Query 035556
Match_columns 261
No_of_seqs 128 out of 146
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 06:06:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035556.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035556hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1klx_A Cysteine rich protein B 98.7 6.3E-08 2.1E-12 76.9 10.4 83 96-178 41-127 (138)
2 1klx_A Cysteine rich protein B 98.4 2.9E-07 1E-11 73.0 6.5 81 95-178 10-91 (138)
3 3rjv_A Putative SEL1 repeat pr 98.4 4.2E-07 1.4E-11 76.2 7.3 81 96-176 69-157 (212)
4 3rjv_A Putative SEL1 repeat pr 98.3 1.6E-06 5.4E-11 72.7 8.7 84 95-178 33-119 (212)
5 3e4b_A ALGK; tetratricopeptide 98.1 7.3E-06 2.5E-10 76.8 8.7 80 95-175 232-314 (452)
6 1fs1_A SKP2 F-BOX, cyclin A/CD 98.1 1.7E-06 5.8E-11 59.0 2.7 47 34-83 6-52 (53)
7 3e4b_A ALGK; tetratricopeptide 98.0 8.6E-06 2.9E-10 76.3 7.8 81 95-176 302-386 (452)
8 2xm6_A Protein corresponding t 97.9 2.9E-05 9.8E-10 72.3 9.2 83 94-176 93-179 (490)
9 2xm6_A Protein corresponding t 97.9 4.5E-05 1.5E-09 71.0 9.2 79 97-175 132-214 (490)
10 1ouv_A Conserved hypothetical 97.6 0.00024 8.2E-09 60.0 8.5 80 96-175 130-213 (273)
11 1ouv_A Conserved hypothetical 97.5 0.00035 1.2E-08 59.0 9.1 83 95-177 93-179 (273)
12 2e31_A FBS1, F-box only protei 97.1 0.00028 9.5E-09 64.9 3.9 49 34-85 48-97 (297)
13 3l2o_B F-box only protein 4; s 96.5 0.0013 4.3E-08 61.0 3.0 52 34-88 2-53 (312)
14 2ovr_B FBW7, F-BOX/WD repeat p 95.3 0.0093 3.2E-07 53.9 3.2 50 33-85 15-64 (445)
15 2ast_B S-phase kinase-associat 95.0 0.0048 1.6E-07 54.1 0.3 50 34-86 6-55 (336)
16 3v7d_B Cell division control p 95.0 0.0086 2.9E-07 54.1 2.0 49 34-85 12-61 (464)
17 3bee_A Putative YFRE protein; 93.9 0.25 8.6E-06 36.6 7.8 66 110-178 4-73 (93)
18 1p22_A F-BOX/WD-repeat protein 93.5 0.014 4.7E-07 52.8 0.1 50 34-86 8-61 (435)
19 3gyz_A Chaperone protein IPGC; 93.2 0.73 2.5E-05 36.7 9.9 89 96-188 52-144 (151)
20 3ma5_A Tetratricopeptide repea 92.9 0.45 1.6E-05 34.2 7.6 63 109-175 4-68 (100)
21 3k9i_A BH0479 protein; putativ 92.7 0.32 1.1E-05 35.7 6.6 77 96-176 6-89 (117)
22 1hxi_A PEX5, peroxisome target 92.2 0.5 1.7E-05 35.4 7.3 77 96-176 33-113 (121)
23 2e2e_A Formate-dependent nitri 91.9 0.67 2.3E-05 35.9 8.0 78 96-176 60-143 (177)
24 2xev_A YBGF; tetratricopeptide 91.8 1.9 6.5E-05 30.9 9.9 77 96-176 18-104 (129)
25 2lni_A Stress-induced-phosphop 91.7 1.6 5.5E-05 31.0 9.3 77 96-176 32-112 (133)
26 2xcb_A PCRH, regulatory protei 90.3 1.8 6.2E-05 32.6 8.9 76 96-175 34-113 (142)
27 2vgx_A Chaperone SYCD; alterna 89.7 2 6.9E-05 33.2 8.8 77 96-176 37-117 (148)
28 4gco_A Protein STI-1; structur 89.5 3.3 0.00011 31.0 9.8 77 96-176 29-109 (126)
29 3gyz_A Chaperone protein IPGC; 89.3 0.89 3.1E-05 36.1 6.6 62 110-175 34-97 (151)
30 2p1m_B Transport inhibitor res 89.0 0.2 6.8E-06 47.1 2.9 37 35-73 4-40 (594)
31 2kat_A Uncharacterized protein 88.6 3.4 0.00012 29.6 8.9 74 98-175 3-80 (115)
32 2dba_A Smooth muscle cell asso 88.0 2.8 9.7E-05 30.4 8.3 77 96-176 44-127 (148)
33 2kck_A TPR repeat; tetratricop 87.4 3.8 0.00013 27.9 8.3 77 96-176 22-105 (112)
34 3upv_A Heat shock protein STI1 87.4 3.9 0.00013 29.6 8.6 77 96-176 20-100 (126)
35 3sz7_A HSC70 cochaperone (SGT) 87.3 3.3 0.00011 31.6 8.6 76 96-175 27-106 (164)
36 3q49_B STIP1 homology and U bo 86.9 4.3 0.00015 29.3 8.6 76 96-175 25-104 (137)
37 4ga2_A E3 SUMO-protein ligase 86.2 1.7 5.7E-05 33.5 6.3 61 95-156 46-110 (150)
38 1na3_A Designed protein CTPR2; 86.1 2.5 8.5E-05 28.3 6.5 62 111-176 8-71 (91)
39 2l6j_A TPR repeat-containing p 85.5 2.4 8.3E-05 29.4 6.4 62 111-176 3-66 (111)
40 1elw_A TPR1-domain of HOP; HOP 85.4 5.6 0.00019 27.2 8.3 77 96-176 20-100 (118)
41 1hh8_A P67PHOX, NCF-2, neutrop 85.3 2.1 7.2E-05 33.6 6.6 76 96-176 22-99 (213)
42 2pl2_A Hypothetical conserved 85.2 3.4 0.00012 33.6 8.0 77 96-176 100-179 (217)
43 2kck_A TPR repeat; tetratricop 84.6 2.3 7.9E-05 29.0 5.8 64 109-176 3-68 (112)
44 1na0_A Designed protein CTPR3; 84.5 6.4 0.00022 27.1 8.3 77 96-176 25-105 (125)
45 3mkr_A Coatomer subunit epsilo 84.4 2.8 9.6E-05 36.2 7.5 73 96-175 81-157 (291)
46 2xev_A YBGF; tetratricopeptide 84.1 3.1 0.00011 29.7 6.6 61 112-176 2-67 (129)
47 3urz_A Uncharacterized protein 84.0 3.4 0.00012 33.4 7.4 78 96-175 70-151 (208)
48 2pl2_A Hypothetical conserved 83.9 2.9 0.0001 34.0 7.1 45 111-156 4-50 (217)
49 1hh8_A P67PHOX, NCF-2, neutrop 83.8 5.6 0.00019 31.1 8.6 77 96-176 53-149 (213)
50 1pc2_A Mitochondria fission pr 83.7 2.4 8.3E-05 34.9 6.4 75 99-176 17-99 (152)
51 3rkv_A Putative peptidylprolyl 83.4 4.1 0.00014 31.0 7.4 62 110-175 61-124 (162)
52 1zu2_A Mitochondrial import re 83.3 1.9 6.5E-05 35.7 5.7 88 99-187 21-131 (158)
53 4gcn_A Protein STI-1; structur 83.0 5.9 0.0002 29.5 8.0 78 96-177 24-112 (127)
54 2vyi_A SGTA protein; chaperone 83.0 9.1 0.00031 26.5 8.6 77 96-176 28-108 (131)
55 3vtx_A MAMA; tetratricopeptide 82.9 4.2 0.00014 31.2 7.3 77 96-176 89-169 (184)
56 1elr_A TPR2A-domain of HOP; HO 82.6 5.9 0.0002 27.6 7.5 77 96-176 20-107 (131)
57 2vq2_A PILW, putative fimbrial 82.3 6.3 0.00022 30.4 8.2 15 127-141 91-105 (225)
58 2vgx_A Chaperone SYCD; alterna 81.5 3.4 0.00012 31.8 6.3 69 103-175 10-82 (148)
59 3qky_A Outer membrane assembly 81.3 4.1 0.00014 33.5 7.1 65 108-176 11-80 (261)
60 2fo7_A Synthetic consensus TPR 81.2 11 0.00037 26.0 8.4 30 127-156 49-80 (136)
61 3urz_A Uncharacterized protein 81.1 2.7 9.1E-05 34.0 5.7 78 96-176 104-185 (208)
62 4gyw_A UDP-N-acetylglucosamine 81.1 4.3 0.00015 40.8 8.3 78 95-176 58-139 (723)
63 1a17_A Serine/threonine protei 81.1 9.8 0.00034 28.0 8.6 75 97-175 30-108 (166)
64 1xnf_A Lipoprotein NLPI; TPR, 81.0 9 0.00031 30.7 8.9 76 96-175 59-138 (275)
65 2xcb_A PCRH, regulatory protei 81.0 3.9 0.00013 30.6 6.4 61 111-175 17-79 (142)
66 3u4t_A TPR repeat-containing p 80.6 7.4 0.00025 31.4 8.3 77 96-176 53-136 (272)
67 3qky_A Outer membrane assembly 80.1 4 0.00014 33.6 6.6 80 96-176 31-125 (261)
68 4ga2_A E3 SUMO-protein ligase 79.9 7.3 0.00025 29.8 7.7 75 97-175 14-92 (150)
69 2lni_A Stress-induced-phosphop 79.8 6.9 0.00023 27.5 7.0 63 110-176 14-78 (133)
70 2fbn_A 70 kDa peptidylprolyl i 79.7 9.9 0.00034 29.8 8.6 59 113-175 89-149 (198)
71 3sz7_A HSC70 cochaperone (SGT) 79.0 5.5 0.00019 30.3 6.7 61 111-175 10-72 (164)
72 3upv_A Heat shock protein STI1 78.9 5.9 0.0002 28.5 6.6 61 112-176 4-66 (126)
73 2fo7_A Synthetic consensus TPR 78.9 13 0.00045 25.5 9.0 76 96-175 51-130 (136)
74 2c2l_A CHIP, carboxy terminus 78.3 9.3 0.00032 32.5 8.6 76 96-175 20-99 (281)
75 1hxi_A PEX5, peroxisome target 78.0 5.5 0.00019 29.5 6.3 59 114-176 19-79 (121)
76 2if4_A ATFKBP42; FKBP-like, al 77.9 12 0.00042 32.9 9.5 77 96-176 195-292 (338)
77 1na3_A Designed protein CTPR2; 77.9 5.2 0.00018 26.6 5.6 60 96-156 25-88 (91)
78 4gyw_A UDP-N-acetylglucosamine 77.8 6.2 0.00021 39.6 8.3 77 95-175 92-172 (723)
79 3as5_A MAMA; tetratricopeptide 77.4 15 0.00052 27.0 8.6 76 96-175 92-171 (186)
80 3hym_B Cell division cycle pro 77.2 13 0.00045 30.5 9.0 47 126-175 206-263 (330)
81 3qou_A Protein YBBN; thioredox 77.1 4.9 0.00017 34.4 6.4 97 75-176 68-179 (287)
82 2e2e_A Formate-dependent nitri 77.0 8.6 0.00029 29.4 7.3 79 96-176 26-109 (177)
83 2r5s_A Uncharacterized protein 76.9 3.5 0.00012 32.1 5.0 13 144-156 107-119 (176)
84 2ho1_A Type 4 fimbrial biogene 76.7 9.5 0.00032 30.4 7.8 76 96-175 87-168 (252)
85 3ogk_B Coronatine-insensitive 76.7 0.88 3E-05 42.7 1.6 34 38-73 14-47 (592)
86 3q49_B STIP1 homology and U bo 76.4 9.5 0.00033 27.4 7.1 63 110-176 7-71 (137)
87 4f3v_A ESX-1 secretion system 75.8 4.8 0.00017 36.1 6.3 62 113-178 172-238 (282)
88 3hym_B Cell division cycle pro 75.5 15 0.00051 30.1 8.9 75 97-175 108-186 (330)
89 4gco_A Protein STI-1; structur 75.5 9.9 0.00034 28.3 7.1 60 113-176 14-75 (126)
90 2r5s_A Uncharacterized protein 74.5 10 0.00034 29.3 7.2 73 99-175 93-171 (176)
91 3u4t_A TPR repeat-containing p 74.3 9.7 0.00033 30.7 7.3 79 95-177 18-103 (272)
92 2pzi_A Probable serine/threoni 74.3 8 0.00027 37.8 7.9 75 97-175 408-494 (681)
93 2yhc_A BAMD, UPF0169 lipoprote 74.1 8.9 0.00031 31.0 7.0 61 111-175 3-68 (225)
94 2h6f_A Protein farnesyltransfe 73.8 8.5 0.00029 35.1 7.5 76 96-175 148-227 (382)
95 1ihg_A Cyclophilin 40; ppiase 73.5 7.8 0.00027 35.0 7.1 63 110-176 271-335 (370)
96 2ho1_A Type 4 fimbrial biogene 72.6 23 0.0008 28.0 9.1 77 96-176 53-133 (252)
97 2hr2_A Hypothetical protein; a 72.4 18 0.00063 29.6 8.5 88 97-189 28-151 (159)
98 4eqf_A PEX5-related protein; a 72.2 14 0.00048 31.4 8.1 75 97-175 194-274 (365)
99 4i17_A Hypothetical protein; T 71.8 17 0.00057 28.8 8.1 77 96-176 23-104 (228)
100 3as5_A MAMA; tetratricopeptide 71.7 19 0.00065 26.4 7.9 77 96-176 58-138 (186)
101 1elr_A TPR2A-domain of HOP; HO 70.9 13 0.00044 25.8 6.5 61 112-176 4-66 (131)
102 1na0_A Designed protein CTPR3; 70.8 15 0.00051 25.1 6.7 60 112-175 9-70 (125)
103 3edt_B KLC 2, kinesin light ch 70.6 8.5 0.00029 30.7 6.0 77 95-175 16-112 (283)
104 1p5q_A FKBP52, FK506-binding p 70.3 19 0.00064 31.6 8.7 76 96-175 163-257 (336)
105 3vtx_A MAMA; tetratricopeptide 70.3 13 0.00046 28.2 6.9 96 74-176 2-101 (184)
106 3uq3_A Heat shock protein STI1 70.1 24 0.00082 27.7 8.6 76 96-175 155-234 (258)
107 2dba_A Smooth muscle cell asso 69.8 19 0.00064 25.8 7.3 63 110-176 26-93 (148)
108 2vyi_A SGTA protein; chaperone 69.8 15 0.00052 25.3 6.6 62 111-176 11-74 (131)
109 1elw_A TPR1-domain of HOP; HOP 69.7 12 0.0004 25.4 5.9 62 111-176 3-66 (118)
110 2kc7_A BFR218_protein; tetratr 69.3 10 0.00035 25.9 5.5 51 123-176 10-63 (99)
111 4gcn_A Protein STI-1; structur 69.2 12 0.00041 27.7 6.3 58 114-175 10-69 (127)
112 1xnf_A Lipoprotein NLPI; TPR, 69.0 11 0.00039 30.1 6.5 45 96-140 127-171 (275)
113 2vq2_A PILW, putative fimbrial 69.0 31 0.0011 26.3 8.8 77 96-176 24-105 (225)
114 4abn_A Tetratricopeptide repea 68.6 12 0.00041 34.6 7.4 62 111-176 101-165 (474)
115 2ond_A Cleavage stimulation fa 68.3 25 0.00087 29.7 8.9 76 97-176 81-162 (308)
116 4f3v_A ESX-1 secretion system 68.3 3.8 0.00013 36.8 3.7 59 114-176 137-199 (282)
117 4eqf_A PEX5-related protein; a 68.1 24 0.00084 29.9 8.8 77 96-176 81-161 (365)
118 3ieg_A DNAJ homolog subfamily 67.4 28 0.00094 28.7 8.7 77 96-176 250-334 (359)
119 4i17_A Hypothetical protein; T 67.0 31 0.0011 27.2 8.7 78 96-177 58-146 (228)
120 1wao_1 Serine/threonine protei 66.4 19 0.00065 33.5 8.3 76 96-175 22-101 (477)
121 2ond_A Cleavage stimulation fa 66.3 31 0.0011 29.1 9.1 76 98-176 152-231 (308)
122 1w3b_A UDP-N-acetylglucosamine 66.2 25 0.00085 30.2 8.5 76 96-175 253-332 (388)
123 2q7f_A YRRB protein; TPR, prot 66.1 28 0.00097 27.1 8.2 76 96-175 107-186 (243)
124 1fch_A Peroxisomal targeting s 65.9 25 0.00084 29.6 8.3 30 127-156 265-296 (368)
125 2q7f_A YRRB protein; TPR, prot 65.9 21 0.00074 27.8 7.4 78 95-176 140-221 (243)
126 3mkr_A Coatomer subunit epsilo 65.7 28 0.00097 29.7 8.7 76 96-175 146-227 (291)
127 2c2l_A CHIP, carboxy terminus 65.4 18 0.0006 30.8 7.3 62 110-175 2-65 (281)
128 3cv0_A Peroxisome targeting si 65.4 33 0.0011 27.9 8.8 47 126-175 219-267 (327)
129 4g1t_A Interferon-induced prot 64.0 9.8 0.00034 33.6 5.5 79 95-176 349-458 (472)
130 2pzi_A Probable serine/threoni 63.9 14 0.00047 36.1 7.0 62 108-176 390-461 (681)
131 3qou_A Protein YBBN; thioredox 63.9 12 0.00042 31.8 6.0 45 129-176 201-247 (287)
132 2vsy_A XCC0866; transferase, g 63.7 27 0.00091 32.5 8.7 80 95-176 72-156 (568)
133 2vsy_A XCC0866; transferase, g 63.7 15 0.00052 34.2 7.0 78 95-176 38-119 (568)
134 1fch_A Peroxisomal targeting s 63.4 34 0.0012 28.6 8.7 76 97-176 198-279 (368)
135 2v5f_A Prolyl 4-hydroxylase su 62.8 21 0.00071 25.8 6.3 61 111-175 4-73 (104)
136 2gw1_A Mitochondrial precursor 62.2 15 0.00053 32.3 6.5 62 112-176 186-265 (514)
137 2yhc_A BAMD, UPF0169 lipoprote 61.4 27 0.00094 28.0 7.4 80 96-176 20-124 (225)
138 2y4t_A DNAJ homolog subfamily 60.9 38 0.0013 29.3 8.8 77 96-176 42-122 (450)
139 1kt0_A FKBP51, 51 kDa FK506-bi 60.6 27 0.00091 32.1 8.1 77 96-176 284-379 (457)
140 3cv0_A Peroxisome targeting si 58.5 50 0.0017 26.8 8.6 76 97-176 155-234 (327)
141 2y4t_A DNAJ homolog subfamily 58.0 52 0.0018 28.5 9.1 77 96-176 273-357 (450)
142 2h6f_A Protein farnesyltransfe 57.2 53 0.0018 29.7 9.4 59 98-156 218-285 (382)
143 3ieg_A DNAJ homolog subfamily 56.2 60 0.002 26.6 8.8 75 97-175 137-215 (359)
144 4abn_A Tetratricopeptide repea 55.1 24 0.00081 32.5 6.7 76 97-175 196-285 (474)
145 3uq3_A Heat shock protein STI1 52.7 79 0.0027 24.5 11.0 75 98-176 123-201 (258)
146 1a17_A Serine/threonine protei 51.9 58 0.002 23.6 7.3 76 96-175 63-144 (166)
147 2gw1_A Mitochondrial precursor 51.3 62 0.0021 28.3 8.5 76 96-175 22-100 (514)
148 1w3b_A UDP-N-acetylglucosamine 51.2 74 0.0025 27.1 8.9 75 97-175 220-298 (388)
149 1nzn_A CGI-135 protein, fissio 49.2 78 0.0027 25.0 8.0 73 100-175 21-101 (126)
150 3ulq_A Response regulator aspa 49.1 45 0.0015 28.8 7.2 77 95-175 199-291 (383)
151 2xpi_A Anaphase-promoting comp 48.9 61 0.0021 29.4 8.3 77 96-176 491-578 (597)
152 3ulq_A Response regulator aspa 48.7 27 0.00092 30.2 5.7 76 96-175 119-211 (383)
153 2xpi_A Anaphase-promoting comp 48.4 61 0.0021 29.4 8.2 76 96-175 389-468 (597)
154 4g1t_A Interferon-induced prot 45.6 45 0.0015 29.3 6.7 24 98-121 156-181 (472)
155 3fp2_A TPR repeat-containing p 45.4 78 0.0027 28.0 8.3 75 96-174 41-119 (537)
156 3ro2_A PINS homolog, G-protein 45.2 61 0.0021 26.0 7.0 76 96-175 21-110 (338)
157 4a1s_A PINS, partner of inscut 44.7 50 0.0017 28.2 6.7 76 96-175 64-153 (411)
158 3gw4_A Uncharacterized protein 44.6 29 0.00098 26.4 4.7 60 112-175 26-93 (203)
159 3fp2_A TPR repeat-containing p 44.0 1.1E+02 0.0036 27.1 9.0 76 96-175 292-371 (537)
160 3nf1_A KLC 1, kinesin light ch 43.9 37 0.0013 27.4 5.4 46 95-141 168-223 (311)
161 3edt_B KLC 2, kinesin light ch 43.5 47 0.0016 26.2 5.9 46 95-141 142-197 (283)
162 3k9i_A BH0479 protein; putativ 42.4 14 0.00048 26.5 2.4 47 127-176 4-55 (117)
163 2qfc_A PLCR protein; TPR, HTH, 41.1 1.4E+02 0.0046 24.8 8.8 77 95-175 130-223 (293)
164 1p5q_A FKBP52, FK506-binding p 40.9 45 0.0016 29.0 5.9 62 110-175 145-223 (336)
165 2kat_A Uncharacterized protein 40.8 41 0.0014 23.6 4.7 43 131-176 3-47 (115)
166 3ly7_A Transcriptional activat 40.6 73 0.0025 29.7 7.5 65 111-178 274-340 (372)
167 3sf4_A G-protein-signaling mod 40.4 72 0.0025 26.8 7.0 76 96-175 25-114 (406)
168 2ifu_A Gamma-SNAP; membrane fu 39.3 51 0.0017 27.9 5.9 75 96-175 92-182 (307)
169 3mv2_B Coatomer subunit epsilo 38.2 84 0.0029 28.3 7.4 81 95-176 115-206 (310)
170 2ooe_A Cleavage stimulation fa 38.0 1.3E+02 0.0045 27.3 8.9 74 100-176 258-349 (530)
171 2ooe_A Cleavage stimulation fa 37.4 1.4E+02 0.0047 27.2 8.9 48 95-142 336-385 (530)
172 1qqe_A Vesicular transport pro 36.7 58 0.002 27.3 5.8 57 115-174 39-103 (292)
173 3gw4_A Uncharacterized protein 36.7 55 0.0019 24.7 5.2 75 97-175 43-134 (203)
174 2fbn_A 70 kDa peptidylprolyl i 36.4 1.1E+02 0.0038 23.5 7.1 61 112-176 38-116 (198)
175 4a1s_A PINS, partner of inscut 35.6 51 0.0018 28.2 5.3 77 96-176 279-371 (411)
176 3u3w_A Transcriptional activat 34.9 1.9E+02 0.0065 23.8 9.3 77 96-175 91-182 (293)
177 3rkv_A Putative peptidylprolyl 34.5 55 0.0019 24.4 4.8 59 114-176 13-91 (162)
178 3nf1_A KLC 1, kinesin light ch 34.2 74 0.0025 25.5 5.8 77 95-175 84-180 (311)
179 1qqe_A Vesicular transport pro 33.7 1.3E+02 0.0046 25.0 7.6 78 96-176 93-186 (292)
180 3ma5_A Tetratricopeptide repea 33.2 43 0.0015 23.3 3.7 31 142-175 4-34 (100)
181 3ro3_A PINS homolog, G-protein 31.4 83 0.0028 22.0 5.1 10 147-156 51-60 (164)
182 3q15_A PSP28, response regulat 31.1 69 0.0024 27.6 5.4 58 114-175 103-168 (378)
183 3q15_A PSP28, response regulat 30.0 76 0.0026 27.4 5.5 77 96-176 198-289 (378)
184 3mv2_B Coatomer subunit epsilo 29.1 1.1E+02 0.0036 27.6 6.4 73 99-175 85-163 (310)
185 3u3w_A Transcriptional activat 27.9 1.4E+02 0.0049 24.6 6.8 77 95-175 130-223 (293)
186 2qfc_A PLCR protein; TPR, HTH, 27.3 2.1E+02 0.0073 23.5 7.8 49 124-175 126-182 (293)
187 2if4_A ATFKBP42; FKBP-like, al 27.3 1.3E+02 0.0043 26.2 6.5 61 112-176 179-258 (338)
188 3ro2_A PINS homolog, G-protein 25.2 1.5E+02 0.0051 23.6 6.2 59 113-175 6-70 (338)
189 2l6j_A TPR repeat-containing p 23.7 1.6E+02 0.0056 19.5 7.0 60 96-156 20-89 (111)
190 3ro3_A PINS homolog, G-protein 23.6 1.9E+02 0.0064 20.0 7.2 58 114-175 51-116 (164)
191 1wao_1 Serine/threonine protei 23.4 1.2E+02 0.0042 27.9 5.9 50 123-175 16-67 (477)
192 1kt0_A FKBP51, 51 kDa FK506-bi 23.3 1.7E+02 0.0059 26.5 6.9 61 111-175 267-344 (457)
193 1ihg_A Cyclophilin 40; ppiase 22.7 1E+02 0.0036 27.4 5.2 60 113-176 224-301 (370)
194 3sf4_A G-protein-signaling mod 22.6 2.2E+02 0.0076 23.6 7.0 58 114-175 11-74 (406)
195 3u64_A Protein TP_0956; tetrat 21.4 3.6E+02 0.012 24.4 8.4 76 98-176 181-268 (301)
196 3eiq_C Programmed cell death p 20.9 3.8E+02 0.013 24.5 8.7 57 118-175 222-280 (358)
No 1
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.74 E-value=6.3e-08 Score=76.95 Aligned_cols=83 Identities=7% Similarity=-0.045 Sum_probs=74.2
Q ss_pred CcchHHHHHHHHhcCCchHHHHHHHHHHhc---cCCcHHHHHHHHHHhhcCCchhHHHHHHHHHhccCc-chHHHHHHHH
Q 035556 96 DRHASLFLMRCKKSGNPEALYRQGMHDYFS---LGLTNSGFRLLKRAADKKHPEATYVYTIIMLLCCGS-QFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rCleaGNpeA~Y~~Gm~~~~~---~~~~~~Gl~lL~~AA~~G~~~A~Y~lgmL~l~~~G~-e~~~~a~~~f 171 (261)
..++..++.++++.||++|+|.+|++.+.. .+|.++|+.++.+|++.|++.|.|++|+++.+|.|. .+.++|+++|
T Consensus 41 ~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 120 (138)
T 1klx_A 41 KQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTF 120 (138)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 345889999999999999999999998853 678899999999999999999999999999998886 5699999999
Q ss_pred HHhhccc
Q 035556 172 SSLKSTY 178 (261)
Q Consensus 172 ~~~~~t~ 178 (261)
.++-+.-
T Consensus 121 ~~Aa~~g 127 (138)
T 1klx_A 121 EKACRLG 127 (138)
T ss_dssp HHHHHTT
T ss_pred HHHHHCC
Confidence 9987544
No 2
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.44 E-value=2.9e-07 Score=73.02 Aligned_cols=81 Identities=6% Similarity=-0.096 Sum_probs=68.7
Q ss_pred CCcchHHHHHHHHhcCCchHHHHHHHHHHhccCCcHHHHHHHHHHhhcCCchhHHHHHHHHHhccCc-chHHHHHHHHHH
Q 035556 95 TDRHASLFLMRCKKSGNPEALYRQGMHDYFSLGLTNSGFRLLKRAADKKHPEATYVYTIIMLLCCGS-QFKKQGFELLSS 173 (261)
Q Consensus 95 ~~~ka~~FL~rCleaGNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~G~~~A~Y~lgmL~l~~~G~-e~~~~a~~~f~~ 173 (261)
+..++..++.++++.||++|+ +|++.... ...++|+.++.+|++.|++.|.|++|+++.+|.|. .+.++|+++|.+
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g-~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 86 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC--LSLVSNSQ-INKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSK 86 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH--HHHHTCTT-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh--HHHHHHcC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence 346788999999999999999 77654443 34467999999999999999999999999998886 569999999999
Q ss_pred hhccc
Q 035556 174 LKSTY 178 (261)
Q Consensus 174 ~~~t~ 178 (261)
+-+..
T Consensus 87 Aa~~g 91 (138)
T 1klx_A 87 ACGLN 91 (138)
T ss_dssp HHHTT
T ss_pred HHcCC
Confidence 87543
No 3
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.42 E-value=4.2e-07 Score=76.23 Aligned_cols=81 Identities=12% Similarity=0.023 Sum_probs=45.6
Q ss_pred CcchHHHHHHHHhcCCchHHHHHHHHHHh---ccCCcHHHHHHHHHHhhcCC----chhHHHHHHHHHhccCc-chHHHH
Q 035556 96 DRHASLFLMRCKKSGNPEALYRQGMHDYF---SLGLTNSGFRLLKRAADKKH----PEATYVYTIIMLLCCGS-QFKKQG 167 (261)
Q Consensus 96 ~~ka~~FL~rCleaGNpeA~Y~~Gm~~~~---~~~~~~~Gl~lL~~AA~~G~----~~A~Y~lgmL~l~~~G~-e~~~~a 167 (261)
..++..++.++++.|+++|+|.+|.+.+. ..++.++|+.++.+|+..|+ +.|.|.+|+++.+|.|. .+.++|
T Consensus 69 ~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 69 YPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 44555556666666666666666655443 23444566666666666555 56666666666655555 245666
Q ss_pred HHHHHHhhc
Q 035556 168 FELLSSLKS 176 (261)
Q Consensus 168 ~~~f~~~~~ 176 (261)
+++|.++..
