIIFGCFKLKALPD-LLLQK-TTLQKLHIWGGCPIFRERYRE 749 (767)
Q Consensus 695 ~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~~~~l-~sL~~L~l~~~c~~l~~~~~~ 749 (767)
..+..+++|+.|++++| ++. .+..+ .+|..|++ +|+.++.....
T Consensus 266 ----~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l--~~n~l~~~~~~ 311 (336)
T 2ast_B 266 ----LELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQI--NCSHFTTIARP 311 (336)
T ss_dssp ----GGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEE--SCCCSCCTTCS
T ss_pred ----HHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEE--ecccCccccCC
Confidence 13567999999999998 332 22223 24667778 45555554443
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.54 E-value=2.3e-14 Score=143.02 Aligned_cols=198 Identities=15% Similarity=0.108 Sum_probs=132.7
Q ss_pred ceeeeeccC--CCccccc-ccccCCcccEEeecCCccccccch-hhcCCCCCcEEEccCCccccccCc-ccccCcCCcEe
Q 035555 445 KCRRWRCDN--YIKEIPT-NIEKLIHLKYLNLSSQKKIKRLPE-TLCELYNLECLAISFCTNLRQLPQ-GIGKLRKLMYL 519 (767)
Q Consensus 445 ~~L~~l~l~--~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L 519 (767)
+.|+.|+++ .++.+|. .|+.+++|++|++++|..++.+|. .+.++++|++|++++|+.+..+|. .+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 367788776 5667775 789999999999999965777764 688999999999998333777775 68899999999
Q ss_pred eCCCCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceE
Q 035555 520 DNDYTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLE 599 (767)
Q Consensus 520 ~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 599 (767)
++++| .+..+|. ++.+++|+. |+.|+
T Consensus 111 ~l~~n-~l~~lp~-~~~l~~L~~----------------------------------------------------L~~L~ 136 (239)
T 2xwt_C 111 GIFNT-GLKMFPD-LTKVYSTDI----------------------------------------------------FFILE 136 (239)
T ss_dssp EEEEE-CCCSCCC-CTTCCBCCS----------------------------------------------------EEEEE
T ss_pred eCCCC-CCccccc-ccccccccc----------------------------------------------------ccEEE
Confidence 99998 5556664 444444431 12333
Q ss_pred EEec-CCccCC-ccccCCCCcc-EEEEeccCCCCCCCC-CCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCC-
Q 035555 600 LRFD-CNVIPK-NWIMSLTNLR-YLSLSLFKNCEQLLP-LGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAF- 674 (767)
Q Consensus 600 l~~~-~~~~~p-~~~~~l~~L~-~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~- 674 (767)
+++| ....+| ..+..+++|+ .|++++|. ++.+|. ....++|++|++++|+.++.++...+ ..+
T Consensus 137 l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~-----------~~l~ 204 (239)
T 2xwt_C 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF-----------GGVY 204 (239)
T ss_dssp EESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEEEECTTCTTCCEECTTTT-----------TTCS
T ss_pred CCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCEEEcCCCCCcccCCHHHh-----------hccc
Confidence 3333 332222 3355677777 77777664 334443 22236788888887755666654332 256
Q ss_pred cccceeeccCccccccCccCCccccccccCcccceEeeccCcc
Q 035555 675 PKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFK 717 (767)
Q Consensus 675 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 717 (767)
++|+.|++++| .++.++.. .+++|+.|.+.++..
T Consensus 205 ~~L~~L~l~~N-~l~~l~~~--------~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 205 SGPSLLDVSQT-SVTALPSK--------GLEHLKELIARNTWT 238 (239)
T ss_dssp BCCSEEECTTC-CCCCCCCT--------TCTTCSEEECTTC--
T ss_pred cCCcEEECCCC-ccccCChh--------HhccCceeeccCccC
Confidence 78888888876 45544432 577888888887754
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.54 E-value=2.5e-14 Score=146.17 Aligned_cols=199 Identities=16% Similarity=0.073 Sum_probs=123.8
Q ss_pred ceeeeeccC--CCccccc-ccccCCcccEEeecCCccccccc-hhhcCCCCCcEEEccCCccccccC-cccccCcCCcEe
Q 035555 445 KCRRWRCDN--YIKEIPT-NIEKLIHLKYLNLSSQKKIKRLP-ETLCELYNLECLAISFCTNLRQLP-QGIGKLRKLMYL 519 (767)
Q Consensus 445 ~~L~~l~l~--~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L 519 (767)
+.|+.|+++ .+..++. .|.++++|++|++++|. ++.++ ..+.++++|++|++++|. +..++ ..+..+++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEE
Confidence 358888887 4666664 79999999999999998 77665 478999999999999998 55554 678999999999
Q ss_pred eCCCCCCcccccc-cCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcC-c
Q 035555 520 DNDYTNSLRYLPV-GIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLF-D 597 (767)
Q Consensus 520 ~l~~~~~l~~lp~-~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~-~ 597 (767)
++++| .+..++. .++.+++|+.|++..+.... ......+..+++|+.|++++.. +..........+..++.|. .
T Consensus 106 ~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 106 VAVET-NLASLENFPIGHLKTLKELNVAHNLIQS--FKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLS 181 (276)
T ss_dssp ECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCC--CCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEE
T ss_pred ECCCC-CccccCchhcccCCCCCEEECcCCccce--ecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhcccccee
Confidence 99998 5555554 57888888888665443332 1123455666666666665421 1111111111222222222 4
Q ss_pred eEEEecCCccCCccccCCCCccEEEEeccCCCCCCCC--CCCCCCCCeeeecCCC
Q 035555 598 LELRFDCNVIPKNWIMSLTNLRYLSLSLFKNCEQLLP--LGKLQSLEYLQIGGMH 650 (767)
Q Consensus 598 L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~ 650 (767)
|++++|....+|.......+|+.|+|++|. ++.+|. +..+++|++|++++|+
T Consensus 182 L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 182 LDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred eecCCCcccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCc
Confidence 555555554444433334455555555553 333332 3455555555555554
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=1.2e-13 Score=146.25 Aligned_cols=236 Identities=15% Similarity=0.109 Sum_probs=159.5
Q ss_pred cEEeecCCccccccchhhcCCCCCcEEEccCCccccccCc-ccccCcCCcEeeCCCCCCcccccc-cCcCCcCCccccee
Q 035555 469 KYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQ-GIGKLRKLMYLDNDYTNSLRYLPV-GIRELIRLRRVRKF 546 (767)
Q Consensus 469 ~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~~~ 546 (767)
+.++.+++. ++.+|..+ .+++++|+|++|. ++.+|. .|.++++|++|++++|.....+|. .+..+++|..+...
T Consensus 12 ~~v~C~~~~-Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESK-VTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTT-CCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCC-CCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 567888888 89999876 4689999999998 888987 479999999999999955566765 35777777655433
Q ss_pred EecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEec-CCccCC-ccccCC-CCccEEEE
Q 035555 547 VVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFD-CNVIPK-NWIMSL-TNLRYLSL 623 (767)
Q Consensus 547 ~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~p-~~~~~l-~~L~~L~L 623 (767)
....- .......+..+++|+.|.+.+..- ... ....+....++..|++..+ ....+| ..+..+ ..++.|++
T Consensus 88 ~~N~l--~~l~~~~f~~l~~L~~L~l~~n~l-~~~---~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L 161 (350)
T 4ay9_X 88 KANNL--LYINPEAFQNLPNLQYLLISNTGI-KHL---PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161 (350)
T ss_dssp EETTC--CEECTTSBCCCTTCCEEEEEEECC-SSC---CCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred cCCcc--cccCchhhhhcccccccccccccc-ccC---Cchhhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence 22111 122234466777787777765321 110 0112223345555666543 333333 333333 35777888
Q ss_pred eccCCCCCCCC-CCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCccCCccccccc
Q 035555 624 SLFKNCEQLLP-LGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEII 702 (767)
Q Consensus 624 ~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 702 (767)
++| .++.++. ....++|+.|++.++..++.++...+ ..+++|+.|+|++| .++.++..
T Consensus 162 ~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f-----------~~l~~L~~LdLs~N-~l~~lp~~-------- 220 (350)
T 4ay9_X 162 NKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVF-----------HGASGPVILDISRT-RIHSLPSY-------- 220 (350)
T ss_dssp CSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTT-----------TTEECCSEEECTTS-CCCCCCSS--------
T ss_pred ccc-cccCCChhhccccchhHHhhccCCcccCCCHHHh-----------ccCcccchhhcCCC-CcCccChh--------
Confidence 876 3444543 44566788888877666777765433 37899999999998 67776653
Q ss_pred cCcccceEeeccCccccCCCcCCCCCCCCcEEEe
Q 035555 703 IMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHI 736 (767)
Q Consensus 703 ~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l 736 (767)
.+.+|+.|.+.+|..++.+|. +..+++|+.+++
T Consensus 221 ~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l 253 (350)
T 4ay9_X 221 GLENLKKLRARSTYNLKKLPT-LEKLVALMEASL 253 (350)
T ss_dssp SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEEC
T ss_pred hhccchHhhhccCCCcCcCCC-chhCcChhhCcC
Confidence 578888999999999999995 778999999999
No 88
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.52 E-value=5e-13 Score=142.03 Aligned_cols=285 Identities=11% Similarity=0.104 Sum_probs=164.2
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchh------hhh-----hhHHHHHHH
Q 035555 95 DESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVK------KIL-----RKEYGIARA 163 (767)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~------~~F-----~~~~~i~~~ 163 (767)
.+..|+||+++++.|.+ +.. +++.|+|++|+|||+|++++.+..... ..+ .........
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHH
Confidence 45679999999999999 632 489999999999999999997642100 111 011122222
Q ss_pred HHHHhh--------------C------CCC---------CccchHHHHHHHHHhcCCCeEEEEEeCCCCcCh---hhH-H
Q 035555 164 IIEALT--------------Y------SSS---------NFVEFQSLMQHIQKHVAGKKLLLVLDDVWNEDF---YKW-E 210 (767)
Q Consensus 164 i~~~l~--------------~------~~~---------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~-~ 210 (767)
+.+.+. . ... .......+.+.+.+... ++++||+||+++.+. ..| .
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHH
Confidence 222211 0 000 12234556666655433 499999999976321 223 3
Q ss_pred HHHHhhhcCCCCcEEEEEcCchhH-Hhh---------h-cC-cceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHH
Q 035555 211 QFYNCLKTCLHGSKILITTRKETV-ARI---------M-GS-ADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIG 278 (767)
Q Consensus 211 ~l~~~l~~~~~gs~ilvTtR~~~v-~~~---------~-~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 278 (767)
.+...+.. .++.++|+|++.... ... . +. ...+.+.+|+.+++.+++......... .... .
T Consensus 160 ~l~~~~~~-~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~----~ 232 (357)
T 2fna_A 160 ALAYAYDN-LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI--DFKD----Y 232 (357)
T ss_dssp HHHHHHHH-CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC--CCCC----H
T ss_pred HHHHHHHc-CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC--CCCc----H
Confidence 34333332 346789999997653 211 1 11 257899999999999999875311011 0111 2
Q ss_pred HHHHhhcCCCcchHHHHHhHHhcCCCHHHHHHHHhhhcccchhhhhhhhhhHH-hhc--ccCCHHHHHHHHHhccCCCCc
Q 035555 279 REIIRKCKGLPLVAKTIASLLRSKNTEKEWQNILESEIWEIEEVEKNLLAPLL-LSY--NELPSKVKQCFTYCAIFPKNS 355 (767)
Q Consensus 279 ~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~-~sy--~~L~~~~k~~f~~~s~fp~~~ 355 (767)
..|++.++|+|+++..++..+....+...|..-.-. .....+...+. +.+ ..+++..+..+..+|. ..
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g~-- 303 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLE------YAKKLILKEFENFLHGREIARKRYLNIMRTLSK-CG-- 303 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHH------HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-CB--
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHH------HHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-CC--
Confidence 779999999999999998876543333333221100 00011111121 111 1688899999999998 22
Q ss_pred ccChHHHHHHHH-HcCCccCCCCCcHHHHHHHHHHHHHhcCCCcccccCCCCCEEEEE-eChHHHHHH
Q 035555 356 KIWKDKLIELWM-AQGFLNNKRSKEMEEIGEEYFNILASRSFFQDFERGYDGKIYQCK-VHDIVHDFA 421 (767)
Q Consensus 356 ~i~~~~li~~w~-a~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~-mHdlv~~~a 421 (767)
+...+....- ..|. .........+++.|++.+++..... .|. .|++++++.
T Consensus 304 --~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~~-------~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 --KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEGE-------KYCPSEPLISLAF 356 (357)
T ss_dssp --CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESSS-------CEEESSHHHHHHT
T ss_pred --CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecCC-------EEEecCHHHHHhh
Confidence 3444432211 1121 0112446788999999999976431 245 477887753
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.52 E-value=1.1e-13 Score=140.97 Aligned_cols=190 Identities=21% Similarity=0.210 Sum_probs=125.9
Q ss_pred ccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCccccccc-CcCCcC
Q 035555 461 NIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPVG-IRELIR 539 (767)
Q Consensus 461 ~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~ 539 (767)
.+..+.+|+.|++++|. ++.++. +..+++|++|++++|. +..++ .+..+++|++|++++| .+..++.. ++.++
T Consensus 36 ~~~~l~~L~~L~l~~~~-i~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~- 109 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSD-IKSVQG-IQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLT- 109 (272)
T ss_dssp CHHHHTTCCEEECTTSC-CCCCTT-GGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCT-
T ss_pred ccccccceeeeeeCCCC-cccccc-cccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCc-
Confidence 35567788888888887 666654 7778888888888887 55554 6777888888888877 44444332 23333
Q ss_pred CcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccC-CccccCCCCc
Q 035555 540 LRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIP-KNWIMSLTNL 618 (767)
Q Consensus 540 L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L 618 (767)
+|+.|++++|..... |..+..+++|
T Consensus 110 ------------------------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L 135 (272)
T 3rfs_A 110 ------------------------------------------------------NLKELVLVENQLQSLPDGVFDKLTNL 135 (272)
T ss_dssp ------------------------------------------------------TCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred ------------------------------------------------------CCCEEECCCCcCCccCHHHhccCCCC
Confidence 333333333333333 3446788999
Q ss_pred cEEEEeccCCCCCCCC--CCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCccCCc
Q 035555 619 RYLSLSLFKNCEQLLP--LGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTA 696 (767)
Q Consensus 619 ~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~ 696 (767)
++|++++|. ++.+++ ++.+++|++|++++|. ++.++... +..+++|+.|++++| .+..++
T Consensus 136 ~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-----------~~~l~~L~~L~L~~N-~l~~~~---- 197 (272)
T 3rfs_A 136 TYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGV-----------FDKLTQLKDLRLYQN-QLKSVP---- 197 (272)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-----------TTTCTTCCEEECCSS-CCSCCC----
T ss_pred CEEECCCCc-cCccCHHHhccCccCCEEECCCCC-cCccCHHH-----------hcCCccCCEEECCCC-cCCccC----
Confidence 999999884 455554 6789999999999886 55444322 237889999999888 444433
Q ss_pred cccccccCcccceEeeccCccccCCCcCCCCCCCCcEEEe
Q 035555 697 TKGEIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKLHI 736 (767)
Q Consensus 697 ~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L~l 736 (767)
+..+..+++|+.|++++|+.... +++|+.|++
T Consensus 198 -~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~ 229 (272)
T 3rfs_A 198 -DGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSE 229 (272)
T ss_dssp -TTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHH
T ss_pred -HHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHH
Confidence 23456789999999999854322 445566555
No 90
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.49 E-value=4.2e-16 Score=172.24 Aligned_cols=63 Identities=16% Similarity=0.041 Sum_probs=32.0
Q ss_pred cccceeeccCccccccCccCCccccccccCcccceEeeccCccccCC-----CcCCC-CCCCCcEEEecCCCc
Q 035555 675 PKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKAL-----PDLLL-QKTTLQKLHIWGGCP 741 (767)
Q Consensus 675 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-----p~~~~-~l~sL~~L~l~~~c~ 741 (767)
++|++|++++|. +....... .+..+..+++|+.|++++| .++.. ...+. ..++|+.|++ .+|.
T Consensus 313 ~~L~~L~L~~n~-l~~~~~~~-l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L-~~n~ 381 (461)
T 1z7x_W 313 CQLESLWVKSCS-FTAACCSH-FSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWL-ADCD 381 (461)
T ss_dssp CCCCEEECTTSC-CBGGGHHH-HHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEEC-TTSC
T ss_pred ccceeeEcCCCC-CchHHHHH-HHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEEC-CCCC
Confidence 466666666663 32211000 0112335577777777777 44421 12222 2567788888 6664
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.49 E-value=3.5e-14 Score=145.89 Aligned_cols=168 Identities=20% Similarity=0.214 Sum_probs=82.3
Q ss_pred cCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCcccccccCcCCcCCccc
Q 035555 464 KLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPVGIRELIRLRRV 543 (767)
Q Consensus 464 ~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 543 (767)
.+++|++|++++|. +..++. +..+++|++|++++|. +..++. +..+++|++|++++| .+..+| .+..+++|+.|
T Consensus 44 ~l~~L~~L~l~~~~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEE
T ss_pred hcCcccEEEccCCC-cccChh-HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCC-cCCCCh-hhccCCCCCEE
Confidence 34444444444444 444432 4444444444444444 333333 444444444444444 233322 13333444433
Q ss_pred ceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCCccccCCCCccEEEE
Q 035555 544 RKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPKNWIMSLTNLRYLSL 623 (767)
Q Consensus 544 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L 623 (767)
++..+... .+..+..+++|+.|.+++.. +... ..+..+++|+.|++++|.....+. +..+++|+.|++
T Consensus 118 ~L~~n~i~-----~~~~l~~l~~L~~L~l~~n~-l~~~-----~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L 185 (291)
T 1h6t_A 118 SLEHNGIS-----DINGLVHLPQLESLYLGNNK-ITDI-----TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYL 185 (291)
T ss_dssp ECTTSCCC-----CCGGGGGCTTCCEEECCSSC-CCCC-----GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred ECCCCcCC-----CChhhcCCCCCCEEEccCCc-CCcc-----hhhccCCCCCEEEccCCccccchh-hcCCCccCEEEC
Confidence 32222111 11233344444444444321 1111 234556667777777776655554 667777777777
Q ss_pred eccCCCCCCCCCCCCCCCCeeeecCCC
Q 035555 624 SLFKNCEQLLPLGKLQSLEYLQIGGMH 650 (767)
Q Consensus 624 ~~~~~~~~l~~l~~l~~L~~L~L~~~~ 650 (767)
++| .++.++.+..+++|++|++++|+
T Consensus 186 ~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 186 SKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred CCC-cCCCChhhccCCCCCEEECcCCc
Confidence 766 45556667777777777777765
No 92
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.47 E-value=1e-15 Score=169.13 Aligned_cols=281 Identities=17% Similarity=0.112 Sum_probs=169.3
Q ss_pred eeeeeccCC--Cc-----ccccccccCCcccEEeecCCccccc-cchhhc-----CCCCCcEEEccCCcccc----ccCc
Q 035555 446 CRRWRCDNY--IK-----EIPTNIEKLIHLKYLNLSSQKKIKR-LPETLC-----ELYNLECLAISFCTNLR----QLPQ 508 (767)
Q Consensus 446 ~L~~l~l~~--~~-----~lp~~~~~l~~L~~L~L~~~~~~~~-lp~~~~-----~l~~L~~L~L~~~~~l~----~lp~ 508 (767)
.|+.|+++. +. .+|..+..+++|++|++++|. ++. .+..+. .+++|++|++++|.... .++.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence 577777773 22 457778888899999999888 543 222222 35679999999887332 2455
Q ss_pred ccccCcCCcEeeCCCCCCcccc-cccCc-----CCcCCcccceeEecCccCCC-CChhhhhcCCCCCCeeeeCCCCCCCh
Q 035555 509 GIGKLRKLMYLDNDYTNSLRYL-PVGIR-----ELIRLRRVRKFVVGGGYDRA-CSLESLKRLILLRECRIHGLGDVSDV 581 (767)
Q Consensus 509 ~~~~l~~L~~L~l~~~~~l~~l-p~~~~-----~l~~L~~L~~~~~~~~~~~~-~~~~~l~~l~~L~~L~i~~l~~~~~~ 581 (767)
.+..+++|++|++++|. +... +..+. ..++|+.|++..+....... .....+..+++|+.|++++.. +...
T Consensus 165 ~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~ 242 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDV 242 (461)
T ss_dssp HHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHH
T ss_pred HHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChH
Confidence 66778899999998884 3321 12221 24577777665443332100 023456677888888887742 2211
Q ss_pred h-hhH-HhhccCCCCcCceEEEecCCcc-----CCccccCCCCccEEEEeccCCCCC----CCC--CCCCCCCCeeeecC
Q 035555 582 G-EAR-RAELEKKKNLFDLELRFDCNVI-----PKNWIMSLTNLRYLSLSLFKNCEQ----LLP--LGKLQSLEYLQIGG 648 (767)
Q Consensus 582 ~-~~~-~~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~l~~L~~L~L~~~~~~~~----l~~--l~~l~~L~~L~L~~ 648 (767)
. ... ......+++|+.|++++|.... ++..+..+++|++|++++|..... +.. ....++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 1 111 2223357889999998887754 566677788999999988742111 110 12346889999988
Q ss_pred CCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCccCCccccccc-cCcccceEeeccCcccc-----CCC
Q 035555 649 MHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEII-IMPRLSCLIIFGCFKLK-----ALP 722 (767)
Q Consensus 649 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~-----~lp 722 (767)
|. ++..+..... ..+..+++|++|+|++| .+.+........ .+. ..++|+.|++++| .++ .+|
T Consensus 323 n~-l~~~~~~~l~-------~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~-~l~~~~~~L~~L~L~~n-~i~~~~~~~l~ 391 (461)
T 1z7x_W 323 CS-FTAACCSHFS-------SVLAQNRFLLELQISNN-RLEDAGVRELCQ-GLGQPGSVLRVLWLADC-DVSDSSCSSLA 391 (461)
T ss_dssp SC-CBGGGHHHHH-------HHHHHCSSCCEEECCSS-BCHHHHHHHHHH-HHTSTTCCCCEEECTTS-CCCHHHHHHHH
T ss_pred CC-CchHHHHHHH-------HHHhhCCCccEEEccCC-ccccccHHHHHH-HHcCCCCceEEEECCCC-CCChhhHHHHH
Confidence 86 3322111000 01235688999999887 343321110000 011 2678999999988 455 577
Q ss_pred cCCCCCCCCcEEEecCCCc
Q 035555 723 DLLLQKTTLQKLHIWGGCP 741 (767)
Q Consensus 723 ~~~~~l~sL~~L~l~~~c~ 741 (767)
..+..+++|+.|++ ++|+
T Consensus 392 ~~l~~~~~L~~L~l-~~N~ 409 (461)
T 1z7x_W 392 ATLLANHSLRELDL-SNNC 409 (461)
T ss_dssp HHHHHCCCCCEEEC-CSSS
T ss_pred HHHHhCCCccEEEC-CCCC
Confidence 77777888999998 7775
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.47 E-value=8.5e-14 Score=144.70 Aligned_cols=200 Identities=17% Similarity=0.034 Sum_probs=94.7
Q ss_pred CcccEEeecCCccccccchhh--cCCCCCcEEEccCCccccccC----cccccCcCCcEeeCCCCCCccccc-ccCcCCc
Q 035555 466 IHLKYLNLSSQKKIKRLPETL--CELYNLECLAISFCTNLRQLP----QGIGKLRKLMYLDNDYTNSLRYLP-VGIRELI 538 (767)
Q Consensus 466 ~~L~~L~L~~~~~~~~lp~~~--~~l~~L~~L~L~~~~~l~~lp----~~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~ 538 (767)
++|++|++++|......|..+ .++++|++|++++|......| ..+..+++|++|++++| .+..++ ..++.++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccCC
Confidence 446666666666333444444 566666666666665322222 12345666666666666 333333 3445555
Q ss_pred CCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCCcc----ccC
Q 035555 539 RLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPKNW----IMS 614 (767)
Q Consensus 539 ~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~----~~~ 614 (767)
+|++|++..+.... .........+..+++|+.|++++|....+|.. +..
T Consensus 170 ~L~~L~Ls~N~l~~---------------------------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 170 ALTSLDLSDNPGLG---------------------------ERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp TCCEEECCSCTTCH---------------------------HHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred CCCEEECCCCCCcc---------------------------chhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 55555433222110 00000001123344555555555554433321 235
Q ss_pred CCCccEEEEeccCCCCCCC-CCCCC---CCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCcccccc
Q 035555 615 LTNLRYLSLSLFKNCEQLL-PLGKL---QSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEE 690 (767)
Q Consensus 615 l~~L~~L~L~~~~~~~~l~-~l~~l---~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 690 (767)
+++|++|+|++|......| .++.+ ++|++|++++|. ++.++.. .+++|+.|+|++| .++.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~--------------~~~~L~~L~Ls~N-~l~~ 286 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKG--------------LPAKLRVLDLSSN-RLNR 286 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSC--------------CCSCCSCEECCSC-CCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhh--------------hcCCCCEEECCCC-cCCC
Confidence 5666666666654333322 13332 566666666655 3333221 2256666666666 4554
Q ss_pred CccCCccccccccCcccceEeeccCc
Q 035555 691 WDFGTATKGEIIIMPRLSCLIIFGCF 716 (767)
Q Consensus 691 ~~~~~~~~~~~~~~~~L~~L~l~~c~ 716 (767)
++.. . .+++|+.|++++|+
T Consensus 287 ~~~~----~---~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 287 APQP----D---ELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCT----T---SCCCCSCEECSSTT
T ss_pred Cchh----h---hCCCccEEECcCCC
Confidence 4321 1 35666667766663
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.46 E-value=9.7e-14 Score=156.53 Aligned_cols=168 Identities=20% Similarity=0.213 Sum_probs=87.6
Q ss_pred cCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCcccccccCcCCcCCccc
Q 035555 464 KLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPVGIRELIRLRRV 543 (767)
Q Consensus 464 ~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 543 (767)
.+.+|++|++++|. +..+|. +..|++|+.|+|++|. +..+|. +..|++|++|++++| .+..+| .+..+++|+.|
T Consensus 41 ~L~~L~~L~l~~n~-i~~l~~-l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCCTT-GGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEE
T ss_pred cCCCCCEEECcCCC-CCCChH-HccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEE
Confidence 34444444444444 444332 4444444444444444 333332 444444444444444 333332 33344444444
Q ss_pred ceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCCccccCCCCccEEEE
Q 035555 544 RKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPKNWIMSLTNLRYLSL 623 (767)
Q Consensus 544 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L 623 (767)
.+..+... .+..+..+++|+.|.++++. +... ..+..+++|+.|+|+.|.+..++. +..+++|+.|+|
T Consensus 115 ~Ls~N~l~-----~l~~l~~l~~L~~L~Ls~N~-l~~l-----~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~L 182 (605)
T 1m9s_A 115 SLEHNGIS-----DINGLVHLPQLESLYLGNNK-ITDI-----TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYL 182 (605)
T ss_dssp ECTTSCCC-----CCGGGGGCTTCSEEECCSSC-CCCC-----GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred EecCCCCC-----CCccccCCCccCEEECCCCc-cCCc-----hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEEC
Confidence 33222211 12334444555555554421 1111 345667777777777777766555 677888888888
Q ss_pred eccCCCCCCCCCCCCCCCCeeeecCCC
Q 035555 624 SLFKNCEQLLPLGKLQSLEYLQIGGMH 650 (767)
Q Consensus 624 ~~~~~~~~l~~l~~l~~L~~L~L~~~~ 650 (767)
++| .+..++.+..+++|+.|+|++|+
T Consensus 183 s~N-~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 183 SKN-HISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CSS-CCCBCGGGTTCTTCSEEECCSEE
T ss_pred cCC-CCCCChHHccCCCCCEEEccCCc
Confidence 876 45556777788888888888776
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=8.2e-14 Score=144.84 Aligned_cols=197 Identities=14% Similarity=0.024 Sum_probs=131.6
Q ss_pred ceeeeeccCC--C-ccccccc--ccCCcccEEeecCCccccc-cc----hhhcCCCCCcEEEccCCccccccCcccccCc
Q 035555 445 KCRRWRCDNY--I-KEIPTNI--EKLIHLKYLNLSSQKKIKR-LP----ETLCELYNLECLAISFCTNLRQLPQGIGKLR 514 (767)
Q Consensus 445 ~~L~~l~l~~--~-~~lp~~~--~~l~~L~~L~L~~~~~~~~-lp----~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~ 514 (767)
+.|+.|+++. + ...|..+ +.+++|++|++++|. ++. .+ ..+..+++|++|++++|......|..++.++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3477777763 2 3456666 899999999999999 543 33 3356799999999999994444456789999
Q ss_pred CCcEeeCCCCCCccc--ccc--cCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhcc
Q 035555 515 KLMYLDNDYTNSLRY--LPV--GIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELE 590 (767)
Q Consensus 515 ~L~~L~l~~~~~l~~--lp~--~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~ 590 (767)
+|++|++++|..... ++. .++.+++|++|.+..+.. ..........+.
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l----------------------------~~l~~~~~~l~~ 221 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM----------------------------ETPTGVCAALAA 221 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC----------------------------CCHHHHHHHHHH
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC----------------------------CchHHHHHHHHh
Confidence 999999999943321 322 235566666664432211 111221122245
Q ss_pred CCCCcCceEEEecCCccC-CccccCC---CCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCC
Q 035555 591 KKKNLFDLELRFDCNVIP-KNWIMSL---TNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDT 666 (767)
Q Consensus 591 ~~~~L~~L~l~~~~~~~~-p~~~~~l---~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 666 (767)
++++|+.|++++|..... |..+..+ ++|++|+|++|. ++.+|.- -.++|++|+|++|. ++.++.
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~-~~~~L~~L~Ls~N~-l~~~~~--------- 289 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKG-LPAKLRVLDLSSNR-LNRAPQ--------- 289 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSC-CCSCCSCEECCSCC-CCSCCC---------
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhh-hcCCCCEEECCCCc-CCCCch---------
Confidence 667888888888877654 6556654 689999998874 4466652 24889999998887 444322
Q ss_pred CCccccCCcccceeeccCcc
Q 035555 667 NGSSVIAFPKLRELKFSYME 686 (767)
Q Consensus 667 ~~~~~~~~~~L~~L~L~~~~ 686 (767)
+..+++|+.|+|++|+
T Consensus 290 ----~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 290 ----PDELPEVDNLTLDGNP 305 (310)
T ss_dssp ----TTSCCCCSCEECSSTT
T ss_pred ----hhhCCCccEEECcCCC
Confidence 1377889999998884
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.45 E-value=5.5e-15 Score=159.02 Aligned_cols=226 Identities=17% Similarity=0.043 Sum_probs=159.7
Q ss_pred cCceeeeeccCCC--c-----ccccccccCCcccEEeecCCcccc----ccchh-------hcCCCCCcEEEccCCcccc
Q 035555 443 LIKCRRWRCDNYI--K-----EIPTNIEKLIHLKYLNLSSQKKIK----RLPET-------LCELYNLECLAISFCTNLR 504 (767)
Q Consensus 443 ~~~~L~~l~l~~~--~-----~lp~~~~~l~~L~~L~L~~~~~~~----~lp~~-------~~~l~~L~~L~L~~~~~l~ 504 (767)
.++.|+.|+++.. . .++..+..+++|++|+|++|. +. .+|.. +.++++|++|+|++|....
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccc-cCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 5677888888843 2 244567889999999999974 32 34444 4789999999999998433
Q ss_pred ----ccCcccccCcCCcEeeCCCCCCcc-----cccccCcCC---------cCCcccceeEecCccCCCCCh----hhhh
Q 035555 505 ----QLPQGIGKLRKLMYLDNDYTNSLR-----YLPVGIREL---------IRLRRVRKFVVGGGYDRACSL----ESLK 562 (767)
Q Consensus 505 ----~lp~~~~~l~~L~~L~l~~~~~l~-----~lp~~~~~l---------~~L~~L~~~~~~~~~~~~~~~----~~l~ 562 (767)
.+|..+..+++|++|++++|. +. .++..+..+ ++|++|.+..+.... ..+ ..+.
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~---~~~~~l~~~l~ 184 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN---GSMKEWAKTFQ 184 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG---GGHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc---HHHHHHHHHHH
Confidence 377788999999999999994 43 222333334 788888765554432 222 3567
Q ss_pred cCCCCCCeeeeCCCCCCChh--hhHHhhccCCCCcCceEEEecCC-----ccCCccccCCCCccEEEEeccCCCCC----
Q 035555 563 RLILLRECRIHGLGDVSDVG--EARRAELEKKKNLFDLELRFDCN-----VIPKNWIMSLTNLRYLSLSLFKNCEQ---- 631 (767)
Q Consensus 563 ~l~~L~~L~i~~l~~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~-----~~~p~~~~~l~~L~~L~L~~~~~~~~---- 631 (767)
.+++|+.|.++++. +...+ ......+..+++|+.|+|++|.. ..+|.++..+++|++|+|++|.....
T Consensus 185 ~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 185 SHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred hCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 88899999998752 22111 12233788899999999999987 45777888999999999999863322
Q ss_pred CCC-C--CCCCCCCeeeecCCCCceE-----ecccccCCCCCCCCccccCCcccceeeccCcc
Q 035555 632 LLP-L--GKLQSLEYLQIGGMHGVKR-----VGNEFLGVESDTNGSSVIAFPKLRELKFSYME 686 (767)
Q Consensus 632 l~~-l--~~l~~L~~L~L~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 686 (767)
++. + +.+++|++|+|++|. ++. ++..+. ..+|+|+.|++++|+
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~-----------~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVID-----------EKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHH-----------HHCTTCCEEECTTSB
T ss_pred HHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHH-----------hcCCCceEEEccCCc
Confidence 222 3 559999999999987 443 333221 257999999999984
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.45 E-value=3.6e-13 Score=150.12 Aligned_cols=190 Identities=16% Similarity=0.089 Sum_probs=116.8
Q ss_pred cccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCcccccccCcCCcCCccccee
Q 035555 467 HLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPVGIRELIRLRRVRKF 546 (767)
Q Consensus 467 ~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~ 546 (767)
+|++|++++|. ++.+|..+. ++|++|+|++|. +..+| ..+++|++|++++| .+..+|. +.. +|+.|.+.
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCC-CCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECC
Confidence 78888888877 666776553 678888888877 66777 44678888888877 5555665 443 45544332
Q ss_pred EecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCCccccCCCCccEEEEecc
Q 035555 547 VVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPKNWIMSLTNLRYLSLSLF 626 (767)
Q Consensus 547 ~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~ 626 (767)
.+.... ++. .+++|+.|++++|.+..+|. .+++|+.|+|++|
T Consensus 129 ~N~l~~-------------------------lp~----------~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 129 NNQLTM-------------------------LPE----------LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN 170 (571)
T ss_dssp SSCCSC-------------------------CCC----------CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS
T ss_pred CCcCCC-------------------------CCC----------cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC
Confidence 211110 000 23566777777777666665 5678888888877
Q ss_pred CCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCccCCccccccccCcc
Q 035555 627 KNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPR 706 (767)
Q Consensus 627 ~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 706 (767)
. ++.+|.+. ++|++|+|++|. ++.++. +.. . -....+.|+.|+|++| .++.++. .+..+++
T Consensus 171 ~-L~~lp~l~--~~L~~L~Ls~N~-L~~lp~-~~~--~-----L~~~~~~L~~L~Ls~N-~l~~lp~------~l~~l~~ 231 (571)
T 3cvr_A 171 Q-LTFLPELP--ESLEALDVSTNL-LESLPA-VPV--R-----NHHSEETEIFFRCREN-RITHIPE------NILSLDP 231 (571)
T ss_dssp C-CSCCCCCC--TTCCEEECCSSC-CSSCCC-CC---------------CCEEEECCSS-CCCCCCG------GGGGSCT
T ss_pred C-CCCcchhh--CCCCEEECcCCC-CCchhh-HHH--h-----hhcccccceEEecCCC-cceecCH------HHhcCCC
Confidence 4 44566644 888888888876 555554 221 0 0012233488888877 4554432 3456788
Q ss_pred cceEeeccCccccCCCcC
Q 035555 707 LSCLIIFGCFKLKALPDL 724 (767)
Q Consensus 707 L~~L~l~~c~~l~~lp~~ 724 (767)
|+.|+|++|+....+|..
T Consensus 232 L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 232 TCTIILEDNPLSSRIRES 249 (571)
T ss_dssp TEEEECCSSSCCHHHHHH
T ss_pred CCEEEeeCCcCCCcCHHH
Confidence 888888887544444433
No 98
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.44 E-value=3.8e-15 Score=170.09 Aligned_cols=279 Identities=13% Similarity=0.004 Sum_probs=174.0
Q ss_pred ccCceeeeeccCCCcc-------cccccccCCcccEEeecCCcccc-----ccchhhcCCCCCcEEEccCCccccccCcc
Q 035555 442 KLIKCRRWRCDNYIKE-------IPTNIEKLIHLKYLNLSSQKKIK-----RLPETLCELYNLECLAISFCTNLRQLPQG 509 (767)
Q Consensus 442 ~~~~~L~~l~l~~~~~-------lp~~~~~l~~L~~L~L~~~~~~~-----~lp~~~~~l~~L~~L~L~~~~~l~~lp~~ 509 (767)
..++.|+.|+++.... ++..+..+++|++|++++|. +. .++..+.++++|++|++++|. +..+|..
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~ 238 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGF 238 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHH
Confidence 4677888888875431 33445677888888888887 43 455556778888888888877 6667777
Q ss_pred cccCcCCcEeeCCCCCCc---ccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHH
Q 035555 510 IGKLRKLMYLDNDYTNSL---RYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARR 586 (767)
Q Consensus 510 ~~~l~~L~~L~l~~~~~l---~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~ 586 (767)
+..+++|++|+++.+... ...+..+..+++|+.|.+..... ......+..+++|+.|+++++. +.. ....
T Consensus 239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~----~~l~~~~~~~~~L~~L~Ls~~~-l~~--~~~~ 311 (592)
T 3ogk_B 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP----NEMPILFPFAAQIRKLDLLYAL-LET--EDHC 311 (592)
T ss_dssp HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT----TTGGGGGGGGGGCCEEEETTCC-CCH--HHHH
T ss_pred HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch----hHHHHHHhhcCCCcEEecCCCc-CCH--HHHH
Confidence 888888888888754222 22334455666666664432211 2233455677889999998765 322 2223
Q ss_pred hhccCCCCcCceEEEecCC-ccCCccccCCCCccEEEEec----------cCCCCC--CCC-CCCCCCCCeeeecCCCCc
Q 035555 587 AELEKKKNLFDLELRFDCN-VIPKNWIMSLTNLRYLSLSL----------FKNCEQ--LLP-LGKLQSLEYLQIGGMHGV 652 (767)
Q Consensus 587 ~~l~~~~~L~~L~l~~~~~-~~~p~~~~~l~~L~~L~L~~----------~~~~~~--l~~-l~~l~~L~~L~L~~~~~l 652 (767)
..+.++++|+.|+++.+-. ..++.....+++|++|+|++ |+.++. ++. ...+++|++|++..+. +
T Consensus 312 ~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-l 390 (592)
T 3ogk_B 312 TLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD-I 390 (592)
T ss_dssp HHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESC-C
T ss_pred HHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCC-c
Confidence 4467889999999983311 13334445789999999995 655542 222 2458999999995433 4
Q ss_pred eEecccccCCCCCCCCccccCCcccceeeccC---ccccccCccCCccccccccCcccceEeeccCcc-ccC--CCcCCC
Q 035555 653 KRVGNEFLGVESDTNGSSVIAFPKLRELKFSY---MEELEEWDFGTATKGEIIIMPRLSCLIIFGCFK-LKA--LPDLLL 726 (767)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~---~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~-l~~--lp~~~~ 726 (767)
+....... ...+++|+.|++++ +..++..+.....+..+..+++|+.|+++.|.. +.. +.....
T Consensus 391 ~~~~~~~l----------~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~ 460 (592)
T 3ogk_B 391 TNESLESI----------GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ 460 (592)
T ss_dssp CHHHHHHH----------HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH
T ss_pred cHHHHHHH----------HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH
Confidence 32211111 02488999999974 334544321100111244689999999988764 221 112223
Q ss_pred CCCCCcEEEecCCCc
Q 035555 727 QKTTLQKLHIWGGCP 741 (767)
Q Consensus 727 ~l~sL~~L~l~~~c~ 741 (767)
.+++|+.|++ .+|.
T Consensus 461 ~~~~L~~L~L-~~n~ 474 (592)
T 3ogk_B 461 YSPNVRWMLL-GYVG 474 (592)
T ss_dssp SCTTCCEEEE-CSCC
T ss_pred hCccceEeec-cCCC
Confidence 4789999999 7775
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.44 E-value=7.4e-15 Score=156.35 Aligned_cols=164 Identities=12% Similarity=0.044 Sum_probs=90.7
Q ss_pred cccccccCCcccEEeecCCccccccc-----hhhcCCC-CCcEEEccCCccccccCcccccC-----cCCcEeeCCCCCC
Q 035555 458 IPTNIEKLIHLKYLNLSSQKKIKRLP-----ETLCELY-NLECLAISFCTNLRQLPQGIGKL-----RKLMYLDNDYTNS 526 (767)
Q Consensus 458 lp~~~~~l~~L~~L~L~~~~~~~~lp-----~~~~~l~-~L~~L~L~~~~~l~~lp~~~~~l-----~~L~~L~l~~~~~ 526 (767)
+|..+....+|++|+|++|. ++..+ ..+.+++ +|++|+|++|......+..+..+ ++|++|++++| .
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~ 91 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-F 91 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-C
T ss_pred HHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-c
Confidence 44555555669999999999 76655 5677888 89999999998333334455554 89999999998 4
Q ss_pred ccccc-cc----CcCC-cCCcccceeEecCccCCCCChhh----hhcC-CCCCCeeeeCCCCCCChhhhHHhhccCCC-C
Q 035555 527 LRYLP-VG----IREL-IRLRRVRKFVVGGGYDRACSLES----LKRL-ILLRECRIHGLGDVSDVGEARRAELEKKK-N 594 (767)
Q Consensus 527 l~~lp-~~----~~~l-~~L~~L~~~~~~~~~~~~~~~~~----l~~l-~~L~~L~i~~l~~~~~~~~~~~~~l~~~~-~ 594 (767)
+...+ .. +..+ ++|+.|++..+.... ..... +..+ ++|+.|++++..--..........+...+ +
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~---~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 168 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWNDFSS---KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN 168 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG---SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTT
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCcCCc---HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcc
Confidence 54433 22 3333 567766655444332 22222 2222 35666666553211111122223333333 5
Q ss_pred cCceEEEecCCccCC-c----cccCC-CCccEEEEecc
Q 035555 595 LFDLELRFDCNVIPK-N----WIMSL-TNLRYLSLSLF 626 (767)
Q Consensus 595 L~~L~l~~~~~~~~p-~----~~~~l-~~L~~L~L~~~ 626 (767)
|+.|++++|.....+ . .+..+ ++|+.|+|++|
T Consensus 169 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 206 (362)
T 3goz_A 169 VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN 206 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred ccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence 666666655543222 1 12233 35666666555
No 100
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.41 E-value=4.6e-14 Score=161.10 Aligned_cols=276 Identities=17% Similarity=0.065 Sum_probs=158.2
Q ss_pred cCceeeeeccC--CCc-----ccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEcc-----------------
Q 035555 443 LIKCRRWRCDN--YIK-----EIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAIS----------------- 498 (767)
Q Consensus 443 ~~~~L~~l~l~--~~~-----~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~----------------- 498 (767)
.++.|+.|+++ .+. .++..+.++++|++|++++|. +..+|..+.++++|++|+++
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 34555555554 121 223334455666666666655 44455545555555555554
Q ss_pred ----------CCccccccCcccccCcCCcEeeCCCCCCccc--ccccCcCCcCCcccceeEecCccCCCCChh-hhhcCC
Q 035555 499 ----------FCTNLRQLPQGIGKLRKLMYLDNDYTNSLRY--LPVGIRELIRLRRVRKFVVGGGYDRACSLE-SLKRLI 565 (767)
Q Consensus 499 ----------~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~-~l~~l~ 565 (767)
++. ...+|..+..+++|++|++++|. +.. ++..+..+++|+.|.+. .... ...+. -...++
T Consensus 269 ~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~-~~~~---~~~l~~~~~~~~ 342 (592)
T 3ogk_B 269 PRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR-NVIG---DRGLEVLAQYCK 342 (592)
T ss_dssp CTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE-GGGH---HHHHHHHHHHCT
T ss_pred cccccccCccccc-hhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc-CccC---HHHHHHHHHhCC
Confidence 432 34556666677788888888774 322 11224667777777665 1111 11222 235667
Q ss_pred CCCCeeeeC----------CCCCCChhhhHHhhccCCCCcCceEEEecCCcc-CCcccc-CCCCccEEEEec---cCCCC
Q 035555 566 LLRECRIHG----------LGDVSDVGEARRAELEKKKNLFDLELRFDCNVI-PKNWIM-SLTNLRYLSLSL---FKNCE 630 (767)
Q Consensus 566 ~L~~L~i~~----------l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~~~~-~l~~L~~L~L~~---~~~~~ 630 (767)
+|+.|.+.+ +..++.. ........+++|++|+++.+.... .+..+. .+++|+.|++++ |+.++
T Consensus 343 ~L~~L~L~~g~~~~~~~~~~~~~~~~--~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~ 420 (592)
T 3ogk_B 343 QLKRLRIERGADEQGMEDEEGLVSQR--GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT 420 (592)
T ss_dssp TCCEEEEECCCCSSTTSSTTCCCCHH--HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS
T ss_pred CCCEEEeecCccccccccccCccCHH--HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc
Confidence 788888874 4333322 122234457888888886665431 222333 378899999884 44555
Q ss_pred CCCC-------CCCCCCCCeeeecCCCC-ceEecccccCCCCCCCCccccCCcccceeeccCccccccCccCCccccccc
Q 035555 631 QLLP-------LGKLQSLEYLQIGGMHG-VKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEII 702 (767)
Q Consensus 631 ~l~~-------l~~l~~L~~L~L~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 702 (767)
..|. +..+++|++|++++|.+ ++....... ...+|+|+.|+|++|. +.+... +..+.
