BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035556
(261 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FXC7|FB79_ARATH Putative F-box protein At1g67623 OS=Arabidopsis thaliana
GN=At1g67623 PE=4 SV=1
Length = 296
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 117/223 (52%), Gaps = 19/223 (8%)
Query: 16 ISSSLSITKRTRKKRKKLGTSIESLPHALLTEVMAQVASTSLVDLSRLKLSCKYFLQAAD 75
+S SL + RK + K ++SLP LL E+ + ++SL + L+L K F + D
Sbjct: 3 VSLSLHASSSIRKSKTKASLCLDSLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICD 62
Query: 76 DDFVFEHASLDKF-YVVWPMTDRHASLFLMRCKKSGNPEALYRQGMHDYFSLGLTNSGFR 134
+ +VF SL + ++ W +++ F+ RC +S NPEAL+++G +YF L + G
Sbjct: 63 EKYVFYRLSLKEIEFLPW---HENSAKFIERCTESRNPEALFQKGFINYFRDKLQDRGLE 119
Query: 135 LLKRAADKKHPEATYVYTIIMLLCCGSQFKKQGFELLSSL------KSTYGIRECRTKIR 188
L AA+K EA YVY +I L+C G + K++GFE+LSS+ + + E R KI+
Sbjct: 120 YLAEAAEKGIKEAKYVYGVI-LICLGGKTKQKGFEILSSVIKQLMSTTMNELVEFRYKIQ 178
Query: 189 AGVINSLWIRNITVDQ-HGEYSAETCDC-LRTRM------RGW 223
W N V+Q Y +E C C +TRM RGW
Sbjct: 179 KIRYGFWWSDNTVVEQLKTAYVSEKCKCDCKTRMLLLVMNRGW 221
>sp|Q1PEW8|FB127_ARATH F-box protein At2g35280 OS=Arabidopsis thaliana GN=At2g35280 PE=2
SV=1
Length = 163
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 2/126 (1%)
Query: 35 TSIESLPHALLTEVMAQVASTSLVDLSRLKLSCKYFLQAADDDFVFEHASLDKFYVVWPM 94
+ +E+LP LL E++A++ S D LSCK +A+D+ V + +L V P+
Sbjct: 9 SRLEALPQDLLREIVAKIGVKSAEDYHNCILSCKELGASANDERVLKTLNL-ALLVKKPL 67
Query: 95 TDRHASLFLMRCKKSGNPEALYRQGMHDYFSLGLTNSGFRLLKRAADKKHPEATYVYTII 154
+ R L + +C + NP+A Y +G+ YF+L + + AA+ EA Y+Y +
Sbjct: 68 SCRKHLLIMKKCLANNNPDAHYIKGIIWYFNLDHCDVDLHHIGIAANGGQKEAIYMYA-M 126
Query: 155 MLLCCG 160
+LLC G
Sbjct: 127 LLLCRG 132
>sp|Q9FYF9|FB76_ARATH F-box protein At1g67340 OS=Arabidopsis thaliana GN=At1g67340 PE=1
SV=1
Length = 379
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 37 IESLPHALLTEVMAQVASTS--LVDLSRLKLSCKYFLQAADDDFVFEHASLDKFYVVWPM 94
++S+P L+ ++ ++ STS D + L+CK A + V S V
Sbjct: 44 LDSIPDDLVISILCKLGSTSRCPADFINVLLTCKRLKGLAMNPIVLSRLSPKAIAVKAHN 103
Query: 95 TDRHASLFLMRCKKSGNPEALYRQGMHDYFSLGLTNSGFRLLKRAADKKHPEATYVYTII 154
++ FL RC +G+ EA Y GM ++ L +G L+ +AA H A Y +I
Sbjct: 104 WSEYSHRFLKRCVDAGSLEACYTLGMIRFYCLQNRGNGASLMAKAAISSHAPALYSLAVI 163
Query: 155 ML 156
Sbjct: 164 QF 165
>sp|Q9FK27|FB342_ARATH F-box protein At5g50450 OS=Arabidopsis thaliana GN=At5g50450 PE=2
SV=1
Length = 336
Score = 38.9 bits (89), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 2/121 (1%)
Query: 38 ESLPHALLTEVMAQVA--STSLVDLSRLKLSCKYFLQAADDDFVFEHASLDKFYVVWPMT 95
E L L+ ++ ++A ++S D + +CK + V A V
Sbjct: 23 EDLHDDLIISILRKLATSASSPSDFLTVLSTCKRLNRLGLHPLVLSKAGTQTLAVTAEKW 82
