Query 035557
Match_columns 129
No_of_seqs 184 out of 1019
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 04:02:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035557.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035557hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02210 UDP-glucosyl transfer 100.0 3.8E-34 8.2E-39 222.6 13.1 124 1-124 330-454 (456)
2 PLN02555 limonoid glucosyltran 100.0 4.4E-34 9.6E-39 223.0 13.6 127 1-127 343-471 (480)
3 PLN02410 UDP-glucoronosyl/UDP- 100.0 5.6E-34 1.2E-38 221.3 13.6 121 1-125 330-450 (451)
4 PLN02173 UDP-glucosyl transfer 100.0 8.3E-34 1.8E-38 219.9 13.5 124 1-124 323-447 (449)
5 PLN02207 UDP-glycosyltransfera 100.0 1.1E-33 2.4E-38 220.1 13.1 126 1-127 338-467 (468)
6 PLN03007 UDP-glucosyltransfera 100.0 3.5E-33 7.5E-38 218.6 13.3 126 1-126 351-481 (482)
7 PLN02554 UDP-glycosyltransfera 100.0 3.8E-33 8.3E-38 218.2 12.6 124 1-127 348-480 (481)
8 PLN00164 glucosyltransferase; 100.0 6.3E-33 1.4E-37 216.9 13.3 126 1-126 345-474 (480)
9 PLN02448 UDP-glycosyltransfera 100.0 1.3E-32 2.8E-37 214.3 13.7 125 1-125 329-457 (459)
10 PLN02152 indole-3-acetate beta 100.0 1.2E-32 2.5E-37 213.8 12.9 123 1-124 333-455 (455)
11 PLN02992 coniferyl-alcohol glu 100.0 1.6E-32 3.4E-37 214.2 13.3 124 1-125 344-469 (481)
12 PLN02534 UDP-glycosyltransfera 100.0 1.6E-32 3.5E-37 214.6 13.3 129 1-129 350-490 (491)
13 PLN02167 UDP-glycosyltransfera 100.0 1.7E-32 3.7E-37 214.3 13.2 126 1-128 346-475 (475)
14 PLN03015 UDP-glucosyl transfer 100.0 1.8E-32 3.8E-37 213.2 13.1 124 1-124 341-467 (470)
15 PLN02208 glycosyltransferase f 100.0 2.6E-32 5.6E-37 211.5 13.0 122 1-126 317-440 (442)
16 PLN02863 UDP-glucoronosyl/UDP- 100.0 3E-32 6.5E-37 212.8 13.4 124 1-126 349-472 (477)
17 PLN02562 UDP-glycosyltransfera 100.0 7.5E-32 1.6E-36 209.4 12.2 115 1-124 334-448 (448)
18 PLN02764 glycosyltransferase f 100.0 1.7E-31 3.6E-36 207.0 13.6 123 1-127 323-447 (453)
19 PLN02670 transferase, transfer 100.0 2E-31 4.2E-36 207.7 12.0 122 1-127 345-467 (472)
20 PLN03004 UDP-glycosyltransfera 100.0 1.1E-31 2.4E-36 208.2 10.2 111 1-114 340-450 (451)
21 PLN00414 glycosyltransferase f 100.0 3.9E-30 8.5E-35 199.6 12.6 123 1-127 318-442 (446)
22 PF00201 UDPGT: UDP-glucoronos 100.0 3.3E-30 7.1E-35 201.9 7.6 114 1-124 329-442 (500)
23 PHA03392 egt ecdysteroid UDP-g 100.0 1.1E-27 2.3E-32 188.6 12.8 117 1-127 352-468 (507)
24 KOG1192 UDP-glucuronosyl and U 99.9 1.4E-24 3.1E-29 169.7 11.0 98 1-105 341-439 (496)
25 COG1819 Glycosyl transferases, 99.9 2.8E-23 6.1E-28 159.8 11.9 110 1-124 290-399 (406)
26 TIGR01426 MGT glycosyltransfer 99.9 1.8E-21 3.9E-26 148.6 11.8 109 1-122 281-389 (392)
27 cd03784 GT1_Gtf_like This fami 99.9 4.5E-21 9.8E-26 146.4 10.6 94 1-104 294-387 (401)
28 PF04101 Glyco_tran_28_C: Glyc 99.6 1.6E-15 3.5E-20 103.5 3.3 80 1-86 61-145 (167)
29 PRK12446 undecaprenyldiphospho 99.5 3.3E-14 7.1E-19 107.9 7.8 85 5-97 246-335 (352)
30 COG0707 MurG UDP-N-acetylgluco 99.5 4.9E-13 1.1E-17 101.6 10.1 75 6-86 247-325 (357)
31 PF13528 Glyco_trans_1_3: Glyc 99.4 2.8E-13 6.1E-18 100.5 5.4 72 5-82 244-317 (318)
32 TIGR00661 MJ1255 conserved hyp 99.4 4.3E-13 9.3E-18 100.3 5.0 76 2-86 236-315 (321)
33 PRK00726 murG undecaprenyldiph 99.4 3.9E-12 8.4E-17 95.9 9.3 107 5-124 246-356 (357)
34 TIGR01133 murG undecaprenyldip 99.1 7.3E-10 1.6E-14 82.9 8.7 83 5-96 244-329 (348)
35 cd03785 GT1_MurG MurG is an N- 99.1 1E-09 2.3E-14 82.1 8.7 76 5-86 246-325 (350)
36 PRK13608 diacylglycerol glucos 99.0 3.8E-09 8.2E-14 81.1 10.2 102 6-124 268-370 (391)
37 PLN02605 monogalactosyldiacylg 98.9 1.3E-08 2.8E-13 77.8 10.2 101 6-123 277-379 (382)
38 TIGR00215 lpxB lipid-A-disacch 98.9 1.4E-08 3E-13 78.1 9.0 104 6-120 262-383 (385)
39 PRK13609 diacylglycerol glucos 98.9 2.3E-08 4.9E-13 76.1 9.7 105 2-123 263-369 (380)
40 TIGR03492 conserved hypothetic 98.8 4.3E-08 9.3E-13 75.7 9.9 101 6-121 291-394 (396)
41 PRK00025 lpxB lipid-A-disaccha 98.7 9.8E-08 2.1E-12 72.5 8.4 107 6-123 256-375 (380)
42 COG4671 Predicted glycosyl tra 98.6 9E-08 2E-12 72.1 4.8 73 6-84 289-364 (400)
43 TIGR03590 PseG pseudaminic aci 98.4 1.5E-07 3.2E-12 69.5 2.6 47 2-51 231-278 (279)
44 KOG3349 Predicted glycosyltran 98.4 5.4E-07 1.2E-11 60.5 3.9 65 6-81 75-143 (170)
45 PRK14089 ipid-A-disaccharide s 98.3 1.8E-06 3.8E-11 65.8 5.6 88 6-102 230-332 (347)
46 cd03814 GT1_like_2 This family 98.2 1.6E-05 3.5E-10 58.6 10.3 102 2-122 254-362 (364)
47 TIGR00236 wecB UDP-N-acetylglu 98.0 1.5E-05 3.3E-10 60.4 6.0 95 6-121 269-363 (365)
48 PRK05749 3-deoxy-D-manno-octul 97.9 0.00019 4.1E-09 55.6 10.7 71 6-86 314-389 (425)
49 cd03801 GT1_YqgM_like This fam 97.8 0.00044 9.6E-09 50.3 10.2 69 6-86 270-342 (374)
50 PRK15484 lipopolysaccharide 1, 97.8 0.00056 1.2E-08 52.4 11.1 70 6-86 271-345 (380)
51 cd05844 GT1_like_7 Glycosyltra 97.8 0.00031 6.6E-09 52.5 9.3 69 6-86 259-337 (367)
52 PF00534 Glycos_transf_1: Glyc 97.8 0.00013 2.7E-09 49.3 6.5 69 6-86 87-159 (172)
53 cd03823 GT1_ExpE7_like This fa 97.7 0.00073 1.6E-08 49.6 10.9 68 7-86 258-330 (359)
54 cd03820 GT1_amsD_like This fam 97.7 0.00039 8.5E-09 50.4 9.3 76 6-96 247-327 (348)
55 cd03795 GT1_like_4 This family 97.7 0.00032 6.9E-09 52.0 8.9 86 2-97 251-345 (357)
56 cd03800 GT1_Sucrose_synthase T 97.7 0.00068 1.5E-08 51.1 10.3 73 2-86 290-369 (398)
57 cd03822 GT1_ecORF704_like This 97.6 0.00085 1.8E-08 49.5 9.8 72 2-86 255-335 (366)
58 cd03798 GT1_wlbH_like This fam 97.6 0.0013 2.9E-08 48.0 10.7 73 2-86 266-345 (377)
59 PRK15427 colanic acid biosynth 97.6 0.0012 2.6E-08 51.1 10.8 73 2-86 286-372 (406)
60 cd03817 GT1_UGDG_like This fam 97.6 0.00066 1.4E-08 49.9 8.8 72 2-86 266-344 (374)
61 cd03808 GT1_cap1E_like This fa 97.6 0.00095 2.1E-08 48.6 9.4 69 6-86 258-330 (359)
62 cd03807 GT1_WbnK_like This fam 97.6 0.0019 4.2E-08 47.2 11.0 67 6-86 263-333 (365)
63 cd04946 GT1_AmsK_like This fam 97.5 0.0011 2.5E-08 51.2 9.7 87 2-97 296-390 (407)
64 cd03786 GT1_UDP-GlcNAc_2-Epime 97.5 8.8E-05 1.9E-09 55.8 3.0 66 7-86 273-338 (363)
65 cd04962 GT1_like_5 This family 97.5 0.002 4.4E-08 48.2 10.2 80 6-97 265-349 (371)
66 cd04949 GT1_gtfA_like This fam 97.4 0.00073 1.6E-08 50.9 7.5 85 6-99 273-360 (372)
67 COG5017 Uncharacterized conser 97.4 0.00013 2.9E-09 48.4 2.9 48 6-55 60-115 (161)
68 PLN02871 UDP-sulfoquinovose:DA 97.4 0.0032 6.8E-08 49.5 11.0 80 6-97 326-413 (465)
69 TIGR03088 stp2 sugar transfera 97.4 0.004 8.7E-08 47.0 11.0 69 6-86 267-339 (374)
70 cd03825 GT1_wcfI_like This fam 97.4 0.0039 8.4E-08 46.3 10.5 68 7-86 260-331 (365)
71 PF13844 Glyco_transf_41: Glyc 97.4 0.003 6.4E-08 50.0 10.1 83 10-102 360-445 (468)
72 cd03821 GT1_Bme6_like This fam 97.3 0.0041 8.8E-08 45.6 10.3 71 2-86 269-346 (375)
73 cd03794 GT1_wbuB_like This fam 97.3 0.0017 3.7E-08 47.8 8.2 68 7-86 290-366 (394)
74 TIGR03449 mycothiol_MshA UDP-N 97.3 0.0042 9.2E-08 47.4 10.4 80 6-97 297-381 (405)
75 cd03816 GT1_ALG1_like This fam 97.3 0.0017 3.7E-08 50.3 8.2 84 2-99 302-399 (415)
76 cd03818 GT1_ExpC_like This fam 97.3 0.0024 5.1E-08 48.9 8.9 75 2-86 288-367 (396)
77 PRK10307 putative glycosyl tra 97.3 0.0041 8.9E-08 47.8 10.2 106 2-124 291-406 (412)
78 TIGR02149 glgA_Coryne glycogen 97.2 0.0053 1.1E-07 46.4 10.3 74 6-86 275-353 (388)
79 cd03799 GT1_amsK_like This is 97.2 0.0024 5.2E-08 47.2 8.0 69 6-86 250-328 (355)
80 TIGR03087 stp1 sugar transfera 97.2 0.0017 3.6E-08 49.8 7.2 67 6-86 292-363 (397)
81 PRK09814 beta-1,6-galactofuran 97.2 0.0029 6.3E-08 47.6 8.1 79 25-120 252-330 (333)
82 PRK09922 UDP-D-galactose:(gluc 97.1 0.0044 9.5E-08 46.9 8.8 67 9-87 255-326 (359)
83 COG1519 KdtA 3-deoxy-D-manno-o 97.1 0.0039 8.4E-08 48.5 8.2 74 16-98 326-400 (419)
84 COG3980 spsG Spore coat polysa 97.1 0.0015 3.2E-08 48.5 5.6 83 7-100 223-305 (318)
85 TIGR02472 sucr_P_syn_N sucrose 97.1 0.0085 1.8E-07 46.8 10.3 62 13-86 342-407 (439)
86 cd03804 GT1_wbaZ_like This fam 97.1 0.0016 3.5E-08 48.7 6.0 75 2-86 249-327 (351)
87 cd04951 GT1_WbdM_like This fam 97.0 0.0077 1.7E-07 44.6 9.2 76 6-97 257-336 (360)
88 TIGR02918 accessory Sec system 97.0 0.0048 1E-07 49.3 8.1 93 3-101 384-483 (500)
89 PF13524 Glyco_trans_1_2: Glyc 96.9 0.015 3.2E-07 35.4 8.2 82 20-120 9-91 (92)
90 cd03805 GT1_ALG2_like This fam 96.9 0.0085 1.8E-07 45.3 8.3 83 2-97 287-377 (392)
91 cd03809 GT1_mtfB_like This fam 96.8 0.014 3E-07 43.0 9.0 79 2-97 260-345 (365)
92 cd03819 GT1_WavL_like This fam 96.8 0.013 2.9E-07 43.4 8.6 83 6-100 258-347 (355)
93 cd03811 GT1_WabH_like This fam 96.7 0.013 2.9E-07 42.4 7.7 69 6-86 258-333 (353)
94 cd03813 GT1_like_3 This family 96.7 0.033 7.2E-07 44.0 10.5 70 6-86 365-443 (475)
95 PRK10017 colanic acid biosynth 96.5 0.049 1.1E-06 42.8 10.6 100 7-124 323-423 (426)
96 cd03812 GT1_CapH_like This fam 96.4 0.017 3.6E-07 42.9 6.9 68 6-86 261-332 (358)
97 PHA01630 putative group 1 glyc 96.3 0.059 1.3E-06 40.8 9.5 107 7-124 205-329 (331)
98 PF02350 Epimerase_2: UDP-N-ac 96.3 0.0091 2E-07 45.5 5.0 75 6-97 253-327 (346)
99 PF13692 Glyco_trans_1_4: Glyc 96.2 0.005 1.1E-07 39.7 3.1 68 6-85 65-135 (135)
100 PLN02275 transferase, transfer 96.1 0.016 3.4E-07 44.3 5.7 68 2-83 294-371 (371)
101 cd03792 GT1_Trehalose_phosphor 96.1 0.097 2.1E-06 39.6 10.0 66 7-86 269-338 (372)
102 TIGR02400 trehalose_OtsA alpha 96.1 0.067 1.4E-06 42.4 9.1 97 7-124 351-455 (456)
103 PF02684 LpxB: Lipid-A-disacch 96.0 0.066 1.4E-06 41.4 8.6 102 6-113 255-365 (373)
104 COG0381 WecB UDP-N-acetylgluco 96.0 0.015 3.3E-07 44.8 4.9 101 2-123 272-372 (383)
105 PHA01633 putative glycosyl tra 95.9 0.059 1.3E-06 41.1 7.8 72 6-85 218-307 (335)
106 cd03796 GT1_PIG-A_like This fa 95.9 0.14 3E-06 39.3 10.0 71 2-86 257-334 (398)
107 TIGR02468 sucrsPsyn_pln sucros 95.8 0.1 2.2E-06 45.3 9.7 71 17-97 575-650 (1050)
108 PRK01021 lpxB lipid-A-disaccha 95.6 0.16 3.5E-06 41.6 9.6 92 6-101 483-588 (608)
109 cd04955 GT1_like_6 This family 95.6 0.17 3.7E-06 37.5 9.2 69 2-86 255-331 (363)
110 cd03791 GT1_Glycogen_synthase_ 95.3 0.11 2.4E-06 40.6 7.6 70 7-84 366-441 (476)
111 PRK15179 Vi polysaccharide bio 95.2 0.21 4.5E-06 41.7 9.2 82 6-97 586-672 (694)
112 PRK15490 Vi polysaccharide bio 95.1 0.36 7.9E-06 39.4 10.2 53 6-65 467-523 (578)
113 PLN02949 transferase, transfer 94.8 0.13 2.7E-06 40.9 6.8 80 7-99 350-438 (463)
114 TIGR02095 glgA glycogen/starch 94.5 0.27 5.8E-06 38.7 8.1 70 7-84 361-436 (473)
115 PLN03063 alpha,alpha-trehalose 94.5 0.46 1E-05 40.3 9.7 99 7-125 371-477 (797)
116 KOG4626 O-linked N-acetylgluco 94.4 0.095 2.1E-06 43.2 5.2 59 21-86 846-905 (966)
117 PRK10125 putative glycosyl tra 94.3 0.46 9.9E-06 37.0 8.8 61 6-79 301-365 (405)
118 COG4370 Uncharacterized protei 94.3 0.35 7.6E-06 36.7 7.6 60 28-96 325-387 (412)
119 cd04950 GT1_like_1 Glycosyltra 94.3 0.87 1.9E-05 34.7 10.2 66 7-86 269-341 (373)
120 cd03802 GT1_AviGT4_like This f 93.9 0.48 1E-05 34.7 7.9 72 2-85 231-308 (335)
121 PRK14098 glycogen synthase; Pr 93.8 0.44 9.6E-06 38.0 7.9 68 6-83 376-449 (489)
122 TIGR02919 accessory Sec system 93.6 0.32 6.9E-06 38.5 6.8 82 6-101 342-425 (438)
123 PRK00654 glgA glycogen synthas 93.6 0.53 1.1E-05 37.1 7.9 70 7-84 352-427 (466)
124 PLN00142 sucrose synthase 93.2 1.1 2.3E-05 38.2 9.5 51 23-83 680-730 (815)
125 PF04464 Glyphos_transf: CDP-G 93.0 0.34 7.3E-06 36.9 5.8 105 4-120 262-368 (369)
126 cd03788 GT1_TPS Trehalose-6-Ph 92.9 0.58 1.3E-05 37.0 7.2 96 7-123 356-459 (460)
127 COG0763 LpxB Lipid A disacchar 92.8 0.74 1.6E-05 35.7 7.4 110 7-123 260-379 (381)
128 TIGR02470 sucr_synth sucrose s 92.8 1.3 2.8E-05 37.6 9.4 51 23-83 657-707 (784)
129 TIGR03568 NeuC_NnaA UDP-N-acet 92.8 0.11 2.5E-06 39.8 3.0 61 6-83 276-337 (365)
130 TIGR03713 acc_sec_asp1 accesso 92.6 0.43 9.3E-06 38.5 6.2 62 8-86 425-489 (519)
131 PF04007 DUF354: Protein of un 92.2 0.75 1.6E-05 35.1 6.8 66 6-83 243-308 (335)
132 PLN02846 digalactosyldiacylgly 91.9 1.6 3.5E-05 34.8 8.5 68 4-86 293-364 (462)
133 cd03793 GT1_Glycogen_synthase_ 91.6 0.93 2E-05 37.2 7.0 80 4-86 467-553 (590)
134 cd03806 GT1_ALG11_like This fa 91.2 0.88 1.9E-05 35.4 6.4 67 7-86 320-393 (419)
135 PLN02501 digalactosyldiacylgly 91.2 2 4.2E-05 36.4 8.5 65 7-86 614-682 (794)
136 COG3914 Spy Predicted O-linked 90.7 1.1 2.3E-05 36.7 6.4 41 20-62 518-560 (620)
137 cd01635 Glycosyltransferase_GT 89.6 0.46 9.9E-06 32.3 3.3 34 8-43 178-215 (229)
138 PLN02316 synthase/transferase 89.4 4.9 0.00011 35.3 9.8 71 7-85 915-998 (1036)
139 PF06506 PrpR_N: Propionate ca 89.2 0.34 7.4E-06 33.3 2.4 68 10-84 33-123 (176)
140 PRK04885 ppnK inorganic polyph 89.0 1 2.2E-05 33.3 4.8 53 11-85 35-93 (265)
141 PF06258 Mito_fiss_Elm1: Mitoc 88.2 1.3 2.8E-05 33.4 5.1 38 4-43 221-259 (311)
142 PRK02155 ppnK NAD(+)/NADH kina 87.8 1.6 3.6E-05 32.6 5.4 54 11-86 63-120 (291)
143 PRK14077 pnk inorganic polypho 87.7 1.5 3.2E-05 32.8 5.0 55 10-86 63-121 (287)
144 PLN02939 transferase, transfer 87.6 4.6 9.9E-05 35.2 8.4 70 7-84 852-930 (977)
145 PRK01911 ppnK inorganic polyph 87.2 1.7 3.8E-05 32.5 5.2 55 10-86 63-121 (292)
146 PRK02649 ppnK inorganic polyph 86.9 1.7 3.6E-05 32.8 5.0 55 10-86 67-125 (305)
147 PRK14501 putative bifunctional 86.4 2.5 5.3E-05 35.5 6.2 102 7-125 357-462 (726)
148 PRK04539 ppnK inorganic polyph 86.0 1.9 4.2E-05 32.4 4.9 55 10-86 67-125 (296)
149 PRK03378 ppnK inorganic polyph 85.3 2.1 4.5E-05 32.1 4.8 55 10-86 62-120 (292)
150 PRK02231 ppnK inorganic polyph 84.6 3.3 7.1E-05 30.7 5.5 57 6-84 37-97 (272)
151 PLN02935 Bifunctional NADH kin 83.7 2.5 5.4E-05 34.1 4.8 55 10-86 261-319 (508)
152 PRK03372 ppnK inorganic polyph 83.5 2.4 5.3E-05 32.0 4.5 55 10-86 71-129 (306)
153 PF05693 Glycogen_syn: Glycoge 83.4 1.9 4.1E-05 35.6 4.1 92 3-101 461-565 (633)
154 PRK01231 ppnK inorganic polyph 81.7 4.2 9.2E-05 30.5 5.2 54 11-86 62-119 (295)
155 PRK01185 ppnK inorganic polyph 81.3 4 8.7E-05 30.3 4.9 54 11-86 52-106 (271)
156 PRK14075 pnk inorganic polypho 80.5 4.5 9.7E-05 29.7 4.9 54 11-86 41-95 (256)
157 PRK03501 ppnK inorganic polyph 79.9 4.3 9.3E-05 30.0 4.6 55 11-86 39-98 (264)
158 KOG0853 Glycosyltransferase [C 78.5 1.4 3.1E-05 35.4 1.9 69 17-96 370-441 (495)
159 PRK14076 pnk inorganic polypho 77.6 4.9 0.00011 32.9 4.7 54 11-86 348-405 (569)
160 PRK02797 4-alpha-L-fucosyltran 76.5 13 0.00027 28.4 6.2 71 5-83 220-292 (322)
161 PRK14099 glycogen synthase; Pr 75.8 17 0.00036 29.1 7.2 69 10-86 368-448 (485)
162 COG0438 RfaG Glycosyltransfera 73.1 29 0.00064 24.3 10.7 68 7-86 272-343 (381)
163 PRK03708 ppnK inorganic polyph 73.1 7.2 0.00016 29.0 4.3 53 11-85 57-112 (277)
164 PLN02929 NADH kinase 72.7 8.7 0.00019 29.0 4.6 68 9-86 62-138 (301)
165 PF05159 Capsule_synth: Capsul 72.5 4.2 9.2E-05 29.6 2.9 34 4-40 192-225 (269)
166 COG3195 Uncharacterized protei 72.1 28 0.0006 24.1 6.5 55 46-104 111-165 (176)
167 PRK15424 propionate catabolism 71.5 15 0.00031 30.1 5.9 29 11-42 64-92 (538)
168 COG3660 Predicted nucleoside-d 70.9 21 0.00045 26.9 6.1 59 3-64 236-299 (329)
169 TIGR02329 propionate_PrpR prop 70.2 17 0.00036 29.6 6.0 29 11-42 54-82 (526)
170 PRK04761 ppnK inorganic polyph 68.1 13 0.00028 27.2 4.6 29 10-40 24-56 (246)
171 PLN03064 alpha,alpha-trehalose 66.9 57 0.0012 28.7 8.8 98 7-125 455-561 (934)
172 PLN02727 NAD kinase 66.4 14 0.0003 32.3 5.0 55 10-86 742-800 (986)
173 COG2327 WcaK Polysaccharide py 65.6 65 0.0014 25.3 9.1 75 8-94 282-357 (385)
174 TIGR02398 gluc_glyc_Psyn gluco 65.1 73 0.0016 25.8 8.6 97 8-125 378-482 (487)
175 PF04558 tRNA_synt_1c_R1: Glut 64.7 11 0.00024 25.9 3.5 31 47-86 103-133 (164)
176 PF08006 DUF1700: Protein of u 63.1 46 0.001 22.8 6.5 42 71-112 2-43 (181)
177 PF07429 Glyco_transf_56: 4-al 60.5 38 0.00082 26.3 6.0 72 5-84 259-332 (360)
178 PF11071 DUF2872: Protein of u 59.1 33 0.00071 22.8 4.7 32 6-39 67-106 (141)
179 PLN02859 glutamine-tRNA ligase 58.5 31 0.00066 29.7 5.6 65 49-122 107-177 (788)
180 cd07039 TPP_PYR_POX Pyrimidine 57.5 57 0.0012 22.0 6.2 27 14-40 64-96 (164)
181 TIGR00725 conserved hypothetic 55.4 16 0.00035 24.7 3.0 37 5-41 84-123 (159)
182 PF06204 CBM_X: Putative carbo 53.5 3.1 6.7E-05 24.1 -0.6 22 3-24 25-46 (66)
183 PRK00561 ppnK inorganic polyph 51.4 37 0.00081 25.1 4.6 29 10-40 32-64 (259)
184 PHA02754 hypothetical protein; 51.0 34 0.00073 19.4 3.3 25 78-105 6-30 (67)
185 PF06785 UPF0242: Uncharacteri 49.5 15 0.00033 28.2 2.3 77 23-102 15-101 (401)
186 TIGR03646 YtoQ_fam YtoQ family 46.5 53 0.0011 21.9 4.2 31 7-39 71-109 (144)
187 cd07037 TPP_PYR_MenD Pyrimidin 45.9 19 0.00042 24.4 2.2 27 14-40 61-93 (162)
188 PF12363 DUF3647: Phage protei 44.0 83 0.0018 20.0 5.9 53 47-104 48-100 (113)
189 cd01147 HemV-2 Metal binding p 43.6 86 0.0019 22.2 5.5 10 32-41 97-106 (262)
190 cd01141 TroA_d Periplasmic bin 43.5 99 0.0022 20.7 5.6 9 32-40 91-99 (186)
191 PLN02880 tyrosine decarboxylas 43.2 74 0.0016 25.6 5.4 69 14-83 147-234 (490)
192 KOG2199 Signal transducing ada 42.3 67 0.0015 25.5 4.8 61 57-126 75-139 (462)
193 PF01513 NAD_kinase: ATP-NAD k 42.0 24 0.00051 26.1 2.4 31 9-41 74-108 (285)
194 PF12000 Glyco_trans_4_3: Gkyc 41.2 19 0.00042 24.8 1.7 29 11-41 66-96 (171)
195 PF00982 Glyco_transf_20: Glyc 40.5 2E+02 0.0042 23.3 7.8 101 7-125 368-474 (474)
196 PRK02645 ppnK inorganic polyph 40.4 24 0.00053 26.5 2.2 29 11-41 57-89 (305)
197 TIGR02836 spore_IV_A stage IV 40.3 1.2E+02 0.0025 24.7 5.9 75 7-84 139-234 (492)
198 PRK12446 undecaprenyldiphospho 40.1 26 0.00056 26.7 2.4 27 11-39 91-120 (352)
199 PF10686 DUF2493: Protein of u 38.2 22 0.00048 20.7 1.4 30 10-41 30-65 (71)
200 TIGR02482 PFKA_ATP 6-phosphofr 38.0 41 0.00089 25.4 3.1 37 8-44 86-126 (301)
201 PF05225 HTH_psq: helix-turn-h 37.8 64 0.0014 16.9 3.5 25 71-97 1-25 (45)
202 TIGR03164 UHCUDC OHCU decarbox 37.7 1.3E+02 0.0028 20.4 6.7 55 46-104 98-152 (157)
203 PF00282 Pyridoxal_deC: Pyrido 37.4 1E+02 0.0022 23.8 5.3 70 14-85 104-191 (373)
