BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035556
(261 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EX4|A Chain A, Crystal Structure Of Human Methyltransferase Ad-003 In
Complex With S-adenosyl-l-homocysteine
pdb|2EX4|B Chain B, Crystal Structure Of Human Methyltransferase Ad-003 In
Complex With S-adenosyl-l-homocysteine
Length = 241
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 77 DFVFEHASLDKFYVVWP---MTDRHASLFLMRCKKSGNPEAL 115
DF E S D ++ W +TD+H + FL RCK S P +
Sbjct: 139 DFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGI 180
>pdb|3L6W|A Chain A, Structure Of The Collar Functional Unit (Klh1-H) Of
Keyhole Limpet Hemocyanin
pdb|3L6W|B Chain B, Structure Of The Collar Functional Unit (Klh1-H) Of
Keyhole Limpet Hemocyanin
pdb|3QJO|A Chain A, Refined Structure Of The Functional Unit (Klh1-H) Of
Keyhole Limpet Hemocyanin
pdb|3QJO|B Chain B, Refined Structure Of The Functional Unit (Klh1-H) Of
Keyhole Limpet Hemocyanin
Length = 491
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 44 LLTEVMAQVASTSLVDLSRLKLSCKYFLQAADDDFVFEHASLDKFYVVW 92
L EV A + +S L+ S A D F+ HASLDK +++W
Sbjct: 169 LHNEVHALIGGAEKYSMSTLEYS------AFDPYFMIHHASLDKIWIIW 211
>pdb|1Y3T|A Chain A, Crystal Structure Of Yxag, A Dioxygenase From Bacillus
Subtilis
pdb|1Y3T|B Chain B, Crystal Structure Of Yxag, A Dioxygenase From Bacillus
Subtilis
Length = 337
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 202 VDQHGEYSAETCDCLRTRMRGWDDG 226
VD + EY ET CL +M W DG
Sbjct: 232 VDHYHEYHTETFYCLEGQMTMWTDG 256
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 222 GWDDGLDKLIGSCESCLCVTEVNFFCDLLRSSSCCKEW 259
WD D+L+ SCLC+ E LL+ S CK W
Sbjct: 8 SWDSLPDELLLGIFSCLCLPE------LLKVSGVCKRW 39
>pdb|4FXH|A Chain A, Crystal Structure Of The Isolated E. Coli Rele Toxin,
P212121 Form
pdb|4FXH|B Chain B, Crystal Structure Of The Isolated E. Coli Rele Toxin,
P212121 Form
pdb|4FXI|A Chain A, Crystal Structure Of The Isolated E. Coli Rele Toxin, P21
Form
pdb|4FXI|B Chain B, Crystal Structure Of The Isolated E. Coli Rele Toxin, P21
Form
pdb|4FXI|C Chain C, Crystal Structure Of The Isolated E. Coli Rele Toxin, P21
Form
Length = 95
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 103 LMRCKKSGNPEALYRQGMHDYFSLGLTNSGFRLLKRAADKK 143
L+ +S EA +GM D + + L +SG+RL+ + D+K
Sbjct: 30 LVEVLESPRIEANKLRGMPDXYKIKLRSSGYRLVYQVIDEK 70
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 222 GWDDGLDKLIGSCESCLCVTEVNFFCDLLRSSSCCKEW 259
WD D+L+ SCLC+ E LL+ S CK W
Sbjct: 8 SWDSLPDELLLGIFSCLCLPE------LLKVSGVCKRW 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,744,719
Number of Sequences: 62578
Number of extensions: 241451
Number of successful extensions: 566
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 562
Number of HSP's gapped (non-prelim): 9
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)