T Consensus 149 ~~~~~~A~~ 157 (212)
T 3rjv_A 149 SEYFKGSSS 157 (212)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665554
No 4
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.33 E-value=1.6e-06 Score=72.68 Aligned_cols=84 Identities=11% Similarity=0.064 Sum_probs=70.7
Q ss_pred CCcchHHHHHHHHhcCCchHHHHHHHHHHhc--cCCcHHHHHHHHHHhhcCCchhHHHHHHHHHhccCc-chHHHHHHHH
Q 035556 95 TDRHASLFLMRCKKSGNPEALYRQGMHDYFS--LGLTNSGFRLLKRAADKKHPEATYVYTIIMLLCCGS-QFKKQGFELL 171 (261)
Q Consensus 95 ~~~ka~~FL~rCleaGNpeA~Y~~Gm~~~~~--~~~~~~Gl~lL~~AA~~G~~~A~Y~lgmL~l~~~G~-e~~~~a~~~f 171 (261)
+...+..++.++++.||++|+|.+|++.+.. +.+.++|+.++.+|++.|++.|.|++|.++.+|.|. .+.++|+++|
T Consensus 33 ~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 112 (212)
T 3rjv_A 33 DYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLL 112 (212)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHH
Confidence 4568889999999999999999999986641 117799999999999999999999999999987775 5689999999
Q ss_pred HHhhccc
Q 035556 172 SSLKSTY 178 (261)
Q Consensus 172 ~~~~~t~ 178 (261)
.++....
T Consensus 113 ~~A~~~~ 119 (212)
T 3rjv_A 113 QDAARDS 119 (212)
T ss_dssp HHHTSST
T ss_pred HHHHHcC
Confidence 9987543
No 5
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.10 E-value=7.3e-06 Score=76.83 Aligned_cols=80 Identities=14% Similarity=0.108 Sum_probs=52.7
Q ss_pred CCcchHHHHHHHHhcCCchHHHHHHHHHH--hccCCcHHHHHHHHHHhhcCCchhHHHHHHHHHhccCc-chHHHHHHHH
Q 035556 95 TDRHASLFLMRCKKSGNPEALYRQGMHDY--FSLGLTNSGFRLLKRAADKKHPEATYVYTIIMLLCCGS-QFKKQGFELL 171 (261)
Q Consensus 95 ~~~ka~~FL~rCleaGNpeA~Y~~Gm~~~--~~~~~~~~Gl~lL~~AA~~G~~~A~Y~lgmL~l~~~G~-e~~~~a~~~f 171 (261)
+..++..++.+++ .|||+|+|.+|.+.+ ...++.++|+.++.+|+..|++.|.|++|.++.+|.|. .+.++|+++|
T Consensus 232 d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHF 310 (452)
T ss_dssp CHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 3455666677766 677777777776644 45556667777777777777777777777777666554 3466677777
Q ss_pred HHhh
Q 035556 172 SSLK 175 (261)
Q Consensus 172 ~~~~ 175 (261)
.++.
T Consensus 311 ~~Aa 314 (452)
T 3e4b_A 311 EKAV 314 (452)
T ss_dssp HTTT
T ss_pred HHHh
Confidence 6665
No 6
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.07 E-value=1.7e-06 Score=58.96 Aligned_cols=47 Identities=28% Similarity=0.507 Sum_probs=39.2
Q ss_pred CCCCCCCChHHHHHHHHHhcccChhhhHHHHHhcHHHHHhhcCHHHHHhc
Q 035556 34 GTSIESLPHALLTEVMAQVASTSLVDLSRLKLSCKYFLQAADDDFVFEHA 83 (261)
Q Consensus 34 ~~~~~~LPdDLlv~I~arVa~~S~~Dl~~l~ltcK~f~~l~~~~~Vl~~~ 83 (261)
+..++.||+|++..|+..+. +.|+..+.++||++++++.++.+.+.+
T Consensus 6 ~~~~~~LP~eil~~I~~~L~---~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLC---LPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSC---GGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred CCCHHHCCHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 45788999999999999997 899999999999999999999887764
No 7
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.04 E-value=8.6e-06 Score=76.34 Aligned_cols=81 Identities=12% Similarity=0.050 Sum_probs=64.6
Q ss_pred CCcchHHHHHHHHhcCCchHHHHHHHHHHhc---cCCcHHHHHHHHHHhhcCCchhHHHHHHHHHhccCc-chHHHHHHH
Q 035556 95 TDRHASLFLMRCKKSGNPEALYRQGMHDYFS---LGLTNSGFRLLKRAADKKHPEATYVYTIIMLLCCGS-QFKKQGFEL 170 (261)
Q Consensus 95 ~~~ka~~FL~rCleaGNpeA~Y~~Gm~~~~~---~~~~~~Gl~lL~~AA~~G~~~A~Y~lgmL~l~~~G~-e~~~~a~~~ 170 (261)
+..++..++.+++ .|+++|+|.+|.+...+ .+|..+|+.++.+|+..|++.|.|.+|.++.+|.|. .+..+|+.|
T Consensus 302 d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 380 (452)
T 3e4b_A 302 DAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVF 380 (452)
T ss_dssp CHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred CHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 5567778888888 78888888888766643 447788889999999888999999999988888775 458888888
Q ss_pred HHHhhc
Q 035556 171 LSSLKS 176 (261)
Q Consensus 171 f~~~~~ 176 (261)
|..+..
T Consensus 381 ~~~A~~ 386 (452)
T 3e4b_A 381 SQLAKA 386 (452)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 888763
No 8
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.93 E-value=2.9e-05 Score=72.29 Aligned_cols=83 Identities=12% Similarity=0.008 Sum_probs=53.1
Q ss_pred CCCcchHHHHHHHHhcCCchHHHHHHHHHHhc---cCCcHHHHHHHHHHhhcCCchhHHHHHHHHHhccCc-chHHHHHH
Q 035556 94 MTDRHASLFLMRCKKSGNPEALYRQGMHDYFS---LGLTNSGFRLLKRAADKKHPEATYVYTIIMLLCCGS-QFKKQGFE 169 (261)
Q Consensus 94 ~~~~ka~~FL~rCleaGNpeA~Y~~Gm~~~~~---~~~~~~Gl~lL~~AA~~G~~~A~Y~lgmL~l~~~G~-e~~~~a~~ 169 (261)
.+..++..++.++++.|+++|+|.+|.+.... .++.++|+.++.+|+..|++.|.|.+|.++.+|.|. .+.++|++
T Consensus 93 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 93 QDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 34556666677777777777777766655532 445566777777777777777777777776665554 34666777
Q ss_pred HHHHhhc
Q 035556 170 LLSSLKS 176 (261)
Q Consensus 170 ~f~~~~~ 176 (261)
+|.++.+
T Consensus 173 ~~~~a~~ 179 (490)
T 2xm6_A 173 WYSKAAE 179 (490)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766653
No 9
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.86 E-value=4.5e-05 Score=70.97 Aligned_cols=79 Identities=6% Similarity=-0.060 Sum_probs=37.5
Q ss_pred cchHHHHHHHHhcCCchHHHHHHHHHHhc---cCCcHHHHHHHHHHhhcCCchhHHHHHHHHHhccCc-chHHHHHHHHH
Q 035556 97 RHASLFLMRCKKSGNPEALYRQGMHDYFS---LGLTNSGFRLLKRAADKKHPEATYVYTIIMLLCCGS-QFKKQGFELLS 172 (261)
Q Consensus 97 ~ka~~FL~rCleaGNpeA~Y~~Gm~~~~~---~~~~~~Gl~lL~~AA~~G~~~A~Y~lgmL~l~~~G~-e~~~~a~~~f~ 172 (261)
..+..++.++++.|+++|+|.+|.+.... .++.++|+.++.+|+..|++.|.|.+|.++.+|.|. .+.++|+++|.
T Consensus 132 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 211 (490)
T 2xm6_A 132 AESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYR 211 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence 34444555555555555555555444321 334445555555555555555555555555544433 23444555555
Q ss_pred Hhh
Q 035556 173 SLK 175 (261)
Q Consensus 173 ~~~ 175 (261)
++.
T Consensus 212 ~a~ 214 (490)
T 2xm6_A 212 KSA 214 (490)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 10
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.56 E-value=0.00024 Score=59.97 Aligned_cols=80 Identities=10% Similarity=-0.014 Sum_probs=41.7
Q ss_pred CcchHHHHHHHHhcCCchHHHHHHHHHHhc---cCCcHHHHHHHHHHhhcCCchhHHHHHHHHHhccCc-chHHHHHHHH
Q 035556 96 DRHASLFLMRCKKSGNPEALYRQGMHDYFS---LGLTNSGFRLLKRAADKKHPEATYVYTIIMLLCCGS-QFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rCleaGNpeA~Y~~Gm~~~~~---~~~~~~Gl~lL~~AA~~G~~~A~Y~lgmL~l~~~G~-e~~~~a~~~f 171 (261)
...+..++.++++.+++++++..|...... .++.++|+.++.+|+..+++.|.|.+|.++..|.|. .+.++|+++|
T Consensus 130 ~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~ 209 (273)
T 1ouv_A 130 FKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARY 209 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 445555555555555555555555554431 444455555555555555555555555555544332 2345555555
Q ss_pred HHhh
Q 035556 172 SSLK 175 (261)
Q Consensus 172 ~~~~ 175 (261)
.++.
T Consensus 210 ~~a~ 213 (273)
T 1ouv_A 210 SKAC 213 (273)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 11
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.54 E-value=0.00035 Score=58.97 Aligned_cols=83 Identities=8% Similarity=-0.029 Sum_probs=54.5
Q ss_pred CCcchHHHHHHHHhcCCchHHHHHHHHHHhc---cCCcHHHHHHHHHHhhcCCchhHHHHHHHHHhccCc-chHHHHHHH
Q 035556 95 TDRHASLFLMRCKKSGNPEALYRQGMHDYFS---LGLTNSGFRLLKRAADKKHPEATYVYTIIMLLCCGS-QFKKQGFEL 170 (261)
Q Consensus 95 ~~~ka~~FL~rCleaGNpeA~Y~~Gm~~~~~---~~~~~~Gl~lL~~AA~~G~~~A~Y~lgmL~l~~~G~-e~~~~a~~~ 170 (261)
+...+..++.++++.+++++++..|...... .++.++|+.++.+|+..+++.|.+.+|.++.++.|. .+.++|+++
T Consensus 93 ~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~ 172 (273)
T 1ouv_A 93 NTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALAS 172 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 3456666777777777777777777665542 455577777777777777777777777777755443 346677777
Q ss_pred HHHhhcc
Q 035556 171 LSSLKST 177 (261)
Q Consensus 171 f~~~~~t 177 (261)
|.++.+.
T Consensus 173 ~~~a~~~ 179 (273)
T 1ouv_A 173 YDKACDL 179 (273)
T ss_dssp HHHHHHT
T ss_pred HHHHHHC
Confidence 7766643
No 12
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.12 E-value=0.00028 Score=64.89 Aligned_cols=49 Identities=20% Similarity=0.320 Sum_probs=44.3
Q ss_pred CCCCCCCChHHHHHHHHHhcccChhhhH-HHHHhcHHHHHhhcCHHHHHhcCc
Q 035556 34 GTSIESLPHALLTEVMAQVASTSLVDLS-RLKLSCKYFLQAADDDFVFEHASL 85 (261)
Q Consensus 34 ~~~~~~LPdDLlv~I~arVa~~S~~Dl~-~l~ltcK~f~~l~~~~~Vl~~~sl 85 (261)
...++.||+|||++|+.++. +.+|. .+.++||++++++.+|.+.+....
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp---~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~ 97 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELP---ATELVQACRLVCLRWKELVDGAPLWLLKCQ 97 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSC---HHHHHHTGGGTCHHHHHHHTSHHHHHHHHH
T ss_pred ccChhhCCHHHHHHHHHcCC---HHHHHHHHHHHhHHHHHHhcChHHHHHHhh
Confidence 56889999999999999998 78998 999999999999999998876544
No 13
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.47 E-value=0.0013 Score=60.96 Aligned_cols=52 Identities=15% Similarity=0.300 Sum_probs=47.2
Q ss_pred CCCCCCCChHHHHHHHHHhcccChhhhHHHHHhcHHHHHhhcCHHHHHhcCcccc
Q 035556 34 GTSIESLPHALLTEVMAQVASTSLVDLSRLKLSCKYFLQAADDDFVFEHASLDKF 88 (261)
Q Consensus 34 ~~~~~~LPdDLlv~I~arVa~~S~~Dl~~l~ltcK~f~~l~~~~~Vl~~~sl~~~ 88 (261)
+..|+.||+|++..|++-+. +.||..+.+|||+++.++.|+...+......+
T Consensus 2 ~~~l~~LP~ei~l~IlsfL~---p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~ 53 (312)
T 3l2o_B 2 ASTLTRLPIDVQLYILSFLS---PHDLCQLGSTNHYWNETVRDPILWRYFLLRDL 53 (312)
T ss_dssp CCHHHHSCHHHHHHHHHTSC---HHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSG
T ss_pred cchhHhCCHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhccchHHHHHHhccC
Confidence 34688999999999999998 99999999999999999999999998877554
No 14
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.25 E-value=0.0093 Score=53.89 Aligned_cols=50 Identities=22% Similarity=0.366 Sum_probs=45.2
Q ss_pred CCCCCCCCChHHHHHHHHHhcccChhhhHHHHHhcHHHHHhhcCHHHHHhcCc
Q 035556 33 LGTSIESLPHALLTEVMAQVASTSLVDLSRLKLSCKYFLQAADDDFVFEHASL 85 (261)
Q Consensus 33 ~~~~~~~LPdDLlv~I~arVa~~S~~Dl~~l~ltcK~f~~l~~~~~Vl~~~sl 85 (261)
..++++.||++|+..|+..+. +.||..+.++||+++.++.++.+.+..-.
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~---~~~l~~~~~v~~~~~~~~~~~~~w~~~~~ 64 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLE---PKDLLQAAQTCRYWRILAEDNLLWREKCK 64 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSC---HHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred cCChhHHCCHHHHHHHHHhCC---HHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence 368899999999999999996 99999999999999999999988887654
No 15
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=94.96 E-value=0.0048 Score=54.15 Aligned_cols=50 Identities=28% Similarity=0.507 Sum_probs=43.0
Q ss_pred CCCCCCCChHHHHHHHHHhcccChhhhHHHHHhcHHHHHhhcCHHHHHhcCcc
Q 035556 34 GTSIESLPHALLTEVMAQVASTSLVDLSRLKLSCKYFLQAADDDFVFEHASLD 86 (261)
Q Consensus 34 ~~~~~~LPdDLlv~I~arVa~~S~~Dl~~l~ltcK~f~~l~~~~~Vl~~~sl~ 86 (261)
...++.||||++..|+..+. ..|+..+.++||++++++.+|..++.+.+.
T Consensus 6 ~~~~~~LP~eil~~If~~L~---~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~ 55 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLC---LPELLKVSGVCKRWYRLASDESLWQTLDLT 55 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSC---HHHHHHTTSSCHHHHHHHTCSTTSSEEECT
T ss_pred cCChhhCCHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHhcCchhheeeccc
Confidence 35688999999999999997 779999999999999999888777766654
No 16
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=94.95 E-value=0.0086 Score=54.06 Aligned_cols=49 Identities=10% Similarity=0.143 Sum_probs=44.6
Q ss_pred CCCCCCCChHHHHHHHHHhcccChhhhHHHHHhcHHHHHhhcC-HHHHHhcCc
Q 035556 34 GTSIESLPHALLTEVMAQVASTSLVDLSRLKLSCKYFLQAADD-DFVFEHASL 85 (261)
Q Consensus 34 ~~~~~~LPdDLlv~I~arVa~~S~~Dl~~l~ltcK~f~~l~~~-~~Vl~~~sl 85 (261)
.+++..||++|+..|+.-+. +.||..+.++||+++.++.+ +.+.+.+.+
T Consensus 12 ~d~~~~lp~~~~~~i~~~l~---~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~ 61 (464)
T 3v7d_B 12 RDLITSLPFEISLKIFNYLQ---FEDIINSLGVSQNWNKIIRKSTSLWKKLLI 61 (464)
T ss_dssp CCHHHHSCHHHHHHHHTTSC---HHHHHHHHTTCHHHHHHHTTCHHHHHHHHH
T ss_pred cCChHHCCHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 47888999999999999996 89999999999999999998 888887665
No 17
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.89 E-value=0.25 Score=36.60 Aligned_cols=66 Identities=12% Similarity=-0.002 Sum_probs=53.8
Q ss_pred CCchHHHHHHHHHHhccCC--cHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHHHhhccc
Q 035556 110 GNPEALYRQGMHDYFSLGL--TNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLSSLKSTY 178 (261)
Q Consensus 110 GNpeA~Y~~Gm~~~~~~~~--~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~~t~ 178 (261)
.||++.+..|..+++..+. .+++..+|.+|.. +.++.|.+.+|.+++ -.|. .++|++++.++....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~-~~g~--y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHF-ISFR--FQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHH-HcCC--HHHHHHHHHHHHhhC
Confidence 6899999999999876664 5899999999654 668999999999999 4443 678999999987433
No 18
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=93.53 E-value=0.014 Score=52.84 Aligned_cols=50 Identities=16% Similarity=0.338 Sum_probs=43.4
Q ss_pred CCCCCCCChH----HHHHHHHHhcccChhhhHHHHHhcHHHHHhhcCHHHHHhcCcc
Q 035556 34 GTSIESLPHA----LLTEVMAQVASTSLVDLSRLKLSCKYFLQAADDDFVFEHASLD 86 (261)
Q Consensus 34 ~~~~~~LPdD----Llv~I~arVa~~S~~Dl~~l~ltcK~f~~l~~~~~Vl~~~sl~ 86 (261)
.++|..||++ |+..|++.+- +.||..+.++||+++.++.++.+.+.+-..
T Consensus 8 ~d~~~~lp~e~~~~~~~~i~~~l~---~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~ 61 (435)
T 1p22_A 8 RDFITALPARGLDHIAENILSYLD---AKSLCAAELVCKEWYRVTSDGMLWKKLIER 61 (435)
T ss_dssp CCHHHHTGGGTCHHHHHHHHTTCC---HHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred cChHHHCCcchHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcChHHHHHHHHh
Confidence 4788899999 8888888777 899999999999999999999888876443
No 19
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=93.15 E-value=0.73 Score=36.65 Aligned_cols=89 Identities=10% Similarity=-0.087 Sum_probs=65.5
Q ss_pred CcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
...+...+.++++. .|+++.+.+|... ...++-++|+..+.+|.. +.++.|.|++|.+++ -.|. .++|++.|
T Consensus 52 ~~eA~~~~~~al~~~P~~~~~~~~lg~~~-~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~-~lg~--~~eA~~~~ 127 (151)
T 3gyz_A 52 IEEAEVFFRFLCIYDFYNVDYIMGLAAIY-QIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL-RLKA--PLKAKECF 127 (151)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH-HTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcCC--HHHHHHHH
Confidence 45678888888875 4677777777654 455667999999999865 668999999999999 5554 67899999
Q ss_pred HHhhcccchHHHHHHHH
Q 035556 172 SSLKSTYGIRECRTKIR 188 (261)
Q Consensus 172 ~~~~~t~~~~ecr~ki~ 188 (261)
.++..-....+-+++.+
T Consensus 128 ~~al~l~~~~~~~~~A~ 144 (151)
T 3gyz_A 128 ELVIQHSNDEKLKIKAQ 144 (151)
T ss_dssp HHHHHHCCCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHH
Confidence 99885443334444444
No 20
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=92.86 E-value=0.45 Score=34.24 Aligned_cols=63 Identities=6% Similarity=0.061 Sum_probs=49.5
Q ss_pred cCCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHHHhh
Q 035556 109 SGNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLSSLK 175 (261)
Q Consensus 109 aGNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~ 175 (261)
-.|+++.|.+|... +..++.++|+..+.+|.. +.++.|.|.+|.++. -.|. .++|++.|.++.
T Consensus 4 p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~--~~~A~~~~~~al 68 (100)
T 3ma5_A 4 PEDPFTRYALAQEH-LKHDNASRALALFEELVETDPDYVGTYYHLGKLYE-RLDR--TDDAIDTYAQGI 68 (100)
T ss_dssp -CCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTC--HHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCC--HHHHHHHHHHHH
Confidence 46889999999865 556777999999999876 457889999999999 4443 567778888776
No 21
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=92.66 E-value=0.32 Score=35.68 Aligned_cols=77 Identities=21% Similarity=0.283 Sum_probs=58.0
Q ss_pred CcchHHHHHHHHhcC-----CchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHH
Q 035556 96 DRHASLFLMRCKKSG-----NPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGF 168 (261)
Q Consensus 96 ~~ka~~FL~rCleaG-----NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~ 168 (261)
...+..++.++++.+ ++++.+.+|... +..++-++|+..+.+|.. +.++.+.+.+|++++ -.|. .++|+
T Consensus 6 ~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~--~~~A~ 81 (117)
T 3k9i_A 6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTF-RTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY-NLGR--YEQGV 81 (117)
T ss_dssp -CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTC--HHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HcCC--HHHHH
Confidence 456788999999864 346677777654 456677999999999876 557899999999999 4443 56788
Q ss_pred HHHHHhhc
Q 035556 169 ELLSSLKS 176 (261)
Q Consensus 169 ~~f~~~~~ 176 (261)
++|.++..
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888763
No 22
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=92.17 E-value=0.5 Score=35.41 Aligned_cols=77 Identities=12% Similarity=-0.036 Sum_probs=58.0
Q ss_pred CcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
...+...+.++++. .|+++.|.+|+..+ ..++.++|+..+.+|.. +.++.|.+.+|+++. -.| ..++|++.|
T Consensus 33 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~-~~g--~~~~A~~~~ 108 (121)
T 1hxi_A 33 LAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT-NEH--NANAALASL 108 (121)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcC--CHHHHHHHH
Confidence 45667777777754 57889999998755 45666899999999766 457889999999998 333 267788888
Q ss_pred HHhhc
Q 035556 172 SSLKS 176 (261)
Q Consensus 172 ~~~~~ 176 (261)
.++..
T Consensus 109 ~~al~ 113 (121)
T 1hxi_A 109 RAWLL 113 (121)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 87763
No 23
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=91.92 E-value=0.67 Score=35.86 Aligned_cols=78 Identities=12% Similarity=0.055 Sum_probs=60.6
Q ss_pred CcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCc--HHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHH
Q 035556 96 DRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLT--NSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFE 169 (261)
Q Consensus 96 ~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~--~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~ 169 (261)
...+...+.++++. .|+++.+..|..+++..++. ++|+..+.+|.. +.+..+.+.+|.+++ -.|. .++|++
T Consensus 60 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~--~~~A~~ 136 (177)
T 2e2e_A 60 YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAF-MQAN--YAQAIE 136 (177)
T ss_dssp HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-Hccc--HHHHHH
Confidence 45677777777653 57888888998877777776 999999999865 456889999999999 4443 577888
Q ss_pred HHHHhhc
Q 035556 170 LLSSLKS 176 (261)
Q Consensus 170 ~f~~~~~ 176 (261)
+|.++..
T Consensus 137 ~~~~al~ 143 (177)
T 2e2e_A 137 LWQKVMD 143 (177)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8888874
No 24
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=91.79 E-value=1.9 Score=30.95 Aligned_cols=77 Identities=12% Similarity=0.099 Sum_probs=56.8
Q ss_pred CcchHHHHHHHHhc--CCc---hHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCC---chhHHHHHHHHHhccCcchHH
Q 035556 96 DRHASLFLMRCKKS--GNP---EALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKH---PEATYVYTIIMLLCCGSQFKK 165 (261)
Q Consensus 96 ~~ka~~FL~rClea--GNp---eA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~---~~A~Y~lgmL~l~~~G~e~~~ 165 (261)
...+...+...++. +++ ++.|..|... +..++-++|+..+.++.. +.+ +.|.|.+|.+++ -.|. .+
T Consensus 18 ~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~-~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~-~~g~--~~ 93 (129)
T 2xev_A 18 YDDASQLFLSFLELYPNGVYTPNALYWLGESY-YATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY-GEGK--NT 93 (129)
T ss_dssp HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTC--HH
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH-HcCC--HH
Confidence 35666777777763 445 6888888754 566777999999999876 345 778999999999 5543 56
Q ss_pred HHHHHHHHhhc
Q 035556 166 QGFELLSSLKS 176 (261)
Q Consensus 166 ~a~~~f~~~~~ 176 (261)
+|+++|..+..
T Consensus 94 ~A~~~~~~~~~ 104 (129)
T 2xev_A 94 EAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78888888763
No 25
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=91.65 E-value=1.6 Score=31.01 Aligned_cols=77 Identities=4% Similarity=-0.079 Sum_probs=56.7
Q ss_pred CcchHHHHHHHHhcC--CchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKSG--NPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rCleaG--NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
...+...+.++++.. ++++.+..|... ...++.++|+..+.+|.. +.++.+.+.+|.+++ -.|. .++|+++|
T Consensus 32 ~~~A~~~~~~al~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~--~~~A~~~~ 107 (133)
T 2lni_A 32 YPQAMKHYTEAIKRNPKDAKLYSNRAACY-TKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE-AMKD--YTKAMDVY 107 (133)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHH-TTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHH-HHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HHhh--HHHHHHHH
Confidence 456777777777653 567777777654 556677999999999876 446789999999998 4443 56788888
Q ss_pred HHhhc
Q 035556 172 SSLKS 176 (261)
Q Consensus 172 ~~~~~ 176 (261)
.++..
T Consensus 108 ~~~~~ 112 (133)
T 2lni_A 108 QKALD 112 (133)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 26
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=90.31 E-value=1.8 Score=32.57 Aligned_cols=76 Identities=14% Similarity=0.038 Sum_probs=57.2
Q ss_pred CcchHHHHHHHHhcC--CchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKSG--NPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rCleaG--NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
...+...+.+++... |+++.+..|... ...++.++|+..+.+|.. +.++.+.|.+|.+++ ..|. .++|+++|
T Consensus 34 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~--~~~A~~~~ 109 (142)
T 2xcb_A 34 WDDAQKIFQALCMLDHYDARYFLGLGACR-QSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL-QLGD--LDGAESGF 109 (142)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH-HTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HcCC--HHHHHHHH
Confidence 456777788777644 667777777754 456677999999999875 567899999999999 5553 56788888
Q ss_pred HHhh
Q 035556 172 SSLK 175 (261)
Q Consensus 172 ~~~~ 175 (261)
.++.
T Consensus 110 ~~al 113 (142)
T 2xcb_A 110 YSAR 113 (142)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 27
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=89.67 E-value=2 Score=33.17 Aligned_cols=77 Identities=10% Similarity=-0.003 Sum_probs=58.4
Q ss_pred CcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
...+...+.++++. .|+++.+..|... ...++.++|+..+.+|.. +.++.+.|.+|.+++ ..|. .++|++.|
T Consensus 37 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~-~~g~--~~~A~~~~ 112 (148)
T 2vgx_A 37 YEDAHXVFQALCVLDHYDSRFFLGLGACR-QAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL-QXGE--LAEAESGL 112 (148)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTC--HHHHHHHH
T ss_pred hHHHHHHHHHHHHcCcccHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH-HcCC--HHHHHHHH
Confidence 45677778777654 5677778777754 456677999999999865 568999999999999 5554 56788888
Q ss_pred HHhhc
Q 035556 172 SSLKS 176 (261)
Q Consensus 172 ~~~~~ 176 (261)
.++..
T Consensus 113 ~~al~ 117 (148)
T 2vgx_A 113 FLAQE 117 (148)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88763
No 28
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=89.49 E-value=3.3 Score=31.02 Aligned_cols=77 Identities=6% Similarity=-0.130 Sum_probs=59.6
Q ss_pred CcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
...+...+.++++. .|+++.+..|... +..++.++|+..+.+|.. +.++.|.|.+|.+++ ..|. .++|++.|
T Consensus 29 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~--~~~A~~~~ 104 (126)
T 4gco_A 29 YPTAMRHYNEAVKRDPENAILYSNRAACL-TKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV-AMRE--WSKAQRAY 104 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHhhHH-HhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH-HCCC--HHHHHHHH
Confidence 45677888888764 4677778888765 456677899999999876 567899999999999 5553 67899999
Q ss_pred HHhhc
Q 035556 172 SSLKS 176 (261)
Q Consensus 172 ~~~~~ 176 (261)
.++..
T Consensus 105 ~~al~ 109 (126)
T 4gco_A 105 EDALQ 109 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98874
No 29
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=89.27 E-value=0.89 Score=36.14 Aligned_cols=62 Identities=8% Similarity=-0.027 Sum_probs=50.3
Q ss_pred CCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHHHhh
Q 035556 110 GNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLSSLK 175 (261)
Q Consensus 110 GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~ 175 (261)
.|+++.|..|+.. +..++-++|+..+.+|.. +.++.+.+++|.++. -.|. .++|++.|.++.
T Consensus 34 ~~~~~~~~lg~~~-~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~--~~~Ai~~~~~al 97 (151)
T 3gyz_A 34 DMMDDIYSYAYDF-YNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ-IKEQ--FQQAADLYAVAF 97 (151)
T ss_dssp HHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHcc--HHHHHHHHHHHH
Confidence 4667889999754 667777999999999775 567999999999999 5553 678999999887
No 30
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=88.99 E-value=0.2 Score=47.12 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=29.0
Q ss_pred CCCCCCChHHHHHHHHHhcccChhhhHHHHHhcHHHHHh
Q 035556 35 TSIESLPHALLTEVMAQVASTSLVDLSRLKLSCKYFLQA 73 (261)
Q Consensus 35 ~~~~~LPdDLlv~I~arVa~~S~~Dl~~l~ltcK~f~~l 73 (261)
+.++.||||++..|+..+.. ..|+..+.++||+++.+
T Consensus 4 d~~~~LPdevL~~If~~L~~--~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQL--DKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ------CHHHHHHHHHTCCC--HHHHHHHHTSCHHHHHH
T ss_pred cchhhCCHHHHHHHHhhcCC--chhHHHHHHHHHHHHHh
Confidence 67889999999999999973 68999999999999988
No 31
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=88.64 E-value=3.4 Score=29.55 Aligned_cols=74 Identities=12% Similarity=-0.071 Sum_probs=53.7
Q ss_pred chHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHHH
Q 035556 98 HASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLSS 173 (261)
Q Consensus 98 ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~ 173 (261)
.+...+.++++. .++.+.|..|... +..++.++|+..+.+|.. +.+..+.|.+|.++. ..|. .++|+++|.+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~--~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTY-AEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ-GQGD--RAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHH-HHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HcCC--HHHHHHHHHH
Confidence 355666666653 4677778777654 456677999999999875 456889999999999 4443 5677777877
Q ss_pred hh
Q 035556 174 LK 175 (261)
Q Consensus 174 ~~ 175 (261)
+.