204 PRK14116 gpmA phosphoglyceromu 37.0 20 0.00044 25.5 1.3 22 15-36 177-198 (228)
205 COG2022 ThiG Uncharacterized e 36.9 62 0.0013 23.8 3.7 49 33-82 128-181 (262)
206 PRK13057 putative lipid kinase 36.8 36 0.00078 25.0 2.6 30 10-41 49-82 (287)
207 PF05690 ThiG: Thiazole biosyn 36.8 46 0.001 24.4 3.1 49 33-82 121-174 (247)
208 PRK13932 stationary phase surv 36.2 34 0.00074 25.3 2.4 29 13-41 104-133 (257)
209 PF13499 EF-hand_7: EF-hand do 36.1 49 0.0011 18.1 2.6 23 62-84 9-31 (66)
210 COG1422 Predicted membrane pro 35.5 1.2E+02 0.0027 21.5 4.9 71 24-109 23-95 (201)
211 TIGR00087 surE 5'/3'-nucleotid 35.1 36 0.00077 24.9 2.3 29 13-41 99-128 (244)
212 PF15586 Imm47: Immunity prote 34.6 57 0.0012 21.0 3.0 42 57-102 67-108 (116)
213 PLN02590 probable tyrosine dec 34.5 1.7E+02 0.0037 24.1 6.3 68 14-82 195-281 (539)
214 PF15024 Glyco_transf_18: Glyc 34.3 77 0.0017 26.2 4.3 75 6-85 336-430 (559)
215 TIGR00661 MJ1255 conserved hyp 33.8 38 0.00082 25.2 2.4 28 10-39 92-119 (321)
216 TIGR00421 ubiX_pad polyprenyl 33.5 66 0.0014 22.3 3.4 33 28-61 107-143 (181)
217 PF01497 Peripla_BP_2: Peripla 33.4 1.6E+02 0.0035 20.3 6.0 12 28-39 54-65 (238)
218 PRK13059 putative lipid kinase 32.8 45 0.00098 24.7 2.6 26 16-41 59-90 (295)
219 TIGR03147 cyt_nit_nrfF cytochr 32.8 1.1E+02 0.0024 20.1 4.1 31 93-123 57-87 (126)
220 PRK13798 putative OHCU decarbo 32.3 1.7E+02 0.0036 20.1 6.5 55 46-104 103-157 (166)
221 PF01372 Melittin: Melittin; 32.2 7.5 0.00016 18.0 -1.0 17 22-38 1-17 (26)
222 PRK13463 phosphatase PhoE; Pro 31.9 29 0.00063 24.1 1.4 23 15-37 146-168 (203)
223 TIGR03848 MSMEG_4193 probable 31.7 35 0.00076 23.6 1.8 23 16-38 148-170 (204)
224 CHL00162 thiG thiamin biosynth 31.7 90 0.002 23.2 3.9 47 33-80 135-186 (267)
225 cd07038 TPP_PYR_PDC_IPDC_like 31.6 45 0.00097 22.4 2.2 27 14-40 60-92 (162)
226 PRK13935 stationary phase surv 31.2 41 0.00089 24.8 2.1 29 13-41 99-128 (253)
227 PRK13931 stationary phase surv 31.2 43 0.00093 24.8 2.2 29 13-41 100-129 (261)
228 KOG0595 Serine/threonine-prote 30.8 13 0.00028 29.3 -0.5 36 24-62 168-204 (429)
229 PF10083 DUF2321: Uncharacteri 30.7 1.7E+02 0.0038 20.0 4.9 33 71-105 102-134 (158)
230 PRK13054 lipid kinase; Reviewe 30.6 55 0.0012 24.3 2.8 27 15-41 58-92 (300)
231 cd07035 TPP_PYR_POX_like Pyrim 30.6 53 0.0011 21.5 2.5 28 14-41 60-93 (155)
232 PRK14119 gpmA phosphoglyceromu 30.5 33 0.0007 24.4 1.5 22 15-36 177-198 (228)
233 PRK11914 diacylglycerol kinase 30.5 51 0.0011 24.4 2.6 28 12-41 65-96 (306)
234 PRK10144 formate-dependent nit 30.4 1.3E+02 0.0027 19.8 4.1 31 93-123 57-87 (126)
235 PF09547 Spore_IV_A: Stage IV 30.3 1.7E+02 0.0037 23.8 5.4 73 9-84 142-234 (492)
236 PF09349 OHCU_decarbox: OHCU d 29.6 1.8E+02 0.0039 19.6 6.5 56 46-105 101-156 (159)
237 TIGR02483 PFK_mixed phosphofru 29.6 69 0.0015 24.4 3.1 35 9-43 90-127 (324)
238 COG0297 GlgA Glycogen synthase 29.5 2.4E+02 0.0052 22.9 6.3 55 24-84 383-441 (487)
239 TIGR00173 menD 2-succinyl-5-en 29.4 1.1E+02 0.0024 24.0 4.4 26 14-39 64-95 (432)
240 PRK10117 trehalose-6-phosphate 29.3 3.1E+02 0.0068 22.2 7.9 58 57-125 396-453 (474)
241 cd00763 Bacterial_PFK Phosphof 29.3 68 0.0015 24.4 3.1 36 8-43 87-125 (317)
242 PRK03202 6-phosphofructokinase 28.8 70 0.0015 24.4 3.1 36 9-44 89-127 (320)
243 cd03789 GT1_LPS_heptosyltransf 28.6 58 0.0013 23.6 2.6 31 6-39 193-223 (279)
244 COG2230 Cfa Cyclopropane fatty 28.4 56 0.0012 24.5 2.4 39 20-59 80-121 (283)
245 COG1887 TagB Putative glycosyl 28.1 3E+02 0.0064 21.6 7.5 104 4-120 279-385 (388)
246 TIGR03162 ribazole_cobC alpha- 27.9 37 0.0008 22.7 1.3 22 15-36 140-161 (177)
247 PRK08334 translation initiatio 27.9 22 0.00049 27.5 0.3 23 17-39 163-197 (356)
248 PRK14071 6-phosphofructokinase 27.8 74 0.0016 24.6 3.1 36 8-43 102-141 (360)
249 PRK07313 phosphopantothenoylcy 27.8 1.8E+02 0.004 20.0 4.8 51 33-84 113-179 (182)
250 PF07583 PSCyt2: Protein of un 27.7 2.3E+02 0.005 20.2 5.9 56 70-128 52-115 (208)
251 PRK15004 alpha-ribazole phosph 27.7 37 0.0008 23.4 1.3 23 15-37 144-166 (199)
252 PRK14118 gpmA phosphoglyceromu 27.5 38 0.00082 24.1 1.4 22 15-36 176-197 (227)
253 smart00046 DAGKc Diacylglycero 27.0 46 0.001 21.2 1.6 27 16-42 52-87 (124)
254 TIGR00147 lipid kinase, YegS/R 26.9 52 0.0011 24.1 2.1 26 16-41 60-91 (293)
255 PF09884 DUF2111: Uncharacteri 26.5 26 0.00056 21.3 0.3 17 28-44 53-69 (84)
256 KOG3877 NADH:ubiquinone oxidor 26.5 1.7E+02 0.0037 22.5 4.6 47 15-62 193-244 (393)
257 PF05014 Nuc_deoxyrib_tr: Nucl 26.5 58 0.0013 20.3 2.0 35 7-41 57-97 (113)
258 PRK13934 stationary phase surv 26.3 47 0.001 24.7 1.7 25 17-41 102-127 (266)
259 PRK00346 surE 5'(3')-nucleotid 26.1 61 0.0013 23.8 2.3 27 15-41 97-124 (250)
260 COG1528 Ftn Ferritin-like prot 25.9 2.3E+02 0.005 19.6 6.5 50 52-104 61-110 (167)
261 TIGR00730 conserved hypothetic 25.9 82 0.0018 21.8 2.8 24 16-39 100-132 (178)
262 COG4709 Predicted membrane pro 25.9 2.5E+02 0.0053 19.9 6.4 39 71-109 2-40 (195)
263 PRK08527 acetolactate synthase 25.8 60 0.0013 26.4 2.4 28 13-40 66-99 (563)
264 PRK14117 gpmA phosphoglyceromu 25.7 43 0.00092 23.9 1.4 23 15-37 177-199 (230)
265 COG0380 OtsA Trehalose-6-phosp 25.5 3.8E+02 0.0081 21.9 7.3 51 69-125 429-479 (486)
266 TIGR03180 UraD_2 OHCU decarbox 25.2 2.2E+02 0.0049 19.2 6.6 55 46-104 98-152 (158)
267 PTZ00122 phosphoglycerate muta 25.1 50 0.0011 24.8 1.7 22 16-37 236-257 (299)
268 PF09988 DUF2227: Uncharacteri 25.1 21 0.00046 24.6 -0.2 29 2-33 66-95 (169)
269 PF15079 DUF4546: Domain of un 25.1 2.4E+02 0.0053 19.6 6.3 44 73-125 50-93 (205)
270 PRK06882 acetolactate synthase 25.0 62 0.0013 26.4 2.3 28 13-40 67-100 (574)
271 PF03918 CcmH: Cytochrome C bi 24.8 1.5E+02 0.0032 19.9 3.8 31 94-124 58-88 (148)
272 KOG0574 STE20-like serine/thre 24.8 1.6E+02 0.0035 22.9 4.3 32 69-103 125-156 (502)
273 COG3265 GntK Gluconate kinase 24.5 2.4E+02 0.0052 19.4 5.5 62 18-84 3-65 (161)
274 PRK13933 stationary phase surv 24.2 66 0.0014 23.7 2.2 28 14-41 101-129 (253)
275 PRK05772 translation initiatio 24.2 28 0.00061 27.1 0.2 32 8-39 170-205 (363)
276 PRK01112 phosphoglyceromutase; 24.1 47 0.001 23.7 1.4 25 13-37 174-198 (228)
277 PRK13055 putative lipid kinase 24.1 84 0.0018 23.8 2.8 26 16-41 62-93 (334)
278 COG1052 LdhA Lactate dehydroge 24.0 1.5E+02 0.0032 22.7 4.1 59 2-81 191-252 (324)
279 PRK06112 acetolactate synthase 23.8 63 0.0014 26.4 2.2 27 14-40 75-107 (578)
280 PF00933 Glyco_hydro_3: Glycos 23.7 2.6E+02 0.0056 20.7 5.3 49 24-83 249-297 (299)
281 PF01975 SurE: Survival protei 23.6 41 0.00088 23.7 0.9 30 15-44 106-136 (196)
282 PRK03482 phosphoglycerate muta 23.4 55 0.0012 22.8 1.6 21 16-36 146-166 (215)
283 PLN02470 acetolactate synthase 23.1 75 0.0016 26.0 2.5 28 13-40 76-109 (585)
284 PRK01295 phosphoglyceromutase; 23.0 53 0.0012 23.0 1.4 23 15-37 153-175 (206)
285 TIGR03811 tyr_de_CO2_Ent tyros 22.9 2.8E+02 0.0061 23.2 5.7 32 52-83 238-273 (608)
286 PF00036 EF-hand_1: EF hand; 22.8 72 0.0016 14.9 1.5 19 63-81 10-28 (29)
287 PTZ00123 phosphoglycerate muta 22.7 52 0.0011 23.6 1.4 22 15-36 164-185 (236)
288 PLN03032 serine decarboxylase; 22.7 2.4E+02 0.0051 21.9 5.0 65 15-81 87-157 (374)
289 PRK06029 3-octaprenyl-4-hydrox 22.4 1.6E+02 0.0035 20.5 3.7 34 29-63 111-148 (185)
290 PF02776 TPP_enzyme_N: Thiamin 21.8 63 0.0014 21.7 1.6 28 14-41 65-98 (172)
291 PF12689 Acid_PPase: Acid Phos 21.8 1.1E+02 0.0025 21.0 2.8 47 31-81 119-165 (169)
292 COG0496 SurE Predicted acid ph 21.7 1.5E+02 0.0032 21.9 3.6 25 18-42 101-126 (252)
293 COG4273 Uncharacterized conser 21.4 84 0.0018 20.8 2.0 20 20-39 54-73 (135)
294 PRK06555 pyrophosphate--fructo 21.3 95 0.0021 24.6 2.6 35 9-43 108-151 (403)
295 cd01451 vWA_Magnesium_chelatas 21.1 2.3E+02 0.0051 18.9 4.3 46 31-80 130-177 (178)
296 PRK08322 acetolactate synthase 21.1 85 0.0018 25.3 2.4 28 13-40 63-96 (547)
297 PRK05920 aromatic acid decarbo 21.1 1.4E+02 0.003 21.2 3.2 32 28-60 125-160 (204)
298 TIGR01258 pgm_1 phosphoglycera 20.8 61 0.0013 23.5 1.4 23 15-37 176-198 (245)
299 COG0061 nadF NAD kinase [Coenz 20.8 2.2E+02 0.0047 21.1 4.4 51 11-84 55-110 (281)
300 PF08542 Rep_fac_C: Replicatio 20.7 1.9E+02 0.0042 16.8 6.1 50 69-126 2-51 (89)
301 PF11248 DUF3046: Protein of u 20.7 65 0.0014 18.5 1.2 20 17-36 27-46 (63)
302 KOG2635 Medium subunit of clat 20.3 2.6E+02 0.0057 22.6 4.8 38 74-111 142-179 (512)
303 PRK13797 putative bifunctional 20.3 4.6E+02 0.01 21.6 6.3 55 46-104 453-507 (516)
304 PRK08266 hypothetical protein; 20.3 93 0.002 25.1 2.5 27 14-40 69-101 (542)
305 COG4231 Indolepyruvate ferredo 20.2 3E+02 0.0065 23.3 5.3 65 18-85 457-543 (640)
306 PLN02205 alpha,alpha-trehalose 20.1 6E+02 0.013 22.3 7.7 57 57-124 494-550 (854)
No 1
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=3.8e-34 Score=222.56 Aligned_cols=124 Identities=40% Similarity=0.819 Sum_probs=115.7
Q ss_pred CCCChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCC-CCCccHHHHHHHH
Q 035557 1 NWCPQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADD-KGIVRREAIAHCI 79 (129)
Q Consensus 1 ~w~pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~-~~~~~~~~l~~~i 79 (129)
+|+||..||+|+++++|||||||||++|++++|||||++|++.||+.||+++++.||+|+.+...+ ++.+++++|.++|
T Consensus 330 ~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av 409 (456)
T PLN02210 330 EWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCI 409 (456)
T ss_pred ecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999669999986431 2368999999999
Q ss_pred HHHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 035557 80 REILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSI 124 (129)
Q Consensus 80 ~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 124 (129)
+++|.+++|+++|+|+++|++.+++++++||||..++++|+++++
T Consensus 410 ~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 410 EAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 999988878899999999999999999999999999999999875
No 2
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=4.4e-34 Score=223.00 Aligned_cols=127 Identities=48% Similarity=0.917 Sum_probs=118.1
Q ss_pred CCCChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCC--CCCCccHHHHHHH
Q 035557 1 NWCPQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPAD--DKGIVRREAIAHC 78 (129)
Q Consensus 1 ~w~pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~--~~~~~~~~~l~~~ 78 (129)
+|+||.+||+|+++++||||||+||++|++++|||||++|++.||+.|++++++.||+|+.+... ..+.++.++|.++
T Consensus 343 ~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~ 422 (480)
T PLN02555 343 QWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAEC 422 (480)
T ss_pred ecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999421 1226899999999
Q ss_pred HHHHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhCC
Q 035557 79 IREILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSISSK 127 (129)
Q Consensus 79 i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~~ 127 (129)
|+++|.+++|+++|+|+++|++..++++.+||||..++++|++++.+..
T Consensus 423 v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~~~ 471 (480)
T PLN02555 423 LLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVRKS 471 (480)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhcc
Confidence 9999988888999999999999999999999999999999999998753
No 3
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=5.6e-34 Score=221.26 Aligned_cols=121 Identities=36% Similarity=0.674 Sum_probs=115.8
Q ss_pred CCCChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHH
Q 035557 1 NWCPQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIR 80 (129)
Q Consensus 1 ~w~pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~ 80 (129)
+|+||.+||+|+++++||||||+||++|++++|||||++|++.||+.||+++++.||+|+.+. . .+++++|.++|+
T Consensus 330 ~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~-~---~~~~~~v~~av~ 405 (451)
T PLN02410 330 KWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVE-G---DLDRGAVERAVK 405 (451)
T ss_pred ccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeC-C---cccHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999999996 3 789999999999
Q ss_pred HHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhh
Q 035557 81 EILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSIS 125 (129)
Q Consensus 81 ~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 125 (129)
++|.+++|++||++++++++.+++++.+||||..++++|++.++.
T Consensus 406 ~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 406 RLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 999887788999999999999999999999999999999999875
No 4
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=8.3e-34 Score=219.95 Aligned_cols=124 Identities=56% Similarity=1.091 Sum_probs=116.0
Q ss_pred CCCChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCC-CCCccHHHHHHHH
Q 035557 1 NWCPQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADD-KGIVRREAIAHCI 79 (129)
Q Consensus 1 ~w~pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~-~~~~~~~~l~~~i 79 (129)
+|+||.+||+|+++++|||||||||++|++++|||||++|++.||+.||+++++.||+|+.+..++ ++.++.++|.++|
T Consensus 323 ~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av 402 (449)
T PLN02173 323 KWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSI 402 (449)
T ss_pred CCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999999986542 1247999999999
Q ss_pred HHHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 035557 80 REILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSI 124 (129)
Q Consensus 80 ~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 124 (129)
+++|.+++|+++|++++++++..++++.+||||.+++++|++++.
T Consensus 403 ~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 403 KEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 999988888899999999999999999999999999999999885
No 5
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.1e-33 Score=220.10 Aligned_cols=126 Identities=33% Similarity=0.612 Sum_probs=114.0
Q ss_pred CCCChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCC----CCCCccHHHHH
Q 035557 1 NWCPQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPAD----DKGIVRREAIA 76 (129)
Q Consensus 1 ~w~pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~----~~~~~~~~~l~ 76 (129)
+|+||.+||+|+++++|||||||||++|++++|||||++|+++||+.||+++++.||+|+.+..+ .++.++.++|.
T Consensus 338 ~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~ 417 (468)
T PLN02207 338 GWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIE 417 (468)
T ss_pred EeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHH
Confidence 59999999999999999999999999999999999999999999999999999977999977321 12256999999
Q ss_pred HHHHHHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhCC
Q 035557 77 HCIREILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSISSK 127 (129)
Q Consensus 77 ~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~~ 127 (129)
++|+++|.+ ++++||+|++++++.+++++.+||||..++++|++++++.+
T Consensus 418 ~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~~~~ 467 (468)
T PLN02207 418 TAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVIGIK 467 (468)
T ss_pred HHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhcc
Confidence 999999973 35699999999999999999999999999999999998754
No 6
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=3.5e-33 Score=218.57 Aligned_cols=126 Identities=40% Similarity=0.690 Sum_probs=115.1
Q ss_pred CCCChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCC-----CCCCccHHHH
Q 035557 1 NWCPQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPAD-----DKGIVRREAI 75 (129)
Q Consensus 1 ~w~pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~-----~~~~~~~~~l 75 (129)
.|+||.+||+|+++++||||||+||++|++++|||||++|++.||+.||+++++.|++|+.+... +.+.+++++|
T Consensus 351 ~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l 430 (482)
T PLN03007 351 GWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKV 430 (482)
T ss_pred cCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHH
Confidence 59999999999999999999999999999999999999999999999999999877777776321 1226899999
Q ss_pred HHHHHHHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhC
Q 035557 76 AHCIREILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSISS 126 (129)
Q Consensus 76 ~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 126 (129)
.++|+++|.+++|++||++++++++.+++++.+||||..++++|++.+.+.
T Consensus 431 ~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l~~~v~~~~~~ 481 (482)
T PLN03007 431 EKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFNDLNKFMEELNSR 481 (482)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence 999999999888889999999999999999999999999999999998764
No 7
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.8e-33 Score=218.25 Aligned_cols=124 Identities=31% Similarity=0.569 Sum_probs=112.3
Q ss_pred CCCChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCC--------CCCCccH
Q 035557 1 NWCPQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPAD--------DKGIVRR 72 (129)
Q Consensus 1 ~w~pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~--------~~~~~~~ 72 (129)
+|+||.+||+|+++++||||||+||++|++++|||||++|+++||+.||+++.+.||+|+.+... ..+.+++
T Consensus 348 ~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~ 427 (481)
T PLN02554 348 GWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTA 427 (481)
T ss_pred eeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcH
Confidence 49999999999999999999999999999999999999999999999997655555999998631 1136899
Q ss_pred HHHHHHHHHHHh-ChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhCC
Q 035557 73 EAIAHCIREILE-GERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSISSK 127 (129)
Q Consensus 73 ~~l~~~i~~~l~-~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~~ 127 (129)
++|.++|+++|. ++ +||+|++++++.+++++.+||||..++++|+++++++.