T Consensus 421 ~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~----------~~~~~~L~~L~L~~n~-l~~~~~----~~~~~ 485 (592)
T 3ogk_B 421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI----------GQYSPNVRWMLLGYVG-ESDEGL----MEFSR 485 (592)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH----------HHSCTTCCEEEECSCC-SSHHHH----HHHHT
T ss_pred CchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH----------HHhCccceEeeccCCC-CCHHHH----HHHHh
Confidence 4331 34588899999976653 111111111 1258899999999874 432111 11234
Q ss_pred cCcccceEeeccCccccC--CCcCCCCCCCCcEEEecCCCchhHH
Q 035555 703 IMPRLSCLIIFGCFKLKA--LPDLLLQKTTLQKLHIWGGCPIFRE 745 (767)
Q Consensus 703 ~~~~L~~L~l~~c~~l~~--lp~~~~~l~sL~~L~l~~~c~~l~~ 745 (767)
.+++|+.|+|++|+ ++. ++.....+++|+.|++ ++|+ +++
T Consensus 486 ~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l-s~n~-it~ 527 (592)
T 3ogk_B 486 GCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWV-QGYR-ASM 527 (592)
T ss_dssp CCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEE-ESCB-CCT
T ss_pred cCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeEC-cCCc-CCH
Confidence 68999999999996 542 4544556899999999 8887 443
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.40 E-value=5.7e-13 Score=128.36 Aligned_cols=79 Identities=16% Similarity=0.111 Sum_probs=56.2
Q ss_pred cccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCcccccccCcCCcCCc
Q 035555 462 IEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPVGIRELIRLR 541 (767)
Q Consensus 462 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~ 541 (767)
.+.+++|++|++++|. ++.+| .+..+++|++|++++|. +..++ .+..+++|++|++++|......|..++.+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 3667788888888888 77777 58888888888888885 55554 677888888888888733223455555555555
Q ss_pred ccc
Q 035555 542 RVR 544 (767)
Q Consensus 542 ~L~ 544 (767)
.|.
T Consensus 116 ~L~ 118 (197)
T 4ezg_A 116 LLD 118 (197)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.39 E-value=2.8e-13 Score=136.87 Aligned_cols=162 Identities=19% Similarity=0.118 Sum_probs=112.8
Q ss_pred eeeeeccC--CCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCC
Q 035555 446 CRRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDY 523 (767)
Q Consensus 446 ~L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~ 523 (767)
.+..++++ .+..++ .+..+++|++|++++|. ++.+| .+..+++|++|++++|. +..+|. +..+++|++|++++
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCC
Confidence 33444444 345555 57788889999999887 77887 58888999999999887 777776 88888999999988
Q ss_pred CCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEec
Q 035555 524 TNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFD 603 (767)
Q Consensus 524 ~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 603 (767)
| .+..+|.... ++|+.|.+..+... .. ..+..+++|+.|++++|
T Consensus 95 N-~l~~l~~~~~--~~L~~L~L~~N~l~----------------------------~~-----~~l~~l~~L~~L~Ls~N 138 (263)
T 1xeu_A 95 N-RLKNLNGIPS--ACLSRLFLDNNELR----------------------------DT-----DSLIHLKNLEILSIRNN 138 (263)
T ss_dssp S-CCSCCTTCCC--SSCCEEECCSSCCS----------------------------BS-----GGGTTCTTCCEEECTTS
T ss_pred C-ccCCcCcccc--CcccEEEccCCccC----------------------------CC-----hhhcCcccccEEECCCC
Confidence 8 5555553222 44555433222111 10 13555667777777777
Q ss_pred CCccCCccccCCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCC
Q 035555 604 CNVIPKNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMH 650 (767)
Q Consensus 604 ~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 650 (767)
....+| .+..+++|+.|++++|. +..++.+..+++|++|++++|+
T Consensus 139 ~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 139 KLKSIV-MLGFLSKLEVLDLHGNE-ITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CCCBCG-GGGGCTTCCEEECTTSC-CCBCTTSTTCCCCCEEEEEEEE
T ss_pred cCCCCh-HHccCCCCCEEECCCCc-CcchHHhccCCCCCEEeCCCCc
Confidence 776665 57788889999998874 4445778888899999998876
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.39 E-value=1.9e-13 Score=154.25 Aligned_cols=188 Identities=20% Similarity=0.164 Sum_probs=115.6
Q ss_pred CCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCcccccccCcCCcCCcccc
Q 035555 465 LIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPVGIRELIRLRRVR 544 (767)
Q Consensus 465 l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~ 544 (767)
+..+..+++..+. +..++. +..|.+|+.|++++|. +..+| .+..|++|+.|++++| .+..++. +..+++|+.|.
T Consensus 20 l~~l~~l~l~~~~-i~~~~~-~~~L~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~ 93 (605)
T 1m9s_A 20 FAETIKDNLKKKS-VTDAVT-QNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHHTTCSC-TTSEEC-HHHHTTCCCCBCTTCC-CCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEE
T ss_pred HHHHHHHhccCCC-cccccc-hhcCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEE
Confidence 3445556666666 555443 5688999999999998 77777 6899999999999998 6666665 77788888886
Q ss_pred eeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCCccccCCCCccEEEEe
Q 035555 545 KFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPKNWIMSLTNLRYLSLS 624 (767)
Q Consensus 545 ~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~ 624 (767)
+..+.... +..+..+++|+.|.+++.. +... ..+..+++|+.|+|+.|.+..+ ..+..+++|+.|+|+
T Consensus 94 Ls~N~l~~-----l~~l~~l~~L~~L~Ls~N~-l~~l-----~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 94 LDENKIKD-----LSSLKDLKKLKSLSLEHNG-ISDI-----NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLE 161 (605)
T ss_dssp CCSSCCCC-----CTTSTTCTTCCEEECTTSC-CCCC-----GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECC
T ss_pred CcCCCCCC-----ChhhccCCCCCEEEecCCC-CCCC-----ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECc
Confidence 65443332 3355666666666665532 1111 2345556666666666655544 335556666666666
Q ss_pred ccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCc
Q 035555 625 LFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYM 685 (767)
Q Consensus 625 ~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 685 (767)
+|. +..++++..+++|+.|+|++|. ++.++. +..+++|+.|+|++|
T Consensus 162 ~N~-l~~~~~l~~l~~L~~L~Ls~N~-i~~l~~-------------l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 162 DNQ-ISDIVPLAGLTKLQNLYLSKNH-ISDLRA-------------LAGLKNLDVLELFSQ 207 (605)
T ss_dssp SSC-CCCCGGGTTCTTCCEEECCSSC-CCBCGG-------------GTTCTTCSEEECCSE
T ss_pred CCc-CCCchhhccCCCCCEEECcCCC-CCCChH-------------HccCCCCCEEEccCC
Confidence 553 3333335566666666666654 333211 225566666666655
No 104
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.38 E-value=1.5e-12 Score=149.79 Aligned_cols=246 Identities=14% Similarity=0.060 Sum_probs=145.4
Q ss_pred cccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCc--ccccccCcCCcC
Q 035555 462 IEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSL--RYLPVGIRELIR 539 (767)
Q Consensus 462 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l--~~lp~~~~~l~~ 539 (767)
+..+..|+.|++.+|. +..++. ..+..|+.+++..+. ....+ ....+++|+.|++++|... ...+..+..+.+
T Consensus 324 ~~~~~~L~~L~l~~~~-~~~~~~--~~l~~L~~l~l~~n~-~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~ 398 (635)
T 4g8a_A 324 FSYNFGWQHLELVNCK-FGQFPT--LKLKSLKRLTFTSNK-GGNAF-SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTIS 398 (635)
T ss_dssp GGSCCCCSEEEEESCE-ESSCCC--CBCTTCCEEEEESCC-SCCBC-CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSC
T ss_pred cccchhhhhhhccccc-ccCcCc--ccchhhhhccccccc-CCCCc-ccccccccccchhhccccccccccccchhhhhh
Confidence 4445566666666665 444432 235566666666554 22222 2334566666666655221 122233344445
Q ss_pred CcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCc-cCCccccCCCCc
Q 035555 540 LRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNV-IPKNWIMSLTNL 618 (767)
Q Consensus 540 L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~l~~L 618 (767)
|+.|......... ....+..+++|+.+.+....... ......+..+.+++.++++.|... ..|..+..+++|
T Consensus 399 L~~L~~~~~~~~~----~~~~~~~l~~L~~l~l~~~~~~~---~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L 471 (635)
T 4g8a_A 399 LKYLDLSFNGVIT----MSSNFLGLEQLEHLDFQHSNLKQ---MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 471 (635)
T ss_dssp CCEEECCSCSEEE----ECSCCTTCTTCCEEECTTSEEES---TTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred hhhhhcccccccc----ccccccccccccchhhhhccccc---cccccccccccccccccccccccccccccccccchhh
Confidence 5554433222111 11223334444444443321110 011124556777888888877764 345556678999
Q ss_pred cEEEEeccCCCCCC-C-CCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCccCCc
Q 035555 619 RYLSLSLFKNCEQL-L-PLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTA 696 (767)
Q Consensus 619 ~~L~L~~~~~~~~l-~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~ 696 (767)
+.|+|++|.....+ | .+..+++|++|+|++|. ++.++... +.++++|++|+|++| +++.++
T Consensus 472 ~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~-----------f~~l~~L~~L~Ls~N-~l~~l~---- 534 (635)
T 4g8a_A 472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTA-----------FNSLSSLQVLNMSHN-NFFSLD---- 534 (635)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTT-----------TTTCTTCCEEECTTS-CCCBCC----
T ss_pred hhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChHH-----------HcCCCCCCEEECCCC-cCCCCC----
Confidence 99999988655443 3 37889999999999986 66664432 237899999999998 455443
Q ss_pred cccccccCcccceEeeccCccccCC-CcCCCCC-CCCcEEEecCC
Q 035555 697 TKGEIIIMPRLSCLIIFGCFKLKAL-PDLLLQK-TTLQKLHIWGG 739 (767)
Q Consensus 697 ~~~~~~~~~~L~~L~l~~c~~l~~l-p~~~~~l-~sL~~L~l~~~ 739 (767)
+..+..+++|+.|+|++| .++.+ |..+..+ ++|+.|++ ++
T Consensus 535 -~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L-~~ 576 (635)
T 4g8a_A 535 -TFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNL-TQ 576 (635)
T ss_dssp -CGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEEC-TT
T ss_pred -hhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEe-eC
Confidence 335678899999999998 45544 5667776 68999999 54
No 105
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.36 E-value=7.4e-14 Score=159.51 Aligned_cols=274 Identities=16% Similarity=0.098 Sum_probs=153.1
Q ss_pred ccCceeeeeccCCCc-cc-----ccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCc--------------
Q 035555 442 KLIKCRRWRCDNYIK-EI-----PTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCT-------------- 501 (767)
Q Consensus 442 ~~~~~L~~l~l~~~~-~l-----p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~-------------- 501 (767)
..++.|+.|+++... .+ +.-+..+++|++|++++|..++.+|..+.++++|+.|+++.|.
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 355666666666442 11 1223445777777777764455566666666666666644331
Q ss_pred -----cc-----------cccCcccccCcCCcEeeCCCCCCccc--ccccCcCCcCCcccceeEecCccCCCCChhh-hh
Q 035555 502 -----NL-----------RQLPQGIGKLRKLMYLDNDYTNSLRY--LPVGIRELIRLRRVRKFVVGGGYDRACSLES-LK 562 (767)
Q Consensus 502 -----~l-----------~~lp~~~~~l~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~-l~ 562 (767)
.+ ..+|..+..+++|++|++++|. +.. ++.-+..+++|+.|.+..+ .. ...+.. ..
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~---~~~l~~l~~ 335 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IE---DAGLEVLAS 335 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GH---HHHHHHHHH
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cC---HHHHHHHHH
Confidence 11 1233333456777888887774 332 1122456677777766543 11 111222 23
Q ss_pred cCCCCCCeeeeCC--------CCCCChhhhHHhhccCCCCcCceEEEecCCcc-CCcccc-CCCCccEEEEe-----ccC
Q 035555 563 RLILLRECRIHGL--------GDVSDVGEARRAELEKKKNLFDLELRFDCNVI-PKNWIM-SLTNLRYLSLS-----LFK 627 (767)
Q Consensus 563 ~l~~L~~L~i~~l--------~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~~~~-~l~~L~~L~L~-----~~~ 627 (767)
.+++|+.|.+..+ ..++. ........++++|+.|.+..+.... .+..+. .+++|+.|+++ +|.
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~--~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTE--QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCH--HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred hCCCCCEEEEecCcccccccCCCCCH--HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence 4677888877442 22221 1112222346788888776665431 112222 57888899888 455
Q ss_pred CCCCCCC-------CCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCccCCccccc
Q 035555 628 NCEQLLP-------LGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGE 700 (767)
Q Consensus 628 ~~~~l~~-------l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~ 700 (767)
.++..|. +..+++|++|+|++ .++..+....+ ..+++|+.|+|++|. +.+... ..
T Consensus 414 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~----------~~~~~L~~L~L~~~~-i~~~~~-----~~ 475 (594)
T 2p1m_B 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIG----------TYAKKMEMLSVAFAG-DSDLGM-----HH 475 (594)
T ss_dssp TTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHH----------HHCTTCCEEEEESCC-SSHHHH-----HH
T ss_pred cccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHH----------HhchhccEeeccCCC-CcHHHH-----HH
Confidence 5554432 45678888888865 23222111110 137889999998884 322111 11
Q ss_pred c-ccCcccceEeeccCccccC--CCcCCCCCCCCcEEEecCCCch
Q 035555 701 I-IIMPRLSCLIIFGCFKLKA--LPDLLLQKTTLQKLHIWGGCPI 742 (767)
Q Consensus 701 ~-~~~~~L~~L~l~~c~~l~~--lp~~~~~l~sL~~L~l~~~c~~ 742 (767)
+ ..+++|+.|+|++|+. +. ++.....+++|+.|++ .+|+.
T Consensus 476 l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l-~~~~~ 518 (594)
T 2p1m_B 476 VLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWM-SSCSV 518 (594)
T ss_dssp HHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEE-ESSCC
T ss_pred HHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEee-eCCCC
Confidence 1 4589999999999964 32 2234455789999999 88975
No 106
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.36 E-value=3.1e-12 Score=128.44 Aligned_cols=92 Identities=22% Similarity=0.278 Sum_probs=60.2
Q ss_pred eeeccC--CCcccccccccCCcccEEeecCCccccccc-hhhcCCCCCcEEEccCCccccccC-cccccCcCCcEeeCCC
Q 035555 448 RWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLP-ETLCELYNLECLAISFCTNLRQLP-QGIGKLRKLMYLDNDY 523 (767)
Q Consensus 448 ~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~ 523 (767)
+.++++ .+..+|..+. ..|++|+|++|. +..++ ..+.++++|++|+|++|. +..++ ..+..+++|++|++++
T Consensus 17 ~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp TEEECTTCCCSSCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTT
T ss_pred eEEecCCCCccccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCC
Confidence 445554 4667776665 578888888888 55544 467788888888888887 54444 3467788888888888
Q ss_pred CCCcccccc-cCcCCcCCcccc
Q 035555 524 TNSLRYLPV-GIRELIRLRRVR 544 (767)
Q Consensus 524 ~~~l~~lp~-~~~~l~~L~~L~ 544 (767)
| .+..+|. .+..+++|+.|.
T Consensus 93 n-~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 93 N-QLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEE
T ss_pred C-cccccChhHhcccCCCCEEE
Confidence 7 4455543 234444444443
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.36 E-value=3.5e-12 Score=142.19 Aligned_cols=173 Identities=17% Similarity=0.123 Sum_probs=124.1
Q ss_pred eeeeeccC--CCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCC
Q 035555 446 CRRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDY 523 (767)
Q Consensus 446 ~L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~ 523 (767)
.|+.|+++ .+..+|..+. ++|++|+|++|. ++.+| ..+++|++|++++|. +..+|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCC
Confidence 56777776 5667887764 899999999999 88898 568999999999998 777988 655 999999999
Q ss_pred CCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEec
Q 035555 524 TNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFD 603 (767)
Q Consensus 524 ~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 603 (767)
| .+..+|. .+++|+.|++..+.... + +. .+++|+.|++++|
T Consensus 130 N-~l~~lp~---~l~~L~~L~Ls~N~l~~-----l--------------------p~----------~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 130 N-QLTMLPE---LPALLEYINADNNQLTM-----L--------------------PE----------LPTSLEVLSVRNN 170 (571)
T ss_dssp S-CCSCCCC---CCTTCCEEECCSSCCSC-----C--------------------CC----------CCTTCCEEECCSS
T ss_pred C-cCCCCCC---cCccccEEeCCCCccCc-----C--------------------CC----------cCCCcCEEECCCC
Confidence 8 6677876 56777777553322211 0 00 2356777777777
Q ss_pred CCccCCccccCCCCccEEEEeccCCCCCCCCCCCCCCC-------CeeeecCCCCceEecccccCCCCCCCCccccCCcc
Q 035555 604 CNVIPKNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQSL-------EYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPK 676 (767)
Q Consensus 604 ~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L-------~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 676 (767)
.+..+|. +. ++|+.|+|++| .++.+|.+.. +| ++|+|++|. ++.++..+. .+++
T Consensus 171 ~L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~~l~------------~l~~ 231 (571)
T 3cvr_A 171 QLTFLPE-LP--ESLEALDVSTN-LLESLPAVPV--RNHHSEETEIFFRCRENR-ITHIPENIL------------SLDP 231 (571)
T ss_dssp CCSCCCC-CC--TTCCEEECCSS-CCSSCCCCC----------CCEEEECCSSC-CCCCCGGGG------------GSCT
T ss_pred CCCCcch-hh--CCCCEEECcCC-CCCchhhHHH--hhhcccccceEEecCCCc-ceecCHHHh------------cCCC
Confidence 7777776 44 78888888877 4456666332 66 888888876 666655433 5788
Q ss_pred cceeeccCcc
Q 035555 677 LRELKFSYME 686 (767)
Q Consensus 677 L~~L~L~~~~ 686 (767)
|+.|+|++|+
T Consensus 232 L~~L~L~~N~ 241 (571)
T 3cvr_A 232 TCTIILEDNP 241 (571)
T ss_dssp TEEEECCSSS
T ss_pred CCEEEeeCCc
Confidence 8888888874
No 108
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.36 E-value=8.3e-12 Score=125.26 Aligned_cols=172 Identities=20% Similarity=0.225 Sum_probs=104.7
Q ss_pred CcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccC-cccccCcCCcEeeCCCCCCcccccc-cCcCCcCCccc
Q 035555 466 IHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLP-QGIGKLRKLMYLDNDYTNSLRYLPV-GIRELIRLRRV 543 (767)
Q Consensus 466 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L 543 (767)
...++++++++. ++.+|..+. ++|+.|++++|. +..++ ..+..+++|++|++++| .+..++. .+..+++|
T Consensus 14 ~~~~~l~~~~~~-l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L--- 85 (251)
T 3m19_A 14 EGKKEVDCQGKS-LDSVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTEL--- 85 (251)
T ss_dssp GGGTEEECTTCC-CSSCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTC---
T ss_pred CCCeEEecCCCC-ccccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcC---
Confidence 346778888887 778886654 578888888887 44444 45778888888888887 4443332 22333333
Q ss_pred ceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccC-CccccCCCCccEEE
Q 035555 544 RKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIP-KNWIMSLTNLRYLS 622 (767)
Q Consensus 544 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~ 622 (767)
+.|++++|....+ +..+..+++|++|+
T Consensus 86 ----------------------------------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 86 ----------------------------------------------------GTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp ----------------------------------------------------CEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ----------------------------------------------------CEEECCCCcccccChhHhcccCCCCEEE
Confidence 3333333333222 33455677888888
Q ss_pred EeccCCCCCCCC--CCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCccCCccccc
Q 035555 623 LSLFKNCEQLLP--LGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGE 700 (767)
Q Consensus 623 L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~ 700 (767)
|++| .++.+++ +..+++|++|+|++|. ++.++... +..+++|+.|+|++| .+..++ +..
T Consensus 114 L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~L~~N-~l~~~~-----~~~ 174 (251)
T 3m19_A 114 LGGN-QLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGA-----------FDKLTNLQTLSLSTN-QLQSVP-----HGA 174 (251)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-----------TTTCTTCCEEECCSS-CCSCCC-----TTT
T ss_pred cCCC-cCCCcChhHhccCCcccEEECcCCc-CCccCHHH-----------cCcCcCCCEEECCCC-cCCccC-----HHH
Confidence 8876 3444444 5677788888887775 44444321 236677777777776 344332 223
Q ss_pred cccCcccceEeeccCc
Q 035555 701 IIIMPRLSCLIIFGCF 716 (767)
Q Consensus 701 ~~~~~~L~~L~l~~c~ 716 (767)
+..+++|+.|++++|+
T Consensus 175 ~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 175 FDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTCTTCCEEECCSCC
T ss_pred HhCCCCCCEEEeeCCc
Confidence 5567777777777764
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.35 E-value=2.9e-12 Score=131.49 Aligned_cols=167 Identities=22% Similarity=0.186 Sum_probs=134.2
Q ss_pred cCceeeeeccC--CCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEee
Q 035555 443 LIKCRRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLD 520 (767)
Q Consensus 443 ~~~~L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~ 520 (767)
.++.|+.|+++ .+..++ .++.+++|++|++++|. ++.++. +.++++|++|++++|. +..+| .+..+++|++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEE
T ss_pred hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCc-CCCCh-hhccCCCCCEEE
Confidence 45677888877 455665 48899999999999999 888877 9999999999999998 77766 489999999999
Q ss_pred CCCCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEE
Q 035555 521 NDYTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLEL 600 (767)
Q Consensus 521 l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 600 (767)
+++| .+..+ ..+..+++|+.|++..+.... +..+..+++|+.|++++.. +.... .+..+++|+.|++
T Consensus 119 L~~n-~i~~~-~~l~~l~~L~~L~l~~n~l~~-----~~~l~~l~~L~~L~L~~N~-l~~~~-----~l~~l~~L~~L~L 185 (291)
T 1h6t_A 119 LEHN-GISDI-NGLVHLPQLESLYLGNNKITD-----ITVLSRLTKLDTLSLEDNQ-ISDIV-----PLAGLTKLQNLYL 185 (291)
T ss_dssp CTTS-CCCCC-GGGGGCTTCCEEECCSSCCCC-----CGGGGGCTTCSEEECCSSC-CCCCG-----GGTTCTTCCEEEC
T ss_pred CCCC-cCCCC-hhhcCCCCCCEEEccCCcCCc-----chhhccCCCCCEEEccCCc-cccch-----hhcCCCccCEEEC
Confidence 9999 66666 467788888888776554442 3678889999999998743 22221 2788999999999
Q ss_pred EecCCccCCccccCCCCccEEEEeccCC
Q 035555 601 RFDCNVIPKNWIMSLTNLRYLSLSLFKN 628 (767)
Q Consensus 601 ~~~~~~~~p~~~~~l~~L~~L~L~~~~~ 628 (767)
++|....+|. +..+++|+.|++++|..
T Consensus 186 ~~N~i~~l~~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 186 SKNHISDLRA-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CSSCCCBCGG-GTTCTTCSEEEEEEEEE
T ss_pred CCCcCCCChh-hccCCCCCEEECcCCcc
Confidence 9999888775 78999999999999853
No 110
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.34 E-value=1.3e-10 Score=124.64 Aligned_cols=284 Identities=12% Similarity=0.024 Sum_probs=166.3
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccch-------hhhh---h-----hHHHH
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDV-------KKIL---R-----KEYGI 160 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~-------~~~F---~-----~~~~i 160 (767)
+..++||+++++++.+++..... ....+.+.|+|++|+||||+|+++++...- ...| . ....+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 46799999999999998854311 124568999999999999999999874211 1111 1 14567
Q ss_pred HHHHHHHhhCCCCC-ccchHHHHHHHHHhc--CCCeEEEEEeCCCCcChh--hHHHHHHhhhcC-----CCCcEEEEEcC
Q 035555 161 ARAIIEALTYSSSN-FVEFQSLMQHIQKHV--AGKKLLLVLDDVWNEDFY--KWEQFYNCLKTC-----LHGSKILITTR 230 (767)
Q Consensus 161 ~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~--~~~~l~~~l~~~-----~~gs~ilvTtR 230 (767)
...++..++..... .....++...+...+ .+++.+||||+++..... ..+.+...+... ..+..+|.||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 77788877653322 223455566666666 356899999999653221 223333333321 34567777887
Q ss_pred chhHHh----h-hcCc--ceEecCCCChhHHHHHHHHhcC---CCCCCcchhhHHHHHHHHHhhcC---CCcc-hHHHHH
Q 035555 231 KETVAR----I-MGSA--DIISVNVLSETECWLVFESLGF---SGKSMEERENLEKIGREIIRKCK---GLPL-VAKTIA 296 (767)
Q Consensus 231 ~~~v~~----~-~~~~--~~~~l~~L~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~---g~PL-ai~~~~ 296 (767)
...... . .... ..+.+++++.++..+++...+. .... . .+ +..+.+++.++ |.|. |+..+.
T Consensus 176 ~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~-~-~~---~~~~~l~~~~~~~~G~~r~~~~~l~ 250 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGV-L-DP---DVVPLCAALAAREHGDARRALDLLR 250 (387)
T ss_dssp CSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTT-B-CS---SHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCC-C-CH---HHHHHHHHHHHHhccCHHHHHHHHH
Confidence 653211 1 1112 4789999999999999987742 2111 1 12 23556777776 9994 333333
Q ss_pred hHHh-----c-C-CCHHHHHHHHhhhcccchhhhhhhhhhHHhhcccCCHHHHHHHHHhc-cCCCCcccChHHHHHHH--
Q 035555 297 SLLR-----S-K-NTEKEWQNILESEIWEIEEVEKNLLAPLLLSYNELPSKVKQCFTYCA-IFPKNSKIWKDKLIELW-- 366 (767)
Q Consensus 297 ~~l~-----~-~-~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~s-~fp~~~~i~~~~li~~w-- 366 (767)
.... . . -+.+.+..+++... ...+.-++..++.+.+..+..++ ++.....+....+.+..
T Consensus 251 ~a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
T 2v1u_A 251 VAGEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKE 320 (387)
T ss_dssp HHHHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 2221 1 1 14555655554321 12345567889998888776666 44322244444333332
Q ss_pred --HHcCCccCCCCCcHHHHHHHHHHHHHhcCCCcccc
Q 035555 367 --MAQGFLNNKRSKEMEEIGEEYFNILASRSFFQDFE 401 (767)
Q Consensus 367 --~a~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~ 401 (767)
-..| +. ......+..+++.|...+++....
T Consensus 321 ~~~~~~-~~----~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 321 LTSTLG-LE----HVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHHTT-CC----CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhcC-CC----CCCHHHHHHHHHHHHhCCCeEEEe
Confidence 1222 11 112356778999999999998743
No 111
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.32 E-value=2.3e-10 Score=122.64 Aligned_cols=280 Identities=11% Similarity=0.054 Sum_probs=165.8
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchh---------h--------hhh-hHH
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVK---------K--------ILR-KEY 158 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~---------~--------~F~-~~~ 158 (767)
..++||+++++++.+++..... ....+.|.|+|++|+||||||+++++...-. . .+. ...
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 6799999999999988764211 1245689999999999999999998742110 0 011 234
Q ss_pred HHHHHHHHHhhCCCC--CccchHHHHHHHHHhcCCCeEEEEEeCCCCcChhh-HHH-HHHhhhcCCCCcEEEEEcCchhH
Q 035555 159 GIARAIIEALTYSSS--NFVEFQSLMQHIQKHVAGKKLLLVLDDVWNEDFYK-WEQ-FYNCLKTCLHGSKILITTRKETV 234 (767)
Q Consensus 159 ~i~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-~~~-l~~~l~~~~~gs~ilvTtR~~~v 234 (767)
.+...++..+.+... .......+...+...+..++.+|||||++...... .+. +...+... .+..+|+||+....
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCch
Confidence 556667777643222 12234566777777787766699999996432111 222 22223222 67789999987532
Q ss_pred H----hhh-cC-cceEecCCCChhHHHHHHHHhc---CCCCCCcchhhHHHHHHHHHhhcC---CCcc-hHHHHHhHH--
Q 035555 235 A----RIM-GS-ADIISVNVLSETECWLVFESLG---FSGKSMEERENLEKIGREIIRKCK---GLPL-VAKTIASLL-- 299 (767)
Q Consensus 235 ~----~~~-~~-~~~~~l~~L~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~---g~PL-ai~~~~~~l-- 299 (767)
. ... .. ...+.+++++.++..+++...+ +.... .. + +..+.|++.++ |.|. |+..+-...
T Consensus 177 ~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~-~~-~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~ 251 (384)
T 2qby_B 177 RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGT-YD-D---EILSYIAAISAKEHGDARKAVNLLFRAAQL 251 (384)
T ss_dssp TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTS-CC-S---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCC-cC-H---HHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 1 111 11 2489999999999999999874 22111 11 1 23556666776 8886 444433332
Q ss_pred h-c--CCCHHHHHHHHhhhcccchhhhhhhhhhHHhhcccCCHHHHHHHHHhccCCCC-cccChHHHHHHHHHcCCccCC
Q 035555 300 R-S--KNTEKEWQNILESEIWEIEEVEKNLLAPLLLSYNELPSKVKQCFTYCAIFPKN-SKIWKDKLIELWMAQGFLNNK 375 (767)
Q Consensus 300 ~-~--~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~s~fp~~-~~i~~~~li~~w~a~g~~~~~ 375 (767)
. . .-+.+.+..+++... ...+.-++..|+...+..+..++. ... -.+. .......-..| ..
T Consensus 252 a~~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~-~~~~~~~~-~~~~~~~~~~g-~~-- 316 (384)
T 2qby_B 252 ASGGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIE-SEDVMSAH-KMYTDLCNKFK-QK-- 316 (384)
T ss_dssp TTSSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHT-CCBHHHHH-HHHHHHHHHTT-CC--
T ss_pred hcCCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHH-hcccChHH-HHHHHHHHHcC-CC--
Confidence 1 1 125666666655321 133556778899888887777766 211 1111 11112222223 11
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcccc
Q 035555 376 RSKEMEEIGEEYFNILASRSFFQDFE 401 (767)
Q Consensus 376 ~~~~~~~~~~~~l~~L~~~sll~~~~ 401 (767)
.........++..|...+++....
T Consensus 317 --~~~~~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 317 --PLSYRRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp --CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred --CCCHHHHHHHHHHHHhCCCEEEEe
Confidence 112345678899999999998754
No 112
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.31 E-value=9.9e-12 Score=124.26 Aligned_cols=194 Identities=14% Similarity=0.157 Sum_probs=122.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhh----HHHHHHHHHHHh---
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK----EYGIARAIIEAL--- 168 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~----~~~i~~~i~~~l--- 168 (767)
..+++||+++++.+.+++.... ..+.+.|+|++|+||||+|+.+++.......+.. .......+....
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVD 96 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSS
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcc
Confidence 3469999999999999997542 2358899999999999999999874211110000 000000010000
Q ss_pred --hCCCCCccchHHHHHHHHHhc-----CCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCchh-HH-hhhc
Q 035555 169 --TYSSSNFVEFQSLMQHIQKHV-----AGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKET-VA-RIMG 239 (767)
Q Consensus 169 --~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~-~~~~ 239 (767)
..........+.+. .+.+.+ .+++.+||+||++..+...+..+...+.....+..+|+||+... +. ....
T Consensus 97 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~ 175 (250)
T 1njg_A 97 LIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 175 (250)
T ss_dssp EEEEETTCGGGHHHHH-HHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHT
T ss_pred eEEecCcccccHHHHH-HHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHH
Confidence 00001111222222 233322 35679999999977666778888888876666788888887643 21 1223
Q ss_pred CcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHHhHH
Q 035555 240 SADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIASLL 299 (767)
Q Consensus 240 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 299 (767)
....+.+++++.++..+++...+........ .+..+.|++.++|.|..+..+...+
T Consensus 176 r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 176 RCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHTTCCBC----HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhccCCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3568999999999999999877633222111 2446789999999999887766543
No 113
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.31 E-value=3e-13 Score=143.83 Aligned_cols=235 Identities=14% Similarity=0.050 Sum_probs=140.9
Q ss_pred cCceeeeeccCC--Ccccc-----cccccCC-cccEEeecCCcccccc-chhhcCC-----CCCcEEEccCCccccccC-
Q 035555 443 LIKCRRWRCDNY--IKEIP-----TNIEKLI-HLKYLNLSSQKKIKRL-PETLCEL-----YNLECLAISFCTNLRQLP- 507 (767)
Q Consensus 443 ~~~~L~~l~l~~--~~~lp-----~~~~~l~-~L~~L~L~~~~~~~~l-p~~~~~l-----~~L~~L~L~~~~~l~~lp- 507 (767)
..+.|+.|+++. ++..+ ..+..++ +|++|+|++|. ++.. +..+..+ ++|++|+|++|. +...+
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~ 97 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSS 97 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHH
Confidence 344588888873 44444 5677787 89999999988 5543 4555554 889999999988 54333
Q ss_pred cc----cccC-cCCcEeeCCCCCCcccccc-c----CcCC-cCCcccceeEecCccCCCCC-hhhhhcCC-CCCCeeeeC
Q 035555 508 QG----IGKL-RKLMYLDNDYTNSLRYLPV-G----IREL-IRLRRVRKFVVGGGYDRACS-LESLKRLI-LLRECRIHG 574 (767)
Q Consensus 508 ~~----~~~l-~~L~~L~l~~~~~l~~lp~-~----~~~l-~~L~~L~~~~~~~~~~~~~~-~~~l~~l~-~L~~L~i~~ 574 (767)
.. +..+ ++|++|++++| .+...+. . +..+ ++|+.|++..+......... ...+..++ +|+.|++++
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence 32 4444 78999999988 4554442 2 3332 57777766554443211111 23334554 788888887
Q ss_pred CCCCCChhhhHHhhccCC-CCcCceEEEecCCcc-----CCccccC-CCCccEEEEeccCCCCCCC------CCCCCCCC
Q 035555 575 LGDVSDVGEARRAELEKK-KNLFDLELRFDCNVI-----PKNWIMS-LTNLRYLSLSLFKNCEQLL------PLGKLQSL 641 (767)
Q Consensus 575 l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~-----~p~~~~~-l~~L~~L~L~~~~~~~~l~------~l~~l~~L 641 (767)
+.--..........+..+ ++|+.|+|++|.... ++..+.. .++|+.|+|++|. ++..+ .+..+++|
T Consensus 177 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L 255 (362)
T 3goz_A 177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHL 255 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTC
T ss_pred CCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCc
Confidence 432112222333445566 489999999888654 4555554 4589999998874 33322 14677888
Q ss_pred CeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCcc
Q 035555 642 EYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYME 686 (767)
Q Consensus 642 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 686 (767)
++|++++|. +..++....... ...+..+++|+.|++++|.
T Consensus 256 ~~L~L~~n~-l~~i~~~~~~~l----~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 256 QTVYLDYDI-VKNMSKEQCKAL----GAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp SEEEEEHHH-HTTCCHHHHHHH----HTTSTTCCEEEEECTTSCB
T ss_pred cEEEeccCC-ccccCHHHHHHH----HHHhccCCceEEEecCCCc
Confidence 888888875 222221110000 0012367778888888874
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.31 E-value=3.8e-14 Score=158.90 Aligned_cols=121 Identities=22% Similarity=0.241 Sum_probs=86.8
Q ss_pred CcCceEEEecCCccCCccccCCCCccEEEEeccCCCCCCCC-CCCCCCCCeeeecCCCCceEecccccCCCCCCCCcccc
Q 035555 594 NLFDLELRFDCNVIPKNWIMSLTNLRYLSLSLFKNCEQLLP-LGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVI 672 (767)
Q Consensus 594 ~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 672 (767)
.|+.|++++|.+..+|. +..+++|+.|+|++|. ++.+|. ++.+++|++|+|++|. ++.++ . ++
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~------------l~ 505 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA-LENVD-G------------VA 505 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCG-G------------GT
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCC-CCCCc-c------------cC
Confidence 47888888888888887 7888889999988874 446654 7788888899888876 55454 2 23
Q ss_pred CCcccceeeccCccccccCccCCccccccccCcccceEeeccCccccCCCcCCC----CCCCCcEEEe
Q 035555 673 AFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDLLL----QKTTLQKLHI 736 (767)
Q Consensus 673 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~----~l~sL~~L~l 736 (767)
.+++|+.|+|++| .++.+. .+..+..+++|+.|++++| .++.+|.... .+++|+.|++
T Consensus 506 ~l~~L~~L~Ls~N-~l~~~~----~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 506 NLPRLQELLLCNN-RLQQSA----AIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TCSSCCEEECCSS-CCCSSS----TTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCcEEECCCC-CCCCCC----CcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 7888888888887 444432 0335678888999999888 5666654332 2677887753
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.31 E-value=1.1e-12 Score=132.52 Aligned_cols=167 Identities=19% Similarity=0.183 Sum_probs=127.1
Q ss_pred cCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCcccccccCcCCcCCccc
Q 035555 464 KLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPVGIRELIRLRRV 543 (767)
Q Consensus 464 ~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 543 (767)
.+.++..++++++. ++.++ .+..+++|++|++++|. +..+| .+..+++|++|++++| .+..+|. +..+++|+.|
T Consensus 17 ~l~~l~~l~l~~~~-i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQS-VTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSC-TTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCC-ccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEE
Confidence 56778888999988 88887 58899999999999997 88888 7889999999999998 6677766 7777777777
Q ss_pred ceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCCccccCCCCccEEEE
Q 035555 544 RKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPKNWIMSLTNLRYLSL 623 (767)
Q Consensus 544 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L 623 (767)
++..+.... ++ .+.. ++|+.|++++|....+| .+..+++|+.|++
T Consensus 91 ~L~~N~l~~----------------------l~-----------~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~L 135 (263)
T 1xeu_A 91 SVNRNRLKN----------------------LN-----------GIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSI 135 (263)
T ss_dssp ECCSSCCSC----------------------CT-----------TCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEEC
T ss_pred ECCCCccCC----------------------cC-----------cccc-CcccEEEccCCccCCCh-hhcCcccccEEEC
Confidence 543322211 00 0112 67888888888877765 4778899999999
Q ss_pred eccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCcc
Q 035555 624 SLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYME 686 (767)
Q Consensus 624 ~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 686 (767)
++| .++.++.++.+++|++|++++|. ++.+ . .+..+++|+.|++++|+
T Consensus 136 s~N-~i~~~~~l~~l~~L~~L~L~~N~-i~~~-~------------~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 136 RNN-KLKSIVMLGFLSKLEVLDLHGNE-ITNT-G------------GLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTS-CCCBCGGGGGCTTCCEEECTTSC-CCBC-T------------TSTTCCCCCEEEEEEEE
T ss_pred CCC-cCCCChHHccCCCCCEEECCCCc-Ccch-H------------HhccCCCCCEEeCCCCc
Confidence 987 45667778889999999999887 4443 1 13478899999998874
No 116
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.31 E-value=1.2e-10 Score=125.27 Aligned_cols=288 Identities=14% Similarity=0.057 Sum_probs=171.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchh--hh---hh-----hHHHHHHHHH
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVK--KI---LR-----KEYGIARAII 165 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~--~~---F~-----~~~~i~~~i~ 165 (767)
+..++||+++++++.+++.....+.....+.+.|+|++|+||||||+.+++...-. .. .. ....+...++
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHH
Confidence 36799999999999998875311011123489999999999999999998742111 00 01 1456777777
Q ss_pred HHhhCCCCC-ccchHHHHHHHHHhcC--CCeEEEEEeCCCCcChhhHHHHHHhhhcCC----CCcEEEEEcCchhHHhhh
Q 035555 166 EALTYSSSN-FVEFQSLMQHIQKHVA--GKKLLLVLDDVWNEDFYKWEQFYNCLKTCL----HGSKILITTRKETVARIM 238 (767)
Q Consensus 166 ~~l~~~~~~-~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~ilvTtR~~~v~~~~ 238 (767)
..++..... .....++...+...+. +++.+||||+++..+......+...+.... .+..||+||++......+
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 777643221 2234455555555553 668899999997765555666666554321 466788888765433222
Q ss_pred c-------CcceEecCCCChhHHHHHHHHhcCC--CCCCcchhhHHHHHHHHHhhc---------CCCcchHHHHHhH-H
Q 035555 239 G-------SADIISVNVLSETECWLVFESLGFS--GKSMEERENLEKIGREIIRKC---------KGLPLVAKTIASL-L 299 (767)
Q Consensus 239 ~-------~~~~~~l~~L~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~---------~g~PLai~~~~~~-l 299 (767)
. ....+.+++++.++..+++...+.. ..... ..+..+.|++.+ .|.|..+..+... .
T Consensus 176 ~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 176 DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSY----SEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSS----CHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred CHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCC----CHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 1 1236999999999999999876421 01111 124466788888 7887544433322 1
Q ss_pred h-----cC--CCHHHHHHHHhhhcccchhhhhhhhhhHHhhcccCCHHHHHHHHHhccCC---CCcccChHHHHHHHHH-
Q 035555 300 R-----SK--NTEKEWQNILESEIWEIEEVEKNLLAPLLLSYNELPSKVKQCFTYCAIFP---KNSKIWKDKLIELWMA- 368 (767)
Q Consensus 300 ~-----~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~s~fp---~~~~i~~~~li~~w~a- 368 (767)
. .. -+.+.......... ...+.-.+..|+.+.+.++..++.+. .+..++...+...+..
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~ 321 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIV 321 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH
Confidence 1 11 12333322222111 11223346678888888887777654 2224555666554432
Q ss_pred ---cCCccCCCCCcHHHHHHHHHHHHHhcCCCccccc
Q 035555 369 ---QGFLNNKRSKEMEEIGEEYFNILASRSFFQDFER 402 (767)
Q Consensus 369 ---~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~ 402 (767)
.|... -.......++++|...+++.....
T Consensus 322 ~~~~~~~~-----~~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 322 CEEYGERP-----RVHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHHTTCCC-----CCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHcCCCC-----CCHHHHHHHHHHHHhCCCeEEeee
Confidence 22111 112456788999999999987543
No 117
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.29 E-value=4.5e-14 Score=161.31 Aligned_cols=103 Identities=15% Similarity=0.025 Sum_probs=61.1
Q ss_pred cCceeeeeccCCCcc---cccccc-cCCcccEEeecCCccccc--cchhhcCCCCCcEEEccCCccccc-----cCcccc
Q 035555 443 LIKCRRWRCDNYIKE---IPTNIE-KLIHLKYLNLSSQKKIKR--LPETLCELYNLECLAISFCTNLRQ-----LPQGIG 511 (767)
Q Consensus 443 ~~~~L~~l~l~~~~~---lp~~~~-~l~~L~~L~L~~~~~~~~--lp~~~~~l~~L~~L~L~~~~~l~~-----lp~~~~ 511 (767)
.++.|+.|+++.... .+..+. .+++|++|++++|..++. ++..+.++++|++|++++|. +.. ++....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPD 181 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhh
Confidence 566777777774321 123343 577888888888854554 55555578888888888887 322 333334
Q ss_pred cCcCCcEeeCCCCC-Cc--ccccccCcCCcCCccccee
Q 035555 512 KLRKLMYLDNDYTN-SL--RYLPVGIRELIRLRRVRKF 546 (767)
Q Consensus 512 ~l~~L~~L~l~~~~-~l--~~lp~~~~~l~~L~~L~~~ 546 (767)
.+++|++|++++|. .+ ..++.-+..+++|+.|.+.