T Consensus 79 al 80 (115)
T 2kat_A 79 GL 80 (115)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 32
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.04 E-value=2.8 Score=30.38 Aligned_cols=77 Identities=12% Similarity=-0.076 Sum_probs=53.9
Q ss_pred CcchHHHHHHHHhcCC-----chHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHH
Q 035556 96 DRHASLFLMRCKKSGN-----PEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGF 168 (261)
Q Consensus 96 ~~ka~~FL~rCleaGN-----peA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~ 168 (261)
...+...+.++++... +.+.+..|.. ++..++.++++..+.+|.. +.++.+.|.+|.+++ -.|. .++|+
T Consensus 44 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~--~~~A~ 119 (148)
T 2dba_A 44 YGGALAAYTQALGLDATPQDQAVLHRNRAAC-HLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALE-KLGR--LDQAV 119 (148)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH-HHTC--HHHHH
T ss_pred HHHHHHHHHHHHHHcccchHHHHHHHHHHHH-HHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHH-HcCC--HHHHH
Confidence 3456667777776443 4455556654 3556777899999998765 346789999999999 4443 56788
Q ss_pred HHHHHhhc
Q 035556 169 ELLSSLKS 176 (261)
Q Consensus 169 ~~f~~~~~ 176 (261)
++|.++..
T Consensus 120 ~~~~~al~ 127 (148)
T 2dba_A 120 LDLQRCVS 127 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888864
No 33
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=87.41 E-value=3.8 Score=27.87 Aligned_cols=77 Identities=5% Similarity=-0.046 Sum_probs=53.7
Q ss_pred CcchHHHHHHHHhcC--CchHHHHHHHHHHhccCCcHHHHHHHHHHhhc--C--CchhHHHHHHHHHhcc-CcchHHHHH
Q 035556 96 DRHASLFLMRCKKSG--NPEALYRQGMHDYFSLGLTNSGFRLLKRAADK--K--HPEATYVYTIIMLLCC-GSQFKKQGF 168 (261)
Q Consensus 96 ~~ka~~FL~rCleaG--NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--G--~~~A~Y~lgmL~l~~~-G~e~~~~a~ 168 (261)
...+...+.++++.. ++++.+..|... +..++.++|+..+.+|... . +..+.+.+|.+++ -. |. .++|+
T Consensus 22 ~~~A~~~~~~a~~~~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~-~~~~~--~~~A~ 97 (112)
T 2kck_A 22 YTESIDLFEKAIQLDPEESKYWLMKGKAL-YNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR-YIEGK--EVEAE 97 (112)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT-TCSSC--SHHHH
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH-HHhCC--HHHHH
Confidence 345667777777643 566677777654 4456668999999988764 3 5678888898888 44 43 45788
Q ss_pred HHHHHhhc
Q 035556 169 ELLSSLKS 176 (261)
Q Consensus 169 ~~f~~~~~ 176 (261)
++|..+..
T Consensus 98 ~~~~~~~~ 105 (112)
T 2kck_A 98 IAEARAKL 105 (112)
T ss_dssp HHHHHHGG
T ss_pred HHHHHHhh
Confidence 88887764
No 34
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=87.37 E-value=3.9 Score=29.57 Aligned_cols=77 Identities=9% Similarity=-0.032 Sum_probs=57.2
Q ss_pred CcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
...+...+.++++. .|+++.+..|...+ ..++-++|+..+.+|.. +.++.+.|.+|.+++ ..|. .++|++.|
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~--~~~A~~~~ 95 (126)
T 3upv_A 20 WPNAVKAYTEMIKRAPEDARGYSNRAAALA-KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI-AVKE--YASALETL 95 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHhC--HHHHHHHH
Confidence 45677788887764 45677788887654 45667899999999776 456889999999999 5553 56788888
Q ss_pred HHhhc
Q 035556 172 SSLKS 176 (261)
Q Consensus 172 ~~~~~ 176 (261)
.++..
T Consensus 96 ~~al~ 100 (126)
T 3upv_A 96 DAART 100 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87763
No 35
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=87.29 E-value=3.3 Score=31.64 Aligned_cols=76 Identities=13% Similarity=-0.068 Sum_probs=57.5
Q ss_pred CcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
...+..++.++++. .|+++.+..|... +..++.++|+..+.+|.. +.+..+.|.+|.+++ -.|. .++|+++|
T Consensus 27 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~--~~~A~~~~ 102 (164)
T 3sz7_A 27 YSKAIDLYTQALSIAPANPIYLSNRAAAY-SASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF-DMAD--YKGAKEAY 102 (164)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcCHHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HccC--HHHHHHHH
Confidence 45677788887764 4677777887754 456677999999999865 457899999999999 5553 56788888
Q ss_pred HHhh
Q 035556 172 SSLK 175 (261)
Q Consensus 172 ~~~~ 175 (261)
.++.
T Consensus 103 ~~al 106 (164)
T 3sz7_A 103 EKGI 106 (164)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 36
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=86.86 E-value=4.3 Score=29.34 Aligned_cols=76 Identities=11% Similarity=-0.005 Sum_probs=55.8
Q ss_pred CcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
...+..++.++++. .++++.+..|...+ ..++.++|+..+.+|.. +.++.+.|.+|.+++ ..|. .++|++.|
T Consensus 25 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~--~~~A~~~~ 100 (137)
T 3q49_B 25 YPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQL-EMES--YDEAIANL 100 (137)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH-HHhh--HHHHHHHH
Confidence 35677777777664 45677777777644 56666899999998765 456889999999999 5553 56788888
Q ss_pred HHhh
Q 035556 172 SSLK 175 (261)
Q Consensus 172 ~~~~ 175 (261)
.++.
T Consensus 101 ~~a~ 104 (137)
T 3q49_B 101 QRAY 104 (137)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8776
No 37
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=86.19 E-value=1.7 Score=33.55 Aligned_cols=61 Identities=10% Similarity=0.075 Sum_probs=47.6
Q ss_pred CCcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHH
Q 035556 95 TDRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIML 156 (261)
Q Consensus 95 ~~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l 156 (261)
+...+..++.++++. .|+++.+..|...+ ..++.++|+..+.+|.. +.++.|.+.+|.+++
T Consensus 46 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 110 (150)
T 4ga2_A 46 EYDLAKKYICTYINVQERDPKAHRFLGLLYE-LEENTDKAVECYRRSVELNPTQKDLVLKIAELLC 110 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 456788888888765 57888888887654 45666889999988775 557889999999888
No 38
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=86.05 E-value=2.5 Score=28.27 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=44.0
Q ss_pred CchHHHHHHHHHHhccCCcHHHHHHHHHHhhc--CCchhHHHHHHHHHhccCcchHHHHHHHHHHhhc
Q 035556 111 NPEALYRQGMHDYFSLGLTNSGFRLLKRAADK--KHPEATYVYTIIMLLCCGSQFKKQGFELLSSLKS 176 (261)
Q Consensus 111 NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~~ 176 (261)
++++.+..|... +..++.++|+.++.+|... .++.+.+.+|.+++ -.|. .++|+++|.++..
T Consensus 8 ~~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~--~~~A~~~~~~a~~ 71 (91)
T 1na3_A 8 SAEAWYNLGNAY-YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGD--YDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH-HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHhh--HHHHHHHHHHHHh
Confidence 355667777654 4566778899988887653 46778889999888 4443 5678888887764
No 39
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=85.51 E-value=2.4 Score=29.40 Aligned_cols=62 Identities=15% Similarity=0.129 Sum_probs=47.4
Q ss_pred CchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHHHhhc
Q 035556 111 NPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLSSLKS 176 (261)
Q Consensus 111 NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~~ 176 (261)
++++.+.+|... +..++-++|+..+.+|.. +.++.+.+++|.+++ -.|. .++|++.|.++..
T Consensus 3 ~~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~--~~~A~~~~~~al~ 66 (111)
T 2l6j_A 3 QFEKQKEQGNSL-FKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALI-KLGE--YTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcC--HHHHHHHHHHHHH
Confidence 456777777654 456677899999998865 457889999999999 5443 6788899998874
No 40
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=85.44 E-value=5.6 Score=27.17 Aligned_cols=77 Identities=6% Similarity=-0.154 Sum_probs=56.4
Q ss_pred CcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhhc--CCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAADK--KHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
.+.+..++.++++. .++++.+..|... ...++.++|...+.+|... .++.+.+.+|.++. ..|. .++|+++|
T Consensus 20 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~--~~~A~~~~ 95 (118)
T 1elw_A 20 IDDALQCYSEAIKLDPHNHVLYSNRSAAY-AKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE-FLNR--FEEAKRTY 95 (118)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHH-HhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhh--HHHHHHHH
Confidence 45667777777665 4567777777654 4566778999999998763 46788999999998 4443 56788888
Q ss_pred HHhhc
Q 035556 172 SSLKS 176 (261)
Q Consensus 172 ~~~~~ 176 (261)
.++..
T Consensus 96 ~~~~~ 100 (118)
T 1elw_A 96 EEGLK 100 (118)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 88764
No 41
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=85.35 E-value=2.1 Score=33.64 Aligned_cols=76 Identities=9% Similarity=-0.013 Sum_probs=56.7
Q ss_pred CcchHHHHHHHHhcCCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHHH
Q 035556 96 DRHASLFLMRCKKSGNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLSS 173 (261)
Q Consensus 96 ~~ka~~FL~rCleaGNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~ 173 (261)
...+...+..+++ .++.+.+..|... +..++.++|+..+.+|.. +.++.+.+.+|.+++ ..|. .++|+++|.+
T Consensus 22 ~~~A~~~~~~a~~-~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~-~~~~--~~~A~~~~~~ 96 (213)
T 1hh8_A 22 WKGALDAFSAVQD-PHSRICFNIGCMY-TILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY-QTEK--YDLAIKDLKE 96 (213)
T ss_dssp HHHHHHHHHTSSS-CCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CChHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-Hccc--HHHHHHHHHH
Confidence 3456666666664 4788888888764 456777999999999875 457889999999999 5543 5678888887
Q ss_pred hhc
Q 035556 174 LKS 176 (261)
Q Consensus 174 ~~~ 176 (261)
+..
T Consensus 97 al~ 99 (213)
T 1hh8_A 97 ALI 99 (213)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=85.21 E-value=3.4 Score=33.60 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=57.6
Q ss_pred CcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhhc-CCchhHHHHHHHHHhccCcchHHHHHHHHH
Q 035556 96 DRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAADK-KHPEATYVYTIIMLLCCGSQFKKQGFELLS 172 (261)
Q Consensus 96 ~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~-G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~ 172 (261)
...+...+.++++. .++++.+..|... ...++.++|+..+.+|... .++.+.+++|.+++ ..|. .++|++.|+
T Consensus 100 ~~~A~~~~~~al~~~P~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~-~~g~--~~~A~~~~~ 175 (217)
T 2pl2_A 100 LEQALSVLKDAERVNPRYAPLHLQRGLVY-ALLGERDKAEASLKQALALEDTPEIRSALAELYL-SMGR--LDEALAQYA 175 (217)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHcCChHHHHHHHHHHHhcccchHHHHHHHHHHH-HcCC--HHHHHHHHH
Confidence 34567778888763 5677888888754 5566778999999987653 57889999999999 4443 567888888
Q ss_pred Hhhc
Q 035556 173 SLKS 176 (261)
Q Consensus 173 ~~~~ 176 (261)
++..
T Consensus 176 ~al~ 179 (217)
T 2pl2_A 176 KALE 179 (217)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 43
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=84.55 E-value=2.3 Score=29.04 Aligned_cols=64 Identities=13% Similarity=0.215 Sum_probs=48.8
Q ss_pred cCCchHHHHHHHHHHhccCCcHHHHHHHHHHhhc--CCchhHHHHHHHHHhccCcchHHHHHHHHHHhhc
Q 035556 109 SGNPEALYRQGMHDYFSLGLTNSGFRLLKRAADK--KHPEATYVYTIIMLLCCGSQFKKQGFELLSSLKS 176 (261)
Q Consensus 109 aGNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~~ 176 (261)
.+++++.+..|... +..++.++|+..+.+|... .+..+.+.+|.+++ ..|. .++|+++|.++..
T Consensus 3 p~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~-~~~~--~~~A~~~~~~a~~ 68 (112)
T 2kck_A 3 DQNPEEYYLEGVLQ-YDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALY-NLER--YEEAVDCYNYVIN 68 (112)
T ss_dssp CSSTTGGGGHHHHH-HSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTC--HHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HccC--HHHHHHHHHHHHH
Confidence 35777888888765 4566778999999998763 46788999999998 4443 6788888888874
No 44
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=84.49 E-value=6.4 Score=27.09 Aligned_cols=77 Identities=17% Similarity=0.178 Sum_probs=53.8
Q ss_pred CcchHHHHHHHHhcC--CchHHHHHHHHHHhccCCcHHHHHHHHHHhhc--CCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKSG--NPEALYRQGMHDYFSLGLTNSGFRLLKRAADK--KHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rCleaG--NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
...+..++.++++.. ++++.+..|... +..++.++|+.++.++... .++.+.+.+|.++. -.|. .++|+++|
T Consensus 25 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~--~~~A~~~~ 100 (125)
T 1na0_A 25 YDEAIEYYQKALELDPNNAEAWYNLGNAY-YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGD--YDEAIEYY 100 (125)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCcHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcC--HHHHHHHH
Confidence 445667777776643 456666666543 4556778999999988764 46778889999888 4443 56788888
Q ss_pred HHhhc
Q 035556 172 SSLKS 176 (261)
Q Consensus 172 ~~~~~ 176 (261)
.++..
T Consensus 101 ~~~~~ 105 (125)
T 1na0_A 101 QKALE 105 (125)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 45
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=84.35 E-value=2.8 Score=36.22 Aligned_cols=73 Identities=14% Similarity=0.018 Sum_probs=50.4
Q ss_pred CcchHHHHHHHHhc----CCchHHHHHHHHHHhccCCcHHHHHHHHHHhhcCCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKS----GNPEALYRQGMHDYFSLGLTNSGFRLLKRAADKKHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rClea----GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
.+.+..-+...+.. +|+++.+..|...+ ..++.++|+..+.+ +++..+.+.+|.+++ -.|. .++|++.|
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~-~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~-~~g~--~~~A~~~l 153 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYF-YDQNPDAALRTLHQ---GDSLECMAMTVQILL-KLDR--LDLARKEL 153 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHH-HTTCHHHHHHHHTT---CCSHHHHHHHHHHHH-HTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH-HCCCHHHHHHHHhC---CCCHHHHHHHHHHHH-HCCC--HHHHHHHH
Confidence 34566667766653 36777788777654 55666888888887 567888888888887 4443 45677777
Q ss_pred HHhh
Q 035556 172 SSLK 175 (261)
Q Consensus 172 ~~~~ 175 (261)
.++.
T Consensus 154 ~~~~ 157 (291)
T 3mkr_A 154 KKMQ 157 (291)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 46
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=84.08 E-value=3.1 Score=29.74 Aligned_cols=61 Identities=11% Similarity=0.058 Sum_probs=45.0
Q ss_pred chHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCc---hhHHHHHHHHHhccCcchHHHHHHHHHHhhc
Q 035556 112 PEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHP---EATYVYTIIMLLCCGSQFKKQGFELLSSLKS 176 (261)
Q Consensus 112 peA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~---~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~~ 176 (261)
+++.|..|...+ ..++-++|+..+.++.. +.++ .+.|.+|.+++ -.|. .++|+++|.++..
T Consensus 2 ~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~-~~~~--~~~A~~~~~~~~~ 67 (129)
T 2xev_A 2 ARTAYNVAFDAL-KNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYY-ATRN--FQLAEAQFRDLVS 67 (129)
T ss_dssp -CCHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHH-HTTC--HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH-Hhcc--HHHHHHHHHHHHH
Confidence 467788886544 56677999999999876 3455 69999999999 4443 5678888888763
No 47
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=83.97 E-value=3.4 Score=33.36 Aligned_cols=78 Identities=15% Similarity=0.077 Sum_probs=40.0
Q ss_pred CcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
.+.+...+.++++. .|+++.+..|...+ ..++.++|+..+.+|.. +.++.|.+++|.+++ -.|....+.+...|
T Consensus 70 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~~~~~~~~~~~~~ 147 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPNNVDCLEACAEMQV-CRGQEKDALRMYEKILQLEADNLAANIFLGNYYY-LTAEQEKKKLETDY 147 (208)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHhHHHHHHHHHHH
Confidence 34555666666553 34556666665433 34445666666666543 445666666666665 22222234444445
Q ss_pred HHhh
Q 035556 172 SSLK 175 (261)
Q Consensus 172 ~~~~ 175 (261)
..+.
T Consensus 148 ~~~~ 151 (208)
T 3urz_A 148 KKLS 151 (208)
T ss_dssp C---
T ss_pred HHHh
Confidence 4444
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=83.86 E-value=2.9 Score=33.96 Aligned_cols=45 Identities=27% Similarity=0.431 Sum_probs=20.1
Q ss_pred CchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHH
Q 035556 111 NPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIML 156 (261)
Q Consensus 111 NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l 156 (261)
|+++.+.+|... +..++.++|+..+.+|.. +.++.|.+.+|.+++
T Consensus 4 ~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 50 (217)
T 2pl2_A 4 AEQNPLRLGVQL-YALGRYDAALTLFERALKENPQDPEALYWLARTQL 50 (217)
T ss_dssp CCHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 444444444432 223333455555554432 234445555555554
No 49
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=83.84 E-value=5.6 Score=31.08 Aligned_cols=77 Identities=18% Similarity=0.103 Sum_probs=58.5
Q ss_pred CcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhhcC--Cc----------------hhHHHHHHHH
Q 035556 96 DRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAADKK--HP----------------EATYVYTIIM 155 (261)
Q Consensus 96 ~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~G--~~----------------~A~Y~lgmL~ 155 (261)
...+...+.++++. .++++.+..|... +..++.++|+..+.+|.... +. .+.|.+|.++
T Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~lg~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (213)
T 1hh8_A 53 MTEAEKAFTRSINRDKHLAVAYFQRGMLY-YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMY 131 (213)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHH-HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHH
Confidence 45677888888764 5677888888764 45677799999999988732 22 8899999999
Q ss_pred HhccCcchHHHHHHHHHHhhc
Q 035556 156 LLCCGSQFKKQGFELLSSLKS 176 (261)
Q Consensus 156 l~~~G~e~~~~a~~~f~~~~~ 176 (261)
+ ..|. .++|++.|.++..
T Consensus 132 ~-~~g~--~~~A~~~~~~al~ 149 (213)
T 1hh8_A 132 A-KKEE--WKKAEEQLALATS 149 (213)
T ss_dssp H-HTTC--HHHHHHHHHHHHT
T ss_pred H-HccC--HHHHHHHHHHHHH
Confidence 9 5553 6788888988874
No 50
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=83.74 E-value=2.4 Score=34.94 Aligned_cols=75 Identities=11% Similarity=0.007 Sum_probs=55.0
Q ss_pred hHHHHHHHHh--cCCchHHHHHHHHHHhcc--CCcHHHHHHHHHHhhcC----CchhHHHHHHHHHhccCcchHHHHHHH
Q 035556 99 ASLFLMRCKK--SGNPEALYRQGMHDYFSL--GLTNSGFRLLKRAADKK----HPEATYVYTIIMLLCCGSQFKKQGFEL 170 (261)
Q Consensus 99 a~~FL~rCle--aGNpeA~Y~~Gm~~~~~~--~~~~~Gl~lL~~AA~~G----~~~A~Y~lgmL~l~~~G~e~~~~a~~~ 170 (261)
.+.-+..-.+ .-++++.|..|+-++-.. .+..+|..+|....... +.++.|.+|+-++ -.|. ..+|.++
T Consensus 17 ~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~-kl~~--Y~~A~~y 93 (152)
T 1pc2_A 17 FEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKE--YEKALKY 93 (152)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH-HTSC--HHHHHHH
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH-HccC--HHHHHHH
Confidence 3334444444 346789999988877543 34479999999988765 5899999999998 5443 6788888
Q ss_pred HHHhhc
Q 035556 171 LSSLKS 176 (261)
Q Consensus 171 f~~~~~ 176 (261)
|..+..
T Consensus 94 ~~~lL~ 99 (152)
T 1pc2_A 94 VRGLLQ 99 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888874
No 51
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=83.44 E-value=4.1 Score=31.00 Aligned_cols=62 Identities=10% Similarity=-0.027 Sum_probs=47.0
Q ss_pred CCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHHHhh
Q 035556 110 GNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLSSLK 175 (261)
Q Consensus 110 GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~ 175 (261)
.++.+.+..|... +..++-+.|+..+.+|.. +.++.|.|.+|.+++ ..|. .++|++.|.++.
T Consensus 61 ~~~~~~~nla~~~-~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~-~~g~--~~~A~~~~~~al 124 (162)
T 3rkv_A 61 KNIPLYANMSQCY-LNIGDLHEAEETSSEVLKREETNEKALFRRAKARI-AAWK--LDEAEEDLKLLL 124 (162)
T ss_dssp THHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHH-HHhc--HHHHHHHHHHHH
Confidence 4446677777654 456677899999988765 567899999999999 5554 567888888886
No 52
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=83.33 E-value=1.9 Score=35.68 Aligned_cols=88 Identities=8% Similarity=-0.068 Sum_probs=60.2
Q ss_pred hHHHHHHHH--hcCCchHHHHHHHHHHhcc--C-------CcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccC-----
Q 035556 99 ASLFLMRCK--KSGNPEALYRQGMHDYFSL--G-------LTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCG----- 160 (261)
Q Consensus 99 a~~FL~rCl--eaGNpeA~Y~~Gm~~~~~~--~-------~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G----- 160 (261)
+...+.+.+ +-+++++.+..|..++-.. + ..++|+..+.+|.. +.++.|.|++|..|. ..|
T Consensus 21 A~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~-~lg~l~P~ 99 (158)
T 1zu2_A 21 IRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT-SFAFLTPD 99 (158)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHCCC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HhcccCcc
Confidence 444455544 3467889999999666221 1 23689999998866 457899999999999 332
Q ss_pred ----cchHHHHHHHHHHhhccc-chHHHHHHH
Q 035556 161 ----SQFKKQGFELLSSLKSTY-GIRECRTKI 187 (261)
Q Consensus 161 ----~e~~~~a~~~f~~~~~t~-~~~ecr~ki 187 (261)
.+..++|++.|.++..-. ....+++-+
T Consensus 100 ~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al 131 (158)
T 1zu2_A 100 ETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 135889999999998544 445555433
No 53
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=83.05 E-value=5.9 Score=29.51 Aligned_cols=78 Identities=8% Similarity=-0.075 Sum_probs=53.5
Q ss_pred CcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhhcC--Cc-------hhHHHHHHHHHhccCcchH
Q 035556 96 DRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAADKK--HP-------EATYVYTIIMLLCCGSQFK 164 (261)
Q Consensus 96 ~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~G--~~-------~A~Y~lgmL~l~~~G~e~~ 164 (261)
...+..++.++++- .|+++.+..|+.. +..++-++|+..+.+|..-. +. .|.+.+|.++. ..|. .
T Consensus 24 ~~~A~~~y~~Al~~~p~~~~~~~nlg~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~~~--~ 99 (127)
T 4gcn_A 24 FEKAHVHYDKAIELDPSNITFYNNKAAVY-FEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ-KQND--L 99 (127)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTC--H
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHhHHHHH-HHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH-HcCC--H
Confidence 45677888888764 4566667777654 55667789999999887532 22 36667777776 4443 6
Q ss_pred HHHHHHHHHhhcc
Q 035556 165 KQGFELLSSLKST 177 (261)
Q Consensus 165 ~~a~~~f~~~~~t 177 (261)
++|+++|.++...
T Consensus 100 ~~A~~~~~kal~~ 112 (127)
T 4gcn_A 100 SLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 7899999988743
No 54
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=83.01 E-value=9.1 Score=26.51 Aligned_cols=77 Identities=10% Similarity=-0.023 Sum_probs=54.8
Q ss_pred CcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
...+..++.++++. .++.+.+..|... +..++.++|+..+.+|.. +.++.+.+.+|.++. -.|. .++|+++|
T Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~A~~~~ 103 (131)
T 2vyi_A 28 FEAAVHFYGKAIELNPANAVYFCNRAAAY-SKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS-SLNK--HVEAVAYY 103 (131)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH-HhCC--HHHHHHHH
Confidence 34566777777654 3566667777654 456677899999998876 345788999999988 4443 56788888
Q ss_pred HHhhc
Q 035556 172 SSLKS 176 (261)
Q Consensus 172 ~~~~~ 176 (261)
.++..
T Consensus 104 ~~~~~ 108 (131)
T 2vyi_A 104 KKALE 108 (131)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88764
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=82.88 E-value=4.2 Score=31.23 Aligned_cols=77 Identities=13% Similarity=0.109 Sum_probs=56.2
Q ss_pred CcchHHHHHHHHh--cCCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKK--SGNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rCle--aGNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
...+...+.++.+ ..++++.+..|... ...++-++|+..+.+|.. +.++.+.+.+|.++. -.|. .++|++.|
T Consensus 89 ~~~a~~~~~~a~~~~~~~~~~~~~lg~~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~-~~g~--~~~A~~~~ 164 (184)
T 3vtx_A 89 KQAAIDALQRAIALNTVYADAYYKLGLVY-DSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYE-GKGL--RDEAVKYF 164 (184)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHH-HHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHH-HCCC--HHHHHHHH
Confidence 3455666666654 35677778887754 455666899999998765 557889999999999 5553 67889999
Q ss_pred HHhhc
Q 035556 172 SSLKS 176 (261)
Q Consensus 172 ~~~~~ 176 (261)
.++.+
T Consensus 165 ~~al~ 169 (184)
T 3vtx_A 165 KKALE 169 (184)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88874
No 56
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=82.61 E-value=5.9 Score=27.65 Aligned_cols=77 Identities=14% Similarity=-0.006 Sum_probs=55.1
Q ss_pred CcchHHHHHHHHhcC--CchHHHHHHHHHHhccCCcHHHHHHHHHHhhcC--C-------chhHHHHHHHHHhccCcchH
Q 035556 96 DRHASLFLMRCKKSG--NPEALYRQGMHDYFSLGLTNSGFRLLKRAADKK--H-------PEATYVYTIIMLLCCGSQFK 164 (261)
Q Consensus 96 ~~ka~~FL~rCleaG--NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~G--~-------~~A~Y~lgmL~l~~~G~e~~ 164 (261)
...+...+.++++.. ++.+.+..|... +..++.++|+..+.+|.... + ..+.|.+|.+++ -.|. .
T Consensus 20 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~--~ 95 (131)
T 1elr_A 20 FDTALKHYDKAKELDPTNMTYITNQAAVY-FEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF-KEEK--Y 95 (131)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH-HTTC--H
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHH-HHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH-Hhcc--H
Confidence 456777888877654 566677777654 45667789999999887643 2 678899999998 4443 5
Q ss_pred HHHHHHHHHhhc
Q 035556 165 KQGFELLSSLKS 176 (261)
Q Consensus 165 ~~a~~~f~~~~~ 176 (261)
++|+++|.++..
T Consensus 96 ~~A~~~~~~~~~ 107 (131)
T 1elr_A 96 KDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 678888888764
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=82.27 E-value=6.3 Score=30.41 Aligned_cols=15 Identities=7% Similarity=0.129 Sum_probs=7.0
Q ss_pred CCcHHHHHHHHHHhh
Q 035556 127 GLTNSGFRLLKRAAD 141 (261)
Q Consensus 127 ~~~~~Gl~lL~~AA~ 141 (261)
++.++|+..+.++..
T Consensus 91 ~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 91 NRPAESMAYFDKALA 105 (225)
T ss_dssp CCHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHc
Confidence 344445555444443
No 58
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=81.48 E-value=3.4 Score=31.81 Aligned_cols=69 Identities=9% Similarity=0.047 Sum_probs=50.1
Q ss_pred HHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHHHhh
Q 035556 103 LMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLSSLK 175 (261)
Q Consensus 103 L~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~ 175 (261)
+.++++. .++++.|..|... +..++-++|+..+.+|.. +.++.+.+.+|.++. -.|. .++|++.|.++.
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~--~~~A~~~~~~al 82 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQ-YQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ-AMGQ--YDLAIHSYSYGA 82 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHHHHHH
T ss_pred HHHHHcCCHhhHHHHHHHHHHH-HHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHH-HHhh--HHHHHHHHHHHH
Confidence 4444432 3456777777754 455677999999999764 557889999999999 5543 567888898886
No 59
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=81.32 E-value=4.1 Score=33.52 Aligned_cols=65 Identities=11% Similarity=0.161 Sum_probs=48.8
Q ss_pred hcCCchHHHHHHHHHHhccCCcHHHHHHHHHHhhc--CC---chhHHHHHHHHHhccCcchHHHHHHHHHHhhc
Q 035556 108 KSGNPEALYRQGMHDYFSLGLTNSGFRLLKRAADK--KH---PEATYVYTIIMLLCCGSQFKKQGFELLSSLKS 176 (261)
Q Consensus 108 eaGNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--G~---~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~~ 176 (261)
+..++++.|.+|...+ ..++-++|+..+.++... .+ +.|.|.+|.+++ -.|. .++|++.|.++.+
T Consensus 11 ~~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~--~~~A~~~~~~~l~ 80 (261)
T 3qky_A 11 RHSSPQEAFERAMEFY-NQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYY-QNKE--YLLAASEYERFIQ 80 (261)
T ss_dssp CCSSHHHHHHHHHHHH-HTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHH-HTTC--HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-HhCc--HHHHHHHHHHHHH
Confidence 4577888898888654 556678999999998764 34 678899999998 4443 5678888887764
No 60
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=81.16 E-value=11 Score=26.01 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=13.2
Q ss_pred CCcHHHHHHHHHHhhc--CCchhHHHHHHHHH
Q 035556 127 GLTNSGFRLLKRAADK--KHPEATYVYTIIML 156 (261)
Q Consensus 127 ~~~~~Gl~lL~~AA~~--G~~~A~Y~lgmL~l 156 (261)
++.+++..++.++... .+..+.+.+|.++.