T Consensus 428 e~l~~av~~vm~~~~---~~r~~a~~l~~~~~~av~~gGss~~~l~~lv~~~~~~~ 480 (481)
T PLN02554 428 EEIERGIRCLMEQDS---DVRKRVKEMSEKCHVALMDGGSSHTALKKFIQDVTKNI 480 (481)
T ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhC
Confidence 999999999996 44 99999999999999999999999999999999998864
No 8
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=6.3e-33 Score=216.86 Aligned_cols=126 Identities=29% Similarity=0.554 Sum_probs=115.1
Q ss_pred CCCChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCC--CCCccHHHHHHH
Q 035557 1 NWCPQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADD--KGIVRREAIAHC 78 (129)
Q Consensus 1 ~w~pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~--~~~~~~~~l~~~ 78 (129)
.|+||..||+|+++++|||||||||++|++++|||||++|+++||+.||+++++.||+|+.+..++ ++.+++++|.++
T Consensus 345 ~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~a 424 (480)
T PLN00164 345 TWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERA 424 (480)
T ss_pred ecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHH
Confidence 499999999999999999999999999999999999999999999999999988779999985331 225799999999
Q ss_pred HHHHHhCh--hhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhC
Q 035557 79 IREILEGE--RCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSISS 126 (129)
Q Consensus 79 i~~~l~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 126 (129)
|+++|.++ +|+.+|++++++++.+++++.+||||..++++|+++++..
T Consensus 425 v~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~v~~~~~~ 474 (480)
T PLN00164 425 VRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRLAREIRHG 474 (480)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 99999764 4789999999999999999999999999999999999864
No 9
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.3e-32 Score=214.26 Aligned_cols=125 Identities=42% Similarity=0.790 Sum_probs=115.4
Q ss_pred CCCChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCC--CCCCccHHHHHHH
Q 035557 1 NWCPQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPAD--DKGIVRREAIAHC 78 (129)
Q Consensus 1 ~w~pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~--~~~~~~~~~l~~~ 78 (129)
+|+||.+||+|+++++||||||+||++|++++|||||++|++.||+.||+++++.||+|+.+... +.+.+++++|.++
T Consensus 329 ~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~a 408 (459)
T PLN02448 329 PWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAEL 408 (459)
T ss_pred ccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999988999998632 1236799999999
Q ss_pred HHHHHhC--hhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhh
Q 035557 79 IREILEG--ERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSIS 125 (129)
Q Consensus 79 i~~~l~~--~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 125 (129)
|+++|.+ ++|++||++++++++.+++++.+||||.+++++|++.++.
T Consensus 409 v~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 409 VKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 9999975 4678999999999999999999999999999999999874
No 10
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=1.2e-32 Score=213.85 Aligned_cols=123 Identities=47% Similarity=0.989 Sum_probs=113.0
Q ss_pred CCCChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHH
Q 035557 1 NWCPQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIR 80 (129)
Q Consensus 1 ~w~pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~ 80 (129)
+|+||.+||+|+++++||||||+||++|++++|||+|++|++.||+.||+++++.||+|+.+..+.++.+++++|.++|+
T Consensus 333 ~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~ 412 (455)
T PLN02152 333 SWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLE 412 (455)
T ss_pred eeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999988999888644333579999999999
Q ss_pred HHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 035557 81 EILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSI 124 (129)
Q Consensus 81 ~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 124 (129)
++|++ ++++||+|++++++..+++..+||||..++++|+++++
T Consensus 413 ~vm~~-~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i~ 455 (455)
T PLN02152 413 AVMEE-KSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTLC 455 (455)
T ss_pred HHHhh-hHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhC
Confidence 99974 45689999999999999999999999999999999864
No 11
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.6e-32 Score=214.20 Aligned_cols=124 Identities=31% Similarity=0.596 Sum_probs=114.3
Q ss_pred CCCChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHH
Q 035557 1 NWCPQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIR 80 (129)
Q Consensus 1 ~w~pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~ 80 (129)
+|+||.+||+|+++++||||||+||++|++++|||||++|++.||+.||+++++.||+|+.++.. ++.++.++|.++|+
T Consensus 344 ~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~-~~~~~~~~l~~av~ 422 (481)
T PLN02992 344 SWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDP-KEVISRSKIEALVR 422 (481)
T ss_pred ecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCC-CCcccHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999997555999999752 12689999999999
Q ss_pred HHHhChhhHHHHHHHHHHHHHHHHHhh--cCCChHHHHHHHHHHHhh
Q 035557 81 EILEGERCKEIRQNAGKWSNFAKEAVT--KGGSSDKNIDDFVANSIS 125 (129)
Q Consensus 81 ~~l~~~~~~~~~~~a~~l~~~~~~~~~--~~g~~~~~~~~~~~~l~~ 125 (129)
++|.+++|+++|++++++++.+++++. +||||.+++++|++.++.
T Consensus 423 ~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v~~~~~ 469 (481)
T PLN02992 423 KVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVTKECQR 469 (481)
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHH
Confidence 999888888999999999999999994 599999999999998875
No 12
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.6e-32 Score=214.65 Aligned_cols=129 Identities=33% Similarity=0.718 Sum_probs=117.5
Q ss_pred CCCChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCC-------CC--C-Cc
Q 035557 1 NWCPQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPAD-------DK--G-IV 70 (129)
Q Consensus 1 ~w~pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~-------~~--~-~~ 70 (129)
.|+||..||+|+++++||||||+||++|++++|||||++|++.||+.|++++++.||+|+.+... ++ + .+
T Consensus 350 ~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v 429 (491)
T PLN02534 350 GWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLV 429 (491)
T ss_pred CCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCcc
Confidence 59999999999999999999999999999999999999999999999999999999999988421 11 1 47
Q ss_pred cHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhCCCC
Q 035557 71 RREAIAHCIREILE--GERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSISSKSF 129 (129)
Q Consensus 71 ~~~~l~~~i~~~l~--~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~ 129 (129)
++++|.++|+++|. +++|+++|+||++|++.+++++.+||||.+++++|++++++..|+
T Consensus 430 ~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl~~fv~~i~~~~~~ 490 (491)
T PLN02534 430 KKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINLSILIQDVLKQQSL 490 (491)
T ss_pred CHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcc
Confidence 99999999999997 466789999999999999999999999999999999999876653
No 13
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.7e-32 Score=214.33 Aligned_cols=126 Identities=33% Similarity=0.633 Sum_probs=113.8
Q ss_pred CCCChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCC----CCCCccHHHHH
Q 035557 1 NWCPQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPAD----DKGIVRREAIA 76 (129)
Q Consensus 1 ~w~pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~----~~~~~~~~~l~ 76 (129)
.|+||..||+|+++++|||||||||++|++++|||||++|++.||+.||+++.+.||+|+.+... +.+.+++++|.
T Consensus 346 ~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~ 425 (475)
T PLN02167 346 GWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIA 425 (475)
T ss_pred ccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHH
Confidence 59999999999999999999999999999999999999999999999998866666999998642 11257999999
Q ss_pred HHHHHHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhCCC
Q 035557 77 HCIREILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSISSKS 128 (129)
Q Consensus 77 ~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~ 128 (129)
++|+++|.++ ++||++++++++.+++++.+||||..++++|+++++...|
T Consensus 426 ~av~~~m~~~--~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~i~~~~~ 475 (475)
T PLN02167 426 GAVRSLMDGE--DVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDDLLGDHS 475 (475)
T ss_pred HHHHHHhcCC--HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCC
Confidence 9999999754 3899999999999999999999999999999999987654
No 14
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1.8e-32 Score=213.18 Aligned_cols=124 Identities=30% Similarity=0.591 Sum_probs=114.1
Q ss_pred CCCChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecC-CCCCCccHHHHHHHH
Q 035557 1 NWCPQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPA-DDKGIVRREAIAHCI 79 (129)
Q Consensus 1 ~w~pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~-~~~~~~~~~~l~~~i 79 (129)
.|+||.+||+|+++++|||||||||++|++++|||||++|++.||+.||+++++.||+|+.+.. .+.+.++.++|.++|
T Consensus 341 ~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v 420 (470)
T PLN03015 341 QWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLV 420 (470)
T ss_pred ecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999888899999952 112368999999999
Q ss_pred HHHHhC--hhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 035557 80 REILEG--ERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSI 124 (129)
Q Consensus 80 ~~~l~~--~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 124 (129)
+++|.+ ++|+++|+|++++++..++++++||||.+++++|++.++
T Consensus 421 ~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~~~ 467 (470)
T PLN03015 421 RKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKRCY 467 (470)
T ss_pred HHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhcc
Confidence 999963 578899999999999999999999999999999998864
No 15
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=2.6e-32 Score=211.53 Aligned_cols=122 Identities=23% Similarity=0.443 Sum_probs=109.8
Q ss_pred CCCChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHH
Q 035557 1 NWCPQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIR 80 (129)
Q Consensus 1 ~w~pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~ 80 (129)
.|+||.+||+|+++++|||||||||++|++++|||||++|++.||+.||+++++.||+|+.+...+++.+++++|.++|+
T Consensus 317 ~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~ 396 (442)
T PLN02208 317 GWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIK 396 (442)
T ss_pred ccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999988866999999754223489999999999
Q ss_pred HHHhCh--hhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhC
Q 035557 81 EILEGE--RCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSISS 126 (129)
Q Consensus 81 ~~l~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 126 (129)
++|+++ +|+++|++++++++.+.+ +|||..++++|++.+++.
T Consensus 397 ~~m~~~~e~g~~~r~~~~~~~~~~~~----~gsS~~~l~~~v~~l~~~ 440 (442)
T PLN02208 397 SVMDKDSDLGKLVRSNHTKLKEILVS----PGLLTGYVDKFVEELQEY 440 (442)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHh
Confidence 999764 478899999999999744 689999999999999764
No 16
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3e-32 Score=212.84 Aligned_cols=124 Identities=34% Similarity=0.581 Sum_probs=112.9
Q ss_pred CCCChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHH
Q 035557 1 NWCPQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIR 80 (129)
Q Consensus 1 ~w~pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~ 80 (129)
+|+||..+|+|+++++|||||||||++|++++|||||++|++.||+.||+++++.||+|+.+.....+..+.+++.++|+
T Consensus 349 ~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~ 428 (477)
T PLN02863 349 GWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFM 428 (477)
T ss_pred CCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999998877999999543223568999999999
Q ss_pred HHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhC
Q 035557 81 EILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSISS 126 (129)
Q Consensus 81 ~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 126 (129)
++|.+ +++||+|++++++.+++++.+||||..++++|++.+++.
T Consensus 429 ~~m~~--~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~ 472 (477)
T PLN02863 429 ESVSE--NQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVEL 472 (477)
T ss_pred HHhhc--cHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHh
Confidence 99942 249999999999999999999999999999999998764
No 17
>PLN02562 UDP-glycosyltransferase
Probab=99.97 E-value=7.5e-32 Score=209.37 Aligned_cols=115 Identities=33% Similarity=0.571 Sum_probs=107.2
Q ss_pred CCCChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHH
Q 035557 1 NWCPQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIR 80 (129)
Q Consensus 1 ~w~pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~ 80 (129)
+|+||.+||+|+++++||||||+||++|++++|||||++|++.||+.||+++++.||+|+.+. .++++++.++|+
T Consensus 334 ~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~-----~~~~~~l~~~v~ 408 (448)
T PLN02562 334 SWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRIS-----GFGQKEVEEGLR 408 (448)
T ss_pred ecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeC-----CCCHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999998779998883 578999999999
Q ss_pred HHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 035557 81 EILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSI 124 (129)
Q Consensus 81 ~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 124 (129)
++|.++ +||+|++++++.+.+. .+||||.+++++|+++++
T Consensus 409 ~~l~~~---~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 409 KVMEDS---GMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred HHhCCH---HHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 999887 9999999999998876 667999999999999874
No 18
>PLN02764 glycosyltransferase family protein
Probab=99.97 E-value=1.7e-31 Score=207.05 Aligned_cols=123 Identities=25% Similarity=0.502 Sum_probs=110.7
Q ss_pred CCCChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHH
Q 035557 1 NWCPQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIR 80 (129)
Q Consensus 1 ~w~pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~ 80 (129)
+|+||.+||+|+++++||||||+||++|++++|||||++|++.||+.||+++++.||+|+.+..++.+.+++++|.++|+
T Consensus 323 ~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~ 402 (453)
T PLN02764 323 GWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAIN 402 (453)
T ss_pred CCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999998766999987543112689999999999
Q ss_pred HHHhC--hhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhCC
Q 035557 81 EILEG--ERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSISSK 127 (129)
Q Consensus 81 ~~l~~--~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~~ 127 (129)
++|++ ++|+++|++++++++.+++ +|||..++++|++++.+..
T Consensus 403 ~vm~~~~~~g~~~r~~a~~~~~~~~~----~GSS~~~l~~lv~~~~~~~ 447 (453)
T PLN02764 403 SVMKRDSEIGNLVKKNHTKWRETLAS----PGLLTGYVDNFIESLQDLV 447 (453)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHhc
Confidence 99976 4578899999999999876 6999999999999998754
No 19
>PLN02670 transferase, transferring glycosyl groups
Probab=99.97 E-value=2e-31 Score=207.73 Aligned_cols=122 Identities=30% Similarity=0.628 Sum_probs=111.9
Q ss_pred CCCChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCC-CCCccHHHHHHHH
Q 035557 1 NWCPQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADD-KGIVRREAIAHCI 79 (129)
Q Consensus 1 ~w~pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~-~~~~~~~~l~~~i 79 (129)
+|+||.+||+|+++++|||||||||++|++++|||||++|++.||+.||+++++. |+|+.+...+ ++.++.++|.++|
T Consensus 345 ~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~-g~Gv~l~~~~~~~~~~~e~i~~av 423 (472)
T PLN02670 345 GWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGK-KLGLEVPRDERDGSFTSDSVAESV 423 (472)
T ss_pred CcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHc-CeeEEeeccccCCcCcHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999876 9999996432 2358999999999
Q ss_pred HHHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhCC
Q 035557 80 REILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSISSK 127 (129)
Q Consensus 80 ~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~~ 127 (129)
+++|.+++|++||+|++++++.+++. +...+.+++|++.++...
T Consensus 424 ~~vm~~~~g~~~r~~a~~l~~~~~~~----~~~~~~~~~~~~~l~~~~ 467 (472)
T PLN02670 424 RLAMVDDAGEEIRDKAKEMRNLFGDM----DRNNRYVDELVHYLRENR 467 (472)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHhCc----chhHHHHHHHHHHHHHhc
Confidence 99998877889999999999999986 888999999999998764
No 20
>PLN03004 UDP-glycosyltransferase
Probab=99.97 E-value=1.1e-31 Score=208.23 Aligned_cols=111 Identities=37% Similarity=0.644 Sum_probs=102.9
Q ss_pred CCCChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHH
Q 035557 1 NWCPQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIR 80 (129)
Q Consensus 1 ~w~pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~ 80 (129)
+|+||.+||+|+++++||||||+||++|++++|||||++|++.||+.||+++++.||+|+.+..++.+.+++++|.++|+
T Consensus 340 ~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~ 419 (451)
T PLN03004 340 SWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQ 419 (451)
T ss_pred eeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999877999999753223579999999999
Q ss_pred HHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHH
Q 035557 81 EILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDK 114 (129)
Q Consensus 81 ~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 114 (129)
++|.++ +||++++++++..+.++.+||||.+
T Consensus 420 ~vm~~~---~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 420 EIIGEC---PVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred HHhcCH---HHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 999876 9999999999999999999999864
No 21
>PLN00414 glycosyltransferase family protein
Probab=99.97 E-value=3.9e-30 Score=199.55 Aligned_cols=123 Identities=24% Similarity=0.444 Sum_probs=106.3
Q ss_pred CCCChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHH
Q 035557 1 NWCPQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIR 80 (129)
Q Consensus 1 ~w~pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~ 80 (129)
.|+||..||+|+++++|||||||||++|++++|||||++|++.||+.||+++++.||+|+.+..++++.+++++|.++++
T Consensus 318 ~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~ 397 (446)
T PLN00414 318 GWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVK 397 (446)
T ss_pred ccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999998767999999643223589999999999
Q ss_pred HHHhC--hhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhCC
Q 035557 81 EILEG--ERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSISSK 127 (129)
Q Consensus 81 ~~l~~--~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~~ 127 (129)
++|.+ ++|+++|++++++++.+. ++||++ ..+++|++++++..
T Consensus 398 ~~m~~~~e~g~~~r~~a~~~~~~~~---~~gg~s-s~l~~~v~~~~~~~ 442 (446)
T PLN00414 398 SVMDKDSEIGNLVKRNHKKLKETLV---SPGLLS-GYADKFVEALENEV 442 (446)
T ss_pred HHhcCChhhHHHHHHHHHHHHHHHH---cCCCcH-HHHHHHHHHHHHhc
Confidence 99976 346789999999999964 445534 44899999987654
No 22
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=99.96 E-value=3.3e-30 Score=201.89 Aligned_cols=114 Identities=31% Similarity=0.449 Sum_probs=85.8
Q ss_pred CCCChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHH
Q 035557 1 NWCPQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIR 80 (129)
Q Consensus 1 ~w~pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~ 80 (129)
+|+||.++|+|+++++||||||+||+.||+++|||+|++|+++||+.||.++++. |+|+.++.. .++.+++.++|+
T Consensus 329 ~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~-G~g~~l~~~---~~~~~~l~~ai~ 404 (500)
T PF00201_consen 329 KWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEK-GVGVVLDKN---DLTEEELRAAIR 404 (500)
T ss_dssp SS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHT-TSEEEEGGG---C-SHHHHHHHHH
T ss_pred ccccchhhhhcccceeeeeccccchhhhhhhccCCccCCCCcccCCccceEEEEE-eeEEEEEec---CCcHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999 999999877 899999999999
Q ss_pred HHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 035557 81 EILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSI 124 (129)
Q Consensus 81 ~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 124 (129)
++++|+ +|++||+++++++++.+ -+..+.+...++.+.
T Consensus 405 ~vl~~~---~y~~~a~~ls~~~~~~p---~~p~~~~~~~ie~v~ 442 (500)
T PF00201_consen 405 EVLENP---SYKENAKRLSSLFRDRP---ISPLERAVWWIEYVA 442 (500)
T ss_dssp HHHHSH---HHHHHHHHHHHTTT---------------------
T ss_pred HHHhhh---HHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHH
Confidence 999998 99999999999999863 233344444444443
No 23
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=99.95 E-value=1.1e-27 Score=188.59 Aligned_cols=117 Identities=25% Similarity=0.339 Sum_probs=103.4
Q ss_pred CCCChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHH
Q 035557 1 NWCPQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIR 80 (129)
Q Consensus 1 ~w~pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~ 80 (129)
+|+||.+||+|+++++||||||.||+.||+++|||+|++|++.||+.||+++++. |+|+.++.. .++.++|.++|+
T Consensus 352 ~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~-G~G~~l~~~---~~t~~~l~~ai~ 427 (507)
T PHA03392 352 KWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVEL-GIGRALDTV---TVSAAQLVLAIV 427 (507)
T ss_pred cCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHc-CcEEEeccC---CcCHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999 999999876 789999999999
Q ss_pred HHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhCC
Q 035557 81 EILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSISSK 127 (129)
Q Consensus 81 ~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~~ 127 (129)
++++++ +|++||+++++.+++. +-+..+.+...++.+.++.
T Consensus 428 ~vl~~~---~y~~~a~~ls~~~~~~---p~~~~~~av~~iE~v~r~~ 468 (507)
T PHA03392 428 DVIENP---KYRKNLKELRHLIRHQ---PMTPLHKAIWYTEHVIRNK 468 (507)
T ss_pred HHhCCH---HHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCC
Confidence 999998 9999999999999984 2234455555556555443
No 24
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.92 E-value=1.4e-24 Score=169.65 Aligned_cols=98 Identities=37% Similarity=0.616 Sum_probs=86.6
Q ss_pred CCCChHHh-hcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHH
Q 035557 1 NWCPQLEV-LAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCI 79 (129)
Q Consensus 1 ~w~pq~~i-L~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i 79 (129)
+|+||.++ |+|+++++||||||+||++|++++|||+|++|+++||+.||+++++.|++++.... +.+...+.+++
T Consensus 341 ~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~----~~~~~~~~~~~ 416 (496)
T KOG1192|consen 341 KWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKR----DLVSEELLEAI 416 (496)
T ss_pred cCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehh----hcCcHHHHHHH
Confidence 59999998 59999999999999999999999999999999999999999999999445544443 44544599999
Q ss_pred HHHHhChhhHHHHHHHHHHHHHHHHH
Q 035557 80 REILEGERCKEIRQNAGKWSNFAKEA 105 (129)
Q Consensus 80 ~~~l~~~~~~~~~~~a~~l~~~~~~~ 105 (129)
..+++++ +|+++++++++..++.
T Consensus 417 ~~il~~~---~y~~~~~~l~~~~~~~ 439 (496)
T KOG1192|consen 417 KEILENE---EYKEAAKRLSEILRDQ 439 (496)
T ss_pred HHHHcCh---HHHHHHHHHHHHHHcC
Confidence 9999988 9999999999998864
No 25
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.90 E-value=2.8e-23 Score=159.80 Aligned_cols=110 Identities=26% Similarity=0.450 Sum_probs=100.3
Q ss_pred CCCChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHH
Q 035557 1 NWCPQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIR 80 (129)
Q Consensus 1 ~w~pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~ 80 (129)
.|+||..+|.++++ ||||||+||++|++++|||+|++|...||+.||.++++. |+|+.+..+ .++.+.++++|+
T Consensus 290 ~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~-G~G~~l~~~---~l~~~~l~~av~ 363 (406)
T COG1819 290 DYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEEL-GAGIALPFE---ELTEERLRAAVN 363 (406)
T ss_pred cCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHc-CCceecCcc---cCCHHHHHHHHH
Confidence 59999999999999 999999999999999999999999999999999999999 999999887 899999999999
Q ss_pred HHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 035557 81 EILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSI 124 (129)
Q Consensus 81 ~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 124 (129)
++|.++ .|+++++++++.++.. ++ .+.+.+.++.+.
T Consensus 364 ~vL~~~---~~~~~~~~~~~~~~~~----~g-~~~~a~~le~~~ 399 (406)
T COG1819 364 EVLADD---SYRRAAERLAEEFKEE----DG-PAKAADLLEEFA 399 (406)
T ss_pred HHhcCH---HHHHHHHHHHHHhhhc----cc-HHHHHHHHHHHH
Confidence 999998 9999999999999985 33 555555555543
No 26
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.87 E-value=1.8e-21 Score=148.58 Aligned_cols=109 Identities=33% Similarity=0.528 Sum_probs=97.5
Q ss_pred CCCChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHH
Q 035557 1 NWCPQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIR 80 (129)
Q Consensus 1 ~w~pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~ 80 (129)
.|+||..+|.++++ +|||||++|++|++++|+|+|++|...||..|+.++++. |+|..+... .+++++|.++|+
T Consensus 281 ~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~-g~g~~l~~~---~~~~~~l~~ai~ 354 (392)
T TIGR01426 281 QWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAEL-GLGRHLPPE---EVTAEKLREAVL 354 (392)
T ss_pred CCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHC-CCEEEeccc---cCCHHHHHHHHH
Confidence 58999999999998 999999999999999999999999999999999999999 999998766 789999999999
Q ss_pred HHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 035557 81 EILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVAN 122 (129)
Q Consensus 81 ~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 122 (129)
+++.++ +|+++++++++.+... ++...+.+.+.+.