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence 67788888888773 11 1111112335666666554
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.27 E-value=8.3e-12 Score=120.15 Aligned_cols=148 Identities=15% Similarity=0.132 Sum_probs=106.0
Q ss_pred cCceeeeeccC--CCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEee
Q 035555 443 LIKCRRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLD 520 (767)
Q Consensus 443 ~~~~L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~ 520 (767)
.++.|+.|+++ .+..+| .+..+++|++|++++|. +..++ .+..+++|++|++++|......|..+..+++|++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 45667777776 566777 79999999999999996 77665 588999999999999984455788899999999999
Q ss_pred CCCCCCcccccccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEE
Q 035555 521 NDYTNSLRYLPVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLEL 600 (767)
Q Consensus 521 l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 600 (767)
+++|......|..++.+++|+.| ++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L-------------------------------------------------------~L 143 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSI-------------------------------------------------------DL 143 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEE-------------------------------------------------------EC
T ss_pred ecCCccCcHhHHHHhhCCCCCEE-------------------------------------------------------Ec
Confidence 99983322333334444333333 33
Q ss_pred EecC-CccCCccccCCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCC
Q 035555 601 RFDC-NVIPKNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMH 650 (767)
Q Consensus 601 ~~~~-~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 650 (767)
++|. ...+| .+..+++|+.|++++| .+..++.+..+++|++|++++|+
T Consensus 144 ~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 144 SYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTTGGGCSSCCEEEECBC-
T ss_pred cCCCCccccH-hhcCCCCCCEEECCCC-CCcChHHhccCCCCCEEEeeCcc
Confidence 3333 22233 3566778888888876 34556677788888888888876
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.27 E-value=3.9e-14 Score=158.80 Aligned_cols=214 Identities=16% Similarity=0.057 Sum_probs=128.3
Q ss_pred ccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCcccccccCcCCcCCcc
Q 035555 463 EKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPVGIRELIRLRR 542 (767)
Q Consensus 463 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~ 542 (767)
..+++|+.|+|++|. ++.+|+.+++|++|+.|++++|..+..+|..+. .+ ......|..++.+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~------~~-----~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMR------AL-----DPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------HH-----CTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHH------hc-----ccccCCHHHHHHHHhccc
Confidence 456677777777776 667777777777777777755531111111000 00 011223333444444444
Q ss_pred cceeE-ecCcc-----CCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCCccccCCC
Q 035555 543 VRKFV-VGGGY-----DRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPKNWIMSLT 616 (767)
Q Consensus 543 L~~~~-~~~~~-----~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~ 616 (767)
|+... ..... .....+..+.. ..|+.|.+++. .+... + .+..+++|+.|+|++|.+..+|..+..++
T Consensus 414 L~~l~~n~~~~L~~l~l~~n~i~~l~~-~~L~~L~Ls~n-~l~~l----p-~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 486 (567)
T 1dce_A 414 VDPMRAAYLDDLRSKFLLENSVLKMEY-ADVRVLHLAHK-DLTVL----C-HLEQLLLVTHLDLSHNRLRALPPALAALR 486 (567)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHHHHH-TTCSEEECTTS-CCSSC----C-CGGGGTTCCEEECCSSCCCCCCGGGGGCT
T ss_pred CcchhhcccchhhhhhhhcccccccCc-cCceEEEecCC-CCCCC----c-CccccccCcEeecCcccccccchhhhcCC
Confidence 43110 00000 00001111111 13666666653 12221 1 27788999999999999999999999999
Q ss_pred CccEEEEeccCCCCCCCCCCCCCCCCeeeecCCCCceEe--cccccCCCCCCCCccccCCcccceeeccCccccccCccC
Q 035555 617 NLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRV--GNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFG 694 (767)
Q Consensus 617 ~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~ 694 (767)
+|+.|+|++| .++.+|.++.+++|++|+|++|. ++.+ +.. +..+++|+.|+|++|+ ++..+..
T Consensus 487 ~L~~L~Ls~N-~l~~lp~l~~l~~L~~L~Ls~N~-l~~~~~p~~------------l~~l~~L~~L~L~~N~-l~~~~~~ 551 (567)
T 1dce_A 487 CLEVLQASDN-ALENVDGVANLPRLQELLLCNNR-LQQSAAIQP------------LVSCPRLVLLNLQGNS-LCQEEGI 551 (567)
T ss_dssp TCCEEECCSS-CCCCCGGGTTCSSCCEEECCSSC-CCSSSTTGG------------GGGCTTCCEEECTTSG-GGGSSSC
T ss_pred CCCEEECCCC-CCCCCcccCCCCCCcEEECCCCC-CCCCCCcHH------------HhcCCCCCEEEecCCc-CCCCccH
Confidence 9999999988 45568889999999999999987 5544 332 3489999999999984 5544321
Q ss_pred CccccccccCcccceEee
Q 035555 695 TATKGEIIIMPRLSCLII 712 (767)
Q Consensus 695 ~~~~~~~~~~~~L~~L~l 712 (767)
.......+|+|+.|++
T Consensus 552 --~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 552 --QERLAEMLPSVSSILT 567 (567)
T ss_dssp --TTHHHHHCTTCSEEEC
T ss_pred --HHHHHHHCcccCccCC
Confidence 1112335889998864
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.25 E-value=2.6e-11 Score=117.79 Aligned_cols=66 Identities=33% Similarity=0.520 Sum_probs=38.2
Q ss_pred CcccccccccCCcccEEeecCCccccccch-hhcCCCCCcEEEccCCccccccCcc-cccCcCCcEeeCCCC
Q 035555 455 IKEIPTNIEKLIHLKYLNLSSQKKIKRLPE-TLCELYNLECLAISFCTNLRQLPQG-IGKLRKLMYLDNDYT 524 (767)
Q Consensus 455 ~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~~L~l~~~ 524 (767)
+..+|..+ .++|++|++++|. ++.+|. .+.++++|++|++++|. +..+|.. +..+++|++|++++|
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 19 RTSVPTGI--PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp CSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCCCCCC--CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCC
Confidence 44455443 3466666666666 555443 35566666666666665 4455443 456666666666665
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.22 E-value=6.9e-11 Score=115.76 Aligned_cols=137 Identities=22% Similarity=0.212 Sum_probs=88.1
Q ss_pred CCcccccccccCCcccEEeecCCccccccch-hhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCcccccc
Q 035555 454 YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPE-TLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPV 532 (767)
Q Consensus 454 ~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~ 532 (767)
.++.+|..+. ..|+.|++++|. ++.+|. .+..+++|++|+|++|......|..+..+++|++|++++| .+..+|.
T Consensus 22 ~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~ 97 (220)
T 2v9t_B 22 GLTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPK 97 (220)
T ss_dssp CCSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCT
T ss_pred CcCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCH
Confidence 4566776654 678888888887 666654 6777888888888888733334667788888888888877 5555554
Q ss_pred c-CcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccC-Cc
Q 035555 533 G-IRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIP-KN 610 (767)
Q Consensus 533 ~-~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~ 610 (767)
. +..+++ |+.|+|++|....+ |.
T Consensus 98 ~~f~~l~~-------------------------------------------------------L~~L~L~~N~l~~~~~~ 122 (220)
T 2v9t_B 98 SLFEGLFS-------------------------------------------------------LQLLLLNANKINCLRVD 122 (220)
T ss_dssp TTTTTCTT-------------------------------------------------------CCEEECCSSCCCCCCTT
T ss_pred hHccCCCC-------------------------------------------------------CCEEECCCCCCCEeCHH
Confidence 3 233333 33333333433322 44
Q ss_pred cccCCCCccEEEEeccCCCCCCCC--CCCCCCCCeeeecCCC
Q 035555 611 WIMSLTNLRYLSLSLFKNCEQLLP--LGKLQSLEYLQIGGMH 650 (767)
Q Consensus 611 ~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~ 650 (767)
.+..+++|+.|+|++|. ++.++. +..+++|++|+|++|+
T Consensus 123 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 123 AFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence 56677778888887764 333332 6677888888888776
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.22 E-value=9.1e-11 Score=115.71 Aligned_cols=137 Identities=25% Similarity=0.280 Sum_probs=92.8
Q ss_pred CCcccccccccCCcccEEeecCCcccccc-chhhcCCCCCcEEEccCCccccccCcc-cccCcCCcEeeCCCCCCccccc
Q 035555 454 YIKEIPTNIEKLIHLKYLNLSSQKKIKRL-PETLCELYNLECLAISFCTNLRQLPQG-IGKLRKLMYLDNDYTNSLRYLP 531 (767)
Q Consensus 454 ~~~~lp~~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp 531 (767)
.+..+|..+. ++|++|+|++|. +..+ |..+.++++|++|+|++|. +..+|.. +..+++|++|++++| .+..+|
T Consensus 30 ~l~~ip~~~~--~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~ 104 (229)
T 3e6j_A 30 RHASVPAGIP--TNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-QLTVLP 104 (229)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCC
T ss_pred CcCccCCCCC--CCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC-cCCccC
Confidence 3556666554 778888888887 5544 5667778888888888877 5666643 567788888888777 444443
Q ss_pred ccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCCcc
Q 035555 532 VGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPKNW 611 (767)
Q Consensus 532 ~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~ 611 (767)
.. .+..+++|+.|++++|.+..+|..
T Consensus 105 ~~------------------------------------------------------~~~~l~~L~~L~Ls~N~l~~lp~~ 130 (229)
T 3e6j_A 105 SA------------------------------------------------------VFDRLVHLKELFMCCNKLTELPRG 130 (229)
T ss_dssp TT------------------------------------------------------TTTTCTTCCEEECCSSCCCSCCTT
T ss_pred hh------------------------------------------------------HhCcchhhCeEeccCCcccccCcc
Confidence 22 112234455555566666666777
Q ss_pred ccCCCCccEEEEeccCCCCCCCC--CCCCCCCCeeeecCCC
Q 035555 612 IMSLTNLRYLSLSLFKNCEQLLP--LGKLQSLEYLQIGGMH 650 (767)
Q Consensus 612 ~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~ 650 (767)
+..+++|+.|+|++|. +..++. +..+++|++|++++|+
T Consensus 131 ~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 131 IERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp GGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence 7788888888888774 445543 6778889999988876
No 123
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.18 E-value=2.5e-10 Score=112.18 Aligned_cols=181 Identities=10% Similarity=0.025 Sum_probs=115.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCCc
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSNF 175 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~~ 175 (767)
-.+++||++.++.+.+++.... .+.+.|+|++|+|||++|+.+++... ...+.. ..+.......
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~---------~~~~~~~~~~ 79 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLF-GENWRD---------NFIEMNASDE 79 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGG---------GEEEEETTCT
T ss_pred HHHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHh-cccccc---------ceEEeccccc
Confidence 4569999999999999997542 22489999999999999999987311 111110 0000000111
Q ss_pred cchHHHHHHHHHhc------CCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCchhH--HhhhcCcceEecC
Q 035555 176 VEFQSLMQHIQKHV------AGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKETV--ARIMGSADIISVN 247 (767)
Q Consensus 176 ~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v--~~~~~~~~~~~l~ 247 (767)
.........+.... .+++.+||+||++.........+...+.....+.++|+||+.... .........+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~ 159 (226)
T 2chg_A 80 RGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFK 159 (226)
T ss_dssp TCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred cChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecC
Confidence 11222222333322 357899999999776666677777777776677888888876431 1122334589999
Q ss_pred CCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHH
Q 035555 248 VLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIA 296 (767)
Q Consensus 248 ~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 296 (767)
+++.++..+++.+.+........ .+..+.|++.++|.|..+..+.
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 160 PVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999876532121111 2346778889999998654433
No 124
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.18 E-value=1.3e-10 Score=112.85 Aligned_cols=72 Identities=22% Similarity=0.253 Sum_probs=55.2
Q ss_pred cEEeecCCccccccchhhcCCCCCcEEEccCCccccccCc-ccccCcCCcEeeCCCCCCccccccc-CcCCcCCcccce
Q 035555 469 KYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQ-GIGKLRKLMYLDNDYTNSLRYLPVG-IRELIRLRRVRK 545 (767)
Q Consensus 469 ~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~ 545 (767)
+.++.+++. ++.+|..+ .++|++|++++|. +..+|. .+..+++|++|++++| .+..+|.. +..+++|++|++
T Consensus 10 ~~v~c~~~~-l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 10 TTVECYSQG-RTSVPTGI--PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp TEEECCSSC-CSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEecCCC-ccCCCCCC--CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEEC
Confidence 567777777 77888654 4689999999998 666665 4688999999999998 66677654 567777777754
No 125
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.16 E-value=7.5e-10 Score=118.73 Aligned_cols=286 Identities=14% Similarity=0.063 Sum_probs=159.3
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchh----h---hhhh-----HHHHHH
Q 035555 95 DESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVK----K---ILRK-----EYGIAR 162 (767)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~----~---~F~~-----~~~i~~ 162 (767)
.+..|+||+++++.+.+++..... ....+.+.|+|++|+||||||+++++...-. . .+++ ...+..
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHH
Confidence 346799999999999998864211 1245689999999999999999998742110 0 0111 344555
Q ss_pred HHHHHhhCCCC-CccchHHHHHHHHHhcC--CCeEEEEEeCCCCcC----hhhHHHHHHhhhc-CCCCcEEEEEcCchhH
Q 035555 163 AIIEALTYSSS-NFVEFQSLMQHIQKHVA--GKKLLLVLDDVWNED----FYKWEQFYNCLKT-CLHGSKILITTRKETV 234 (767)
Q Consensus 163 ~i~~~l~~~~~-~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v 234 (767)
.++..++.... ......+....+.+.+. +++.+||+|+++... ...+..+...+.. ...+..+|+||+....
T Consensus 96 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 96 DLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp HHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh
Confidence 56555543221 11234455555555553 458999999995421 2334444444432 2335567778876543
Q ss_pred Hhhhc-----C--cceEecCCCChhHHHHHHHHhcCCCC-CCcchhhHHHHHHHHHhhcC---CCcchH-HHHHhHHh--
Q 035555 235 ARIMG-----S--ADIISVNVLSETECWLVFESLGFSGK-SMEERENLEKIGREIIRKCK---GLPLVA-KTIASLLR-- 300 (767)
Q Consensus 235 ~~~~~-----~--~~~~~l~~L~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~---g~PLai-~~~~~~l~-- 300 (767)
...+. . ...+.+++++.++..+++...+.... ..... .++.+.+++.++ |.|..+ ..+.....
T Consensus 176 ~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 176 VDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp GGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 22211 1 25899999999999999987542100 11111 234556666666 998844 33322211
Q ss_pred ---c--CCCHHHHHHHHhhhcccchhhhhhhhhhHHhhcccCCHHHHHHHHHhccCCC-C-cccChHHHHHHH----HHc
Q 035555 301 ---S--KNTEKEWQNILESEIWEIEEVEKNLLAPLLLSYNELPSKVKQCFTYCAIFPK-N-SKIWKDKLIELW----MAQ 369 (767)
Q Consensus 301 ---~--~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~s~fp~-~-~~i~~~~li~~w----~a~ 369 (767)
. .-+.+.+..+++... ...+.-++..+|...+..+..++.+.+ + ..+....+.+.. -..
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~ 322 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL 322 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH
T ss_pred HhcCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc
Confidence 1 114455544444321 123455677888888877776664221 1 123333332221 111
Q ss_pred CCccCCCCCcHHHHHHHHHHHHHhcCCCccc
Q 035555 370 GFLNNKRSKEMEEIGEEYFNILASRSFFQDF 400 (767)
Q Consensus 370 g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~ 400 (767)
| +.+ ........+++.|...+++...
T Consensus 323 g-~~~----~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 323 G-VEA----VTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp T-CCC----CCHHHHHHHHHHHHHHTSEEEE
T ss_pred C-CCC----CCHHHHHHHHHHHHhCCCEEEE
Confidence 2 111 1124466789999999999764
No 126
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.16 E-value=1.9e-10 Score=112.64 Aligned_cols=146 Identities=14% Similarity=0.186 Sum_probs=102.7
Q ss_pred cEEeecCCccccccchhhcCCCCCcEEEccCCccccccCc-ccccCcCCcEeeCCCCCCcccc-cccCcCCcCCccccee
Q 035555 469 KYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQ-GIGKLRKLMYLDNDYTNSLRYL-PVGIRELIRLRRVRKF 546 (767)
Q Consensus 469 ~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~~~ 546 (767)
+.++++++. ++.+|..+. ++|+.|++++|. +..+|. .+..+++|++|++++| .+..+ |..+..+
T Consensus 14 ~~v~c~~~~-l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l--------- 79 (220)
T 2v9t_B 14 NIVDCRGKG-LTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGL--------- 79 (220)
T ss_dssp TEEECTTSC-CSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTC---------
T ss_pred CEEEcCCCC-cCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCC---------
Confidence 567888887 888887654 688999999887 666655 6788888999999888 44333 3333333
Q ss_pred EecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCCcc-ccCCCCccEEEEec
Q 035555 547 VVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPKNW-IMSLTNLRYLSLSL 625 (767)
Q Consensus 547 ~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~L~~ 625 (767)
++|+.|+|++|.+..+|.. +..+++|+.|+|++
T Consensus 80 ----------------------------------------------~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 113 (220)
T 2v9t_B 80 ----------------------------------------------RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNA 113 (220)
T ss_dssp ----------------------------------------------SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ----------------------------------------------cCCCEEECCCCcCCccCHhHccCCCCCCEEECCC
Confidence 3444455555555445543 56899999999998
Q ss_pred cCCCCCCC-CCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCcc
Q 035555 626 FKNCEQLL-PLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYME 686 (767)
Q Consensus 626 ~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 686 (767)
|......+ .+..+++|++|+|++|. ++.++... +..+++|+.|+|++|+
T Consensus 114 N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-----------~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 114 NKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGT-----------FSPLRAIQTMHLAQNP 163 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTT-----------TTTCTTCCEEECCSSC
T ss_pred CCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHH-----------HhCCCCCCEEEeCCCC
Confidence 85433333 37889999999999987 55555432 2378899999999885
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.14 E-value=1.1e-10 Score=123.87 Aligned_cols=165 Identities=22% Similarity=0.219 Sum_probs=103.2
Q ss_pred eeccC--CCcccccccccCCcccEEeecCCccccccchh-hc-CCCCCcEEEccCCccccccCc-ccccCcCCcEeeCCC
Q 035555 449 WRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPET-LC-ELYNLECLAISFCTNLRQLPQ-GIGKLRKLMYLDNDY 523 (767)
Q Consensus 449 ~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~-~~-~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~ 523 (767)
+++++ .+..+|..+. ..+++|+|++|. ++.++.. +. ++++|++|+|++|. +..+|. .+..+++|++|++++
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCC
Confidence 34444 4566676554 357777887777 6665543 44 77777888887776 555543 577777777777777
Q ss_pred CCCcccccc-cCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEe
Q 035555 524 TNSLRYLPV-GIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRF 602 (767)
Q Consensus 524 ~~~l~~lp~-~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 602 (767)
| .+..++. .+..+ ++|+.|+|++
T Consensus 98 N-~l~~~~~~~~~~l-------------------------------------------------------~~L~~L~L~~ 121 (361)
T 2xot_A 98 N-HLHTLDEFLFSDL-------------------------------------------------------QALEVLLLYN 121 (361)
T ss_dssp S-CCCEECTTTTTTC-------------------------------------------------------TTCCEEECCS
T ss_pred C-cCCcCCHHHhCCC-------------------------------------------------------cCCCEEECCC
Confidence 7 4444432 12223 3344444444
Q ss_pred cCCccC-CccccCCCCccEEEEeccCCCCCCCC--C---CCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcc
Q 035555 603 DCNVIP-KNWIMSLTNLRYLSLSLFKNCEQLLP--L---GKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPK 676 (767)
Q Consensus 603 ~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~l~~--l---~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 676 (767)
|.+..+ |..+..+++|+.|+|++| .+..+|. + ..+++|++|+|++|. ++.++.... ..+++
T Consensus 122 N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~-----------~~l~~ 188 (361)
T 2xot_A 122 NHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDL-----------QKLPA 188 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHH-----------HHSCH
T ss_pred CcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHh-----------hhccH
Confidence 444332 556778899999999987 4555554 3 568999999999886 555553322 25565
Q ss_pred --cceeeccCcc
Q 035555 677 --LRELKFSYME 686 (767)
Q Consensus 677 --L~~L~L~~~~ 686 (767)
|+.|+|++|+
T Consensus 189 ~~l~~l~l~~N~ 200 (361)
T 2xot_A 189 WVKNGLYLHNNP 200 (361)
T ss_dssp HHHTTEECCSSC
T ss_pred hhcceEEecCCC
Confidence 4788888875
No 128
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.13 E-value=2.9e-10 Score=111.31 Aligned_cols=57 Identities=23% Similarity=0.160 Sum_probs=28.9
Q ss_pred CcCceEEEecCCccC-CccccCCCCccEEEEeccCCCCCCC-CCCCCCCCCeeeecCCC
Q 035555 594 NLFDLELRFDCNVIP-KNWIMSLTNLRYLSLSLFKNCEQLL-PLGKLQSLEYLQIGGMH 650 (767)
Q Consensus 594 ~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 650 (767)
+|+.|+|++|....+ |..+..+++|+.|+|++|......| .+..+++|++|+|++|+
T Consensus 106 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 106 SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 333334444433322 4445566666666666653322222 25566666666666655
No 129
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.12 E-value=2.8e-10 Score=112.23 Aligned_cols=148 Identities=18% Similarity=0.127 Sum_probs=104.8
Q ss_pred ccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCcccccccCcCCcCCcccceeE
Q 035555 468 LKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPVGIRELIRLRRVRKFV 547 (767)
Q Consensus 468 L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~ 547 (767)
.+.++.+++. ++.+|..+. ++|++|+|++|......|..+..+++|++|++++| .+..+|...
T Consensus 21 ~~~v~c~~~~-l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~------------- 83 (229)
T 3e6j_A 21 GTTVDCRSKR-HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGV------------- 83 (229)
T ss_dssp TTEEECTTSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT-------------
T ss_pred CCEeEccCCC-cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhh-------------
Confidence 4568888887 888887554 88999999998833434667888999999999988 455544321
Q ss_pred ecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCC-ccccCCCCccEEEEecc
Q 035555 548 VGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPK-NWIMSLTNLRYLSLSLF 626 (767)
Q Consensus 548 ~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~L~L~~~ 626 (767)
+.++++|+.|+|++|.+..+| ..+..+++|+.|+|++|
T Consensus 84 -----------------------------------------~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 122 (229)
T 3e6j_A 84 -----------------------------------------FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122 (229)
T ss_dssp -----------------------------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred -----------------------------------------cccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC
Confidence 112334455555555555454 44568999999999987
Q ss_pred CCCCCCC-CCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCcc
Q 035555 627 KNCEQLL-PLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYME 686 (767)
Q Consensus 627 ~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 686 (767)
. +..+| .+..+++|++|+|++|. ++.++... +..+++|+.|+|++|+
T Consensus 123 ~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~-----------~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 123 K-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGA-----------FDRLSSLTHAYLFGNP 170 (229)
T ss_dssp C-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTT-----------TTTCTTCCEEECTTSC
T ss_pred c-ccccCcccccCCCCCEEECCCCc-CCccCHHH-----------HhCCCCCCEEEeeCCC
Confidence 5 44665 47789999999999986 65555422 2478899999999885
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.11 E-value=1.7e-10 Score=122.39 Aligned_cols=147 Identities=19% Similarity=0.131 Sum_probs=104.4
Q ss_pred ceeeeeccC--CCcccccc-cc-cCCcccEEeecCCccccccc-hhhcCCCCCcEEEccCCccccccCc-ccccCcCCcE
Q 035555 445 KCRRWRCDN--YIKEIPTN-IE-KLIHLKYLNLSSQKKIKRLP-ETLCELYNLECLAISFCTNLRQLPQ-GIGKLRKLMY 518 (767)
Q Consensus 445 ~~L~~l~l~--~~~~lp~~-~~-~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~ 518 (767)
+.++.|+++ .+..++.. +. ++++|++|+|++|. ++.++ ..+.++++|++|+|++|. +..+|. .+..+++|++
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEV 116 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCE
Confidence 447788887 56666644 55 89999999999999 77766 568999999999999998 666665 5789999999
Q ss_pred eeCCCCCCcccc-cccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCc
Q 035555 519 LDNDYTNSLRYL-PVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFD 597 (767)
Q Consensus 519 L~l~~~~~l~~l-p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~ 597 (767)
|++++| .+..+ |..+..+++|+ .
T Consensus 117 L~L~~N-~i~~~~~~~~~~l~~L~-------------------------------------------------------~ 140 (361)
T 2xot_A 117 LLLYNN-HIVVVDRNAFEDMAQLQ-------------------------------------------------------K 140 (361)
T ss_dssp EECCSS-CCCEECTTTTTTCTTCC-------------------------------------------------------E
T ss_pred EECCCC-cccEECHHHhCCcccCC-------------------------------------------------------E
Confidence 999998 44443 33344443333 3
Q ss_pred eEEEecCCccCCccc----cCCCCccEEEEeccCCCCCCCC--CCCCCC--CCeeeecCCC
Q 035555 598 LELRFDCNVIPKNWI----MSLTNLRYLSLSLFKNCEQLLP--LGKLQS--LEYLQIGGMH 650 (767)
Q Consensus 598 L~l~~~~~~~~p~~~----~~l~~L~~L~L~~~~~~~~l~~--l~~l~~--L~~L~L~~~~ 650 (767)
|+|++|.+..+|..+ ..+++|+.|+|++| .++.+|. +..+++ |+.|+|.+|+
T Consensus 141 L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 141 LYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp EECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred EECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCC
Confidence 444444444444433 46899999999987 4555553 556776 4889999987
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.11 E-value=6.9e-10 Score=116.09 Aligned_cols=220 Identities=11% Similarity=0.080 Sum_probs=132.3
Q ss_pred CCCCcEEEccCCccccccCc-ccccCcCCcEeeCCCCCCcccccc-cCcCCcCCcccceeEecC-ccCCCCChhhhhcCC
Q 035555 489 LYNLECLAISFCTNLRQLPQ-GIGKLRKLMYLDNDYTNSLRYLPV-GIRELIRLRRVRKFVVGG-GYDRACSLESLKRLI 565 (767)
Q Consensus 489 l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~~~~~~~-~~~~~~~~~~l~~l~ 565 (767)
|++|+.|+|.. . +..++. .|..|++|+.+++++| .+..++. .+..+.++..+....... .......-..+..+.
T Consensus 100 ~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 100 KQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp CTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 89999999988 4 667766 4788899999999887 4445543 355444444432211000 000000011122233
Q ss_pred CCCC-eeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCCcccc-CCCCccEEEEeccCCCCCCCC--CCCCCCC
Q 035555 566 LLRE-CRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPKNWIM-SLTNLRYLSLSLFKNCEQLLP--LGKLQSL 641 (767)
Q Consensus 566 ~L~~-L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~l~~--l~~l~~L 641 (767)
.|+. +.+.. ...........-....++..+.+.++-.......+. .+++|+.|+|.+| .++.++. +..+++|
T Consensus 177 ~L~~~i~~~~---~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L 252 (329)
T 3sb4_A 177 PLETTIQVGA---MGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYL 252 (329)
T ss_dssp CCEEEEEECT---TCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTC
T ss_pred ccceeEEecC---CCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCC
Confidence 3332 33322 222333333333344566666666542211111111 3789999999976 4666664 8889999
Q ss_pred CeeeecCCCCceEecccccCCCCCCCCccccCCcccc-eeeccCccccccCccCCccccccccCcccceEeeccCccccC
Q 035555 642 EYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLR-ELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKA 720 (767)
Q Consensus 642 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 720 (767)
+.|+|.++ ++.++...+ .++++|+ .|.+.+ +++.+. +..+..+++|+.|+++++ .++.
T Consensus 253 ~~l~l~~n--i~~I~~~aF-----------~~~~~L~~~l~l~~--~l~~I~-----~~aF~~c~~L~~l~l~~n-~i~~ 311 (329)
T 3sb4_A 253 LKIKLPHN--LKTIGQRVF-----------SNCGRLAGTLELPA--SVTAIE-----FGAFMGCDNLRYVLATGD-KITT 311 (329)
T ss_dssp CEEECCTT--CCEECTTTT-----------TTCTTCCEEEEECT--TCCEEC-----TTTTTTCTTEEEEEECSS-CCCE
T ss_pred CEEECCcc--cceehHHHh-----------hCChhccEEEEEcc--cceEEc-----hhhhhCCccCCEEEeCCC-ccCc
Confidence 99999875 777776543 3788999 999976 444443 346778999999999876 6787
Q ss_pred CC-cCCCCCCCCcEEEe
Q 035555 721 LP-DLLLQKTTLQKLHI 736 (767)
Q Consensus 721 lp-~~~~~l~sL~~L~l 736 (767)
++ ..+.++++|+.|+.
T Consensus 312 I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 312 LGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECTTTTCTTCCCCEEEC
T ss_pred cchhhhcCCcchhhhcc
Confidence 77 46778889998864
No 132
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.10 E-value=4.2e-10 Score=110.13 Aligned_cols=62 Identities=16% Similarity=0.059 Sum_probs=33.4
Q ss_pred ccCCCCccEEEEeccCCCCCCC-CCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCc
Q 035555 612 IMSLTNLRYLSLSLFKNCEQLL-PLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYM 685 (767)
Q Consensus 612 ~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 685 (767)
+..+++|++|+|++|......| .+..+++|++|+|++|. ++.++... +..+++|+.|+|++|
T Consensus 101 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-----------~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 101 FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGA-----------FDTLHSLSTLNLLAN 163 (220)
T ss_dssp GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTT-----------TTTCTTCCEEECCSC
T ss_pred hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHH-----------hcCCCCCCEEEecCc
Confidence 4456666666666654332222 25566666666666655 33332211 225666666666665
No 133
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.08 E-value=1.1e-09 Score=114.28 Aligned_cols=184 Identities=14% Similarity=0.116 Sum_probs=117.2
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCC
Q 035555 95 DESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSN 174 (767)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~ 174 (767)
.-.+++|+++.++.+.+++.... .+.+.|+|++|+||||+|+.+++... ...+.. ..+......
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~---------~~~~~~~~~ 82 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELL-GRSYAD---------GVLELNASD 82 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHH---------HEEEECTTS
T ss_pred CHHHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccC---------CEEEecCcc
Confidence 34579999999999999986542 22389999999999999999987411 111110 001111111
Q ss_pred ccchHHHHHHHHHhc-------CCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCchh-H-HhhhcCcceEe
Q 035555 175 FVEFQSLMQHIQKHV-------AGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKET-V-ARIMGSADIIS 245 (767)
Q Consensus 175 ~~~~~~~~~~l~~~l-------~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v-~~~~~~~~~~~ 245 (767)
....+.+.+.+.... .+++.++|+||++......+..+...+.....++++|+||+... + .........+.
T Consensus 83 ~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~ 162 (323)
T 1sxj_B 83 DRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILR 162 (323)
T ss_dssp CCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred ccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEe
Confidence 112333333333322 45689999999977665666677777776666788888887632 2 12223356899
Q ss_pred cCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcc-hHHHHHhH
Q 035555 246 VNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPL-VAKTIASL 298 (767)
Q Consensus 246 l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~~ 298 (767)
+.+++.++..+++...+...+.... .+....|++.++|.|. |+..+...
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 163 YSKLSDEDVLKRLLQIIKLEDVKYT----NDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999876532111111 2346789999999995 45555443
No 134
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.05 E-value=2.4e-10 Score=106.73 Aligned_cols=130 Identities=19% Similarity=0.169 Sum_probs=102.1
Q ss_pred CCCCcCceEEEecCCc--cCCccccCCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCCCceE-ecccccCCCCCCC
Q 035555 591 KKKNLFDLELRFDCNV--IPKNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKR-VGNEFLGVESDTN 667 (767)
Q Consensus 591 ~~~~L~~L~l~~~~~~--~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~-~~~~~~~~~~~~~ 667 (767)
..++|+.|++++|... .+|..+..+++|+.|++++|. ++.++.++.+++|++|++++|. ++. ++..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~--------- 90 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENR-IFGGLDML--------- 90 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCC-CCSCCCHH---------
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCc-CchHHHHH---------
Confidence 3478899999998877 788888889999999999886 5555778899999999999987 443 3321
Q ss_pred CccccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCccccCCCc----CCCCCCCCcEEEecCCCc
Q 035555 668 GSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPD----LLLQKTTLQKLHIWGGCP 741 (767)
Q Consensus 668 ~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~----~~~~l~sL~~L~l~~~c~ 741 (767)
...+++|+.|++++| .++.++. ...+..+++|+.|++++| .+..+|. .+..+++|+.|++ .+|+
T Consensus 91 ---~~~l~~L~~L~Ls~N-~l~~~~~----~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l-~~n~ 158 (168)
T 2ell_A 91 ---AEKLPNLTHLNLSGN-KLKDIST----LEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDG-YDRE 158 (168)
T ss_dssp ---HHHCTTCCEEECBSS-SCCSSGG----GGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETT-EETT
T ss_pred ---HhhCCCCCEEeccCC-ccCcchh----HHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecC-CCCC
Confidence 225899999999998 5655432 124668999999999998 6777775 6788999999999 7774
No 135
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.01 E-value=3.8e-10 Score=105.39 Aligned_cols=137 Identities=16% Similarity=0.091 Sum_probs=90.9
Q ss_pred cCceeeeeccC--CCc--ccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcE
Q 035555 443 LIKCRRWRCDN--YIK--EIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMY 518 (767)
Q Consensus 443 ~~~~L~~l~l~--~~~--~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~ 518 (767)
..+.|+.|+++ .+. .+|..+..+++|++|++++|. ++.+ ..+..+++|++|++++|.....+|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 34567777776 344 677778888888888888888 7666 66888888888888888833337766777888888
Q ss_pred eeCCCCCCccccc--ccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcC
Q 035555 519 LDNDYTNSLRYLP--VGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLF 596 (767)
Q Consensus 519 L~l~~~~~l~~lp--~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~ 596 (767)
|++++| .+..+| ..+..+++|+.|++..+.... ........+..+++|+
T Consensus 100 L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~----------------------------~~~~~~~~~~~l~~L~ 150 (168)
T 2ell_A 100 LNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTN----------------------------LNDYRESVFKLLPQLT 150 (168)
T ss_dssp EECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGT----------------------------STTHHHHHHTTCSSCC
T ss_pred EeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcc----------------------------hHHHHHHHHHhCccCc
Confidence 888888 566654 455666666666443322211 1111113455667777
Q ss_pred ceEEEecCCccCCc
Q 035555 597 DLELRFDCNVIPKN 610 (767)
Q Consensus 597 ~L~l~~~~~~~~p~ 610 (767)
.|+++.|.....|+
T Consensus 151 ~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 151 YLDGYDREDQEAPD 164 (168)
T ss_dssp EETTEETTSCBCCS
T ss_pred EecCCCCChhhccc
Confidence 77777777666554
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.00 E-value=2.6e-10 Score=104.13 Aligned_cols=105 Identities=14% Similarity=0.076 Sum_probs=78.5
Q ss_pred cCceeeeeccC--CCc--ccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcE
Q 035555 443 LIKCRRWRCDN--YIK--EIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMY 518 (767)
Q Consensus 443 ~~~~L~~l~l~--~~~--~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~ 518 (767)
..+.|+.|+++ .+. .+|..++.+++|++|++++|. ++.+ ..+.++++|++|++++|.....+|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 34567777777 344 678888889999999999988 7766 66888999999999998833337777777899999
Q ss_pred eeCCCCCCccccc--ccCcCCcCCcccceeEecC
Q 035555 519 LDNDYTNSLRYLP--VGIRELIRLRRVRKFVVGG 550 (767)
Q Consensus 519 L~l~~~~~l~~lp--~~~~~l~~L~~L~~~~~~~ 550 (767)
|++++| .+..+| ..++.+++|+.|++..+..
T Consensus 93 L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 93 LNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp EECTTS-CCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred EECCCC-cCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 999988 555554 5677777777776554433
No 137
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.00 E-value=1.8e-09 Score=112.69 Aligned_cols=183 Identities=18% Similarity=0.136 Sum_probs=110.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCCc
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSNF 175 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~~ 175 (767)
-.+++|++..++.+..++..... .......|.|+|++|+|||++|+++++.. ...|.. ......
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~~--~~~~~~-------------~~~~~~ 74 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHEL--GVNLRV-------------TSGPAI 74 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHHH--TCCEEE-------------ECTTTC
T ss_pred HHHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHHh--CCCEEE-------------Eecccc
Confidence 35799999999998888753210 01133568899999999999999998732 211111 001111
Q ss_pred cchHHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCC------------------CCcEEEEEcCchh-HHh
Q 035555 176 VEFQSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCL------------------HGSKILITTRKET-VAR 236 (767)
Q Consensus 176 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~ilvTtR~~~-v~~ 236 (767)
....++...+...+ .+..+|++|++..........+...+.... ++.++|.||.... +..
T Consensus 75 ~~~~~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~ 153 (324)
T 1hqc_A 75 EKPGDLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITA 153 (324)
T ss_dssp CSHHHHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSC
T ss_pred CChHHHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCH
Confidence 12223333332212 356689999997766555666666655431 2345666665432 211
Q ss_pred h-hcC-cceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHHhHH
Q 035555 237 I-MGS-ADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIASLL 299 (767)
Q Consensus 237 ~-~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 299 (767)
. ... ...+.+.+++.++..+++...+........ .+....+++.+.|.|-.+..+...+
T Consensus 154 ~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 154 PLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT----EEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp STTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 1 111 257899999999999998877643222111 2446778999999998876665444
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.98 E-value=2.7e-10 Score=107.28 Aligned_cols=135 Identities=17% Similarity=0.166 Sum_probs=105.3
Q ss_pred hccCCCCcCceEEEecCCccCCccccCCCCccEEEEeccCCCCCCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCC
Q 035555 588 ELEKKKNLFDLELRFDCNVIPKNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTN 667 (767)
Q Consensus 588 ~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 667 (767)
.+..+.+|+.|++++|....+|......++|+.|++++|. ++.++.++.+++|++|++++|. ++.++...+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~------- 84 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR-ICRIGEGLD------- 84 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC-CCEECSCHH-------
T ss_pred hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCc-ccccCcchh-------
Confidence 4556788999999999888777644445599999999884 5556789999999999999987 666664332
Q ss_pred CccccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCccccCCCcC----CCCCCCCcEEEecCCCch
Q 035555 668 GSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDL----LLQKTTLQKLHIWGGCPI 742 (767)
Q Consensus 668 ~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~----~~~l~sL~~L~l~~~c~~ 742 (767)
..+++|+.|++++| .+.+++. ...+..+++|+.|++++| .+..+|.. +..+++|+.|++ .+|+.
T Consensus 85 ----~~l~~L~~L~L~~N-~i~~~~~----~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~-~~n~~ 152 (176)
T 1a9n_A 85 ----QALPDLTELILTNN-SLVELGD----LDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDF-QKVKL 152 (176)
T ss_dssp ----HHCTTCCEEECCSC-CCCCGGG----GGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETT-EECCH
T ss_pred ----hcCCCCCEEECCCC-cCCcchh----hHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCC-CcCCH
Confidence 37899999999998 4555442 114668999999999999 56778864 778999999999 66653
No 139
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.95 E-value=3.3e-10 Score=103.37 Aligned_cols=76 Identities=22% Similarity=0.181 Sum_probs=56.6
Q ss_pred cCCcccEEeecCCcccc--ccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCccc-ccccCcCCcCC
Q 035555 464 KLIHLKYLNLSSQKKIK--RLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRY-LPVGIRELIRL 540 (767)
Q Consensus 464 ~l~~L~~L~L~~~~~~~--~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~-lp~~~~~l~~L 540 (767)
..++|+.|++++|. ++ .+|..+..+++|++|++++|. +..+ ..+..+++|++|++++| .+.. +|..++.+++|
T Consensus 15 ~~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 15 TPSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNL 90 (149)
T ss_dssp CGGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTC
T ss_pred CCccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCC
Confidence 34789999999998 66 788888899999999999987 6666 67888999999999988 4443 44444334444
Q ss_pred ccc
Q 035555 541 RRV 543 (767)
Q Consensus 541 ~~L 543 (767)
+.|
T Consensus 91 ~~L 93 (149)
T 2je0_A 91 THL 93 (149)
T ss_dssp CEE
T ss_pred CEE
Confidence 444
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.93 E-value=2.5e-10 Score=132.05 Aligned_cols=104 Identities=24% Similarity=0.168 Sum_probs=78.9
Q ss_pred ccCceeeeeccC--CCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEe
Q 035555 442 KLIKCRRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYL 519 (767)
Q Consensus 442 ~~~~~L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L 519 (767)
..++.|+.|+++ .+..+|..+.++++|++|+|++|. ++.+|..+++|++|++|+|++|. +..+|..++.|++|++|
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYF 298 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEE
T ss_pred ccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEE
Confidence 356677777777 455677777788888888888887 66888778888888888888887 66778888888888888
Q ss_pred eCCCCCCcccccccCcCCcCCcccceeEe
Q 035555 520 DNDYTNSLRYLPVGIRELIRLRRVRKFVV 548 (767)
Q Consensus 520 ~l~~~~~l~~lp~~~~~l~~L~~L~~~~~ 548 (767)
++++| .+..+|..++.+++|+.|++..+
T Consensus 299 ~L~~N-~l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 299 YFFDN-MVTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp ECCSS-CCCCCCSSTTSCTTCCCEECTTS
T ss_pred ECCCC-CCCccChhhhcCCCccEEeCCCC
Confidence 88877 66777777777777777755433
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.90 E-value=4e-09 Score=100.68 Aligned_cols=52 Identities=15% Similarity=0.273 Sum_probs=28.5
Q ss_pred cEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcc--cccCcCCcEeeCCCC
Q 035555 469 KYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQG--IGKLRKLMYLDNDYT 524 (767)
Q Consensus 469 ~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~--~~~l~~L~~L~l~~~ 524 (767)
++++++++. ++.+|..+.. +|++|++++|. +..+|.. +..+++|++|++++|
T Consensus 11 ~~l~~s~~~-l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N 64 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRN 64 (192)
T ss_dssp TEEECTTSC-CSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSS
T ss_pred CEEEcCCCC-cCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCC
Confidence 455566555 5555554432 56666666655 4444432 555666666666655
No 142
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.90 E-value=1.3e-08 Score=106.17 Aligned_cols=182 Identities=13% Similarity=0.085 Sum_probs=114.7
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCCc
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSNF 175 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~~ 175 (767)
-.+++|+++.++.+..++... ..+.+.|+|++|+||||+|+.+++... ...+.. ..+.......
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~---------~~~~~~~~~~ 87 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELF-GENWRH---------NFLELNASDE 87 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHH---------HEEEEETTCH
T ss_pred HHHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccC---------ceEEeecccc
Confidence 456999999999999988754 233489999999999999999987411 111100 0000000000
Q ss_pred cchHHHHHHHHHh-----c-CCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCchhH--HhhhcCcceEecC
Q 035555 176 VEFQSLMQHIQKH-----V-AGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKETV--ARIMGSADIISVN 247 (767)
Q Consensus 176 ~~~~~~~~~l~~~-----l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v--~~~~~~~~~~~l~ 247 (767)
...+.+...+... + .+++.++|+|+++......+..+...+.....++++|+||....- .........+.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~ 167 (327)
T 1iqp_A 88 RGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFR 167 (327)
T ss_dssp HHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECC
T ss_pred CchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEec
Confidence 0111111112211 1 256889999999876666777788888776677888888876421 1112234578999
Q ss_pred CCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHHh
Q 035555 248 VLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIAS 297 (767)
Q Consensus 248 ~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 297 (767)
+++.++..+++...+...+.... .+....|++.++|.|..+..+..
T Consensus 168 ~l~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 168 PLRDEDIAKRLRYIAENEGLELT----EEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp CCCHHHHHHHHHHHHHTTTCEEC----HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHCCCCHHHHHHHHH
Confidence 99999999999877543222111 23467788899999986554443
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.90 E-value=1.6e-09 Score=101.95 Aligned_cols=102 Identities=18% Similarity=0.119 Sum_probs=66.7
Q ss_pred cCceeeeeccC--CCcccccccccCC-cccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCccc-ccCcCCcE
Q 035555 443 LIKCRRWRCDN--YIKEIPTNIEKLI-HLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGI-GKLRKLMY 518 (767)
Q Consensus 443 ~~~~L~~l~l~--~~~~lp~~~~~l~-~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~-~~l~~L~~ 518 (767)
.+..|+.|+++ .+..+|. +..+. +|++|++++|. ++.+ ..+.++++|++|++++|. +..+|..+ ..+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCE
Confidence 34566777766 3455543 44444 78888888877 6666 457777788888888777 66666554 77778888
Q ss_pred eeCCCCCCcccccc--cCcCCcCCcccceeEec
Q 035555 519 LDNDYTNSLRYLPV--GIRELIRLRRVRKFVVG 549 (767)
Q Consensus 519 L~l~~~~~l~~lp~--~~~~l~~L~~L~~~~~~ 549 (767)
|++++| .+..+|. .++.+++|+.|.+..+.
T Consensus 93 L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 93 LILTNN-SLVELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp EECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred EECCCC-cCCcchhhHhhhcCCCCCEEEecCCC
Confidence 888777 5566664 55666666666554433
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.89 E-value=7.3e-09 Score=98.84 Aligned_cols=52 Identities=15% Similarity=0.263 Sum_probs=28.4
Q ss_pred cEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCC
Q 035555 469 KYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYT 524 (767)
Q Consensus 469 ~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~ 524 (767)
++++++++. ++.+|..+. ++|++|++++|. +..+|..+..+++|++|++++|
T Consensus 13 ~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N 64 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNN 64 (193)
T ss_dssp TEEECTTSC-CSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSS
T ss_pred CEEEcCCCC-CCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCC
Confidence 345555555 555554332 455566665555 4555555555556666666555
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.83 E-value=3.9e-11 Score=115.48 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=23.3
Q ss_pred cchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCC
Q 035555 482 LPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYT 524 (767)
Q Consensus 482 lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~ 524 (767)
+|..+.++++|++|++++|. +..+| .+..+++|++|++++|
T Consensus 40 l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n 80 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRN 80 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEE
T ss_pred hhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCC
Confidence 33355566666666666555 44455 5555566666666555
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.82 E-value=9.3e-09 Score=107.45 Aligned_cols=213 Identities=14% Similarity=0.038 Sum_probs=134.2
Q ss_pred CCcccEEeecCCccccccc-hhhcCCCCCcEEEccCCccccccCc-ccccCcCCcEeeCCCCC---Cccccc-ccCcCCc
Q 035555 465 LIHLKYLNLSSQKKIKRLP-ETLCELYNLECLAISFCTNLRQLPQ-GIGKLRKLMYLDNDYTN---SLRYLP-VGIRELI 538 (767)
Q Consensus 465 l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~---~l~~lp-~~~~~l~ 538 (767)
+.+|+.|+|.. . ++.++ .++.+|++|+.|++.+|. +..++. .|..+.++..+...... ....+. ..+..+.