T Consensus 49 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 49 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 3444555555554332 22334444444444
No 61
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=81.11 E-value=2.7 Score=34.00 Aligned_cols=78 Identities=13% Similarity=0.000 Sum_probs=46.7
Q ss_pred CcchHHHHHHHHh--cCCchHHHHHHHHHHhcc-CCcHHHHHHHHHHhhcCC-chhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKK--SGNPEALYRQGMHDYFSL-GLTNSGFRLLKRAADKKH-PEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rCle--aGNpeA~Y~~Gm~~~~~~-~~~~~Gl~lL~~AA~~G~-~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
...+...+.++++ -.|+++.+..|...+... .....+.....++..... ..|.|..|+.++ -.| ..++|++.|
T Consensus 104 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~-~~~--~~~~A~~~~ 180 (208)
T 3urz_A 104 EKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKL-FTT--RYEKARNSL 180 (208)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHH-HHH--THHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH-Hcc--CHHHHHHHH
Confidence 4567778887765 356788888888765432 222344445555443321 236778888777 222 257788888
Q ss_pred HHhhc
Q 035556 172 SSLKS 176 (261)
Q Consensus 172 ~~~~~ 176 (261)
.++..
T Consensus 181 ~~al~ 185 (208)
T 3urz_A 181 QKVIL 185 (208)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 88874
No 62
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=81.10 E-value=4.3 Score=40.75 Aligned_cols=78 Identities=10% Similarity=0.024 Sum_probs=61.4
Q ss_pred CCcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHH
Q 035556 95 TDRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFEL 170 (261)
Q Consensus 95 ~~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~ 170 (261)
..+.+...+.++++. ++++|.+.+|..+. ..++.++|++.+.+|.. +.++.|.+++|.++. -.|. .++|++.
T Consensus 58 ~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~-~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~-~~g~--~~eAi~~ 133 (723)
T 4gyw_A 58 KLQEALMHYKEAIRISPTFADAYSNMGNTLK-EMQDVQGALQCYTRAIQINPAFADAHSNLASIHK-DSGN--IPEAIAS 133 (723)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCC--HHHHHHH
Confidence 356788888888764 56788888888654 45666899999999765 568999999999999 5553 6789999
Q ss_pred HHHhhc
Q 035556 171 LSSLKS 176 (261)
Q Consensus 171 f~~~~~ 176 (261)
|+++..
T Consensus 134 ~~~Al~ 139 (723)
T 4gyw_A 134 YRTALK 139 (723)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999884
No 63
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=81.06 E-value=9.8 Score=27.96 Aligned_cols=75 Identities=12% Similarity=0.053 Sum_probs=42.6
Q ss_pred cchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHH
Q 035556 97 RHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLS 172 (261)
Q Consensus 97 ~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~ 172 (261)
..+...+.++++. .++++.+..|... ...++-++|+..+.+|.. +.++.+.+.+|.++. -.|. .++|+++|.
T Consensus 30 ~~A~~~~~~al~~~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~-~~~~--~~~A~~~~~ 105 (166)
T 1a17_A 30 ENAIKFYSQAIELNPSNAIYYGNRSLAY-LRTECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGK--FRAALRDYE 105 (166)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-Hhcc--HHHHHHHHH
Confidence 3455555555543 2455555555543 334555677777777654 335666777777776 3332 455666666
Q ss_pred Hhh
Q 035556 173 SLK 175 (261)
Q Consensus 173 ~~~ 175 (261)
++.
T Consensus 106 ~a~ 108 (166)
T 1a17_A 106 TVV 108 (166)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 64
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=80.99 E-value=9 Score=30.74 Aligned_cols=76 Identities=13% Similarity=0.050 Sum_probs=50.7
Q ss_pred CcchHHHHHHHHhcC--CchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKSG--NPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rCleaG--NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
...+...+.++++.. ++++.+..|... ...++.++|+.++.+|.. +.++.+.+.+|.+++ -.|. .++|+++|
T Consensus 59 ~~~A~~~~~~al~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~g~--~~~A~~~~ 134 (275)
T 1xnf_A 59 RALARNDFSQALAIRPDMPEVFNYLGIYL-TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGR--DKLAQDDL 134 (275)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH-HTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHH-HHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHH-Hhcc--HHHHHHHH
Confidence 345667777776643 566666666643 455666788888888776 446778888888887 4443 56677777
Q ss_pred HHhh
Q 035556 172 SSLK 175 (261)
Q Consensus 172 ~~~~ 175 (261)
.++.
T Consensus 135 ~~a~ 138 (275)
T 1xnf_A 135 LAFY 138 (275)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 65
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=80.97 E-value=3.9 Score=30.64 Aligned_cols=61 Identities=13% Similarity=0.111 Sum_probs=47.0
Q ss_pred CchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHHHhh
Q 035556 111 NPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLSSLK 175 (261)
Q Consensus 111 NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~ 175 (261)
++++.|..|... +..++-++|+.++.+|.. +.++.+.+.+|.++. -.|. .++|++.|.++.
T Consensus 17 ~~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~--~~~A~~~~~~al 79 (142)
T 2xcb_A 17 TLEQLYALGFNQ-YQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ-SLGL--YEQALQSYSYGA 79 (142)
T ss_dssp HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HHhh--HHHHHHHHHHHH
Confidence 456778777654 556777999999999765 457889999999999 4443 677888888886
No 66
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=80.56 E-value=7.4 Score=31.37 Aligned_cols=77 Identities=9% Similarity=-0.058 Sum_probs=48.0
Q ss_pred CcchHHHHHHHHhcC-CchH----HHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHH
Q 035556 96 DRHASLFLMRCKKSG-NPEA----LYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGF 168 (261)
Q Consensus 96 ~~ka~~FL~rCleaG-NpeA----~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~ 168 (261)
...+...+.++++.. +++. .+..|... ...++.++|+..+.+|.. +.++.+.+.+|.+++ -.|. .++|+
T Consensus 53 ~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~--~~~A~ 128 (272)
T 3u4t_A 53 YDLAQKDIETYFSKVNATKAKSADFEYYGKIL-MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY-NKGN--FPLAI 128 (272)
T ss_dssp HHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTC--HHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHH-HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HccC--HHHHH
Confidence 455667777777632 2333 45555443 444556778888777765 446677777787777 3332 56777
Q ss_pred HHHHHhhc
Q 035556 169 ELLSSLKS 176 (261)
Q Consensus 169 ~~f~~~~~ 176 (261)
++|.++..
T Consensus 129 ~~~~~al~ 136 (272)
T 3u4t_A 129 QYMEKQIR 136 (272)
T ss_dssp HHHGGGCC
T ss_pred HHHHHHhh
Confidence 77777764
No 67
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=80.06 E-value=4 Score=33.59 Aligned_cols=80 Identities=9% Similarity=-0.017 Sum_probs=58.5
Q ss_pred CcchHHHHHHHHhc--CC---chHHHHHHHHHHhccCCcHHHHHHHHHHhhcC-----CchhHHHHHHHHHh-ccC----
Q 035556 96 DRHASLFLMRCKKS--GN---PEALYRQGMHDYFSLGLTNSGFRLLKRAADKK-----HPEATYVYTIIMLL-CCG---- 160 (261)
Q Consensus 96 ~~ka~~FL~rClea--GN---peA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~G-----~~~A~Y~lgmL~l~-~~G---- 160 (261)
...+...+..+++. ++ +++.|..|... +..++-++|+..+.++...- .+.|.|.+|.+++. +..
T Consensus 31 ~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~-~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~ 109 (261)
T 3qky_A 31 YDRAIEYFKAVFTYGRTHEWAADAQFYLARAY-YQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELD 109 (261)
T ss_dssp HHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSC
T ss_pred HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH-HHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccccc
Confidence 45677888888875 34 67888888875 45667799999999988742 25689999999983 110
Q ss_pred cchHHHHHHHHHHhhc
Q 035556 161 SQFKKQGFELLSSLKS 176 (261)
Q Consensus 161 ~e~~~~a~~~f~~~~~ 176 (261)
....++|++.|.++..
T Consensus 110 ~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 110 QTDTRKAIEAFQLFID 125 (261)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHH
Confidence 1237889999988873
No 68
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=79.95 E-value=7.3 Score=29.78 Aligned_cols=75 Identities=7% Similarity=0.009 Sum_probs=54.2
Q ss_pred cchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHH
Q 035556 97 RHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLS 172 (261)
Q Consensus 97 ~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~ 172 (261)
+++...+..++.. .++.+.|..|.. ++..++-++|...+.+|.. +.++.|.+.+|.++. -.|. .++|++.|.
T Consensus 14 e~ai~~~~~a~~~~p~~~~~~~~la~~-y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~--~~~A~~~~~ 89 (150)
T 4ga2_A 14 ERYIASVQGSTPSPRQKSIKGFYFAKL-YYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYE-LEEN--TDKAVECYR 89 (150)
T ss_dssp HHHHHHHHHHSCSHHHHHTTHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHHH
T ss_pred HHHHHHHHHhcccCcccHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCc--hHHHHHHHH
Confidence 4555666666553 235566777754 5667777999999999765 567899999999999 5443 567888888
Q ss_pred Hhh
Q 035556 173 SLK 175 (261)
Q Consensus 173 ~~~ 175 (261)
++.
T Consensus 90 ~al 92 (150)
T 4ga2_A 90 RSV 92 (150)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 69
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=79.78 E-value=6.9 Score=27.55 Aligned_cols=63 Identities=8% Similarity=-0.067 Sum_probs=47.3
Q ss_pred CCchHHHHHHHHHHhccCCcHHHHHHHHHHhhc--CCchhHHHHHHHHHhccCcchHHHHHHHHHHhhc
Q 035556 110 GNPEALYRQGMHDYFSLGLTNSGFRLLKRAADK--KHPEATYVYTIIMLLCCGSQFKKQGFELLSSLKS 176 (261)
Q Consensus 110 GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~~ 176 (261)
.++++.+..|... +..++.++|+..+.+|... .+..+.+.+|.+++ -.|. .++|+++|.++..
T Consensus 14 ~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~--~~~A~~~~~~a~~ 78 (133)
T 2lni_A 14 DLALMVKNKGNEC-FQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT-KLLE--FQLALKDCEECIQ 78 (133)
T ss_dssp CHHHHHHHHHHHH-HHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHT-TTTC--HHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-Hhcc--HHHHHHHHHHHHH
Confidence 4567778888654 5566779999999998764 36788999999988 4443 5678888888764
No 70
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=79.69 E-value=9.9 Score=29.85 Aligned_cols=59 Identities=10% Similarity=-0.031 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHHHhh
Q 035556 113 EALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLSSLK 175 (261)
Q Consensus 113 eA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~ 175 (261)
.+.+..|... +..++-++|+..+.+|.. +.+..|.|.+|.+++ ..|. .++|+++|.++.
T Consensus 89 ~~~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~--~~~A~~~~~~al 149 (198)
T 2fbn_A 89 SCNLNLATCY-NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANM-YFGF--LEEAKENLYKAA 149 (198)
T ss_dssp HHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HHTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-Hccc--HHHHHHHHHHHH
Confidence 5666666654 456777899999998765 457889999999999 4443 567888888876
No 71
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=78.97 E-value=5.5 Score=30.33 Aligned_cols=61 Identities=11% Similarity=0.064 Sum_probs=46.9
Q ss_pred CchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHHHhh
Q 035556 111 NPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLSSLK 175 (261)
Q Consensus 111 NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~ 175 (261)
++++.+.+|... +..++-++|+..+.+|.. +.++.+.+.+|.+++ -.|. .++|+++|.++.
T Consensus 10 ~a~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~--~~~A~~~~~~al 72 (164)
T 3sz7_A 10 ESDKLKSEGNAA-MARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYS-ASGQ--HEKAAEDAELAT 72 (164)
T ss_dssp HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTC--HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH-HccC--HHHHHHHHHHHH
Confidence 456677777654 466777999999999876 457889999999999 4443 567888888886
No 72
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=78.94 E-value=5.9 Score=28.53 Aligned_cols=61 Identities=8% Similarity=-0.020 Sum_probs=46.7
Q ss_pred chHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHHHhhc
Q 035556 112 PEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLSSLKS 176 (261)
Q Consensus 112 peA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~~ 176 (261)
+++.+.+|.. ++..++-++|+..+.+|.. +.++.+.+.+|.+++ -.|. .++|++.|.++..
T Consensus 4 a~~~~~~g~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-~~~~--~~~A~~~~~~al~ 66 (126)
T 3upv_A 4 AEEARLEGKE-YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA-KLMS--FPEAIADCNKAIE 66 (126)
T ss_dssp HHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcC--HHHHHHHHHHHHH
Confidence 4566777764 4567777999999999875 456889999999999 4443 6778888888873
No 73
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=78.90 E-value=13 Score=25.51 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=52.5
Q ss_pred CcchHHHHHHHHhcC--CchHHHHHHHHHHhccCCcHHHHHHHHHHhhc--CCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKSG--NPEALYRQGMHDYFSLGLTNSGFRLLKRAADK--KHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rCleaG--NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
...+..++.++++.+ ++.+.+..|.. ++..++.++|+.++.++... .+..+.+.+|.++. ..|. .++|+++|
T Consensus 51 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~--~~~A~~~~ 126 (136)
T 2fo7_A 51 YDEAIEYYQKALELDPRSAEAWYNLGNA-YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGD--YDEAIEYY 126 (136)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHH-HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HHcc--HHHHHHHH
Confidence 456677777777644 34455555543 45667779999999988764 35778888999888 4443 56788888
Q ss_pred HHhh
Q 035556 172 SSLK 175 (261)
Q Consensus 172 ~~~~ 175 (261)
.++.
T Consensus 127 ~~~~ 130 (136)
T 2fo7_A 127 QKAL 130 (136)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 74
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=78.30 E-value=9.3 Score=32.54 Aligned_cols=76 Identities=11% Similarity=-0.005 Sum_probs=56.1
Q ss_pred CcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
...+...+.++++. .|+++.+..|...+ ..++.++|+..+.+|.. +.+..|.|.+|.+++ ..|. .++|+++|
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~--~~~A~~~~ 95 (281)
T 2c2l_A 20 YPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQL-EMES--YDEAIANL 95 (281)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH-HTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCC--HHHHHHHH
Confidence 34577777777753 46777788887544 56677999999999877 457889999999999 5553 56677777
Q ss_pred HHhh
Q 035556 172 SSLK 175 (261)
Q Consensus 172 ~~~~ 175 (261)
.++.
T Consensus 96 ~~al 99 (281)
T 2c2l_A 96 QRAY 99 (281)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 75
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=77.98 E-value=5.5 Score=29.46 Aligned_cols=59 Identities=8% Similarity=0.006 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHHHhhc
Q 035556 114 ALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLSSLKS 176 (261)
Q Consensus 114 A~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~~ 176 (261)
..|.+|+.. +..++.++|+..+.+|.. +.++.|.|.+|++++ -.|. .++|++.|.++..
T Consensus 19 ~~~~~g~~~-~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~--~~~A~~~~~~al~ 79 (121)
T 1hxi_A 19 NPMEEGLSM-LKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEK--DGLAIIALNHARM 79 (121)
T ss_dssp CHHHHHHHH-HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTC--HHHHHHHHHHHHH
T ss_pred hHHHHHHHH-HHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCC--HHHHHHHHHHHHH
Confidence 456677654 456777999999999865 568999999999999 4443 5778888988873
No 76
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=77.90 E-value=12 Score=32.90 Aligned_cols=77 Identities=8% Similarity=-0.070 Sum_probs=56.2
Q ss_pred CcchHHHHHHHHhcCCch-------------------HHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHH
Q 035556 96 DRHASLFLMRCKKSGNPE-------------------ALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTII 154 (261)
Q Consensus 96 ~~ka~~FL~rCleaGNpe-------------------A~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL 154 (261)
...+...|.++++..+.. +.+.+|... ...++-++|+..+.+|.. +.+..|.|.+|.+
T Consensus 195 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~-~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a 273 (338)
T 2if4_A 195 LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACL-IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKA 273 (338)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHH-HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 456667777777654332 455666644 556677999999999865 4578999999999
Q ss_pred HHhccCcchHHHHHHHHHHhhc
Q 035556 155 MLLCCGSQFKKQGFELLSSLKS 176 (261)
Q Consensus 155 ~l~~~G~e~~~~a~~~f~~~~~ 176 (261)
++ ..|. .++|+++|.++..
T Consensus 274 ~~-~~g~--~~~A~~~l~~al~ 292 (338)
T 2if4_A 274 KA-ELGQ--MDSARDDFRKAQK 292 (338)
T ss_dssp HH-TTTC--HHHHHHHHHHTTC
T ss_pred HH-HcCC--HHHHHHHHHHHHH
Confidence 99 5554 6789999998863
No 77
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=77.86 E-value=5.2 Score=26.59 Aligned_cols=60 Identities=17% Similarity=0.165 Sum_probs=45.5
Q ss_pred CcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHH
Q 035556 96 DRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIML 156 (261)
Q Consensus 96 ~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l 156 (261)
...+..++.++++. .++++.+..|... +..++.++|+..+.+|.. +.++.+.+.+|.++.
T Consensus 25 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 25 YDEAIEYYQKALELDPNNAEAWYNLGNAY-YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45677788887764 4677788888764 456677999999999865 467889999998887
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=77.80 E-value=6.2 Score=39.56 Aligned_cols=77 Identities=12% Similarity=-0.031 Sum_probs=57.8
Q ss_pred CCcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHH
Q 035556 95 TDRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFEL 170 (261)
Q Consensus 95 ~~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~ 170 (261)
..+.+...+.++++. ++++|.+.+|... ...++.++|+..+.+|.. +.++.|.+++|.++. ..|. .++|.+.
T Consensus 92 ~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~-~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~-~~g~--~~~A~~~ 167 (723)
T 4gyw_A 92 DVQGALQCYTRAIQINPAFADAHSNLASIH-KDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ-IVCD--WTDYDER 167 (723)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTC--CTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHH-hccc--HHHHHHH
Confidence 356788888888764 5778889988864 455677999999999765 567899999999999 4443 2346666
Q ss_pred HHHhh
Q 035556 171 LSSLK 175 (261)
Q Consensus 171 f~~~~ 175 (261)
|.++.
T Consensus 168 ~~kal 172 (723)
T 4gyw_A 168 MKKLV 172 (723)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77665
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=77.38 E-value=15 Score=27.00 Aligned_cols=76 Identities=13% Similarity=0.102 Sum_probs=43.1
Q ss_pred CcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhhc--CCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAADK--KHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
...+...+.++++. .++.+.+..|... ...++.++|...+.++... .++.+.+.+|.++. -.|. .++|+++|
T Consensus 92 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~--~~~A~~~~ 167 (186)
T 3as5_A 92 YDLAVPLLIKVAEANPINFNVRFRLGVAL-DNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYE-QMGR--HEEALPHF 167 (186)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHH-HHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HcCC--HHHHHHHH
Confidence 34555666666654 3444555555433 3455557777777776543 34566777777776 3332 45566666
Q ss_pred HHhh
Q 035556 172 SSLK 175 (261)
Q Consensus 172 ~~~~ 175 (261)
.++.
T Consensus 168 ~~~~ 171 (186)
T 3as5_A 168 KKAN 171 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 80
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=77.18 E-value=13 Score=30.47 Aligned_cols=47 Identities=6% Similarity=-0.082 Sum_probs=21.7
Q ss_pred cCCcHHHHHHHHHHhh-----------cCCchhHHHHHHHHHhccCcchHHHHHHHHHHhh
Q 035556 126 LGLTNSGFRLLKRAAD-----------KKHPEATYVYTIIMLLCCGSQFKKQGFELLSSLK 175 (261)
Q Consensus 126 ~~~~~~Gl~lL~~AA~-----------~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~ 175 (261)
.++.++|...+.+|.. ...+.+.+.+|.++. -.|. .++|+++|.++.
T Consensus 206 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~--~~~A~~~~~~a~ 263 (330)
T 3hym_B 206 NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR-KLKK--YAEALDYHRQAL 263 (330)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH-HTTC--HHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH-HhcC--HHHHHHHHHHHH
Confidence 3344555555555544 233445555555555 2222 334445554443
No 81
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=77.06 E-value=4.9 Score=34.37 Aligned_cols=97 Identities=11% Similarity=0.116 Sum_probs=68.4
Q ss_pred cCHHHHHhcCccccccc--c----------C-CCCcchHHHHHHHHhcCCchHHHHHHHHHHhccCCcHHHHHHHHHHh-
Q 035556 75 DDDFVFEHASLDKFYVV--W----------P-MTDRHASLFLMRCKKSGNPEALYRQGMHDYFSLGLTNSGFRLLKRAA- 140 (261)
Q Consensus 75 ~~~~Vl~~~sl~~~~l~--w----------~-~~~~ka~~FL~rCleaGNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA- 140 (261)
.++.+.+..++..++.. . + .+.+....|+...+ -+++++.+.+|...+ ..++.++|..++.+|.
T Consensus 68 ~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~~l~~~l~~~l-p~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~ 145 (287)
T 3qou_A 68 AEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDXVL-PREEELXAQQAMQLM-QESNYTDALPLLXDAWQ 145 (287)
T ss_dssp TCHHHHHTTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHS-CCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHcCCCCCCeEEEEECCEEEEEeeCCCCHHHHHHHHHHHc-CCchhhHHHHHHHHH-hCCCHHHHHHHHHHHHH
Confidence 46788888888877532 1 1 12223445666655 377788888887654 5677799999999865
Q ss_pred -hcCCchhHHHHHHHHHhccCcchHHHHHHHHHHhhc
Q 035556 141 -DKKHPEATYVYTIIMLLCCGSQFKKQGFELLSSLKS 176 (261)
Q Consensus 141 -~~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~~ 176 (261)
.++++.|.|.+|.+++ -.|. .++|+++|.++..
T Consensus 146 ~~P~~~~a~~~la~~~~-~~g~--~~~A~~~l~~~~~ 179 (287)
T 3qou_A 146 LSNQNGEIGLLLAETLI-ALNR--SEDAEAVLXTIPL 179 (287)
T ss_dssp HTTSCHHHHHHHHHHHH-HTTC--HHHHHHHHTTSCG
T ss_pred hCCcchhHHHHHHHHHH-HCCC--HHHHHHHHHhCch
Confidence 4678999999999999 4443 5678888887753
No 82
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=77.00 E-value=8.6 Score=29.35 Aligned_cols=79 Identities=9% Similarity=0.004 Sum_probs=56.0
Q ss_pred CcchHHHHHHHHhcC--CchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHH-HHhccCcchHHHHHHH
Q 035556 96 DRHASLFLMRCKKSG--NPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTII-MLLCCGSQFKKQGFEL 170 (261)
Q Consensus 96 ~~ka~~FL~rCleaG--NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL-~l~~~G~e~~~~a~~~ 170 (261)
...+...+..+++.. ++++.+..|... +..++.++|+..+.+|.. +.++.+.+.+|.+ ++ -.|....++|+++
T Consensus 26 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~-~~~~~~~~~A~~~ 103 (177)
T 2e2e_A 26 PEAQLQALQDKIRANPQNSEQWALLGEYY-LWQNDYSNSLLAYRQALQLRGENAELYAALATVLYY-QASQHMTAQTRAM 103 (177)
T ss_dssp -CCCCHHHHHHHHHCCSCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHH-HTTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hcCCcchHHHHHH
Confidence 456777888877654 677888888764 456677999999999765 4578899999999 65 3332112678888
Q ss_pred HHHhhc
Q 035556 171 LSSLKS 176 (261)
Q Consensus 171 f~~~~~ 176 (261)
|.++..
T Consensus 104 ~~~al~ 109 (177)
T 2e2e_A 104 IDKALA 109 (177)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888763
No 83
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=76.87 E-value=3.5 Score=32.09 Aligned_cols=13 Identities=8% Similarity=-0.084 Sum_probs=6.4
Q ss_pred CchhHHHHHHHHH
Q 035556 144 HPEATYVYTIIML 156 (261)
Q Consensus 144 ~~~A~Y~lgmL~l 156 (261)
++.+.|.+|.+++
T Consensus 107 ~~~~~~~la~~~~ 119 (176)
T 2r5s_A 107 NFELACELAVQYN 119 (176)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 3444555555544
No 84
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=76.72 E-value=9.5 Score=30.43 Aligned_cols=76 Identities=13% Similarity=0.056 Sum_probs=48.2
Q ss_pred CcchHHHHHHHHhcC--CchHHHHHHHHHHhccCCcHHHHHHHHHHhh----cCCchhHHHHHHHHHhccCcchHHHHHH
Q 035556 96 DRHASLFLMRCKKSG--NPEALYRQGMHDYFSLGLTNSGFRLLKRAAD----KKHPEATYVYTIIMLLCCGSQFKKQGFE 169 (261)
Q Consensus 96 ~~ka~~FL~rCleaG--NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~----~G~~~A~Y~lgmL~l~~~G~e~~~~a~~ 169 (261)
...+...+.++++.. ++++.+..|... +..++.++|+.++.++.. ..+..+.+.+|.+++ ..|. .++|++
T Consensus 87 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~--~~~A~~ 162 (252)
T 2ho1_A 87 PKLADEEYRKALASDSRNARVLNNYGGFL-YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL-QMKK--PAQAKE 162 (252)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH-HTTC--HHHHHH
T ss_pred HHHHHHHHHHHHHHCcCcHHHHHHHHHHH-HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHH-HcCC--HHHHHH
Confidence 456677777776643 455555555543 445666788888888765 334567777777777 3332 456777
Q ss_pred HHHHhh
Q 035556 170 LLSSLK 175 (261)
Q Consensus 170 ~f~~~~ 175 (261)
+|.++.
T Consensus 163 ~~~~~~ 168 (252)
T 2ho1_A 163 YFEKSL 168 (252)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777665
No 85
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=76.65 E-value=0.88 Score=42.72 Aligned_cols=34 Identities=15% Similarity=0.321 Sum_probs=30.5
Q ss_pred CCCChHHHHHHHHHhcccChhhhHHHHHhcHHHHHh
Q 035556 38 ESLPHALLTEVMAQVASTSLVDLSRLKLSCKYFLQA 73 (261)
Q Consensus 38 ~~LPdDLlv~I~arVa~~S~~Dl~~l~ltcK~f~~l 73 (261)
..||||++.+|+..+. +..|+..+.++||+++.+
T Consensus 14 ~~LPdeil~~I~~~L~--~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 14 VATVDDVIEQVMTYIT--DPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCGGGTHHHHHTTCC--CHHHHHHHTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHhcC--CHHHHHHHHHHhHHHHHh
Confidence 4699999999999993 289999999999999987
No 86
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=76.42 E-value=9.5 Score=27.38 Aligned_cols=63 Identities=13% Similarity=-0.068 Sum_probs=47.5
Q ss_pred CCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHHHhhc
Q 035556 110 GNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLSSLKS 176 (261)
Q Consensus 110 GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~~ 176 (261)
.++++.+..|... +..++-++|+..+.+|.. +.++.+.+.+|.+++ -.|. .++|+++|.++..
T Consensus 7 ~~~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~--~~~A~~~~~~al~ 71 (137)
T 3q49_B 7 PSAQELKEQGNRL-FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQ--PEQALADCRRALE 71 (137)
T ss_dssp CCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH-HHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-HhcC--HHHHHHHHHHHHH
Confidence 4677778888654 456677999999999766 446789999999999 4443 5678888888763
No 87
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=75.82 E-value=4.8 Score=36.09 Aligned_cols=62 Identities=21% Similarity=0.200 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHhccCCcHHHHHHHHHHhhcCC-----chhHHHHHHHHHhccCcchHHHHHHHHHHhhccc
Q 035556 113 EALYRQGMHDYFSLGLTNSGFRLLKRAADKKH-----PEATYVYTIIMLLCCGSQFKKQGFELLSSLKSTY 178 (261)
Q Consensus 113 eA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~G~-----~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~~t~ 178 (261)
++.|.+|+. +-..++.++|+..+.+|....+ .+|.|.+|+++. ..|. .++|.+.|+++....
T Consensus 172 ~a~~~LG~a-l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~-~lGr--~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 172 AAGVAHGVA-AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARR-SQGN--ESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHH-HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHH-HHTC--HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHH-HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHH-HcCC--HHHHHHHHHHHHhcC
Confidence 478888887 4566777999999999985442 358899999999 6664 467888898887544
No 88
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=75.50 E-value=15 Score=30.12 Aligned_cols=75 Identities=13% Similarity=-0.012 Sum_probs=33.4
Q ss_pred cchHHHHHHHHhcC--CchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHH
Q 035556 97 RHASLFLMRCKKSG--NPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLS 172 (261)
Q Consensus 97 ~ka~~FL~rCleaG--NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~ 172 (261)
..+..++.++++.. ++++.+..|... ...++.++|+..+.+|.. +.+..+.+.+|.+++ -.|. .++|+++|.
T Consensus 108 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~--~~~A~~~~~ 183 (330)
T 3hym_B 108 EHARRYLSKATTLEKTYGPAWIAYGHSF-AVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG-LTNN--SKLAERFFS 183 (330)
T ss_dssp HHHHHHHHHHHTTCTTCTHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH-HTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHH-HHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH-HHhh--HHHHHHHHH
Confidence 34445555554422 233434333322 233344555555555444 223455555555555 2221 344555555
Q ss_pred Hhh
Q 035556 173 SLK 175 (261)
Q Consensus 173 ~~~ 175 (261)
++.
T Consensus 184 ~al 186 (330)
T 3hym_B 184 QAL 186 (330)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 89
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=75.49 E-value=9.9 Score=28.30 Aligned_cols=60 Identities=10% Similarity=0.042 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHHHhhc
Q 035556 113 EALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLSSLKS 176 (261)
Q Consensus 113 eA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~~ 176 (261)
++.+-+|.. ++..++-++|+..+.+|.. +.++.+.+.+|.+++ -.|. .++|++.|.++..
T Consensus 14 ~~~~~~G~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~--~~~A~~~~~~al~ 75 (126)
T 4gco_A 14 QEEKNKGNE-YFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLT-KLME--FQRALDDCDTCIR 75 (126)
T ss_dssp HHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHH-hhcc--HHHHHHHHHHHHH
Confidence 456667754 5677888999999999865 557899999999999 4443 6789999998873
No 90
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=74.54 E-value=10 Score=29.33 Aligned_cols=73 Identities=12% Similarity=-0.003 Sum_probs=52.7
Q ss_pred hHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhhcC--C--chhHHHHHHHHHhccCcchHHHHHHHHH
Q 035556 99 ASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAADKK--H--PEATYVYTIIMLLCCGSQFKKQGFELLS 172 (261)
Q Consensus 99 a~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~G--~--~~A~Y~lgmL~l~~~G~e~~~~a~~~f~ 172 (261)
+...+.++++. +|+++.|..|... ...++.++|...+.++.... + ..|.+.+|.++. ..|. .++++..|+
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~-~~g~--~~~A~~~y~ 168 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQY-NQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILS-ALGQ--GNAIASKYR 168 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH-HHCS--SCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH-HHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH-HhCC--CCcHHHHHH
Confidence 46677777764 5688999999865 45667799999999988754 2 458999999988 4443 235666676
Q ss_pred Hhh
Q 035556 173 SLK 175 (261)
Q Consensus 173 ~~~ 175 (261)
++.