T Consensus 355 ~~l~~~---~~~~~~~~l~~~~~~~----~~~~~aa~~i~~~ 389 (392)
T TIGR01426 355 AVLSDP---RYAERLRKMRAEIREA----GGARRAADEIEGF 389 (392)
T ss_pred HHhcCH---HHHHHHHHHHHHHHHc----CCHHHHHHHHHHh
Confidence 999988 8999999999999874 5555555554443
No 27
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.85 E-value=4.5e-21 Score=146.38 Aligned_cols=94 Identities=23% Similarity=0.329 Sum_probs=84.5
Q ss_pred CCCChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHH
Q 035557 1 NWCPQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIR 80 (129)
Q Consensus 1 ~w~pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~ 80 (129)
+|+||..+|.++++ ||||||+||++|++++|+|+|++|+..||+.||+++++. |+|+.+... .++.++|.++++
T Consensus 294 ~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~-G~g~~l~~~---~~~~~~l~~al~ 367 (401)
T cd03784 294 DFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAEL-GAGPALDPR---ELTAERLAAALR 367 (401)
T ss_pred CCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHC-CCCCCCCcc---cCCHHHHHHHHH
Confidence 48999999999999 999999999999999999999999999999999999999 999999776 689999999999
Q ss_pred HHHhChhhHHHHHHHHHHHHHHHH
Q 035557 81 EILEGERCKEIRQNAGKWSNFAKE 104 (129)
Q Consensus 81 ~~l~~~~~~~~~~~a~~l~~~~~~ 104 (129)
+++.+ .+++++.++.+.+++
T Consensus 368 ~~l~~----~~~~~~~~~~~~~~~ 387 (401)
T cd03784 368 RLLDP----PSRRRAAALLRRIRE 387 (401)
T ss_pred HHhCH----HHHHHHHHHHHHHHh
Confidence 99985 455666666666654
No 28
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.56 E-value=1.6e-15 Score=103.54 Aligned_cols=80 Identities=23% Similarity=0.352 Sum_probs=67.6
Q ss_pred CCCC-hHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccc----cchhhHHHHHHHhcccceecCCCCCCccHHHH
Q 035557 1 NWCP-QLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWT----DQSTNSKCVMDVWKTGLKVPADDKGIVRREAI 75 (129)
Q Consensus 1 ~w~p-q~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~----dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l 75 (129)
+|+| ...++..+++ +|||||.+|++|++++|+|+|++|... +|..|+..+++. |+|..+... ..+.++|
T Consensus 61 ~~~~~m~~~m~~aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~~---~~~~~~L 134 (167)
T PF04101_consen 61 GFVDNMAELMAAADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDES---ELNPEEL 134 (167)
T ss_dssp CSSSSHHHHHHHHSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSECC---C-SCCCH
T ss_pred echhhHHHHHHHcCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCcc---cCCHHHH
Confidence 3677 7889999999 999999999999999999999999987 999999999999 999999876 6778899
Q ss_pred HHHHHHHHhCh
Q 035557 76 AHCIREILEGE 86 (129)
Q Consensus 76 ~~~i~~~l~~~ 86 (129)
.+.|.+++.++
T Consensus 135 ~~~i~~l~~~~ 145 (167)
T PF04101_consen 135 AEAIEELLSDP 145 (167)
T ss_dssp HHHHHCHCCCH
T ss_pred HHHHHHHHcCc
Confidence 99999998876
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.53 E-value=3.3e-14 Score=107.90 Aligned_cols=85 Identities=18% Similarity=0.213 Sum_probs=73.5
Q ss_pred hHHhhcccCCcceecCCChhhHHHHHHcCCCeeccccc-----ccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHH
Q 035557 5 QLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQW-----TDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCI 79 (129)
Q Consensus 5 q~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~-----~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i 79 (129)
-..+++++++ +|||+|++|+.|++++|+|+|++|+. .||..||+++++. |+|..+..+ +++++.+.+++
T Consensus 246 m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~-g~~~~l~~~---~~~~~~l~~~l 319 (352)
T PRK12446 246 LPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQ-GYASVLYEE---DVTVNSLIKHV 319 (352)
T ss_pred HHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHC-CCEEEcchh---cCCHHHHHHHH
Confidence 3578999999 99999999999999999999999984 4899999999999 999999876 88999999999
Q ss_pred HHHHhChhhHHHHHHHHH
Q 035557 80 REILEGERCKEIRQNAGK 97 (129)
Q Consensus 80 ~~~l~~~~~~~~~~~a~~ 97 (129)
.+++.|+ +.|++++++
T Consensus 320 ~~ll~~~--~~~~~~~~~ 335 (352)
T PRK12446 320 EELSHNN--EKYKTALKK 335 (352)
T ss_pred HHHHcCH--HHHHHHHHH
Confidence 9999775 245544433
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.46 E-value=4.9e-13 Score=101.63 Aligned_cols=75 Identities=23% Similarity=0.286 Sum_probs=69.6
Q ss_pred HHhhcccCCcceecCCChhhHHHHHHcCCCeeccccc----ccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHH
Q 035557 6 LEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQW----TDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIRE 81 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~----~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ 81 (129)
..+|..+|+ +||++|++|+.|.++.|+|+|.+|+. .||..||..+++. |.|..++.. +++++++.+.|.+
T Consensus 247 ~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-gaa~~i~~~---~lt~~~l~~~i~~ 320 (357)
T COG0707 247 AALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-GAALVIRQS---ELTPEKLAELILR 320 (357)
T ss_pred HHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-CCEEEeccc---cCCHHHHHHHHHH
Confidence 567899999 99999999999999999999999983 4788899999999 999999987 8999999999999
Q ss_pred HHhCh
Q 035557 82 ILEGE 86 (129)
Q Consensus 82 ~l~~~ 86 (129)
++.++
T Consensus 321 l~~~~ 325 (357)
T COG0707 321 LLSNP 325 (357)
T ss_pred HhcCH
Confidence 99875
No 31
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.41 E-value=2.8e-13 Score=100.51 Aligned_cols=72 Identities=19% Similarity=0.388 Sum_probs=66.4
Q ss_pred hHHhhcccCCcceecCCChhhHHHHHHcCCCeecccc--cccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHH
Q 035557 5 QLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQ--WTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREI 82 (129)
Q Consensus 5 q~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~--~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~ 82 (129)
-.++|..+++ +|+|||.+|++|++++|+|+|++|. ..||..||+.+.+. |+|..++.+ .++++.|.+.|+++
T Consensus 244 ~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~-G~~~~~~~~---~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 244 FAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEEL-GLGIVLSQE---DLTPERLAEFLERL 317 (318)
T ss_pred HHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHC-CCeEEcccc---cCCHHHHHHHHhcC
Confidence 3578899999 9999999999999999999999999 67999999999999 999999877 89999999988763
No 32
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.39 E-value=4.3e-13 Score=100.35 Aligned_cols=76 Identities=22% Similarity=0.356 Sum_probs=63.0
Q ss_pred CCC--hHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccc--cchhhHHHHHHHhcccceecCCCCCCccHHHHHH
Q 035557 2 WCP--QLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWT--DQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAH 77 (129)
Q Consensus 2 w~p--q~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~--dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~ 77 (129)
|.| ....|..+++ +|||+|++|++|++++|+|++++|... ||..||..+++. |+|+.++.. ++ ++.+
T Consensus 236 ~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~-g~~~~l~~~---~~---~~~~ 306 (321)
T TIGR00661 236 ITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDL-GCGIALEYK---EL---RLLE 306 (321)
T ss_pred CChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHC-CCEEEcChh---hH---HHHH
Confidence 666 4677888999 999999999999999999999999955 899999999999 999998765 33 5555
Q ss_pred HHHHHHhCh
Q 035557 78 CIREILEGE 86 (129)
Q Consensus 78 ~i~~~l~~~ 86 (129)
++..+++++
T Consensus 307 ~~~~~~~~~ 315 (321)
T TIGR00661 307 AILDIRNMK 315 (321)
T ss_pred HHHhccccc
Confidence 666666554
No 33
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.37 E-value=3.9e-12 Score=95.88 Aligned_cols=107 Identities=17% Similarity=0.223 Sum_probs=85.6
Q ss_pred hHHhhcccCCcceecCCChhhHHHHHHcCCCeecccc----cccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHH
Q 035557 5 QLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQ----WTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIR 80 (129)
Q Consensus 5 q~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~----~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~ 80 (129)
..++|+.+++ +|+|+|.++++|++++|+|+|++|. .++|..|+..+.+. |.|..+..+ +++++.+.+++.
T Consensus 246 ~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~-~~g~~~~~~---~~~~~~l~~~i~ 319 (357)
T PRK00726 246 MAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDA-GAALLIPQS---DLTPEKLAEKLL 319 (357)
T ss_pred HHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHC-CCEEEEEcc---cCCHHHHHHHHH
Confidence 3678899999 9999999999999999999999997 36788999999999 999999766 678999999999
Q ss_pred HHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 035557 81 EILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSI 124 (129)
Q Consensus 81 ~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 124 (129)
++++++ ++++.+.+-..... +..+....+..+++.++
T Consensus 320 ~ll~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 320 ELLSDP---ERLEAMAEAARALG----KPDAAERLADLIEELAR 356 (357)
T ss_pred HHHcCH---HHHHHHHHHHHhcC----CcCHHHHHHHHHHHHhh
Confidence 999987 66655555443332 23566666666665543
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.08 E-value=7.3e-10 Score=82.87 Aligned_cols=83 Identities=19% Similarity=0.256 Sum_probs=69.7
Q ss_pred hHHhhcccCCcceecCCChhhHHHHHHcCCCeeccccc---ccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHH
Q 035557 5 QLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQW---TDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIRE 81 (129)
Q Consensus 5 q~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~---~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ 81 (129)
-..+|+.+++ +|+++|.++++|++++|+|+|++|.. .+|..|+..+.+. +.|..++.. +.+++++.+++++
T Consensus 244 ~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~-~~G~~~~~~---~~~~~~l~~~i~~ 317 (348)
T TIGR01133 244 MAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDL-GAGLVIRQK---ELLPEKLLEALLK 317 (348)
T ss_pred HHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHC-CCEEEEecc---cCCHHHHHHHHHH
Confidence 4678899999 99999988999999999999999863 4677899999998 999988765 5679999999999
Q ss_pred HHhChhhHHHHHHHH
Q 035557 82 ILEGERCKEIRQNAG 96 (129)
Q Consensus 82 ~l~~~~~~~~~~~a~ 96 (129)
++.++ ++++++.
T Consensus 318 ll~~~---~~~~~~~ 329 (348)
T TIGR01133 318 LLLDP---ANLEAMA 329 (348)
T ss_pred HHcCH---HHHHHHH
Confidence 99887 4444333
No 35
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.06 E-value=1e-09 Score=82.08 Aligned_cols=76 Identities=18% Similarity=0.363 Sum_probs=66.9
Q ss_pred hHHhhcccCCcceecCCChhhHHHHHHcCCCeecccc----cccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHH
Q 035557 5 QLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQ----WTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIR 80 (129)
Q Consensus 5 q~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~----~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~ 80 (129)
...+|+.+++ +|+++|.++++|++++|+|+|++|. ..+|..|+..+.+. |.|..++.. ..+.+++.++++
T Consensus 246 ~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~-g~g~~v~~~---~~~~~~l~~~i~ 319 (350)
T cd03785 246 MAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKA-GAAVLIPQE---ELTPERLAAALL 319 (350)
T ss_pred HHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhC-CCEEEEecC---CCCHHHHHHHHH
Confidence 3567899999 9999999999999999999999986 35788899999999 999999754 468999999999
Q ss_pred HHHhCh
Q 035557 81 EILEGE 86 (129)
Q Consensus 81 ~~l~~~ 86 (129)
+++.++
T Consensus 320 ~ll~~~ 325 (350)
T cd03785 320 ELLSDP 325 (350)
T ss_pred HHhcCH
Confidence 999876
No 36
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.01 E-value=3.8e-09 Score=81.12 Aligned_cols=102 Identities=15% Similarity=0.091 Sum_probs=74.8
Q ss_pred HHhhcccCCcceecCCChhhHHHHHHcCCCeecc-cccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHh
Q 035557 6 LEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAM-PQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILE 84 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~-P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~ 84 (129)
..+++.+++ +|+.+|..|+.|++++|+|+|+. |..+++..|+..+.+. |+|.... +.+++.++|.++++
T Consensus 268 ~~~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~-------~~~~l~~~i~~ll~ 337 (391)
T PRK13608 268 NEWMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD-------TPEEAIKIVASLTN 337 (391)
T ss_pred HHHHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC-------CHHHHHHHHHHHhc
Confidence 467899999 99999999999999999999998 7766777899999999 9997652 67889999999998
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 035557 85 GERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSI 124 (129)
Q Consensus 85 ~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 124 (129)
++ +.++++. +..++. ..+.+....++.+++.+.
T Consensus 338 ~~---~~~~~m~---~~~~~~-~~~~s~~~i~~~l~~l~~ 370 (391)
T PRK13608 338 GN---EQLTNMI---STMEQD-KIKYATQTICRDLLDLIG 370 (391)
T ss_pred CH---HHHHHHH---HHHHHh-cCCCCHHHHHHHHHHHhh
Confidence 76 3332222 222222 112455555555555443
No 37
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=98.92 E-value=1.3e-08 Score=77.82 Aligned_cols=101 Identities=16% Similarity=0.080 Sum_probs=73.9
Q ss_pred HHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccch-hhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHh
Q 035557 6 LEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQS-TNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILE 84 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~-~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~ 84 (129)
..+++.+|+ +|+.+|.+|++||+++|+|+|+.+....|. .|+..+.+. |.|..+ .+++++.++|.+++.
T Consensus 277 ~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~-------~~~~~la~~i~~ll~ 346 (382)
T PLN02605 277 EEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS-------ESPKEIARIVAEWFG 346 (382)
T ss_pred HHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec-------CCHHHHHHHHHHHHc
Confidence 678899999 999999999999999999999997655665 699999988 998754 277899999999998
Q ss_pred C-hhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 035557 85 G-ERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANS 123 (129)
Q Consensus 85 ~-~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 123 (129)
+ + +.++++.+-...... +.++...++.+.+.+
T Consensus 347 ~~~---~~~~~m~~~~~~~~~----~~a~~~i~~~l~~~~ 379 (382)
T PLN02605 347 DKS---DELEAMSENALKLAR----PEAVFDIVHDLHELV 379 (382)
T ss_pred CCH---HHHHHHHHHHHHhcC----CchHHHHHHHHHHHh
Confidence 7 5 434333333222222 245555555555443
No 38
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=98.88 E-value=1.4e-08 Score=78.05 Aligned_cols=104 Identities=14% Similarity=0.079 Sum_probs=80.6
Q ss_pred HHhhcccCCcceecCCChhhHHHHHHcCCCeecc----cccc---------cchhhHHHHHHHhcccceecCCCCCCccH
Q 035557 6 LEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAM----PQWT---------DQSTNSKCVMDVWKTGLKVPADDKGIVRR 72 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~----P~~~---------dq~~na~~~~~~~g~g~~~~~~~~~~~~~ 72 (129)
..+++.+|+ +|+.+|..|+ |++++|+|+|++ |+.. .|..|+..+.+. ++...+.++ ++++
T Consensus 262 ~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~-~~~pel~q~---~~~~ 334 (385)
T TIGR00215 262 RKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANR-LLVPELLQE---ECTP 334 (385)
T ss_pred HHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCC-ccchhhcCC---CCCH
Confidence 457899999 9999999988 999999999999 8732 377799999999 888888776 8999
Q ss_pred HHHHHHHHHHHhCh----hh-HHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 035557 73 EAIAHCIREILEGE----RC-KEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFV 120 (129)
Q Consensus 73 ~~l~~~i~~~l~~~----~~-~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 120 (129)
+.|.+.+.+++.|+ +. +++++...++++.+ .++|.+.+....++
T Consensus 335 ~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~a~~i~ 383 (385)
T TIGR00215 335 HPLAIALLLLLENGLKAYKEMHRERQFFEELRQRI----YCNADSERAAQAVL 383 (385)
T ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHh
Confidence 99999999999875 32 44555555555444 44566666665554
No 39
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=98.86 E-value=2.3e-08 Score=76.13 Aligned_cols=105 Identities=16% Similarity=0.178 Sum_probs=75.0
Q ss_pred CCCh-HHhhcccCCcceecCCChhhHHHHHHcCCCeecc-cccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHH
Q 035557 2 WCPQ-LEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAM-PQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCI 79 (129)
Q Consensus 2 w~pq-~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~-P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i 79 (129)
|+++ ..+++.+++ +|+.+|..|+.|++++|+|+|+. |..+.+..|+..+.+. |++... .+.+++.+++
T Consensus 263 ~~~~~~~l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~-------~~~~~l~~~i 332 (380)
T PRK13609 263 YVENIDELFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVI-------RDDEEVFAKT 332 (380)
T ss_pred chhhHHHHHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEE-------CCHHHHHHHH
Confidence 4444 578999999 99999999999999999999985 6667778899999888 888654 2568999999
Q ss_pred HHHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 035557 80 REILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANS 123 (129)
Q Consensus 80 ~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 123 (129)
.++++++ +.++++.+-...+ ..+.+....++.+++.+
T Consensus 333 ~~ll~~~---~~~~~m~~~~~~~----~~~~s~~~i~~~i~~~~ 369 (380)
T PRK13609 333 EALLQDD---MKLLQMKEAMKSL----YLPEPADHIVDDILAEN 369 (380)
T ss_pred HHHHCCH---HHHHHHHHHHHHh----CCCchHHHHHHHHHHhh
Confidence 9999887 4444333322221 12245555555555444
No 40
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.82 E-value=4.3e-08 Score=75.67 Aligned_cols=101 Identities=17% Similarity=0.228 Sum_probs=69.5
Q ss_pred HHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHH---hcccceecCCCCCCccHHHHHHHHHHH
Q 035557 6 LEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDV---WKTGLKVPADDKGIVRREAIAHCIREI 82 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~---~g~g~~~~~~~~~~~~~~~l~~~i~~~ 82 (129)
..+++.+++ +|+.+|..| .|++..|+|+|++|....|. |+..+++. .|.+..+.. .+.+.+.+.+.++
T Consensus 291 ~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g~~~~l~~-----~~~~~l~~~l~~l 361 (396)
T TIGR03492 291 AEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLGGSVFLAS-----KNPEQAAQVVRQL 361 (396)
T ss_pred HHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcCCEEecCC-----CCHHHHHHHHHHH
Confidence 567899999 999999877 99999999999999877776 98776652 155555543 3558999999999
Q ss_pred HhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 035557 83 LEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVA 121 (129)
Q Consensus 83 l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 121 (129)
+.|+ +.++++.+ ..+....+++.+.+.++.+.+
T Consensus 362 l~d~---~~~~~~~~---~~~~~lg~~~a~~~ia~~i~~ 394 (396)
T TIGR03492 362 LADP---ELLERCRR---NGQERMGPPGASARIAESILK 394 (396)
T ss_pred HcCH---HHHHHHHH---HHHHhcCCCCHHHHHHHHHHH
Confidence 9887 54444442 222222334555555444433
No 41
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.70 E-value=9.8e-08 Score=72.46 Aligned_cols=107 Identities=15% Similarity=0.091 Sum_probs=66.5
Q ss_pred HHhhcccCCcceecCCChhhHHHHHHcCCCeecccccc--------cchhh-H----HHHHHHhcccceecCCCCCCccH
Q 035557 6 LEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWT--------DQSTN-S----KCVMDVWKTGLKVPADDKGIVRR 72 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~--------dq~~n-a----~~~~~~~g~g~~~~~~~~~~~~~ 72 (129)
..+++.+++ +|+.+|.+++ |++++|+|+|+.|-.. +|..| + ..+.+. +++..+... ..++
T Consensus 256 ~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~---~~~~ 328 (380)
T PRK00025 256 REAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGR-ELVPELLQE---EATP 328 (380)
T ss_pred HHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCC-CcchhhcCC---CCCH
Confidence 567899999 9999998887 9999999999995421 12222 2 222222 333334333 6789
Q ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 035557 73 EAIAHCIREILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANS 123 (129)
Q Consensus 73 ~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 123 (129)
+++.+.+.++++|+ +.++.+.+-.+.+.... ..+.+.+.++.+.+.+
T Consensus 329 ~~l~~~i~~ll~~~---~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~ 375 (380)
T PRK00025 329 EKLARALLPLLADG---ARRQALLEGFTELHQQL-RCGADERAAQAVLELL 375 (380)
T ss_pred HHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHh
Confidence 99999999999987 44444333222222222 2355555555555544
No 42
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=98.57 E-value=9e-08 Score=72.14 Aligned_cols=73 Identities=16% Similarity=0.253 Sum_probs=66.6
Q ss_pred HHhhcccCCcceecCCChhhHHHHHHcCCCeeccccc---ccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHH
Q 035557 6 LEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQW---TDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREI 82 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~---~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~ 82 (129)
..+|..++. +|+-||+||++|.+++|+|.+++|.. -||..-|.+++++ |+.-++..+ ++++..+.+++...
T Consensus 289 ~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~L-GL~dvL~pe---~lt~~~La~al~~~ 362 (400)
T COG4671 289 ESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEEL-GLVDVLLPE---NLTPQNLADALKAA 362 (400)
T ss_pred HHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhc-CcceeeCcc---cCChHHHHHHHHhc
Confidence 456778888 99999999999999999999999984 3899999999999 999999888 89999999999988
Q ss_pred Hh
Q 035557 83 LE 84 (129)
Q Consensus 83 l~ 84 (129)
++
T Consensus 363 l~ 364 (400)
T COG4671 363 LA 364 (400)
T ss_pred cc
Confidence 87
No 43
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.41 E-value=1.5e-07 Score=69.50 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=42.2
Q ss_pred CCCh-HHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHH
Q 035557 2 WCPQ-LEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKC 51 (129)
Q Consensus 2 w~pq-~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~ 51 (129)
++++ ..+|..+++ +|++|| +|++|+++.|+|+|++|+..+|..||+.
T Consensus 231 ~~~~m~~lm~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 231 DVENMAELMNEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred CHHHHHHHHHHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 3454 578999999 999999 9999999999999999999999999875
No 44
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.35 E-value=5.4e-07 Score=60.50 Aligned_cols=65 Identities=17% Similarity=0.240 Sum_probs=49.5
Q ss_pred HHhhcccCCcceecCCChhhHHHHHHcCCCeecccc----cccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHH
Q 035557 6 LEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQ----WTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIRE 81 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~----~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ 81 (129)
.+.++.+++ +|+|+|+||++|.+..|+|.|+++- ..+|..-|..+++. |... ..++.++-+.+++
T Consensus 75 ~e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e---gyL~------~C~ps~L~~~L~~ 143 (170)
T KOG3349|consen 75 TEDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE---GYLY------YCTPSTLPAGLAK 143 (170)
T ss_pred HHHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc---CcEE------EeeccchHHHHHh
Confidence 556677899 9999999999999999999999984 45788888888877 5555 3344445544443
No 45
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.27 E-value=1.8e-06 Score=65.77 Aligned_cols=88 Identities=13% Similarity=0.131 Sum_probs=63.3
Q ss_pred HHhhcccCCcceecCCChhhHHHHHHcCCCeecccc--cccchhhHHHHH---HHhcccceecC----C------CCCCc
Q 035557 6 LEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQ--WTDQSTNSKCVM---DVWKTGLKVPA----D------DKGIV 70 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~--~~dq~~na~~~~---~~~g~g~~~~~----~------~~~~~ 70 (129)
.+++..+++ +|+.+|..|+ |++..|+|+|+ |+ ..-|..||+++. .. |+...+-. . -.++.
T Consensus 230 ~~~m~~aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~i-gL~Nii~~~~~~~~vvPEllQ~~~ 304 (347)
T PRK14089 230 HKALLEAEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHI-GLANIFFDFLGKEPLHPELLQEFV 304 (347)
T ss_pred HHHHHhhhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCee-ehHHHhcCCCcccccCchhhcccC
Confidence 467889999 9999999999 99999999998 55 346788999998 45 66655521 0 01278
Q ss_pred cHHHHHHHHHHHHhChhhHHHHHHHHHHHHHH
Q 035557 71 RREAIAHCIREILEGERCKEIRQNAGKWSNFA 102 (129)
Q Consensus 71 ~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~ 102 (129)
+++.|.+.+.+. .. +++++...++++.+
T Consensus 305 t~~~la~~i~~~-~~---~~~~~~~~~l~~~l 332 (347)
T PRK14089 305 TVENLLKAYKEM-DR---EKFFKKSKELREYL 332 (347)
T ss_pred CHHHHHHHHHHH-HH---HHHHHHHHHHHHHh
Confidence 999999988772 11 25555555555554
No 46
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.25 E-value=1.6e-05 Score=58.63 Aligned_cols=102 Identities=22% Similarity=0.232 Sum_probs=67.7
Q ss_pred CCChH---HhhcccCCcceecCCC----hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHH
Q 035557 2 WCPQL---EVLAHEATGCFLTHCG----WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREA 74 (129)
Q Consensus 2 w~pq~---~iL~~~~~~~~I~hgG----~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~ 74 (129)
|+|+. .+++.+++ +|..+. .++++|++++|+|+|+.|..+ +...+.+. +.|..+.. .+.++
T Consensus 254 ~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~-~~g~~~~~-----~~~~~ 321 (364)
T cd03814 254 FLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTDG-ENGLLVEP-----GDAEA 321 (364)
T ss_pred ccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcCC-cceEEcCC-----CCHHH
Confidence 45654 47899998 776654 478999999999999887543 45566666 78887754 36788
Q ss_pred HHHHHHHHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 035557 75 IAHCIREILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVAN 122 (129)
Q Consensus 75 l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 122 (129)
+.+++.+++.++ +.++++.+-+..... .-+.....+.+++.