T Consensus 100 ~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 100 KQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp CTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 99999999999 5 77777 458899999999999987 545554 56777777777765421 001111 1222333
Q ss_pred CCcccceeEecCccCCCCChhh-----hhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCCcc-c
Q 035555 539 RLRRVRKFVVGGGYDRACSLES-----LKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPKNW-I 612 (767)
Q Consensus 539 ~L~~L~~~~~~~~~~~~~~~~~-----l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~ 612 (767)
.|+..- .... ...+.. .....++..+.+.+. +.. .........+++|+.++|+.|....+|.. +
T Consensus 177 ~L~~~i--~~~~----~~~l~~~~~~~~~~~~~~~~l~~~~~--l~~--~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF 246 (329)
T 3sb4_A 177 PLETTI--QVGA----MGKLEDEIMKAGLQPRDINFLTIEGK--LDN--ADFKLIRDYMPNLVSLDISKTNATTIPDFTF 246 (329)
T ss_dssp CCEEEE--EECT----TCCHHHHHHHTTCCGGGCSEEEEEEC--CCH--HHHHHHHHHCTTCCEEECTTBCCCEECTTTT
T ss_pred ccceeE--EecC----CCcHHHHHhhcccCccccceEEEeee--ecH--HHHHHHHHhcCCCeEEECCCCCcceecHhhh
Confidence 333110 0110 011111 112344445555431 111 11111122478999999999887766654 5
Q ss_pred cCCCCccEEEEeccCCCCCCCC--CCCCCCCC-eeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccc
Q 035555 613 MSLTNLRYLSLSLFKNCEQLLP--LGKLQSLE-YLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELE 689 (767)
Q Consensus 613 ~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~-~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 689 (767)
..+++|+.|+|.++ ++.++. +.++++|+ .+++.+ .++.++...+ .+|++|+.|++.++ +++
T Consensus 247 ~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF-----------~~c~~L~~l~l~~n-~i~ 310 (329)
T 3sb4_A 247 AQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAF-----------MGCDNLRYVLATGD-KIT 310 (329)
T ss_dssp TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTT-----------TTCTTEEEEEECSS-CCC
T ss_pred hCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhh-----------hCCccCCEEEeCCC-ccC
Confidence 68999999999975 666664 88999999 999987 5778775433 38899999999766 455
Q ss_pred cCccCCccccccccCcccceEe
Q 035555 690 EWDFGTATKGEIIIMPRLSCLI 711 (767)
Q Consensus 690 ~~~~~~~~~~~~~~~~~L~~L~ 711 (767)
.+.. ..+..+++|+.+.
T Consensus 311 ~I~~-----~aF~~~~~L~~ly 327 (329)
T 3sb4_A 311 TLGD-----ELFGNGVPSKLIY 327 (329)
T ss_dssp EECT-----TTTCTTCCCCEEE
T ss_pred ccch-----hhhcCCcchhhhc
Confidence 4433 3566788888875
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.81 E-value=1.5e-10 Score=111.40 Aligned_cols=114 Identities=21% Similarity=0.233 Sum_probs=86.1
Q ss_pred CCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCccccccc
Q 035555 454 YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLPVG 533 (767)
Q Consensus 454 ~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~ 533 (767)
.++.+|..++.+++|++|++++|. ++.+| .+.++++|++|++++|. +..+|..+..+++|++|++++| .+..+| .
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~ 110 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN-QIASLS-G 110 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEE-ECCCHH-H
T ss_pred cHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCC-cCCcCC-c
Confidence 355677799999999999999998 88888 79999999999999998 7789988888899999999998 666666 5
Q ss_pred CcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeC
Q 035555 534 IRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHG 574 (767)
Q Consensus 534 ~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~ 574 (767)
++.+++|+.|++..+.... ...+..+..+++|+.|.+.+
T Consensus 111 ~~~l~~L~~L~l~~N~i~~--~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNKITN--WGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp HHHHHHSSEEEESEEECCC--HHHHHHHTTTTTCSEEEECS
T ss_pred cccCCCCCEEECCCCcCCc--hhHHHHHhcCCCCCEEEecC
Confidence 7777777777766554432 11112344555555555544
No 148
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.81 E-value=4.2e-09 Score=121.86 Aligned_cols=80 Identities=24% Similarity=0.349 Sum_probs=43.4
Q ss_pred cCceeeeeccC--CCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEee
Q 035555 443 LIKCRRWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLD 520 (767)
Q Consensus 443 ~~~~L~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~ 520 (767)
.++.|+.|+++ .+..+|..|++|++|++|+|++|. ++.+|..+++|++|++|+|++|. +..+|..|+.|++|++|+
T Consensus 245 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLG 322 (727)
T ss_dssp GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEE
T ss_pred CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEe
Confidence 34455555554 344555555555555555555555 44555555555555555555554 445555555555555555
Q ss_pred CCCC
Q 035555 521 NDYT 524 (767)
Q Consensus 521 l~~~ 524 (767)
+++|
T Consensus 323 L~~N 326 (727)
T 4b8c_D 323 VEGN 326 (727)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 5555
No 149
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.76 E-value=1.9e-08 Score=95.94 Aligned_cols=119 Identities=13% Similarity=0.139 Sum_probs=66.8
Q ss_pred CceEEEecCCccCCccccCCCCccEEEEeccCCCCCCCC---CCCCCCCCeeeecCCCCceEecccccCCCCCCCCcccc
Q 035555 596 FDLELRFDCNVIPKNWIMSLTNLRYLSLSLFKNCEQLLP---LGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVI 672 (767)
Q Consensus 596 ~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~---l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 672 (767)
+.++++++....+|..+. .+|+.|++++|. +..+++ ++.+++|++|+|++|. ++.+.... +.
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-----------~~ 75 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNA-----------FE 75 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTT-----------TT
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCC-CCCcCHhH-----------cC
Confidence 345555555555555433 366777777663 333332 5567777777777665 33332111 23
Q ss_pred CCcccceeeccCccccccCccCCccccccccCcccceEeeccCcccc-CCCcCCCCCCCCcEEEe
Q 035555 673 AFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLK-ALPDLLLQKTTLQKLHI 736 (767)
Q Consensus 673 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~lp~~~~~l~sL~~L~l 736 (767)
.+++|++|+|++| .++.+. +..+..+++|+.|++++| .++ ..|..+..+++|+.|++
T Consensus 76 ~l~~L~~L~Ls~N-~l~~~~-----~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 76 GASHIQELQLGEN-KIKEIS-----NKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp TCTTCCEEECCSC-CCCEEC-----SSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEEC
T ss_pred CcccCCEEECCCC-cCCccC-----HHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEe
Confidence 5667777777766 343332 223456677777777776 344 34566666777777777
No 150
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.75 E-value=5.7e-08 Score=103.46 Aligned_cols=191 Identities=15% Similarity=0.177 Sum_probs=115.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhh---h-HHHHHHHHHHHh----
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILR---K-EYGIARAIIEAL---- 168 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~-~~~i~~~i~~~l---- 168 (767)
.+++||++.++.+...+.... ....+.|+|++|+||||+|+.+.+...-...+. + .......+....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 90 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSC
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCce
Confidence 469999999999999986542 234788999999999999999976421111000 0 000011111000
Q ss_pred ---hCC-CCCccchHHHHHHHHHh-cCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCchh-H-HhhhcCc
Q 035555 169 ---TYS-SSNFVEFQSLMQHIQKH-VAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKET-V-ARIMGSA 241 (767)
Q Consensus 169 ---~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v-~~~~~~~ 241 (767)
... .....+..++...+... ..+++.++|+||++..+......+...+.....+..+|++|.... + .......
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~ 170 (373)
T 1jr3_A 91 IEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 (373)
T ss_dssp EEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTS
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhhe
Confidence 000 01112222332222211 135678999999977666677778887776556677777776432 2 2223345
Q ss_pred ceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHH
Q 035555 242 DIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIA 296 (767)
Q Consensus 242 ~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 296 (767)
..+.+.+++.++..+++...+...+.... .+....|++.++|.|..+..+.
T Consensus 171 ~~i~~~~l~~~~~~~~l~~~~~~~~~~~~----~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 171 LQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHSSSCHHHHHHHH
T ss_pred eEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHCCCCHHHHHHHH
Confidence 78999999999999999876422111111 2346779999999998776554
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.75 E-value=5e-07 Score=96.51 Aligned_cols=261 Identities=13% Similarity=0.146 Sum_probs=158.3
Q ss_pred CCcccc-cccccCCcccEEeecCCccccccch-hhcCCCCCcEEEccCCccccccCc-ccccCcCCcEeeCCCCCCcccc
Q 035555 454 YIKEIP-TNIEKLIHLKYLNLSSQKKIKRLPE-TLCELYNLECLAISFCTNLRQLPQ-GIGKLRKLMYLDNDYTNSLRYL 530 (767)
Q Consensus 454 ~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~l 530 (767)
.++.++ ..|.++ +|+.+.+..+ ++.++. ++.++ +|+.+.+.. .+..++. .|..|++|+.+++..| .+..+
T Consensus 123 ~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I 195 (401)
T 4fdw_A 123 SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT-KITKL 195 (401)
T ss_dssp TCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTS-CCSEE
T ss_pred ccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeeecCCC-cceEe
Confidence 344454 345554 6888877665 555553 35553 688888775 2555554 4677888888888776 56666
Q ss_pred cccCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCCc
Q 035555 531 PVGIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPKN 610 (767)
Q Consensus 531 p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~ 610 (767)
|.+.-...+|+.+.+-. ... ...-..+..+++|+.+.+.. ++.... ...+.+ .+|+.+.+..+-....+.
T Consensus 196 ~~~aF~~~~L~~l~lp~-~l~---~I~~~aF~~~~~L~~l~l~~--~l~~I~---~~aF~~-~~L~~i~lp~~i~~I~~~ 265 (401)
T 4fdw_A 196 PASTFVYAGIEEVLLPV-TLK---EIGSQAFLKTSQLKTIEIPE--NVSTIG---QEAFRE-SGITTVKLPNGVTNIASR 265 (401)
T ss_dssp CTTTTTTCCCSEEECCT-TCC---EECTTTTTTCTTCCCEECCT--TCCEEC---TTTTTT-CCCSEEEEETTCCEECTT
T ss_pred chhhEeecccCEEEeCC-chh---eehhhHhhCCCCCCEEecCC--CccCcc---cccccc-CCccEEEeCCCccEEChh
Confidence 65533345666554321 111 11223455666677766643 121111 123444 578888885433334455
Q ss_pred cccCCCCccEEEEeccCCC----CCCC--CCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccC
Q 035555 611 WIMSLTNLRYLSLSLFKNC----EQLL--PLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSY 684 (767)
Q Consensus 611 ~~~~l~~L~~L~L~~~~~~----~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 684 (767)
.+..+++|+.+.+.++... ..++ .+..+++|+.+.|.+ +++.++...+ .+|++|+.|.|..
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF-----------~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLL-----------GGNRKVTQLTIPA 332 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTT-----------TTCCSCCEEEECT
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhh-----------cCCCCccEEEECc
Confidence 6778999999999876432 1233 378899999999974 3777776443 3788999999965
Q ss_pred ccccccCccCCccccccccCcccceEeeccCccccCCC-cCCCCC-CCCcEEEecCCCchhHHhhcccCCCCCCcc
Q 035555 685 MEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALP-DLLLQK-TTLQKLHIWGGCPIFRERYREETGEDWPKI 758 (767)
Q Consensus 685 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l-~sL~~L~l~~~c~~l~~~~~~~~~~~~~~i 758 (767)
+ ++.+.. ..+..+ +|+.|.+.++ .+..++ ..+..+ .+++.|++..+ ..+.++. ...|...
T Consensus 333 ~--l~~I~~-----~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~---~~~~y~~--a~~W~~f 394 (401)
T 4fdw_A 333 N--VTQINF-----SAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAE---SVEKYKN--ANGWRDF 394 (401)
T ss_dssp T--CCEECT-----TSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGG---GHHHHHH--STTGGGG
T ss_pred c--ccEEcH-----HhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHH---HHHHhhh--ccchhhh
Confidence 3 444432 356677 9999999998 455555 445555 47889999332 2344443 3457544
No 152
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.74 E-value=2.9e-08 Score=94.62 Aligned_cols=95 Identities=20% Similarity=0.259 Sum_probs=69.7
Q ss_pred eeccC--CCcccccccccCCcccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCc-ccccCcCCcEeeCCCCC
Q 035555 449 WRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQ-GIGKLRKLMYLDNDYTN 525 (767)
Q Consensus 449 ~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~ 525 (767)
+++++ .+..+|..+. ..|++|++++|. ++.+|..+.++++|++|+|++|. +..++. .|..+++|++|++++|
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N- 88 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYN- 88 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCC-
Confidence 34444 5667776654 578888888888 78888888888889999998888 555554 5788888888888888
Q ss_pred Ccccccc-cCcCCcCCcccceeEe
Q 035555 526 SLRYLPV-GIRELIRLRRVRKFVV 548 (767)
Q Consensus 526 ~l~~lp~-~~~~l~~L~~L~~~~~ 548 (767)
.+..++. .+..+++|+.|++..+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred ccCEeCHHHhCCCCCCCEEECCCC
Confidence 5555554 4777777777765443
No 153
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.73 E-value=5.9e-08 Score=91.18 Aligned_cols=123 Identities=20% Similarity=0.189 Sum_probs=84.6
Q ss_pred CceEEEecCCccCCccccCCCCccEEEEeccCCCCCCCC--CCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccC
Q 035555 596 FDLELRFDCNVIPKNWIMSLTNLRYLSLSLFKNCEQLLP--LGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIA 673 (767)
Q Consensus 596 ~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~ 673 (767)
+.++++.+....+|..+ .++|+.|++++|. +..++. ++.+++|++|++++|. ++.++... +..
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-----------~~~ 74 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGV-----------FDK 74 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTT-----------TTT
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCc-ceEeChhH-----------ccC
Confidence 44555566655666433 3688889988875 444443 6788899999998876 55544332 237
Q ss_pred CcccceeeccCccccccCccCCccccccccCcccceEeeccCccccCCCcC-CCCCCCCcEEEecCCCc
Q 035555 674 FPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKALPDL-LLQKTTLQKLHIWGGCP 741 (767)
Q Consensus 674 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-~~~l~sL~~L~l~~~c~ 741 (767)
+++|+.|++++| .++.++ +..+..+++|+.|++++| .++.+|.. +..+++|+.|++ .+++
T Consensus 75 l~~L~~L~l~~N-~l~~~~-----~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l-~~N~ 135 (177)
T 2o6r_A 75 LTKLTILYLHEN-KLQSLP-----NGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWL-HTNP 135 (177)
T ss_dssp CTTCCEEECCSS-CCCCCC-----TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC-CSSC
T ss_pred CCccCEEECCCC-CccccC-----HHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEe-cCCC
Confidence 888999999887 454433 224567889999999988 67777754 467889999998 6554
No 154
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.72 E-value=6.4e-08 Score=100.55 Aligned_cols=182 Identities=10% Similarity=0.032 Sum_probs=110.8
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCC-CC
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSS-SN 174 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~-~~ 174 (767)
-.+++|++..++.+.+++... ..+.+.++|++|+|||++|+.+++... ...+.. .+ -.+.... ..
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~------~~-~~~~~~~~~~ 81 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRD------NF-IEMNASDERG 81 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHH------HC-EEEETTSTTC
T ss_pred HHHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccC------Ce-EEEeCccccC
Confidence 456999999999998887543 223389999999999999999987410 111100 00 0000010 01
Q ss_pred ccchHHHHHHHHHh--c-CCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCchh-H-HhhhcCcceEecCCC
Q 035555 175 FVEFQSLMQHIQKH--V-AGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKET-V-ARIMGSADIISVNVL 249 (767)
Q Consensus 175 ~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v-~~~~~~~~~~~l~~L 249 (767)
.............. + .+++.++|+|+++.........+...+.....++++|+||.... + .........+.+.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~ 161 (319)
T 2chq_A 82 IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPV 161 (319)
T ss_dssp TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCC
T ss_pred hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCC
Confidence 11122222222211 1 25688999999976655555666666665556777888876543 2 122233568999999
Q ss_pred ChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHH
Q 035555 250 SETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTI 295 (767)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 295 (767)
+.++..+++...+...+.... .+....+++.++|.+..+...
T Consensus 162 ~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 162 PKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp CHHHHHHHHHHHHHTTCCCBC----HHHHHHHHHTTTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 999999999877543222112 234677888999998765433
No 155
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.66 E-value=1.2e-07 Score=89.06 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=30.9
Q ss_pred ccEEeecCCccccccchhhcCCCCCcEEEccCCccccccCc-ccccCcCCcEeeCCCC
Q 035555 468 LKYLNLSSQKKIKRLPETLCELYNLECLAISFCTNLRQLPQ-GIGKLRKLMYLDNDYT 524 (767)
Q Consensus 468 L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~ 524 (767)
.+.++++++. ++.+|..+ .++|++|++++|. +..+|. .+..+++|++|++++|
T Consensus 9 ~~~l~~~~~~-l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 62 (177)
T 2o6r_A 9 GTEIRCNSKG-LTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN 62 (177)
T ss_dssp TTEEECCSSC-CSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS
T ss_pred CCEEEecCCC-CccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC
Confidence 3456666665 55666433 2566666666665 444444 3456666666666665
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.64 E-value=5.4e-08 Score=90.99 Aligned_cols=97 Identities=25% Similarity=0.345 Sum_probs=76.8
Q ss_pred eeccC--CCcccccccccCCcccEEeecCCcccccc-chhhcCCCCCcEEEccCCccccccCcc-cccCcCCcEeeCCCC
Q 035555 449 WRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRL-PETLCELYNLECLAISFCTNLRQLPQG-IGKLRKLMYLDNDYT 524 (767)
Q Consensus 449 ~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~~L~l~~~ 524 (767)
.++++ .++.+|..+. ++|++|+|++|. ++.+ |..+.++++|++|+|++|. +..+|.. +..+++|++|++++|
T Consensus 16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC
Confidence 44554 5678887775 899999999999 6666 5678899999999999997 7778875 578999999999998
Q ss_pred CCccccccc-CcCCcCCcccceeEecC
Q 035555 525 NSLRYLPVG-IRELIRLRRVRKFVVGG 550 (767)
Q Consensus 525 ~~l~~lp~~-~~~l~~L~~L~~~~~~~ 550 (767)
.+..+|.. ++.+++|+.|.+..+..
T Consensus 92 -~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 92 -HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp -CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred -ccceeCHHHhccccCCCEEEeCCCCc
Confidence 67777765 77888888886655443
No 157
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.63 E-value=2.2e-07 Score=94.61 Aligned_cols=161 Identities=9% Similarity=-0.026 Sum_probs=96.1
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhh------hhhh----------HHHHH
Q 035555 98 EIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKK------ILRK----------EYGIA 161 (767)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~------~F~~----------~~~i~ 161 (767)
.+.|||+++++|...|...-. ......+.|+|++|+|||++|++|++...... .|.. ...+.
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 378999999999988765421 23566889999999999999999988532110 1221 56778
Q ss_pred HHHHHHhhCCCCCcc-chHHHHHHHHHh--cCCCeEEEEEeCCCCcChhhHHHHHHhhh--cCCCC-cEEEEEcCchhH-
Q 035555 162 RAIIEALTYSSSNFV-EFQSLMQHIQKH--VAGKKLLLVLDDVWNEDFYKWEQFYNCLK--TCLHG-SKILITTRKETV- 234 (767)
Q Consensus 162 ~~i~~~l~~~~~~~~-~~~~~~~~l~~~--l~~k~~LlVlDdv~~~~~~~~~~l~~~l~--~~~~g-s~ilvTtR~~~v- 234 (767)
..|++++.+...... ..+.+...+... -.++++++|||+++.-. .-+.+...+. ....+ ..||.++...+.
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 888888865432211 222333333322 24678999999996543 2233333332 11111 223333433211
Q ss_pred Hhhh-----cC--cceEecCCCChhHHHHHHHHhc
Q 035555 235 ARIM-----GS--ADIISVNVLSETECWLVFESLG 262 (767)
Q Consensus 235 ~~~~-----~~--~~~~~l~~L~~~~~~~l~~~~~ 262 (767)
...+ .. ...+...+.+.++-.+++.+++
T Consensus 177 ~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 177 REQINIMPSLKAHFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHH
Confidence 1111 11 2478999999999999988775
No 158
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.62 E-value=6.5e-07 Score=93.74 Aligned_cols=180 Identities=15% Similarity=0.179 Sum_probs=107.6
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCC
Q 035555 95 DESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSN 174 (767)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~ 174 (767)
.-.+++|++..++++..++..... .......|.|+|++|+|||++|+++++. ....|-. + ....
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~~~-----------~--~~~~ 90 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSANIKT-----------T--AAPM 90 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCEEE-----------E--EGGG
T ss_pred CHHHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCeEE-----------e--cchh
Confidence 345799999999999988865311 0124456899999999999999999873 2222211 0 0000
Q ss_pred ccchHHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCC------------------CCcEEEEEcCchh-HH
Q 035555 175 FVEFQSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCL------------------HGSKILITTRKET-VA 235 (767)
Q Consensus 175 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~ilvTtR~~~-v~ 235 (767)
..........+.. ..+..+|+||++..........+...+.... ++..+|.||.... +.
T Consensus 91 ~~~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~ 168 (338)
T 3pfi_A 91 IEKSGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLS 168 (338)
T ss_dssp CCSHHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSC
T ss_pred ccchhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccC
Confidence 0111222222222 2456789999997666555666666665432 1245555555422 11
Q ss_pred h-hhcC-cceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHH
Q 035555 236 R-IMGS-ADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIA 296 (767)
Q Consensus 236 ~-~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 296 (767)
. .... ...+.+.+++.++...++.+.+....... ..+....|++.+.|.|-.+..+.
T Consensus 169 ~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~----~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 169 NPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTC----EEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEE----CHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHCcCHHHHHHHH
Confidence 1 1122 36899999999999999987753222111 13446778888999985554433
No 159
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.59 E-value=8.8e-08 Score=89.20 Aligned_cols=98 Identities=24% Similarity=0.300 Sum_probs=77.3
Q ss_pred eeeccC--CCcccccccccCCcccEEeecCCcccccc-chhhcCCCCCcEEEccCCccccccCcc-cccCcCCcEeeCCC
Q 035555 448 RWRCDN--YIKEIPTNIEKLIHLKYLNLSSQKKIKRL-PETLCELYNLECLAISFCTNLRQLPQG-IGKLRKLMYLDNDY 523 (767)
Q Consensus 448 ~~l~l~--~~~~lp~~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~~L~l~~ 523 (767)
+.++++ .++.+|..+. ++|++|+|++|. ++.+ |..+.++++|++|+|++|. +..+|.. +..+++|++|++++
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCC
Confidence 455555 5777887764 889999999999 7766 5678899999999999998 7777765 58899999999999
Q ss_pred CCCccccccc-CcCCcCCcccceeEecC
Q 035555 524 TNSLRYLPVG-IRELIRLRRVRKFVVGG 550 (767)
Q Consensus 524 ~~~l~~lp~~-~~~l~~L~~L~~~~~~~ 550 (767)
| .+..+|.. +..+++|+.|.+..+..
T Consensus 88 N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 88 N-QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred C-ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 8 67777764 77888888887655443
No 160
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.59 E-value=1e-06 Score=94.07 Aligned_cols=232 Identities=12% Similarity=0.048 Sum_probs=155.3
Q ss_pred eeeeeccC-CCcccc-cccccCCcccEEeecCCccccccc-hhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCC
Q 035555 446 CRRWRCDN-YIKEIP-TNIEKLIHLKYLNLSSQKKIKRLP-ETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDND 522 (767)
Q Consensus 446 ~L~~l~l~-~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~ 522 (767)
.|+.+.+. .+..++ ..|.+ ..|+.+.+.. . ++.++ ..+.+|.+|+.+++.+|. +..+|.....+.+|+.+.+.
T Consensus 136 ~L~~i~l~~~i~~I~~~aF~~-~~L~~i~lp~-~-l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEGLKSIGDMAFFN-STVQEIVFPS-T-LEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTTCCEECTTTTTT-CCCCEEECCT-T-CCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCCccEECHHhcCC-CCceEEEeCC-C-ccEehHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeC
Confidence 46666665 466665 34656 4699999986 3 66665 568889999999999877 78888765557899999998
Q ss_pred CCCCcccccc-cCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEE
Q 035555 523 YTNSLRYLPV-GIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELR 601 (767)
Q Consensus 523 ~~~~l~~lp~-~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 601 (767)
.+ +..++. .+..+.+|+.+.+-. ....... ..+.. .+|+.+.+.. ++. ......+.+|++|+.+.+.
T Consensus 212 ~~--l~~I~~~aF~~~~~L~~l~l~~-~l~~I~~---~aF~~-~~L~~i~lp~--~i~---~I~~~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 212 VT--LKEIGSQAFLKTSQLKTIEIPE-NVSTIGQ---EAFRE-SGITTVKLPN--GVT---NIASRAFYYCPELAEVTTY 279 (401)
T ss_dssp TT--CCEECTTTTTTCTTCCCEECCT-TCCEECT---TTTTT-CCCSEEEEET--TCC---EECTTTTTTCTTCCEEEEE
T ss_pred Cc--hheehhhHhhCCCCCCEEecCC-CccCccc---ccccc-CCccEEEeCC--Ccc---EEChhHhhCCCCCCEEEeC
Confidence 54 566653 467777887775432 1111111 12233 4566666643 111 1223568889999999998
Q ss_pred ecCCc------cCCccccCCCCccEEEEeccCCCCCCCC--CCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccC
Q 035555 602 FDCNV------IPKNWIMSLTNLRYLSLSLFKNCEQLLP--LGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIA 673 (767)
Q Consensus 602 ~~~~~------~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~ 673 (767)
.+... ..+..+..|++|+.+.|.+ .++.++. +.++++|+.+.|..+ ++.++...+ .+
T Consensus 280 ~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF-----------~~ 344 (401)
T 4fdw_A 280 GSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAF-----------NN 344 (401)
T ss_dssp SSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSS-----------SS
T ss_pred CccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhC-----------CC
Confidence 87654 4556677899999999984 3555553 788999999999653 777765433 36
Q ss_pred CcccceeeccCccccccCccCCccccccccCc-ccceEeeccC
Q 035555 674 FPKLRELKFSYMEELEEWDFGTATKGEIIIMP-RLSCLIIFGC 715 (767)
Q Consensus 674 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~-~L~~L~l~~c 715 (767)
+ +|+.|.+.++ .+..+. .+.+..++ .++.|.+...
T Consensus 345 ~-~L~~l~l~~n-~~~~l~-----~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 345 T-GIKEVKVEGT-TPPQVF-----EKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp S-CCCEEEECCS-SCCBCC-----CSSCCCSCTTCCEEEECGG
T ss_pred C-CCCEEEEcCC-CCcccc-----cccccCCCCCccEEEeCHH
Confidence 7 9999999987 343332 22344554 6788888764
No 161
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.53 E-value=4.8e-07 Score=95.43 Aligned_cols=181 Identities=10% Similarity=0.064 Sum_probs=108.8
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCC
Q 035555 95 DESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSN 174 (767)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~ 174 (767)
.-.+++|+++.++.+..++.... ...+.|+|++|+||||+|+.+.+.......+.. .........
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---------~~~~~~~~~ 99 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKS---------RILELNASD 99 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT---------SEEEECSSS
T ss_pred CHHHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCccccc---------ceEEEcccc
Confidence 34579999999999999986532 223899999999999999999874211100100 000000000
Q ss_pred ccchHHHHHHHHH----------------hcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCchh-H-Hh
Q 035555 175 FVEFQSLMQHIQK----------------HVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKET-V-AR 236 (767)
Q Consensus 175 ~~~~~~~~~~l~~----------------~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v-~~ 236 (767)
......+...+.. .-.++.-++++|++..........+...+.......++|++|.... + ..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~ 179 (353)
T 1sxj_D 100 ERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDP 179 (353)
T ss_dssp CCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred ccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcch
Confidence 0111111111111 1123556999999976665566677777776656677777775432 2 11
Q ss_pred hhcCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHH
Q 035555 237 IMGSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKT 294 (767)
Q Consensus 237 ~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 294 (767)
.......+.+.+++.++....+...+........ .+..+.|++.++|.|..+..
T Consensus 180 l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 180 LASQCSKFRFKALDASNAIDRLRFISEQENVKCD----DGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp HHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHTSSCHHHHHH
T ss_pred hhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 1222458899999999999998876533222111 24577899999999876443
No 162
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.53 E-value=3e-07 Score=87.41 Aligned_cols=147 Identities=13% Similarity=0.090 Sum_probs=80.8
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccch--------hhh-hhh-HHHHHHHHH
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDV--------KKI-LRK-EYGIARAII 165 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~--------~~~-F~~-~~~i~~~i~ 165 (767)
-..++||+++++++.+.+... ..+.+.|+|++|+|||++|+.+++...- ... +.. ...+
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 89 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL----- 89 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHH-----
T ss_pred ccccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHH-----
Confidence 346899999999999998653 3456889999999999999999874210 000 000 1110
Q ss_pred HHhhCCCCCccchHHHHHHHHHhc--CCCeEEEEEeCCCCcC--------hhhHHHHHHhhhcCCCCcEEEEEcCchhHH
Q 035555 166 EALTYSSSNFVEFQSLMQHIQKHV--AGKKLLLVLDDVWNED--------FYKWEQFYNCLKTCLHGSKILITTRKETVA 235 (767)
Q Consensus 166 ~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 235 (767)
... .............+...+ .+++.+||+||++... ......+...+.. + +..+|.||......
T Consensus 90 --~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~-~-~~~~i~~~~~~~~~ 164 (195)
T 1jbk_A 90 --VAG-AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-G-ELHCVGATTLDEYR 164 (195)
T ss_dssp --HTT-TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT-T-SCCEEEEECHHHHH
T ss_pred --hcc-CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc-C-CeEEEEeCCHHHHH
Confidence 000 000111111111111111 3568899999995432 1123334443332 2 34566666654422
Q ss_pred -------hhhcCcceEecCCCChhHHHHHH
Q 035555 236 -------RIMGSADIISVNVLSETECWLVF 258 (767)
Q Consensus 236 -------~~~~~~~~~~l~~L~~~~~~~l~ 258 (767)
........+.+.+++.++..+++
T Consensus 165 ~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 165 QYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 11222346888888888876654
No 163
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.47 E-value=9.4e-07 Score=93.19 Aligned_cols=192 Identities=13% Similarity=0.070 Sum_probs=108.2
Q ss_pred CCccccchhHHHHHHHHH-hcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc---cchhh-hhhhHH-HHHHHHHHHh-
Q 035555 96 ESEIFGREKEKSELVNRL-LCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN---DDVKK-ILRKEY-GIARAIIEAL- 168 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~---~~~~~-~F~~~~-~i~~~i~~~l- 168 (767)
-.+++|+++.++.+..++ .... ... +.|+|+.|+||||+|+.+++. +.... .++... .........+
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~~-----~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~ 86 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPRD-----LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELN 86 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTTC-----CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------C
T ss_pred HHHhcCCHHHHHHHHHHHhhCCC-----CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceee
Confidence 456899999999888877 3321 233 899999999999999988762 11000 011000 0000000000
Q ss_pred ----------hCCCCCccchHHHHHHHHHhc--------------CCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcE
Q 035555 169 ----------TYSSSNFVEFQSLMQHIQKHV--------------AGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSK 224 (767)
Q Consensus 169 ----------~~~~~~~~~~~~~~~~l~~~l--------------~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 224 (767)
........+.....+.+.... .+++-++|+|++...+......+...+.....++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~ 166 (354)
T 1sxj_E 87 VVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIR 166 (354)
T ss_dssp CEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEE
T ss_pred eecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCE
Confidence 000000011011222222221 23566999999987776677778877776556777
Q ss_pred EEEEcCch-hH-HhhhcCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHH
Q 035555 225 ILITTRKE-TV-ARIMGSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIA 296 (767)
Q Consensus 225 ilvTtR~~-~v-~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 296 (767)
+|++|.+. .+ .........+.+.+++.++..+.+...+...+..... .+....|++.++|.+-.+..+.
T Consensus 167 ~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 167 LIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHHH
Confidence 77777653 22 2223345789999999999999998765322211110 1346778888898886554433
No 164
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.44 E-value=1.3e-06 Score=88.94 Aligned_cols=185 Identities=17% Similarity=0.075 Sum_probs=98.9
Q ss_pred CCCccccchhHHHHHHHHHhcCCCC-------CCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHH
Q 035555 95 DESEIFGREKEKSELVNRLLCESSK-------EQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEA 167 (767)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~ 167 (767)
.-.+++|.++.+++|.+.+...... +-...+.+.|+|++|+|||+||+++++.. ...|-... ...
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~--~~~~~~v~------~~~ 86 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET--NATFIRVV------GSE 86 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT--TCEEEEEE------GGG
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh--CCCEEEEe------hHH
Confidence 3457999999999998877432000 00134568999999999999999998742 11111100 000
Q ss_pred hhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCc-----------ChhhHHHHHHhhh-----cCCCCcEEEEEcCc
Q 035555 168 LTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE-----------DFYKWEQFYNCLK-----TCLHGSKILITTRK 231 (767)
Q Consensus 168 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l~-----~~~~gs~ilvTtR~ 231 (767)
+.. .........+...+......++.+|+||++... +......+...+. ....+..||.||..
T Consensus 87 ~~~-~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~ 165 (285)
T 3h4m_A 87 LVK-KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNR 165 (285)
T ss_dssp GCC-CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSC
T ss_pred HHH-hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC
Confidence 000 000011112222233333456789999999431 1111222333332 12345667777775
Q ss_pred hhHHh-h-hc--C-cceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCC-cchHH
Q 035555 232 ETVAR-I-MG--S-ADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGL-PLVAK 293 (767)
Q Consensus 232 ~~v~~-~-~~--~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~ 293 (767)
..... . .. . ...+.++..+.++..+++...+..... ..... ...+++.+.|. |-.+.
T Consensus 166 ~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 166 PDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp GGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHH
T ss_pred chhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHH
Confidence 42211 1 11 1 347899999999999999887643221 11222 45566777664 43443
No 165
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.42 E-value=2.8e-07 Score=86.11 Aligned_cols=88 Identities=20% Similarity=0.276 Sum_probs=73.2
Q ss_pred CceeeeeccC--CCccc-ccccccCCcccEEeecCCccccccchh-hcCCCCCcEEEccCCccccccCcc-cccCcCCcE
Q 035555 444 IKCRRWRCDN--YIKEI-PTNIEKLIHLKYLNLSSQKKIKRLPET-LCELYNLECLAISFCTNLRQLPQG-IGKLRKLMY 518 (767)
Q Consensus 444 ~~~L~~l~l~--~~~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~~ 518 (767)
.+.|+.|+++ .+..+ |..|+++++|++|+|++|. ++.+|.. +.++++|++|+|++|. +..+|.. +..+++|++
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~ 109 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTH 109 (174)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSE
T ss_pred CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCE
Confidence 4678888888 46666 5679999999999999999 8888865 5899999999999998 7788875 889999999
Q ss_pred eeCCCCCCcccccccC
Q 035555 519 LDNDYTNSLRYLPVGI 534 (767)
Q Consensus 519 L~l~~~~~l~~lp~~~ 534 (767)
|++++| .+...+..+
T Consensus 110 L~L~~N-~~~c~~~~~ 124 (174)
T 2r9u_A 110 IYLYNN-PWDCECRDI 124 (174)
T ss_dssp EECCSS-CBCTTBGGG
T ss_pred EEeCCC-CcccccccH
Confidence 999998 555555443
No 166
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.41 E-value=2e-06 Score=92.68 Aligned_cols=178 Identities=17% Similarity=0.163 Sum_probs=100.9
Q ss_pred CCccccchhHH---HHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCC
Q 035555 96 ESEIFGREKEK---SELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSS 172 (767)
Q Consensus 96 ~~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~ 172 (767)
-.+++|.+..+ ..+...+... ....+.|+|++|+||||+|+.+++. ....|.. +....
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f~~-----------l~a~~ 85 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANADVER-----------ISAVT 85 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCEEEE-----------EETTT
T ss_pred HHHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCCeEE-----------EEecc
Confidence 45789999888 6777777643 3467999999999999999999874 2222211 00001
Q ss_pred CCccchHHHHHHHHH-hcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCchh--H-HhhhcCcceEecCC
Q 035555 173 SNFVEFQSLMQHIQK-HVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKET--V-ARIMGSADIISVNV 248 (767)
Q Consensus 173 ~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~--v-~~~~~~~~~~~l~~ 248 (767)
....+.......... ...+++.+|++|++........+.+...+.. +.-.-|..||.+.. + .........+.+.+
T Consensus 86 ~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~ 164 (447)
T 3pvs_A 86 SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-GTITFIGATTENPSFELNSALLSRARVYLLKS 164 (447)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT-TSCEEEEEESSCGGGSSCHHHHTTEEEEECCC
T ss_pred CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-CceEEEecCCCCcccccCHHHhCceeEEeeCC
Confidence 111111111111111 1246788999999977655555556666665 22222333555432 1 22233456889999
Q ss_pred CChhHHHHHHHHhcCCCCCC---cchhhHHHHHHHHHhhcCCCcchHH
Q 035555 249 LSETECWLVFESLGFSGKSM---EERENLEKIGREIIRKCKGLPLVAK 293 (767)
Q Consensus 249 L~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~g~PLai~ 293 (767)
++.++...++.+........ ....-..+..+.|++.++|.+-.+.
T Consensus 165 l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 165 LSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp CCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 99999999988775321100 0011123456677788888876554
No 167
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.41 E-value=8.1e-07 Score=87.93 Aligned_cols=171 Identities=12% Similarity=0.059 Sum_probs=93.0
Q ss_pred Cccccc---hhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCC
Q 035555 97 SEIFGR---EKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSS 173 (767)
Q Consensus 97 ~~~vGr---~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~ 173 (767)
.+|+|+ +..++.+..+.... ..+.+.|+|++|+||||+|+.+++..... .+..
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~~~~~-~~~~----------------- 83 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACARANEL-ERRS----------------- 83 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCE-----------------
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCeE-----------------
Confidence 457763 35566666666432 34578999999999999999998732110 0000
Q ss_pred CccchHHHHHHHHHhcC--CCeEEEEEeCCCCcChhh--HHHHHHhhhcC-CCC-cEEEEEcCchh---------HHhhh
Q 035555 174 NFVEFQSLMQHIQKHVA--GKKLLLVLDDVWNEDFYK--WEQFYNCLKTC-LHG-SKILITTRKET---------VARIM 238 (767)
Q Consensus 174 ~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~ilvTtR~~~---------v~~~~ 238 (767)
...+..+....+.+.+. .++.+||+||++...... ...+...+... ..+ .++|+||+... +...+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~ 163 (242)
T 3bos_A 84 FYIPLGIHASISTALLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRM 163 (242)
T ss_dssp EEEEGGGGGGSCGGGGTTGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHH
T ss_pred EEEEHHHHHHHHHHHHHhccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHh
Confidence 00000000000001111 346789999996543222 33344433221 122 24777776421 11112
Q ss_pred cCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHH
Q 035555 239 GSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTI 295 (767)
Q Consensus 239 ~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 295 (767)
.....+.+.+++.++..+++...+....... ..+....+++.++|.+-.+..+
T Consensus 164 ~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 164 HWGLTYQLQPMMDDEKLAALQRRAAMRGLQL----PEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHSEEEECCCCCGGGHHHHHHHHHHHTTCCC----CHHHHHHHHHHTTTCHHHHHHH
T ss_pred hcCceEEeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHccCCHHHHHHH
Confidence 2236899999999999999987653211111 1244667888888887665543
No 168
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.39 E-value=4.6e-06 Score=90.04 Aligned_cols=155 Identities=13% Similarity=0.066 Sum_probs=91.0
Q ss_pred CEEEEEEccCCChHHHHHHHHHcccchhhhhh-------hHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEE
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNNDDVKKILR-------KEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLL 196 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~-------~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~Ll 196 (767)
...+.|+|++|+||||||+++++. ....+. ....+...+...+... ... .+...+..+.-+|
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~vL 198 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSEKFLNDLVDSMKEG-----KLN----EFREKYRKKVDIL 198 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHHHHHHHHHHHHHTT-----CHH----HHHHHHTTTCSEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHHHHHHHHHHHHHcc-----cHH----HHHHHhcCCCCEE
Confidence 567899999999999999999883 222211 1233344444444321 111 2233334367799
Q ss_pred EEeCCCCcCh--hhHHHHHHhhhc-CCCCcEEEEEcCch---------hHHhhhcCcceEecCCCChhHHHHHHHHhcCC
Q 035555 197 VLDDVWNEDF--YKWEQFYNCLKT-CLHGSKILITTRKE---------TVARIMGSADIISVNVLSETECWLVFESLGFS 264 (767)
Q Consensus 197 VlDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~ 264 (767)
++||++.... ...+.+...+.. ...|..||+||.+. .+...+.....+.+++++.++..+++.+.+..
T Consensus 199 ~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~ 278 (440)
T 2z4s_A 199 LIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEI 278 (440)
T ss_dssp EEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred EEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 9999964332 223334444432 23567788888762 22223333467899999999999999877532
Q ss_pred CCCCcchhhHHHHHHHHHhhcCCCcchHH
Q 035555 265 GKSMEERENLEKIGREIIRKCKGLPLVAK 293 (767)
Q Consensus 265 ~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 293 (767)
...... + ++...|++.+.|.+-.+.
T Consensus 279 ~~~~i~-~---e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 279 EHGELP-E---EVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HTCCCC-T---THHHHHHHHCCSCHHHHH
T ss_pred cCCCCC-H---HHHHHHHHhcCCCHHHHH
Confidence 111111 1 235668888888876543
No 169
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.36 E-value=8.3e-07 Score=82.54 Aligned_cols=100 Identities=12% Similarity=0.058 Sum_probs=46.3
Q ss_pred CceEEEecCCccCCccccCCCCccEEEEeccCCCCCCCC-CCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCC
Q 035555 596 FDLELRFDCNVIPKNWIMSLTNLRYLSLSLFKNCEQLLP-LGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAF 674 (767)
Q Consensus 596 ~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 674 (767)
+.++++++....+|..+ .++|+.|+|++|......|. ++.+++|++|+|++|. ++.++...+ ..+
T Consensus 12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f-----------~~l 77 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVF-----------DKL 77 (170)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTT-----------TTC
T ss_pred CEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhc-----------cCC
Confidence 34455555554555433 25556666655532222121 4555566666665554 333332211 245
Q ss_pred cccceeeccCccccccCccCCccccccccCcccceEeeccC
Q 035555 675 PKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGC 715 (767)
Q Consensus 675 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c 715 (767)
++|+.|+|++| .++.++. +.+..+++|+.|+|++|
T Consensus 78 ~~L~~L~L~~N-~l~~~~~-----~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 78 TQLTQLSLNDN-QLKSIPR-----GAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS
T ss_pred CCCCEEECCCC-ccCEeCH-----HHhcCCCCCCEEEeCCC
Confidence 55555555555 2332221 12344555555555555
No 170
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.35 E-value=2.3e-06 Score=94.65 Aligned_cols=193 Identities=13% Similarity=0.112 Sum_probs=105.3
Q ss_pred CCCCccccchhHHHHHHHHHhcCCC-----------CCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhh---hh---
Q 035555 94 IDESEIFGREKEKSELVNRLLCESS-----------KEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKIL---RK--- 156 (767)
Q Consensus 94 ~~~~~~vGr~~~~~~l~~~L~~~~~-----------~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~--- 156 (767)
..-.+++|+++.++++.+++..... .+....+.+.|+|++|+||||+|+++++.. ...| ++
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l--~~~~i~in~s~~ 113 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL--GYDILEQNASDV 113 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT--TCEEEEECTTSC
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc--CCCEEEEeCCCc
Confidence 3446799999999999999875110 001134689999999999999999998742 1111 00
Q ss_pred -HHHHHHHHHHHhhCCCCCccchHHHHHHH--HHhcCCCeEEEEEeCCCCcC---hhhHHHHHHhhhcCCCCcEEEEEcC
Q 035555 157 -EYGIARAIIEALTYSSSNFVEFQSLMQHI--QKHVAGKKLLLVLDDVWNED---FYKWEQFYNCLKTCLHGSKILITTR 230 (767)
Q Consensus 157 -~~~i~~~i~~~l~~~~~~~~~~~~~~~~l--~~~l~~k~~LlVlDdv~~~~---~~~~~~l~~~l~~~~~gs~ilvTtR 230 (767)
...+....+....... ......... .....+++.+||+|++.... ...+..+...+... +..||+++.
T Consensus 114 ~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~ 187 (516)
T 1sxj_A 114 RSKTLLNAGVKNALDNM----SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICN 187 (516)
T ss_dssp CCHHHHHHTGGGGTTBC----CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEES
T ss_pred chHHHHHHHHHHHhccc----cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEc
Confidence 1111111111110000 000000000 00123578899999995432 22345555555543 233555544
Q ss_pred ch---hHHhhhcCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCC-cchHHHHHhH
Q 035555 231 KE---TVARIMGSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGL-PLVAKTIASL 298 (767)
Q Consensus 231 ~~---~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~~~~ 298 (767)
+. .+.........+.+.+++.++..+++...+......... +....|++.++|. +-|+..+...