T Consensus 169 ~al 171 (176)
T 2r5s_A 169 RQL 171 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 91
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=74.30 E-value=9.7 Score=30.67 Aligned_cols=79 Identities=11% Similarity=0.106 Sum_probs=60.1
Q ss_pred CCcchHHHHHHHHhcC--CchHHHHHHHHHHhccCCcHHHHHHHHHHhhcC-C----chhHHHHHHHHHhccCcchHHHH
Q 035556 95 TDRHASLFLMRCKKSG--NPEALYRQGMHDYFSLGLTNSGFRLLKRAADKK-H----PEATYVYTIIMLLCCGSQFKKQG 167 (261)
Q Consensus 95 ~~~ka~~FL~rCleaG--NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~G-~----~~A~Y~lgmL~l~~~G~e~~~~a 167 (261)
....+...+..+++.. ++++.+..|. .++..++.++|+..+.+|...+ + ..+.+.+|.++. -.|. .++|
T Consensus 18 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~-~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~-~~~~--~~~A 93 (272)
T 3u4t_A 18 NYAEAIEVFNKLEAKKYNSPYIYNRRAV-CYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM-KKGQ--DSLA 93 (272)
T ss_dssp CHHHHHHHHHHHHHTTCCCSTTHHHHHH-HHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH-HTTC--HHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHH-HHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH-Hccc--HHHH
Confidence 3457788888888754 6778888888 5667778899999999998743 2 234689999998 4443 6789
Q ss_pred HHHHHHhhcc
Q 035556 168 FELLSSLKST 177 (261)
Q Consensus 168 ~~~f~~~~~t 177 (261)
+++|.++...
T Consensus 94 ~~~~~~a~~~ 103 (272)
T 3u4t_A 94 IQQYQAAVDR 103 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999998853
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=74.30 E-value=8 Score=37.79 Aligned_cols=75 Identities=13% Similarity=0.011 Sum_probs=47.2
Q ss_pred cchHHHHHHHH--------h--cCCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchH
Q 035556 97 RHASLFLMRCK--------K--SGNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFK 164 (261)
Q Consensus 97 ~ka~~FL~rCl--------e--aGNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~ 164 (261)
..+...+.+++ + -.++++.+.+|...+ ..++.++|+..+.+|.. +.+..|.|.+|++++ ..|. .
T Consensus 408 ~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~--~ 483 (681)
T 2pzi_A 408 VQTLDSLRAARHGALDADGVDFSESVELPLMEVRALL-DLGDVAKATRKLDDLAERVGWRWRLVWYRAVAEL-LTGD--Y 483 (681)
T ss_dssp HHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHTC--H
T ss_pred HHHHHHHHHhhhhcccccccccccchhHHHHHHHHHH-hcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHH-HcCC--H
Confidence 34555666666 2 345667777776543 44555777777777664 456777888888777 3332 5
Q ss_pred HHHHHHHHHhh
Q 035556 165 KQGFELLSSLK 175 (261)
Q Consensus 165 ~~a~~~f~~~~ 175 (261)
++|++.|.++.
T Consensus 484 ~~A~~~~~~al 494 (681)
T 2pzi_A 484 DSATKHFTEVL 494 (681)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56777777765
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=74.07 E-value=8.9 Score=31.02 Aligned_cols=61 Identities=7% Similarity=0.036 Sum_probs=35.0
Q ss_pred CchHHHHHHHHHHhccCCcHHHHHHHHHHhhc--CC---chhHHHHHHHHHhccCcchHHHHHHHHHHhh
Q 035556 111 NPEALYRQGMHDYFSLGLTNSGFRLLKRAADK--KH---PEATYVYTIIMLLCCGSQFKKQGFELLSSLK 175 (261)
Q Consensus 111 NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--G~---~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~ 175 (261)
++++.|.+|+. ++..++-++|+..+.++... .+ ..|.|.+|.+++ -.|. .++|++.|.++.
T Consensus 3 ~~~~~~~~a~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~-~~~~--~~~A~~~~~~~l 68 (225)
T 2yhc_A 3 PPNEIYATAQQ-KLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNAD--LPLAQAAIDRFI 68 (225)
T ss_dssp CHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTC--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCC--HHHHHHHHHHHH
Confidence 45566666654 34455556777777776542 12 246677777776 3332 455666666655
No 94
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=73.85 E-value=8.5 Score=35.13 Aligned_cols=76 Identities=7% Similarity=-0.016 Sum_probs=37.1
Q ss_pred CcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
...+..++.++++. .|+++.+.+|..... .++.++|+..+.+|.. +.+..|.+.+|.++. ..|. .++|++.|
T Consensus 148 ~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~-~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~-~~g~--~~eAl~~~ 223 (382)
T 2h6f_A 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEW-LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQ-EFKL--WDNELQYV 223 (382)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTC--CTTHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHH-HcCC--hHHHHHHH
Confidence 34455555555542 244555555554332 2333555555555443 334555666666555 2222 23455555
Q ss_pred HHhh
Q 035556 172 SSLK 175 (261)
Q Consensus 172 ~~~~ 175 (261)
.++.
T Consensus 224 ~~al 227 (382)
T 2h6f_A 224 DQLL 227 (382)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 95
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=73.52 E-value=7.8 Score=34.98 Aligned_cols=63 Identities=10% Similarity=-0.024 Sum_probs=48.0
Q ss_pred CCchHHHHHHHHHHhccCCcHHHHHHHHHHhhc--CCchhHHHHHHHHHhccCcchHHHHHHHHHHhhc
Q 035556 110 GNPEALYRQGMHDYFSLGLTNSGFRLLKRAADK--KHPEATYVYTIIMLLCCGSQFKKQGFELLSSLKS 176 (261)
Q Consensus 110 GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~~ 176 (261)
.++.+.+..|... +..++-++|+..+.+|... .++.|.|.+|.+++ ..|. .++|+++|.++..
T Consensus 271 ~~~~~~~nla~~~-~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~--~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 271 VALSCVLNIGACK-LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ-GLKE--YDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH-HccC--HHHHHHHHHHHHH
Confidence 4456667777654 4666779999999998864 46889999999999 5553 5778888888863
No 96
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=72.58 E-value=23 Score=28.03 Aligned_cols=77 Identities=8% Similarity=-0.016 Sum_probs=56.4
Q ss_pred CcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhhc--CCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAADK--KHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
...+..++.++++. .++++.+..|... ...++.++|+..+.+|... .+..+.+.+|.+++ -.|. .++|+++|
T Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~--~~~A~~~~ 128 (252)
T 2ho1_A 53 TEQAKVPLRKALEIDPSSADAHAALAVVF-QTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY-EQKR--YEEAYQRL 128 (252)
T ss_dssp TGGGHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HHhH--HHHHHHHH
Confidence 45677788877764 3566677766654 4566779999999998764 46788889999988 4443 67788888
Q ss_pred HHhhc
Q 035556 172 SSLKS 176 (261)
Q Consensus 172 ~~~~~ 176 (261)
.++..
T Consensus 129 ~~~~~ 133 (252)
T 2ho1_A 129 LEASQ 133 (252)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 88865
No 97
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=72.45 E-value=18 Score=29.61 Aligned_cols=88 Identities=9% Similarity=-0.039 Sum_probs=60.6
Q ss_pred cchHHHHHHHHhcCCch---------------HHHHHHHHHHhccCCcHHHHHHHHHHhhc---------CCchhH----
Q 035556 97 RHASLFLMRCKKSGNPE---------------ALYRQGMHDYFSLGLTNSGFRLLKRAADK---------KHPEAT---- 148 (261)
Q Consensus 97 ~ka~~FL~rCleaGNpe---------------A~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~---------G~~~A~---- 148 (261)
..+...+.++++ -+|+ +.+..|..+ ...++-++++....+|-.- .++.|.
T Consensus 28 eeAi~~Y~kAL~-l~p~~~~~~a~~~~~~~a~a~~n~g~al-~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~ 105 (159)
T 2hr2_A 28 DEAAANCRRAME-ISHTMPPEEAFDHAGFDAFCHAGLAEAL-AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAV 105 (159)
T ss_dssp HHHHHHHHHHHH-HHTTSCTTSCCCHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHH
T ss_pred HHHHHHHHHHHh-hCCCCcchhhhhhccchHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHH
Confidence 345566666665 3333 667777654 4556668888888888744 567788
Q ss_pred HHHHHHHHhccCcchHHHHHHHHHHhhc--------ccchHHHHHHHHh
Q 035556 149 YVYTIIMLLCCGSQFKKQGFELLSSLKS--------TYGIRECRTKIRA 189 (261)
Q Consensus 149 Y~lgmL~l~~~G~e~~~~a~~~f~~~~~--------t~~~~ecr~ki~~ 189 (261)
|+.|..+. ..|. .++|++.|.++.. .+.+....++|+.
T Consensus 106 ~~rG~aL~-~lgr--~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~ 151 (159)
T 2hr2_A 106 YSRALALD-GLGR--GAEAMPEFKKVVEMIEERKGETPGKERMMEVAID 151 (159)
T ss_dssp HHHHHHHH-HTTC--HHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHH
T ss_pred HhHHHHHH-HCCC--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 99999999 6665 5678888998862 3355666666654
No 98
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=72.23 E-value=14 Score=31.44 Aligned_cols=75 Identities=8% Similarity=0.018 Sum_probs=47.3
Q ss_pred cchHHHHHHHHhcC----CchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHH
Q 035556 97 RHASLFLMRCKKSG----NPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFEL 170 (261)
Q Consensus 97 ~ka~~FL~rCleaG----NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~ 170 (261)
..+...+.++++.. ++++.+..|... ...++.++|+..+.+|.. +.++.+.+.+|.++. -.|. .++|+++
T Consensus 194 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~--~~~A~~~ 269 (365)
T 4eqf_A 194 EGVKELYLEAAHQNGDMIDPDLQTGLGVLF-HLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLA-NGDR--SEEAVEA 269 (365)
T ss_dssp HHHHHHHHHHHHHSCSSCCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHH
T ss_pred HHHHHHHHHHHHhCcCccCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCC--HHHHHHH
Confidence 34556677776644 445666666443 445666788888877665 345677778888777 3332 4567777
Q ss_pred HHHhh
Q 035556 171 LSSLK 175 (261)
Q Consensus 171 f~~~~ 175 (261)
|.++.
T Consensus 270 ~~~al 274 (365)
T 4eqf_A 270 YTRAL 274 (365)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77665
No 99
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=71.78 E-value=17 Score=28.84 Aligned_cols=77 Identities=10% Similarity=-0.075 Sum_probs=58.0
Q ss_pred CcchHHHHHHHHhcC---CchHHHHHHHHHHhccCCcHHHHHHHHHHhhcC--CchhHHHHHHHHHhccCcchHHHHHHH
Q 035556 96 DRHASLFLMRCKKSG---NPEALYRQGMHDYFSLGLTNSGFRLLKRAADKK--HPEATYVYTIIMLLCCGSQFKKQGFEL 170 (261)
Q Consensus 96 ~~ka~~FL~rCleaG---NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~G--~~~A~Y~lgmL~l~~~G~e~~~~a~~~ 170 (261)
...+..++.++++.. ++.+.|..|... +..++.++|+..+.+|.... ++.+.+.+|.++. -.|. .++|++.
T Consensus 23 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~--~~~A~~~ 98 (228)
T 4i17_A 23 YAVAFEKYSEYLKLTNNQDSVTAYNCGVCA-DNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR-DMKN--NQEYIAT 98 (228)
T ss_dssp HHHHHHHHHHHHHHTTTCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH-HTTC--HHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCcHHHHHHHHHH-HHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH-Hccc--HHHHHHH
Confidence 457888888888754 456777777654 45667799999999988744 5778999999999 4443 5678888
Q ss_pred HHHhhc
Q 035556 171 LSSLKS 176 (261)
Q Consensus 171 f~~~~~ 176 (261)
|.++..
T Consensus 99 ~~~al~ 104 (228)
T 4i17_A 99 LTEGIK 104 (228)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888874
No 100
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=71.73 E-value=19 Score=26.43 Aligned_cols=77 Identities=10% Similarity=0.077 Sum_probs=54.2
Q ss_pred CcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
...+...+.++++. .++++.+..|... +..++.++|..++.++.. +.++.+.+.+|.+++ ..|. .++|+++|
T Consensus 58 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~--~~~A~~~~ 133 (186)
T 3as5_A 58 VDRGTELLERSLADAPDNVKVATVLGLTY-VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD-NLGR--FDEAIDSF 133 (186)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHH-HcCc--HHHHHHHH
Confidence 45677778877765 3456666666543 455677899999998765 356788888999888 4443 56788888
Q ss_pred HHhhc
Q 035556 172 SSLKS 176 (261)
Q Consensus 172 ~~~~~ 176 (261)
.++..
T Consensus 134 ~~~~~ 138 (186)
T 3as5_A 134 KIALG 138 (186)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87763
No 101
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=70.94 E-value=13 Score=25.76 Aligned_cols=61 Identities=8% Similarity=-0.015 Sum_probs=44.0
Q ss_pred chHHHHHHHHHHhccCCcHHHHHHHHHHhhc--CCchhHHHHHHHHHhccCcchHHHHHHHHHHhhc
Q 035556 112 PEALYRQGMHDYFSLGLTNSGFRLLKRAADK--KHPEATYVYTIIMLLCCGSQFKKQGFELLSSLKS 176 (261)
Q Consensus 112 peA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~~ 176 (261)
+++.+..|.. ++..++.++|+.++.+|... .++.+.+.+|.+++ -.|. .++|+++|.++..
T Consensus 4 ~~~~~~l~~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~--~~~A~~~~~~~~~ 66 (131)
T 1elr_A 4 ALKEKELGND-AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF-EKGD--YNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-Hhcc--HHHHHHHHHHHHh
Confidence 3456666654 35667779999999998764 46788899999998 4443 5677777877763
No 102
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=70.80 E-value=15 Score=25.08 Aligned_cols=60 Identities=20% Similarity=0.267 Sum_probs=43.7
Q ss_pred chHHHHHHHHHHhccCCcHHHHHHHHHHhhc--CCchhHHHHHHHHHhccCcchHHHHHHHHHHhh
Q 035556 112 PEALYRQGMHDYFSLGLTNSGFRLLKRAADK--KHPEATYVYTIIMLLCCGSQFKKQGFELLSSLK 175 (261)
Q Consensus 112 peA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~ 175 (261)
+++.+..|.. ++..++.++|+.++.+|... .+..+.+.+|.++. -.|. .++|+++|.++.
T Consensus 9 ~~~~~~~~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~--~~~A~~~~~~~~ 70 (125)
T 1na0_A 9 AEAWYNLGNA-YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGD--YDEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HhCC--HHHHHHHHHHHH
Confidence 5566666654 45567779999999998753 46778889999988 4443 567888888776
No 103
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=70.59 E-value=8.5 Score=30.66 Aligned_cols=77 Identities=10% Similarity=-0.052 Sum_probs=50.0
Q ss_pred CCcchHHHHHHHHhc-------C---CchHHHHHHHHHHhccCCcHHHHHHHHHHhhc----------CCchhHHHHHHH
Q 035556 95 TDRHASLFLMRCKKS-------G---NPEALYRQGMHDYFSLGLTNSGFRLLKRAADK----------KHPEATYVYTII 154 (261)
Q Consensus 95 ~~~ka~~FL~rClea-------G---NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~----------G~~~A~Y~lgmL 154 (261)
+...+...+.++++. . ++++.+..|... +..++.++|+.++.+|... ....+.+.+|.+
T Consensus 16 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVY-RDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 345666777766662 2 345666666544 4566778999999888753 235678888998
Q ss_pred HHhccCcchHHHHHHHHHHhh
Q 035556 155 MLLCCGSQFKKQGFELLSSLK 175 (261)
Q Consensus 155 ~l~~~G~e~~~~a~~~f~~~~ 175 (261)
+. -.|. .++|+++|.++.
T Consensus 95 ~~-~~g~--~~~A~~~~~~al 112 (283)
T 3edt_B 95 YG-KRGK--YKEAEPLCKRAL 112 (283)
T ss_dssp HH-TTTC--HHHHHHHHHHHH
T ss_pred HH-Hhcc--HHHHHHHHHHHH
Confidence 88 4443 455666666654
No 104
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=70.35 E-value=19 Score=31.57 Aligned_cols=76 Identities=8% Similarity=-0.041 Sum_probs=50.5
Q ss_pred CcchHHHHHHHHhcCCc-----------------hHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHH
Q 035556 96 DRHASLFLMRCKKSGNP-----------------EALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIML 156 (261)
Q Consensus 96 ~~ka~~FL~rCleaGNp-----------------eA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l 156 (261)
...+...+.++++.... .+.+.+|... +..++-++|+..+.+|.. +.++.|.|.+|.+++
T Consensus 163 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~-~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 241 (336)
T 1p5q_A 163 YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH-LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL 241 (336)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34566667776664322 4555666543 445666888888888765 446788888888888
Q ss_pred hccCcchHHHHHHHHHHhh
Q 035556 157 LCCGSQFKKQGFELLSSLK 175 (261)
Q Consensus 157 ~~~G~e~~~~a~~~f~~~~ 175 (261)
..|. .++|+++|.++.
T Consensus 242 -~~g~--~~~A~~~~~~al 257 (336)
T 1p5q_A 242 -AVND--FELARADFQKVL 257 (336)
T ss_dssp -HTTC--HHHHHHHHHHHH
T ss_pred -HCCC--HHHHHHHHHHHH
Confidence 4443 567777787776
No 105
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=70.25 E-value=13 Score=28.23 Aligned_cols=96 Identities=18% Similarity=0.159 Sum_probs=61.4
Q ss_pred hcCHHHHHhcCccccccccCCCCcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhhc--CCchhHH
Q 035556 74 ADDDFVFEHASLDKFYVVWPMTDRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAADK--KHPEATY 149 (261)
Q Consensus 74 ~~~~~Vl~~~sl~~~~l~w~~~~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--G~~~A~Y 149 (261)
+.++.||-.++.-.... .+.+.+...+.++++. .|+++.+..|... ...++.++++..+.+|... .++.+.+
T Consensus 2 ge~~~iy~~lG~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 77 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTK---GDFDGAIRAYKKVLKADPNNVETLLKLGKTY-MDIGLPNDAIESLKKFVVLDTTSAEAYY 77 (184)
T ss_dssp --CHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred CcHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCchhHHHHH
Confidence 34556665555432221 1245678888888875 5677777777654 4556668888888887653 3577778
Q ss_pred HHHHHHHhccCcchHHHHHHHHHHhhc
Q 035556 150 VYTIIMLLCCGSQFKKQGFELLSSLKS 176 (261)
Q Consensus 150 ~lgmL~l~~~G~e~~~~a~~~f~~~~~ 176 (261)
.+|.++. -.+. .+.+.+.+.++..
T Consensus 78 ~~~~~~~-~~~~--~~~a~~~~~~a~~ 101 (184)
T 3vtx_A 78 ILGSANF-MIDE--KQAAIDALQRAIA 101 (184)
T ss_dssp HHHHHHH-HTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHH-HcCC--HHHHHHHHHHHHH
Confidence 8888877 3332 5667777777764
No 106
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=70.08 E-value=24 Score=27.65 Aligned_cols=76 Identities=9% Similarity=-0.033 Sum_probs=48.8
Q ss_pred CcchHHHHHHHHhcC--CchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKSG--NPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rCleaG--NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
...+...+.++++.. ++++.+..|... ...++.++|+..+.+|.. +.++.+.+.+|.++. -.|. .++|+++|
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~g~--~~~A~~~~ 230 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAAL-AKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI-AVKE--YASALETL 230 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HHhh--HHHHHHHH
Confidence 456677777776643 455555555543 455666888888888764 345777888888888 4443 45666666
Q ss_pred HHhh
Q 035556 172 SSLK 175 (261)
Q Consensus 172 ~~~~ 175 (261)
.++.
T Consensus 231 ~~a~ 234 (258)
T 3uq3_A 231 DAAR 234 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 107
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.80 E-value=19 Score=25.79 Aligned_cols=63 Identities=13% Similarity=0.014 Sum_probs=45.9
Q ss_pred CCchHHHHHHHHHHhccCCcHHHHHHHHHHhhcCC-----chhHHHHHHHHHhccCcchHHHHHHHHHHhhc
Q 035556 110 GNPEALYRQGMHDYFSLGLTNSGFRLLKRAADKKH-----PEATYVYTIIMLLCCGSQFKKQGFELLSSLKS 176 (261)
Q Consensus 110 GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~G~-----~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~~ 176 (261)
.++++.+..|.. ++..++.++++.++.+|..... ..+.+.+|.+++ -.|. .++|+++|.++..
T Consensus 26 ~~~~~~~~~a~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~-~~~~--~~~A~~~~~~~~~ 93 (148)
T 2dba_A 26 SSVEQLRKEGNE-LFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHL-KLED--YDKAETEASKAIE 93 (148)
T ss_dssp CCHHHHHHHHHH-HHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-HTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH-HHcc--HHHHHHHHHHHHh
Confidence 455666666654 4566777999999999987543 577888999888 4443 5678888887763
No 108
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=69.77 E-value=15 Score=25.26 Aligned_cols=62 Identities=8% Similarity=0.011 Sum_probs=45.1
Q ss_pred CchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHHHhhc
Q 035556 111 NPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLSSLKS 176 (261)
Q Consensus 111 NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~~ 176 (261)
++++.+..|... +..++.+.|..++.+|.. +.++.+.+.+|.+++ -.|. .++|+++|.++..
T Consensus 11 ~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~--~~~A~~~~~~~~~ 74 (131)
T 2vyi_A 11 EAERLKTEGNEQ-MKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYS-KLGN--YAGAVQDCERAIC 74 (131)
T ss_dssp HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH-HHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-Hhhc--hHHHHHHHHHHHh
Confidence 455667777654 456677999999999865 346788899999998 4443 5678888887763
No 109
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=69.70 E-value=12 Score=25.44 Aligned_cols=62 Identities=11% Similarity=0.076 Sum_probs=45.3
Q ss_pred CchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHHHhhc
Q 035556 111 NPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLSSLKS 176 (261)
Q Consensus 111 NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~~ 176 (261)
++++.+..|... +..++.++|..++.+|.. +.++.+.+.+|.+++ -.|. .++|+++|.++..
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~--~~~A~~~~~~~~~ 66 (118)
T 1elw_A 3 QVNELKEKGNKA-LSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGD--YQKAYEDGCKTVD 66 (118)
T ss_dssp HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTC--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-hhcc--HHHHHHHHHHHHH
Confidence 345667777654 456777999999999865 446888999999998 3332 5678888887763
No 110
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=69.28 E-value=10 Score=25.94 Aligned_cols=51 Identities=12% Similarity=0.092 Sum_probs=36.4
Q ss_pred HhccCCcHHHHHHHHHHhhc--CCch-hHHHHHHHHHhccCcchHHHHHHHHHHhhc
Q 035556 123 YFSLGLTNSGFRLLKRAADK--KHPE-ATYVYTIIMLLCCGSQFKKQGFELLSSLKS 176 (261)
Q Consensus 123 ~~~~~~~~~Gl~lL~~AA~~--G~~~-A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~~ 176 (261)
++..++-++|+..+.+|... .++. +.+.+|.+++ -.|. .++|+++|.++..
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~-~~~~--~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYR-KLGD--WQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHH-HHTC--HHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-HcCC--HHHHHHHHHHHHh
Confidence 34556668888888887653 3566 8888999888 4443 5678888888763
No 111
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=69.23 E-value=12 Score=27.72 Aligned_cols=58 Identities=5% Similarity=-0.113 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHHHhh
Q 035556 114 ALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLSSLK 175 (261)
Q Consensus 114 A~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~ 175 (261)
|..-+|.. ++..++-++|+..+.+|.. +.++.+.+++|++++ -.|. .++|++.|.++.
T Consensus 10 a~~~lG~~-~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~-~~~~--~~~A~~~~~~al 69 (127)
T 4gcn_A 10 AEKDLGNA-AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYF-EEKK--FAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHH-Hhhh--HHHHHHHHHHHH
Confidence 34445654 4567788999999999876 557889999999999 4443 567888888776
No 112
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=69.01 E-value=11 Score=30.11 Aligned_cols=45 Identities=11% Similarity=-0.096 Sum_probs=20.6
Q ss_pred CcchHHHHHHHHhcCCchHHHHHHHHHHhccCCcHHHHHHHHHHh
Q 035556 96 DRHASLFLMRCKKSGNPEALYRQGMHDYFSLGLTNSGFRLLKRAA 140 (261)
Q Consensus 96 ~~ka~~FL~rCleaGNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA 140 (261)
...+...+.++++..+....+...+......++.++|+..+.++.
T Consensus 127 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 127 DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 445666666666544333322222222233344455555554443
No 113
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=68.97 E-value=31 Score=26.31 Aligned_cols=77 Identities=13% Similarity=0.065 Sum_probs=55.1
Q ss_pred CcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhcc-CcchHHHHHHH
Q 035556 96 DRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCC-GSQFKKQGFEL 170 (261)
Q Consensus 96 ~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~-G~e~~~~a~~~ 170 (261)
...+...+.+.++. .++++.+..|... ...++.++|+..+.+|.. +.+..+.+.+|.+++ .. |. .++|+++
T Consensus 24 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~--~~~A~~~ 99 (225)
T 2vq2_A 24 YRQATASIEDALKSDPKNELAWLVRAEIY-QYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC-GRLNR--PAESMAY 99 (225)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCC--HHHHHHH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHH-HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCc--HHHHHHH
Confidence 34566777777664 3566677766654 456677999999999876 446788899999998 55 43 5678888
Q ss_pred HHHhhc
Q 035556 171 LSSLKS 176 (261)
Q Consensus 171 f~~~~~ 176 (261)
|.++..
T Consensus 100 ~~~~~~ 105 (225)
T 2vq2_A 100 FDKALA 105 (225)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 888765
No 114
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=68.62 E-value=12 Score=34.55 Aligned_cols=62 Identities=16% Similarity=0.013 Sum_probs=38.3
Q ss_pred CchHHHHHHHHHHhccCCc-HHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHHHhhc
Q 035556 111 NPEALYRQGMHDYFSLGLT-NSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLSSLKS 176 (261)
Q Consensus 111 NpeA~Y~~Gm~~~~~~~~~-~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~~ 176 (261)
++++.|..|...+ ..++- ++|+..+.+|.. +.++.|.+.+|.+++ -.|. .++|+++|.++..
T Consensus 101 ~a~~~~~lg~~~~-~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~--~~~A~~~~~~al~ 165 (474)
T 4abn_A 101 EAQALMLKGKALN-VTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYW-KKGD--VTSAHTCFSGALT 165 (474)
T ss_dssp CHHHHHHHHHHHT-SSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTC--HHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHH-hccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCC--HHHHHHHHHHHHh
Confidence 4566666666543 34555 777777777643 445677777777777 3332 4567777776653
No 115
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=68.28 E-value=25 Score=29.72 Aligned_cols=76 Identities=12% Similarity=-0.032 Sum_probs=43.7
Q ss_pred cchHHHHHHHHhcC---CchHHHHHHHHHHhccCCcHHHHHHHHHHhhcC--Cch-hHHHHHHHHHhccCcchHHHHHHH
Q 035556 97 RHASLFLMRCKKSG---NPEALYRQGMHDYFSLGLTNSGFRLLKRAADKK--HPE-ATYVYTIIMLLCCGSQFKKQGFEL 170 (261)
Q Consensus 97 ~ka~~FL~rCleaG---NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~G--~~~-A~Y~lgmL~l~~~G~e~~~~a~~~ 170 (261)
..+...+.++++.- ++++.+..|.. +...++.+++...+.+|.... ++. +.+.+|.++. -.| ..++|.+.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~--~~~~A~~~ 156 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADY-EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAE--GIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH-HHH--CHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHH-Hhc--CHHHHHHH
Confidence 45667777777742 23333333332 234456677777777777643 233 6667776666 222 15567777
Q ss_pred HHHhhc
Q 035556 171 LSSLKS 176 (261)
Q Consensus 171 f~~~~~ 176 (261)
|.++..
T Consensus 157 ~~~a~~ 162 (308)
T 2ond_A 157 FKKARE 162 (308)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 777764
No 116
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=68.27 E-value=3.8 Score=36.76 Aligned_cols=59 Identities=8% Similarity=-0.058 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhhcCC----chhHHHHHHHHHhccCcchHHHHHHHHHHhhc
Q 035556 114 ALYRQGMHDYFSLGLTNSGFRLLKRAADKKH----PEATYVYTIIMLLCCGSQFKKQGFELLSSLKS 176 (261)
Q Consensus 114 A~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~G~----~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~~ 176 (261)
+.|..|+ .++..++-++++.+|.++....+ ..|.|++|+++. ..|. .++|+++|.++..
T Consensus 137 ~~~~~a~-l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~-~LG~--~~eAl~~l~~a~~ 199 (282)
T 4f3v_A 137 VAWMKAV-VYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA-NLAL--FTEAERRLTEAND 199 (282)
T ss_dssp HHHHHHH-HHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH-HTTC--HHHHHHHHHHHHT
T ss_pred HHHHHHH-HHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH-HCCC--HHHHHHHHHHHhc
Confidence 7899997 56777787999999997766542 348999999998 6664 6789999999863
No 117
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=68.06 E-value=24 Score=29.88 Aligned_cols=77 Identities=14% Similarity=0.126 Sum_probs=56.0
Q ss_pred CcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
...+...+.++++. .++++.+..|...+ ..++.++|+..+.+|.. +.++.+.+.+|.++. -.|. .++|+++|
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~--~~~A~~~~ 156 (365)
T 4eqf_A 81 LPVTILFMEAAILQDPGDAEAWQFLGITQA-ENENEQAAIVALQRCLELQPNNLKALMALAVSYT-NTSH--QQDACEAL 156 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-cccc--HHHHHHHH
Confidence 44567777777763 45677777776544 55677999999999876 456889999999998 4443 56788888
Q ss_pred HHhhc
Q 035556 172 SSLKS 176 (261)
Q Consensus 172 ~~~~~ 176 (261)
.++..