T Consensus 322 l~~~i~~l~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 362 (364)
T cd03814 322 FAAALAALLADP---ELRRRMAARARAEAE----RRSWEAFLDNLLEA 362 (364)
T ss_pred HHHHHHHHHcCH---HHHHHHHHHHHHHHh----hcCHHHHHHHHHHh
Confidence 999999999887 444333332222222 14555555555543
No 47
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.01 E-value=1.5e-05 Score=60.38 Aligned_cols=95 Identities=22% Similarity=0.323 Sum_probs=62.9
Q ss_pred HHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhC
Q 035557 6 LEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEG 85 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 85 (129)
..+++++++ +|+-+|.. +.||+++|+|+|.++-.++++. +.+. |.+..+. .++++|.+++.+++++
T Consensus 269 ~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~------~d~~~i~~ai~~ll~~ 334 (365)
T TIGR00236 269 LNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG------TDKENITKAAKRLLTD 334 (365)
T ss_pred HHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC------CCHHHHHHHHHHHHhC
Confidence 356788888 99877654 7999999999999975554442 3345 6666652 3788999999999988
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 035557 86 ERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVA 121 (129)
Q Consensus 86 ~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 121 (129)
+ +.++++.+-...+ .+++++.+.++.+.+
T Consensus 335 ~---~~~~~~~~~~~~~----g~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 335 P---DEYKKMSNASNPY----GDGEASERIVEELLN 363 (365)
T ss_pred h---HHHHHhhhcCCCC----cCchHHHHHHHHHHh
Confidence 6 5555544322221 334555555554443
No 48
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=97.91 E-value=0.00019 Score=55.55 Aligned_cols=71 Identities=15% Similarity=0.251 Sum_probs=52.1
Q ss_pred HHhhcccCCcceec-----CCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHH
Q 035557 6 LEVLAHEATGCFLT-----HCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIR 80 (129)
Q Consensus 6 ~~iL~~~~~~~~I~-----hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~ 80 (129)
..+++.+++ ++. -+|..+++|++++|+|+|+-|...++......+.+. |.+... . +.+++.+++.
T Consensus 314 ~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~--~-----d~~~La~~l~ 383 (425)
T PRK05749 314 GLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQV--E-----DAEDLAKAVT 383 (425)
T ss_pred HHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEE--C-----CHHHHHHHHH
Confidence 455678887 443 245557999999999999999877766666666555 554432 2 6789999999
Q ss_pred HHHhCh
Q 035557 81 EILEGE 86 (129)
Q Consensus 81 ~~l~~~ 86 (129)
++++|+
T Consensus 384 ~ll~~~ 389 (425)
T PRK05749 384 YLLTDP 389 (425)
T ss_pred HHhcCH
Confidence 999887
No 49
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=97.77 E-value=0.00044 Score=50.28 Aligned_cols=69 Identities=29% Similarity=0.319 Sum_probs=52.0
Q ss_pred HHhhcccCCcceec----CCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHH
Q 035557 6 LEVLAHEATGCFLT----HCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIRE 81 (129)
Q Consensus 6 ~~iL~~~~~~~~I~----hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ 81 (129)
..++..+++ +|. -+..++++||+++|+|+|+.+. ......+.+. +.|..++.. +.+++.+++.+
T Consensus 270 ~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~~~-----~~~~l~~~i~~ 337 (374)
T cd03801 270 PALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVPPG-----DPEALAEAILR 337 (374)
T ss_pred HHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeCCC-----CHHHHHHHHHH
Confidence 456788888 663 2446799999999999998765 3345555556 778777543 68999999999
Q ss_pred HHhCh
Q 035557 82 ILEGE 86 (129)
Q Consensus 82 ~l~~~ 86 (129)
++.++
T Consensus 338 ~~~~~ 342 (374)
T cd03801 338 LLDDP 342 (374)
T ss_pred HHcCh
Confidence 99887
No 50
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.77 E-value=0.00056 Score=52.37 Aligned_cols=70 Identities=16% Similarity=0.173 Sum_probs=49.8
Q ss_pred HHhhcccCCcceecCC----C-hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHH
Q 035557 6 LEVLAHEATGCFLTHC----G-WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIR 80 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hg----G-~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~ 80 (129)
..+++.+++ +|... | ..+++||+++|+|+|+.... -+...+.+. ..|..+.. ..+.+++.++|.
T Consensus 271 ~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~~-~~G~~l~~----~~d~~~la~~I~ 339 (380)
T PRK15484 271 HNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLEG-ITGYHLAE----PMTSDSIISDIN 339 (380)
T ss_pred HHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcccC-CceEEEeC----CCCHHHHHHHHH
Confidence 345888998 66533 3 26789999999999997642 234445555 56764432 347899999999
Q ss_pred HHHhCh
Q 035557 81 EILEGE 86 (129)
Q Consensus 81 ~~l~~~ 86 (129)
+++.++
T Consensus 340 ~ll~d~ 345 (380)
T PRK15484 340 RTLADP 345 (380)
T ss_pred HHHcCH
Confidence 999887
No 51
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.76 E-value=0.00031 Score=52.55 Aligned_cols=69 Identities=29% Similarity=0.307 Sum_probs=52.2
Q ss_pred HHhhcccCCcceecC----------CChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHH
Q 035557 6 LEVLAHEATGCFLTH----------CGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAI 75 (129)
Q Consensus 6 ~~iL~~~~~~~~I~h----------gG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l 75 (129)
..+++.+++ +|.. |-.++++||+++|+|+|+-+.. .+...+.+. +.|..++. .+.+++
T Consensus 259 ~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g~~~~~-----~d~~~l 326 (367)
T cd05844 259 RELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETGLLVPE-----GDVAAL 326 (367)
T ss_pred HHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-CeeEEECC-----CCHHHH
Confidence 345788888 5532 2357999999999999987653 356666666 78888864 377999
Q ss_pred HHHHHHHHhCh
Q 035557 76 AHCIREILEGE 86 (129)
Q Consensus 76 ~~~i~~~l~~~ 86 (129)
.+++.+++.++
T Consensus 327 ~~~i~~l~~~~ 337 (367)
T cd05844 327 AAALGRLLADP 337 (367)
T ss_pred HHHHHHHHcCH
Confidence 99999999887
No 52
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.75 E-value=0.00013 Score=49.26 Aligned_cols=69 Identities=22% Similarity=0.239 Sum_probs=51.2
Q ss_pred HHhhcccCCcceecC----CChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHH
Q 035557 6 LEVLAHEATGCFLTH----CGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIRE 81 (129)
Q Consensus 6 ~~iL~~~~~~~~I~h----gG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ 81 (129)
..++..+++ +|+. +...++.||+++|+|+|+.. ...+...+.+. ..|..++. .+.+++.++|.+
T Consensus 87 ~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~~~~-~~g~~~~~-----~~~~~l~~~i~~ 154 (172)
T PF00534_consen 87 DELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEIINDG-VNGFLFDP-----NDIEELADAIEK 154 (172)
T ss_dssp HHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHSGTT-TSEEEEST-----TSHHHHHHHHHH
T ss_pred cccccccee--ccccccccccccccccccccccceeecc----ccCCceeeccc-cceEEeCC-----CCHHHHHHHHHH
Confidence 456788888 6665 55679999999999999753 44455666666 67888864 389999999999
Q ss_pred HHhCh
Q 035557 82 ILEGE 86 (129)
Q Consensus 82 ~l~~~ 86 (129)
++.++
T Consensus 155 ~l~~~ 159 (172)
T PF00534_consen 155 LLNDP 159 (172)
T ss_dssp HHHHH
T ss_pred HHCCH
Confidence 99886
No 53
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=97.73 E-value=0.00073 Score=49.60 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=50.8
Q ss_pred HhhcccCCcceecC----CC-hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHH
Q 035557 7 EVLAHEATGCFLTH----CG-WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIRE 81 (129)
Q Consensus 7 ~iL~~~~~~~~I~h----gG-~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ 81 (129)
.+++.+++ +|.. .| ..+++|++++|+|+|+.+. ......+.+. +.|..+... +.+++.+++.+
T Consensus 258 ~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~~-----d~~~l~~~i~~ 325 (359)
T cd03823 258 DFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDG-VNGLLFPPG-----DAEDLAAALER 325 (359)
T ss_pred HHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCC-CcEEEECCC-----CHHHHHHHHHH
Confidence 45788888 6632 23 4589999999999998764 3355566665 678888654 68999999999
Q ss_pred HHhCh
Q 035557 82 ILEGE 86 (129)
Q Consensus 82 ~l~~~ 86 (129)
+++++
T Consensus 326 l~~~~ 330 (359)
T cd03823 326 LIDDP 330 (359)
T ss_pred HHhCh
Confidence 99876
No 54
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=97.73 E-value=0.00039 Score=50.45 Aligned_cols=76 Identities=26% Similarity=0.388 Sum_probs=53.1
Q ss_pred HHhhcccCCcceecCCC----hhhHHHHHHcCCCeecccccccchhhHHHHHHHhc-ccceecCCCCCCccHHHHHHHHH
Q 035557 6 LEVLAHEATGCFLTHCG----WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWK-TGLKVPADDKGIVRREAIAHCIR 80 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hgG----~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g-~g~~~~~~~~~~~~~~~l~~~i~ 80 (129)
..++..+++ +|.-.. .++++|++++|+|+|+.+....+ ..+... + .|..++. .+.+++.+++.
T Consensus 247 ~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~-~~~g~~~~~-----~~~~~~~~~i~ 314 (348)
T cd03820 247 EEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIED-GVNGLLVPN-----GDVEALAEALL 314 (348)
T ss_pred HHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhhcc-CcceEEeCC-----CCHHHHHHHHH
Confidence 456788888 665542 47899999999999987643322 233344 4 7877754 36799999999
Q ss_pred HHHhChhhHHHHHHHH
Q 035557 81 EILEGERCKEIRQNAG 96 (129)
Q Consensus 81 ~~l~~~~~~~~~~~a~ 96 (129)
++++++ +.++++.
T Consensus 315 ~ll~~~---~~~~~~~ 327 (348)
T cd03820 315 RLMEDE---ELRKRMG 327 (348)
T ss_pred HHHcCH---HHHHHHH
Confidence 999887 4444443
No 55
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.73 E-value=0.00032 Score=51.96 Aligned_cols=86 Identities=24% Similarity=0.207 Sum_probs=56.6
Q ss_pred CCChH---HhhcccCCcceecC---CC-hhhHHHHHHcCCCeecccccccchhhHHHHHH-HhcccceecCCCCCCccHH
Q 035557 2 WCPQL---EVLAHEATGCFLTH---CG-WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMD-VWKTGLKVPADDKGIVRRE 73 (129)
Q Consensus 2 w~pq~---~iL~~~~~~~~I~h---gG-~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~-~~g~g~~~~~~~~~~~~~~ 73 (129)
|+|+. .+++.+++.++.++ -| ..++.||+++|+|+|+.+..+.. ..+.+ . +.|..++. -+.+
T Consensus 251 ~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~----~~i~~~~-~~g~~~~~-----~d~~ 320 (357)
T cd03795 251 RLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGG----SYVNLHG-VTGLVVPP-----GDPA 320 (357)
T ss_pred CCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCch----hHHhhCC-CceEEeCC-----CCHH
Confidence 66753 57788888333332 23 45799999999999987543332 33333 5 67877754 3789
Q ss_pred HHHHHHHHHHhChhh-HHHHHHHHH
Q 035557 74 AIAHCIREILEGERC-KEIRQNAGK 97 (129)
Q Consensus 74 ~l~~~i~~~l~~~~~-~~~~~~a~~ 97 (129)
++.++|.+++++++. +++++++++
T Consensus 321 ~~~~~i~~l~~~~~~~~~~~~~~~~ 345 (357)
T cd03795 321 ALAEAIRRLLEDPELRERLGEAARE 345 (357)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 999999999988722 334444443
No 56
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=97.68 E-value=0.00068 Score=51.07 Aligned_cols=73 Identities=25% Similarity=0.292 Sum_probs=54.3
Q ss_pred CCChHH---hhcccCCcceecCCC----hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHH
Q 035557 2 WCPQLE---VLAHEATGCFLTHCG----WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREA 74 (129)
Q Consensus 2 w~pq~~---iL~~~~~~~~I~hgG----~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~ 74 (129)
|+|+.+ ++..+++ ++..+- ..+++||+++|+|+|+-+.. .....+.+. +.|..++.. +.++
T Consensus 290 ~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~~-~~g~~~~~~-----~~~~ 357 (398)
T cd03800 290 RVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVDG-VTGLLVDPR-----DPEA 357 (398)
T ss_pred cCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccCC-CCeEEeCCC-----CHHH
Confidence 566644 4788888 664422 36899999999999987643 355566666 788888643 6899
Q ss_pred HHHHHHHHHhCh
Q 035557 75 IAHCIREILEGE 86 (129)
Q Consensus 75 l~~~i~~~l~~~ 86 (129)
+.++|.+++.++
T Consensus 358 l~~~i~~l~~~~ 369 (398)
T cd03800 358 LAAALRRLLTDP 369 (398)
T ss_pred HHHHHHHHHhCH
Confidence 999999999876
No 57
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=97.62 E-value=0.00085 Score=49.53 Aligned_cols=72 Identities=25% Similarity=0.373 Sum_probs=51.8
Q ss_pred CCCh---HHhhcccCCcceec--C----CChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccH
Q 035557 2 WCPQ---LEVLAHEATGCFLT--H----CGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRR 72 (129)
Q Consensus 2 w~pq---~~iL~~~~~~~~I~--h----gG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~ 72 (129)
|+|+ ..++..+++ +|. + +-.++++||+++|+|+|+.+..+ ...+.+. +.|..+... +.
T Consensus 255 ~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~~~-----d~ 321 (366)
T cd03822 255 YLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVPPG-----DP 321 (366)
T ss_pred cCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEcCC-----CH
Confidence 4564 456788888 552 2 33468999999999999987543 2334455 678777543 68
Q ss_pred HHHHHHHHHHHhCh
Q 035557 73 EAIAHCIREILEGE 86 (129)
Q Consensus 73 ~~l~~~i~~~l~~~ 86 (129)
+++.+++.++++++
T Consensus 322 ~~~~~~l~~l~~~~ 335 (366)
T cd03822 322 AALAEAIRRLLADP 335 (366)
T ss_pred HHHHHHHHHHHcCh
Confidence 99999999999885
No 58
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=97.61 E-value=0.0013 Score=47.99 Aligned_cols=73 Identities=26% Similarity=0.257 Sum_probs=53.1
Q ss_pred CCCh---HHhhcccCCcceec----CCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHH
Q 035557 2 WCPQ---LEVLAHEATGCFLT----HCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREA 74 (129)
Q Consensus 2 w~pq---~~iL~~~~~~~~I~----hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~ 74 (129)
|+|+ ..++..+++ +|. -+..++++|++++|+|+|+-+.. .....+.+. +.|..++. .+.++
T Consensus 266 ~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~~-~~g~~~~~-----~~~~~ 333 (377)
T cd03798 266 AVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITDG-ENGLLVPP-----GDPEA 333 (377)
T ss_pred CCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcCC-cceeEECC-----CCHHH
Confidence 4554 356788888 552 24467899999999999986542 344556665 66777754 47899
Q ss_pred HHHHHHHHHhCh
Q 035557 75 IAHCIREILEGE 86 (129)
Q Consensus 75 l~~~i~~~l~~~ 86 (129)
+.+++.+++++.
T Consensus 334 l~~~i~~~~~~~ 345 (377)
T cd03798 334 LAEAILRLLADP 345 (377)
T ss_pred HHHHHHHHhcCc
Confidence 999999999886
No 59
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.60 E-value=0.0012 Score=51.10 Aligned_cols=73 Identities=25% Similarity=0.350 Sum_probs=52.9
Q ss_pred CCChH---HhhcccCCcceecC---------CCh-hhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCC
Q 035557 2 WCPQL---EVLAHEATGCFLTH---------CGW-NSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKG 68 (129)
Q Consensus 2 w~pq~---~iL~~~~~~~~I~h---------gG~-~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~ 68 (129)
|+|+. .++..+++ ||.- -|. .+++||+++|+|+|+-...+ ....+.+. ..|..++..
T Consensus 286 ~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v~~~-~~G~lv~~~--- 355 (406)
T PRK15427 286 FKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELVEAD-KSGWLVPEN--- 355 (406)
T ss_pred CCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhhcCC-CceEEeCCC---
Confidence 67764 46788998 6642 233 67899999999999875432 33445444 578777643
Q ss_pred CccHHHHHHHHHHHHh-Ch
Q 035557 69 IVRREAIAHCIREILE-GE 86 (129)
Q Consensus 69 ~~~~~~l~~~i~~~l~-~~ 86 (129)
+.+++.++|.++++ |+
T Consensus 356 --d~~~la~ai~~l~~~d~ 372 (406)
T PRK15427 356 --DAQALAQRLAAFSQLDT 372 (406)
T ss_pred --CHHHHHHHHHHHHhCCH
Confidence 78999999999998 76
No 60
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=97.58 E-value=0.00066 Score=49.94 Aligned_cols=72 Identities=21% Similarity=0.322 Sum_probs=51.9
Q ss_pred CCChH---HhhcccCCcceecCC----ChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHH
Q 035557 2 WCPQL---EVLAHEATGCFLTHC----GWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREA 74 (129)
Q Consensus 2 w~pq~---~iL~~~~~~~~I~hg----G~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~ 74 (129)
++|+. .++..+++ +|..+ ...+++|++++|+|+|+.+. ...+..+.+. +.|..++.. +. +
T Consensus 266 ~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~-~~g~~~~~~-----~~-~ 332 (374)
T cd03817 266 FVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADG-ENGFLFPPG-----DE-A 332 (374)
T ss_pred cCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecC-ceeEEeCCC-----CH-H
Confidence 45654 46788888 66433 34789999999999998754 2345556665 678888654 22 8
Q ss_pred HHHHHHHHHhCh
Q 035557 75 IAHCIREILEGE 86 (129)
Q Consensus 75 l~~~i~~~l~~~ 86 (129)
+.+++.++++++
T Consensus 333 ~~~~i~~l~~~~ 344 (374)
T cd03817 333 LAEALLRLLQDP 344 (374)
T ss_pred HHHHHHHHHhCh
Confidence 999999999887
No 61
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=97.57 E-value=0.00095 Score=48.63 Aligned_cols=69 Identities=28% Similarity=0.358 Sum_probs=51.5
Q ss_pred HHhhcccCCcceecCCC----hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHH
Q 035557 6 LEVLAHEATGCFLTHCG----WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIRE 81 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hgG----~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ 81 (129)
..+++.+++ +|..+. .++++||+++|+|+|+-+.. .....+.+. +.|..++.+ +.+++.+++.+
T Consensus 258 ~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~~-~~g~~~~~~-----~~~~~~~~i~~ 325 (359)
T cd03808 258 PELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVIDG-VNGFLVPPG-----DAEALADAIER 325 (359)
T ss_pred HHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----CchhhhhcC-cceEEECCC-----CHHHHHHHHHH
Confidence 456788888 665443 57899999999999987543 234555555 678877543 78999999999
Q ss_pred HHhCh
Q 035557 82 ILEGE 86 (129)
Q Consensus 82 ~l~~~ 86 (129)
++.++
T Consensus 326 l~~~~ 330 (359)
T cd03808 326 LIEDP 330 (359)
T ss_pred HHhCH
Confidence 98876
No 62
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=97.57 E-value=0.0019 Score=47.20 Aligned_cols=67 Identities=31% Similarity=0.388 Sum_probs=48.6
Q ss_pred HHhhcccCCcceecCCC----hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHH
Q 035557 6 LEVLAHEATGCFLTHCG----WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIRE 81 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hgG----~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ 81 (129)
..+++.+++ +|..+. .+++.||+++|+|+|+.+. ..+...+.+ .|..+..+ +.+++.+++.+
T Consensus 263 ~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~~~---~g~~~~~~-----~~~~l~~~i~~ 328 (365)
T cd03807 263 PALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELVGD---TGFLVPPG-----DPEALAEAIEA 328 (365)
T ss_pred HHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHhhc---CCEEeCCC-----CHHHHHHHHHH
Confidence 457788888 775544 4799999999999998643 234444443 45566543 68899999999
Q ss_pred HHhCh
Q 035557 82 ILEGE 86 (129)
Q Consensus 82 ~l~~~ 86 (129)
+++++
T Consensus 329 l~~~~ 333 (365)
T cd03807 329 LLADP 333 (365)
T ss_pred HHhCh
Confidence 99876
No 63
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.53 E-value=0.0011 Score=51.18 Aligned_cols=87 Identities=18% Similarity=0.241 Sum_probs=56.0
Q ss_pred CCChHH---hhcccCCcceecCCC----hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHH
Q 035557 2 WCPQLE---VLAHEATGCFLTHCG----WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREA 74 (129)
Q Consensus 2 w~pq~~---iL~~~~~~~~I~hgG----~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~ 74 (129)
|+|+.+ ++..++..+||..+- ..+++||+++|+|+|+-... .....+.+. +.|..+.. ..+.++
T Consensus 296 ~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vg----g~~e~i~~~-~~G~l~~~----~~~~~~ 366 (407)
T cd04946 296 ELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVG----GTPEIVDNG-GNGLLLSK----DPTPNE 366 (407)
T ss_pred CCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCC----CcHHHhcCC-CcEEEeCC----CCCHHH
Confidence 567654 344433333765543 46899999999999986532 244455554 57877754 347899
Q ss_pred HHHHHHHHHhChhh-HHHHHHHHH
Q 035557 75 IAHCIREILEGERC-KEIRQNAGK 97 (129)
Q Consensus 75 l~~~i~~~l~~~~~-~~~~~~a~~ 97 (129)
+.++|.+++++++. +++++++++
T Consensus 367 la~~I~~ll~~~~~~~~m~~~ar~ 390 (407)
T cd04946 367 LVSSLSKFIDNEEEYQTMREKARE 390 (407)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHH
Confidence 99999999987622 334444443
No 64
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=97.48 E-value=8.8e-05 Score=55.80 Aligned_cols=66 Identities=27% Similarity=0.348 Sum_probs=50.2
Q ss_pred HhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhCh
Q 035557 7 EVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEGE 86 (129)
Q Consensus 7 ~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 86 (129)
.++..+++ ||+.+| +.+.|+++.|+|+|.++.. | ....+.+. |++..+. .+.+++.+++.++++++
T Consensus 273 ~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~--~~~~~~~~-g~~~~~~------~~~~~i~~~i~~ll~~~ 338 (363)
T cd03786 273 LLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--T--ERPETVES-GTNVLVG------TDPEAILAAIEKLLSDE 338 (363)
T ss_pred HHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--C--ccchhhhe-eeEEecC------CCHHHHHHHHHHHhcCc
Confidence 45778999 999999 7788999999999998632 2 13355556 7665552 25789999999999876
No 65
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.47 E-value=0.002 Score=48.18 Aligned_cols=80 Identities=28% Similarity=0.255 Sum_probs=54.7
Q ss_pred HHhhcccCCcceecC----CChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHH
Q 035557 6 LEVLAHEATGCFLTH----CGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIRE 81 (129)
Q Consensus 6 ~~iL~~~~~~~~I~h----gG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ 81 (129)
..+++.+++ +|.- +...++.||+++|+|+|+.+.. .....+.+. ..|..++. -+.+++.+++.+
T Consensus 265 ~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~~----~~~e~i~~~-~~G~~~~~-----~~~~~l~~~i~~ 332 (371)
T cd04962 265 EELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNAG----GIPEVVKHG-ETGFLVDV-----GDVEAMAEYALS 332 (371)
T ss_pred HHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCCC----CchhhhcCC-CceEEcCC-----CCHHHHHHHHHH
Confidence 456788888 5533 3356999999999999986542 345555555 56777754 378899999999
Q ss_pred HHhChhh-HHHHHHHHH
Q 035557 82 ILEGERC-KEIRQNAGK 97 (129)
Q Consensus 82 ~l~~~~~-~~~~~~a~~ 97 (129)
++.+++. .++++++++
T Consensus 333 l~~~~~~~~~~~~~~~~ 349 (371)
T cd04962 333 LLEDDELWQEFSRAARN 349 (371)
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 9987622 334444444
No 66
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.43 E-value=0.00073 Score=50.91 Aligned_cols=85 Identities=25% Similarity=0.224 Sum_probs=57.7
Q ss_pred HHhhcccCCcceecCC--ChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHH
Q 035557 6 LEVLAHEATGCFLTHC--GWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREIL 83 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hg--G~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l 83 (129)
..++..+++-.+.++. ...+++||+++|+|+|+..... .....+.+. ..|..++. .+.+++.++|..++
T Consensus 273 ~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~-----~d~~~la~~i~~ll 343 (372)
T cd04949 273 DEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPK-----GDIEALAEAIIELL 343 (372)
T ss_pred HHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCC-----CcHHHHHHHHHHHH
Confidence 4567888884444543 3468999999999999864321 134455555 67888864 37899999999999
Q ss_pred hChhh-HHHHHHHHHHH
Q 035557 84 EGERC-KEIRQNAGKWS 99 (129)
Q Consensus 84 ~~~~~-~~~~~~a~~l~ 99 (129)
.+++. .++.+++.+..