T Consensus 188 ~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~----~~l~~la~~s~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 188 ERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP----NVIDRLIQTTRGDIRQVINLLSTI 255 (516)
T ss_dssp CTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT----THHHHHHHHTTTCHHHHHHHHTHH
T ss_pred CCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHcCCcHHHHHHHHHHH
Confidence 32 222222335678999999999999887765322211112 2366788889884 4555555433
No 171
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.34 E-value=2.9e-06 Score=88.14 Aligned_cols=174 Identities=11% Similarity=0.074 Sum_probs=103.0
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCC
Q 035555 95 DESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSN 174 (767)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~ 174 (767)
.-.+++|+++.++.+.+++.... ...++.+.|++|+|||++|+++++.. ...|-. +....
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~l--~~~~~~-----------i~~~~-- 83 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHDV--NADMMF-----------VNGSD-- 83 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHHT--TEEEEE-----------EETTT--
T ss_pred CHHHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHh--CCCEEE-----------Ecccc--
Confidence 34679999999999999997532 34578889999999999999998742 111111 00001
Q ss_pred ccchHHHHHHHHHhc-----CCCeEEEEEeCCCCcC-hhhHHHHHHhhhcCCCCcEEEEEcCchh-HH-hhhcCcceEec
Q 035555 175 FVEFQSLMQHIQKHV-----AGKKLLLVLDDVWNED-FYKWEQFYNCLKTCLHGSKILITTRKET-VA-RIMGSADIISV 246 (767)
Q Consensus 175 ~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~-~~~~~~~~~~l 246 (767)
...+.+...+.... .+++.++|+|++.... ......+...+.....+.++|+||.... +. ........+.+
T Consensus 84 -~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~ 162 (324)
T 3u61_B 84 -CKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITF 162 (324)
T ss_dssp -CCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEEC
T ss_pred -cCHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEe
Confidence 11222222222222 2477899999997765 5556666666665445677888887633 11 11122457899
Q ss_pred CCCChhHHHHH-------HHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchH
Q 035555 247 NVLSETECWLV-------FESLGFSGKSMEERENLEKIGREIIRKCKGLPLVA 292 (767)
Q Consensus 247 ~~L~~~~~~~l-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 292 (767)
++++.++-.++ +...+......... .+....|++.++|.+-.+
T Consensus 163 ~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 163 GQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD---MKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHHH
Confidence 99998874333 22222111111111 144677888888877643
No 172
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.33 E-value=6.6e-07 Score=94.08 Aligned_cols=94 Identities=17% Similarity=0.122 Sum_probs=75.6
Q ss_pred CCcccccccccCCcccEEeecC-Cccccccc-hhhcCCCCCcEEEccCCccccccCc-ccccCcCCcEeeCCCCCCcccc
Q 035555 454 YIKEIPTNIEKLIHLKYLNLSS-QKKIKRLP-ETLCELYNLECLAISFCTNLRQLPQ-GIGKLRKLMYLDNDYTNSLRYL 530 (767)
Q Consensus 454 ~~~~lp~~~~~l~~L~~L~L~~-~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~l 530 (767)
.+..+|. ++.+.+|++|+|++ |. ++.+| ..+.+|++|++|+|++|. +..+|. .|..|++|++|+|++| .+..+
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~ 95 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN-ALESL 95 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS-CCSCC
T ss_pred CCCccCC-CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCC-cccee
Confidence 4678899 99999999999997 77 77777 679999999999999998 666554 6799999999999998 77888
Q ss_pred cccCcCCcCCcccceeEecCc
Q 035555 531 PVGIRELIRLRRVRKFVVGGG 551 (767)
Q Consensus 531 p~~~~~l~~L~~L~~~~~~~~ 551 (767)
|..+.....|+.|.+..+...
T Consensus 96 ~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 96 SWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CSTTTCSCCCCEEECCSSCCC
T ss_pred CHHHcccCCceEEEeeCCCcc
Confidence 876544334887776555444
No 173
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.32 E-value=6e-06 Score=87.46 Aligned_cols=189 Identities=13% Similarity=0.081 Sum_probs=101.9
Q ss_pred CCccccchhHHHH---HHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhh---------hh---HHHH
Q 035555 96 ESEIFGREKEKSE---LVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKIL---------RK---EYGI 160 (767)
Q Consensus 96 ~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F---------~~---~~~i 160 (767)
-.+|+|++..++. +.+.+.... ...+.+.|+|++|+|||++|+++++.......| .. ..+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEA 118 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHH
Confidence 3579999998776 455554432 134689999999999999999998742211011 00 1122
Q ss_pred HHHHHHHhhC---------------------CC-------CC--ccchHHHHHHHHHhc-----CCC----eEEEEEeCC
Q 035555 161 ARAIIEALTY---------------------SS-------SN--FVEFQSLMQHIQKHV-----AGK----KLLLVLDDV 201 (767)
Q Consensus 161 ~~~i~~~l~~---------------------~~-------~~--~~~~~~~~~~l~~~l-----~~k----~~LlVlDdv 201 (767)
.........+ .. .. ..-..++...+.... .++ +.+|++|++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi 198 (368)
T 3uk6_A 119 LTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEV 198 (368)
T ss_dssp HHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESG
T ss_pred HHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhc
Confidence 2222221100 00 00 000122222222211 133 359999999
Q ss_pred CCcChhhHHHHHHhhhcCCCCcEEEEEcCc-------------hhH-HhhhcCcceEecCCCChhHHHHHHHHhcCCCCC
Q 035555 202 WNEDFYKWEQFYNCLKTCLHGSKILITTRK-------------ETV-ARIMGSADIISVNVLSETECWLVFESLGFSGKS 267 (767)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-------------~~v-~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~ 267 (767)
..........+...+...... .++++|.. ..+ .........+.+.+++.++..+++...+.....
T Consensus 199 ~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~ 277 (368)
T 3uk6_A 199 HMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV 277 (368)
T ss_dssp GGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC
T ss_pred cccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 877666667777777654433 34444431 111 122233456899999999999999876532222
Q ss_pred CcchhhHHHHHHHHHhhcC-CCcchHH
Q 035555 268 MEERENLEKIGREIIRKCK-GLPLVAK 293 (767)
Q Consensus 268 ~~~~~~~~~~~~~i~~~~~-g~PLai~ 293 (767)
... .+....|++.+. |.|-.+.
T Consensus 278 ~~~----~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 278 EMS----EDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp CBC----HHHHHHHHHHHHHSCHHHHH
T ss_pred CCC----HHHHHHHHHHhcCCCHHHHH
Confidence 111 234666777776 6665443
No 174
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.29 E-value=5.8e-06 Score=82.90 Aligned_cols=183 Identities=14% Similarity=0.069 Sum_probs=93.8
Q ss_pred CCccccchhHHHHHHHHHh---cCCCC---CCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhh
Q 035555 96 ESEIFGREKEKSELVNRLL---CESSK---EQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALT 169 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~---~~~~~---~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~ 169 (767)
-.+++|.++.++++.+++. ..... +....+.|.|+|++|+|||++|+++++.. ...|-... ...+.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~--~~~~~~~~------~~~~~ 76 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA--QVPFLAMA------GAEFV 76 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH--TCCEEEEE------TTTTS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh--CCCEEEec------hHHHH
Confidence 3568999988887766543 11100 01234568899999999999999998742 11111100 00000
Q ss_pred CCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCc------------Ch---hhHHHHHHhhhcC--CCCcEEEEEcCch
Q 035555 170 YSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE------------DF---YKWEQFYNCLKTC--LHGSKILITTRKE 232 (767)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------------~~---~~~~~l~~~l~~~--~~gs~ilvTtR~~ 232 (767)
..........+...+.......+.+|++|+++.. .. .....+...+... ..+..||.||...
T Consensus 77 -~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~ 155 (262)
T 2qz4_A 77 -EVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRA 155 (262)
T ss_dssp -SSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCG
T ss_pred -hhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCCh
Confidence 0000011122223333333456789999999642 11 1122333333321 2345566666553
Q ss_pred hH-Hh-hhc--C-cceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcc
Q 035555 233 TV-AR-IMG--S-ADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPL 290 (767)
Q Consensus 233 ~v-~~-~~~--~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 290 (767)
.. .. ... . ...+.++..+.++..+++...+..... . .........+++.+.|.+-
T Consensus 156 ~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~--~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 156 DILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-T--QSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp GGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-C--BTHHHHHHHHHHTCTTCCH
T ss_pred hhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-C--cchhhHHHHHHHHCCCCCH
Confidence 32 11 111 1 357788899999999998876532221 1 1112234678888888754
No 175
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.22 E-value=1.2e-05 Score=84.09 Aligned_cols=176 Identities=10% Similarity=0.054 Sum_probs=105.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCCc
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSNF 175 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~~ 175 (767)
-.+++|.+..++.|...+... ....+.++|+.|+||||+|+.+++... ...+.. .....+....
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~---------~~~~~~~~~~ 87 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSN---------MVLELNASDD 87 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHH---------HEEEECTTSC
T ss_pred HHHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccc---------eEEEEcCccc
Confidence 356889999999998888643 222389999999999999999987311 001110 0001111111
Q ss_pred cchHHHHHHHHHhc------CCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCchh-H-HhhhcCcceEecC
Q 035555 176 VEFQSLMQHIQKHV------AGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKET-V-ARIMGSADIISVN 247 (767)
Q Consensus 176 ~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v-~~~~~~~~~~~l~ 247 (767)
...+.+.+.+.... .+.+-++|+|++..........+...+......++++++|.... + .........+.+.
T Consensus 88 ~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~ 167 (340)
T 1sxj_C 88 RGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQ 167 (340)
T ss_dssp CSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred ccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEecc
Confidence 12222222222221 23477899999976655666677777766556677777775432 1 1222335578999
Q ss_pred CCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcch
Q 035555 248 VLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLV 291 (767)
Q Consensus 248 ~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 291 (767)
+++.++..+.+...+-....... .+..+.|++.++|.+--
T Consensus 168 ~l~~~~~~~~l~~~~~~~~~~i~----~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 168 PLPQEAIERRIANVLVHEKLKLS----PNAEKALIELSNGDMRR 207 (340)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCBC----HHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 99999988888765522121111 23466788888887753
No 176
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.20 E-value=1.8e-05 Score=82.13 Aligned_cols=166 Identities=15% Similarity=0.095 Sum_probs=88.1
Q ss_pred HHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccch-hhhhh--hHHHHHHHHHHHhhCCCCCccchHHH
Q 035555 105 EKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDV-KKILR--KEYGIARAIIEALTYSSSNFVEFQSL 181 (767)
Q Consensus 105 ~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~-~~~F~--~~~~i~~~i~~~l~~~~~~~~~~~~~ 181 (767)
....+...+..+. .....+.|+|++|+||||||+.+++.... ...|- ....+...+...+... .....
T Consensus 22 a~~~~~~~~~~~~----~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~ 92 (324)
T 1l8q_A 22 AYEVVKEALENLG----SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKG-----TINEF 92 (324)
T ss_dssp HHHHHHHHHHTTT----TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHT-----CHHHH
T ss_pred HHHHHHHHHhCcC----CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcC-----cHHHH
Confidence 3444555554332 13456889999999999999999874211 11111 1222333333333211 11122
Q ss_pred HHHHHHhcCCCeEEEEEeCCCCcCh--hhHHHHHHhhhc-CCCCcEEEEEcCch---------hHHhhhcCcceEecCCC
Q 035555 182 MQHIQKHVAGKKLLLVLDDVWNEDF--YKWEQFYNCLKT-CLHGSKILITTRKE---------TVARIMGSADIISVNVL 249 (767)
Q Consensus 182 ~~~l~~~l~~k~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L 249 (767)
.. .+ .+..+|++||+..... .....+...+.. ...|..||+||... .+...+.....+.+++
T Consensus 93 ~~----~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~- 166 (324)
T 1l8q_A 93 RN----MY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL- 166 (324)
T ss_dssp HH----HH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-
T ss_pred HH----Hh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-
Confidence 11 12 2367999999954332 222334444322 12456788887642 1222233336789999
Q ss_pred ChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcc
Q 035555 250 SETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPL 290 (767)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 290 (767)
+.++..+++...+........ .+....|++.+ |..-
T Consensus 167 ~~~e~~~il~~~~~~~~~~l~----~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 167 DNKTRFKIIKEKLKEFNLELR----KEVIDYLLENT-KNVR 202 (324)
T ss_dssp CHHHHHHHHHHHHHHTTCCCC----HHHHHHHHHHC-SSHH
T ss_pred CHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHhC-CCHH
Confidence 999999998887632221111 23456677777 6654
No 177
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.18 E-value=5.1e-06 Score=87.25 Aligned_cols=75 Identities=21% Similarity=0.174 Sum_probs=38.4
Q ss_pred eEEEec-CCccCCccccCCCCccEEEEeccCCCCCCCC--CCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCC
Q 035555 598 LELRFD-CNVIPKNWIMSLTNLRYLSLSLFKNCEQLLP--LGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAF 674 (767)
Q Consensus 598 L~l~~~-~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 674 (767)
++.+.+ ....+|. +..+++|+.|+|++++.+..+++ ++.+++|++|+|++|. ++.++...+ ..+
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~-----------~~l 79 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAF-----------HFT 79 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGG-----------GSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHh-----------cCC
Confidence 344444 4445555 55556666666654334444442 5556666666666554 444433221 245
Q ss_pred cccceeeccCc
Q 035555 675 PKLRELKFSYM 685 (767)
Q Consensus 675 ~~L~~L~L~~~ 685 (767)
++|+.|+|++|
T Consensus 80 ~~L~~L~l~~N 90 (347)
T 2ifg_A 80 PRLSRLNLSFN 90 (347)
T ss_dssp SCCCEEECCSS
T ss_pred cCCCEEeCCCC
Confidence 55666666555
No 178
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.17 E-value=6.2e-07 Score=82.33 Aligned_cols=66 Identities=12% Similarity=0.186 Sum_probs=38.2
Q ss_pred CCcccceeeccCccccccCccCCcccccccc----CcccceEeeccCccccC--CCcCCCCCCCCcEEEecCCCchhHH
Q 035555 673 AFPKLRELKFSYMEELEEWDFGTATKGEIII----MPRLSCLIIFGCFKLKA--LPDLLLQKTTLQKLHIWGGCPIFRE 745 (767)
Q Consensus 673 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~----~~~L~~L~l~~c~~l~~--lp~~~~~l~sL~~L~l~~~c~~l~~ 745 (767)
.+++|+.|+|++|..+++.... .+.. .++|++|+|++|++++. +. .+..+++|+.|+| .+||.+++
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL~-----~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L-~~c~~Itd 154 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCLE-----RLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFRNLKYLFL-SDLPGVKE 154 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHHH-----HHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEE-ESCTTCCC
T ss_pred CCCCCCEEEeCCCCccCHHHHH-----HHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEEC-CCCCCCCc
Confidence 5666666666666555443321 1222 24677777777776653 21 2334677777777 77776655
No 179
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.16 E-value=2.4e-05 Score=80.90 Aligned_cols=185 Identities=14% Similarity=0.009 Sum_probs=100.9
Q ss_pred CCccccchhHHHHHHHHHhcCC------CCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhh--HHHHHHHHHHH
Q 035555 96 ESEIFGREKEKSELVNRLLCES------SKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK--EYGIARAIIEA 167 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~~i~~~i~~~ 167 (767)
-.+++|.++.++.|.+.+.... .......+-|.++|++|+|||+||+++++. ....|-. ...+. .
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~~~v~~~~l~----~- 89 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTFFSVSSSDLV----S- 89 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEEEEEEHHHHH----T-
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCEEEEchHHHh----h-
Confidence 3578999999999988773100 001224567999999999999999999884 2222211 11110 0
Q ss_pred hhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCcCh-----------hhHHHHHHhhh---cCCCCcEEEEEcCchh
Q 035555 168 LTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNEDF-----------YKWEQFYNCLK---TCLHGSKILITTRKET 233 (767)
Q Consensus 168 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~---~~~~gs~ilvTtR~~~ 233 (767)
. ........+...+...-..++.+|+||++..... .....+...+. ....+..||.||....
T Consensus 90 ---~-~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~ 165 (322)
T 3eie_A 90 ---K-WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 165 (322)
T ss_dssp ---T-TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGG
T ss_pred ---c-ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChh
Confidence 0 0001111122222223335678999999953211 11233444443 2234555665766532
Q ss_pred H-Hhh--hcCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCC-cchHHHH
Q 035555 234 V-ARI--MGSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGL-PLVAKTI 295 (767)
Q Consensus 234 v-~~~--~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~ 295 (767)
. ... -.....+.++..+.++-.+++...+......... .....|++.+.|. +-.|..+
T Consensus 166 ~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~----~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 166 QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTK----EDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp GSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCH----HHHHHHHHTTTTCCHHHHHHH
T ss_pred hCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCH----HHHHHHHHHcCCCCHHHHHHH
Confidence 2 111 1223567888889999999998876432221122 2356788888874 4344433
No 180
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.16 E-value=2.9e-06 Score=79.99 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=38.7
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
-..++||+++++.+.+.+... ..+.+.|+|++|+|||++|+.+++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999998653 3456789999999999999999874
No 181
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.13 E-value=1e-05 Score=83.32 Aligned_cols=155 Identities=13% Similarity=0.051 Sum_probs=88.4
Q ss_pred ccccchhHHHHHHHHHhcCC---------CCCCCCCEEEEEEccCCChHHHHHHHHHcccchhh-----hhhhHHHHHHH
Q 035555 98 EIFGREKEKSELVNRLLCES---------SKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKK-----ILRKEYGIARA 163 (767)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~-----~F~~~~~i~~~ 163 (767)
+++|.++.++.|.+.+.... -........|.|+|++|+|||++|+.+++...... .|-...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~----- 106 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT----- 106 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC-----
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc-----
Confidence 47899888888876654210 00012455789999999999999998876321100 110000
Q ss_pred HHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCc---------ChhhHHHHHHhhhcCCCCcEEEEEcCchhH
Q 035555 164 IIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE---------DFYKWEQFYNCLKTCLHGSKILITTRKETV 234 (767)
Q Consensus 164 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v 234 (767)
...+... ............+... +..+|++|++..- .......+...+.....+..||.||.....
T Consensus 107 -~~~l~~~-~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~ 181 (309)
T 3syl_A 107 -RDDLVGQ-YIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRM 181 (309)
T ss_dssp -GGGTCCS-STTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHH
T ss_pred -HHHhhhh-cccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHH
Confidence 0000000 0001112222223222 3459999999622 445556677777776667778888865332
Q ss_pred Hhh-------hcC-cceEecCCCChhHHHHHHHHhc
Q 035555 235 ARI-------MGS-ADIISVNVLSETECWLVFESLG 262 (767)
Q Consensus 235 ~~~-------~~~-~~~~~l~~L~~~~~~~l~~~~~ 262 (767)
... ... ...+.+++++.++..+++...+
T Consensus 182 ~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l 217 (309)
T 3syl_A 182 ENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHML 217 (309)
T ss_dssp HHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHH
T ss_pred HHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHH
Confidence 111 111 2688999999999999987765
No 182
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.10 E-value=7.6e-05 Score=77.52 Aligned_cols=178 Identities=10% Similarity=0.054 Sum_probs=106.8
Q ss_pred hhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhh--hhh-h-HHHHHHHHHHHhh-----CCC-
Q 035555 103 EKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKK--ILR-K-EYGIARAIIEALT-----YSS- 172 (767)
Q Consensus 103 ~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~--~F~-~-~~~i~~~i~~~l~-----~~~- 172 (767)
++..+.+...+.... -.+.+.++|+.|+|||++|+.+.+...-.. .+. + .....+.+...-. ...
T Consensus 8 ~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~ 82 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPE 82 (334)
T ss_dssp HHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCC
T ss_pred HHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecc
Confidence 455677777775432 345789999999999999998876311000 000 0 0001111111100 001
Q ss_pred --CCccchHHHHHHHHHhc-----CCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCchh-H-HhhhcCcce
Q 035555 173 --SNFVEFQSLMQHIQKHV-----AGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKET-V-ARIMGSADI 243 (767)
Q Consensus 173 --~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v-~~~~~~~~~ 243 (767)
......+++.+ +.+.+ .+++-++|+|+++.........+...+.....++.+|++|.+.. + .........
T Consensus 83 ~~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~ 161 (334)
T 1a5t_A 83 KGKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRL 161 (334)
T ss_dssp TTCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred ccCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhccee
Confidence 11223333333 33333 35678999999987766677778888876666677777776542 2 233344678
Q ss_pred EecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHH
Q 035555 244 ISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTI 295 (767)
Q Consensus 244 ~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 295 (767)
+.+.+++.++..+.+.... . .. .+.+..+++.++|.|..+..+
T Consensus 162 ~~~~~~~~~~~~~~L~~~~---~--~~----~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 162 HYLAPPPEQYAVTWLSREV---T--MS----QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EECCCCCHHHHHHHHHHHC---C--CC----HHHHHHHHHHTTTCHHHHHHT
T ss_pred eeCCCCCHHHHHHHHHHhc---C--CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999999998875 1 11 123567889999999765443
No 183
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.10 E-value=3.5e-05 Score=80.72 Aligned_cols=186 Identities=14% Similarity=0.008 Sum_probs=99.4
Q ss_pred CCccccchhHHHHHHHHHhcC----C--CCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhh--HHHHHHHHHHH
Q 035555 96 ESEIFGREKEKSELVNRLLCE----S--SKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK--EYGIARAIIEA 167 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~~i~~~i~~~ 167 (767)
-.+++|.++.++.|.+.+... . .......+-|.|+|++|+|||+||+++++.. ...|-. ...+.
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~--~~~~~~v~~~~l~------ 121 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA--NSTFFSVSSSDLV------ 121 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH--TCEEEEEEHHHHH------
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCCEEEeeHHHHh------
Confidence 356899999999998876321 0 0011234568899999999999999999842 222211 11111
Q ss_pred hhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCcCh-----------hhHHHHHHhhhc---CCCCcEEEEEcCchh
Q 035555 168 LTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNEDF-----------YKWEQFYNCLKT---CLHGSKILITTRKET 233 (767)
Q Consensus 168 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~~---~~~gs~ilvTtR~~~ 233 (767)
.... ......+...+...-..++.+|+||++..... .....+...+.. ...+..||.||....
T Consensus 122 --~~~~-g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~ 198 (355)
T 2qp9_X 122 --SKWM-GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 198 (355)
T ss_dssp --SCC----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGG
T ss_pred --hhhc-chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcc
Confidence 0000 01111122222223345788999999953211 012334443332 133455565665432
Q ss_pred -HHh--hhcCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCC-cchHHHHH
Q 035555 234 -VAR--IMGSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGL-PLVAKTIA 296 (767)
Q Consensus 234 -v~~--~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~~ 296 (767)
+.. .-.....+.++..+.++..+++............ ......|++.+.|. +-.|..+.
T Consensus 199 ~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 199 QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp GSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 111 1122357788888999999999877633221111 22356788888874 44454443
No 184
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.09 E-value=7.6e-07 Score=93.30 Aligned_cols=136 Identities=20% Similarity=0.068 Sum_probs=63.5
Q ss_pred ccCCCCcCceEEEecCCccCCccccCCCCccEEEEeccCCCC-CCCCC--CCCCCCCeeeecCCCC-------ceEeccc
Q 035555 589 LEKKKNLFDLELRFDCNVIPKNWIMSLTNLRYLSLSLFKNCE-QLLPL--GKLQSLEYLQIGGMHG-------VKRVGNE 658 (767)
Q Consensus 589 l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~-~l~~l--~~l~~L~~L~L~~~~~-------l~~~~~~ 658 (767)
+..+++|+.|.|+++....+|. + .+++|++|+|..|.... .+..+ ..+|+|++|+|..+.+ +..+...
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred HhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 3445566666666553233333 2 25677777776553211 11112 2567777776643210 1000000
Q ss_pred ccCCCCCCCCccccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCccccC-----CCcCCCCCCCCcE
Q 035555 659 FLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKA-----LPDLLLQKTTLQK 733 (767)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-----lp~~~~~l~sL~~ 733 (767)
+. ...||+|+.|+|.+|..-..... .-...+.+|+|++|+|+.| .++. ++.++.++++|+.
T Consensus 246 l~----------~~~~p~Lr~L~L~~~~i~~~~~~---~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~ 311 (362)
T 2ra8_A 246 FS----------KDRFPNLKWLGIVDAEEQNVVVE---MFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKF 311 (362)
T ss_dssp SC----------TTTCTTCCEEEEESCTTHHHHHH---HHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSE
T ss_pred Hh----------cCCCCCcCEEeCCCCCCchHHHH---HHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceE
Confidence 00 12467777777766531110000 0001124677777777665 3442 3444445667777
Q ss_pred EEecCCCc
Q 035555 734 LHIWGGCP 741 (767)
Q Consensus 734 L~l~~~c~ 741 (767)
|++ .+|.
T Consensus 312 L~L-~~n~ 318 (362)
T 2ra8_A 312 INM-KYNY 318 (362)
T ss_dssp EEC-CSBB
T ss_pred EEC-CCCc
Confidence 777 5553
No 185
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.08 E-value=4.4e-07 Score=83.32 Aligned_cols=92 Identities=11% Similarity=0.003 Sum_probs=68.5
Q ss_pred CCccEEEEeccCCCC--CCCCCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCcc
Q 035555 616 TNLRYLSLSLFKNCE--QLLPLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDF 693 (767)
Q Consensus 616 ~~L~~L~L~~~~~~~--~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~ 693 (767)
.+|+.|++++|. ++ .+..+..+++|++|+|++|..+++.+-....... ..+++|++|+|++|+++++-..
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~-------~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLE-------NLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCH-------HHHHHCCEEEEESCTTCCHHHH
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcc-------cccCCCCEEEcCCCCcCCHHHH
Confidence 579999999996 43 3455788999999999999977664433221100 0246899999999988876443
Q ss_pred CCccccccccCcccceEeeccCccccC
Q 035555 694 GTATKGEIIIMPRLSCLIIFGCFKLKA 720 (767)
Q Consensus 694 ~~~~~~~~~~~~~L~~L~l~~c~~l~~ 720 (767)
. .+..+++|+.|+|++|+.++.
T Consensus 133 ~-----~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 133 I-----ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp H-----HGGGCTTCCEEEEESCTTCCC
T ss_pred H-----HHhcCCCCCEEECCCCCCCCc
Confidence 2 355799999999999998874
No 186
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.08 E-value=1.7e-06 Score=90.64 Aligned_cols=164 Identities=18% Similarity=0.102 Sum_probs=76.1
Q ss_pred ccccCCcccEEeecCCcc---------ccccchhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCCCCCCccccc
Q 035555 461 NIEKLIHLKYLNLSSQKK---------IKRLPETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDNDYTNSLRYLP 531 (767)
Q Consensus 461 ~~~~l~~L~~L~L~~~~~---------~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp 531 (767)
++.++++|+.|.+..... ...++..+..+++|+.|.|++|..+ .+|. + .+++|++|++..|.......
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHH
Confidence 344555556655543220 1134455566777777777776422 3343 3 26677777776652111111
Q ss_pred ccC--cCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCcc-C
Q 035555 532 VGI--RELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVI-P 608 (767)
Q Consensus 532 ~~~--~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~ 608 (767)
..+ ..+++|+.|.+............+..+..+ .....+++|+.|+|..|.... .
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~----------------------l~~~~~p~Lr~L~L~~~~i~~~~ 268 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL----------------------FSKDRFPNLKWLGIVDAEEQNVV 268 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG----------------------SCTTTCTTCCEEEEESCTTHHHH
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHH----------------------HhcCCCCCcCEEeCCCCCCchHH
Confidence 112 245556665543211110001111111100 000134566666665554321 0
Q ss_pred Cccc---cCCCCccEEEEeccCCCCC-----CC-CCCCCCCCCeeeecCCC
Q 035555 609 KNWI---MSLTNLRYLSLSLFKNCEQ-----LL-PLGKLQSLEYLQIGGMH 650 (767)
Q Consensus 609 p~~~---~~l~~L~~L~L~~~~~~~~-----l~-~l~~l~~L~~L~L~~~~ 650 (767)
+..+ ..+++|+.|+|+.|. +++ ++ .+..+++|+.|+|++|.
T Consensus 269 ~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 269 VEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCc
Confidence 1111 145778888887653 332 22 23457888888888775
No 187
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.07 E-value=0.00016 Score=74.98 Aligned_cols=178 Identities=16% Similarity=0.174 Sum_probs=95.6
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCCc
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSNF 175 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~~ 175 (767)
-..++|.+..++.+...+..... .+.....+.++|++|+||||||+.+++. ....|.. ..+ ...
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~~-----------~sg--~~~ 87 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIHV-----------TSG--PVL 87 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEEE-----------EET--TTC
T ss_pred HHHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEEE-----------Eec--hHh
Confidence 35688998888887766643210 0123457999999999999999999883 2111110 000 001
Q ss_pred cchHHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCC--------C----------CcEE-EEEcCchhHHh
Q 035555 176 VEFQSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCL--------H----------GSKI-LITTRKETVAR 236 (767)
Q Consensus 176 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~--------~----------gs~i-lvTtR~~~v~~ 236 (767)
....++...+ ..+. ++-++++|++........+.+...+.... . ...+ ..|++...+..
T Consensus 88 ~~~~~l~~~~-~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~ 165 (334)
T 1in4_A 88 VKQGDMAAIL-TSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSS 165 (334)
T ss_dssp CSHHHHHHHH-HHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCH
T ss_pred cCHHHHHHHH-HHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCH
Confidence 1122222222 1222 34577889885443333344433332211 0 1112 23444333221
Q ss_pred hhc-C-cceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHH
Q 035555 237 IMG-S-ADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTI 295 (767)
Q Consensus 237 ~~~-~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 295 (767)
.+. . .-.+.+++.+.++-.+++.+.+-..... ...+.+..|++.+.|.|-.+..+
T Consensus 166 ~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~----~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 166 PLRSRFGIILELDFYTVKELKEIIKRAASLMDVE----IEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp HHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC----BCHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHhcCCChHHHHHH
Confidence 111 1 2357899999999999998765321111 12345788999999999655433
No 188
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.05 E-value=2.4e-05 Score=73.30 Aligned_cols=117 Identities=16% Similarity=0.166 Sum_probs=62.8
Q ss_pred chhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchh----hhhhhHHHHHHHHHHHhhCCCCCccc
Q 035555 102 REKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVK----KILRKEYGIARAIIEALTYSSSNFVE 177 (767)
Q Consensus 102 r~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~~i~~~i~~~l~~~~~~~~~ 177 (767)
+++.++.+.+++.+-.. .....+.|+|+.|+||||||+.+++..... ..|-...++...+..........
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--- 92 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDT--- 92 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCS---
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHH---
Confidence 44555566555543321 134689999999999999999998742101 11212333444443333321111
Q ss_pred hHHHHHHHHHhcCCCeEEEEEeCCCCcChhhHH--HHHHhhhcC-CCCcEEEEEcCc
Q 035555 178 FQSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWE--QFYNCLKTC-LHGSKILITTRK 231 (767)
Q Consensus 178 ~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTtR~ 231 (767)
.....+. +.-+|||||++......|. .+...+... ..|..+|+||..
T Consensus 93 --~~~~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 93 --KFLKTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp --HHHHHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred --HHHHHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 2222222 4568999999732222333 344444322 246778888874
No 189
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.05 E-value=3.3e-05 Score=81.07 Aligned_cols=188 Identities=12% Similarity=0.048 Sum_probs=97.8
Q ss_pred CCCccccchhHHHHHHHHHhcC----CC--CCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHh
Q 035555 95 DESEIFGREKEKSELVNRLLCE----SS--KEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEAL 168 (767)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l 168 (767)
.-.+++|.+..++.|.+.+... .. ......+.|.|+|++|+|||+||+++++.. ...|-.+. ...+
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~--~~~~~~i~------~~~l 153 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS--GATFFSIS------ASSL 153 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT--TCEEEEEE------GGGG
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc--CCeEEEEe------hHHh
Confidence 3456999999999998877421 00 001245678999999999999999998742 21111100 0000
Q ss_pred hCCCCCccchHHH-HHHHHHhcCCCeEEEEEeCCCCc-----------ChhhHHHHHHhhhcC----CCCcEEEEEcCch
Q 035555 169 TYSSSNFVEFQSL-MQHIQKHVAGKKLLLVLDDVWNE-----------DFYKWEQFYNCLKTC----LHGSKILITTRKE 232 (767)
Q Consensus 169 ~~~~~~~~~~~~~-~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l~~~----~~gs~ilvTtR~~ 232 (767)
.. ......... ...+...-..++.+|+||++... .......+...+... ..+..||.||...
T Consensus 154 ~~--~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~ 231 (357)
T 3d8b_A 154 TS--KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRP 231 (357)
T ss_dssp CC--SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCG
T ss_pred hc--cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCCh
Confidence 00 000011111 12222222356789999998321 011123344444321 2334555566543
Q ss_pred -hHHhhh--cCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCC-CcchHHHHH
Q 035555 233 -TVARIM--GSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKG-LPLVAKTIA 296 (767)
Q Consensus 233 -~v~~~~--~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~~ 296 (767)
.+...+ .....+.+...+.++..+++...+........ ......|++.+.| .+-++..+.
T Consensus 232 ~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 232 QEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS----EEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp GGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 221111 11346788888999888888776532211111 2346678888887 444555443
No 190
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.03 E-value=5.8e-05 Score=77.13 Aligned_cols=180 Identities=13% Similarity=0.037 Sum_probs=98.5
Q ss_pred CCccccchhHHHHHHHHHhcCCC-------CCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhh--HHHHHHHHHH
Q 035555 96 ESEIFGREKEKSELVNRLLCESS-------KEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK--EYGIARAIIE 166 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~~i~~~i~~ 166 (767)
-.+++|.++.+++|.+.+...-. .+-...+.|.|+|++|+|||+||+++++.. ...|-. ...+. .
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~--~~~~i~v~~~~l~----~ 87 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QANFISIKGPELL----T 87 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT--TCEEEEECHHHHH----H
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh--CCCEEEEEhHHHH----h
Confidence 34689999999888887753100 001244679999999999999999999842 222211 11221 1
Q ss_pred HhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCcC--------------hhhHHHHHHhhhcC--CCCcEEEEEcC
Q 035555 167 ALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNED--------------FYKWEQFYNCLKTC--LHGSKILITTR 230 (767)
Q Consensus 167 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------------~~~~~~l~~~l~~~--~~gs~ilvTtR 230 (767)
...+.. ...+...+.......+.++++|++.... ......+...+... ..+..||.||.
T Consensus 88 ~~~g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn 162 (301)
T 3cf0_A 88 MWFGES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN 162 (301)
T ss_dssp HHHTTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEES
T ss_pred hhcCch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecC
Confidence 111111 1112223333334567899999995210 01124444444322 23456666776
Q ss_pred chh-HHhh-hc---CcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcch
Q 035555 231 KET-VARI-MG---SADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLV 291 (767)
Q Consensus 231 ~~~-v~~~-~~---~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 291 (767)
... +... .. ....+.++..+.++-.+++......... ..... ...+++.+.|.|=+
T Consensus 163 ~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 163 RPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp CGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCC----HHHHHHTCSSCCHH
T ss_pred CccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-Cccch----HHHHHHHcCCCCHH
Confidence 542 2111 11 2357889999999988888776532211 11122 23456667776643
No 191
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.02 E-value=1.8e-05 Score=79.81 Aligned_cols=172 Identities=17% Similarity=0.123 Sum_probs=89.9
Q ss_pred CccccchhHHHHHHH-------HHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhh
Q 035555 97 SEIFGREKEKSELVN-------RLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALT 169 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~ 169 (767)
..++|.+..++++.. .+.... ....+.+.|+|++|+|||++|+++++. ....|-.... ...+.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~~~i~~-----~~~~~ 102 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPFIKICS-----PDKMI 102 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSEEEEEC-----GGGCT
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCEEEEeC-----HHHhc
Confidence 357788777666665 332111 235678999999999999999999874 1111111000 00000
Q ss_pred CCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCc----------ChhhHHHHHHhhhc---CCCCcEEEEEcCchhHHh
Q 035555 170 YSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE----------DFYKWEQFYNCLKT---CLHGSKILITTRKETVAR 236 (767)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~~~l~~~l~~---~~~gs~ilvTtR~~~v~~ 236 (767)
+ .........+...+......+..+|+||++... .......+...+.. .+....||.||.......
T Consensus 103 g-~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~ 181 (272)
T 1d2n_A 103 G-FSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQ 181 (272)
T ss_dssp T-CCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHH
T ss_pred C-CchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcc
Confidence 0 000011122233344444567899999998421 11112233333332 122344666777654332
Q ss_pred h---hcC-cceEecCCCCh-hHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCC
Q 035555 237 I---MGS-ADIISVNVLSE-TECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGL 288 (767)
Q Consensus 237 ~---~~~-~~~~~l~~L~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 288 (767)
. ... ...+.+++++. ++...++.+.. . .. .+....|++.+.|.
T Consensus 182 ~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~-~~----~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 182 EMEMLNAFSTTIHVPNIATGEQLLEALELLG----N-FK----DKERTTIAQQVKGK 229 (272)
T ss_dssp HTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C-SC----HHHHHHHHHHHTTS
T ss_pred hhhhhcccceEEcCCCccHHHHHHHHHHhcC----C-CC----HHHHHHHHHHhcCC
Confidence 2 122 45788999988 66666666532 1 11 22356677777774
No 192
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.00 E-value=0.00011 Score=78.39 Aligned_cols=265 Identities=14% Similarity=0.091 Sum_probs=137.7
Q ss_pred ccCceeeeeccC-CCcccc-cccccCCcccEEeecCCccccccc-hhhcCCCCCcEEEccCC------------cc----
Q 035555 442 KLIKCRRWRCDN-YIKEIP-TNIEKLIHLKYLNLSSQKKIKRLP-ETLCELYNLECLAISFC------------TN---- 502 (767)
Q Consensus 442 ~~~~~L~~l~l~-~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~L~~~------------~~---- 502 (767)
..|+.|+.+.+. .++.++ ..|.++.+|+.+++..+ ++.++ ..+.++.+|+.+.+..+ ..
T Consensus 68 ~~c~~L~~i~lp~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~ 145 (394)
T 4fs7_A 68 QGCRKVTEIKIPSTVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEIT 145 (394)
T ss_dssp TTCTTEEEEECCTTCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEE
T ss_pred hCCCCceEEEeCCCccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCceeeecceeeecccccccc
Confidence 456777777775 566665 45788888888888654 44554 34556666666555322 10
Q ss_pred ----ccccC-cccccCcCCcEeeCCCCCCcccccc-cCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCC
Q 035555 503 ----LRQLP-QGIGKLRKLMYLDNDYTNSLRYLPV-GIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLG 576 (767)
Q Consensus 503 ----l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~ 576 (767)
...+. ..|..+++|+.+.+..+ +..++. .+..+.+|+.+.+-.. ...... ..+..+..|..+.+....
T Consensus 146 ~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~---~~F~~~~~L~~i~~~~~~ 219 (394)
T 4fs7_A 146 IPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRD---YCFAECILLENMEFPNSL 219 (394)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECT---TTTTTCTTCCBCCCCTTC
T ss_pred cCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCc---hhhccccccceeecCCCc
Confidence 11111 13567788888888754 234443 3555666666543211 000001 112222233322221100
Q ss_pred -CCC----------------ChhhhHHhhccCCCCcCceEEEecCCccCCccccCCCCccEEEEeccCCCCCCCCCCCCC
Q 035555 577 -DVS----------------DVGEARRAELEKKKNLFDLELRFDCNVIPKNWIMSLTNLRYLSLSLFKNCEQLLPLGKLQ 639 (767)
Q Consensus 577 -~~~----------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~ 639 (767)
.+. .........+.++..|+.+.+..+........+..+.+|+.+.+.... ..-..+..++
T Consensus 220 ~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~--i~~~~F~~~~ 297 (394)
T 4fs7_A 220 YYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI--VPEKTFYGCS 297 (394)
T ss_dssp CEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE--ECTTTTTTCT
T ss_pred eEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee--eccccccccc
Confidence 000 000000122334455555555443332333333445555555543221 0011255677
Q ss_pred CCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCcccc
Q 035555 640 SLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLK 719 (767)
Q Consensus 640 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 719 (767)
+|+.+.+.+ +++.++...+ .++.+|+.++|.. +++.+. ..++..+++|+.+.+..+ ++
T Consensus 298 ~L~~i~l~~--~i~~I~~~aF-----------~~c~~L~~i~lp~--~v~~I~-----~~aF~~c~~L~~i~lp~~--l~ 355 (394)
T 4fs7_A 298 SLTEVKLLD--SVKFIGEEAF-----------ESCTSLVSIDLPY--LVEEIG-----KRSFRGCTSLSNINFPLS--LR 355 (394)
T ss_dssp TCCEEEECT--TCCEECTTTT-----------TTCTTCCEECCCT--TCCEEC-----TTTTTTCTTCCEECCCTT--CC
T ss_pred ccccccccc--ccceechhhh-----------cCCCCCCEEEeCC--cccEEh-----HHhccCCCCCCEEEECcc--cc
Confidence 788877754 3566655332 3678888888864 244332 335667889999998754 66
Q ss_pred CCC-cCCCCCCCCcEEEecC
Q 035555 720 ALP-DLLLQKTTLQKLHIWG 738 (767)
Q Consensus 720 ~lp-~~~~~l~sL~~L~l~~ 738 (767)
.++ ..+.++++|+.+.++.
T Consensus 356 ~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 356 KIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp EECTTTBTTCTTCCEEEEEG
T ss_pred EehHHHhhCCCCCCEEEECC
Confidence 665 4577789999999843
No 193
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.00 E-value=8e-05 Score=76.04 Aligned_cols=186 Identities=15% Similarity=0.067 Sum_probs=96.2
Q ss_pred CCccccchhHHHHHHHHHhcCCC------CCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhh
Q 035555 96 ESEIFGREKEKSELVNRLLCESS------KEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALT 169 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~ 169 (767)
-.+++|.+..++.+.+.+..... ......+.|.|+|++|+||||+|+++++.. ...|-... ...+.
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~--~~~~~~i~------~~~l~ 91 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC--SATFLNIS------AASLT 91 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT--TCEEEEEE------STTTS
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh--CCCeEEee------HHHHh
Confidence 35699999999999887743100 001134678999999999999999998742 22221100 00000
Q ss_pred CCCCCccchHHHH-HHHHHhcCCCeEEEEEeCCCCcC-----------hhhHHHHHHhhhcC-----CCCcEEEEEcCch
Q 035555 170 YSSSNFVEFQSLM-QHIQKHVAGKKLLLVLDDVWNED-----------FYKWEQFYNCLKTC-----LHGSKILITTRKE 232 (767)
Q Consensus 170 ~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~~~-----~~gs~ilvTtR~~ 232 (767)
... ........ ..+......++.+|++|++.... ......+...+... +.+..||.||...
T Consensus 92 ~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~ 169 (297)
T 3b9p_A 92 SKY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRP 169 (297)
T ss_dssp SSS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCG
T ss_pred hcc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCCh
Confidence 000 01112222 22222334567899999984321 11112233333221 1334566666653
Q ss_pred h-HHhh-h-cCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcc-hHHHH
Q 035555 233 T-VARI-M-GSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPL-VAKTI 295 (767)
Q Consensus 233 ~-v~~~-~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 295 (767)
. +... . .....+.++..+.++...++...+........ ......+++.+.|.+- ++..+
T Consensus 170 ~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 170 QELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp GGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred hhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 2 1111 1 12346777777888888887765422111111 2345678888888775 44433
No 194
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.95 E-value=1e-05 Score=72.85 Aligned_cols=111 Identities=17% Similarity=0.099 Sum_probs=67.2
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccch-hhhh--hhHHHHHHHHHHHhhCCCCC
Q 035555 98 EIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDV-KKIL--RKEYGIARAIIEALTYSSSN 174 (767)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~-~~~F--~~~~~i~~~i~~~l~~~~~~ 174 (767)
+++|+...+.++.+.+..-.. ...-|.|+|.+|+|||++|+.+++.... ...| ++ .....
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~-------------~~~~~ 64 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRE-------------LTPDN 64 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEE-------------CCTTT
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEEC-------------CCCCc
Confidence 578999999999988754322 2235789999999999999999874211 1111 11 00000
Q ss_pred ccchHHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCc
Q 035555 175 FVEFQSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRK 231 (767)
Q Consensus 175 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 231 (767)
. ......+... ..-.|++|++..........+...+.......++|.||..
T Consensus 65 ~---~~~~~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 65 A---PQLNDFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp S---SCHHHHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred c---hhhhcHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 0 1111122222 2347899999776666666677777655556678777764
No 195
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.94 E-value=0.00011 Score=75.62 Aligned_cols=189 Identities=16% Similarity=0.039 Sum_probs=99.1
Q ss_pred CCccccchhHHHHHHHHHhcC----C--CCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhh
Q 035555 96 ESEIFGREKEKSELVNRLLCE----S--SKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALT 169 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~ 169 (767)
-.+++|.++.++.|.+.+..+ . .......+-|.++|++|+|||+||+++++... ...|-.+. ...+.