T Consensus 157 ~~al~ 161 (365)
T 4eqf_A 157 KNWIK 161 (365)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87763
No 118
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=67.45 E-value=28 Score=28.69 Aligned_cols=77 Identities=9% Similarity=-0.087 Sum_probs=55.2
Q ss_pred CcchHHHHHHHHhcCCchH------HHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHH
Q 035556 96 DRHASLFLMRCKKSGNPEA------LYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQG 167 (261)
Q Consensus 96 ~~ka~~FL~rCleaGNpeA------~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a 167 (261)
...+...+.++++..+... .+..|. .+...++.++|+..+.+|.. +.++.+.+.+|.++. ..|. .++|
T Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~--~~~A 325 (359)
T 3ieg_A 250 YTDATSKYESVMKTEPSVAEYTVRSKERICH-CFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL-IEEM--YDEA 325 (359)
T ss_dssp HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCC--HHHH
Confidence 4567778888887544433 222333 33567777999999999876 447889999999999 5553 6789
Q ss_pred HHHHHHhhc
Q 035556 168 FELLSSLKS 176 (261)
Q Consensus 168 ~~~f~~~~~ 176 (261)
+++|.++..
T Consensus 326 ~~~~~~a~~ 334 (359)
T 3ieg_A 326 IQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998874
No 119
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=67.02 E-value=31 Score=27.20 Aligned_cols=78 Identities=8% Similarity=-0.069 Sum_probs=57.4
Q ss_pred CcchHHHHHHHHhcC--CchHHHHHHHHHHhccCCcHHHHHHHHHHhhcC--Cc-------hhHHHHHHHHHhccCcchH
Q 035556 96 DRHASLFLMRCKKSG--NPEALYRQGMHDYFSLGLTNSGFRLLKRAADKK--HP-------EATYVYTIIMLLCCGSQFK 164 (261)
Q Consensus 96 ~~ka~~FL~rCleaG--NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~G--~~-------~A~Y~lgmL~l~~~G~e~~ 164 (261)
...+...+.++++.. ++++.+..|... ...++.++|+..+.+|.... ++ .+.+.+|.+++ -.|. .
T Consensus 58 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~-~~~~--~ 133 (228)
T 4i17_A 58 YKEAADYFDIAIKKNYNLANAYIGKSAAY-RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQ-QAGN--I 133 (228)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH-HTTC--H
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHH-HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHH-Hhcc--H
Confidence 567888899888754 456677777654 55567799999999988743 34 45888888888 4443 6
Q ss_pred HHHHHHHHHhhcc
Q 035556 165 KQGFELLSSLKST 177 (261)
Q Consensus 165 ~~a~~~f~~~~~t 177 (261)
++|++.|.++...
T Consensus 134 ~~A~~~~~~al~~ 146 (228)
T 4i17_A 134 EKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhc
Confidence 7899999998753
No 120
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=66.36 E-value=19 Score=33.55 Aligned_cols=76 Identities=11% Similarity=0.017 Sum_probs=53.1
Q ss_pred CcchHHHHHHHHhcC--CchHHHHHHHHHHhccCCcHHHHHHHHHHhhc--CCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKSG--NPEALYRQGMHDYFSLGLTNSGFRLLKRAADK--KHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rCleaG--NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
.+.+...+.++++.. ++++.+..|... ...++-++|+..+.+|... .++.|.|.+|.+++ ..|. .++|+++|
T Consensus 22 ~~~A~~~~~~Al~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~-~~g~--~~eA~~~~ 97 (477)
T 1wao_1 22 YENAIKFYSQAIELNPSNAIYYGNRSLAY-LRTECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGK--FRAALRDY 97 (477)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HHTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCC--HHHHHHHH
Confidence 456777788777643 456667777653 4556668888888887763 46788888998888 4443 56777788
Q ss_pred HHhh
Q 035556 172 SSLK 175 (261)
Q Consensus 172 ~~~~ 175 (261)
.++.
T Consensus 98 ~~al 101 (477)
T 1wao_1 98 ETVV 101 (477)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7776
No 121
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=66.29 E-value=31 Score=29.13 Aligned_cols=76 Identities=7% Similarity=0.098 Sum_probs=38.4
Q ss_pred chHHHHHHHHhcCCchHHHHHHHHHH--hccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHHH
Q 035556 98 HASLFLMRCKKSGNPEALYRQGMHDY--FSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLSS 173 (261)
Q Consensus 98 ka~~FL~rCleaGNpeA~Y~~Gm~~~--~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~ 173 (261)
.+...+.++++..+..+....+...+ ...++.++|...+.+|.. +.++.+.+.+|.++. -.|. .++|..+|.+
T Consensus 152 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~g~--~~~A~~~~~~ 228 (308)
T 2ond_A 152 SGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS-HLNE--DNNTRVLFER 228 (308)
T ss_dssp HHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTCC--HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HCCC--HHHHHHHHHH
Confidence 34445555555433333222222222 234555666666666543 445566666666665 3332 4566666666
Q ss_pred hhc
Q 035556 174 LKS 176 (261)
Q Consensus 174 ~~~ 176 (261)
+..
T Consensus 229 al~ 231 (308)
T 2ond_A 229 VLT 231 (308)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 122
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=66.17 E-value=25 Score=30.21 Aligned_cols=76 Identities=13% Similarity=-0.015 Sum_probs=42.9
Q ss_pred CcchHHHHHHHHhcC--CchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKSG--NPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rCleaG--NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
...+...+.++++.. ++++.+..|.. +...++.++|...+.+|.. +.++.+.+.+|.++. -.|. .++|+++|
T Consensus 253 ~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~--~~~A~~~~ 328 (388)
T 1w3b_A 253 IDLAIDTYRRAIELQPHFPDAYCNLANA-LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR-EQGN--IEEAVRLY 328 (388)
T ss_dssp HHHHHHHHHHHHHTCSSCHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH-HcCC--HHHHHHHH
Confidence 345666677666532 34555555543 2344555667777666654 334566666666666 3332 45566666
Q ss_pred HHhh
Q 035556 172 SSLK 175 (261)
Q Consensus 172 ~~~~ 175 (261)
.++.
T Consensus 329 ~~al 332 (388)
T 1w3b_A 329 RKAL 332 (388)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6654
No 123
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=66.09 E-value=28 Score=27.10 Aligned_cols=76 Identities=16% Similarity=0.278 Sum_probs=43.7
Q ss_pred CcchHHHHHHHHhcC--CchHHHHHHHHHHhccCCcHHHHHHHHHHhhc--CCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKSG--NPEALYRQGMHDYFSLGLTNSGFRLLKRAADK--KHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rCleaG--NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
...+..++.++++.. ++++.+..|... ...++.++|+.++.+|... .+..+.+.+|.+++ -.|. .++|+++|
T Consensus 107 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~--~~~A~~~~ 182 (243)
T 2q7f_A 107 YKEAKDMFEKALRAGMENGDLFYMLGTVL-VKLEQPKLALPYLQRAVELNENDTEARFQFGMCLA-NEGM--LDEALSQF 182 (243)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHH-HHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTC--CHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HcCC--HHHHHHHH
Confidence 445666666666544 445555555432 3445557777777776543 34666677777776 3332 34566666
Q ss_pred HHhh
Q 035556 172 SSLK 175 (261)
Q Consensus 172 ~~~~ 175 (261)
.++.
T Consensus 183 ~~~~ 186 (243)
T 2q7f_A 183 AAVT 186 (243)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 124
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=65.94 E-value=25 Score=29.55 Aligned_cols=30 Identities=13% Similarity=0.167 Sum_probs=13.9
Q ss_pred CCcHHHHHHHHHHhh--cCCchhHHHHHHHHH
Q 035556 127 GLTNSGFRLLKRAAD--KKHPEATYVYTIIML 156 (261)
Q Consensus 127 ~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l 156 (261)
++.++|+..+.+|.. +.++.+.+.+|.+++
T Consensus 265 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 296 (368)
T 1fch_A 265 NQSEEAVAAYRRALELQPGYIRSRYNLGISCI 296 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 344455555554433 223444555555555
No 125
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=65.91 E-value=21 Score=27.81 Aligned_cols=78 Identities=17% Similarity=0.267 Sum_probs=56.4
Q ss_pred CCcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhhc--CCchhHHHHHHHHHhccCcchHHHHHHH
Q 035556 95 TDRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAADK--KHPEATYVYTIIMLLCCGSQFKKQGFEL 170 (261)
Q Consensus 95 ~~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--G~~~A~Y~lgmL~l~~~G~e~~~~a~~~ 170 (261)
....+...+.++++. .++++.+..|... +..++.++|+..+.++... .++.+.+.+|.+++ -.|. .++|+++
T Consensus 140 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~--~~~A~~~ 215 (243)
T 2q7f_A 140 QPKLALPYLQRAVELNENDTEARFQFGMCL-ANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYA-YKEN--REKALEM 215 (243)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--TTHHHHH
T ss_pred cHHHHHHHHHHHHHhCCccHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HccC--HHHHHHH
Confidence 345677788888765 4566777766654 4556668999999998764 46788999999998 4443 4568888
Q ss_pred HHHhhc
Q 035556 171 LSSLKS 176 (261)
Q Consensus 171 f~~~~~ 176 (261)
|.++..
T Consensus 216 ~~~~~~ 221 (243)
T 2q7f_A 216 LDKAID 221 (243)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 887764
No 126
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=65.74 E-value=28 Score=29.72 Aligned_cols=76 Identities=9% Similarity=-0.036 Sum_probs=40.2
Q ss_pred CcchHHHHHHHHhcCCchHH-HH--HHHHHHh-ccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHH
Q 035556 96 DRHASLFLMRCKKSGNPEAL-YR--QGMHDYF-SLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFE 169 (261)
Q Consensus 96 ~~ka~~FL~rCleaGNpeA~-Y~--~Gm~~~~-~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~ 169 (261)
.+.+...+.++++.. |+.. +. .+...+. ..+..++|+..+.++.. +.++.+.+++|++++ ..|. .++|.+
T Consensus 146 ~~~A~~~l~~~~~~~-p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~--~~eA~~ 221 (291)
T 3mkr_A 146 LDLARKELKKMQDQD-EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHM-AQGR--WEAAEG 221 (291)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HTTC--HHHHHH
T ss_pred HHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCC--HHHHHH
Confidence 445666677766643 3322 22 2333332 22344677777766654 335566666777666 4443 445656
Q ss_pred HHHHhh
Q 035556 170 LLSSLK 175 (261)
Q Consensus 170 ~f~~~~ 175 (261)
.|.++.
T Consensus 222 ~l~~al 227 (291)
T 3mkr_A 222 VLQEAL 227 (291)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=65.44 E-value=18 Score=30.76 Aligned_cols=62 Identities=13% Similarity=-0.070 Sum_probs=47.7
Q ss_pred CCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHHHhh
Q 035556 110 GNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLSSLK 175 (261)
Q Consensus 110 GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~ 175 (261)
.++++.+.+|... +..++-++|+..+.+|.. +.++.+.+++|.+++ ..|. .++|+++|.++.
T Consensus 2 ~~a~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~--~~~A~~~~~~al 65 (281)
T 2c2l_A 2 PSAQELKEQGNRL-FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQ--PEQALADCRRAL 65 (281)
T ss_dssp CCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTC--HHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcC--HHHHHHHHHHHH
Confidence 3567788888755 456677999999999875 457889999999999 5543 567888888875
No 128
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=65.43 E-value=33 Score=27.95 Aligned_cols=47 Identities=11% Similarity=-0.009 Sum_probs=21.3
Q ss_pred cCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHHHhh
Q 035556 126 LGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLSSLK 175 (261)
Q Consensus 126 ~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~ 175 (261)
.++.++|+..+.+|.. +.+..+.+.+|.+++ -.|. .++|+++|.++.
T Consensus 219 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~g~--~~~A~~~~~~a~ 267 (327)
T 3cv0_A 219 GNRPQEALDAYNRALDINPGYVRVMYNMAVSYS-NMSQ--YDLAAKQLVRAI 267 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-Hhcc--HHHHHHHHHHHH
Confidence 3344555555555443 223445555555555 2222 334444444443
No 129
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=63.96 E-value=9.8 Score=33.65 Aligned_cols=79 Identities=10% Similarity=0.025 Sum_probs=42.8
Q ss_pred CCcchHHHHHHHHhcCCch-----HHHHHHHHHHhccCCcHHHHHHHHHHhh--------------------------cC
Q 035556 95 TDRHASLFLMRCKKSGNPE-----ALYRQGMHDYFSLGLTNSGFRLLKRAAD--------------------------KK 143 (261)
Q Consensus 95 ~~~ka~~FL~rCleaGNpe-----A~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--------------------------~G 143 (261)
....+...+.++++...+. ..+..|....+..++.++|+..+.+|.. +.
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~ 428 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGA 428 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3456777888887643221 2455565566677777777777776643 44
Q ss_pred CchhHHHHHHHHHhccCcchHHHHHHHHHHhhc
Q 035556 144 HPEATYVYTIIMLLCCGSQFKKQGFELLSSLKS 176 (261)
Q Consensus 144 ~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~~ 176 (261)
++.|.+.+|.++. -.|. .++|+++|.++..
T Consensus 429 ~~~~~~~LG~~~~-~~g~--~~~A~~~y~kALe 458 (472)
T 4g1t_A 429 DSEALHVLAFLQE-LNEK--MQQADEDSERGLE 458 (472)
T ss_dssp CTTHHHHHHHHHH-HHHH--CC-----------
T ss_pred CHHHHHHHHHHHH-HcCC--HHHHHHHHHHHHh
Confidence 6778888998888 3332 4568888887764
No 130
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=63.90 E-value=14 Score=36.09 Aligned_cols=62 Identities=16% Similarity=0.073 Sum_probs=49.0
Q ss_pred hcCCchHHHHHHHHHHhccCCcHHHHHHHHHHh--------h--cCCchhHHHHHHHHHhccCcchHHHHHHHHHHhhc
Q 035556 108 KSGNPEALYRQGMHDYFSLGLTNSGFRLLKRAA--------D--KKHPEATYVYTIIMLLCCGSQFKKQGFELLSSLKS 176 (261)
Q Consensus 108 eaGNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA--------~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~~ 176 (261)
+-+||++.|..| +..++.++|++.+.+|. . +.+..|.+.+|.+++ -.|. .++|++.|.++..
T Consensus 390 ~p~~~~a~~~~a----~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~-~~g~--~~~A~~~~~~al~ 461 (681)
T 2pzi_A 390 DPTDVAASVLQA----TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALL-DLGD--VAKATRKLDDLAE 461 (681)
T ss_dssp CTTSTTHHHHHH----TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHH-HHTC--HHHHHHHHHHHHH
T ss_pred CCCCcchHHhhc----ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHH-hcCC--HHHHHHHHHHHhc
Confidence 347888888877 67778899999999987 2 557899999999999 4443 5678888888873
No 131
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=63.87 E-value=12 Score=31.78 Aligned_cols=45 Identities=11% Similarity=0.187 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHh--hcCCchhHHHHHHHHHhccCcchHHHHHHHHHHhhc
Q 035556 129 TNSGFRLLKRAA--DKKHPEATYVYTIIMLLCCGSQFKKQGFELLSSLKS 176 (261)
Q Consensus 129 ~~~Gl~lL~~AA--~~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~~ 176 (261)
...++..|.+|. .+.++.|.|++|.+++ ..|. .++|++.|.++..
T Consensus 201 ~~~a~~~l~~al~~~P~~~~~~~~la~~l~-~~g~--~~~A~~~l~~~l~ 247 (287)
T 3qou_A 201 DTPEIQQLQQQVAENPEDAALATQLALQLH-QVGR--NEEALELLFGHLR 247 (287)
T ss_dssp SCHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHhcCCccHHHHHHHHHHHH-Hccc--HHHHHHHHHHHHh
Confidence 344566666654 4567899999999999 5543 5678888887764
No 132
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=63.74 E-value=27 Score=32.49 Aligned_cols=80 Identities=11% Similarity=0.004 Sum_probs=58.8
Q ss_pred CCcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCc-chHHHHHH
Q 035556 95 TDRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGS-QFKKQGFE 169 (261)
Q Consensus 95 ~~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~-e~~~~a~~ 169 (261)
..+.+...+.++++. .++++.+..|... ...++.++|...+.+|.. +.+..+.+.+|.++. -.+. .+.++|++
T Consensus 72 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~g~~~~A~~ 149 (568)
T 2vsy_A 72 RHAEAAVLLQQASDAAPEHPGIALWLGHAL-EDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRR-RLCDWRALDVLSA 149 (568)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCTTHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhhccccHHHHHH
Confidence 356777888888764 4566777777654 456667899999999866 456788999999998 4421 23678999
Q ss_pred HHHHhhc
Q 035556 170 LLSSLKS 176 (261)
Q Consensus 170 ~f~~~~~ 176 (261)
.|.++..
T Consensus 150 ~~~~al~ 156 (568)
T 2vsy_A 150 QVRAAVA 156 (568)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998875
No 133
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=63.67 E-value=15 Score=34.20 Aligned_cols=78 Identities=17% Similarity=0.182 Sum_probs=59.5
Q ss_pred CCcchHHHHHHHHhcC--CchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHH
Q 035556 95 TDRHASLFLMRCKKSG--NPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFEL 170 (261)
Q Consensus 95 ~~~ka~~FL~rCleaG--NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~ 170 (261)
+...+...+.++++.. ++++.+..|... ...++.++|+..+.+|.. +.++.+.+.+|.+++ -.|. .++|+++
T Consensus 38 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~--~~~A~~~ 113 (568)
T 2vsy_A 38 DTTAGEMAVQRGLALHPGHPEAVARLGRVR-WTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALE-DAGQ--AEAAAAA 113 (568)
T ss_dssp CHHHHHHHHHHHHTTSTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCC--HHHHHHH
Confidence 3467888899888753 566777777754 455677999999999866 456889999999999 4443 5788899
Q ss_pred HHHhhc
Q 035556 171 LSSLKS 176 (261)
Q Consensus 171 f~~~~~ 176 (261)
|.++..
T Consensus 114 ~~~al~ 119 (568)
T 2vsy_A 114 YTRAHQ 119 (568)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998874
No 134
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=63.36 E-value=34 Score=28.62 Aligned_cols=76 Identities=4% Similarity=-0.080 Sum_probs=53.2
Q ss_pred cchHHHHHHHHhcCCc----hHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHH
Q 035556 97 RHASLFLMRCKKSGNP----EALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFEL 170 (261)
Q Consensus 97 ~ka~~FL~rCleaGNp----eA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~ 170 (261)
..+...+.++++..+. .+.+..|... ...++.++|+..+.+|.. +.++.+.+.+|.++. -.|. .++|+++
T Consensus 198 ~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~g~--~~~A~~~ 273 (368)
T 1fch_A 198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLF-NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA-NGNQ--SEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHSTTSCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcccHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HcCC--HHHHHHH
Confidence 3456677777765433 4555555443 456777999999999875 446788999999999 4443 6678888
Q ss_pred HHHhhc
Q 035556 171 LSSLKS 176 (261)
Q Consensus 171 f~~~~~ 176 (261)
|.++..
T Consensus 274 ~~~al~ 279 (368)
T 1fch_A 274 YRRALE 279 (368)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888763
No 135
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=62.83 E-value=21 Score=25.77 Aligned_cols=61 Identities=10% Similarity=0.051 Sum_probs=45.1
Q ss_pred CchHHHHHHHHHHhccCCcHHHHHHHHHHhhc---------CCchhHHHHHHHHHhccCcchHHHHHHHHHHhh
Q 035556 111 NPEALYRQGMHDYFSLGLTNSGFRLLKRAADK---------KHPEATYVYTIIMLLCCGSQFKKQGFELLSSLK 175 (261)
Q Consensus 111 NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~---------G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~ 175 (261)
+++-||..|... +..++-..|..++.+|... ..+...+.||..++ -.|. .++|++++..+.
T Consensus 4 sa~dc~~lG~~~-~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~-~~g~--~~~A~~~~~~al 73 (104)
T 2v5f_A 4 TAEDCFELGKVA-YTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-QQGD--LDKALLLTKKLL 73 (104)
T ss_dssp CHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-HTTC--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHH-HccC--HHHHHHHHHHHH
Confidence 567788888754 5566668999999998873 23556778888888 5553 678888888886
No 136
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=62.17 E-value=15 Score=32.34 Aligned_cols=62 Identities=11% Similarity=0.039 Sum_probs=42.7
Q ss_pred chHHHHHHHHHHh--ccCCcHHHHHHHHHHhh----------------cCCchhHHHHHHHHHhccCcchHHHHHHHHHH
Q 035556 112 PEALYRQGMHDYF--SLGLTNSGFRLLKRAAD----------------KKHPEATYVYTIIMLLCCGSQFKKQGFELLSS 173 (261)
Q Consensus 112 peA~Y~~Gm~~~~--~~~~~~~Gl~lL~~AA~----------------~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~ 173 (261)
+++.+..|+..+. ..++.++|+.++.++.. ..++.+.+.+|.+++ -.|. .++|+++|.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~A~~~~~~ 262 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF-LKND--PLGAHEDIKK 262 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH-HSSC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH-HCCC--HHHHHHHHHH
Confidence 6666777776654 35666888888888776 445677788888887 4443 5667777777
Q ss_pred hhc
Q 035556 174 LKS 176 (261)
Q Consensus 174 ~~~ 176 (261)
+..
T Consensus 263 ~l~ 265 (514)
T 2gw1_A 263 AIE 265 (514)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 137
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=61.37 E-value=27 Score=28.01 Aligned_cols=80 Identities=15% Similarity=0.076 Sum_probs=56.6
Q ss_pred CcchHHHHHHHHhcC--C---chHHHHHHHHHHhccCCcHHHHHHHHHHhhc--CCch---hHHHHHHHHHh-c------
Q 035556 96 DRHASLFLMRCKKSG--N---PEALYRQGMHDYFSLGLTNSGFRLLKRAADK--KHPE---ATYVYTIIMLL-C------ 158 (261)
Q Consensus 96 ~~ka~~FL~rCleaG--N---peA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--G~~~---A~Y~lgmL~l~-~------ 158 (261)
...+...|...++.. + +++.|..|.. ++..++-++|+..+.++... .++. |.|.+|+++.+ +
T Consensus 20 ~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~-~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~ 98 (225)
T 2yhc_A 20 WRQAITQLEALDNRYPFGPYSQQVQLDLIYA-YYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQG 98 (225)
T ss_dssp HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhh
Confidence 456778888888642 2 2578888854 56677889999999998763 3443 88999999873 1
Q ss_pred -----c---CcchHHHHHHHHHHhhc
Q 035556 159 -----C---GSQFKKQGFELLSSLKS 176 (261)
Q Consensus 159 -----~---G~e~~~~a~~~f~~~~~ 176 (261)
. .....++|++.|.++.+
T Consensus 99 ~~~~~~~~~~~~~~~~A~~~~~~~l~ 124 (225)
T 2yhc_A 99 FFGVDRSDRDPQQARAAFSDFSKLVR 124 (225)
T ss_dssp ---------CCHHHHHHHHHHHHHHT
T ss_pred hhccchhhcCcHHHHHHHHHHHHHHH
Confidence 0 11247889999998874
No 138
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=60.89 E-value=38 Score=29.34 Aligned_cols=77 Identities=13% Similarity=0.089 Sum_probs=55.9
Q ss_pred CcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhhc--CCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAADK--KHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
...+...+..+++. .++.+.+..|... +..++.++|+..+.+|... .+..+.+.+|.++. -.|. .++|+++|
T Consensus 42 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~--~~~A~~~~ 117 (450)
T 2y4t_A 42 LADALSQFHAAVDGDPDNYIAYYRRATVF-LAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL-KQGK--LDEAEDDF 117 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HcCC--HHHHHHHH
Confidence 44677777777764 4566777777654 4556778999999998764 46788899999998 4443 56788888
Q ss_pred HHhhc
Q 035556 172 SSLKS 176 (261)
Q Consensus 172 ~~~~~ 176 (261)
.++..
T Consensus 118 ~~~~~ 122 (450)
T 2y4t_A 118 KKVLK 122 (450)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88864
No 139
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=60.64 E-value=27 Score=32.14 Aligned_cols=77 Identities=9% Similarity=-0.049 Sum_probs=54.6
Q ss_pred CcchHHHHHHHHhc--CC---------------chHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHH
Q 035556 96 DRHASLFLMRCKKS--GN---------------PEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIML 156 (261)
Q Consensus 96 ~~ka~~FL~rClea--GN---------------peA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l 156 (261)
...+...|.++++. .+ ..+.+.+|+.. +..++-++|+..+.+|.. +.++.|.|.+|.+++
T Consensus 284 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~-~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~ 362 (457)
T 1kt0_A 284 YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY-LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL 362 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 34566677777653 23 35666666654 456666899999998876 557889999999999
Q ss_pred hccCcchHHHHHHHHHHhhc
Q 035556 157 LCCGSQFKKQGFELLSSLKS 176 (261)
Q Consensus 157 ~~~G~e~~~~a~~~f~~~~~ 176 (261)
..|. .++|++.|.++..
T Consensus 363 -~~g~--~~~A~~~~~~al~ 379 (457)
T 1kt0_A 363 -LMNE--FESAKGDFEKVLE 379 (457)
T ss_dssp -HTTC--HHHHHHHHHHHHT
T ss_pred -HccC--HHHHHHHHHHHHH
Confidence 5553 5678888888863
No 140
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=58.49 E-value=50 Score=26.83 Aligned_cols=76 Identities=9% Similarity=0.027 Sum_probs=54.3
Q ss_pred cchHHHHHHHHhcC--CchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHH
Q 035556 97 RHASLFLMRCKKSG--NPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLS 172 (261)
Q Consensus 97 ~ka~~FL~rCleaG--NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~ 172 (261)
..+...+..+++.. ++++.+..|... ...++.++|+..+.+|.. +.++.+.+.+|.++. -.|. .++|+++|.
T Consensus 155 ~~A~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~--~~~A~~~~~ 230 (327)
T 3cv0_A 155 RECRTLLHAALEMNPNDAQLHASLGVLY-NLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLA-NGNR--PQEALDAYN 230 (327)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCC--HHHHHHHHH
Confidence 45666777777654 456666666543 456677999999999875 346788999999999 4443 567888888
Q ss_pred Hhhc
Q 035556 173 SLKS 176 (261)
Q Consensus 173 ~~~~ 176 (261)
++..
T Consensus 231 ~a~~ 234 (327)
T 3cv0_A 231 RALD 234 (327)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8763
No 141
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=58.01 E-value=52 Score=28.48 Aligned_cols=77 Identities=8% Similarity=-0.098 Sum_probs=53.7
Q ss_pred CcchHHHHHHHHhcCCch------HHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHH
Q 035556 96 DRHASLFLMRCKKSGNPE------ALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQG 167 (261)
Q Consensus 96 ~~ka~~FL~rCleaGNpe------A~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a 167 (261)
...+...+..+++..+.. +.+..|. .+...++.++|+..+.+|.. +.++.+.+.+|.++. -.|. .++|
T Consensus 273 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~-~~~~--~~~A 348 (450)
T 2y4t_A 273 YTDATSKYESVMKTEPSIAEYTVRSKERICH-CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL-IEEM--YDEA 348 (450)
T ss_dssp HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH-HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHH
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HhcC--HHHH
Confidence 345667777777643322 3333343 34566777999999999874 557899999999999 4443 6788
Q ss_pred HHHHHHhhc
Q 035556 168 FELLSSLKS 176 (261)
Q Consensus 168 ~~~f~~~~~ 176 (261)
+++|.++..
T Consensus 349 ~~~~~~al~ 357 (450)
T 2y4t_A 349 IQDYETAQE 357 (450)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 888998864
No 142
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=57.23 E-value=53 Score=29.73 Aligned_cols=59 Identities=8% Similarity=-0.008 Sum_probs=28.1
Q ss_pred chHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHH-----HHHHHHHhh--cCCchhHHHHHHHHH
Q 035556 98 HASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSG-----FRLLKRAAD--KKHPEATYVYTIIML 156 (261)
Q Consensus 98 ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~G-----l~lL~~AA~--~G~~~A~Y~lgmL~l 156 (261)
.+..++.++++. .|+.|.+.+|..+.-..+..+++ +..+.+|.. +.+..|.+.+|.++.
T Consensus 218 eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~ 285 (382)
T 2h6f_A 218 NELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ 285 (382)
T ss_dssp THHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 455555555542 34555555555544322222333 344444432 344555566665555
No 143
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=56.19 E-value=60 Score=26.59 Aligned_cols=75 Identities=16% Similarity=0.092 Sum_probs=36.4
Q ss_pred cchHHHHHHHHhcC--CchHHHHHHHHHHhccCCcHHHHHHHHHHhhc--CCchhHHHHHHHHHhccCcchHHHHHHHHH
Q 035556 97 RHASLFLMRCKKSG--NPEALYRQGMHDYFSLGLTNSGFRLLKRAADK--KHPEATYVYTIIMLLCCGSQFKKQGFELLS 172 (261)
Q Consensus 97 ~ka~~FL~rCleaG--NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~ 172 (261)
..+...+..+++.. ++++.+..|... ...++.++|+..+.++... .++.+.+.+|.+++ -.|. .++|+++|.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~--~~~A~~~~~ 212 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECF-IKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYY-QLGD--HELSLSEVR 212 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHH-HHTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCC--HHHHHHHHH
Confidence 34444455544432 333333333322 3344446666666665542 34556666666666 2222 445666666
Q ss_pred Hhh
Q 035556 173 SLK 175 (261)
Q Consensus 173 ~~~ 175 (261)
++.
T Consensus 213 ~a~ 215 (359)
T 3ieg_A 213 ECL 215 (359)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
No 144
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=55.06 E-value=24 Score=32.52 Aligned_cols=76 Identities=9% Similarity=0.010 Sum_probs=56.7
Q ss_pred cchHHHHHHHHhc--CCchHHHHHHHHHHhc---c----CCcHHHHHHHHHHhh--c---CCchhHHHHHHHHHhccCcc
Q 035556 97 RHASLFLMRCKKS--GNPEALYRQGMHDYFS---L----GLTNSGFRLLKRAAD--K---KHPEATYVYTIIMLLCCGSQ 162 (261)
Q Consensus 97 ~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~---~----~~~~~Gl~lL~~AA~--~---G~~~A~Y~lgmL~l~~~G~e 162 (261)
..+...+.++++. .|+++.+.+|...+.. . ++.++|+..+.+|.. + .++.+.+.+|.++. -.|.
T Consensus 196 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~-~~g~- 273 (474)
T 4abn_A 196 MDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHK-YEES- 273 (474)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHH-HTTC-
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHH-HcCC-
Confidence 4567778887754 5677888888876532 1 445899999999876 3 57899999999999 4443
Q ss_pred hHHHHHHHHHHhh
Q 035556 163 FKKQGFELLSSLK 175 (261)
Q Consensus 163 ~~~~a~~~f~~~~ 175 (261)
.++|++.|.++.