T Consensus 344 ~~~~~~~~~~~~a~~~~ 360 (372)
T cd04949 344 NDPKLLQKFSEAAYENA 360 (372)
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 88722 34555555443
No 67
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.00013 Score=48.39 Aligned_cols=48 Identities=15% Similarity=0.270 Sum_probs=38.1
Q ss_pred HHhhcccCCcceecCCChhhHHHHHHcCCCeeccccc--------ccchhhHHHHHHH
Q 035557 6 LEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQW--------TDQSTNSKCVMDV 55 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~--------~dq~~na~~~~~~ 55 (129)
+.+...+++ +|+|+|.||++.++..++|.|++|-. .+|..-|..+++.
T Consensus 60 Qsli~darI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~ 115 (161)
T COG5017 60 QSLIHDARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEI 115 (161)
T ss_pred HHHhhcceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhc
Confidence 345666777 99999999999999999999999963 2455566667766
No 68
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=97.41 E-value=0.0032 Score=49.49 Aligned_cols=80 Identities=18% Similarity=0.164 Sum_probs=55.4
Q ss_pred HHhhcccCCcceecCCC----hhhHHHHHHcCCCeecccccccchhhHHHHHH---HhcccceecCCCCCCccHHHHHHH
Q 035557 6 LEVLAHEATGCFLTHCG----WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMD---VWKTGLKVPADDKGIVRREAIAHC 78 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hgG----~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~---~~g~g~~~~~~~~~~~~~~~l~~~ 78 (129)
..+++.+++ ||.-.. ..+++|++++|+|+|+.... .....+.+ . +.|..++.. +.+++.++
T Consensus 326 ~~~~~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~-~~G~lv~~~-----d~~~la~~ 393 (465)
T PLN02871 326 SQAYASGDV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEG-KTGFLYTPG-----DVDDCVEK 393 (465)
T ss_pred HHHHHHCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCC-CceEEeCCC-----CHHHHHHH
Confidence 347888999 775543 35789999999999987542 23334444 5 678888643 77899999
Q ss_pred HHHHHhChhh-HHHHHHHHH
Q 035557 79 IREILEGERC-KEIRQNAGK 97 (129)
Q Consensus 79 i~~~l~~~~~-~~~~~~a~~ 97 (129)
|.+++++++- +++.+++++
T Consensus 394 i~~ll~~~~~~~~~~~~a~~ 413 (465)
T PLN02871 394 LETLLADPELRERMGAAARE 413 (465)
T ss_pred HHHHHhCHHHHHHHHHHHHH
Confidence 9999987722 334444443
No 69
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.39 E-value=0.004 Score=47.00 Aligned_cols=69 Identities=22% Similarity=0.239 Sum_probs=51.2
Q ss_pred HHhhcccCCcceec--C--CChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHH
Q 035557 6 LEVLAHEATGCFLT--H--CGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIRE 81 (129)
Q Consensus 6 ~~iL~~~~~~~~I~--h--gG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ 81 (129)
..++..+++ +|. + |-..+++||+++|+|+|+-+.. .+...+.+. ..|..++.. +.+++.+++.+
T Consensus 267 ~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i~~~-~~g~~~~~~-----d~~~la~~i~~ 334 (374)
T TIGR03088 267 PALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELVQHG-VTGALVPPG-----DAVALARALQP 334 (374)
T ss_pred HHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHhcCC-CceEEeCCC-----CHHHHHHHHHH
Confidence 466888888 663 3 3357999999999999997642 244555555 568777543 78899999999
Q ss_pred HHhCh
Q 035557 82 ILEGE 86 (129)
Q Consensus 82 ~l~~~ 86 (129)
+++++
T Consensus 335 l~~~~ 339 (374)
T TIGR03088 335 YVSDP 339 (374)
T ss_pred HHhCH
Confidence 99876
No 70
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=97.36 E-value=0.0039 Score=46.27 Aligned_cols=68 Identities=22% Similarity=0.173 Sum_probs=49.2
Q ss_pred HhhcccCCcceecCCC----hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHH
Q 035557 7 EVLAHEATGCFLTHCG----WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREI 82 (129)
Q Consensus 7 ~iL~~~~~~~~I~hgG----~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~ 82 (129)
.+++.+++ ++.... ..+++||+++|+|+|+.... .....+.+. +.|..++. .+.+++.+++.++
T Consensus 260 ~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~~-~~g~~~~~-----~~~~~~~~~l~~l 327 (365)
T cd03825 260 LIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDHG-VTGYLAKP-----GDPEDLAEGIEWL 327 (365)
T ss_pred HHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeCC-CceEEeCC-----CCHHHHHHHHHHH
Confidence 46888898 777543 58999999999999987542 222333333 46766653 3788999999999
Q ss_pred HhCh
Q 035557 83 LEGE 86 (129)
Q Consensus 83 l~~~ 86 (129)
++++
T Consensus 328 ~~~~ 331 (365)
T cd03825 328 LADP 331 (365)
T ss_pred HhCH
Confidence 9887
No 71
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.36 E-value=0.003 Score=50.03 Aligned_cols=83 Identities=16% Similarity=0.102 Sum_probs=44.8
Q ss_pred cccCCcc-eecCCChhhHHHHHHcCCCeecccccccchh-hHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhChh
Q 035557 10 AHEATGC-FLTHCGWNSTMEARSLGVPMVAMPQWTDQST-NSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEGER 87 (129)
Q Consensus 10 ~~~~~~~-~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~-na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~ 87 (129)
..+|+.+ -...+|.+|++||++.|||+|.+|-..-.-. -+..+... |+...+- .+.++..+..-++-.|.
T Consensus 360 ~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~l-Gl~ElIA------~s~~eYv~~Av~La~D~- 431 (468)
T PF13844_consen 360 QLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRAL-GLPELIA------DSEEEYVEIAVRLATDP- 431 (468)
T ss_dssp GG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHH-T-GGGB-------SSHHHHHHHHHHHHH-H-
T ss_pred hhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHc-CCchhcC------CCHHHHHHHHHHHhCCH-
Confidence 4466621 2345688999999999999999984332323 44556666 9988773 35666666666777776
Q ss_pred hHHHHHHHH-HHHHHH
Q 035557 88 CKEIRQNAG-KWSNFA 102 (129)
Q Consensus 88 ~~~~~~~a~-~l~~~~ 102 (129)
+++.+.+ ++++..
T Consensus 432 --~~l~~lR~~Lr~~~ 445 (468)
T PF13844_consen 432 --ERLRALRAKLRDRR 445 (468)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHH
Confidence 5444444 344443
No 72
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=97.33 E-value=0.0041 Score=45.65 Aligned_cols=71 Identities=21% Similarity=0.161 Sum_probs=48.4
Q ss_pred CCCh---HHhhcccCCcceecCCC----hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHH
Q 035557 2 WCPQ---LEVLAHEATGCFLTHCG----WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREA 74 (129)
Q Consensus 2 w~pq---~~iL~~~~~~~~I~hgG----~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~ 74 (129)
|+|+ ..++..+++ +|.-.- ..++.||+++|+|+|+.+..+ ....+. . +.|...+. +.++
T Consensus 269 ~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~----~~~~~~-~-~~~~~~~~------~~~~ 334 (375)
T cd03821 269 MLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKVP----WQELIE-Y-GCGWVVDD------DVDA 334 (375)
T ss_pred CCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCCC----HHHHhh-c-CceEEeCC------ChHH
Confidence 5563 345788888 554332 478999999999999976422 222332 3 56766643 3489
Q ss_pred HHHHHHHHHhCh
Q 035557 75 IAHCIREILEGE 86 (129)
Q Consensus 75 l~~~i~~~l~~~ 86 (129)
+.++|.+++.++
T Consensus 335 ~~~~i~~l~~~~ 346 (375)
T cd03821 335 LAAALRRALELP 346 (375)
T ss_pred HHHHHHHHHhCH
Confidence 999999999886
No 73
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=97.33 E-value=0.0017 Score=47.82 Aligned_cols=68 Identities=28% Similarity=0.311 Sum_probs=48.6
Q ss_pred HhhcccCCcceecCCC---------hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHH
Q 035557 7 EVLAHEATGCFLTHCG---------WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAH 77 (129)
Q Consensus 7 ~iL~~~~~~~~I~hgG---------~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~ 77 (129)
.+++.+++ +|.... .+++.||+++|+|+|+.+..+. ...+.+. +.|..++.. +.+++.+
T Consensus 290 ~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~----~~~~~~~-~~g~~~~~~-----~~~~l~~ 357 (394)
T cd03794 290 ELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGES----AELVEEA-GAGLVVPPG-----DPEALAA 357 (394)
T ss_pred HHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCc----hhhhccC-CcceEeCCC-----CHHHHHH
Confidence 46788888 553322 3457999999999999876543 2233444 567777543 7899999
Q ss_pred HHHHHHhCh
Q 035557 78 CIREILEGE 86 (129)
Q Consensus 78 ~i~~~l~~~ 86 (129)
++.+++.++
T Consensus 358 ~i~~~~~~~ 366 (394)
T cd03794 358 AILELLDDP 366 (394)
T ss_pred HHHHHHhCh
Confidence 999999776
No 74
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=97.31 E-value=0.0042 Score=47.42 Aligned_cols=80 Identities=23% Similarity=0.182 Sum_probs=54.0
Q ss_pred HHhhcccCCcceecC----CChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHH
Q 035557 6 LEVLAHEATGCFLTH----CGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIRE 81 (129)
Q Consensus 6 ~~iL~~~~~~~~I~h----gG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ 81 (129)
..+|+.+++ +|.- +...+++||+++|+|+|+.... .....+.+. ..|..++. -+.+++.++|.+
T Consensus 297 ~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~~-----~d~~~la~~i~~ 364 (405)
T TIGR03449 297 VHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVADG-ETGLLVDG-----HDPADWADALAR 364 (405)
T ss_pred HHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhccC-CceEECCC-----CCHHHHHHHHHH
Confidence 356888888 5532 2246899999999999987542 233445555 67777754 378999999999
Q ss_pred HHhChhh-HHHHHHHHH
Q 035557 82 ILEGERC-KEIRQNAGK 97 (129)
Q Consensus 82 ~l~~~~~-~~~~~~a~~ 97 (129)
++++++. .++++++++
T Consensus 365 ~l~~~~~~~~~~~~~~~ 381 (405)
T TIGR03449 365 LLDDPRTRIRMGAAAVE 381 (405)
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 9987621 334444443
No 75
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=97.29 E-value=0.0017 Score=50.32 Aligned_cols=84 Identities=18% Similarity=0.258 Sum_probs=57.8
Q ss_pred CCChH---HhhcccCCcceec----CCC---hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCcc
Q 035557 2 WCPQL---EVLAHEATGCFLT----HCG---WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVR 71 (129)
Q Consensus 2 w~pq~---~iL~~~~~~~~I~----hgG---~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~ 71 (129)
|+|.. .+|+.+++ ++. ..| .++++|++++|+|+|+... ......+.+. +.|..+ . +
T Consensus 302 ~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv~~~-~~G~lv--~-----d 367 (415)
T cd03816 302 WLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELVKHG-ENGLVF--G-----D 367 (415)
T ss_pred cCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHhcCC-CCEEEE--C-----C
Confidence 45543 45788998 663 112 3579999999999998643 2345566666 778877 2 5
Q ss_pred HHHHHHHHHHHHhC---hh-hHHHHHHHHHHH
Q 035557 72 REAIAHCIREILEG---ER-CKEIRQNAGKWS 99 (129)
Q Consensus 72 ~~~l~~~i~~~l~~---~~-~~~~~~~a~~l~ 99 (129)
.+++.++|.+++++ ++ .+.+.+++++.+
T Consensus 368 ~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 368 SEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 79999999999988 52 245666665544
No 76
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=97.29 E-value=0.0024 Score=48.91 Aligned_cols=75 Identities=23% Similarity=0.206 Sum_probs=51.7
Q ss_pred CCChH---HhhcccCCcceecCC-C-hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHH
Q 035557 2 WCPQL---EVLAHEATGCFLTHC-G-WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIA 76 (129)
Q Consensus 2 w~pq~---~iL~~~~~~~~I~hg-G-~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~ 76 (129)
++|+. .+|+.+++-.+.+.. | ..+++||+++|+|+|+... ......+.+. ..|..++.. +++++.
T Consensus 288 ~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i~~~-~~G~lv~~~-----d~~~la 357 (396)
T cd03818 288 RVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVITDG-ENGLLVDFF-----DPDALA 357 (396)
T ss_pred CCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhcccC-CceEEcCCC-----CHHHHH
Confidence 45654 356788883333332 2 2489999999999998743 2344555554 567777543 789999
Q ss_pred HHHHHHHhCh
Q 035557 77 HCIREILEGE 86 (129)
Q Consensus 77 ~~i~~~l~~~ 86 (129)
++|.++++++
T Consensus 358 ~~i~~ll~~~ 367 (396)
T cd03818 358 AAVIELLDDP 367 (396)
T ss_pred HHHHHHHhCH
Confidence 9999999887
No 77
>PRK10307 putative glycosyl transferase; Provisional
Probab=97.28 E-value=0.0041 Score=47.79 Aligned_cols=106 Identities=14% Similarity=0.124 Sum_probs=63.9
Q ss_pred CCChH---HhhcccCCcceecCCCh------hhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccH
Q 035557 2 WCPQL---EVLAHEATGCFLTHCGW------NSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRR 72 (129)
Q Consensus 2 w~pq~---~iL~~~~~~~~I~hgG~------~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~ 72 (129)
|+|+. .+++.+++..+.+..+. +.+.|++++|+|+|+.+..+.. ....+. +.|..++.. +.
T Consensus 291 ~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~---~~G~~~~~~-----d~ 360 (412)
T PRK10307 291 LQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE---GIGVCVEPE-----SV 360 (412)
T ss_pred CCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh---CCcEEeCCC-----CH
Confidence 45543 46788888555555432 3478999999999998643311 112222 568888644 78
Q ss_pred HHHHHHHHHHHhChhh-HHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 035557 73 EAIAHCIREILEGERC-KEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSI 124 (129)
Q Consensus 73 ~~l~~~i~~~l~~~~~-~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 124 (129)
+++.++|.+++++++. +.+++++++..+. .-+....++.+++.+.
T Consensus 361 ~~la~~i~~l~~~~~~~~~~~~~a~~~~~~-------~fs~~~~~~~~~~~~~ 406 (412)
T PRK10307 361 EALVAAIAALARQALLRPKLGTVAREYAER-------TLDKENVLRQFIADIR 406 (412)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-------HcCHHHHHHHHHHHHH
Confidence 9999999999987622 3455555543322 1344444455544443
No 78
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=97.24 E-value=0.0053 Score=46.39 Aligned_cols=74 Identities=26% Similarity=0.328 Sum_probs=50.8
Q ss_pred HHhhcccCCcceecC----CChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCC-CCCccHHHHHHHHH
Q 035557 6 LEVLAHEATGCFLTH----CGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADD-KGIVRREAIAHCIR 80 (129)
Q Consensus 6 ~~iL~~~~~~~~I~h----gG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~-~~~~~~~~l~~~i~ 80 (129)
..++.++++ +|.- +-..+++||+++|+|+|+.+. ......+.+. ..|..++... ...-..+.+.++|.
T Consensus 275 ~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~-~~G~~~~~~~~~~~~~~~~l~~~i~ 347 (388)
T TIGR02149 275 VELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDG-ETGFLVPPDNSDADGFQAELAKAIN 347 (388)
T ss_pred HHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCC-CceEEcCCCCCcccchHHHHHHHHH
Confidence 456788898 6653 224678999999999998754 2355556666 6788886541 00112378999999
Q ss_pred HHHhCh
Q 035557 81 EILEGE 86 (129)
Q Consensus 81 ~~l~~~ 86 (129)
++++++
T Consensus 348 ~l~~~~ 353 (388)
T TIGR02149 348 ILLADP 353 (388)
T ss_pred HHHhCH
Confidence 999887
No 79
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=97.22 E-value=0.0024 Score=47.21 Aligned_cols=69 Identities=29% Similarity=0.320 Sum_probs=49.3
Q ss_pred HHhhcccCCcceec--C--------CChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHH
Q 035557 6 LEVLAHEATGCFLT--H--------CGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAI 75 (129)
Q Consensus 6 ~~iL~~~~~~~~I~--h--------gG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l 75 (129)
..+++.+++ ++. . +..++++|++++|+|+|+.+... ....+.+. ..|..+.. -+.+++
T Consensus 250 ~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~-~~g~~~~~-----~~~~~l 317 (355)
T cd03799 250 RELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDG-ETGLLVPP-----GDPEAL 317 (355)
T ss_pred HHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCC-CceEEeCC-----CCHHHH
Confidence 356678888 555 2 33478999999999999876422 22344444 47877754 378999
Q ss_pred HHHHHHHHhCh
Q 035557 76 AHCIREILEGE 86 (129)
Q Consensus 76 ~~~i~~~l~~~ 86 (129)
.++|.+++.++
T Consensus 318 ~~~i~~~~~~~ 328 (355)
T cd03799 318 ADAIERLLDDP 328 (355)
T ss_pred HHHHHHHHhCH
Confidence 99999999887
No 80
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.20 E-value=0.0017 Score=49.80 Aligned_cols=67 Identities=25% Similarity=0.268 Sum_probs=47.5
Q ss_pred HHhhcccCCccee--cC--CCh-hhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHH
Q 035557 6 LEVLAHEATGCFL--TH--CGW-NSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIR 80 (129)
Q Consensus 6 ~~iL~~~~~~~~I--~h--gG~-~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~ 80 (129)
..+++.+++ +| ++ .|. +.++||+++|+|+|+.+...+... ... |.|..+. . +++++.++|.
T Consensus 292 ~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i~-----~~~-~~g~lv~-~-----~~~~la~ai~ 357 (397)
T TIGR03087 292 RPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGID-----ALP-GAELLVA-A-----DPADFAAAIL 357 (397)
T ss_pred HHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCccccccc-----ccC-CcceEeC-C-----CHHHHHHHHH
Confidence 456788888 55 33 343 469999999999999875332211 123 5676663 3 7899999999
Q ss_pred HHHhCh
Q 035557 81 EILEGE 86 (129)
Q Consensus 81 ~~l~~~ 86 (129)
+++.|+
T Consensus 358 ~ll~~~ 363 (397)
T TIGR03087 358 ALLANP 363 (397)
T ss_pred HHHcCH
Confidence 999887
No 81
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.16 E-value=0.0029 Score=47.64 Aligned_cols=79 Identities=19% Similarity=0.282 Sum_probs=57.7
Q ss_pred hHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHH
Q 035557 25 STMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEGERCKEIRQNAGKWSNFAKE 104 (129)
Q Consensus 25 s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~ 104 (129)
-+.+.+++|+|+|+.+ ....+..+.+. ++|..++ +.+++.+++..+. +++-.++++|++++++.++.
T Consensus 252 K~~~ymA~G~PVI~~~----~~~~~~~V~~~-~~G~~v~-------~~~el~~~l~~~~-~~~~~~m~~n~~~~~~~~~~ 318 (333)
T PRK09814 252 KLSLYLAAGLPVIVWS----KAAIADFIVEN-GLGFVVD-------SLEELPEIIDNIT-EEEYQEMVENVKKISKLLRN 318 (333)
T ss_pred HHHHHHHCCCCEEECC----CccHHHHHHhC-CceEEeC-------CHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhc
Confidence 3778899999999865 35577888888 9999984 4467888887753 33345789999999999887
Q ss_pred HhhcCCChHHHHHHHH
Q 035557 105 AVTKGGSSDKNIDDFV 120 (129)
Q Consensus 105 ~~~~~g~~~~~~~~~~ 120 (129)
|.--.+++.+++
T Consensus 319 ----g~~~~~~~~~~~ 330 (333)
T PRK09814 319 ----GYFTKKALVDAI 330 (333)
T ss_pred ----chhHHHHHHHHH
Confidence 333344444444
No 82
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=97.13 E-value=0.0044 Score=46.86 Aligned_cols=67 Identities=13% Similarity=0.133 Sum_probs=47.4
Q ss_pred hcccCCcceecCC----ChhhHHHHHHcCCCeeccc-ccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHH
Q 035557 9 LAHEATGCFLTHC----GWNSTMEARSLGVPMVAMP-QWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREIL 83 (129)
Q Consensus 9 L~~~~~~~~I~hg----G~~s~~eal~~gvP~i~~P-~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l 83 (129)
+..+++ +|... -..++.||+++|+|+|+.. ..+ ....+.+. ..|..++. -+.+++.++|.+++
T Consensus 255 ~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~-~~G~lv~~-----~d~~~la~~i~~l~ 322 (359)
T PRK09922 255 IKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPG-LNGELYTP-----GNIDEFVGKLNKVI 322 (359)
T ss_pred HhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCC-CceEEECC-----CCHHHHHHHHHHHH
Confidence 445677 55432 2579999999999999874 322 22344444 56877754 48899999999999
Q ss_pred hChh
Q 035557 84 EGER 87 (129)
Q Consensus 84 ~~~~ 87 (129)
++++
T Consensus 323 ~~~~ 326 (359)
T PRK09922 323 SGEV 326 (359)
T ss_pred hCcc
Confidence 8873
No 83
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=97.10 E-value=0.0039 Score=48.48 Aligned_cols=74 Identities=18% Similarity=0.307 Sum_probs=57.0
Q ss_pred ceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhChhh-HHHHHH
Q 035557 16 CFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEGERC-KEIRQN 94 (129)
Q Consensus 16 ~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~-~~~~~~ 94 (129)
.|+.+||+| .+|.+++|+|+|.=|+...|..-++++.+. |.|+.++ +.+.+.+++..++.|++. +.|.++
T Consensus 326 Slv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~-ga~~~v~-------~~~~l~~~v~~l~~~~~~r~~~~~~ 396 (419)
T COG1519 326 SLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQA-GAGLQVE-------DADLLAKAVELLLADEDKREAYGRA 396 (419)
T ss_pred cccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHhc-CCeEEEC-------CHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 366677765 679999999999999999999999999999 9999884 267788888888776622 334444
Q ss_pred HHHH
Q 035557 95 AGKW 98 (129)
Q Consensus 95 a~~l 98 (129)
..++
T Consensus 397 ~~~~ 400 (419)
T COG1519 397 GLEF 400 (419)
T ss_pred HHHH
Confidence 4443
No 84
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.10 E-value=0.0015 Score=48.48 Aligned_cols=83 Identities=20% Similarity=0.171 Sum_probs=65.0
Q ss_pred HhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhCh
Q 035557 7 EVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEGE 86 (129)
Q Consensus 7 ~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 86 (129)
.++..++. .|+-+| .|++|++..|+|.+++|+...|.--|..++.. |+-..+.. .++...+..-+.+++.|.