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~~~~i~------~~~l~ 83 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NSTFFSIS------SSDLV 83 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCEEEEEE------CCSSC
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCcEEEEE------hHHHH
Confidence 356899999988888776321 0 00112446789999999999999999997421 11111100 00000
Q ss_pred CCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCc-------Chh----hHHHHHHhhhc---CCCCcEEEEEcCchh-H
Q 035555 170 YSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE-------DFY----KWEQFYNCLKT---CLHGSKILITTRKET-V 234 (767)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------~~~----~~~~l~~~l~~---~~~gs~ilvTtR~~~-v 234 (767)
. .........+...+...-..++.+|++|++... ... ....+...+.. ...+..||.||.... +
T Consensus 84 ~-~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~l 162 (322)
T 1xwi_A 84 S-KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVL 162 (322)
T ss_dssp C-SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTS
T ss_pred h-hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccC
Confidence 0 000011122222222233457889999999532 001 11223333332 123445555665432 1
Q ss_pred Hhh--hcCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCc-chHHHHH
Q 035555 235 ARI--MGSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLP-LVAKTIA 296 (767)
Q Consensus 235 ~~~--~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~ 296 (767)
... ......+.++..+.++..+++............ ......|++.+.|.. -.|..+.
T Consensus 163 d~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 163 DSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT----EADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp CHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC----HHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 111 122357788888999999998876532221111 233677888888874 3455444
No 196
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.90 E-value=9.7e-05 Score=80.35 Aligned_cols=176 Identities=13% Similarity=0.077 Sum_probs=97.5
Q ss_pred CccccchhHHHHHHHHHhcCCCC-------CCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhh--HHHHHHHHHHH
Q 035555 97 SEIFGREKEKSELVNRLLCESSK-------EQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK--EYGIARAIIEA 167 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~~i~~~i~~~ 167 (767)
.+++|.+..+++|.+++...... +....+-|.|+|++|+|||++|+++++. ....|-. ...+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~fv~vn~~~l~------ 275 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFFFLINGPEIM------ 275 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSEEEEEEHHHHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCCEEEEEchHhh------
Confidence 46899999999998877532000 0113456899999999999999999874 2222221 11111
Q ss_pred hhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCc--------C---hhhHHHHHHhhhcC--CCCcEEEEEcCchh-
Q 035555 168 LTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE--------D---FYKWEQFYNCLKTC--LHGSKILITTRKET- 233 (767)
Q Consensus 168 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------~---~~~~~~l~~~l~~~--~~gs~ilvTtR~~~- 233 (767)
.. ........+...+.....+++.+|+||++... . ......+...+... ..+.+||.||....
T Consensus 276 --~~-~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~ 352 (489)
T 3hu3_A 276 --SK-LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (489)
T ss_dssp --TS-CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGG
T ss_pred --hh-hcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccc
Confidence 00 00111222333444444567889999998210 0 11223355555432 23445555666542
Q ss_pred HHhhh----cCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCC
Q 035555 234 VARIM----GSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGL 288 (767)
Q Consensus 234 v~~~~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 288 (767)
+...+ .....+.+...+.++-.+++...+..... ..... ...+++.+.|.
T Consensus 353 Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~----l~~la~~t~g~ 406 (489)
T 3hu3_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGH 406 (489)
T ss_dssp BCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCC----HHHHHHTCTTC
T ss_pred cCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhh----HHHHHHHccCC
Confidence 21111 12346889999999999999877532221 12222 34566677664
No 197
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.90 E-value=0.00018 Score=76.47 Aligned_cols=187 Identities=13% Similarity=0.055 Sum_probs=96.6
Q ss_pred CCCCccccchhHHHHHHHHHhcCCC------CCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhh--HHHHHHHHH
Q 035555 94 IDESEIFGREKEKSELVNRLLCESS------KEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK--EYGIARAII 165 (767)
Q Consensus 94 ~~~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~~i~~~i~ 165 (767)
..-.+++|.+..++.|.+++..... ......+.|.|+|++|+|||+||+++++. ....|-. ...+.
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~~~~v~~~~l~---- 185 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNATFFNISAASLT---- 185 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCEEEEECSCCC-----
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCcEEEeeHHHhh----
Confidence 3345799999999999988732100 00113467899999999999999999874 2222211 00000
Q ss_pred HHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCc-----------ChhhHHHHHHhhhcC----CCCcEEEEEcC
Q 035555 166 EALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE-----------DFYKWEQFYNCLKTC----LHGSKILITTR 230 (767)
Q Consensus 166 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l~~~----~~gs~ilvTtR 230 (767)
.... ......+...+...-...+.+|+||++... .......+...+... .....||.||.
T Consensus 186 ----~~~~-g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn 260 (389)
T 3vfd_A 186 ----SKYV-GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATN 260 (389)
T ss_dssp -----------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEES
T ss_pred ----cccc-chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecC
Confidence 0000 001111122222222345679999999432 011112233322211 22344555665
Q ss_pred ch-hHHhh-hcC-cceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcc-hHHHH
Q 035555 231 KE-TVARI-MGS-ADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPL-VAKTI 295 (767)
Q Consensus 231 ~~-~v~~~-~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 295 (767)
.. .+... ... ...+.+...+.++..+++...+........ ......|++.+.|..- ++..+
T Consensus 261 ~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 261 RPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT----QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp CGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred CchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 42 22111 112 246888889999999998877633222111 2345678888887554 44443
No 198
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.88 E-value=6.2e-07 Score=94.79 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=30.7
Q ss_pred CcccEEeecCCcccccc-----chhhc-CCCCCcEEEccCCccccc-cCcccccCcCCcEeeCCCC
Q 035555 466 IHLKYLNLSSQKKIKRL-----PETLC-ELYNLECLAISFCTNLRQ-LPQGIGKLRKLMYLDNDYT 524 (767)
Q Consensus 466 ~~L~~L~L~~~~~~~~l-----p~~~~-~l~~L~~L~L~~~~~l~~-lp~~~~~l~~L~~L~l~~~ 524 (767)
++|++|+|++|. ++.. ...+. ...+|++|+|++|..... +......+++|++|++++|
T Consensus 72 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n 136 (372)
T 3un9_A 72 SSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136 (372)
T ss_dssp TTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred hhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC
Confidence 456677777776 4331 22222 225777777777762211 1112234556777777776
No 199
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.88 E-value=0.00013 Score=77.72 Aligned_cols=234 Identities=11% Similarity=0.031 Sum_probs=132.3
Q ss_pred cccccCCcccEEeecCCccccccc-hhhcCCCCCcEEEccCCccccccCc-ccccCcCCcEeeCCCCCCcccccccCcCC
Q 035555 460 TNIEKLIHLKYLNLSSQKKIKRLP-ETLCELYNLECLAISFCTNLRQLPQ-GIGKLRKLMYLDNDYTNSLRYLPVGIREL 537 (767)
Q Consensus 460 ~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l 537 (767)
..|.++..|+.+.+..+ +..++ ..+.++.+|+.+.+..+ +..++. .+..+..|+.+.+..+ ...+.......
T Consensus 156 ~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~ 229 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSK 229 (394)
T ss_dssp TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTT
T ss_pred hhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC--ceEeehhhccc
Confidence 45667777777777654 33343 44667777777777653 444443 3566677777666543 12222222233
Q ss_pred cCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceEEEecCCccCCccccCCCC
Q 035555 538 IRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLELRFDCNVIPKNWIMSLTN 617 (767)
Q Consensus 538 ~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~ 617 (767)
.+|+.+.+-. .... ..-..+..+..|..+.+..- ........+..+..++.+.+..+ ......+..+.+
T Consensus 230 ~~l~~i~ip~-~~~~---i~~~~f~~~~~l~~~~~~~~-----~~~i~~~~F~~~~~l~~~~~~~~--~i~~~~F~~~~~ 298 (394)
T 4fs7_A 230 TGVKNIIIPD-SFTE---LGKSVFYGCTDLESISIQNN-----KLRIGGSLFYNCSGLKKVIYGSV--IVPEKTFYGCSS 298 (394)
T ss_dssp CCCCEEEECT-TCCE---ECSSTTTTCSSCCEEEECCT-----TCEECSCTTTTCTTCCEEEECSS--EECTTTTTTCTT
T ss_pred CCCceEEECC-Ccee---cccccccccccceeEEcCCC-----cceeeccccccccccceeccCce--eecccccccccc
Confidence 4444442210 0000 01112334445555444321 00111234556666766655432 122334557889
Q ss_pred ccEEEEeccCCCCCCC--CCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCccCC
Q 035555 618 LRYLSLSLFKNCEQLL--PLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGT 695 (767)
Q Consensus 618 L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~ 695 (767)
|+.+.+..+ ++.++ .+.++++|+.++|.+ .++.++...+ .+|.+|+.+.|..+ ++.+.
T Consensus 299 L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF-----------~~c~~L~~i~lp~~--l~~I~--- 358 (394)
T 4fs7_A 299 LTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSF-----------RGCTSLSNINFPLS--LRKIG--- 358 (394)
T ss_dssp CCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEECTTTT-----------TTCTTCCEECCCTT--CCEEC---
T ss_pred ccccccccc--cceechhhhcCCCCCCEEEeCC--cccEEhHHhc-----------cCCCCCCEEEECcc--ccEeh---
Confidence 999998753 45444 377899999999854 3777765433 37889999988643 44433
Q ss_pred ccccccccCcccceEeeccCccccCCCcCCCCCCCCcEE
Q 035555 696 ATKGEIIIMPRLSCLIIFGCFKLKALPDLLLQKTTLQKL 734 (767)
Q Consensus 696 ~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~sL~~L 734 (767)
..++..+++|+.+.+... ++.+...+.++++|+.+
T Consensus 359 --~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 359 --ANAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp --TTTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred --HHHhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 335678899999999764 55555667777777765
No 200
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.84 E-value=1.8e-05 Score=70.88 Aligned_cols=111 Identities=9% Similarity=0.035 Sum_probs=63.5
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCCcc
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSNFV 176 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~~~ 176 (767)
-.++|++..++++.+.+..-.. ...-|.|+|.+|+|||++|+.+++... .|-. -.....
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~---~~~~--------------~~~~~~ 62 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT---PWVS--------------PARVEY 62 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS---CEEC--------------CSSTTH
T ss_pred cCceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC---CeEE--------------echhhC
Confidence 3588999999888888754221 223478999999999999999988432 1211 000000
Q ss_pred chHHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhhcC-CCCcEEEEEcCc
Q 035555 177 EFQSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTC-LHGSKILITTRK 231 (767)
Q Consensus 177 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~ 231 (767)
. ......+.... +.-.+++|++..........+...+... ..+.++|.||..
T Consensus 63 ~-~~~~~~~~~~a--~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 63 L-IDMPMELLQKA--EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp H-HHCHHHHHHHT--TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred C-hHhhhhHHHhC--CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 0 00011111111 2347899999876655556666666543 345678877763
No 201
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.73 E-value=0.00048 Score=74.37 Aligned_cols=188 Identities=17% Similarity=0.064 Sum_probs=98.0
Q ss_pred CCCccccchhHHHHHHHHHhcC----C--CCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhh-h-HHHHHHHHHH
Q 035555 95 DESEIFGREKEKSELVNRLLCE----S--SKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILR-K-EYGIARAIIE 166 (767)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~-~~~i~~~i~~ 166 (767)
.-.+++|.++.++.|.+.+..+ . .......+-|.|+|++|+|||+||+++++... ...|- . ...+..
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-~~~~~~v~~~~l~~---- 206 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NSTFFSISSSDLVS---- 206 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-SSEEEEECCC--------
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-CCCEEEEeHHHHHh----
Confidence 3456899999999998877321 0 00112446789999999999999999998421 11121 1 001110
Q ss_pred HhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCcC-------hh----hHHHHHHhhhc---CCCCcEEEEEcCch
Q 035555 167 ALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNED-------FY----KWEQFYNCLKT---CLHGSKILITTRKE 232 (767)
Q Consensus 167 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------~~----~~~~l~~~l~~---~~~gs~ilvTtR~~ 232 (767)
...+. .......+. ...-..++.+|+||++.... .. ....+...+.. ...+..||.||...
T Consensus 207 ~~~g~--~~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~ 281 (444)
T 2zan_A 207 KWLGE--SEKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIP 281 (444)
T ss_dssp -------CCCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCG
T ss_pred hhcch--HHHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCc
Confidence 00000 011122222 22223567899999996421 01 11223333322 13445566666553
Q ss_pred hH-Hh-hhcC-cceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCC-cchHHHHH
Q 035555 233 TV-AR-IMGS-ADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGL-PLVAKTIA 296 (767)
Q Consensus 233 ~v-~~-~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~~ 296 (767)
.. .. .... ...+.++..+.++...+|............ ......|++.+.|. +-.|..+.
T Consensus 282 ~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 282 WVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT----EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp GGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 21 11 1112 346778888888888888877532221111 13356788888884 43444433
No 202
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.68 E-value=0.0003 Score=76.50 Aligned_cols=143 Identities=16% Similarity=0.126 Sum_probs=77.8
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccch--------hhhh-hhHHHHHHHHHHH
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDV--------KKIL-RKEYGIARAIIEA 167 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~--------~~~F-~~~~~i~~~i~~~ 167 (767)
..++||+++++++.+.|... ...-+.|+|++|+|||++|+.+++...- ...| ..... ..
T Consensus 180 d~iiGr~~~i~~l~~~l~r~------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------~~ 247 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------TK 247 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCcHHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC------cc
Confidence 46999999999999999753 2235679999999999999999873100 0001 11000 00
Q ss_pred hhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCchhHH-------hhhcC
Q 035555 168 LTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKETVA-------RIMGS 240 (767)
Q Consensus 168 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~-------~~~~~ 240 (767)
..+. ....... .+...-..++.+|++|.- . .....+...+.. ...++|.+|...... .....
T Consensus 248 ~~g~--~e~~~~~---~~~~~~~~~~~iLfiD~~--~--~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~~al~~R 316 (468)
T 3pxg_A 248 YRGE--FEDRLKK---VMDEIRQAGNIILFIDAA--I--DASNILKPSLAR--GELQCIGATTLDEYRKYIEKDAALERR 316 (468)
T ss_dssp -------CTTHHH---HHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTCSHHHHS
T ss_pred ccch--HHHHHHH---HHHHHHhcCCeEEEEeCc--h--hHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcCHHHHHh
Confidence 0000 0011222 223333356789999911 1 112223333322 234566555544321 11222
Q ss_pred cceEecCCCChhHHHHHHHHhc
Q 035555 241 ADIISVNVLSETECWLVFESLG 262 (767)
Q Consensus 241 ~~~~~l~~L~~~~~~~l~~~~~ 262 (767)
...+.+++.+.++..+++....
T Consensus 317 f~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 317 FQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp EEEEECCCCCHHHHHHHHHHTT
T ss_pred CccceeCCCCHHHHHHHHHHHH
Confidence 4579999999999999998764
No 203
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.68 E-value=7.9e-07 Score=93.98 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=25.3
Q ss_pred CCCCcEEEccCCccccc-----cCcccc-cCcCCcEeeCCCCC
Q 035555 489 LYNLECLAISFCTNLRQ-----LPQGIG-KLRKLMYLDNDYTN 525 (767)
Q Consensus 489 l~~L~~L~L~~~~~l~~-----lp~~~~-~l~~L~~L~l~~~~ 525 (767)
+++|+.|+|++|. +.. +...+. ..++|++|++++|.
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~ 112 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ 112 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC
Confidence 5689999999998 432 222222 23799999999983
No 204
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.65 E-value=0.00062 Score=72.54 Aligned_cols=79 Identities=9% Similarity=0.018 Sum_probs=48.4
Q ss_pred ccCceeeeeccC-----CCcccc-cccccCCcccEEeecCCccccccc-hhhcCCCCCcEEEccCCccccccCc-ccccC
Q 035555 442 KLIKCRRWRCDN-----YIKEIP-TNIEKLIHLKYLNLSSQKKIKRLP-ETLCELYNLECLAISFCTNLRQLPQ-GIGKL 513 (767)
Q Consensus 442 ~~~~~L~~l~l~-----~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~-~~~~l 513 (767)
..|..|+.+.+. .++.+. ..|..+..|+.+.+..+ ++.++ ..+..+.+|+.+.+... +..++. .+..+
T Consensus 84 ~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c 159 (394)
T 4gt6_A 84 YNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYC 159 (394)
T ss_dssp TTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTC
T ss_pred hCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccccccccce--eeeecccceecc
Confidence 356667666543 344554 45677777877776654 44554 44667888888887643 334443 45667
Q ss_pred cCCcEeeCCCC
Q 035555 514 RKLMYLDNDYT 524 (767)
Q Consensus 514 ~~L~~L~l~~~ 524 (767)
.+|..+.+..+
T Consensus 160 ~~L~~i~~~~~ 170 (394)
T 4gt6_A 160 YSLHTVTLPDS 170 (394)
T ss_dssp TTCCEEECCTT
T ss_pred cccccccccce
Confidence 77777777643
No 205
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.63 E-value=9.2e-05 Score=87.14 Aligned_cols=149 Identities=17% Similarity=0.164 Sum_probs=77.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccch--------hhhhhh--HHHHHHHHHH
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDV--------KKILRK--EYGIARAIIE 166 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~--------~~~F~~--~~~i~~~i~~ 166 (767)
..++||++++.++++.|.... ...+.++|++|+|||++|+.+++...- ...|-. ...+.
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~----- 238 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLL----- 238 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhh-----
Confidence 458999999999999997542 234789999999999999999874200 000000 00000
Q ss_pred HhhCCCCCccchHH-HHHHHHHhcC-CCeEEEEEeCCCCcC--------hhhHHHHHHhhhcCCCCcEEEEEcCchhHHh
Q 035555 167 ALTYSSSNFVEFQS-LMQHIQKHVA-GKKLLLVLDDVWNED--------FYKWEQFYNCLKTCLHGSKILITTRKETVAR 236 (767)
Q Consensus 167 ~l~~~~~~~~~~~~-~~~~l~~~l~-~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 236 (767)
.+.... .+... +...+...-. +++.+|++|++.... ......+...+.. + +..+|.+|.......
T Consensus 239 --~g~~~~-g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~-~-~i~~I~at~~~~~~~ 313 (854)
T 1qvr_A 239 --AGAKYR-GEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR-G-ELRLIGATTLDEYRE 313 (854)
T ss_dssp ----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT-T-CCCEEEEECHHHHHH
T ss_pred --ccCccc-hHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC-C-CeEEEEecCchHHhh
Confidence 000000 11122 2222222222 468899999995421 1111223434433 2 234555554433211
Q ss_pred ------hhcCcceEecCCCChhHHHHHHHHh
Q 035555 237 ------IMGSADIISVNVLSETECWLVFESL 261 (767)
Q Consensus 237 ------~~~~~~~~~l~~L~~~~~~~l~~~~ 261 (767)
.......+.+++.+.++..+++...
T Consensus 314 ~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 314 IEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred hccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 1122346899999999999988643
No 206
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.63 E-value=0.00013 Score=74.95 Aligned_cols=131 Identities=11% Similarity=0.147 Sum_probs=70.5
Q ss_pred ccccchhHHHHHHHHHhcCCC---CCCCCCEEEEEEccCCChHHHHHHHHHcccch-hhhh---hhHH-HHHHHHHHHhh
Q 035555 98 EIFGREKEKSELVNRLLCESS---KEQKGPCVISLVGMGGIGKTTLAQFAYNNDDV-KKIL---RKEY-GIARAIIEALT 169 (767)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~-~~~F---~~~~-~i~~~i~~~l~ 169 (767)
.++|.+..++.+...+..... ........+.++|++|+|||++|+.+++...- ...| ++.. .-.......++
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 97 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIG 97 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHC
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcC
Confidence 478999998888887765311 01223468999999999999999999873210 1111 1100 00000111111
Q ss_pred CCCC--CccchHHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCC-----------CCcEEEEEcCc
Q 035555 170 YSSS--NFVEFQSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCL-----------HGSKILITTRK 231 (767)
Q Consensus 170 ~~~~--~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 231 (767)
.... .......+...+.. ...-+++||++..........+...+.... ..+.+|.||..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~ 169 (311)
T 4fcw_A 98 APPGYVGYEEGGQLTEAVRR---RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNL 169 (311)
T ss_dssp CCTTSTTTTTCCHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEEST
T ss_pred CCCccccccccchHHHHHHh---CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEeccc
Confidence 1111 01111222222222 234699999997766666777777775432 23446677665
No 207
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.62 E-value=0.0014 Score=69.64 Aligned_cols=255 Identities=10% Similarity=0.039 Sum_probs=133.8
Q ss_pred eeeeccC-CCcccc-cccccCCcccEEeecCCc--cccccc-hhhcCCCCCcEEEccCCccccccCc-ccccCcCCcEee
Q 035555 447 RRWRCDN-YIKEIP-TNIEKLIHLKYLNLSSQK--KIKRLP-ETLCELYNLECLAISFCTNLRQLPQ-GIGKLRKLMYLD 520 (767)
Q Consensus 447 L~~l~l~-~~~~lp-~~~~~l~~L~~L~L~~~~--~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~ 520 (767)
|....+. .++.+. ..|.++.+|+.+.+..+. .++.++ .++.+|.+|+.+.+..+ +..++. .+..+.+|+.+.
T Consensus 66 L~sI~iP~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhccccccc
Confidence 5555554 455554 457788888888876542 245554 44667777777766543 444443 456778888888
Q ss_pred CCCCCCcccccc-cCcCCcCCcccceeEecCccCCCCChhhhhcCCCCCCeeeeCCCCCCChhhhHHhhccCCCCcCceE
Q 035555 521 NDYTNSLRYLPV-GIRELIRLRRVRKFVVGGGYDRACSLESLKRLILLRECRIHGLGDVSDVGEARRAELEKKKNLFDLE 599 (767)
Q Consensus 521 l~~~~~l~~lp~-~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 599 (767)
+... +..++. .+....+|+.+.+-.. ....+.. .+.. ..|..+.+..- +.. .....+.++.+|....
T Consensus 144 lp~~--~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~---aF~~-~~l~~i~ip~~--~~~---i~~~af~~c~~l~~~~ 211 (394)
T 4gt6_A 144 IPEG--VTSVADGMFSYCYSLHTVTLPDS-VTAIEER---AFTG-TALTQIHIPAK--VTR---IGTNAFSECFALSTIT 211 (394)
T ss_dssp CCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTT---TTTT-CCCSEEEECTT--CCE---ECTTTTTTCTTCCEEE
T ss_pred ccce--eeeecccceecccccccccccce-eeEeccc---cccc-cceeEEEECCc--ccc---cccchhhhccccceec
Confidence 7643 233332 3444555554432110 0000000 0111 12333332210 000 0001222233333222
Q ss_pred EEecCC-----------------------------ccCCc--------cccCCCCccEEEEeccCCCCCCC--CCCCCCC
Q 035555 600 LRFDCN-----------------------------VIPKN--------WIMSLTNLRYLSLSLFKNCEQLL--PLGKLQS 640 (767)
Q Consensus 600 l~~~~~-----------------------------~~~p~--------~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~ 640 (767)
...+.. ..+|. .+..+.+|+.+.+... ...+. .+.++++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~--~~~I~~~aF~~c~~ 289 (394)
T 4gt6_A 212 SDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDS--VVSIGTGAFMNCPA 289 (394)
T ss_dssp ECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTT--CCEECTTTTTTCTT
T ss_pred ccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccc--cceecCcccccccc
Confidence 211110 01222 2335677777777543 22222 3567788
Q ss_pred CCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccccCccCCccccccccCcccceEeeccCccccC
Q 035555 641 LEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELEEWDFGTATKGEIIIMPRLSCLIIFGCFKLKA 720 (767)
Q Consensus 641 L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 720 (767)
|+.+.+.. .++.++...+ .+|.+|+++.|.. +++.+. ..++..+.+|+.+.|.. .++.
T Consensus 290 L~~i~l~~--~i~~I~~~aF-----------~~c~~L~~i~lp~--~v~~I~-----~~aF~~C~~L~~i~ip~--sv~~ 347 (394)
T 4gt6_A 290 LQDIEFSS--RITELPESVF-----------AGCISLKSIDIPE--GITQIL-----DDAFAGCEQLERIAIPS--SVTK 347 (394)
T ss_dssp CCEEECCT--TCCEECTTTT-----------TTCTTCCEEECCT--TCCEEC-----TTTTTTCTTCCEEEECT--TCCB
T ss_pred cccccCCC--cccccCceee-----------cCCCCcCEEEeCC--cccEeh-----HhHhhCCCCCCEEEECc--ccCE
Confidence 88887743 3666665433 3778899888864 243332 23566788999999965 4777
Q ss_pred CC-cCCCCCCCCcEEEecCCC
Q 035555 721 LP-DLLLQKTTLQKLHIWGGC 740 (767)
Q Consensus 721 lp-~~~~~l~sL~~L~l~~~c 740 (767)
+. ..+.+|++|+.+++ .+.
T Consensus 348 I~~~aF~~C~~L~~i~~-~~~ 367 (394)
T 4gt6_A 348 IPESAFSNCTALNNIEY-SGS 367 (394)
T ss_dssp CCGGGGTTCTTCCEEEE-SSC
T ss_pred EhHhHhhCCCCCCEEEE-CCc
Confidence 76 45778999999999 554
No 208
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.00063 Score=70.93 Aligned_cols=179 Identities=15% Similarity=0.035 Sum_probs=94.0
Q ss_pred CccccchhHHHHHHHHHhcCCC-------CCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhh
Q 035555 97 SEIFGREKEKSELVNRLLCESS-------KEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALT 169 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~ 169 (767)
.++.|-++.+++|.+.+.-+-. .+-...+-|.++|++|.|||.||+++++. ....|-.+. ...+.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f~~v~------~s~l~ 219 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKFIRVS------GAELV 219 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEEEEEE------GGGGS
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCceEEE------hHHhh
Confidence 3578888888888766542100 01224567889999999999999999984 222221100 00000
Q ss_pred CCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCc--------Ch---h---hHHHHHHhhhcC--CCCcEEEEEcCchh
Q 035555 170 YSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE--------DF---Y---KWEQFYNCLKTC--LHGSKILITTRKET 233 (767)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------~~---~---~~~~l~~~l~~~--~~gs~ilvTtR~~~ 233 (767)
..........+.......-...+++|++|+++.- .. . ....++..+... ..+-.||.||...+
T Consensus 220 -sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd 298 (405)
T 4b4t_J 220 -QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLD 298 (405)
T ss_dssp -CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSS
T ss_pred -ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChh
Confidence 0000011111222222233457899999998531 00 0 122344434322 23444566666532
Q ss_pred H---Hhhh--cCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCc
Q 035555 234 V---ARIM--GSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLP 289 (767)
Q Consensus 234 v---~~~~--~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 289 (767)
. |-.. .-...+.++.-+.++-.++|..+.-.... ....+ ...|++.+.|.-
T Consensus 299 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 299 ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSCC----HHHHHHHCCSCC
T ss_pred hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccCC----HHHHHHHCCCCC
Confidence 2 1111 22568888888888888888766532211 11222 455777787754
No 209
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.60 E-value=8.6e-05 Score=70.94 Aligned_cols=42 Identities=24% Similarity=0.035 Sum_probs=29.5
Q ss_pred hHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 104 KEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 104 ~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
+.++.+.+++..... ....+.+.|+|++|+|||+||+++++.
T Consensus 36 ~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 36 KAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp HHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 455566666654321 112267899999999999999999874
No 210
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.00039 Score=73.55 Aligned_cols=51 Identities=24% Similarity=0.246 Sum_probs=37.8
Q ss_pred CccccchhHHHHHHHHHhcCCC-------CCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 97 SEIFGREKEKSELVNRLLCESS-------KEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.++.|-++.+++|.+.+.-.-. -+-...+-|.++|++|.|||+||+++++.
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4678999988888776642110 01235567999999999999999999984
No 211
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.57 E-value=0.0012 Score=65.52 Aligned_cols=185 Identities=13% Similarity=0.035 Sum_probs=91.0
Q ss_pred CCCccccchhHHHHHHHHHh---cCCCC---CCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHh
Q 035555 95 DESEIFGREKEKSELVNRLL---CESSK---EQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEAL 168 (767)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~---~~~~~---~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l 168 (767)
.-.+++|.+..++++.+.+. ..... +....+-|.|+|++|+||||||+.+++.. ...|-... ...+
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~--~~~~~~i~------~~~~ 81 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVPFFTIS------GSDF 81 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH--TCCEEEEC------SCSS
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc--CCCEEEEe------HHHH
Confidence 34578999988877765432 21100 01123458899999999999999998742 11111000 0000
Q ss_pred hCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCcC--------------hhhHHHHHHhhhcC--CCCcEEEEEcCch
Q 035555 169 TYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNED--------------FYKWEQFYNCLKTC--LHGSKILITTRKE 232 (767)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------------~~~~~~l~~~l~~~--~~gs~ilvTtR~~ 232 (767)
... ........+...+.......+.++++|++.... ......+...+... ..+..||.||...
T Consensus 82 ~~~-~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~ 160 (257)
T 1lv7_A 82 VEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRP 160 (257)
T ss_dssp TTS-CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCT
T ss_pred HHH-hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCc
Confidence 000 000112223333444444567899999982100 01222333333321 2344566666654
Q ss_pred h-HHhhh-c---CcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCC-CcchHH
Q 035555 233 T-VARIM-G---SADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKG-LPLVAK 293 (767)
Q Consensus 233 ~-v~~~~-~---~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~ 293 (767)
+ +.... . ....+.+...+.++-.+++....-... ...... ...+++.+.| .+--+.
T Consensus 161 ~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-l~~~~~----~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 161 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDID----AAIIARGTPGFSGADLA 222 (257)
T ss_dssp TTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCCHHHHH
T ss_pred hhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-CCcccc----HHHHHHHcCCCCHHHHH
Confidence 3 21111 1 134677777788887777776542211 111111 3346667777 554443
No 212
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.56 E-value=0.00021 Score=71.53 Aligned_cols=47 Identities=15% Similarity=0.180 Sum_probs=34.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..++|++..+.++.+.+..... ....|.|+|.+|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 4589999999888877654322 2245789999999999999999874
No 213
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.56 E-value=0.00044 Score=70.28 Aligned_cols=145 Identities=10% Similarity=-0.018 Sum_probs=90.3
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccc-hh-hhhhhHHHHHHHHHHHhhCCCCCccch
Q 035555 101 GREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDD-VK-KILRKEYGIARAIIEALTYSSSNFVEF 178 (767)
Q Consensus 101 Gr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~-~~-~~F~~~~~i~~~i~~~l~~~~~~~~~~ 178 (767)
|-++.++.|...+... ......++|+.|+||||+|+.+.+... .. .+.+. ..+. ........
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~---------~~l~-~~~~~~~i 64 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDV---------LEID-PEGENIGI 64 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE---------EEEC-CSSSCBCH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE---------EEEc-CCcCCCCH
Confidence 4566777787777543 257899999999999999999976310 00 01111 0000 01112223
Q ss_pred HHHHHHHHHhc----CCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCch-hHHhhhcCcceEecCCCChhH
Q 035555 179 QSLMQHIQKHV----AGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKE-TVARIMGSADIISVNVLSETE 253 (767)
Q Consensus 179 ~~~~~~l~~~l----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~l~~L~~~~ 253 (767)
+++.+.+...- .+++-++|+|++........+.++..+....+.+.+|++|.+. .+...+..- .+++.++++++
T Consensus 65 d~ir~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~ 143 (305)
T 2gno_A 65 DDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKE 143 (305)
T ss_dssp HHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHH
T ss_pred HHHHHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHH
Confidence 33333222211 2456799999998877777888888888766677777776543 333333334 89999999999
Q ss_pred HHHHHHHhc
Q 035555 254 CWLVFESLG 262 (767)
Q Consensus 254 ~~~l~~~~~ 262 (767)
..+.+.+..
T Consensus 144 i~~~L~~~~ 152 (305)
T 2gno_A 144 FRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988765
No 214
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.55 E-value=0.00039 Score=70.88 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=37.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..++|+...+.++.+.+..-.. ....|.|+|.+|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHh
Confidence 3589999999998888765332 2345789999999999999999873
No 215
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.54 E-value=0.00028 Score=82.14 Aligned_cols=152 Identities=19% Similarity=0.179 Sum_probs=82.8
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccc---hhh------hhhhHHHHHHHHHH
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDD---VKK------ILRKEYGIARAIIE 166 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~---~~~------~F~~~~~i~~~i~~ 166 (767)
-..++||+++++++.+.|... ...-+.|+|++|+|||++|+.+++... +.. .|... +..
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~------~~~ 252 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD------IGS 252 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC------CC-
T ss_pred CCCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc------HHH
Confidence 346899999999999999754 234578999999999999999987310 000 00000 000
Q ss_pred HhhCCCCCccchHHHHHHHHHhc-CCCeEEEEEeCCCCc--------ChhhHHHHHHhhhcCCCCcEEEEEcCchhHHhh
Q 035555 167 ALTYSSSNFVEFQSLMQHIQKHV-AGKKLLLVLDDVWNE--------DFYKWEQFYNCLKTCLHGSKILITTRKETVARI 237 (767)
Q Consensus 167 ~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 237 (767)
...+. ......+.....+.+.+ ..++.+|++|++... .......+...+-. ..+.++|.+|........
T Consensus 253 l~~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~~~~~~ 330 (758)
T 1r6b_X 253 LLAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNI 330 (758)
T ss_dssp --CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHHHCC
T ss_pred Hhccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCchHHhhh
Confidence 00001 11112232233333333 346789999999643 11111112222212 234456666654432211
Q ss_pred -------hcCcceEecCCCChhHHHHHHHHh
Q 035555 238 -------MGSADIISVNVLSETECWLVFESL 261 (767)
Q Consensus 238 -------~~~~~~~~l~~L~~~~~~~l~~~~ 261 (767)
......+.++..+.++..+++...
T Consensus 331 ~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l 361 (758)
T 1r6b_X 331 FEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_dssp CCCTTSSGGGEEEEECCCCCHHHHHHHHHHH
T ss_pred hhcCHHHHhCceEEEcCCCCHHHHHHHHHHH
Confidence 112346889999999988888754
No 216
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.00061 Score=72.21 Aligned_cols=179 Identities=14% Similarity=0.088 Sum_probs=94.4
Q ss_pred CccccchhHHHHHHHHHhcCCC-------CCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhh
Q 035555 97 SEIFGREKEKSELVNRLLCESS-------KEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALT 169 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~ 169 (767)
.++.|-++.+++|.+.+.-+-. .+-...+-|.++|++|.|||+||+++++. ....|-.+. ...+.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~~~v~------~s~l~ 252 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANFIFSP------ASGIV 252 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEEEEEE------GGGTC
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEEEEe------hhhhc
Confidence 4578898888887776543110 01235678999999999999999999984 222221100 00000
Q ss_pred CCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCc-----------Ch---hhHHHHHHhhhcC--CCCcEEEEEcCchh
Q 035555 170 YSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE-----------DF---YKWEQFYNCLKTC--LHGSKILITTRKET 233 (767)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~---~~~~~l~~~l~~~--~~gs~ilvTtR~~~ 233 (767)
..........+.......-...+++|++|+++.- +. .....++..+... ..+..||.||...+
T Consensus 253 -sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~ 331 (437)
T 4b4t_L 253 -DKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPD 331 (437)
T ss_dssp -CSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTT
T ss_pred -cccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCch
Confidence 0000111111222222233457899999999521 00 1122344444322 23456777776543
Q ss_pred HHh-hh--c--CcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCc
Q 035555 234 VAR-IM--G--SADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLP 289 (767)
Q Consensus 234 v~~-~~--~--~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 289 (767)
... .+ . -...+.++.-+.++-.++|..+...... ....+ ...+++.+.|.-
T Consensus 332 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 332 TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCC----HHHHHHTCCSCC
T ss_pred hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhCCCCC
Confidence 221 11 1 1457788877888888888766432211 11122 455777787754
No 217
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.53 E-value=0.00039 Score=71.29 Aligned_cols=51 Identities=24% Similarity=0.319 Sum_probs=37.2
Q ss_pred CccccchhHHHHHHHHHhcC--CCC------CCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 97 SEIFGREKEKSELVNRLLCE--SSK------EQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~--~~~------~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..++|+++.++.+...+... ... .......+.++|++|+|||++|+.+++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999998877541 000 0012346889999999999999999873
No 218
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.0011 Score=70.12 Aligned_cols=179 Identities=15% Similarity=0.060 Sum_probs=93.6
Q ss_pred CccccchhHHHHHHHHHhc----CCC---CCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhh
Q 035555 97 SEIFGREKEKSELVNRLLC----ESS---KEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALT 169 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~ 169 (767)
.++.|-++.+++|.+.+.- +.- -+-...+-|.++|++|.|||.||+++++. ....|-.+. ...+.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~fi~vs------~s~L~ 280 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATFIRVI------GSELV 280 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEEEEEE------GGGGC
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCeEEEE------hHHhh
Confidence 3578999888888775432 000 01235677899999999999999999984 222221100 00000
Q ss_pred CCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCc--------C---h---hhHHHHHHhhhcC--CCCcEEEEEcCchh
Q 035555 170 YSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE--------D---F---YKWEQFYNCLKTC--LHGSKILITTRKET 233 (767)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------~---~---~~~~~l~~~l~~~--~~gs~ilvTtR~~~ 233 (767)
..........+.......-...+++|++|+++.. . . .....++..+... ..+..||.||....
T Consensus 281 -sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd 359 (467)
T 4b4t_H 281 -QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPN 359 (467)
T ss_dssp -CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTT
T ss_pred -cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcc
Confidence 0000111112222222333457899999998531 0 0 0112233333322 23334555665432
Q ss_pred H---Hhhh--cCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCc
Q 035555 234 V---ARIM--GSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLP 289 (767)
Q Consensus 234 v---~~~~--~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 289 (767)
. |-.. .-...+.++.-+.++-.++|..+.-... ....-+ ...|++.+.|.-
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~-l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS-VERGIR----WELISRLCPNST 415 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC-BCSSCC----HHHHHHHCCSCC
T ss_pred cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC-CCCCCC----HHHHHHHCCCCC
Confidence 2 1111 1256788888888888888876653221 111222 355777787754
No 219
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.43 E-value=0.0017 Score=69.96 Aligned_cols=180 Identities=16% Similarity=0.063 Sum_probs=93.9
Q ss_pred CCccccchhHHHHHHHHHhcCCC------CCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhh
Q 035555 96 ESEIFGREKEKSELVNRLLCESS------KEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALT 169 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~ 169 (767)
-.+++|.++.++++.+....-.. -+....+-|.|+|++|+|||+||+++++.. ...|-... ...+.
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~--~~~f~~is------~~~~~ 86 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA--NVPFFHIS------GSDFV 86 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH--TCCEEEEE------GGGTT
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc--CCCeeeCC------HHHHH
Confidence 34689999887777665432100 001123348899999999999999998742 11111100 00000
Q ss_pred CCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCcC--------------hhhHHHHHHhhhcC--CCCcEEEEEcCchh
Q 035555 170 YSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNED--------------FYKWEQFYNCLKTC--LHGSKILITTRKET 233 (767)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------------~~~~~~l~~~l~~~--~~gs~ilvTtR~~~ 233 (767)
... ...........+.....+.+.+|+||++..-. .....++...+... ..+..||.||...+
T Consensus 87 ~~~-~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 87 ELF-VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp TCC-TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred HHH-hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 000 00111222333444445678999999984310 01223344433321 23556666776654
Q ss_pred HHh-h-hc---CcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCc
Q 035555 234 VAR-I-MG---SADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLP 289 (767)
Q Consensus 234 v~~-~-~~---~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 289 (767)
... . .. -...+.++..+.++-.+++..+.-... .....+ ...|++.+.|..
T Consensus 166 ~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~-l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 166 ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP-LAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCC
T ss_pred hhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC-Ccchhh----HHHHHHhcCCCc
Confidence 321 1 11 134778888888887888876653221 111112 344778888877
No 220
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.39 E-value=0.001 Score=77.19 Aligned_cols=144 Identities=17% Similarity=0.118 Sum_probs=79.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccc---h-----hhh-hhhHHHHHHHHHH
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDD---V-----KKI-LRKEYGIARAIIE 166 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~---~-----~~~-F~~~~~i~~~i~~ 166 (767)
-..++||+++++++.+.|.... ..-+.++|++|+|||++|+.+++... + ... |....
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-------- 244 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-------- 244 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------
T ss_pred CCCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--------
Confidence 3469999999999999997542 23478999999999999999987410 0 001 11100
Q ss_pred HhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCchhHHh-------hhc
Q 035555 167 ALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKETVAR-------IMG 239 (767)
Q Consensus 167 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~-------~~~ 239 (767)
+.. ....-...+...+......++.+|++|.. . .....+...+. ....++|.||....... ...
T Consensus 245 --g~~-~~G~~e~~l~~~~~~~~~~~~~iLfiD~~--~--~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~r 315 (758)
T 3pxi_A 245 --GTK-YRGEFEDRLKKVMDEIRQAGNIILFIDAA--I--DASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALER 315 (758)
T ss_dssp -----------CTTHHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred --ccc-ccchHHHHHHHHHHHHHhcCCEEEEEcCc--h--hHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHh
Confidence 000 00000111222333333467889999921 1 11122222232 22345666666544211 112
Q ss_pred CcceEecCCCChhHHHHHHHHhc
Q 035555 240 SADIISVNVLSETECWLVFESLG 262 (767)
Q Consensus 240 ~~~~~~l~~L~~~~~~~l~~~~~ 262 (767)
....+.++..+.++..+++....
T Consensus 316 Rf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 316 RFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTT
T ss_pred hCcEEEeCCCCHHHHHHHHHHHH
Confidence 23578999999999999998654
No 221
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.39 E-value=0.0012 Score=71.57 Aligned_cols=96 Identities=13% Similarity=0.054 Sum_probs=58.6
Q ss_pred EEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEE---------cC----chhH-HhhhcCcceEecCCCChhHHHHHHH
Q 035555 194 LLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILIT---------TR----KETV-ARIMGSADIISVNVLSETECWLVFE 259 (767)
Q Consensus 194 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT---------tR----~~~v-~~~~~~~~~~~l~~L~~~~~~~l~~ 259 (767)
-++++|++...+....+.+...+.......-|+.| |. ...+ .........+.+.+++.++..+++.
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCCEEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 38999999877777788888877765444322344 32 1111 1233445568999999999999998
Q ss_pred HhcCCCCCCcchhhHHHHHHHHHhhc-CCCcchHH
Q 035555 260 SLGFSGKSMEERENLEKIGREIIRKC-KGLPLVAK 293 (767)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~PLai~ 293 (767)
..+-....... .+....|++.+ +|.|..+.
T Consensus 377 ~~~~~~~~~~~----~~~~~~i~~~a~~g~~r~a~ 407 (456)
T 2c9o_A 377 IRAQTEGINIS----EEALNHLGEIGTKTTLRYSV 407 (456)
T ss_dssp HHHHHHTCCBC----HHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHhCCCCC----HHHHHHHHHHccCCCHHHHH
Confidence 76521111111 23356677776 67775443
No 222
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.00043 Score=73.31 Aligned_cols=178 Identities=17% Similarity=0.135 Sum_probs=91.2
Q ss_pred CccccchhHHHHHHHHHhc----CCC---CCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhh
Q 035555 97 SEIFGREKEKSELVNRLLC----ESS---KEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALT 169 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~ 169 (767)
.++.|-++.+++|.+.+.. +.- .+-...+-|.++|++|.|||.||+++++. ....|-.+. ...+.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f~~v~------~s~l~ 252 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATFLKLA------APQLV 252 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEEEEEE------GGGGC
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCEEEEe------hhhhh
Confidence 4578999988888776432 100 01235678999999999999999999984 222221100 00000
Q ss_pred CCCCCccchHHHHHHHH-HhcCCCeEEEEEeCCCC-------cCh---h----hHHHHHHhhhcC--CCCcEEEEEcCch
Q 035555 170 YSSSNFVEFQSLMQHIQ-KHVAGKKLLLVLDDVWN-------EDF---Y----KWEQFYNCLKTC--LHGSKILITTRKE 232 (767)
Q Consensus 170 ~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~-------~~~---~----~~~~l~~~l~~~--~~gs~ilvTtR~~ 232 (767)
. .. ..+.+...+.+. ..-...+++|++|+++. ... . ....++..+... ..+-.||.||...
T Consensus 253 ~-~~-vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp 330 (434)
T 4b4t_M 253 Q-MY-IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRV 330 (434)
T ss_dssp S-SC-SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSC
T ss_pred h-cc-cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCc
Confidence 0 00 011111222222 22234689999999831 000 0 112233334322 2334555577654
Q ss_pred hHHh-hh----cCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCc
Q 035555 233 TVAR-IM----GSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLP 289 (767)
Q Consensus 233 ~v~~-~~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 289 (767)
+... .+ .-...+.++.-+.++-.++|..+.-... ....-+ ...|++.+.|.-
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMT-TDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSC-BCSCCC----HHHHHHHCSSCC
T ss_pred hhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCC-CCCcCC----HHHHHHhCCCCC
Confidence 3221 11 1245788888888888888875542111 111112 355777777753
No 223
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.35 E-value=0.00041 Score=71.97 Aligned_cols=148 Identities=14% Similarity=0.130 Sum_probs=81.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhh---H-HHHHHHHHHHhhCCC
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK---E-YGIARAIIEALTYSS 172 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~---~-~~i~~~i~~~l~~~~ 172 (767)
..++|+++.++.+...+.... -+.++|++|+|||+||+.+.+.. ...|.. . .....++........