T Consensus 274 -~~~A~~~~~~al 285 (474)
T 4abn_A 274 -YGEALEGFSQAA 285 (474)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHH
Confidence 567888888875
No 145
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=52.68 E-value=79 Score=24.51 Aligned_cols=75 Identities=5% Similarity=-0.139 Sum_probs=50.9
Q ss_pred chHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHHH
Q 035556 98 HASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLSS 173 (261)
Q Consensus 98 ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~ 173 (261)
.+...+...+.. .++++.+..|... +..++.++|+..+.+|.. +.++.+.+.+|.+++ -.|. .++|+++|.+
T Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~--~~~A~~~~~~ 198 (258)
T 3uq3_A 123 KELKKAEAEAYVNPEKAEEARLEGKEY-FTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA-KLMS--FPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HhCC--HHHHHHHHHH
Confidence 444455555443 2345566666554 455777999999999876 446788999999998 4443 5678888888
Q ss_pred hhc
Q 035556 174 LKS 176 (261)
Q Consensus 174 ~~~ 176 (261)
+..
T Consensus 199 al~ 201 (258)
T 3uq3_A 199 AIE 201 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 146
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=51.88 E-value=58 Score=23.56 Aligned_cols=76 Identities=12% Similarity=0.050 Sum_probs=50.3
Q ss_pred CcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhhc--CCchhHHHHHHH--HHhccCcchHHHHHH
Q 035556 96 DRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAADK--KHPEATYVYTII--MLLCCGSQFKKQGFE 169 (261)
Q Consensus 96 ~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--G~~~A~Y~lgmL--~l~~~G~e~~~~a~~ 169 (261)
...+..++.++++. .++++.+..|... ...++.++|...+.+|... .+..+.+.+++. ++ .. ...++|++
T Consensus 63 ~~~A~~~~~~a~~~~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~-~~--~~~~~A~~ 138 (166)
T 1a17_A 63 YGYALGDATRAIELDKKYIKGYYRRAASN-MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV-KQ--KAFERAIA 138 (166)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-HH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HH--HHHHHHHH
Confidence 45677888888764 4567777777653 5567779999999998764 355566444444 44 22 23667777
Q ss_pred HHHHhh
Q 035556 170 LLSSLK 175 (261)
Q Consensus 170 ~f~~~~ 175 (261)
++..+.
T Consensus 139 ~~~~~~ 144 (166)
T 1a17_A 139 GDEHKR 144 (166)
T ss_dssp HHHHHH
T ss_pred cccchH
Confidence 777654
No 147
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=51.25 E-value=62 Score=28.34 Aligned_cols=76 Identities=13% Similarity=0.021 Sum_probs=53.9
Q ss_pred CcchHHHHHHHHhcC-CchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHH
Q 035556 96 DRHASLFLMRCKKSG-NPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLS 172 (261)
Q Consensus 96 ~~ka~~FL~rCleaG-NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~ 172 (261)
...+...+.++++.. |+.+.+..|.. ++..++.++|+..+.+|.. +.+..|.+.+|.+++ -.|. .++|++.|.
T Consensus 22 ~~~A~~~~~~al~~~p~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~--~~~A~~~~~ 97 (514)
T 2gw1_A 22 YDDAIKYYNWALELKEDPVFYSNLSAC-YVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE-GLGK--FADAMFDLS 97 (514)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccHHHHHhHHHH-HHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH-HHhh--HHHHHHHHH
Confidence 456777888888744 33344444443 3566777999999998765 456789999999999 4443 567888888
Q ss_pred Hhh
Q 035556 173 SLK 175 (261)
Q Consensus 173 ~~~ 175 (261)
++.
T Consensus 98 ~~~ 100 (514)
T 2gw1_A 98 VLS 100 (514)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 148
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=51.24 E-value=74 Score=27.11 Aligned_cols=75 Identities=15% Similarity=0.133 Sum_probs=40.2
Q ss_pred cchHHHHHHHHhcC--CchHHHHHHHHHHhccCCcHHHHHHHHHHhhc--CCchhHHHHHHHHHhccCcchHHHHHHHHH
Q 035556 97 RHASLFLMRCKKSG--NPEALYRQGMHDYFSLGLTNSGFRLLKRAADK--KHPEATYVYTIIMLLCCGSQFKKQGFELLS 172 (261)
Q Consensus 97 ~ka~~FL~rCleaG--NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~ 172 (261)
..+...+.++++.. ++.+.+..|.. +...++.++|+..+.+|... .++.+.+.+|.++. -.|. .++|+++|.
T Consensus 220 ~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~--~~~A~~~~~ 295 (388)
T 1w3b_A 220 DRAVAAYLRALSLSPNHAVVHGNLACV-YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK-EKGS--VAEAEDCYN 295 (388)
T ss_dssp THHHHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH-HHSC--HHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCC--HHHHHHHHH
Confidence 34445555554432 23444444432 23445556777777776553 34566777777766 3332 455666666
Q ss_pred Hhh
Q 035556 173 SLK 175 (261)
Q Consensus 173 ~~~ 175 (261)
++.
T Consensus 296 ~al 298 (388)
T 1w3b_A 296 TAL 298 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 149
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=49.22 E-value=78 Score=25.02 Aligned_cols=73 Identities=10% Similarity=-0.006 Sum_probs=50.8
Q ss_pred HHHHHHHHh--cCCchHHHHHHHHHHhccC--CcHHHHHHHHHHhhcC----CchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 100 SLFLMRCKK--SGNPEALYRQGMHDYFSLG--LTNSGFRLLKRAADKK----HPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 100 ~~FL~rCle--aGNpeA~Y~~Gm~~~~~~~--~~~~Gl~lL~~AA~~G----~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
+.-+..-.+ .-++++.|..+.-++-... +...|+.+|..-...+ ..+..|.+|+-++ -.|. ..+|.+++
T Consensus 21 ~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y-klg~--Y~~A~~~~ 97 (126)
T 1nzn_A 21 EKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKE--YEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH-HTTC--HHHHHHHH
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-Hhhh--HHHHHHHH
Confidence 333444444 3467888888887775443 3467999999988776 3578999999998 5554 55677777
Q ss_pred HHhh
Q 035556 172 SSLK 175 (261)
Q Consensus 172 ~~~~ 175 (261)
..+.
T Consensus 98 ~~lL 101 (126)
T 1nzn_A 98 RGLL 101 (126)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7766
No 150
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=49.14 E-value=45 Score=28.77 Aligned_cols=77 Identities=21% Similarity=0.216 Sum_probs=53.6
Q ss_pred CCcchHHHHHHHHhc----CCc----hHHHHHHHHHHhccCCcHHHHHHHHHHhh--------cCCchhHHHHHHHHHhc
Q 035556 95 TDRHASLFLMRCKKS----GNP----EALYRQGMHDYFSLGLTNSGFRLLKRAAD--------KKHPEATYVYTIIMLLC 158 (261)
Q Consensus 95 ~~~ka~~FL~rClea----GNp----eA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--------~G~~~A~Y~lgmL~l~~ 158 (261)
..+.+...+.++++- +++ .+.+..|... ...++.++|+..+.+|.. .+.+.+.+.+|.+++ -
T Consensus 199 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~ 276 (383)
T 3ulq_A 199 QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCK-NSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHY-K 276 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH-H
T ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH-H
Confidence 345677777777653 333 2556666543 456677999999999887 456778999999999 5
Q ss_pred cCcchHHHHHHHHHHhh
Q 035556 159 CGSQFKKQGFELLSSLK 175 (261)
Q Consensus 159 ~G~e~~~~a~~~f~~~~ 175 (261)
.|. .++|+++|.++.
T Consensus 277 ~g~--~~~A~~~~~~al 291 (383)
T 3ulq_A 277 LGK--IDKAHEYHSKGM 291 (383)
T ss_dssp TTC--HHHHHHHHHHHH
T ss_pred CCC--HHHHHHHHHHHH
Confidence 553 567777777765
No 151
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=48.94 E-value=61 Score=29.36 Aligned_cols=77 Identities=10% Similarity=0.025 Sum_probs=50.9
Q ss_pred CcchHHHHHHHHhcC-----Cch----HHHHHHHHHHhccCCcHHHHHHHHHHhhc--CCchhHHHHHHHHHhccCcchH
Q 035556 96 DRHASLFLMRCKKSG-----NPE----ALYRQGMHDYFSLGLTNSGFRLLKRAADK--KHPEATYVYTIIMLLCCGSQFK 164 (261)
Q Consensus 96 ~~ka~~FL~rCleaG-----Npe----A~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--G~~~A~Y~lgmL~l~~~G~e~~ 164 (261)
.+.+..++.++++.. +|+ +.+..|. .+...++.++|...+.++... .++.+.+.+|.++. -.|. .
T Consensus 491 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~--~ 566 (597)
T 2xpi_A 491 MQTAINHFQNALLLVKKTQSNEKPWAATWANLGH-AYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYL-HKKI--P 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH-HTTC--H
T ss_pred HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhCC--H
Confidence 456777777777642 444 3333332 335567778899998887653 36778888888888 4443 5
Q ss_pred HHHHHHHHHhhc
Q 035556 165 KQGFELLSSLKS 176 (261)
Q Consensus 165 ~~a~~~f~~~~~ 176 (261)
++|+++|.++.+
T Consensus 567 ~~A~~~~~~~l~ 578 (597)
T 2xpi_A 567 GLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 678888887764
No 152
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=48.71 E-value=27 Score=30.24 Aligned_cols=76 Identities=9% Similarity=0.100 Sum_probs=44.1
Q ss_pred CcchHHHHHHHHhc----C----CchHHHHHHHHHHhccCCcHHHHHHHHHHhhc---------CCchhHHHHHHHHHhc
Q 035556 96 DRHASLFLMRCKKS----G----NPEALYRQGMHDYFSLGLTNSGFRLLKRAADK---------KHPEATYVYTIIMLLC 158 (261)
Q Consensus 96 ~~ka~~FL~rClea----G----NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~---------G~~~A~Y~lgmL~l~~ 158 (261)
...+..++.++++. + .+++.+..|...+ ..++.+.|+.++.+|..- +.+.+.+++|.++. -
T Consensus 119 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~-~ 196 (383)
T 3ulq_A 119 YLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY-YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL-D 196 (383)
T ss_dssp HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH-H
Confidence 45566677777653 2 2355666665433 355557777777776642 22456777777777 4
Q ss_pred cCcchHHHHHHHHHHhh
Q 035556 159 CGSQFKKQGFELLSSLK 175 (261)
Q Consensus 159 ~G~e~~~~a~~~f~~~~ 175 (261)
.|. .++|+++|.++.
T Consensus 197 ~g~--~~~A~~~~~~al 211 (383)
T 3ulq_A 197 LKQ--YEDAISHFQKAY 211 (383)
T ss_dssp TTC--HHHHHHHHHHHH
T ss_pred hcC--HHHHHHHHHHHH
Confidence 332 445555555554
No 153
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=48.36 E-value=61 Score=29.36 Aligned_cols=76 Identities=12% Similarity=-0.012 Sum_probs=37.3
Q ss_pred CcchHHHHHHHHhcC--CchHHHHHHHHHHhccCCcHHHHHHHHHHhhc--CCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKSG--NPEALYRQGMHDYFSLGLTNSGFRLLKRAADK--KHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rCleaG--NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
.+.+...+.++++.. ++++.+..|.. +...++.++|+.++.++... .+..+.+.+|.++. -.|. .++|+++|
T Consensus 389 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~--~~~A~~~~ 464 (597)
T 2xpi_A 389 ISEARRYFSKSSTMDPQFGPAWIGFAHS-FAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHM-QLGN--ILLANEYL 464 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHH-HHTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcCC--HHHHHHHH
Confidence 345556666655432 33344433332 23344556666666665443 24455555555555 2221 44555555
Q ss_pred HHhh
Q 035556 172 SSLK 175 (261)
Q Consensus 172 ~~~~ 175 (261)
.++.
T Consensus 465 ~~~~ 468 (597)
T 2xpi_A 465 QSSY 468 (597)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 154
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=45.59 E-value=45 Score=29.29 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=10.9
Q ss_pred chHHHHHHHHhc--CCchHHHHHHHH
Q 035556 98 HASLFLMRCKKS--GNPEALYRQGMH 121 (261)
Q Consensus 98 ka~~FL~rClea--GNpeA~Y~~Gm~ 121 (261)
++..++.++++- .||++.+..|+.
T Consensus 156 ~A~~~~~kal~~~p~~~~~~~~~~~~ 181 (472)
T 4g1t_A 156 RAKVCFEKALEKKPKNPEFTSGLAIA 181 (472)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 444555555442 344444444443
No 155
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=45.45 E-value=78 Score=28.04 Aligned_cols=75 Identities=15% Similarity=0.028 Sum_probs=55.5
Q ss_pred CcchHHHHHHHHhcC--CchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKSG--NPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rCleaG--NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
...+...+.++++.. |+++.+..|... +..++.++|+..+.+|.. +.++.+.+.+|.+++ -.|. .++|++.|
T Consensus 41 ~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~--~~~A~~~~ 116 (537)
T 3fp2_A 41 FNEAIKYYQYAIELDPNEPVFYSNISACY-ISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE-SLGN--FTDAMFDL 116 (537)
T ss_dssp CC-CHHHHHHHHHHCTTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-HcCC--HHHHHHHH
Confidence 457888888888754 677778777654 456677999999999865 557889999999999 4443 56777777
Q ss_pred HHh
Q 035556 172 SSL 174 (261)
Q Consensus 172 ~~~ 174 (261)
..+
T Consensus 117 ~~~ 119 (537)
T 3fp2_A 117 SVL 119 (537)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 156
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=45.17 E-value=61 Score=26.01 Aligned_cols=76 Identities=12% Similarity=0.052 Sum_probs=48.9
Q ss_pred CcchHHHHHHHHhcCCc------hHHHHHHHHHHhccCCcHHHHHHHHHHhhc--------CCchhHHHHHHHHHhccCc
Q 035556 96 DRHASLFLMRCKKSGNP------EALYRQGMHDYFSLGLTNSGFRLLKRAADK--------KHPEATYVYTIIMLLCCGS 161 (261)
Q Consensus 96 ~~ka~~FL~rCleaGNp------eA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--------G~~~A~Y~lgmL~l~~~G~ 161 (261)
...+..++.++++.... .+.+..|.. ++..++.++++.++.+|... ..+.+.+.+|.++. -.|.
T Consensus 21 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~ 98 (338)
T 3ro2_A 21 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNA-YFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK-VLGN 98 (338)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HTTC
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH-HccC
Confidence 45677788887775332 344455554 35566778999988886543 23667888899888 4443
Q ss_pred chHHHHHHHHHHhh
Q 035556 162 QFKKQGFELLSSLK 175 (261)
Q Consensus 162 e~~~~a~~~f~~~~ 175 (261)
.++|+++|.++.
T Consensus 99 --~~~A~~~~~~al 110 (338)
T 3ro2_A 99 --FDEAIVCCQRHL 110 (338)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHH
Confidence 456666666654
No 157
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=44.67 E-value=50 Score=28.24 Aligned_cols=76 Identities=12% Similarity=0.055 Sum_probs=50.6
Q ss_pred CcchHHHHHHHHhcCCc------hHHHHHHHHHHhccCCcHHHHHHHHHHhhc--------CCchhHHHHHHHHHhccCc
Q 035556 96 DRHASLFLMRCKKSGNP------EALYRQGMHDYFSLGLTNSGFRLLKRAADK--------KHPEATYVYTIIMLLCCGS 161 (261)
Q Consensus 96 ~~ka~~FL~rCleaGNp------eA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--------G~~~A~Y~lgmL~l~~~G~ 161 (261)
...+..++.++++.+.. .+.+..|...+ ..++.++|+.++.+|... ....+.+.+|.++. -.|.
T Consensus 64 ~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~ 141 (411)
T 4a1s_A 64 CRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYF-YLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK-VMGR 141 (411)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTC
T ss_pred HHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHH-HCCC
Confidence 45677788888875433 35666666544 556778999998887643 34678889999998 4443
Q ss_pred chHHHHHHHHHHhh
Q 035556 162 QFKKQGFELLSSLK 175 (261)
Q Consensus 162 e~~~~a~~~f~~~~ 175 (261)
.++|+++|.++.
T Consensus 142 --~~~A~~~~~~al 153 (411)
T 4a1s_A 142 --FDEAAICCERHL 153 (411)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHH
Confidence 455666666554
No 158
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=44.62 E-value=29 Score=26.36 Aligned_cols=60 Identities=7% Similarity=-0.041 Sum_probs=38.2
Q ss_pred chHHHHHHHHHHhccCCcHHHHHHHHHHhh--------cCCchhHHHHHHHHHhccCcchHHHHHHHHHHhh
Q 035556 112 PEALYRQGMHDYFSLGLTNSGFRLLKRAAD--------KKHPEATYVYTIIMLLCCGSQFKKQGFELLSSLK 175 (261)
Q Consensus 112 peA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--------~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~ 175 (261)
+.+.+..|...+ ..++.++|+.++.+|.. .....+.+++|.+++ -.|. .++|+++|.++.
T Consensus 26 ~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~--~~~A~~~~~~al 93 (203)
T 3gw4_A 26 SGARFMLGYVYA-FMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER-MAGN--WDAARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HcCC--HHHHHHHHHHHH
Confidence 345566666544 45566888888888766 223667888899888 4443 445555555554
No 159
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=44.02 E-value=1.1e+02 Score=27.15 Aligned_cols=76 Identities=12% Similarity=0.127 Sum_probs=38.0
Q ss_pred CcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHH
Q 035556 96 DRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELL 171 (261)
Q Consensus 96 ~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f 171 (261)
...+...+.++++. .++++.+..|... ...++.++|...+.+|.. +.+..+.+.+|.+++ -.|. .++|+++|
T Consensus 292 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~--~~~A~~~~ 367 (537)
T 3fp2_A 292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMY-FILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY-KQGK--FTESEAFF 367 (537)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH-HTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCC--HHHHHHHH
Confidence 34455555555543 2344444444432 234444666666666543 234556666666665 3332 44555556
Q ss_pred HHhh
Q 035556 172 SSLK 175 (261)
Q Consensus 172 ~~~~ 175 (261)
.++.
T Consensus 368 ~~~~ 371 (537)
T 3fp2_A 368 NETK 371 (537)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 160
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=43.87 E-value=37 Score=27.42 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=28.8
Q ss_pred CCcchHHHHHHHHhc------C-Cch---HHHHHHHHHHhccCCcHHHHHHHHHHhh
Q 035556 95 TDRHASLFLMRCKKS------G-NPE---ALYRQGMHDYFSLGLTNSGFRLLKRAAD 141 (261)
Q Consensus 95 ~~~ka~~FL~rClea------G-Npe---A~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~ 141 (261)
....+..++.++++. + +|. +.+..|.. +...++.++|..++.+|..
T Consensus 168 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASC-YLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHH-HHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Confidence 345677888888775 2 332 33333433 3555677889999888875
No 161
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=43.55 E-value=47 Score=26.15 Aligned_cols=46 Identities=13% Similarity=0.175 Sum_probs=28.9
Q ss_pred CCcchHHHHHHHHhc------C-Cc---hHHHHHHHHHHhccCCcHHHHHHHHHHhh
Q 035556 95 TDRHASLFLMRCKKS------G-NP---EALYRQGMHDYFSLGLTNSGFRLLKRAAD 141 (261)
Q Consensus 95 ~~~ka~~FL~rClea------G-Np---eA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~ 141 (261)
....+...+.++++. + +| .+.+..|.. +...++.++|..++.++..
T Consensus 142 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 142 KAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASC-YLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-HHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Confidence 345677788887775 1 32 344444433 3455667889988888775
No 162
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=42.42 E-value=14 Score=26.47 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=33.8
Q ss_pred CCcHHHHHHHHHHhhc-----CCchhHHHHHHHHHhccCcchHHHHHHHHHHhhc
Q 035556 127 GLTNSGFRLLKRAADK-----KHPEATYVYTIIMLLCCGSQFKKQGFELLSSLKS 176 (261)
Q Consensus 127 ~~~~~Gl~lL~~AA~~-----G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~~ 176 (261)
++.++|+.++.+|... .++.+.+.+|.+++ -.|. .++|+++|.++..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~-~~~~--~~~A~~~~~~al~ 55 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFR-TLGE--YRKAEAVLANGVK 55 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHH-HTTC--HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH-HcCC--HHHHHHHHHHHHH
Confidence 3446788888888765 34788999999999 4443 6788888988863
No 163
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=41.09 E-value=1.4e+02 Score=24.77 Aligned_cols=77 Identities=8% Similarity=-0.032 Sum_probs=50.2
Q ss_pred CCcchHHHHHHHHhc----CCc----hHHHHHHHHHHhccCCcHHHHHHHHHHh---hc--CC----chhHHHHHHHHHh
Q 035556 95 TDRHASLFLMRCKKS----GNP----EALYRQGMHDYFSLGLTNSGFRLLKRAA---DK--KH----PEATYVYTIIMLL 157 (261)
Q Consensus 95 ~~~ka~~FL~rClea----GNp----eA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA---~~--G~----~~A~Y~lgmL~l~ 157 (261)
+...+..++..+++- .++ .+.+..|+.. +..++-++|+.++.+|. .. +. ..+.|++|.+++
T Consensus 130 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y-~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~- 207 (293)
T 2qfc_A 130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY-AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY- 207 (293)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH-
Confidence 345677788887742 232 2555566543 44666789999999987 21 11 158899999999
Q ss_pred ccCcchHHHHHHHHHHhh
Q 035556 158 CCGSQFKKQGFELLSSLK 175 (261)
Q Consensus 158 ~~G~e~~~~a~~~f~~~~ 175 (261)
-.|. .++|+++|.++.
T Consensus 208 ~~~~--y~~Al~~~~kal 223 (293)
T 2qfc_A 208 LDSR--YEESLYQVNKAI 223 (293)
T ss_dssp HTTC--HHHHHHHHHHHH
T ss_pred HHhh--HHHHHHHHHHHH
Confidence 4443 566777777665
No 164
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=40.95 E-value=45 Score=29.04 Aligned_cols=62 Identities=10% Similarity=0.013 Sum_probs=46.8
Q ss_pred CCchHHHHHHHHHHhccCCcHHHHHHHHHHhhcC--C---------------chhHHHHHHHHHhccCcchHHHHHHHHH
Q 035556 110 GNPEALYRQGMHDYFSLGLTNSGFRLLKRAADKK--H---------------PEATYVYTIIMLLCCGSQFKKQGFELLS 172 (261)
Q Consensus 110 GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~G--~---------------~~A~Y~lgmL~l~~~G~e~~~~a~~~f~ 172 (261)
.++++.+.+|... +..++-++|+..+.+|.... + ..+.+++|.+++ -.|. .++|+++|.
T Consensus 145 ~~a~~~~~~g~~~-~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~--~~~A~~~~~ 220 (336)
T 1p5q_A 145 EQSTIVKERGTVY-FKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL-KLQA--FSAAIESCN 220 (336)
T ss_dssp HHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH-HTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH-HcCC--HHHHHHHHH
Confidence 4566778888765 55677799999999987643 3 378999999999 4443 567888888
Q ss_pred Hhh
Q 035556 173 SLK 175 (261)
Q Consensus 173 ~~~ 175 (261)
++.
T Consensus 221 ~al 223 (336)
T 1p5q_A 221 KAL 223 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 886
No 165
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=40.81 E-value=41 Score=23.56 Aligned_cols=43 Identities=5% Similarity=-0.118 Sum_probs=31.2
Q ss_pred HHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHHHhhc
Q 035556 131 SGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLSSLKS 176 (261)
Q Consensus 131 ~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~~ 176 (261)
.++..+.+|.. +.++.+.|.+|.+++ -.|. .++|+++|.++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~--~~~A~~~~~~al~ 47 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYA-EHEQ--FDAALPHLRAALD 47 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHH-HTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHH-HccC--HHHHHHHHHHHHH
Confidence 45666777654 446889999999999 4443 5678888888763
No 166
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=40.55 E-value=73 Score=29.67 Aligned_cols=65 Identities=9% Similarity=-0.002 Sum_probs=42.5
Q ss_pred CchHHHHHHHHHH-hccCCcHHHHHHHHHHhhcCC-chhHHHHHHHHHhccCcchHHHHHHHHHHhhccc
Q 035556 111 NPEALYRQGMHDY-FSLGLTNSGFRLLKRAADKKH-PEATYVYTIIMLLCCGSQFKKQGFELLSSLKSTY 178 (261)
Q Consensus 111 NpeA~Y~~Gm~~~-~~~~~~~~Gl~lL~~AA~~G~-~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~~t~ 178 (261)
..++...+++-.+ +..++.++|...+.+|-...+ ..|...+|.++. -.|. .++|++.|.++..-.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~-~~G~--~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYE-MKGM--NREAADAYLTAFNLR 340 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HTTC--HHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HCCC--HHHHHHHHHHHHhcC
Confidence 4444444444332 345788999999999988753 223346677777 5554 678999999888543
No 167
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=40.42 E-value=72 Score=26.77 Aligned_cols=76 Identities=12% Similarity=0.052 Sum_probs=50.0
Q ss_pred CcchHHHHHHHHhcCCc------hHHHHHHHHHHhccCCcHHHHHHHHHHhhc--------CCchhHHHHHHHHHhccCc
Q 035556 96 DRHASLFLMRCKKSGNP------EALYRQGMHDYFSLGLTNSGFRLLKRAADK--------KHPEATYVYTIIMLLCCGS 161 (261)
Q Consensus 96 ~~ka~~FL~rCleaGNp------eA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--------G~~~A~Y~lgmL~l~~~G~ 161 (261)
...+..++.++++.+.. .+.+..|.. ++..++.++|+.++.+|... ..+.+.+.+|.++. -.|.
T Consensus 25 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~ 102 (406)
T 3sf4_A 25 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNA-YFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK-VLGN 102 (406)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTC
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-HcCC
Confidence 45677888888876433 345555553 45667778999998887542 23668888999888 4443
Q ss_pred chHHHHHHHHHHhh
Q 035556 162 QFKKQGFELLSSLK 175 (261)
Q Consensus 162 e~~~~a~~~f~~~~ 175 (261)
.++|+++|.++.
T Consensus 103 --~~~A~~~~~~al 114 (406)
T 3sf4_A 103 --FDEAIVCCQRHL 114 (406)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHH
Confidence 455666666654
No 168
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=39.32 E-value=51 Score=27.91 Aligned_cols=75 Identities=17% Similarity=0.123 Sum_probs=48.1
Q ss_pred CcchHHHHHHHHh----cCCch----HHHHHHHHHHhccCCcHHHHHHHHHHhhc----CC----chhHHHHHHHHHhcc
Q 035556 96 DRHASLFLMRCKK----SGNPE----ALYRQGMHDYFSLGLTNSGFRLLKRAADK----KH----PEATYVYTIIMLLCC 159 (261)
Q Consensus 96 ~~ka~~FL~rCle----aGNpe----A~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~----G~----~~A~Y~lgmL~l~~~ 159 (261)
...+...+.++++ .|++. +....|.... . ++.++|+.++.+|... |+ ..+.+++|.+++ ..
T Consensus 92 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~-~~ 168 (307)
T 2ifu_A 92 MPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME-P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV-RQ 168 (307)
T ss_dssp GGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT-T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH-Hc
Confidence 4566777776654 45553 3344444432 3 7778999999988753 21 467788898888 44
Q ss_pred CcchHHHHHHHHHHhh
Q 035556 160 GSQFKKQGFELLSSLK 175 (261)
Q Consensus 160 G~e~~~~a~~~f~~~~ 175 (261)
|. .++|+++|.++.
T Consensus 169 g~--~~~A~~~~~~al 182 (307)
T 2ifu_A 169 QK--FDEAAASLQKEK 182 (307)
T ss_dssp TC--HHHHHHHHHHHH
T ss_pred CC--HHHHHHHHHHHH
Confidence 43 556777777665
No 169
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=38.22 E-value=84 Score=28.30 Aligned_cols=81 Identities=6% Similarity=-0.000 Sum_probs=48.6
Q ss_pred CCcchHHHHHHHHhcC---CchHHHHHHHHHHhccCCcHHHHHHHHHHhhcCC------chhHHHH--HHHHHhccCcch
Q 035556 95 TDRHASLFLMRCKKSG---NPEALYRQGMHDYFSLGLTNSGFRLLKRAADKKH------PEATYVY--TIIMLLCCGSQF 163 (261)
Q Consensus 95 ~~~ka~~FL~rCleaG---NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~G~------~~A~Y~l--gmL~l~~~G~e~ 163 (261)
+.+.+..++.+.++.| +..-++...++.+...+..+.|...|++....-. -.....+ |-+.+ ..|.+.
T Consensus 115 ~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l-~~g~~~ 193 (310)
T 3mv2_B 115 DLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKF-ATNKET 193 (310)
T ss_dssp CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-HHTCST
T ss_pred CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHH-HhCCcc
Confidence 3556777777777765 3445555666666677777888888876544321 2333343 33344 334344
Q ss_pred HHHHHHHHHHhhc
Q 035556 164 KKQGFELLSSLKS 176 (261)
Q Consensus 164 ~~~a~~~f~~~~~ 176 (261)
.+.|+..|..+..
T Consensus 194 ~q~A~~~f~El~~ 206 (310)
T 3mv2_B 194 ATSNFYYYEELSQ 206 (310)
T ss_dssp TTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 6778888887763
No 170
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=38.03 E-value=1.3e+02 Score=27.32 Aligned_cols=74 Identities=15% Similarity=0.111 Sum_probs=48.5
Q ss_pred HHHHHHHHhc--CCchHHHHHHHHHHh------ccCCcH-------HHHHHHHHHhh---cCCchhHHHHHHHHHhccCc
Q 035556 100 SLFLMRCKKS--GNPEALYRQGMHDYF------SLGLTN-------SGFRLLKRAAD---KKHPEATYVYTIIMLLCCGS 161 (261)
Q Consensus 100 ~~FL~rClea--GNpeA~Y~~Gm~~~~------~~~~~~-------~Gl~lL~~AA~---~G~~~A~Y~lgmL~l~~~G~ 161 (261)
...+.+|+.. .++++.+..|....- ..++.+ ++...+.+|.. +.+..+.+.+|.++. ..|.
T Consensus 258 ~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~-~~g~ 336 (530)
T 2ooe_A 258 MFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE-SRMK 336 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH-HTTC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-hcCC
Confidence 3466677664 456677766665543 256655 78888888864 446778888888877 4443
Q ss_pred chHHHHHHHHHHhhc
Q 035556 162 QFKKQGFELLSSLKS 176 (261)
Q Consensus 162 e~~~~a~~~f~~~~~ 176 (261)
.+++.+.|.++..