T Consensus 223 ~LMke~d~--aI~AaG-stlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~l-g~~~~l~~----~l~~~~~~~~~~~i~~d~ 294 (318)
T COG3980 223 ELMKEADL--AISAAG-STLYEALLLGVPSLVLPLAENQIATAKEFEAL-GIIKQLGY----HLKDLAKDYEILQIQKDY 294 (318)
T ss_pred HHHHhcch--heeccc-hHHHHHHHhcCCceEEeeeccHHHHHHHHHhc-CchhhccC----CCchHHHHHHHHHhhhCH
Confidence 46778888 888766 78999999999999999999999999999998 77666643 356667777777888876
Q ss_pred hhHHHHHHHHHHHH
Q 035557 87 RCKEIRQNAGKWSN 100 (129)
Q Consensus 87 ~~~~~~~~a~~l~~ 100 (129)
..|.+...-++
T Consensus 295 ---~~rk~l~~~~~ 305 (318)
T COG3980 295 ---ARRKNLSFGSK 305 (318)
T ss_pred ---HHhhhhhhccc
Confidence 66665554443
No 85
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=97.09 E-value=0.0085 Score=46.76 Aligned_cols=62 Identities=24% Similarity=0.324 Sum_probs=46.1
Q ss_pred CCcceecCC---C-hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhCh
Q 035557 13 ATGCFLTHC---G-WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEGE 86 (129)
Q Consensus 13 ~~~~~I~hg---G-~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 86 (129)
++ ||... | ..+++||+++|+|+|+-... -....+.+. ..|..++.. +++++.++|.++++++
T Consensus 342 Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv~~~-~~G~lv~~~-----d~~~la~~i~~ll~~~ 407 (439)
T TIGR02472 342 GI--FVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDIIANC-RNGLLVDVL-----DLEAIASALEDALSDS 407 (439)
T ss_pred CE--EecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHhcCC-CcEEEeCCC-----CHHHHHHHHHHHHhCH
Confidence 66 77644 3 46999999999999988542 244455554 568877644 7889999999999887
No 86
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.09 E-value=0.0016 Score=48.75 Aligned_cols=75 Identities=19% Similarity=0.227 Sum_probs=52.2
Q ss_pred CCCh---HHhhcccCCcceecCCCh-hhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHH
Q 035557 2 WCPQ---LEVLAHEATGCFLTHCGW-NSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAH 77 (129)
Q Consensus 2 w~pq---~~iL~~~~~~~~I~hgG~-~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~ 77 (129)
|+|+ ..+++.+++-++-+.-|. .++.|++++|+|+|+....+ ....+.+. ..|..++.+ +.+++.+
T Consensus 249 ~~~~~~~~~~~~~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~~-----~~~~la~ 318 (351)
T cd03804 249 RVSDEELRDLYARARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEEQ-----TVESLAA 318 (351)
T ss_pred CCCHHHHHHHHHhCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCCC-----CHHHHHH
Confidence 5665 456888998333334333 56789999999999986432 23334454 578887643 7888999
Q ss_pred HHHHHHhCh
Q 035557 78 CIREILEGE 86 (129)
Q Consensus 78 ~i~~~l~~~ 86 (129)
+|.++++++
T Consensus 319 ~i~~l~~~~ 327 (351)
T cd03804 319 AVERFEKNE 327 (351)
T ss_pred HHHHHHhCc
Confidence 999999876
No 87
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=97.03 E-value=0.0077 Score=44.58 Aligned_cols=76 Identities=29% Similarity=0.272 Sum_probs=49.4
Q ss_pred HHhhcccCCcceecCCC----hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHH
Q 035557 6 LEVLAHEATGCFLTHCG----WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIRE 81 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hgG----~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ 81 (129)
..+++.+++ +|.-.. .++++||+++|+|+|+... ..+...+.+. |..+.. .+.+++.+++.+
T Consensus 257 ~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~----~~~~e~i~~~---g~~~~~-----~~~~~~~~~i~~ 322 (360)
T cd04951 257 AAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVATDA----GGVREVVGDS---GLIVPI-----SDPEALANKIDE 322 (360)
T ss_pred HHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEecC----CChhhEecCC---ceEeCC-----CCHHHHHHHHHH
Confidence 466788888 555433 5789999999999997543 3344444433 444543 378899999999
Q ss_pred HHhChhhHHHHHHHHH
Q 035557 82 ILEGERCKEIRQNAGK 97 (129)
Q Consensus 82 ~l~~~~~~~~~~~a~~ 97 (129)
+++++ ..+++.+.+
T Consensus 323 ll~~~--~~~~~~~~~ 336 (360)
T cd04951 323 ILKMS--GEERDIIGA 336 (360)
T ss_pred HHhCC--HHHHHHHHH
Confidence 98433 144444433
No 88
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=96.98 E-value=0.0048 Score=49.29 Aligned_cols=93 Identities=20% Similarity=0.201 Sum_probs=57.8
Q ss_pred CChHHhhcccCCcceecCC---C-hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCC--CCCcc-HHHH
Q 035557 3 CPQLEVLAHEATGCFLTHC---G-WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADD--KGIVR-REAI 75 (129)
Q Consensus 3 ~pq~~iL~~~~~~~~I~hg---G-~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~--~~~~~-~~~l 75 (129)
.+...++..+++ ||.-+ | ..+++||+++|+|+|+....+ -+...+.+- ..|..++... .+.-+ .+.+
T Consensus 384 ~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g-~nG~lv~~~~~~~d~~~~~~~l 457 (500)
T TIGR02918 384 RNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDN-KNGYLIPIDEEEDDEDQIITAL 457 (500)
T ss_pred CCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCC-CCEEEEeCCccccchhHHHHHH
Confidence 345677888888 66432 2 478999999999999975421 133445444 5687776320 00112 7889
Q ss_pred HHHHHHHHhChhhHHHHHHHHHHHHH
Q 035557 76 AHCIREILEGERCKEIRQNAGKWSNF 101 (129)
Q Consensus 76 ~~~i~~~l~~~~~~~~~~~a~~l~~~ 101 (129)
+++|.++++++...++.+++.+.++.
T Consensus 458 a~~I~~ll~~~~~~~~~~~a~~~a~~ 483 (500)
T TIGR02918 458 AEKIVEYFNSNDIDAFHEYSYQIAEG 483 (500)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHh
Confidence 99999999544334555666554433
No 89
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=96.90 E-value=0.015 Score=35.36 Aligned_cols=82 Identities=15% Similarity=0.102 Sum_probs=48.6
Q ss_pred CCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhc-ccceecCCCCCCccHHHHHHHHHHHHhChhhHHHHHHHHHH
Q 035557 20 HCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWK-TGLKVPADDKGIVRREAIAHCIREILEGERCKEIRQNAGKW 98 (129)
Q Consensus 20 hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g-~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l 98 (129)
.+-..-++|++++|+|+|+-+. ......+ .. | -++.. . +.+++.+++..+++++ +.+++-+.+-
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~-~~-~~~~~~~------~-~~~el~~~i~~ll~~~--~~~~~ia~~a 73 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF-ED-GEHIITY------N-DPEELAEKIEYLLENP--EERRRIAKNA 73 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc-CC-CCeEEEE------C-CHHHHHHHHHHHHCCH--HHHHHHHHHH
Confidence 4445689999999999998853 1111111 11 2 22222 2 8899999999999988 2333333333
Q ss_pred HHHHHHHhhcCCChHHHHHHHH
Q 035557 99 SNFAKEAVTKGGSSDKNIDDFV 120 (129)
Q Consensus 99 ~~~~~~~~~~~g~~~~~~~~~~ 120 (129)
.+.+.+ .-+....++.|+
T Consensus 74 ~~~v~~----~~t~~~~~~~il 91 (92)
T PF13524_consen 74 RERVLK----RHTWEHRAEQIL 91 (92)
T ss_pred HHHHHH----hCCHHHHHHHHH
Confidence 344433 355566666554
No 90
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=96.86 E-value=0.0085 Score=45.34 Aligned_cols=83 Identities=17% Similarity=0.139 Sum_probs=54.1
Q ss_pred CCChH---HhhcccCCcceecCCC----hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHH
Q 035557 2 WCPQL---EVLAHEATGCFLTHCG----WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREA 74 (129)
Q Consensus 2 w~pq~---~iL~~~~~~~~I~hgG----~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~ 74 (129)
++|+. .+|..+++ ++.... ..+++||+++|+|+|+.-.. .....+.+. +.|..++ .+.++
T Consensus 287 ~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i~~~-~~g~~~~------~~~~~ 353 (392)
T cd03805 287 SISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETVVDG-ETGFLCE------PTPEE 353 (392)
T ss_pred CCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHhccC-CceEEeC------CCHHH
Confidence 45543 56788888 653222 36789999999999987432 233445554 5676663 26789
Q ss_pred HHHHHHHHHhChhh-HHHHHHHHH
Q 035557 75 IAHCIREILEGERC-KEIRQNAGK 97 (129)
Q Consensus 75 l~~~i~~~l~~~~~-~~~~~~a~~ 97 (129)
+.++|.+++++++. +++.+++++
T Consensus 354 ~a~~i~~l~~~~~~~~~~~~~a~~ 377 (392)
T cd03805 354 FAEAMLKLANDPDLADRMGAAGRK 377 (392)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHH
Confidence 99999999987621 344444443
No 91
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=96.82 E-value=0.014 Score=43.04 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=50.0
Q ss_pred CCChH---HhhcccCCcceecC----CChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHH
Q 035557 2 WCPQL---EVLAHEATGCFLTH----CGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREA 74 (129)
Q Consensus 2 w~pq~---~iL~~~~~~~~I~h----gG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~ 74 (129)
|+|+. .+++.+++ ++.- +...+++||+++|+|+|+-...+ ....+. ..|..+.. .+.++
T Consensus 260 ~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~---~~~~~~~~-----~~~~~ 325 (365)
T cd03809 260 YVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAG---DAALYFDP-----LDPEA 325 (365)
T ss_pred CCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceec---CceeeeCC-----CCHHH
Confidence 45543 56778887 4432 23468999999999999865421 111122 23445543 37889
Q ss_pred HHHHHHHHHhChhhHHHHHHHHH
Q 035557 75 IAHCIREILEGERCKEIRQNAGK 97 (129)
Q Consensus 75 l~~~i~~~l~~~~~~~~~~~a~~ 97 (129)
+.+++.+++.++ +.+..+.+
T Consensus 326 ~~~~i~~l~~~~---~~~~~~~~ 345 (365)
T cd03809 326 LAAAIERLLEDP---ALREELRE 345 (365)
T ss_pred HHHHHHHHhcCH---HHHHHHHH
Confidence 999999999887 54444443
No 92
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=96.77 E-value=0.013 Score=43.37 Aligned_cols=83 Identities=22% Similarity=0.263 Sum_probs=54.0
Q ss_pred HHhhcccCCcceecCC----C-hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHH
Q 035557 6 LEVLAHEATGCFLTHC----G-WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIR 80 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hg----G-~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~ 80 (129)
..+|+.+++ +|.-. | .++++||+++|+|+|+... ......+.+. +.|..++. -+.+++.++|.
T Consensus 258 ~~~l~~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~-----~~~~~l~~~i~ 325 (355)
T cd03819 258 PAAYALADI--VVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETVRPG-ETGLLVPP-----GDAEALAQALD 325 (355)
T ss_pred HHHHHhCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHHhCC-CceEEeCC-----CCHHHHHHHHH
Confidence 456788888 55432 2 3699999999999998743 2344555555 57888854 38889999997
Q ss_pred HHHh-Chh-hHHHHHHHHHHHH
Q 035557 81 EILE-GER-CKEIRQNAGKWSN 100 (129)
Q Consensus 81 ~~l~-~~~-~~~~~~~a~~l~~ 100 (129)
.++. +++ ..++++++++..+
T Consensus 326 ~~~~~~~~~~~~~~~~a~~~~~ 347 (355)
T cd03819 326 QILSLLPEGRAKMFAKARMCVE 347 (355)
T ss_pred HHHhhCHHHHHHHHHHHHHHHH
Confidence 5553 441 2345555554443
No 93
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=96.66 E-value=0.013 Score=42.37 Aligned_cols=69 Identities=26% Similarity=0.267 Sum_probs=46.9
Q ss_pred HHhhcccCCcceecC----CChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHH---HHH
Q 035557 6 LEVLAHEATGCFLTH----CGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAI---AHC 78 (129)
Q Consensus 6 ~~iL~~~~~~~~I~h----gG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l---~~~ 78 (129)
..++..+++ +|.- +..++++|++++|+|+|+.+.. .....+.+. ..|..++.+ +.+.+ .+.
T Consensus 258 ~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~~-----~~~~~~~~~~~ 325 (353)
T cd03811 258 YPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDG-ENGLLVPVG-----DEAALAAAALA 325 (353)
T ss_pred HHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCC-CceEEECCC-----CHHHHHHHHHH
Confidence 457788888 5532 3357899999999999986442 455667777 788888643 66666 445
Q ss_pred HHHHHhCh
Q 035557 79 IREILEGE 86 (129)
Q Consensus 79 i~~~l~~~ 86 (129)
+..+..++
T Consensus 326 i~~~~~~~ 333 (353)
T cd03811 326 LLDLLLDP 333 (353)
T ss_pred HHhccCCh
Confidence 55555554
No 94
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.65 E-value=0.033 Score=43.98 Aligned_cols=70 Identities=23% Similarity=0.275 Sum_probs=48.8
Q ss_pred HHhhcccCCcceecCC----ChhhHHHHHHcCCCeecccccccchhhHHHHHHH----h-cccceecCCCCCCccHHHHH
Q 035557 6 LEVLAHEATGCFLTHC----GWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDV----W-KTGLKVPADDKGIVRREAIA 76 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hg----G~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~----~-g~g~~~~~~~~~~~~~~~l~ 76 (129)
..+++.+++ +|... -..+++||+++|+|+|+-.. ......+.+. + ..|..++. .+.+++.
T Consensus 365 ~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv~~~~~~~~g~~G~lv~~-----~d~~~la 433 (475)
T cd03813 365 KEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELIEGADDEALGPAGEVVPP-----ADPEALA 433 (475)
T ss_pred HHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHhcCCcccccCCceEEECC-----CCHHHHH
Confidence 456777777 55432 34789999999999998543 3334444441 0 26777754 4789999
Q ss_pred HHHHHHHhCh
Q 035557 77 HCIREILEGE 86 (129)
Q Consensus 77 ~~i~~~l~~~ 86 (129)
+++.+++.++
T Consensus 434 ~ai~~ll~~~ 443 (475)
T cd03813 434 RAILRLLKDP 443 (475)
T ss_pred HHHHHHhcCH
Confidence 9999999887
No 95
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.54 E-value=0.049 Score=42.82 Aligned_cols=100 Identities=6% Similarity=0.083 Sum_probs=65.1
Q ss_pred HhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccce-ecCCCCCCccHHHHHHHHHHHHhC
Q 035557 7 EVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLK-VPADDKGIVRREAIAHCIREILEG 85 (129)
Q Consensus 7 ~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~-~~~~~~~~~~~~~l~~~i~~~l~~ 85 (129)
.+++++++ +|..= .-++.=|+..|||.+.+++ | +....++.+. |.... ++.+ .++.+++.+.+.+++++
T Consensus 323 ~iIs~~dl--~ig~R-lHa~I~a~~~gvP~i~i~Y--~-~K~~~~~~~l-g~~~~~~~~~---~l~~~~Li~~v~~~~~~ 392 (426)
T PRK10017 323 KILGACEL--TVGTR-LHSAIISMNFGTPAIAINY--E-HKSAGIMQQL-GLPEMAIDIR---HLLDGSLQAMVADTLGQ 392 (426)
T ss_pred HHHhhCCE--EEEec-chHHHHHHHcCCCEEEeee--h-HHHHHHHHHc-CCccEEechh---hCCHHHHHHHHHHHHhC
Confidence 56677776 66542 3355567789999999987 2 3444455666 87755 5555 78889999999999987
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 035557 86 ERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSI 124 (129)
Q Consensus 86 ~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 124 (129)
. +++++..++..+.++. .+.+.+.++++.+.
T Consensus 393 r--~~~~~~l~~~v~~~r~------~~~~~~~~~~~~~~ 423 (426)
T PRK10017 393 L--PALNARLAEAVSRERQ------TGMQMVQSVLERIG 423 (426)
T ss_pred H--HHHHHHHHHHHHHHHH------HHHHHHHHHHHHhc
Confidence 6 3566555554444443 33445555655543
No 96
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=96.38 E-value=0.017 Score=42.87 Aligned_cols=68 Identities=19% Similarity=0.074 Sum_probs=47.0
Q ss_pred HHhhcccCCcceecC----CChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHH
Q 035557 6 LEVLAHEATGCFLTH----CGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIRE 81 (129)
Q Consensus 6 ~~iL~~~~~~~~I~h----gG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ 81 (129)
..++..+++ +|.- |-..+++||+++|+|+|+-...+ ....+.+ +.+.... ..+++++.++|.+
T Consensus 261 ~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~-----~~~~~~~a~~i~~ 327 (358)
T cd03812 261 PELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSL-----DESPEIWAEEILK 327 (358)
T ss_pred HHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeC-----CCCHHHHHHHHHH
Confidence 456778888 5543 33589999999999999875433 2223332 3454443 2357999999999
Q ss_pred HHhCh
Q 035557 82 ILEGE 86 (129)
Q Consensus 82 ~l~~~ 86 (129)
+++++
T Consensus 328 l~~~~ 332 (358)
T cd03812 328 LKSED 332 (358)
T ss_pred HHhCc
Confidence 99987
No 97
>PHA01630 putative group 1 glycosyl transferase
Probab=96.29 E-value=0.059 Score=40.83 Aligned_cols=107 Identities=13% Similarity=0.038 Sum_probs=57.8
Q ss_pred HhhcccCCcceecCCC--hhhHHHHHHcCCCeecccccc--cchh---hHHHHH-----------HHhcccceecCCCCC
Q 035557 7 EVLAHEATGCFLTHCG--WNSTMEARSLGVPMVAMPQWT--DQST---NSKCVM-----------DVWKTGLKVPADDKG 68 (129)
Q Consensus 7 ~iL~~~~~~~~I~hgG--~~s~~eal~~gvP~i~~P~~~--dq~~---na~~~~-----------~~~g~g~~~~~~~~~ 68 (129)
.+++.+++-++-++.. ..+++||+++|+|+|+....+ |... |...+. -. ++|..++
T Consensus 205 ~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~-~~G~~v~----- 278 (331)
T PHA01630 205 SLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPI-HVGYFLD----- 278 (331)
T ss_pred HHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCc-ccccccC-----
Confidence 3578888833223322 468999999999999976432 2211 111000 01 3455442
Q ss_pred CccHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 035557 69 IVRREAIAHCIREILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSI 124 (129)
Q Consensus 69 ~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 124 (129)
.+.+++.+.+.+++.+..-++++++...-+....+. -+-....+.+.+-+.
T Consensus 279 -~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~----fs~~~ia~k~~~l~~ 329 (331)
T PHA01630 279 -PDIEDAYQKLLEALANWTPEKKKENLEGRAILYREN----YSYNAIAKMWEKILE 329 (331)
T ss_pred -CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHh
Confidence 356777777778777521124554444433333332 555555566665554
No 98
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=96.25 E-value=0.0091 Score=45.52 Aligned_cols=75 Identities=21% Similarity=0.279 Sum_probs=47.6
Q ss_pred HHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhC
Q 035557 6 LEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEG 85 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 85 (129)
..+|.++++ +|+-+| |-.-|+.++|+|.|.+= |+...-. .... |..+.+ ..++++|.+++++++.+
T Consensus 253 l~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~iR---~~geRqe-~r~~-~~nvlv------~~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 253 LSLLKNADL--VVGDSS-GIQEEAPSLGKPVVNIR---DSGERQE-GRER-GSNVLV------GTDPEAIIQAIEKALSD 318 (346)
T ss_dssp HHHHHHESE--EEESSH-HHHHHGGGGT--EEECS---SS-S-HH-HHHT-TSEEEE------TSSHHHHHHHHHHHHH-
T ss_pred HHHHhcceE--EEEcCc-cHHHHHHHhCCeEEEec---CCCCCHH-HHhh-cceEEe------CCCHHHHHHHHHHHHhC
Confidence 467889999 999999 44449999999999992 2111111 1222 444444 46899999999999977
Q ss_pred hhhHHHHHHHHH
Q 035557 86 ERCKEIRQNAGK 97 (129)
Q Consensus 86 ~~~~~~~~~a~~ 97 (129)
. ....++..
T Consensus 319 ~---~~~~~~~~ 327 (346)
T PF02350_consen 319 K---DFYRKLKN 327 (346)
T ss_dssp H---HHHHHHHC
T ss_pred h---HHHHhhcc
Confidence 4 44444443
No 99
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.25 E-value=0.005 Score=39.74 Aligned_cols=68 Identities=28% Similarity=0.337 Sum_probs=41.3
Q ss_pred HHhhcccCCcceecCC--C-hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHH
Q 035557 6 LEVLAHEATGCFLTHC--G-WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREI 82 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hg--G-~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~ 82 (129)
..+++.+++..+.+.. | .+++.|++++|+|+|+.+.. ........ +.|..+ . -+++++.+++.++
T Consensus 65 ~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~~~-~~~~~~-~-----~~~~~l~~~i~~l 132 (135)
T PF13692_consen 65 PEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVEED-GCGVLV-A-----NDPEELAEAIERL 132 (135)
T ss_dssp HHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE--T-----T-HHHHHHHHHHH
T ss_pred HHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhheeec-CCeEEE-C-----CCHHHHHHHHHHH
Confidence 4567888886555432 2 48999999999999998751 12233334 677666 3 3889999999998
Q ss_pred HhC
Q 035557 83 LEG 85 (129)
Q Consensus 83 l~~ 85 (129)
++|
T Consensus 133 ~~d 135 (135)
T PF13692_consen 133 LND 135 (135)
T ss_dssp HH-
T ss_pred hcC
Confidence 865
No 100
>PLN02275 transferase, transferring glycosyl groups
Probab=96.13 E-value=0.016 Score=44.25 Aligned_cols=68 Identities=22% Similarity=0.294 Sum_probs=47.7
Q ss_pred CCChHHh---hcccCCcceec----CCC---hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCcc
Q 035557 2 WCPQLEV---LAHEATGCFLT----HCG---WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVR 71 (129)
Q Consensus 2 w~pq~~i---L~~~~~~~~I~----hgG---~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~ 71 (129)
|+|+.++ |+.+|+ |+. ..| .++++|++++|+|+|+... ..+...+.+. +.|..++ +
T Consensus 294 ~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~g-~~G~lv~-------~ 359 (371)
T PLN02275 294 WLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKDG-KNGLLFS-------S 359 (371)
T ss_pred CCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccCC-CCeEEEC-------C
Confidence 5676544 899999 663 112 3579999999999999753 2255566666 6888873 3
Q ss_pred HHHHHHHHHHHH
Q 035557 72 REAIAHCIREIL 83 (129)
Q Consensus 72 ~~~l~~~i~~~l 83 (129)
++++.++|.+++
T Consensus 360 ~~~la~~i~~l~ 371 (371)
T PLN02275 360 SSELADQLLELL 371 (371)
T ss_pred HHHHHHHHHHhC
Confidence 678888887764
No 101
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=96.11 E-value=0.097 Score=39.61 Aligned_cols=66 Identities=23% Similarity=0.116 Sum_probs=45.1
Q ss_pred HhhcccCCcceecCCC----hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHH
Q 035557 7 EVLAHEATGCFLTHCG----WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREI 82 (129)
Q Consensus 7 ~iL~~~~~~~~I~hgG----~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~ 82 (129)
.+++.+++ |+..+- ..+++||+++|+|+|+.+..+ ....+.+. ..|..++ +.+.+..++.++
T Consensus 269 ~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~~-~~g~~~~-------~~~~~a~~i~~l 334 (372)
T cd03792 269 ALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIEDG-ETGFLVD-------TVEEAAVRILYL 334 (372)
T ss_pred HHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhcccC-CceEEeC-------CcHHHHHHHHHH
Confidence 56788888 775442 359999999999999875432 22344444 5566553 345677789899
Q ss_pred HhCh
Q 035557 83 LEGE 86 (129)
Q Consensus 83 l~~~ 86 (129)
+.++
T Consensus 335 l~~~ 338 (372)
T cd03792 335 LRDP 338 (372)
T ss_pred HcCH
Confidence 8876
No 102
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=96.07 E-value=0.067 Score=42.38 Aligned_cols=97 Identities=12% Similarity=0.093 Sum_probs=65.1
Q ss_pred HhhcccCCcceecCC---Ch-hhHHHHHHcCCC----eecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHH
Q 035557 7 EVLAHEATGCFLTHC---GW-NSTMEARSLGVP----MVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHC 78 (129)
Q Consensus 7 ~iL~~~~~~~~I~hg---G~-~s~~eal~~gvP----~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~ 78 (129)
.+++.+++ |+.-+ |. .++.|++++|+| +|+--..+- +. .. +-|..++. .+.+.+.++
T Consensus 351 aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~~---~l-~~gllVnP-----~d~~~lA~a 415 (456)
T TIGR02400 351 ALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA----AQ---EL-NGALLVNP-----YDIDGMADA 415 (456)
T ss_pred HHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCC----hH---Hh-CCcEEECC-----CCHHHHHHH
Confidence 34688888 76533 54 688899999999 555433221 11 12 34777754 478999999
Q ss_pred HHHHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 035557 79 IREILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSI 124 (129)
Q Consensus 79 i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 124 (129)
|.++++.+. ++.+++..++.+.... .+...-++.|++.|.