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~--------~vll~G~pGtGKT~la~~la~~~--~~~~~~i~~~~~~~~~~l~g~~~~~~ 96 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG--------HILLEGVPGLAKTLSVNTLAKTM--DLDFHRIQFTPDLLPSDLIGTMIYNQ 96 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--------CEEEESCCCHHHHHHHHHHHHHT--TCCEEEEECCTTCCHHHHHEEEEEET
T ss_pred cceeCcHHHHHHHHHHHHcCC--------eEEEECCCCCcHHHHHHHHHHHh--CCCeEEEecCCCCChhhcCCceeecC
Confidence 358999999999988886532 48899999999999999998731 111110 0 000000000000000
Q ss_pred CCccchHHHHHHHHHhcCC--CeEEEEEeCCCCcChhhHHHHHHhhhcC-----------CCCcEEEEEcCchh------
Q 035555 173 SNFVEFQSLMQHIQKHVAG--KKLLLVLDDVWNEDFYKWEQFYNCLKTC-----------LHGSKILITTRKET------ 233 (767)
Q Consensus 173 ~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTtR~~~------ 233 (767)
.. ... ....+ ...++++|++..........+...+... .....|+.|+....
T Consensus 97 ~~-~~~--------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~ 167 (331)
T 2r44_A 97 HK-GNF--------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYP 167 (331)
T ss_dssp TT-TEE--------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCC
T ss_pred CC-Cce--------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCccc
Confidence 00 000 00001 1258999999766655566666655532 23344555555322
Q ss_pred HH-hhhcCcc-eEecCCCChhHHHHHHHHhcC
Q 035555 234 VA-RIMGSAD-IISVNVLSETECWLVFESLGF 263 (767)
Q Consensus 234 v~-~~~~~~~-~~~l~~L~~~~~~~l~~~~~~ 263 (767)
+. ....... .+.++..+.++-.+++.+...
T Consensus 168 l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 168 LPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred CCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 11 1112222 588888899998888887653
No 224
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.35 E-value=3.2e-05 Score=77.75 Aligned_cols=52 Identities=31% Similarity=0.292 Sum_probs=35.7
Q ss_pred CCccccchhHHHHHHHHHhcCCCC------CCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 96 ESEIFGREKEKSELVNRLLCESSK------EQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
-.+++|.++.++.+.+.+..-... +....+-|.|+|++|+|||+||+++++.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 356999998888887765410000 0012234779999999999999999874
No 225
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.00089 Score=70.04 Aligned_cols=178 Identities=16% Similarity=0.103 Sum_probs=92.1
Q ss_pred CccccchhHHHHHHHHHhcCCC-------CCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhh
Q 035555 97 SEIFGREKEKSELVNRLLCESS-------KEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALT 169 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~ 169 (767)
.++.|-++.+++|.+.+.-.-. .+-...+-|.++|++|.|||.||+++++. ....|-.+. ...+.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~fi~v~------~s~l~ 253 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATFLRIV------GSELI 253 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEEEEEE------SGGGC
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCEEEEE------HHHhh
Confidence 3577888888888776532100 01234577999999999999999999984 222221100 00000
Q ss_pred CCCCCccchHHHHHHH-HHhcCCCeEEEEEeCCCCc-----------C---hhhHHHHHHhhhcC--CCCcEEEEEcCch
Q 035555 170 YSSSNFVEFQSLMQHI-QKHVAGKKLLLVLDDVWNE-----------D---FYKWEQFYNCLKTC--LHGSKILITTRKE 232 (767)
Q Consensus 170 ~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~~-----------~---~~~~~~l~~~l~~~--~~gs~ilvTtR~~ 232 (767)
.....+.+...+.+ ...-...+++|++|+++.. + ......++..+... ..+..||.||...
T Consensus 254 --sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrp 331 (437)
T 4b4t_I 254 --QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKI 331 (437)
T ss_dssp --CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCS
T ss_pred --hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCh
Confidence 00011112222222 2222356899999998521 0 01122333333322 2344566666654
Q ss_pred hHHh-hh-c---CcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCc
Q 035555 233 TVAR-IM-G---SADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLP 289 (767)
Q Consensus 233 ~v~~-~~-~---~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 289 (767)
+... .+ . -...+.++.-+.++-.++|..+.-... .....+ ...|++.+.|.-
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~-l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN-LSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC-BCSCCC----HHHHHHHCCSCC
T ss_pred hhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC-CCCcCC----HHHHHHhCCCCC
Confidence 3321 11 1 134677887788888888876653221 111222 355677777653
No 226
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.28 E-value=0.0023 Score=73.16 Aligned_cols=177 Identities=12% Similarity=0.080 Sum_probs=97.5
Q ss_pred CccccchhHHHHHHHHHhc----CCC---CCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhh--HHHHHHHHHHH
Q 035555 97 SEIFGREKEKSELVNRLLC----ESS---KEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK--EYGIARAIIEA 167 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~~i~~~i~~~ 167 (767)
.++.|-++.+++|.+.+.- +.- -+-...+-|.++|++|+|||+||+++++.. ..+|-. ..++
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el--g~~~~~v~~~~l------- 274 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAFFFLINGPEI------- 274 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT--TCEEEEEEHHHH-------
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCeEEEEEhHHh-------
Confidence 4578888888887776532 110 022356789999999999999999999853 222221 1111
Q ss_pred hhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCc-------C----hhhHHHHHHhhhcC--CCCcEEEEEcCchh-
Q 035555 168 LTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE-------D----FYKWEQFYNCLKTC--LHGSKILITTRKET- 233 (767)
Q Consensus 168 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------~----~~~~~~l~~~l~~~--~~gs~ilvTtR~~~- 233 (767)
.. .........+........+..+.+|++|+++.- . .....++...+... ..+..||.||...+
T Consensus 275 -~s-k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 275 -MS-KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp -HS-SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTT
T ss_pred -hc-ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhh
Confidence 01 111122233344444555678899999998421 0 01122333333322 12334555665432
Q ss_pred HHhhh----cCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCc
Q 035555 234 VARIM----GSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLP 289 (767)
Q Consensus 234 v~~~~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 289 (767)
+-..+ .-...+.+..-+.++-.++|..+.-... .....+ ...|++.+.|.-
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~-~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVD----LEQVANETHGHV 407 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE-ECTTCC----HHHHHHHCCSCC
T ss_pred cCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC-CCcccC----HHHHHHhcCCCC
Confidence 21111 1245788888888888888887652211 112222 456778887765
No 227
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.16 E-value=0.00031 Score=69.51 Aligned_cols=61 Identities=28% Similarity=0.286 Sum_probs=41.4
Q ss_pred ccCCcccEEeecCCccccc---cchhhcCCCCCcEEEccCCccccccCcccccCc--CCcEeeCCCCCC
Q 035555 463 EKLIHLKYLNLSSQKKIKR---LPETLCELYNLECLAISFCTNLRQLPQGIGKLR--KLMYLDNDYTNS 526 (767)
Q Consensus 463 ~~l~~L~~L~L~~~~~~~~---lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~--~L~~L~l~~~~~ 526 (767)
.++++|+.|+|++|. +.. +|..+..+++|++|+|++|. +..+ ..+..+. +|++|++.+|..
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTT
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcC
Confidence 356778888888887 554 34556678888888888877 5544 2344444 788888888743
No 228
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.15 E-value=0.0033 Score=63.68 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=22.4
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..+.+.++|++|+|||+||+++++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999984
No 229
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.12 E-value=0.00034 Score=62.86 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..++|+|+.|+|||||++.+++.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999873
No 230
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.08 E-value=0.00023 Score=66.81 Aligned_cols=64 Identities=16% Similarity=0.035 Sum_probs=43.2
Q ss_pred cccccCCcccEEeecCC-ccccc-----cchhhcCCCCCcEEEccCCcccc----ccCcccccCcCCcEeeCCCC
Q 035555 460 TNIEKLIHLKYLNLSSQ-KKIKR-----LPETLCELYNLECLAISFCTNLR----QLPQGIGKLRKLMYLDNDYT 524 (767)
Q Consensus 460 ~~~~~l~~L~~L~L~~~-~~~~~-----lp~~~~~l~~L~~L~L~~~~~l~----~lp~~~~~l~~L~~L~l~~~ 524 (767)
..+...+.|+.|+|++| . ++. +...+...++|++|+|++|..-. .+...+...++|++|++++|
T Consensus 30 ~~l~~~~~L~~L~L~~n~~-i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMN-IPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHTTCTTCCEEECTTCTT-CCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHhcCCCCCEEEecCCCC-CCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 34556778888888887 5 442 45556677888888888887321 23334556677888888887
No 231
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.08 E-value=0.0026 Score=73.88 Aligned_cols=154 Identities=12% Similarity=0.178 Sum_probs=85.6
Q ss_pred CccccchhHHHHHHHHHhcCCCC---CCCCCEEEEEEccCCChHHHHHHHHHcccc-hhhhhhhHHHHHHHHHHHhhCCC
Q 035555 97 SEIFGREKEKSELVNRLLCESSK---EQKGPCVISLVGMGGIGKTTLAQFAYNNDD-VKKILRKEYGIARAIIEALTYSS 172 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~~i~~~i~~~l~~~~ 172 (767)
..++|.+..++.+.+.+...... .......+.++|++|+|||++|+++++... -...|-.. . +..+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i-----~-~s~~~~-- 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRI-----D-MSEYME-- 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE-----E-GGGGCS--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE-----e-chhccc--
Confidence 45899999999888887653221 122344799999999999999999987310 01111000 0 000000
Q ss_pred CCccchHHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCC-----------CCcEEEEEcCc-----hhH--
Q 035555 173 SNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCL-----------HGSKILITTRK-----ETV-- 234 (767)
Q Consensus 173 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~-----~~v-- 234 (767)
........+...++. ...-+|+||++..........+...+..+. ...+||.||.. ..+
T Consensus 563 ~~~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~ 639 (758)
T 3pxi_A 563 KHSTSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMG 639 (758)
T ss_dssp SCCCC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHH
T ss_pred ccccccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHH
Confidence 000001122222222 234489999997777677777777776531 34578888873 111
Q ss_pred --Hh-----hhcC-cceEecCCCChhHHHHHHHHh
Q 035555 235 --AR-----IMGS-ADIISVNVLSETECWLVFESL 261 (767)
Q Consensus 235 --~~-----~~~~-~~~~~l~~L~~~~~~~l~~~~ 261 (767)
.. .... ...+.+.+++.++..+++...
T Consensus 640 ~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 640 ELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp HHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred HHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 11 1111 247888888888877776554
No 232
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.02 E-value=0.0077 Score=59.52 Aligned_cols=177 Identities=12% Similarity=0.098 Sum_probs=84.4
Q ss_pred CCccccchhHHHHHHHHHhcCCC-------CCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhh--HHHHHHHHHH
Q 035555 96 ESEIFGREKEKSELVNRLLCESS-------KEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK--EYGIARAIIE 166 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~~i~~~i~~ 166 (767)
-.+++|.++.+.++.+....-.. +-... +-+.|+|++|+||||||+.++.... ..|-. ...+ ..
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~g~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~----~~ 87 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF----VE 87 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCC-SEEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHH----HH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCC-CeEEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHH----HH
Confidence 35688988766665543321000 00111 2389999999999999999987422 11110 1111 00
Q ss_pred HhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCc----------Chhh----HHHHHHhhhcCC--CCcEEEEEcC
Q 035555 167 ALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE----------DFYK----WEQFYNCLKTCL--HGSKILITTR 230 (767)
Q Consensus 167 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~----~~~l~~~l~~~~--~gs~ilvTtR 230 (767)
. ... .....+...++..-.....++++|++... .... ...+...+..+. ....++.||.
T Consensus 88 ~----~~~-~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~ 162 (254)
T 1ixz_A 88 M----FVG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATN 162 (254)
T ss_dssp S----CTT-HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEES
T ss_pred H----Hhh-HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccC
Confidence 0 000 01111222222222345689999998310 0011 123333333222 2223444555
Q ss_pred chhHHh-hh----cCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCc
Q 035555 231 KETVAR-IM----GSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLP 289 (767)
Q Consensus 231 ~~~v~~-~~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 289 (767)
...+.. .. .....+.++..+.++-.+++...+-.. ....... ...+++.+.|.-
T Consensus 163 ~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~-~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 163 RPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp CGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS-CBCTTCC----HHHHHHTCTTCC
T ss_pred CchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC-CCCcccC----HHHHHHHcCCCC
Confidence 543321 11 124577888888888888877654221 1111111 334666666654
No 233
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.86 E-value=0.015 Score=61.23 Aligned_cols=73 Identities=10% Similarity=0.006 Sum_probs=42.5
Q ss_pred eeeeeccC-CCcccc-cccccCCcccEEeecCCccccccc-hhhcCCCCCcEEEccCCccccccCcccccCcCCcEeeCC
Q 035555 446 CRRWRCDN-YIKEIP-TNIEKLIHLKYLNLSSQKKIKRLP-ETLCELYNLECLAISFCTNLRQLPQGIGKLRKLMYLDND 522 (767)
Q Consensus 446 ~L~~l~l~-~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~ 522 (767)
.|+...+. +++.++ ..|.++.+|+.+.|..+ ++.++ .++.++ +|+.+.+..+ +..++...-...+|+.+.+.
T Consensus 47 ~i~~v~ip~~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~~L~~i~lp 121 (379)
T 4h09_A 47 RISEVRVNSGITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGTDLDDFEFP 121 (379)
T ss_dssp GCSEEEECTTEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTCCCSEEECC
T ss_pred CCEEEEeCCCccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCce--eeEeccceeccCCcccccCC
Confidence 44444444 456665 45788888888888654 55665 345555 5666666432 44555433233467777765
Q ss_pred C
Q 035555 523 Y 523 (767)
Q Consensus 523 ~ 523 (767)
.
T Consensus 122 ~ 122 (379)
T 4h09_A 122 G 122 (379)
T ss_dssp T
T ss_pred C
Confidence 4
No 234
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.86 E-value=0.02 Score=60.38 Aligned_cols=102 Identities=14% Similarity=0.135 Sum_probs=59.0
Q ss_pred ccCCCCccEEEEeccCCCCCCC--CCCCCCCCCeeeecCCCCceEecccccCCCCCCCCccccCCcccceeeccCccccc
Q 035555 612 IMSLTNLRYLSLSLFKNCEQLL--PLGKLQSLEYLQIGGMHGVKRVGNEFLGVESDTNGSSVIAFPKLRELKFSYMEELE 689 (767)
Q Consensus 612 ~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 689 (767)
+..+.+|+.+.+..+ ++.+. .+..+.+|+.+.+.. +++.++... +.+|++|+.+.+.++ .++
T Consensus 236 f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~a-----------F~~c~~L~~i~l~~~-~i~ 299 (379)
T 4h09_A 236 FYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLL-----------CSGCSNLTKVVMDNS-AIE 299 (379)
T ss_dssp TTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC--CCSEECTTT-----------TTTCTTCCEEEECCT-TCC
T ss_pred ccCCccceEEEcCCC--ccEeCccccceeehhccccccc--cceeccccc-----------ccccccccccccccc-ccc
Confidence 335566666666432 33332 245566666666643 244444332 236777888877653 233
Q ss_pred cCccCCccccccccCcccceEeeccCccccCCC-cCCCCCCCCcEEEe
Q 035555 690 EWDFGTATKGEIIIMPRLSCLIIFGCFKLKALP-DLLLQKTTLQKLHI 736 (767)
Q Consensus 690 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~sL~~L~l 736 (767)
.+. ...+..+++|+.+.|.. .++.+. ..+.++++|+.+.|
T Consensus 300 ~I~-----~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 300 TLE-----PRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp EEC-----TTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred eeh-----hhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 332 23456778888888864 366665 34667788888877
No 235
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.86 E-value=0.00067 Score=78.95 Aligned_cols=129 Identities=16% Similarity=0.188 Sum_probs=70.6
Q ss_pred CccccchhHHHHHHHHHhcCCC---CCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhh---hhHHHHHH-HHHHHhh
Q 035555 97 SEIFGREKEKSELVNRLLCESS---KEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKIL---RKEYGIAR-AIIEALT 169 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~~i~~-~i~~~l~ 169 (767)
..++|.++.++.+...+..... ..+.....+.++|++|+|||++|+.+.+.. ...| +.. .... .....+-
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l--~~~~~~i~~s-~~~~~~~~~~l~ 534 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--GIELLRFDMS-EYMERHTVSRLI 534 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH--TCEEEEEEGG-GCSSSSCCSSSC
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh--cCCEEEEech-hhcchhhHhhhc
Confidence 3588999999888877753221 012244579999999999999999998732 1111 110 0000 0000000
Q ss_pred CCCCCccc---hHHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCC-----------CCcEEEEEcCc
Q 035555 170 YSSSNFVE---FQSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCL-----------HGSKILITTRK 231 (767)
Q Consensus 170 ~~~~~~~~---~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 231 (767)
+..+.... ...+...++. ....+++||++..........+...+..+. ....||.||..
T Consensus 535 g~~~g~~g~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~ 607 (758)
T 1r6b_X 535 GAPPGYVGFDQGGLLTDAVIK---HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 607 (758)
T ss_dssp CCCSCSHHHHHTTHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECS
T ss_pred CCCCCCcCccccchHHHHHHh---CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCc
Confidence 11111111 1122222322 346789999997766666777777776431 23457777754
No 236
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.83 E-value=0.0065 Score=65.87 Aligned_cols=177 Identities=13% Similarity=0.079 Sum_probs=89.0
Q ss_pred CCCccccchhHHHHHHHHHh---cCCCC---CCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHh
Q 035555 95 DESEIFGREKEKSELVNRLL---CESSK---EQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEAL 168 (767)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~---~~~~~---~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l 168 (767)
.-.+++|.++.+.++.+... ....- +-.-.+-|.|+|++|+||||||++++.... ..|-. +
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~--~~~i~-----------i 95 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--VPFIT-----------A 95 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CCEEE-----------E
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--CCEEE-----------E
Confidence 34578999887766655432 21100 001123489999999999999999987422 11100 0
Q ss_pred hCCCCCccchHHHHHHHHHhcC----CCeEEEEEeCCCCcC----------hhh----HHHHHHhhhcC--CCCcEEEEE
Q 035555 169 TYSSSNFVEFQSLMQHIQKHVA----GKKLLLVLDDVWNED----------FYK----WEQFYNCLKTC--LHGSKILIT 228 (767)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~~l~----~k~~LlVlDdv~~~~----------~~~----~~~l~~~l~~~--~~gs~ilvT 228 (767)
....-...-.......++...+ ..+.++++|++.... ... ..++...+..+ ..+..|+.|
T Consensus 96 ~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAa 175 (499)
T 2dhr_A 96 SGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAA 175 (499)
T ss_dssp EGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEEC
T ss_pred ehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEe
Confidence 0000000001111222333332 245799999984210 111 22344334332 233445556
Q ss_pred cCchhHHh-hh----cCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCc
Q 035555 229 TRKETVAR-IM----GSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLP 289 (767)
Q Consensus 229 tR~~~v~~-~~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 289 (767)
|...++.. .. .....+.++..+.++-.+++..++-... ...... ...|++.+.|..
T Consensus 176 tn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~-l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 176 TNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-LAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSC-CCCSST----THHHHTTSCSCC
T ss_pred cCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCC-CChHHH----HHHHHHhcCCCC
Confidence 66554321 11 1235788888888888888876652211 111111 345777777765
No 237
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.82 E-value=0.0019 Score=71.48 Aligned_cols=51 Identities=27% Similarity=0.357 Sum_probs=35.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.+++|-++..+.+.+.+.-..-.......++.++|++|+||||||+.++..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 357898888777765443211001124568999999999999999999873
No 238
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.81 E-value=0.0045 Score=71.85 Aligned_cols=158 Identities=11% Similarity=0.061 Sum_probs=83.5
Q ss_pred CCccccchhHHHHHHHHHhcC----C---CCCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHh
Q 035555 96 ESEIFGREKEKSELVNRLLCE----S---SKEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEAL 168 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~----~---~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l 168 (767)
-.+++|.++.+++|.+++... . .-.-.....|.|+|++|+||||||+.+... ....|-.+. ...+
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~i~v~------~~~l 274 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFFFLIN------GPEI 274 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEEEEEE------HHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcEEEEE------chHh
Confidence 356899999999988877531 0 001124457999999999999999999874 222221100 0000
Q ss_pred hCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCc--------C---hhhHHHHHHhhhcC--CCCcEEEEEcCchh-H
Q 035555 169 TYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE--------D---FYKWEQFYNCLKTC--LHGSKILITTRKET-V 234 (767)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------~---~~~~~~l~~~l~~~--~~gs~ilvTtR~~~-v 234 (767)
... ........+...++......+.++++|++... . ......+...+... ..+..+|.||.... +
T Consensus 275 ~~~-~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 275 MSK-LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SSS-STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred hhh-hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 000 00111122222333333456789999998321 0 01122333333322 22345555655432 2
Q ss_pred Hhhh----cCcceEecCCCChhHHHHHHHHhc
Q 035555 235 ARIM----GSADIISVNVLSETECWLVFESLG 262 (767)
Q Consensus 235 ~~~~----~~~~~~~l~~L~~~~~~~l~~~~~ 262 (767)
...+ .....+.+...+.++-.+++...+
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 1111 113457788888888888887664
No 239
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.79 E-value=0.022 Score=57.12 Aligned_cols=179 Identities=13% Similarity=0.109 Sum_probs=85.6
Q ss_pred CCCccccchhHHHHHHHHHhcCCCC------CCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhh--HHHHHHHHHH
Q 035555 95 DESEIFGREKEKSELVNRLLCESSK------EQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRK--EYGIARAIIE 166 (767)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~~i~~~i~~ 166 (767)
.-.+++|.++.++++.+....-... +-.-.+-|.|+|++|+||||||+.++.... ..|-. ...+ ..
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~----~~ 111 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF----VE 111 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHH----HH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHH----HH
Confidence 3457899987766665543211000 000112389999999999999999987422 11100 0111 00
Q ss_pred HhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCc----------ChhhH----HHHHHhhhcCC--CCcEEEEEcC
Q 035555 167 ALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE----------DFYKW----EQFYNCLKTCL--HGSKILITTR 230 (767)
Q Consensus 167 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~----~~l~~~l~~~~--~gs~ilvTtR 230 (767)
. ... .....+....+..-...+.++|+|++... ....+ ..+...+..+. ....++.||.
T Consensus 112 ~----~~~-~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~ 186 (278)
T 1iy2_A 112 M----FVG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATN 186 (278)
T ss_dssp S----TTT-HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEES
T ss_pred H----Hhh-HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecC
Confidence 0 000 00111222222222345689999998310 00111 22333333221 1223444555
Q ss_pred chhHHh-h-h---cCcceEecCCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCc
Q 035555 231 KETVAR-I-M---GSADIISVNVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLP 289 (767)
Q Consensus 231 ~~~v~~-~-~---~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 289 (767)
...+.. . . .....+.++..+.++-.+++...+-.. ....... ...+++.+.|..
T Consensus 187 ~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~-~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 187 RPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp CTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS-CBCTTCC----HHHHHHTCTTCC
T ss_pred CchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC-CCCcccC----HHHHHHHcCCCC
Confidence 443321 1 1 124578888888888888887664221 1111111 334677777755
No 240
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.78 E-value=0.001 Score=65.75 Aligned_cols=77 Identities=22% Similarity=0.144 Sum_probs=57.8
Q ss_pred cCceeeeeccC--CCc---ccccccccCCcccEEeecCCccccccchhhcCCC--CCcEEEccCCccccccCc-------
Q 035555 443 LIKCRRWRCDN--YIK---EIPTNIEKLIHLKYLNLSSQKKIKRLPETLCELY--NLECLAISFCTNLRQLPQ------- 508 (767)
Q Consensus 443 ~~~~L~~l~l~--~~~---~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~--~L~~L~L~~~~~l~~lp~------- 508 (767)
.++.|+.|+++ .+. .+|..++.+++|++|+|++|. +..+. .+..+. +|++|+|++|.....+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 46678888888 333 455777899999999999999 77663 244444 999999999994455552
Q ss_pred ccccCcCCcEeeC
Q 035555 509 GIGKLRKLMYLDN 521 (767)
Q Consensus 509 ~~~~l~~L~~L~l 521 (767)
.+..+++|+.||-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 3567889988873
No 241
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.73 E-value=0.017 Score=57.58 Aligned_cols=152 Identities=14% Similarity=0.110 Sum_probs=77.7
Q ss_pred CccccchhHHHHHHHHHhcCCC--------CCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHh
Q 035555 97 SEIFGREKEKSELVNRLLCESS--------KEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEAL 168 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~--------~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l 168 (767)
.++.|-++.+++|.+.+..+-. +-..... +.++|++|+||||||+.++..... .|-. +
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~~~--~~i~-----------i 75 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANESGL--NFIS-----------V 75 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHTTC--EEEE-----------E
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHcCC--CEEE-----------E
Confidence 4578888888887765431100 0011222 999999999999999999874221 1100 0
Q ss_pred hCCCCCc---cchHHHHHHHHHh-cCCCeEEEEEeCCCCcC-----------hhhHHHHHHhhhcC--CCCcEEEEEcCc
Q 035555 169 TYSSSNF---VEFQSLMQHIQKH-VAGKKLLLVLDDVWNED-----------FYKWEQFYNCLKTC--LHGSKILITTRK 231 (767)
Q Consensus 169 ~~~~~~~---~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~~~--~~gs~ilvTtR~ 231 (767)
.+..... .........+.+. -...+.++++|++.... ......+...+..+ ....-++.+|..
T Consensus 76 ~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~ 155 (274)
T 2x8a_A 76 KGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNR 155 (274)
T ss_dssp ETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESC
T ss_pred EcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCC
Confidence 0000000 0111112222222 13457899999985310 01122333334332 123345556665
Q ss_pred hhHHhh-h----cCcceEecCCCChhHHHHHHHHhc
Q 035555 232 ETVARI-M----GSADIISVNVLSETECWLVFESLG 262 (767)
Q Consensus 232 ~~v~~~-~----~~~~~~~l~~L~~~~~~~l~~~~~ 262 (767)
.++... . .-...+.++..+.++-.+++....
T Consensus 156 p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 156 PDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp GGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred hhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 443221 1 224577888888888888887664
No 242
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.73 E-value=0.003 Score=68.57 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=36.2
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 98 EIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.++|+++.++.+...+... .-|.++|++|+|||+||+.+++.
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 5899999999988887653 25889999999999999999874
No 243
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.71 E-value=0.00059 Score=69.61 Aligned_cols=43 Identities=23% Similarity=0.148 Sum_probs=30.0
Q ss_pred chhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 102 REKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 102 r~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
+...++.+.+++..... .....+.|+|++|+|||+||.++++.
T Consensus 133 ~~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34455555566654321 12457889999999999999999874
No 244
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.60 E-value=0.0048 Score=65.05 Aligned_cols=50 Identities=26% Similarity=0.286 Sum_probs=34.9
Q ss_pred ccccchhHHHHHHHHHhc----CC--------------------CCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 98 EIFGREKEKSELVNRLLC----ES--------------------SKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~----~~--------------------~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.++|.++.++.|...+.. .. .........+.++|++|+|||++|+.+++.
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 478888888888776620 00 000112346889999999999999999874
No 245
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.58 E-value=0.0006 Score=63.89 Aligned_cols=81 Identities=14% Similarity=-0.005 Sum_probs=59.8
Q ss_pred cCceeeeeccCCC-c-------ccccccccCCcccEEeecCCccccc-----cchhhcCCCCCcEEEccCCcccc----c
Q 035555 443 LIKCRRWRCDNYI-K-------EIPTNIEKLIHLKYLNLSSQKKIKR-----LPETLCELYNLECLAISFCTNLR----Q 505 (767)
Q Consensus 443 ~~~~L~~l~l~~~-~-------~lp~~~~~l~~L~~L~L~~~~~~~~-----lp~~~~~l~~L~~L~L~~~~~l~----~ 505 (767)
..+.|+.|+++.. . .+...+...++|++|+|++|. ++. +...+...++|++|+|++|..-. .
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 4466778887754 2 234556778899999999998 553 45667778899999999998322 2
Q ss_pred cCcccccCcCCcEeeC--CCC
Q 035555 506 LPQGIGKLRKLMYLDN--DYT 524 (767)
Q Consensus 506 lp~~~~~l~~L~~L~l--~~~ 524 (767)
+...+...++|++|++ ++|
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N 133 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQ 133 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSS
T ss_pred HHHHHHhCCCceEEEecCCCC
Confidence 4556777889999999 666
No 246
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.42 E-value=0.024 Score=52.02 Aligned_cols=20 Identities=40% Similarity=0.622 Sum_probs=18.8
Q ss_pred EEEEEEccCCChHHHHHHHH
Q 035555 125 CVISLVGMGGIGKTTLAQFA 144 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v 144 (767)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37999999999999999999
No 247
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.40 E-value=0.01 Score=54.58 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=19.7
Q ss_pred CCEEEEEEccCCChHHHHHHHHH
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAY 145 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~ 145 (767)
...+++|+|+.|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34699999999999999999644
No 248
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.38 E-value=0.0028 Score=74.58 Aligned_cols=130 Identities=12% Similarity=0.171 Sum_probs=69.3
Q ss_pred ccccchhHHHHHHHHHhcCCC---CCCCCCEEEEEEccCCChHHHHHHHHHcccch-hhhh---hhHHHHHH-HHHHHhh
Q 035555 98 EIFGREKEKSELVNRLLCESS---KEQKGPCVISLVGMGGIGKTTLAQFAYNNDDV-KKIL---RKEYGIAR-AIIEALT 169 (767)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~-~~~F---~~~~~i~~-~i~~~l~ 169 (767)
.++|.+..++.+...+..... +.+.....+.|+|+.|+|||++|+.+.+...- ...| ++. .+.. .....+-
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~-~~~~~~~~s~l~ 637 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT-EYMEKHAVSRLI 637 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTT-TCCSSGGGGGC-
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEech-hccchhHHHHHc
Confidence 579999999988887754321 01223468999999999999999999763100 1111 110 0000 0000000
Q ss_pred CCCC---CccchHHHHHHHHHhcCCCeEEEEEeCCCCcChhhHHHHHHhhhcCC-----------CCcEEEEEcCc
Q 035555 170 YSSS---NFVEFQSLMQHIQKHVAGKKLLLVLDDVWNEDFYKWEQFYNCLKTCL-----------HGSKILITTRK 231 (767)
Q Consensus 170 ~~~~---~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 231 (767)
+..+ .......+...++. ...-+|+||++..........+...+..+. .+..||+||..
T Consensus 638 g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~ 710 (854)
T 1qvr_A 638 GAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNL 710 (854)
T ss_dssp -------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCT
T ss_pred CCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCc
Confidence 0000 00011122222222 234589999997776667777777776541 24447777764
No 249
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.06 E-value=0.0068 Score=57.44 Aligned_cols=43 Identities=26% Similarity=0.283 Sum_probs=34.1
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHc
Q 035555 101 GREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 101 Gr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.|++.++.|.+.+.... .....+|+|.|..|+||||+++.+..
T Consensus 2 ~~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CHHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35677888888887542 23567999999999999999998875
No 250
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.87 E-value=0.0058 Score=61.42 Aligned_cols=72 Identities=19% Similarity=0.268 Sum_probs=41.4
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCC
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVW 202 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 202 (767)
..+++.|+|++|+|||+||.++......+..|-... .-+.+. ....+.+...+.+.+.+...+ ++|+|++.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~-----~eE~v~---~~~~~le~~l~~i~~~l~~~~-LLVIDsI~ 192 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVR-----FGEPLS---GYNTDFNVFVDDIARAMLQHR-VIVIDSLK 192 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEE-----BSCSST---TCBCCHHHHHHHHHHHHHHCS-EEEEECCT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEec-----chhhhh---hhhcCHHHHHHHHHHHHhhCC-EEEEeccc
Confidence 346788999999999999999876311111111100 000000 001345556666666665555 99999995
Q ss_pred C
Q 035555 203 N 203 (767)
Q Consensus 203 ~ 203 (767)
.
T Consensus 193 a 193 (331)
T 2vhj_A 193 N 193 (331)
T ss_dssp T
T ss_pred c
Confidence 3
No 251
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.84 E-value=0.023 Score=65.03 Aligned_cols=159 Identities=15% Similarity=0.047 Sum_probs=78.7
Q ss_pred CCCccccchhHHHHHHHHHhcCCC-------CCCCCCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHH
Q 035555 95 DESEIFGREKEKSELVNRLLCESS-------KEQKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEA 167 (767)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~ 167 (767)
.-.++.|-++.+++|.+.+.-... .+-...+-|.++|++|.|||.+|+++++.. ...|-.+ -..+++..
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~--~~~f~~v--~~~~l~s~ 550 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QANFISI--KGPELLTM 550 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT--TCEEEEC--CHHHHHTT
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh--CCceEEe--ccchhhcc
Confidence 344678888888888776643211 012244568899999999999999999853 2222210 00011111
Q ss_pred hhCCCCCccchHHHHHHHHHhcCCCeEEEEEeCCCCc---------C-----hhhHHHHHHhhhcCC--CCcEEEEEcCc
Q 035555 168 LTYSSSNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE---------D-----FYKWEQFYNCLKTCL--HGSKILITTRK 231 (767)
Q Consensus 168 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------~-----~~~~~~l~~~l~~~~--~gs~ilvTtR~ 231 (767)
........+.......-+..+++|++|+++.- + .....+++..+.... .+--||-||..
T Consensus 551 -----~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~ 625 (806)
T 3cf2_A 551 -----WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNR 625 (806)
T ss_dssp -----TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CC
T ss_pred -----ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCC
Confidence 11112223333333343567899999998421 0 011233444444322 22223334443
Q ss_pred hh-H--Hhhh--cCcceEecCCCChhHHHHHHHHhc
Q 035555 232 ET-V--ARIM--GSADIISVNVLSETECWLVFESLG 262 (767)
Q Consensus 232 ~~-v--~~~~--~~~~~~~l~~L~~~~~~~l~~~~~ 262 (767)
.. + |-.. .-...+.++.-+.++-.++|..+.
T Consensus 626 p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 626 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred chhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 22 2 1111 124567777667777777776654
No 252
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.83 E-value=0.12 Score=53.43 Aligned_cols=157 Identities=7% Similarity=-0.044 Sum_probs=99.2
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHH-hcCCCeEEEEEeCC
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQK-HVAGKKLLLVLDDV 201 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv 201 (767)
-.++..++|+.|.||++.|..+.+... ...|+.. ..+. .....+..++.+.+.. -+-+++-++|+|++
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~--------~~~~--~~~~~~~~~l~~~~~~~plf~~~kvvii~~~ 85 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEH--------HTFS--IDPNTDWNAIFSLCQAMSLFASRQTLLLLLP 85 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEE--------EEEE--CCTTCCHHHHHHHHHHHHHCCSCEEEEEECC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCee--------EEEE--ecCCCCHHHHHHHhcCcCCccCCeEEEEECC
Confidence 346899999999999999988876311 1111100 0000 0112455555554443 23467788999999
Q ss_pred CC-cChhhHHHHHHhhhcCCCCcEEEEEcCc-------hhHHhh-hcCcceEecCCCChhHHHHHHHHhcCCCCCCcchh
Q 035555 202 WN-EDFYKWEQFYNCLKTCLHGSKILITTRK-------ETVARI-MGSADIISVNVLSETECWLVFESLGFSGKSMEERE 272 (767)
Q Consensus 202 ~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~-------~~v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~ 272 (767)
.. .....++.+...+....+++.+|++|.. ..+... ......++..+++.++....+.+.+-..+....
T Consensus 86 ~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~~i~-- 163 (343)
T 1jr3_D 86 ENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELD-- 163 (343)
T ss_dssp SSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTTCEEC--
T ss_pred CCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcCCCCC--
Confidence 76 5556788888888766667777776643 223333 344678899999999998888776532221111
Q ss_pred hHHHHHHHHHhhcCCCcchHHH
Q 035555 273 NLEKIGREIIRKCKGLPLVAKT 294 (767)
Q Consensus 273 ~~~~~~~~i~~~~~g~PLai~~ 294 (767)
.+.+..+++.++|...++..
T Consensus 164 --~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 164 --DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp --HHHHHHHHHSSTTCHHHHHH
T ss_pred --HHHHHHHHHHhchHHHHHHH
Confidence 24477899999998877754
No 253
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.82 E-value=0.0072 Score=57.66 Aligned_cols=39 Identities=28% Similarity=0.305 Sum_probs=29.4
Q ss_pred hHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHc
Q 035555 104 KEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 104 ~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
+.+++|.+.+... .....+|+|+|+.|+|||||++.+..
T Consensus 6 ~~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 6 ALCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4556666666543 12567999999999999999998866
No 254
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.77 E-value=0.039 Score=52.84 Aligned_cols=24 Identities=29% Similarity=0.119 Sum_probs=21.1
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.-.++.|+|.+|+||||||..+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345999999999999999998865
No 255
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.44 E-value=0.13 Score=50.30 Aligned_cols=38 Identities=21% Similarity=0.130 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 106 KSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 106 ~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..-+..++.... +....|.++|++|+|||.+|.++++.
T Consensus 90 ~~~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 90 ASVFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 334555554321 23457999999999999999999873
No 256
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.36 E-value=0.012 Score=61.54 Aligned_cols=50 Identities=28% Similarity=0.323 Sum_probs=36.2
Q ss_pred ccccchhHHHHHHHHHhcC--------C-CCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 98 EIFGREKEKSELVNRLLCE--------S-SKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~--------~-~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.++|.+..++.+...+... . .......+.|.++|++|+|||++|+++++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999888877310 0 001113457899999999999999999874
No 257
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.20 E-value=0.02 Score=57.60 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=29.5
Q ss_pred hHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHc
Q 035555 104 KEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 104 ~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
+.+++++..+..... ......+|.|.|++|+||||+|+.+..
T Consensus 14 ~~~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 14 NRLNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344555555544322 233567999999999999999999975
No 258
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.18 E-value=0.02 Score=57.46 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.1
Q ss_pred CCCEEEEEEccCCChHHHHHHHHHc
Q 035555 122 KGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 122 ~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
....+|+|+|..|+||||||+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999988765
No 259
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.14 E-value=0.01 Score=54.87 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.+|.|.|++|+||||+|+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999874
No 260
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.07 E-value=0.013 Score=54.79 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=22.4
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...+++|+|+.|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999875
No 261
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.03 E-value=0.024 Score=57.85 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=33.1
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHc
Q 035555 100 FGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 100 vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
|+-++..+++++.+...-. .+....|.|+|+.|+||||+|+.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 4556667777777653321 22456799999999999999999987
No 262
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.97 E-value=0.024 Score=57.53 Aligned_cols=46 Identities=17% Similarity=0.279 Sum_probs=33.1
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHc
Q 035555 99 IFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 99 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
++|....+..+...+..... .....+|+|.|..|+||||+|+.+..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~--~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPE--PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCC--CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccCC--CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34555556666665555432 34678999999999999999988854
No 263
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.94 E-value=0.023 Score=56.03 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 103 EKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 103 ~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
+...+++...+..... ......+|.|+|++|+||||+|+.+...
T Consensus 12 ~~~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 12 KHALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3344555555554432 2345689999999999999999998763
No 264
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.94 E-value=0.012 Score=54.09 Aligned_cols=23 Identities=26% Similarity=0.119 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.+|.|.|++|+||||+|+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998763
No 265
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.88 E-value=0.013 Score=55.38 Aligned_cols=23 Identities=39% Similarity=0.346 Sum_probs=20.9
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
..+|.|+|++|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 266
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.85 E-value=0.014 Score=53.89 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999987
No 267
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.79 E-value=0.017 Score=55.26 Aligned_cols=106 Identities=14% Similarity=0.025 Sum_probs=58.3
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcccchhh--------hhhhHHHHHHHHHHHhhCCCC--CccchHHHHHHHHHhcCCC
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNNDDVKK--------ILRKEYGIARAIIEALTYSSS--NFVEFQSLMQHIQKHVAGK 192 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~--------~F~~~~~i~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~k 192 (767)
.-.++.|+|..|+||||++..+..+..... .++.. -...++..++.... ......++.+.+.+.+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r--~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~ 88 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR--SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFND 88 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG--GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch--HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCC
Confidence 446999999999999999977765321110 11110 11122222221111 1123345666666655554
Q ss_pred eE-EEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCchh
Q 035555 193 KL-LLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKET 233 (767)
Q Consensus 193 ~~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 233 (767)
++ ++|+|.+..-+....+.+.. +.. .|..||+|-++.+
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDKN 127 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSBC
T ss_pred CCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEecccc
Confidence 44 99999996443334344433 333 2678999998543
No 268
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.78 E-value=0.015 Score=53.85 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=20.8
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999875
No 269
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.76 E-value=0.018 Score=54.48 Aligned_cols=25 Identities=40% Similarity=0.543 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...+|+|+|++|+||||+|+.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999874
No 270
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.71 E-value=0.014 Score=60.72 Aligned_cols=46 Identities=24% Similarity=0.164 Sum_probs=33.9
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 96 ESEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
-.+++|.+..++.+...+.... ..-|.|+|++|+|||++|+.+++.
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred chhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 3468999987766555444321 123889999999999999999873
No 271
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.68 E-value=0.051 Score=51.40 Aligned_cols=73 Identities=16% Similarity=0.213 Sum_probs=41.1
Q ss_pred EEEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHH-----------HHhhCCCCCccchHHHHHHHHHhcCCCeE
Q 035555 126 VISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAII-----------EALTYSSSNFVEFQSLMQHIQKHVAGKKL 194 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~-----------~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 194 (767)
+|.|.|++|+||+|.|+.+.....+. |.+ .-++++..+ ..+. .......+-+...+.+.+.....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~-~is-tGdllR~~i~~~t~lg~~~~~~~~--~G~lvpd~iv~~lv~~~l~~~~~ 77 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFV-HIS-TGDILREAVQKGTPLGKKAKEYME--RGELVPDDLIIALIEEVFPKHGN 77 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCE-EEE-HHHHHHHHHHHTCHHHHHHHHHHH--HTCCCCHHHHHHHHHHHCCSSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCe-EEc-HHHHHHHHHHhcChhhhhHHHHHh--cCCcCCHHHHHHHHHHhhccCCc
Confidence 57899999999999999998753221 111 112222111 1111 11223334556667777765444
Q ss_pred EEEEeCCCC
Q 035555 195 LLVLDDVWN 203 (767)
Q Consensus 195 LlVlDdv~~ 203 (767)
+|||..-.
T Consensus 78 -~ilDGfPR 85 (206)
T 3sr0_A 78 -VIFDGFPR 85 (206)
T ss_dssp -EEEESCCC
T ss_pred -eEecCCch
Confidence 68899843
No 272
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.65 E-value=0.11 Score=50.85 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=19.9
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+++|+|+.|.|||||.+.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999854
No 273
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.61 E-value=0.013 Score=53.89 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=20.7
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.+|+|+|+.|+||||+++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999873
No 274
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.57 E-value=0.017 Score=53.81 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.1
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.+.|.|+|++|+||||+|+.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999763
No 275
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.56 E-value=0.023 Score=52.31 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.4
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+|+|+|+.|+||||+|+.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999875
No 276
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.39 E-value=0.023 Score=53.20 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=21.9
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...+|.|.|++|+||||+|+.+...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998763
No 277
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.39 E-value=0.22 Score=51.31 Aligned_cols=60 Identities=22% Similarity=0.162 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhcCCCeEEEEEeCCCCc-ChhhHHHHHHhhhcC--CCCcEEEEEcCchhHHhh
Q 035555 178 FQSLMQHIQKHVAGKKLLLVLDDVWNE-DFYKWEQFYNCLKTC--LHGSKILITTRKETVARI 237 (767)
Q Consensus 178 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~ 237 (767)
.+.-.-.|.+.|-.++-+|++|.--.. |...-..+...+..- ..|..||++|-+-+++..