T Consensus 337 --~~~A~~~~~~al~ 349 (530)
T 2ooe_A 337 --YEKVHSIYNRLLA 349 (530)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhC
Confidence 5567777777653
No 171
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=37.42 E-value=1.4e+02 Score=27.19 Aligned_cols=48 Identities=17% Similarity=0.059 Sum_probs=24.8
Q ss_pred CCcchHHHHHHHHhcCCch--HHHHHHHHHHhccCCcHHHHHHHHHHhhc
Q 035556 95 TDRHASLFLMRCKKSGNPE--ALYRQGMHDYFSLGLTNSGFRLLKRAADK 142 (261)
Q Consensus 95 ~~~ka~~FL~rCleaGNpe--A~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~ 142 (261)
..+.+...+.++++..+.. ..|+.-+..+...++.+.+...+.+|...
T Consensus 336 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 336 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp CHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3456777777777643322 13333333233344456666666666554
No 172
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=36.74 E-value=58 Score=27.34 Aligned_cols=57 Identities=16% Similarity=-0.017 Sum_probs=31.9
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHhhc----CC----chhHHHHHHHHHhccCcchHHHHHHHHHHh
Q 035556 115 LYRQGMHDYFSLGLTNSGFRLLKRAADK----KH----PEATYVYTIIMLLCCGSQFKKQGFELLSSL 174 (261)
Q Consensus 115 ~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~----G~----~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~ 174 (261)
+|.++...+...++-++|+..+.+|... |+ +.+.+++|.++. -.|. .++|+++|.++
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~g~--~~~A~~~~~~A 103 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK-SGGN--SVNAVDSLENA 103 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HCCC--HHHHHHHHHHH
Confidence 3444444555666667777777776653 22 456677777777 3332 33444444444
No 173
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=36.72 E-value=55 Score=24.67 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=42.0
Q ss_pred cchHHHHHHHHh----cCC----chHHHHHHHHHHhccCCcHHHHHHHHHHhhc----C-----CchhHHHHHHHHHhcc
Q 035556 97 RHASLFLMRCKK----SGN----PEALYRQGMHDYFSLGLTNSGFRLLKRAADK----K-----HPEATYVYTIIMLLCC 159 (261)
Q Consensus 97 ~ka~~FL~rCle----aGN----peA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~----G-----~~~A~Y~lgmL~l~~~ 159 (261)
..+...+.++++ .|+ +.+.+..|... ...++.++|..++.+|... | ...+.+++|.+++ -.
T Consensus 43 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~-~~ 120 (203)
T 3gw4_A 43 DEARASFQALQQQAQKSGDHTAEHRALHQVGMVE-RMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL-HF 120 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH-Hh
Confidence 345555555554 222 23444555443 3455667888888776653 2 2456778888888 34
Q ss_pred CcchHHHHHHHHHHhh
Q 035556 160 GSQFKKQGFELLSSLK 175 (261)
Q Consensus 160 G~e~~~~a~~~f~~~~ 175 (261)
|. .++|+++|.++.
T Consensus 121 g~--~~~A~~~~~~al 134 (203)
T 3gw4_A 121 GD--LAGARQEYEKSL 134 (203)
T ss_dssp TC--HHHHHHHHHHHH
T ss_pred CC--HHHHHHHHHHHH
Confidence 43 445666666554
No 174
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=36.40 E-value=1.1e+02 Score=23.50 Aligned_cols=61 Identities=11% Similarity=0.055 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHhccCCcHHHHHHHHHHhhc--CCc----------------hhHHHHHHHHHhccCcchHHHHHHHHHH
Q 035556 112 PEALYRQGMHDYFSLGLTNSGFRLLKRAADK--KHP----------------EATYVYTIIMLLCCGSQFKKQGFELLSS 173 (261)
Q Consensus 112 peA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--G~~----------------~A~Y~lgmL~l~~~G~e~~~~a~~~f~~ 173 (261)
+++.+..|.. ++..++-++|+.++.+|... .++ .+.+.+|.+++ -.|. .++|+++|.+
T Consensus 38 ~~~~~~~g~~-~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~--~~~A~~~~~~ 113 (198)
T 2fbn_A 38 AFDIKEEGNE-FFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN-KNKD--YPKAIDHASK 113 (198)
T ss_dssp HHHHHHHHHH-HHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH-HhcC--HHHHHHHHHH
Confidence 3455666654 45667779999999998863 233 78899999998 4443 5678888888
Q ss_pred hhc
Q 035556 174 LKS 176 (261)
Q Consensus 174 ~~~ 176 (261)
+..
T Consensus 114 al~ 116 (198)
T 2fbn_A 114 VLK 116 (198)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 175
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=35.58 E-value=51 Score=28.19 Aligned_cols=77 Identities=12% Similarity=0.039 Sum_probs=51.0
Q ss_pred CcchHHHHHHHHhcCC--------chHHHHHHHHHHhccCCcHHHHHHHHHHhhcC--------CchhHHHHHHHHHhcc
Q 035556 96 DRHASLFLMRCKKSGN--------PEALYRQGMHDYFSLGLTNSGFRLLKRAADKK--------HPEATYVYTIIMLLCC 159 (261)
Q Consensus 96 ~~ka~~FL~rCleaGN--------peA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~G--------~~~A~Y~lgmL~l~~~ 159 (261)
...+...+..+++... +.+.+..|... ...++.++|+.++.+|.... ...+.+.+|.++. ..
T Consensus 279 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~ 356 (411)
T 4a1s_A 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTY-TLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHS-AI 356 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH-Hh
Confidence 4556667766665322 34555555543 55667789999998876531 1458888999888 55
Q ss_pred CcchHHHHHHHHHHhhc
Q 035556 160 GSQFKKQGFELLSSLKS 176 (261)
Q Consensus 160 G~e~~~~a~~~f~~~~~ 176 (261)
|. .++|+++|.++..
T Consensus 357 g~--~~~A~~~~~~al~ 371 (411)
T 4a1s_A 357 GG--HERALKYAEQHLQ 371 (411)
T ss_dssp TC--HHHHHHHHHHHHH
T ss_pred cc--HHHHHHHHHHHHH
Confidence 53 5678888888774
No 176
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=34.90 E-value=1.9e+02 Score=23.81 Aligned_cols=77 Identities=14% Similarity=0.053 Sum_probs=48.1
Q ss_pred CcchHHHHHHHHhcC--Cch----HHHHHHHHHHh-ccCCcHHHHHHHHHHhhc--CC------chhHHHHHHHHHhccC
Q 035556 96 DRHASLFLMRCKKSG--NPE----ALYRQGMHDYF-SLGLTNSGFRLLKRAADK--KH------PEATYVYTIIMLLCCG 160 (261)
Q Consensus 96 ~~ka~~FL~rCleaG--Npe----A~Y~~Gm~~~~-~~~~~~~Gl~lL~~AA~~--G~------~~A~Y~lgmL~l~~~G 160 (261)
...+...+...++.. +|+ +.|..++-.++ ..++.++|+.++.+|... .. ..+.+++|.++. -.|
T Consensus 91 y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~g 169 (293)
T 3u3w_A 91 YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENG 169 (293)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-HcC
Confidence 345666676666532 333 33444554443 444669999999999862 11 226889999998 444
Q ss_pred cchHHHHHHHHHHhh
Q 035556 161 SQFKKQGFELLSSLK 175 (261)
Q Consensus 161 ~e~~~~a~~~f~~~~ 175 (261)
. .++|+++|.++.
T Consensus 170 ~--~~~A~~~~~~al 182 (293)
T 3u3w_A 170 Y--LKKGIDLFEQIL 182 (293)
T ss_dssp C--HHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHH
Confidence 3 566777777765
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=34.49 E-value=55 Score=24.42 Aligned_cols=59 Identities=17% Similarity=0.095 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhhc--------------------CCchhHHHHHHHHHhccCcchHHHHHHHHHH
Q 035556 114 ALYRQGMHDYFSLGLTNSGFRLLKRAADK--------------------KHPEATYVYTIIMLLCCGSQFKKQGFELLSS 173 (261)
Q Consensus 114 A~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--------------------G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~ 173 (261)
+...+|.. ++..++-.+|+..+.+|... .+..+.+++|.+++ -.|. .++|++++.+
T Consensus 13 ~~~~~G~~-~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~--~~~A~~~~~~ 88 (162)
T 3rkv_A 13 ALRQKGNE-LFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL-NIGD--LHEAEETSSE 88 (162)
T ss_dssp HHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH-HHTC--HHHHHHHHHH
T ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCc--HHHHHHHHHH
Confidence 34444543 35556667777777776643 34578999999999 4443 5678888888
Q ss_pred hhc
Q 035556 174 LKS 176 (261)
Q Consensus 174 ~~~ 176 (261)
+..
T Consensus 89 al~ 91 (162)
T 3rkv_A 89 VLK 91 (162)
T ss_dssp HHH
T ss_pred HHh
Confidence 863
No 178
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=34.18 E-value=74 Score=25.52 Aligned_cols=77 Identities=13% Similarity=0.019 Sum_probs=49.7
Q ss_pred CCcchHHHHHHHHhc------C-C---chHHHHHHHHHHhccCCcHHHHHHHHHHhhc----------CCchhHHHHHHH
Q 035556 95 TDRHASLFLMRCKKS------G-N---PEALYRQGMHDYFSLGLTNSGFRLLKRAADK----------KHPEATYVYTII 154 (261)
Q Consensus 95 ~~~ka~~FL~rClea------G-N---peA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~----------G~~~A~Y~lgmL 154 (261)
....+...+.++++. + + +.+.+..|.. +...++.++|+.++.+|... ....+.+.+|.+
T Consensus 84 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 162 (311)
T 3nf1_A 84 KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVL-YGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALL 162 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-HHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 345677888888764 2 2 2344444443 35566778999999988763 235678888888
Q ss_pred HHhccCcchHHHHHHHHHHhh
Q 035556 155 MLLCCGSQFKKQGFELLSSLK 175 (261)
Q Consensus 155 ~l~~~G~e~~~~a~~~f~~~~ 175 (261)
++ -.|. .++|+++|.++.
T Consensus 163 ~~-~~~~--~~~A~~~~~~a~ 180 (311)
T 3nf1_A 163 CQ-NQGK--YEEVEYYYQRAL 180 (311)
T ss_dssp HH-TTTC--HHHHHHHHHHHH
T ss_pred HH-HcCC--HHHHHHHHHHHH
Confidence 88 4443 456666666664
No 179
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=33.68 E-value=1.3e+02 Score=24.98 Aligned_cols=78 Identities=12% Similarity=-0.033 Sum_probs=51.6
Q ss_pred CcchHHHHHHHHh----cCCc----hHHHHHHHHHHhccCCcHHHHHHHHHHhhc----CC----chhHHHHHHHHHhcc
Q 035556 96 DRHASLFLMRCKK----SGNP----EALYRQGMHDYFSLGLTNSGFRLLKRAADK----KH----PEATYVYTIIMLLCC 159 (261)
Q Consensus 96 ~~ka~~FL~rCle----aGNp----eA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~----G~----~~A~Y~lgmL~l~~~ 159 (261)
...+..++.++++ .|++ .+.+..|....-..++.++|+.++.+|... ++ ..+.+.+|.+++ -.
T Consensus 93 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~-~~ 171 (292)
T 1qqe_A 93 SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA-LD 171 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH-Hh
Confidence 4456666666654 3554 344555554333237889999999998763 22 346778899988 44
Q ss_pred CcchHHHHHHHHHHhhc
Q 035556 160 GSQFKKQGFELLSSLKS 176 (261)
Q Consensus 160 G~e~~~~a~~~f~~~~~ 176 (261)
|. .++|+++|.++..
T Consensus 172 g~--~~~A~~~~~~al~ 186 (292)
T 1qqe_A 172 GQ--YIEASDIYSKLIK 186 (292)
T ss_dssp TC--HHHHHHHHHHHHH
T ss_pred CC--HHHHHHHHHHHHH
Confidence 43 6789999998873
No 180
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=33.18 E-value=43 Score=23.33 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=24.3
Q ss_pred cCCchhHHHHHHHHHhccCcchHHHHHHHHHHhh
Q 035556 142 KKHPEATYVYTIIMLLCCGSQFKKQGFELLSSLK 175 (261)
Q Consensus 142 ~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~ 175 (261)
+.++.+.|.+|.+++ -.|. .++|+++|.++.
T Consensus 4 p~~~~~~~~lg~~~~-~~g~--~~~A~~~~~~al 34 (100)
T 3ma5_A 4 PEDPFTRYALAQEHL-KHDN--ASRALALFEELV 34 (100)
T ss_dssp -CCHHHHHHHHHHHH-HTTC--HHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH-HcCC--HHHHHHHHHHHH
Confidence 457889999999999 4443 678888888886
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=31.36 E-value=83 Score=22.02 Aligned_cols=10 Identities=10% Similarity=-0.187 Sum_probs=4.8
Q ss_pred hHHHHHHHHH
Q 035556 147 ATYVYTIIML 156 (261)
Q Consensus 147 A~Y~lgmL~l 156 (261)
+.+.+|.+++
T Consensus 51 ~~~~l~~~~~ 60 (164)
T 3ro3_A 51 AYSNLGNAYI 60 (164)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444454444
No 182
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=31.09 E-value=69 Score=27.64 Aligned_cols=58 Identities=10% Similarity=0.081 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhhc--------CCchhHHHHHHHHHhccCcchHHHHHHHHHHhh
Q 035556 114 ALYRQGMHDYFSLGLTNSGFRLLKRAADK--------KHPEATYVYTIIMLLCCGSQFKKQGFELLSSLK 175 (261)
Q Consensus 114 A~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~--------G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~ 175 (261)
..|..|+. ++..++-++|+.++.+|... +.+.+.|.+|.++. -.|. ..+|++++.++.
T Consensus 103 ~~~~~g~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~-~~~~--~~~A~~~~~~al 168 (378)
T 3q15_A 103 SLFFRGMY-EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY-HMKQ--THVSMYHILQAL 168 (378)
T ss_dssp HHHHHHHH-HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH-HcCC--cHHHHHHHHHHH
Confidence 45667764 35667779999999998753 24678999999999 4443 345555555544
No 183
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=30.04 E-value=76 Score=27.35 Aligned_cols=77 Identities=13% Similarity=0.091 Sum_probs=52.2
Q ss_pred CcchHHHHHHHHhc----CCc----hHHHHHHHHHHhccCCcHHHHHHHHHHhh-------cCCchhHHHHHHHHHhccC
Q 035556 96 DRHASLFLMRCKKS----GNP----EALYRQGMHDYFSLGLTNSGFRLLKRAAD-------KKHPEATYVYTIIMLLCCG 160 (261)
Q Consensus 96 ~~ka~~FL~rClea----GNp----eA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~-------~G~~~A~Y~lgmL~l~~~G 160 (261)
.+.+...+.++++- |++ .+.+..|... ...++.++|+.++.+|.. +..+.+.+.+|.++. -.|
T Consensus 198 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~-~~g 275 (378)
T 3q15_A 198 YDKALPHLEAALELAMDIQNDRFIAISLLNIANSY-DRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLC-KAG 275 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHH-HCC
Confidence 45677777777663 443 3445555543 455677899999999876 223678899999998 444
Q ss_pred cchHHHHHHHHHHhhc
Q 035556 161 SQFKKQGFELLSSLKS 176 (261)
Q Consensus 161 ~e~~~~a~~~f~~~~~ 176 (261)
. .++|+++|.++..
T Consensus 276 ~--~~~A~~~~~~al~ 289 (378)
T 3q15_A 276 Q--TQKAFQFIEEGLD 289 (378)
T ss_dssp C--HHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHHH
Confidence 3 5678888887763
No 184
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=29.07 E-value=1.1e+02 Score=27.64 Aligned_cols=73 Identities=14% Similarity=0.073 Sum_probs=49.6
Q ss_pred hHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhhc----CCchhHHHHHHHHHhccCcchHHHHHHHHH
Q 035556 99 ASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAADK----KHPEATYVYTIIMLLCCGSQFKKQGFELLS 172 (261)
Q Consensus 99 a~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~----G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~ 172 (261)
+..-+...++. .++.+.++.|.. +...++.++|+.+|.+.... ++.+|....+.|++ -.|. .++|.+.|.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i-~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L-~~~r--~d~A~k~l~ 160 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATA-QAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL-LNNN--VSTASTIFD 160 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHH-HHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH-HTTC--HHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHH-HHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH-HCCC--HHHHHHHHH
Confidence 55556655553 456677777744 45568889999999998665 46788888888888 3443 455666665
Q ss_pred Hhh
Q 035556 173 SLK 175 (261)
Q Consensus 173 ~~~ 175 (261)
.+.
T Consensus 161 ~~~ 163 (310)
T 3mv2_B 161 NYT 163 (310)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 185
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=27.94 E-value=1.4e+02 Score=24.62 Aligned_cols=77 Identities=9% Similarity=0.021 Sum_probs=50.1
Q ss_pred CCcchHHHHHHHHhc--CCch------HHHHHHHHHHhccCCcHHHHHHHHHHhh----c-C----CchhHHHHHHHHHh
Q 035556 95 TDRHASLFLMRCKKS--GNPE------ALYRQGMHDYFSLGLTNSGFRLLKRAAD----K-K----HPEATYVYTIIMLL 157 (261)
Q Consensus 95 ~~~ka~~FL~rClea--GNpe------A~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~----~-G----~~~A~Y~lgmL~l~ 157 (261)
+...+...+..+++- .+++ +.+..|.. ++..++-++|+.++.+|.. . + ...+.|++|.+++
T Consensus 130 ~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~-y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~- 207 (293)
T 3u3w_A 130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANI-YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY- 207 (293)
T ss_dssp CHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-
Confidence 346777888888862 2222 34444443 3556677999999999883 1 1 2457899999999
Q ss_pred ccCcchHHHHHHHHHHhh
Q 035556 158 CCGSQFKKQGFELLSSLK 175 (261)
Q Consensus 158 ~~G~e~~~~a~~~f~~~~ 175 (261)
-.|. .++|+++|.++.
T Consensus 208 ~~~~--y~~A~~~~~~al 223 (293)
T 3u3w_A 208 LDSR--YEESLYQVNKAI 223 (293)
T ss_dssp HTTC--HHHHHHHHHHHH
T ss_pred HHhH--HHHHHHHHHHHH
Confidence 4443 456777777665
No 186
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=27.30 E-value=2.1e+02 Score=23.51 Aligned_cols=49 Identities=14% Similarity=0.066 Sum_probs=34.7
Q ss_pred hccCCcHHHHHHHHHHhhcC----C----chhHHHHHHHHHhccCcchHHHHHHHHHHhh
Q 035556 124 FSLGLTNSGFRLLKRAADKK----H----PEATYVYTIIMLLCCGSQFKKQGFELLSSLK 175 (261)
Q Consensus 124 ~~~~~~~~Gl~lL~~AA~~G----~----~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~ 175 (261)
...++.++|+..+.+|.... . ..+.+.+|+++. -.|. .++|+++|.++.
T Consensus 126 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~~~--~~~A~~~~~kal 182 (293)
T 2qfc_A 126 LKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGY--LKKGIDLFEQIL 182 (293)
T ss_dssp HTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH-HTTC--HHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HcCC--HHHHHHHHHHHH
Confidence 44557799999999997421 1 448889999999 4443 556777777765
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=27.27 E-value=1.3e+02 Score=26.19 Aligned_cols=61 Identities=5% Similarity=-0.035 Sum_probs=43.6
Q ss_pred chHHHHHHHHHHhccCCcHHHHHHHHHHhhcCCc-------------------hhHHHHHHHHHhccCcchHHHHHHHHH
Q 035556 112 PEALYRQGMHDYFSLGLTNSGFRLLKRAADKKHP-------------------EATYVYTIIMLLCCGSQFKKQGFELLS 172 (261)
Q Consensus 112 peA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~G~~-------------------~A~Y~lgmL~l~~~G~e~~~~a~~~f~ 172 (261)
.++.+.+|.. ++..++-.+|+..+.+|...... .+.+++|++++ -.|. .++|+++|.
T Consensus 179 a~~~~~~g~~-~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~-~~g~--~~~A~~~~~ 254 (338)
T 2if4_A 179 ADRRKMDGNS-LFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI-KLKR--YDEAIGHCN 254 (338)
T ss_dssp HHHHHHHHHH-TCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH-TTTC--CHHHHHHHH
T ss_pred HHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHH-HcCC--HHHHHHHHH
Confidence 3456666653 46677779999999998765332 27889999999 4443 567888888
Q ss_pred Hhhc
Q 035556 173 SLKS 176 (261)
Q Consensus 173 ~~~~ 176 (261)
++..
T Consensus 255 ~al~ 258 (338)
T 2if4_A 255 IVLT 258 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8863
No 188
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=25.17 E-value=1.5e+02 Score=23.59 Aligned_cols=59 Identities=10% Similarity=0.008 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHhccCCcHHHHHHHHHHhhcCC------chhHHHHHHHHHhccCcchHHHHHHHHHHhh
Q 035556 113 EALYRQGMHDYFSLGLTNSGFRLLKRAADKKH------PEATYVYTIIMLLCCGSQFKKQGFELLSSLK 175 (261)
Q Consensus 113 eA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~G~------~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~ 175 (261)
...+..|.. ++..++.++|+.++.+|..... ..+.+.+|.+++ -.|. .++|+++|.++.
T Consensus 6 ~~l~~~g~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~--~~~A~~~~~~al 70 (338)
T 3ro2_A 6 LELALEGER-LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHD--YAKALEYHHHDL 70 (338)
T ss_dssp HHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHH-HcCC--HHHHHHHHHHHH
Confidence 345666664 4566777999999999877542 356778888888 4443 456666666554
No 189
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=23.71 E-value=1.6e+02 Score=19.45 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=42.7
Q ss_pred CcchHHHHHHHHhc--CCchHHHHHHHHHHhccCCcHHHHHHHHHHhhcC--C------chhHHHHHHHHH
Q 035556 96 DRHASLFLMRCKKS--GNPEALYRQGMHDYFSLGLTNSGFRLLKRAADKK--H------PEATYVYTIIML 156 (261)
Q Consensus 96 ~~ka~~FL~rClea--GNpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~G--~------~~A~Y~lgmL~l 156 (261)
...+...+.++++. .++++.+..|... +..++-++|+..+.+|.... + ..+.|.+|.++.
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 89 (111)
T 2l6j_A 20 YREAVHCYDQLITAQPQNPVGYSNKAMAL-IKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQG 89 (111)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 34666777777664 4677888888754 45567799999999988753 3 456777777776
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=23.56 E-value=1.9e+02 Score=20.04 Aligned_cols=58 Identities=10% Similarity=0.004 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhhcC----C----chhHHHHHHHHHhccCcchHHHHHHHHHHhh
Q 035556 114 ALYRQGMHDYFSLGLTNSGFRLLKRAADKK----H----PEATYVYTIIMLLCCGSQFKKQGFELLSSLK 175 (261)
Q Consensus 114 A~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~G----~----~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~ 175 (261)
+.+..|... +..++.++|..++.+|.... + ..+.+.+|.+++ -.|. .++|+++|.++.
T Consensus 51 ~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~--~~~A~~~~~~a~ 116 (164)
T 3ro3_A 51 AYSNLGNAY-IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT-LLQD--YEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH-HHhh--HHHHHHHHHHHH
Confidence 445555544 44566688888888876532 1 457788888888 4443 455666666654
No 191
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=23.43 E-value=1.2e+02 Score=27.92 Aligned_cols=50 Identities=8% Similarity=0.004 Sum_probs=38.2
Q ss_pred HhccCCcHHHHHHHHHHhh--cCCchhHHHHHHHHHhccCcchHHHHHHHHHHhh
Q 035556 123 YFSLGLTNSGFRLLKRAAD--KKHPEATYVYTIIMLLCCGSQFKKQGFELLSSLK 175 (261)
Q Consensus 123 ~~~~~~~~~Gl~lL~~AA~--~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~ 175 (261)
++..++-++|+.++.+|.. +.++.+.+.+|.+++ -.|. .++|+++|.++.
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~-~~g~--~~~A~~~~~~al 67 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTEC--YGYALGDATRAI 67 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--HHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcC--HHHHHHHHHHHH
Confidence 3456677899999998866 346889999999999 4443 577888888876
No 192
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=23.33 E-value=1.7e+02 Score=26.54 Aligned_cols=61 Identities=10% Similarity=-0.004 Sum_probs=45.2
Q ss_pred CchHHHHHHHHHHhccCCcHHHHHHHHHHhh--cCC---------------chhHHHHHHHHHhccCcchHHHHHHHHHH
Q 035556 111 NPEALYRQGMHDYFSLGLTNSGFRLLKRAAD--KKH---------------PEATYVYTIIMLLCCGSQFKKQGFELLSS 173 (261)
Q Consensus 111 NpeA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~--~G~---------------~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~ 173 (261)
+.++.+.+|... +..++-.+|+..+.+|.. +.+ ..+.+++|++++ -.|. .++|+++|.+
T Consensus 267 ~a~~~~~~G~~~-~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~--~~~A~~~~~~ 342 (457)
T 1kt0_A 267 QAAIVKEKGTVY-FKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL-KLRE--YTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH-HTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH-HhcC--HHHHHHHHHH
Confidence 455677777754 456777999999999876 233 478999999999 4443 6778888888
Q ss_pred hh
Q 035556 174 LK 175 (261)
Q Consensus 174 ~~ 175 (261)
+.
T Consensus 343 al 344 (457)
T 1kt0_A 343 AL 344 (457)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=22.72 E-value=1e+02 Score=27.39 Aligned_cols=60 Identities=8% Similarity=-0.030 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhccCCcHHHHHHHHHHhh------------------cCCchhHHHHHHHHHhccCcchHHHHHHHHHHh
Q 035556 113 EALYRQGMHDYFSLGLTNSGFRLLKRAAD------------------KKHPEATYVYTIIMLLCCGSQFKKQGFELLSSL 174 (261)
Q Consensus 113 eA~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~------------------~G~~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~ 174 (261)
++.+.+|.. ++..++-++|+..+.+|.. ..+..+.+++|.+++ -.|. .++|++++.++
T Consensus 224 ~~~~~~g~~-~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~--~~~A~~~~~~a 299 (370)
T 1ihg_A 224 EDLKNIGNT-FFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-KMSD--WQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-HTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHH-hccC--HHHHHHHHHHH
Confidence 345666654 4566677899999888875 235678899999999 4443 67899999988
Q ss_pred hc
Q 035556 175 KS 176 (261)
Q Consensus 175 ~~ 176 (261)
..
T Consensus 300 l~ 301 (370)
T 1ihg_A 300 LE 301 (370)
T ss_dssp HT
T ss_pred HH
Confidence 74
No 194
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=22.65 E-value=2.2e+02 Score=23.63 Aligned_cols=58 Identities=10% Similarity=0.024 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhhcCC------chhHHHHHHHHHhccCcchHHHHHHHHHHhh
Q 035556 114 ALYRQGMHDYFSLGLTNSGFRLLKRAADKKH------PEATYVYTIIMLLCCGSQFKKQGFELLSSLK 175 (261)
Q Consensus 114 A~Y~~Gm~~~~~~~~~~~Gl~lL~~AA~~G~------~~A~Y~lgmL~l~~~G~e~~~~a~~~f~~~~ 175 (261)
+.+..|.. ++..++.++|+.++.+|..... ..+.+.+|.+++ -.|. .++|+++|.++.
T Consensus 11 ~l~~~g~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~--~~~A~~~~~~al 74 (406)
T 3sf4_A 11 ELALEGER-LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHD--YAKALEYHHHDL 74 (406)
T ss_dssp HHHHHHHH-HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH-HhcC--HHHHHHHHHHHH
Confidence 44566665 4566777999999999887543 257888898888 4443 456666666554
No 195
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=21.44 E-value=3.6e+02 Score=24.39 Aligned_cols=76 Identities=12% Similarity=0.023 Sum_probs=54.2
Q ss_pred chHHHHHHHHhcCCch-----HHHHHHHHHHhc----cCCcHHHHHHHHHHhh--cC-CchhHHHHHHHHHhccCcchHH
Q 035556 98 HASLFLMRCKKSGNPE-----ALYRQGMHDYFS----LGLTNSGFRLLKRAAD--KK-HPEATYVYTIIMLLCCGSQFKK 165 (261)
Q Consensus 98 ka~~FL~rCleaGNpe-----A~Y~~Gm~~~~~----~~~~~~Gl~lL~~AA~--~G-~~~A~Y~lgmL~l~~~G~e~~~ 165 (261)
.+..-+.+.++ =+|. |+..+|...+.. -++.+.|..++++|-. ++ +..+.|.||-.+..-.|. .+
T Consensus 181 ~A~a~lerAle-LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd--~~ 257 (301)
T 3u64_A 181 AAVMMLERACD-LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN--RA 257 (301)
T ss_dssp HHHHHHHHHHH-HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC--HH
T ss_pred HHHHHHHHHHH-hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC--HH
Confidence 45566788887 3444 777888765533 3678999999999876 33 389999999988722232 56
Q ss_pred HHHHHHHHhhc
Q 035556 166 QGFELLSSLKS 176 (261)
Q Consensus 166 ~a~~~f~~~~~ 176 (261)
.+.++|.++..
T Consensus 258 ~a~~~L~kAL~ 268 (301)
T 3u64_A 258 GFDEALDRALA 268 (301)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 78888888873
No 196
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=20.93 E-value=3.8e+02 Score=24.53 Aligned_cols=57 Identities=25% Similarity=0.210 Sum_probs=32.4
Q ss_pred HHHHHHhccCCcHHHHHHHHHHhhcCCchhHHH-HHHHHH-hccCcchHHHHHHHHHHhh
Q 035556 118 QGMHDYFSLGLTNSGFRLLKRAADKKHPEATYV-YTIIML-LCCGSQFKKQGFELLSSLK 175 (261)
Q Consensus 118 ~Gm~~~~~~~~~~~Gl~lL~~AA~~G~~~A~Y~-lgmL~l-~~~G~e~~~~a~~~f~~~~ 175 (261)
.-+..|+..+|..+|...++.-..+ +-...++ .++... +..+....+...++|..+.
T Consensus 222 ~lL~EY~~s~D~~EA~~ci~EL~~p-~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~ 280 (358)
T 3eiq_C 222 MLLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLW 280 (358)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHCCT-TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHccCC-cchHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 4567788888888998888877654 3222333 233322 4333323455566665554
Done!