Query: 96 DRHASLFLMRCKKSGNPEALYRQGMHDYFSLGLTNSGFRLLKRAADKKHPEATYVYTIIM 155
+ FL C +GN +A Y GM ++ L SG L+ +AA K H A Y ++I
Sbjct: 83 SDSSHKFLKLCVNAGNIDASYSLGMIRFYCLQNPVSGASLMAKAAIKSHAPALYSLSVIQ 142
Query: 156 L 156
Sbjct: 143 F 143
>sp|Q9UTP9|DBP4_SCHPO ATP-dependent RNA helicase dbp4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dbp4 PE=1 SV=1
Length = 735
Score = 37.7 bits (86), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 30 RKKLGTSIESLPHALLTEVMAQVASTSLVDLSRLKLSCKYFLQAADDDFVFEHASLDKFY 89
R L + SLP T + + + S+ DL+RL L F+ ++D ++L++FY
Sbjct: 203 RTTLDAIVSSLPVHRQTMLFSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFY 262
Query: 90 VVWPMTDRHASLF 102
+ P+T++ LF
Sbjct: 263 LTVPLTEKLDILF 275
>sp|Q4PSN6|FBW1_ARATH F-box/WD-40 repeat-containing protein 1 OS=Arabidopsis thaliana
GN=FBW1 PE=2 SV=1
Length = 410
Score = 34.7 bits (78), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 9/76 (11%)
Query: 22 ITKRTRKKRKKLGTSIES-----LPHALLTEVMAQVASTSLVDLSRLKLSCKYFLQAADD 76
I T+ ++ L +++S LP L E++ +V + SL+ RLKL+CK +L +D
Sbjct: 15 INLFTKIQKPYLSMAMDSKECSLLPFELFEEILCRVPTKSLL---RLKLTCKRWLALFND 71
Query: 77 D-FVFEHASLDKFYVV 91
F+++H +L + +++
Sbjct: 72 KRFIYKHLALVREHII 87
>sp|A5E3K3|DBP4_LODEL ATP-dependent RNA helicase DBP4 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=DBP4 PE=3 SV=1
Length = 775
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 30 RKKLGTSIESLPHALLTEVMAQVASTSLVDLSRLKLS-CKYFLQAADDDFVFEHASLDKF 88
RK++ + LP T + + + S+ DL+RL L+ K ++D D SLD++
Sbjct: 212 RKQIDNILNHLPRTRQTLLFSATHTDSVQDLARLSLTNPKRIGTSSDQDISAIPESLDQY 271
Query: 89 YVVWPMTDR 97
YV P+ ++
Sbjct: 272 YVKVPLNEK 280
>sp|Q67JP9|SYC_SYMTH Cysteine--tRNA ligase OS=Symbiobacterium thermophilum (strain T /
IAM 14863) GN=cysS PE=3 SV=1
Length = 471
Score = 31.2 bits (69), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%)
Query: 14 TWISSSLSITKRTRKKRKKLGTSIESLPHALLTEVMAQVASTSLVDLSRLKLSCKYFLQA 73
T +S S + + TR+ ++L ++ +L H T A++ + L+ L + + F+ A
Sbjct: 303 TQLSFSDQLMEDTRRALERLYNTVANLEHLAKTAPRAEMTAEEQAVLAELSQARERFVAA 362
Query: 74 ADDDF 78
DDDF
Sbjct: 363 MDDDF 367
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,877,520
Number of Sequences: 539616
Number of extensions: 3327221
Number of successful extensions: 9710
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 9699
Number of HSP's gapped (non-prelim): 11
length of query: 261
length of database: 191,569,459
effective HSP length: 115
effective length of query: 146
effective length of database: 129,513,619
effective search space: 18908988374
effective search space used: 18908988374
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.7 bits)