T Consensus 167 GqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 167 GQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKR 229 (366)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 333344567778888889999987432 333333444444322 235667777777555443
No 278
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.37 E-value=0.02 Score=54.06 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.3
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+|+|+|+.|+||||||+.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999875
No 279
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.36 E-value=0.021 Score=54.28 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=21.9
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...+|+|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999999764
No 280
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.28 E-value=0.027 Score=53.49 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.4
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...+|+|+|++|+||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999874
No 281
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.27 E-value=0.025 Score=53.85 Aligned_cols=24 Identities=46% Similarity=0.495 Sum_probs=21.6
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999999876
No 282
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.24 E-value=0.02 Score=53.01 Aligned_cols=24 Identities=38% Similarity=0.384 Sum_probs=21.1
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.++|.|+|++|+||||+|+.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457899999999999999999863
No 283
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.24 E-value=0.017 Score=54.66 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=21.1
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..+|+|.|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998763
No 284
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.23 E-value=0.025 Score=53.58 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=20.3
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999875
No 285
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.20 E-value=0.02 Score=54.28 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=21.7
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..++|.|+|++|+||||+++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4468999999999999999998763
No 286
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.20 E-value=0.023 Score=53.10 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.7
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.+|.|.|++|+||||+|+.+.+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999873
No 287
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.18 E-value=0.022 Score=51.97 Aligned_cols=25 Identities=32% Similarity=0.264 Sum_probs=21.2
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999773
No 288
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.16 E-value=0.02 Score=53.32 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=20.1
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999875
No 289
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.14 E-value=0.025 Score=53.60 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.2
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..+|+|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999998763
No 290
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.13 E-value=0.026 Score=52.47 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=21.9
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
....|+|+|+.|+||||+|+.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3458999999999999999999873
No 291
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.13 E-value=0.028 Score=53.08 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.8
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...+|+|+|+.|+||||+|+.+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 5679999999999999999999874
No 292
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.12 E-value=0.027 Score=52.56 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=20.3
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4799999999999999999975
No 293
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.11 E-value=0.028 Score=57.12 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=20.1
Q ss_pred CCEEEEEEccCCChHHHHHHHHH
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAY 145 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~ 145 (767)
+.+||+|.|-|||||||.|..+.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA 69 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLS 69 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHH
Confidence 67899999999999999986553
No 294
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.08 E-value=0.041 Score=53.76 Aligned_cols=25 Identities=20% Similarity=0.116 Sum_probs=22.0
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...+|+|.|++|+||||+|+.+.+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999763
No 295
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.03 E-value=0.026 Score=55.51 Aligned_cols=23 Identities=22% Similarity=0.127 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.+|.|.|+.|+||||||+.++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999998764
No 296
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.02 E-value=0.025 Score=52.79 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=20.8
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.+|.|.|++|+||||+|+.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999873
No 297
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.97 E-value=0.033 Score=52.64 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...+|+|.|+.|+||||+|+.+.+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999998763
No 298
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.94 E-value=0.03 Score=52.45 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.1
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..+|+|.|++|+||||+|+.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988763
No 299
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.94 E-value=0.18 Score=46.61 Aligned_cols=52 Identities=25% Similarity=0.335 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCCeE-EEEEeCCCC---cChhhHHHHHHhhhcCCCCcEEEEEcCch
Q 035555 181 LMQHIQKHVAGKKL-LLVLDDVWN---EDFYKWEQFYNCLKTCLHGSKILITTRKE 232 (767)
Q Consensus 181 ~~~~l~~~l~~k~~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 232 (767)
....+++.+.+.+| |+|||++-. -.....+.+...+........||+|+|..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 34445566655555 999999821 12244566777777666778899999984
No 300
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.89 E-value=0.037 Score=51.45 Aligned_cols=25 Identities=36% Similarity=0.383 Sum_probs=22.3
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...+|.|.|++|+||||+|+.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999774
No 301
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.89 E-value=0.032 Score=52.92 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 302
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.89 E-value=0.03 Score=52.53 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.2
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..+|+|.|+.|+||||+|+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998763
No 303
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.86 E-value=0.031 Score=51.57 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.++|+|+.|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988763
No 304
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.85 E-value=0.024 Score=52.19 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.|.|.|++|+||||+|+.+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999773
No 305
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.84 E-value=0.028 Score=53.20 Aligned_cols=21 Identities=43% Similarity=0.491 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHHc
Q 035555 126 VISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~ 146 (767)
+|+|+|+.|+||||+|+.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 799999999999999999876
No 306
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.81 E-value=0.029 Score=54.15 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999976
No 307
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.79 E-value=0.15 Score=54.09 Aligned_cols=25 Identities=36% Similarity=0.491 Sum_probs=22.5
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...+|.|+|++|+||||+|+.+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999999874
No 308
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.78 E-value=0.025 Score=52.47 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.0
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
|.|.|+|++|+|||||++.+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45889999999999999998753
No 309
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.77 E-value=0.026 Score=53.26 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.2
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999876
No 310
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.76 E-value=0.023 Score=52.83 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
+|.|.|++|+||||+|+.+...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999773
No 311
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.76 E-value=0.032 Score=52.10 Aligned_cols=24 Identities=21% Similarity=0.540 Sum_probs=21.4
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
..++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 456899999999999999999875
No 312
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.75 E-value=0.03 Score=52.92 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHHc
Q 035555 126 VISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999876
No 313
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.71 E-value=0.035 Score=54.87 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.4
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998763
No 314
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.71 E-value=0.033 Score=50.55 Aligned_cols=24 Identities=33% Similarity=0.236 Sum_probs=21.0
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
..++++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999988876
No 315
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.70 E-value=0.2 Score=51.68 Aligned_cols=106 Identities=8% Similarity=0.088 Sum_probs=58.0
Q ss_pred EEEEEEccCCChHHHHHHHHHcccchh--hh-hhh--HHHHH-HHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEEEE
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNNDDVK--KI-LRK--EYGIA-RAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLLVL 198 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~~~~~--~~-F~~--~~~i~-~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVl 198 (767)
.+|+|+|+.|+|||||.+.+.....-. .. +.. ..+.. ......+.. .....+.......|...|...+=+|++
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q-~~~~~~~~~~~~~La~aL~~~Pdvill 202 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQ-REVHRDTLGFSEALRSALREDPDIILV 202 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEE-EEBTTTBSCHHHHHHHHTTSCCSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceee-eeeccccCCHHHHHHHHhhhCcCEEec
Confidence 499999999999999999886521100 00 000 00000 000000000 000011123455788889999999999
Q ss_pred eCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCchhHHh
Q 035555 199 DDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKETVAR 236 (767)
Q Consensus 199 Ddv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 236 (767)
|...+ .+.+..+..... .|.-||+||-..+.+.
T Consensus 203 DEp~d--~e~~~~~~~~~~---~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 203 GEMRD--LETIRLALTAAE---TGHLVFGTLHTTSAAK 235 (356)
T ss_dssp SCCCS--HHHHHHHHHHHH---TTCEEEEEESCSSHHH
T ss_pred CCCCC--HHHHHHHHHHHh---cCCEEEEEEccChHHH
Confidence 99963 455555444433 3566888887765543
No 316
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.70 E-value=0.036 Score=54.54 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.9
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999876
No 317
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.65 E-value=0.04 Score=55.96 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.7
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+|+|+|+.|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 567999999999999999998865
No 318
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.61 E-value=0.058 Score=51.86 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=22.0
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
....|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999888763
No 319
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.60 E-value=0.045 Score=51.13 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.9
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...+|+|.|+.|+||||+|+.+...
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998763
No 320
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.58 E-value=0.034 Score=52.33 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.+|+|.|++|+||||+|+.+...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999774
No 321
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.58 E-value=0.037 Score=51.44 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=20.3
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
..|+|.|+.|+||||+|+.+.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 322
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.57 E-value=0.035 Score=51.86 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.3
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...+|+|+|+.|+||||+|+.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 5679999999999999999998773
No 323
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.56 E-value=0.041 Score=50.78 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.4
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+|+|.|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999876
No 324
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.56 E-value=0.028 Score=51.52 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999773
No 325
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.54 E-value=0.04 Score=52.38 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.3
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999998763
No 326
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.52 E-value=0.045 Score=53.56 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.3
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+|+|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446999999999999999998865
No 327
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.50 E-value=0.042 Score=51.84 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=21.6
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...+|.|.|++|+||||+|+.+...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999998763
No 328
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.50 E-value=0.067 Score=51.48 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.9
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 329
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.49 E-value=0.037 Score=50.44 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=19.9
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999773
No 330
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.46 E-value=0.38 Score=49.38 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+++|+|+.|.|||||.+.++.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999853
No 331
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.42 E-value=0.041 Score=52.21 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.0
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35999999999999999999876
No 332
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.41 E-value=0.04 Score=53.93 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=20.9
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
..+|+|+|+.|+|||||++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 333
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.32 E-value=0.038 Score=56.73 Aligned_cols=23 Identities=26% Similarity=0.003 Sum_probs=20.6
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-..++|+|.+|+|||||++.+.+
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHH
Confidence 35899999999999999998876
No 334
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.32 E-value=0.036 Score=53.09 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.6
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
..+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 335
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.28 E-value=0.028 Score=52.04 Aligned_cols=24 Identities=29% Similarity=0.283 Sum_probs=17.2
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999998763
No 336
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.27 E-value=0.049 Score=51.83 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=23.2
Q ss_pred CCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 122 KGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 122 ~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...++|.|.|++|+||+|.|+.+.+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999875
No 337
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.26 E-value=0.25 Score=51.23 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.1
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+++|+|+.|.|||||.+.+..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHc
Confidence 4899999999999999999854
No 338
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.23 E-value=0.042 Score=51.40 Aligned_cols=21 Identities=43% Similarity=0.672 Sum_probs=19.6
Q ss_pred EEEEEccCCChHHHHHHHHHc
Q 035555 126 VISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~ 146 (767)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999977
No 339
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.22 E-value=0.046 Score=52.29 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=21.0
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+++|+|+.|+|||||.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 345999999999999999998865
No 340
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.20 E-value=0.047 Score=53.63 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=21.1
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999985
No 341
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.15 E-value=0.068 Score=49.79 Aligned_cols=38 Identities=13% Similarity=0.016 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 105 EKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 105 ~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
-+..+..++..- +....+.|+|++|+||||+|.++++.
T Consensus 44 f~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 44 FLGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 355666665431 12346899999999999999888873
No 342
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.14 E-value=0.06 Score=48.46 Aligned_cols=24 Identities=33% Similarity=0.326 Sum_probs=21.5
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.-.+++|+|+.|.|||||++.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999987
No 343
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.13 E-value=0.046 Score=52.46 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=21.1
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...|.|.|++|+||||+|+.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998764
No 344
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.13 E-value=0.051 Score=54.89 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.4
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+|+|+|++|+||||+++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999998865
No 345
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.12 E-value=0.22 Score=51.30 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=21.8
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...++.|+|.+|+||||||.+++..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5579999999999999999887653
No 346
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.11 E-value=0.068 Score=51.18 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=29.7
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 101 GREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 101 Gr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
+.++..+.+...+... ..++|+|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~------~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRES------GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHHH------TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhccc------CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3345555555555322 5679999999999999999888763
No 347
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.11 E-value=0.048 Score=52.00 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.9
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
..+|+|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 348
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.09 E-value=0.15 Score=54.20 Aligned_cols=23 Identities=43% Similarity=0.515 Sum_probs=20.0
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..++|+|.+|+||||||..+..+
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhh
Confidence 36899999999999999988763
No 349
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.08 E-value=0.047 Score=51.94 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.3
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..+|+|.|+.|+||||+|+.+.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998763
No 350
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.05 E-value=0.078 Score=49.41 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=21.9
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999998875
No 351
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.04 E-value=0.096 Score=55.48 Aligned_cols=51 Identities=24% Similarity=0.326 Sum_probs=36.0
Q ss_pred CccccchhHHHHHHHHHhcC--------CCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 97 SEIFGREKEKSELVNRLLCE--------SSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..++|.++.++.+...+... ........+-|.++|++|+||||+|+.++..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 35889988888887766331 0000113456889999999999999998763
No 352
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.04 E-value=0.058 Score=53.96 Aligned_cols=24 Identities=42% Similarity=0.635 Sum_probs=21.5
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999873
No 353
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.04 E-value=0.034 Score=50.81 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998876
No 354
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.02 E-value=0.11 Score=52.68 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.7
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+|+|+|+.|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998876
No 355
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.01 E-value=0.072 Score=59.78 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=36.5
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..++|.+..++.+...+... ..+.|+|++|+||||||+.+...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46899999998888887643 37999999999999999999763
No 356
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.96 E-value=0.53 Score=48.70 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.4
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|+|+.|.|||||.+.++.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 35899999999999999999863
No 357
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.89 E-value=0.11 Score=54.04 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHc
Q 035555 106 KSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 106 ~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
..++.+.+.... ....+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHH
Confidence 445555554332 2678999999999999999988754
No 358
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.87 E-value=1 Score=47.49 Aligned_cols=24 Identities=46% Similarity=0.477 Sum_probs=21.5
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
..++|.++|.+|+||||++..++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988764
No 359
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.86 E-value=0.051 Score=51.93 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.4
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998663
No 360
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.85 E-value=0.1 Score=53.20 Aligned_cols=25 Identities=44% Similarity=0.555 Sum_probs=22.1
Q ss_pred CCCEEEEEEccCCChHHHHHHHHHc
Q 035555 122 KGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 122 ~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
....+++|+|+.|+||||+++.+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999988865
No 361
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.79 E-value=0.051 Score=52.42 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.2
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...|.|.|++|+||||+|+.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999763
No 362
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.77 E-value=0.054 Score=50.79 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.9
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998774
No 363
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.73 E-value=0.033 Score=53.17 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHHc
Q 035555 126 VISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~ 146 (767)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999876
No 364
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.73 E-value=0.14 Score=52.09 Aligned_cols=43 Identities=23% Similarity=0.222 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhcCC-----CC---CCCCCEEEEEEccCCChHHHHHHHHHc
Q 035555 104 KEKSELVNRLLCES-----SK---EQKGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 104 ~~~~~l~~~L~~~~-----~~---~~~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+.|.+.+.... .+ ......+|+|+|.+|+||||++..++.
T Consensus 77 ~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 77 ALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp HHHHHHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34455666664432 11 124568999999999999999988865
No 365
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.72 E-value=0.51 Score=48.67 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.4
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|+|+.|.|||||.+.++.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 35899999999999999999853
No 366
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.68 E-value=0.055 Score=51.66 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.4
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998763
No 367
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.68 E-value=0.066 Score=50.93 Aligned_cols=25 Identities=32% Similarity=0.293 Sum_probs=21.8
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...+|.|.|+.|+||||+|+.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998763
No 368
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=92.67 E-value=0.23 Score=51.67 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=32.8
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..++|....+.++.+.+..-.. ....|.|+|.+|+||+++|+.+...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~----~~~~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK----SKAPVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT----SCSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc----cchhheEEeCCCchHHHHHHHHHHh
Confidence 3578887776666655533221 1224779999999999999999764
No 369
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.64 E-value=0.13 Score=51.90 Aligned_cols=44 Identities=30% Similarity=0.363 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHhcCCC-C-CCCCCEEEEEEccCCChHHHHHHHHHc
Q 035555 103 EKEKSELVNRLLCESS-K-EQKGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 103 ~~~~~~l~~~L~~~~~-~-~~~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
+...+.|.+.+..... + ......+|+|+|++|+||||++..++.
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHH
Confidence 4455666666643221 0 123568999999999999999988865
No 370
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.60 E-value=0.07 Score=51.03 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.8
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
No 371
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.57 E-value=0.062 Score=50.73 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.+|+|.|+.|+||||+|+.+.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 372
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.50 E-value=0.055 Score=52.00 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.1
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...|.|.|++|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999764
No 373
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.46 E-value=0.069 Score=53.74 Aligned_cols=24 Identities=33% Similarity=0.241 Sum_probs=21.1
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+|+|+|.+|+||||++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988764
No 374
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.42 E-value=0.069 Score=51.48 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.5
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.-.+++|+|+.|+|||||++.+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999999875
No 375
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.38 E-value=0.055 Score=52.88 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999977
No 376
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.27 E-value=0.07 Score=54.31 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.+|+|.|+.|+||||||..++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999998774
No 377
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.27 E-value=0.067 Score=50.61 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHHc
Q 035555 126 VISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~ 146 (767)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999977
No 378
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.27 E-value=0.08 Score=53.39 Aligned_cols=24 Identities=42% Similarity=0.486 Sum_probs=21.7
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+++|+|+.|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999998876
No 379
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.25 E-value=0.062 Score=50.02 Aligned_cols=22 Identities=41% Similarity=0.451 Sum_probs=19.9
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
+++|+|+.|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999988763
No 380
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.23 E-value=0.058 Score=51.60 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..|.|.|++|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 381
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.23 E-value=0.16 Score=52.38 Aligned_cols=24 Identities=42% Similarity=0.486 Sum_probs=21.8
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+++|+|+.|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 467999999999999999998876
No 382
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.22 E-value=0.051 Score=52.56 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=16.4
Q ss_pred CEEEEEEccCCChHHHHHHHHH
Q 035555 124 PCVISLVGMGGIGKTTLAQFAY 145 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~ 145 (767)
..+++|+|+.|+|||||++.+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999998
No 383
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.21 E-value=0.071 Score=52.18 Aligned_cols=24 Identities=33% Similarity=0.308 Sum_probs=21.0
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.-.+++|+|+.|+|||||++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 345999999999999999998874
No 384
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.16 E-value=0.074 Score=48.68 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.4
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
..++++|+|..|+|||||+..+..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHH
Confidence 356899999999999999988876
No 385
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.13 E-value=0.075 Score=51.60 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=20.7
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+++|+|+.|+|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6999999999999999999976
No 386
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.12 E-value=0.16 Score=54.29 Aligned_cols=24 Identities=42% Similarity=0.589 Sum_probs=21.6
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+++|+|..|+|||||++.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 467999999999999999988865
No 387
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.05 E-value=0.079 Score=51.30 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.9
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 34899999999999999999976
No 388
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.01 E-value=0.19 Score=43.37 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=17.1
Q ss_pred CCcEEEccCCccccccCcc-cccCcCCcEeeCCCC
Q 035555 491 NLECLAISFCTNLRQLPQG-IGKLRKLMYLDNDYT 524 (767)
Q Consensus 491 ~L~~L~L~~~~~l~~lp~~-~~~l~~L~~L~l~~~ 524 (767)
+|++|+|++|. +..+|.. |..+++|+.|+|.+|
T Consensus 32 ~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNN-LTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCc-CCccChhhhhhccccCEEEecCC
Confidence 45555555555 4444442 344555555555554
No 389
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.97 E-value=0.18 Score=53.34 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=21.1
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999977754
No 390
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.96 E-value=0.074 Score=51.09 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999986
No 391
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.94 E-value=0.18 Score=53.60 Aligned_cols=44 Identities=27% Similarity=0.338 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHhcCCCC---CCCCCEEEEEEccCCChHHHHHHHHHc
Q 035555 103 EKEKSELVNRLLCESSK---EQKGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 103 ~~~~~~l~~~L~~~~~~---~~~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
+...+++.+.|...... .....++|.++|.+|+||||+|..++.
T Consensus 76 ~~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 76 KIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34456677766543210 123578999999999999999977764
No 392
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.86 E-value=0.46 Score=52.89 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=20.4
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|+|+.|.|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999854
No 393
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.79 E-value=0.11 Score=52.70 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..++|.|+|+.|+||||||..++..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999874
No 394
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.74 E-value=0.09 Score=50.98 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.6
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|+|+.|+|||||++.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34899999999999999999865
No 395
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.73 E-value=0.084 Score=50.34 Aligned_cols=22 Identities=41% Similarity=0.434 Sum_probs=19.6
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999763
No 396
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.69 E-value=0.1 Score=50.64 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=21.2
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.-.++.|+|++|+||||||..+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 345999999999999999998876
No 397
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.69 E-value=0.051 Score=54.59 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=18.4
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+|+|.|..|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998876
No 398
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=91.69 E-value=3 Score=54.27 Aligned_cols=224 Identities=15% Similarity=0.125 Sum_probs=0.0
Q ss_pred EEEEccCCChHHHHHHHHHcccchhhhhhhHHHHHHHHHHHhhCCCCCccchHHHHHHHHHhc---------------CC
Q 035555 127 ISLVGMGGIGKTTLAQFAYNNDDVKKILRKEYGIARAIIEALTYSSSNFVEFQSLMQHIQKHV---------------AG 191 (767)
Q Consensus 127 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l---------------~~ 191 (767)
|.++|++|+|||++|+.+.....-...+.. +.........+++.+...+ .+
T Consensus 1270 vLL~GPpGtGKT~la~~~l~~~~~~~~~~i--------------nfsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~g 1335 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALRNSSLYDVVGI--------------NFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDI 1335 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCSSCEEEEE--------------ECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSS
T ss_pred EEEECCCCCCHHHHHHHHHhcCCCCceEEE--------------EeecCCCHHHHHHHHHHHhhhccccCCccccCCCCC
Q ss_pred CeEEEEEeCCCCcChh------hHHHHHHhhhcCC------------CCcEEEEEcCchh-------HHhhhcCcceEec
Q 035555 192 KKLLLVLDDVWNEDFY------KWEQFYNCLKTCL------------HGSKILITTRKET-------VARIMGSADIISV 246 (767)
Q Consensus 192 k~~LlVlDdv~~~~~~------~~~~l~~~l~~~~------------~gs~ilvTtR~~~-------v~~~~~~~~~~~l 246 (767)
++.++++||+.-...+ ..+.++..+..++ .+..+|-++.... -.........+.+
T Consensus 1336 k~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i 1415 (2695)
T 4akg_A 1336 KNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYL 1415 (2695)
T ss_dssp SCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEEC
T ss_pred ceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEe
Q ss_pred CCCChhHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhhcCCCcchHHHHHhHHhcCCCHHHHHHHHhhhcccchhhhhhh
Q 035555 247 NVLSETECWLVFESLGFSGKSMEERENLEKIGREIIRKCKGLPLVAKTIASLLRSKNTEKEWQNILESEIWEIEEVEKNL 326 (767)
Q Consensus 247 ~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~i 326 (767)
+..+.++-..+|... .....+....++-....+.... .+-|..+... .
T Consensus 1416 ~~P~~~~l~~I~~~i----------------l~~~l~~~~~v~~~~~~lv~at-----i~~y~~v~~~-----------~ 1463 (2695)
T 4akg_A 1416 GYPSGKSLSQIYEIY----------------YKAIFKLVPEFRSYTEPFARAS-----VHLYNECKAR-----------Y 1463 (2695)
T ss_dssp CCCTTTHHHHHHHHH----------------HHHHTTSSGGGGGGHHHHHHHH-----HHHHHHHHHH-----------S
T ss_pred CCCCHHHHHHHHHHH----------------HHHHhccCHHHHHHHHHHHHHH-----HHHHHHHHHH-----------c
Q ss_pred hhhHHhhcccCCHHHHHHHHHhccC-CCCcccChHHHHHHHHHcC---CccCCCCCcHHHHHHHHHHHHHhcCC
Q 035555 327 LAPLLLSYNELPSKVKQCFTYCAIF-PKNSKIWKDKLIELWMAQG---FLNNKRSKEMEEIGEEYFNILASRSF 396 (767)
Q Consensus 327 ~~~l~~sy~~L~~~~k~~f~~~s~f-p~~~~i~~~~li~~w~a~g---~~~~~~~~~~~~~~~~~l~~L~~~sl 396 (767)
.+.-+.-|.-=+.++-+.|..+-.. ++...-+...++++|+-|+ |..+--.....+...+.+.+.+...|
T Consensus 1464 ~~~~k~HY~FnlRDLsrv~qGll~~~~~~~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~~~~f 1537 (2695)
T 4akg_A 1464 STGLQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYL 1537 (2695)
T ss_dssp CTTTCTTCCCCHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHHHS
T ss_pred CCccCCCcccCHHHHHHHHHHHHhcCchhhhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
No 399
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.65 E-value=0.071 Score=50.47 Aligned_cols=21 Identities=33% Similarity=0.303 Sum_probs=19.6
Q ss_pred EEEEEccCCChHHHHHHHHHc
Q 035555 126 VISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~ 146 (767)
+++|+|+.|+|||||++.+..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 899999999999999998864
No 400
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.64 E-value=0.087 Score=50.61 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998763
No 401
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=91.63 E-value=0.67 Score=48.56 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=32.7
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 98 EIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.++|....+.++.+.+..-.. ... .|.|.|..|+|||++|+.+...
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~---~~~-~vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC---AEC-PVLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT---CCS-CEEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcC---CCC-CeEEecCCCcCHHHHHHHHHHh
Confidence 466777677777666654322 123 3589999999999999999763
No 402
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.60 E-value=0.11 Score=51.09 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.5
Q ss_pred CCCEEEEEEccCCChHHHHHHHHH
Q 035555 122 KGPCVISLVGMGGIGKTTLAQFAY 145 (767)
Q Consensus 122 ~~~~~v~I~G~gGiGKTtLa~~v~ 145 (767)
....++.+.|.||+||||++..+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHH
Confidence 356899999999999999998886
No 403
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.59 E-value=0.093 Score=53.04 Aligned_cols=24 Identities=38% Similarity=0.391 Sum_probs=21.4
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..+|.|+|+.|+||||||+.+...
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 404
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.58 E-value=0.11 Score=52.08 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.4
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.++|.|.|+.|+||||||..++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 358999999999999999999874
No 405
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.53 E-value=0.088 Score=52.21 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=20.0
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+++|+|+.|+|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999999854
No 406
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.52 E-value=0.1 Score=50.57 Aligned_cols=24 Identities=33% Similarity=0.259 Sum_probs=21.2
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...|.|.|+.|+||||+|+.+.+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999774
No 407
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.51 E-value=0.12 Score=51.69 Aligned_cols=25 Identities=36% Similarity=0.236 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..++|.|.|+.|+||||||..++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 4578999999999999999999764
No 408
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.47 E-value=0.099 Score=51.57 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.9
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|+|+.|+|||||.+.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999976
No 409
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.44 E-value=0.11 Score=50.54 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.4
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.-.+++|+|+.|.|||||.+.+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346999999999999999999975
No 410
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.35 E-value=0.17 Score=52.56 Aligned_cols=24 Identities=29% Similarity=0.110 Sum_probs=21.7
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+++|+|+.|+|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 446999999999999999999986
No 411
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.29 E-value=0.096 Score=51.74 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=21.0
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|+|+.|.|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 34899999999999999999986
No 412
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.29 E-value=0.11 Score=51.29 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.9
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|+|+.|+|||||.+.+..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 35899999999999999999976
No 413
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.28 E-value=1.9 Score=41.31 Aligned_cols=32 Identities=28% Similarity=0.328 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHH
Q 035555 105 EKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFA 144 (767)
Q Consensus 105 ~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v 144 (767)
..++++..+... +.+.|.|..|+||||+...+
T Consensus 65 ~q~~~i~~i~~g--------~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 65 FESEILEAISQN--------SVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp GHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHHHhcC--------CEEEEEeCCCCCcHHhHHHH
Confidence 345555555432 37999999999999876544
No 414
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.27 E-value=0.12 Score=47.89 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.2
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.+.|.|.|+.|+||||||.++...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999999774
No 415
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.26 E-value=0.11 Score=52.62 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 416
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.25 E-value=0.12 Score=46.66 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.8
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999874
No 417
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.24 E-value=0.12 Score=49.97 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=22.7
Q ss_pred CCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 122 KGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 122 ~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
....+|+|.|+.|+||||+++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 35579999999999999999998773
No 418
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.21 E-value=0.18 Score=50.46 Aligned_cols=77 Identities=14% Similarity=0.253 Sum_probs=41.8
Q ss_pred EEEEEccCCChHHHHHHHHHcccchh-----h-hhhhHHHHHHHHHHHhhCCCCC-----ccchHHH-HHHHHHh---cC
Q 035555 126 VISLVGMGGIGKTTLAQFAYNNDDVK-----K-ILRKEYGIARAIIEALTYSSSN-----FVEFQSL-MQHIQKH---VA 190 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~~~~~-----~-~F~~~~~i~~~i~~~l~~~~~~-----~~~~~~~-~~~l~~~---l~ 190 (767)
++-|.|++|+||||||.++....... . .++....+....++.++....+ ..+.++. ...+... -.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 78999999999999998776532211 0 1111111111235555543221 1234444 3333222 24
Q ss_pred CCeEEEEEeCCC
Q 035555 191 GKKLLLVLDDVW 202 (767)
Q Consensus 191 ~k~~LlVlDdv~ 202 (767)
++.-++|+|-+.
T Consensus 110 ~~~~lvVIDSI~ 121 (333)
T 3io5_A 110 GEKVVVFIDSLG 121 (333)
T ss_dssp TCCEEEEEECST
T ss_pred cCceEEEEeccc
Confidence 567899999984
No 419
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.19 E-value=0.1 Score=50.73 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+++|+|+.|.|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999976
No 420
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.18 E-value=0.1 Score=48.58 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.1
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 357999999999999999998764
No 421
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.18 E-value=0.16 Score=54.95 Aligned_cols=47 Identities=15% Similarity=0.003 Sum_probs=33.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 97 SEIFGREKEKSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
+..+.|.+..+.+.+..... .....+|.+.|++|+||||+|+++...
T Consensus 372 P~~f~rpeV~~vLr~~~~~~----~~~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 372 PEWFSYPEVVKILRESNPPR----PKQGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp CTTTSCHHHHHHHHHHSCCG----GGCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred CccccChhhHHHHHHhcccc----cccceEEEecccCCCCHHHHHHHHHHH
Confidence 34566666666666544221 124478999999999999999999883
No 422
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.17 E-value=0.087 Score=50.10 Aligned_cols=22 Identities=41% Similarity=0.538 Sum_probs=20.3
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+++|+|+.|+|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999976
No 423
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.17 E-value=0.11 Score=50.87 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.7
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+++|+|+.|.|||||.+.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 424
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.15 E-value=0.1 Score=51.32 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+++|+|+.|+|||||.+.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999976
No 425
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.13 E-value=0.11 Score=50.20 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.7
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|+|++|+|||||++.+..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999875
No 426
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.11 E-value=0.11 Score=52.07 Aligned_cols=24 Identities=17% Similarity=0.283 Sum_probs=21.2
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.-.+++|+|+.|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 345899999999999999999876
No 427
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.10 E-value=0.12 Score=52.31 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=20.9
Q ss_pred CCCEEEEEEccCCChHHHHHHHHHc
Q 035555 122 KGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 122 ~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...++|+|+|-||+||||+|..++.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHH
Confidence 3678999999999999999977654
No 428
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.08 E-value=0.13 Score=46.00 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
+.|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 429
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.05 E-value=0.14 Score=50.48 Aligned_cols=107 Identities=11% Similarity=0.052 Sum_probs=52.8
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcccch--hhh--hhh--HHHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCCeEEE
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNNDDV--KKI--LRK--EYGIARAIIEALTYSSSNFVEFQSLMQHIQKHVAGKKLLL 196 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~~~~--~~~--F~~--~~~i~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~Ll 196 (767)
...+++|+|+.|+|||||++.+..-... ... +.. ...+.+.....+...... .+...+...+...+..++=++
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~g-l~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVG-EDTKSFADALRAALREDPDVI 102 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBT-TTBSCHHHHHHHHHHHCCSEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhC-CCHHHHHHHHHHHHhhCCCEE
Confidence 3469999999999999999888652110 000 000 000000000000000000 011223445666666667788
Q ss_pred EEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcCchhHH
Q 035555 197 VLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTRKETVA 235 (767)
Q Consensus 197 VlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 235 (767)
++|... +......+.... ..|.-|++||-+.++.
T Consensus 103 llDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 103 FVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp EESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred EeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 899985 333333333332 2366688888765543
No 430
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.05 E-value=0.12 Score=51.00 Aligned_cols=22 Identities=41% Similarity=0.687 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+++|+|+.|+|||||.+.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999976
No 431
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.03 E-value=0.1 Score=48.18 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=19.9
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.|+|+|.+|+|||||...+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999873
No 432
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.02 E-value=0.11 Score=50.11 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.3
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+++|+|+.|.|||||.+.+..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999965
No 433
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.97 E-value=0.12 Score=50.71 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.6
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|+|+.|+|||||.+.++.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34999999999999999999865
No 434
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.96 E-value=0.13 Score=50.94 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=21.1
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|+|+.|+|||||.+.++.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34899999999999999999987
No 435
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.95 E-value=0.27 Score=42.40 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=37.2
Q ss_pred CCc--ccccccccCCcccEEeecCCccccccch-hhcCCCCCcEEEccCCcc
Q 035555 454 YIK--EIPTNIEKLIHLKYLNLSSQKKIKRLPE-TLCELYNLECLAISFCTN 502 (767)
Q Consensus 454 ~~~--~lp~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~ 502 (767)
.++ .+|..+. ..|++|+|++|. ++.+|. .+..+++|++|+|++|..
T Consensus 19 ~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 19 GLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 455 7776543 479999999999 888875 467899999999999873
No 436
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.89 E-value=0.12 Score=51.19 Aligned_cols=23 Identities=43% Similarity=0.537 Sum_probs=20.8
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|+|+.|+|||||++.+..
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999965
No 437
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=90.84 E-value=0.55 Score=49.50 Aligned_cols=104 Identities=13% Similarity=-0.003 Sum_probs=54.1
Q ss_pred CCCCEEEEEEccCCChHHHHHHHHHcccchhhhh-hhHHHHHHHHHHHhhCC---CCCccchHHHHHHHHHhcCCC---e
Q 035555 121 QKGPCVISLVGMGGIGKTTLAQFAYNNDDVKKIL-RKEYGIARAIIEALTYS---SSNFVEFQSLMQHIQKHVAGK---K 193 (767)
Q Consensus 121 ~~~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~~i~~~i~~~l~~~---~~~~~~~~~~~~~l~~~l~~k---~ 193 (767)
....++..|.|.+|.||||+.++.++.. ...+ ..-.....++.+.+... .............+.+....+ -
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~~~--~~lVlTpT~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~~~~~~~ 235 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVNFE--EDLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQF 235 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCCTT--TCEEEESCHHHHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTSSCCCCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhccC--CeEEEeCCHHHHHHHHHHhhhcCccccccceEEEeHHhhcCCCCCCCCcC
Confidence 3478899999999999999999988620 0000 00233334444444321 111112222333333322211 3
Q ss_pred EEEEEeCCCCcChhhHHHHHHhhhcCCCCcEEEEEcC
Q 035555 194 LLLVLDDVWNEDFYKWEQFYNCLKTCLHGSKILITTR 230 (767)
Q Consensus 194 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR 230 (767)
=++|+|++.-.+...+..+....+ ..++|+.--
T Consensus 236 d~liiDE~sm~~~~~l~~l~~~~~----~~~vilvGD 268 (446)
T 3vkw_A 236 KRLFIDEGLMLHTGCVNFLVEMSL----CDIAYVYGD 268 (446)
T ss_dssp SEEEEETGGGSCHHHHHHHHHHTT----CSEEEEEEC
T ss_pred CEEEEeCcccCCHHHHHHHHHhCC----CCEEEEecC
Confidence 479999995444444444443332 256666544
No 438
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.83 E-value=0.16 Score=53.93 Aligned_cols=42 Identities=43% Similarity=0.367 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCCC---CCCCCEEEEEEccCCChHHHHHHHHHc
Q 035555 105 EKSELVNRLLCESSK---EQKGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 105 ~~~~l~~~L~~~~~~---~~~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
..++|.+++...... .....++|.|+|.+|+||||+|..+..
T Consensus 77 ~~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 77 VYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp HHHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHH
T ss_pred HHHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345566666433110 112457999999999999999988765
No 439
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.83 E-value=0.13 Score=49.92 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.8
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+|+|.|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 556899999999999999999887
No 440
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.80 E-value=0.083 Score=58.87 Aligned_cols=51 Identities=25% Similarity=0.329 Sum_probs=34.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCC-----CCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 97 SEIFGREKEKSELVNRLLCESSKE-----QKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~-----~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
+.++|.++.+..+.-.+....... -.+..-|.++|++|+|||+||+++++.
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 468999987777655554321000 001115889999999999999999874
No 441
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=90.75 E-value=0.5 Score=48.57 Aligned_cols=80 Identities=20% Similarity=0.198 Sum_probs=43.5
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcccchhh----hhhhHHHHHHHHHHHhhCCCC-----CccchHHHHHHHHHhcC-CC
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNNDDVKK----ILRKEYGIARAIIEALTYSSS-----NFVEFQSLMQHIQKHVA-GK 192 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~~i~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l~-~k 192 (767)
.-+++.|+|++|+||||||.+++....... .++.........++.++.... ...+.++....+...++ .+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGV 139 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcC
Confidence 457999999999999999988876321110 111100000113444433211 12334555555555443 45
Q ss_pred eEEEEEeCCC
Q 035555 193 KLLLVLDDVW 202 (767)
Q Consensus 193 ~~LlVlDdv~ 202 (767)
.-++|+|.+.
T Consensus 140 ~dlvVIDSi~ 149 (356)
T 3hr8_A 140 VDLIVVDSVA 149 (356)
T ss_dssp CSEEEEECTT
T ss_pred CCeEEehHhh
Confidence 5688899874
No 442
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.71 E-value=0.12 Score=50.44 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+++|+|+.|+|||||.+.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999976
No 443
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.69 E-value=0.13 Score=50.84 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.6
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|+|+.|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 34899999999999999999865
No 444
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.59 E-value=0.12 Score=50.52 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+++|+|+.|+|||||.+.+..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999976
No 445
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.56 E-value=0.12 Score=51.62 Aligned_cols=23 Identities=39% Similarity=0.362 Sum_probs=20.7
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.++.|+|++|+||||||.++..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999998876
No 446
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.49 E-value=0.28 Score=52.97 Aligned_cols=42 Identities=29% Similarity=0.200 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCCC---CCCCCEEEEEEccCCChHHHHHHHHHc
Q 035555 105 EKSELVNRLLCESSK---EQKGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 105 ~~~~l~~~L~~~~~~---~~~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
..++|.+++...... .....++|+|+|.+|+||||++..+..
T Consensus 79 v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 79 VFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp HHHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345556666442211 113578999999999999999988874
No 447
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.48 E-value=0.16 Score=51.10 Aligned_cols=24 Identities=38% Similarity=0.296 Sum_probs=21.3
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+++|+|.+|+||||++..++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988865
No 448
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.47 E-value=0.13 Score=48.14 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.1
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999998764
No 449
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.47 E-value=0.13 Score=51.23 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+++|+|+.|.|||||.+.+..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999987
No 450
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.41 E-value=1.9 Score=47.99 Aligned_cols=113 Identities=16% Similarity=0.156 Sum_probs=60.1
Q ss_pred EEEEEEccCCChHHHHHHHHHccc-----chh-------------hhhhh-HH--------------HHHHHHHHHhhCC
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNND-----DVK-------------KILRK-EY--------------GIARAIIEALTYS 171 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~~-----~~~-------------~~F~~-~~--------------~i~~~i~~~l~~~ 171 (767)
.+++|+|+.|+|||||++.++.-. ++. ..|+. +. +....+++.++..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~ 462 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII 462 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc
Confidence 489999999999999999997521 000 00100 11 1122334444432
Q ss_pred CC------CccchHHHHHHHHHhcCCCeEEEEEeCCCC-cChhhHHHHHHhhhcC--CCCcEEEEEcCchhHHhh
Q 035555 172 SS------NFVEFQSLMQHIQKHVAGKKLLLVLDDVWN-EDFYKWEQFYNCLKTC--LHGSKILITTRKETVARI 237 (767)
Q Consensus 172 ~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~ 237 (767)
.. .....+...-.|...|-..+-+|+||.--. -|...-..+...+... ..|..||++|-+...+..
T Consensus 463 ~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~ 537 (607)
T 3bk7_A 463 DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY 537 (607)
T ss_dssp TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 11 112233333456677777888999998633 2333333344443321 234457777777555443
No 451
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.37 E-value=0.15 Score=51.45 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.8
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|.|.+|+|||||+..++.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 35999999999999999998876
No 452
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.32 E-value=0.13 Score=51.87 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=20.6
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|+|+.|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 45899999999999999999864
No 453
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.31 E-value=1.8 Score=43.80 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.2
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.-.++.|.|.+|+||||+|.+++.+
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4468999999999999999888653
No 454
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.31 E-value=0.23 Score=49.94 Aligned_cols=23 Identities=52% Similarity=0.588 Sum_probs=20.8
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
..+++++|.+|+||||++..++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999988764
No 455
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.20 E-value=0.15 Score=50.54 Aligned_cols=21 Identities=38% Similarity=0.669 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHHc
Q 035555 126 VISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999876
No 456
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.13 E-value=0.18 Score=48.55 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.1
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
....|.|.|+.|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999874
No 457
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.04 E-value=0.18 Score=46.59 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.8
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999874
No 458
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.03 E-value=0.29 Score=52.76 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.9
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.+.|.|.+|+||||++.++...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 8999999999999999888763
No 459
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.00 E-value=0.15 Score=45.70 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999998764
No 460
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.87 E-value=0.21 Score=45.50 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.9
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
....|.|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999998764
No 461
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.87 E-value=0.18 Score=52.47 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.7
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.+|+|.|+.|+||||||..++..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 58999999999999999998763
No 462
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.84 E-value=0.18 Score=53.10 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.8
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 446999999999999999999987
No 463
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.79 E-value=0.18 Score=48.94 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.3
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...|.|.|..|+||||+++.+.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999998874
No 464
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.73 E-value=0.18 Score=45.87 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=20.9
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.-.|+|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346899999999999999998764
No 465
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.72 E-value=0.16 Score=49.96 Aligned_cols=22 Identities=32% Similarity=0.381 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+++|+|+.|+|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 466
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.72 E-value=0.25 Score=54.18 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.0
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...+|+|+|+.|+|||||++.+...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 3468999999999999999999873
No 467
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.66 E-value=0.19 Score=45.25 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=20.7
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.-.|.|+|.+|+|||||+..+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999998764
No 468
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=89.63 E-value=0.22 Score=46.27 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=21.9
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999874
No 469
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.63 E-value=0.59 Score=51.99 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.3
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|+|+.|.|||||++.+..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999998854
No 470
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=89.61 E-value=0.25 Score=50.93 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.8
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.-.++.|+|+.|+|||||+.+++.
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~ 153 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAV 153 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 557999999999999999998876
No 471
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=89.50 E-value=0.2 Score=50.18 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=19.6
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.++|+|.|-||+||||+|..+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 36888899999999999977754
No 472
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.46 E-value=0.24 Score=46.96 Aligned_cols=22 Identities=27% Similarity=0.175 Sum_probs=18.7
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.|.+.|.||+||||+|..+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~ 28 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAH 28 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHH
Confidence 4588999999999999877765
No 473
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.45 E-value=0.18 Score=46.77 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
-.|.|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999764
No 474
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=89.39 E-value=0.26 Score=49.64 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHH
Q 035555 106 KSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAY 145 (767)
Q Consensus 106 ~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~ 145 (767)
++++.+.+. -.+++|+|+.|+|||||.+.+.
T Consensus 156 i~~L~~~l~---------G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE---------GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT---------TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc---------CcEEEEECCCCCCHHHHHHHHH
Confidence 566666653 2489999999999999999998
No 475
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.39 E-value=0.19 Score=46.22 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=19.4
Q ss_pred EEEEEccCCChHHHHHHHHHc
Q 035555 126 VISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~ 146 (767)
+.+|+|+.|.|||||+.+++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999864
No 476
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.37 E-value=0.2 Score=49.64 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=18.8
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
++|+|.|-||+||||+|..+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHH
Confidence 5788899999999999977654
No 477
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.36 E-value=0.18 Score=49.07 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=20.6
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.-.++.|.|.+|+||||||.+++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999987765
No 478
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.30 E-value=0.19 Score=50.20 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.6
Q ss_pred CEEEEEEccCCChHHHHHHHHHc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
-.+++|+|+.|.|||||.+.+..
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999864
No 479
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.24 E-value=0.23 Score=45.19 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 480
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.18 E-value=0.24 Score=45.53 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=22.0
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
....|.|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999875
No 481
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.15 E-value=0.22 Score=47.35 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=21.8
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
....|.|+|.+|+|||||+..+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998764
No 482
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=89.08 E-value=0.27 Score=45.74 Aligned_cols=25 Identities=16% Similarity=0.127 Sum_probs=22.0
Q ss_pred CCCEEEEEEccCCChHHHHHHHHHc
Q 035555 122 KGPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 122 ~~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+..+|+|+|++|+||+|+|..+.+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHH
Confidence 3668999999999999999988765
No 483
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=89.06 E-value=0.21 Score=45.12 Aligned_cols=21 Identities=43% Similarity=0.528 Sum_probs=19.1
Q ss_pred EEEEEccCCChHHHHHHHHHc
Q 035555 126 VISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.|.|+|.+|+|||||+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588999999999999999865
No 484
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.05 E-value=0.37 Score=49.39 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.5
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+++|+|++|+|||||.+.+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999863
No 485
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=89.04 E-value=0.18 Score=45.29 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.4
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.|.|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4889999999999999988753
No 486
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.04 E-value=0.42 Score=49.10 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=21.5
Q ss_pred CCEEEEEEccCCChHHHHHHHHHc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
...+|+|+|.+|+|||||+..+..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 568999999999999999988864
No 487
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=89.03 E-value=0.26 Score=45.62 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=21.6
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
....|.|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457899999999999999998775
No 488
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.02 E-value=0.21 Score=45.16 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.2
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
-.|.|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999998764
No 489
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.01 E-value=0.2 Score=44.99 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=20.8
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...|.|+|.+|+|||||...+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999998764
No 490
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=88.87 E-value=0.51 Score=47.41 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEEccCCChHHHHHHHHHcc
Q 035555 106 KSELVNRLLCESSKEQKGPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 106 ~~~l~~~L~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
++++.+.|.............|+|+|.+|+|||||..++...
T Consensus 8 ~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 8 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp HHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 455556565432212335668999999999999999999765
No 491
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.84 E-value=0.21 Score=45.13 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=20.8
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.-.|.|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999998764
No 492
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=88.83 E-value=1.9 Score=43.80 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=21.3
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...++.|.|.+|+||||+|..++.+
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3458999999999999999888664
No 493
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.76 E-value=0.21 Score=44.83 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.0
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
-.|+|+|.+|+|||||...+.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999998764
No 494
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.72 E-value=0.22 Score=44.92 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.6
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 035555 126 VISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 126 ~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
.|.|+|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999988754
No 495
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.66 E-value=0.24 Score=50.95 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=20.7
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYN 146 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~ 146 (767)
.+++|+|+.|.|||||.+.+..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 4899999999999999999987
No 496
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=88.65 E-value=0.22 Score=46.04 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=20.7
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..-.|.|+|.+|+|||||+..+.+.
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3446889999999999999877654
No 497
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=88.65 E-value=0.26 Score=46.16 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=20.9
Q ss_pred CEEEEEEccCCChHHHHHHHHHcc
Q 035555 124 PCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 124 ~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
...|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999998764
No 498
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.65 E-value=0.22 Score=44.67 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=19.9
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
-.|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999888754
No 499
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.64 E-value=0.22 Score=44.92 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 035555 125 CVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 125 ~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
-.|.|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999998764
No 500
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=88.59 E-value=0.26 Score=46.39 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=20.7
Q ss_pred CCEEEEEEccCCChHHHHHHHHHcc
Q 035555 123 GPCVISLVGMGGIGKTTLAQFAYNN 147 (767)
Q Consensus 123 ~~~~v~I~G~gGiGKTtLa~~v~~~ 147 (767)
..-.|+|+|.+|+|||||...+.+.
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3457889999999999999888754
Done!