T Consensus 416 I~~aL~~~~-~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 416 IARALTMPL-EEREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred HHHHHcCCH-HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 999997542 2556666666666555 677777888887764
No 103
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=96.01 E-value=0.066 Score=41.39 Aligned_cols=102 Identities=26% Similarity=0.263 Sum_probs=59.4
Q ss_pred HHhhcccCCcceecCCChhhHHHHHHcCCCeeccc-ccccchhhHHHHHHH--hcc-----cceecCC-CCCCccHHHHH
Q 035557 6 LEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMP-QWTDQSTNSKCVMDV--WKT-----GLKVPAD-DKGIVRREAIA 76 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P-~~~dq~~na~~~~~~--~g~-----g~~~~~~-~~~~~~~~~l~ 76 (129)
.+++..+++ .+.-+| ..++|+...|+|||++= ...=...-++++.+. .++ |..+-++ =.+..+++.+.
T Consensus 255 ~~~m~~ad~--al~~SG-TaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~ 331 (373)
T PF02684_consen 255 YDAMAAADA--ALAASG-TATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIA 331 (373)
T ss_pred HHHHHhCcc--hhhcCC-HHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHH
Confidence 456778887 666666 56789999999999982 211122334444332 011 1111111 01278999999
Q ss_pred HHHHHHHhChhhHHHHHHHHHHHHHHHHHhhcCCChH
Q 035557 77 HCIREILEGERCKEIRQNAGKWSNFAKEAVTKGGSSD 113 (129)
Q Consensus 77 ~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~ 113 (129)
+.+..++.|. +.++......+.+.+....+.++.
T Consensus 332 ~~~~~ll~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 365 (373)
T PF02684_consen 332 AELLELLENP---EKRKKQKELFREIRQLLGPGASSR 365 (373)
T ss_pred HHHHHHhcCH---HHHHHHHHHHHHHHHhhhhccCCH
Confidence 9999999887 444444444444444444455543
No 104
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=95.97 E-value=0.015 Score=44.83 Aligned_cols=101 Identities=22% Similarity=0.287 Sum_probs=70.9
Q ss_pred CCChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHH
Q 035557 2 WCPQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIRE 81 (129)
Q Consensus 2 w~pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ 81 (129)
+.+...++.++.+ ++|-+| |-.-||-..|+|.+++=...+++. ..+. |.-+.+ ..+.+.+.+++.+
T Consensus 272 ~~~f~~L~~~a~~--iltDSG-giqEEAp~lg~Pvl~lR~~TERPE----~v~a-gt~~lv------g~~~~~i~~~~~~ 337 (383)
T COG0381 272 YLDFHNLMKNAFL--ILTDSG-GIQEEAPSLGKPVLVLRDTTERPE----GVEA-GTNILV------GTDEENILDAATE 337 (383)
T ss_pred hHHHHHHHHhceE--EEecCC-chhhhHHhcCCcEEeeccCCCCcc----ceec-CceEEe------CccHHHHHHHHHH
Confidence 4456677888877 888877 556799999999999977777765 2333 444445 4577999999999
Q ss_pred HHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 035557 82 ILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANS 123 (129)
Q Consensus 82 ~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 123 (129)
+++++ +..+++.....-+-+ |.++.+.++.+....
T Consensus 338 ll~~~---~~~~~m~~~~npYgd----g~as~rIv~~l~~~~ 372 (383)
T COG0381 338 LLEDE---EFYERMSNAKNPYGD----GNASERIVEILLNYF 372 (383)
T ss_pred HhhCh---HHHHHHhcccCCCcC----cchHHHHHHHHHHHh
Confidence 99987 777777766655544 345555555554443
No 105
>PHA01633 putative glycosyl transferase group 1
Probab=95.90 E-value=0.059 Score=41.07 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=47.6
Q ss_pred HHhhcccCCcceecCC---C-hhhHHHHHHcCCCeecccc------cccc------hhhHHHHH--HHhcccceecCCCC
Q 035557 6 LEVLAHEATGCFLTHC---G-WNSTMEARSLGVPMVAMPQ------WTDQ------STNSKCVM--DVWKTGLKVPADDK 67 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hg---G-~~s~~eal~~gvP~i~~P~------~~dq------~~na~~~~--~~~g~g~~~~~~~~ 67 (129)
..+++.+++ |+.-+ | ..+++||+++|+|+|+--. .+++ ..+...+. +. |.|..++
T Consensus 218 ~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~-g~g~~~~---- 290 (335)
T PHA01633 218 FAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEH-GQKWKIH---- 290 (335)
T ss_pred HHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCccc-Cceeeec----
Confidence 356788888 77543 3 4689999999999998633 1222 22333333 23 5565654
Q ss_pred CCccHHHHHHHHHHHHhC
Q 035557 68 GIVRREAIAHCIREILEG 85 (129)
Q Consensus 68 ~~~~~~~l~~~i~~~l~~ 85 (129)
..+++++.+++.+++..
T Consensus 291 -~~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 291 -KFQIEDMANAIILAFEL 307 (335)
T ss_pred -CCCHHHHHHHHHHHHhc
Confidence 46999999999998654
No 106
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=95.88 E-value=0.14 Score=39.28 Aligned_cols=71 Identities=20% Similarity=0.154 Sum_probs=45.9
Q ss_pred CCCh---HHhhcccCCcceecCC---Ch-hhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHH
Q 035557 2 WCPQ---LEVLAHEATGCFLTHC---GW-NSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREA 74 (129)
Q Consensus 2 w~pq---~~iL~~~~~~~~I~hg---G~-~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~ 74 (129)
|+|+ ..+++.+++ +|.-. |. .+++||+++|+|+|+-+..+ ....+. . +.+... ..+.++
T Consensus 257 ~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~-~-~~~~~~------~~~~~~ 322 (398)
T cd03796 257 AVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLP-P-DMILLA------EPDVES 322 (398)
T ss_pred CCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhee-C-Cceeec------CCCHHH
Confidence 4554 446788888 65432 32 59999999999999976532 222332 2 333222 226789
Q ss_pred HHHHHHHHHhCh
Q 035557 75 IAHCIREILEGE 86 (129)
Q Consensus 75 l~~~i~~~l~~~ 86 (129)
+.+++.+++.+.
T Consensus 323 l~~~l~~~l~~~ 334 (398)
T cd03796 323 IVRKLEEAISIL 334 (398)
T ss_pred HHHHHHHHHhCh
Confidence 999999998754
No 107
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=95.84 E-value=0.1 Score=45.31 Aligned_cols=71 Identities=27% Similarity=0.318 Sum_probs=48.1
Q ss_pred eecCC---C-hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhChhh-HHH
Q 035557 17 FLTHC---G-WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEGERC-KEI 91 (129)
Q Consensus 17 ~I~hg---G-~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~-~~~ 91 (129)
||.-+ | ..+++||+++|+|+|+-...+ ....+... ..|..++.. +++.+.++|.+++.+++. +++
T Consensus 575 FV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g-~nGlLVdP~-----D~eaLA~AL~~LL~Dpelr~~m 644 (1050)
T TIGR02468 575 FINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVL-DNGLLVDPH-----DQQAIADALLKLVADKQLWAEC 644 (1050)
T ss_pred eeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccC-CcEEEECCC-----CHHHHHHHHHHHhhCHHHHHHH
Confidence 76643 2 378999999999999986432 22333344 568888643 788999999999988732 344
Q ss_pred HHHHHH
Q 035557 92 RQNAGK 97 (129)
Q Consensus 92 ~~~a~~ 97 (129)
.+++.+
T Consensus 645 ~~~gr~ 650 (1050)
T TIGR02468 645 RQNGLK 650 (1050)
T ss_pred HHHHHH
Confidence 444443
No 108
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=95.61 E-value=0.16 Score=41.60 Aligned_cols=92 Identities=14% Similarity=0.227 Sum_probs=53.1
Q ss_pred HHhhcccCCcceecCCChhhHHHHHHcCCCeeccc-ccccchhhHHHHHHH----hc-----ccceecCC--C-CCCccH
Q 035557 6 LEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMP-QWTDQSTNSKCVMDV----WK-----TGLKVPAD--D-KGIVRR 72 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P-~~~dq~~na~~~~~~----~g-----~g~~~~~~--~-~~~~~~ 72 (129)
.++++.|++ .+.-+| ..++|+...|+||+++= ...=...-++++.+. .+ +|..+-++ + ..+.++
T Consensus 483 ~~~m~aaD~--aLaaSG-TaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tp 559 (608)
T PRK01021 483 YELMRECDC--ALAKCG-TIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQP 559 (608)
T ss_pred HHHHHhcCe--eeecCC-HHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCH
Confidence 567888888 777777 45679999999999972 111112234454440 01 22222111 1 127899
Q ss_pred HHHHHHHHHHHhChh-hHHHHHHHHHHHHH
Q 035557 73 EAIAHCIREILEGER-CKEIRQNAGKWSNF 101 (129)
Q Consensus 73 ~~l~~~i~~~l~~~~-~~~~~~~a~~l~~~ 101 (129)
+++.+++ +++.|+. .+++++...++++.
T Consensus 560 e~La~~l-~lL~d~~~r~~~~~~l~~lr~~ 588 (608)
T PRK01021 560 EEVAAAL-DILKTSQSKEKQKDACRDLYQA 588 (608)
T ss_pred HHHHHHH-HHhcCHHHHHHHHHHHHHHHHH
Confidence 9999997 7777762 13344444444443
No 109
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=95.57 E-value=0.17 Score=37.46 Aligned_cols=69 Identities=20% Similarity=0.188 Sum_probs=41.7
Q ss_pred CCChH---HhhcccCCcceecCCC-----hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHH
Q 035557 2 WCPQL---EVLAHEATGCFLTHCG-----WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRRE 73 (129)
Q Consensus 2 w~pq~---~iL~~~~~~~~I~hgG-----~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~ 73 (129)
|+|+. ..+..+++ ++.+.- ..+++||+++|+|+|+....+. ...+.+ .|..+... +
T Consensus 255 ~~~~~~~~~~~~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~----~e~~~~---~g~~~~~~-----~-- 318 (363)
T cd04955 255 PIYDQELLELLRYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFN----REVLGD---KAIYFKVG-----D-- 318 (363)
T ss_pred ccChHHHHHHHHhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCcc----ceeecC---CeeEecCc-----h--
Confidence 45554 45666777 544332 2579999999999998754321 111111 23334322 1
Q ss_pred HHHHHHHHHHhCh
Q 035557 74 AIAHCIREILEGE 86 (129)
Q Consensus 74 ~l~~~i~~~l~~~ 86 (129)
.+.+++.++++++
T Consensus 319 ~l~~~i~~l~~~~ 331 (363)
T cd04955 319 DLASLLEELEADP 331 (363)
T ss_pred HHHHHHHHHHhCH
Confidence 2999999999876
No 110
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=95.27 E-value=0.11 Score=40.65 Aligned_cols=70 Identities=17% Similarity=0.100 Sum_probs=45.9
Q ss_pred HhhcccCCcceecCC----ChhhHHHHHHcCCCeecccccc--cchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHH
Q 035557 7 EVLAHEATGCFLTHC----GWNSTMEARSLGVPMVAMPQWT--DQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIR 80 (129)
Q Consensus 7 ~iL~~~~~~~~I~hg----G~~s~~eal~~gvP~i~~P~~~--dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~ 80 (129)
.+++.+++ ++.-. -..+.+||+++|+|.|+....+ |...+.....+. |.|..++.. +++++.+++.
T Consensus 366 ~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~~-----~~~~l~~~i~ 437 (476)
T cd03791 366 LIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEGY-----NADALLAALR 437 (476)
T ss_pred HHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCCC-----CHHHHHHHHH
Confidence 46778888 66432 2357899999999999875532 222111111133 578888643 6899999999
Q ss_pred HHHh
Q 035557 81 EILE 84 (129)
Q Consensus 81 ~~l~ 84 (129)
+++.
T Consensus 438 ~~l~ 441 (476)
T cd03791 438 RALA 441 (476)
T ss_pred HHHH
Confidence 9875
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.20 E-value=0.21 Score=41.71 Aligned_cols=82 Identities=28% Similarity=0.286 Sum_probs=53.1
Q ss_pred HHhhcccCCcceec---CCC-hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHH
Q 035557 6 LEVLAHEATGCFLT---HCG-WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIRE 81 (129)
Q Consensus 6 ~~iL~~~~~~~~I~---hgG-~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ 81 (129)
..+|+.+++ ||. +-| .++++|++++|+|+|+.... -....+.+- ..|..++.. +.+++++.+++.+
T Consensus 586 ~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg-~~GlLv~~~---d~~~~~La~aL~~ 655 (694)
T PRK15179 586 GYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEG-VTGLTLPAD---TVTAPDVAEALAR 655 (694)
T ss_pred HHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCC-CCEEEeCCC---CCChHHHHHHHHH
Confidence 456788888 554 233 47899999999999997642 234445555 578888765 5566677777777
Q ss_pred HHhChhh-HHHHHHHHH
Q 035557 82 ILEGERC-KEIRQNAGK 97 (129)
Q Consensus 82 ~l~~~~~-~~~~~~a~~ 97 (129)
++.+... ..+++++++
T Consensus 656 ll~~l~~~~~l~~~ar~ 672 (694)
T PRK15179 656 IHDMCAADPGIARKAAD 672 (694)
T ss_pred HHhChhccHHHHHHHHH
Confidence 6643211 256555544
No 112
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.14 E-value=0.36 Score=39.38 Aligned_cols=53 Identities=23% Similarity=0.406 Sum_probs=38.1
Q ss_pred HHhhcccCCcceecC---CC-hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCC
Q 035557 6 LEVLAHEATGCFLTH---CG-WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPAD 65 (129)
Q Consensus 6 ~~iL~~~~~~~~I~h---gG-~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~ 65 (129)
..+|+.+++ ||.. -| .++++||+++|+|+|+... .-+...+.+. ..|..++..
T Consensus 467 ~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG-~nG~LVp~~ 523 (578)
T PRK15490 467 GYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEG-VSGFILDDA 523 (578)
T ss_pred HHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccC-CcEEEECCC
Confidence 356888898 7753 23 4799999999999998754 2345566666 678888654
No 113
>PLN02949 transferase, transferring glycosyl groups
Probab=94.82 E-value=0.13 Score=40.91 Aligned_cols=80 Identities=24% Similarity=0.142 Sum_probs=47.0
Q ss_pred HhhcccCCcceecC---CC-hhhHHHHHHcCCCeecccccc---cchhhHHHHHHHhcccceecCCCCCCccHHHHHHHH
Q 035557 7 EVLAHEATGCFLTH---CG-WNSTMEARSLGVPMVAMPQWT---DQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCI 79 (129)
Q Consensus 7 ~iL~~~~~~~~I~h---gG-~~s~~eal~~gvP~i~~P~~~---dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i 79 (129)
.+|+.+++ ++.- =| ..++.||+++|+|.|+....+ |...+.. .. ..|... .+.+++.++|
T Consensus 350 ~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~---~g-~tG~l~-------~~~~~la~ai 416 (463)
T PLN02949 350 RLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDED---GQ-QTGFLA-------TTVEEYADAI 416 (463)
T ss_pred HHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecCC---CC-cccccC-------CCHHHHHHHH
Confidence 45777877 6532 22 358999999999999986432 1111000 00 123222 2688999999
Q ss_pred HHHHhC-hh-hHHHHHHHHHHH
Q 035557 80 REILEG-ER-CKEIRQNAGKWS 99 (129)
Q Consensus 80 ~~~l~~-~~-~~~~~~~a~~l~ 99 (129)
.+++.+ ++ .+++.+++++..
T Consensus 417 ~~ll~~~~~~r~~m~~~ar~~~ 438 (463)
T PLN02949 417 LEVLRMRETERLEIAAAARKRA 438 (463)
T ss_pred HHHHhCCHHHHHHHHHHHHHHH
Confidence 999974 32 234555555443
No 114
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=94.55 E-value=0.27 Score=38.71 Aligned_cols=70 Identities=13% Similarity=0.055 Sum_probs=45.5
Q ss_pred HhhcccCCcceecCC---C-hhhHHHHHHcCCCeecccccc--cchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHH
Q 035557 7 EVLAHEATGCFLTHC---G-WNSTMEARSLGVPMVAMPQWT--DQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIR 80 (129)
Q Consensus 7 ~iL~~~~~~~~I~hg---G-~~s~~eal~~gvP~i~~P~~~--dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~ 80 (129)
.+++.+++ ++.-. | ..+.+||+++|+|.|+-...+ |...+...-... +.|..++. .+++++.++|.
T Consensus 361 ~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~-~~G~l~~~-----~d~~~la~~i~ 432 (473)
T TIGR02095 361 LIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAES-GTGFLFEE-----YDPGALLAALS 432 (473)
T ss_pred HHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCC-CceEEeCC-----CCHHHHHHHHH
Confidence 46788888 66432 2 258899999999999875432 222111000122 56777754 37889999999
Q ss_pred HHHh
Q 035557 81 EILE 84 (129)
Q Consensus 81 ~~l~ 84 (129)
+++.
T Consensus 433 ~~l~ 436 (473)
T TIGR02095 433 RALR 436 (473)
T ss_pred HHHH
Confidence 9886
No 115
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=94.49 E-value=0.46 Score=40.31 Aligned_cols=99 Identities=16% Similarity=0.194 Sum_probs=62.0
Q ss_pred HhhcccCCcceecCC---Ch-hhHHHHHHcCCC---eecccccccchhhHHHHHHHhc-ccceecCCCCCCccHHHHHHH
Q 035557 7 EVLAHEATGCFLTHC---GW-NSTMEARSLGVP---MVAMPQWTDQSTNSKCVMDVWK-TGLKVPADDKGIVRREAIAHC 78 (129)
Q Consensus 7 ~iL~~~~~~~~I~hg---G~-~s~~eal~~gvP---~i~~P~~~dq~~na~~~~~~~g-~g~~~~~~~~~~~~~~~l~~~ 78 (129)
.+++.+++ |+.-+ |. .+.+|++++|+| +++++-+ --.+.. . | .|+.++. .+.+.+.++
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~---~G~~~~---l-~~~allVnP-----~D~~~lA~A 436 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEF---AGAGQS---L-GAGALLVNP-----WNITEVSSA 436 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCC---cCchhh---h-cCCeEEECC-----CCHHHHHHH
Confidence 56788888 77543 65 477799999999 3344321 112221 2 4 5777764 488999999
Q ss_pred HHHHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhh
Q 035557 79 IREILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSIS 125 (129)
Q Consensus 79 i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 125 (129)
|.++++.+. ++.+++..++.+.... .+...-.+.|++.+..
T Consensus 437 I~~aL~m~~-~er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~~ 477 (797)
T PLN03063 437 IKEALNMSD-EERETRHRHNFQYVKT-----HSAQKWADDFMSELND 477 (797)
T ss_pred HHHHHhCCH-HHHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHHH
Confidence 999998321 2444555556655554 4555666666666543
No 116
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.44 E-value=0.095 Score=43.22 Aligned_cols=59 Identities=24% Similarity=0.295 Sum_probs=38.8
Q ss_pred CChhhHHHHHHcCCCeecccccccchh-hHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhCh
Q 035557 21 CGWNSTMEARSLGVPMVAMPQWTDQST-NSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEGE 86 (129)
Q Consensus 21 gG~~s~~eal~~gvP~i~~P~~~dq~~-na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 86 (129)
.|..|.++.++.|||||.+|...--.. -+..+... |+|..+.. +.++..+.--++-.|.
T Consensus 846 nGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~-Gl~hliak------~~eEY~~iaV~Latd~ 905 (966)
T KOG4626|consen 846 NGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTAL-GLGHLIAK------NREEYVQIAVRLATDK 905 (966)
T ss_pred CCcccchhhhccCCceeecccHHHHHHHHHHHHHHc-ccHHHHhh------hHHHHHHHHHHhhcCH
Confidence 378899999999999999997543333 44456666 99987742 4444444333444443
No 117
>PRK10125 putative glycosyl transferase; Provisional
Probab=94.34 E-value=0.46 Score=36.95 Aligned_cols=61 Identities=20% Similarity=0.204 Sum_probs=40.9
Q ss_pred HHhhcccCCcceecCCC----hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHH
Q 035557 6 LEVLAHEATGCFLTHCG----WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCI 79 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hgG----~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i 79 (129)
..+++.+++ ||.-+- ..+++||+++|+|+|+....+ ..+ +.+. +.|..++.. +.+++.+.+
T Consensus 301 ~~~y~~aDv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~E-iv~~-~~G~lv~~~-----d~~~La~~~ 365 (405)
T PRK10125 301 MSALNQMDA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA----ARE-VLQK-SGGKTVSEE-----EVLQLAQLS 365 (405)
T ss_pred HHHHHhCCE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHH-hEeC-CcEEEECCC-----CHHHHHhcc
Confidence 345677888 776443 378999999999999997644 112 2333 568888654 667777643
No 118
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.31 E-value=0.35 Score=36.72 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=40.2
Q ss_pred HHHHcCCCeecccccccchh--hHHHHHHHhcccceecCCCCCCccHHHHHHHHH-HHHhChhhHHHHHHHH
Q 035557 28 EARSLGVPMVAMPQWTDQST--NSKCVMDVWKTGLKVPADDKGIVRREAIAHCIR-EILEGERCKEIRQNAG 96 (129)
Q Consensus 28 eal~~gvP~i~~P~~~dq~~--na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~-~~l~~~~~~~~~~~a~ 96 (129)
.++-.|+|+|.+|-.+-|+. .|.+-..++|+...+... . .+..+.+. +++.|+ .+.+.++
T Consensus 325 QavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~-----~-aq~a~~~~q~ll~dp---~r~~air 387 (412)
T COG4370 325 QAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP-----E-AQAAAQAVQELLGDP---QRLTAIR 387 (412)
T ss_pred HhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC-----c-hhhHHHHHHHHhcCh---HHHHHHH
Confidence 34556999999999999965 677777776777666432 2 33344444 488888 5555554
No 119
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=94.29 E-value=0.87 Score=34.71 Aligned_cols=66 Identities=18% Similarity=0.084 Sum_probs=41.1
Q ss_pred HhhcccCCcceec------CCC-hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHH
Q 035557 7 EVLAHEATGCFLT------HCG-WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCI 79 (129)
Q Consensus 7 ~iL~~~~~~~~I~------hgG-~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i 79 (129)
..++++++..+-. .++ -+.++|++++|+|+|+.++ ....... + +..+.. -+.+++.++|
T Consensus 269 ~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~-~-~~~~~~-----~d~~~~~~ai 334 (373)
T cd04950 269 AYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYE-D-EVVLIA-----DDPEEFVAAI 334 (373)
T ss_pred HHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhc-C-cEEEeC-----CCHHHHHHHH
Confidence 3567888833221 222 2468999999999998763 1222222 3 333322 2789999999
Q ss_pred HHHHhCh
Q 035557 80 REILEGE 86 (129)
Q Consensus 80 ~~~l~~~ 86 (129)
.+++.++
T Consensus 335 ~~~l~~~ 341 (373)
T cd04950 335 EKALLED 341 (373)
T ss_pred HHHHhcC
Confidence 9977543
No 120
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=93.90 E-value=0.48 Score=34.68 Aligned_cols=72 Identities=21% Similarity=0.111 Sum_probs=45.8
Q ss_pred CCChH---HhhcccCCcceecC--CC-hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHH
Q 035557 2 WCPQL---EVLAHEATGCFLTH--CG-WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAI 75 (129)
Q Consensus 2 w~pq~---~iL~~~~~~~~I~h--gG-~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l 75 (129)
++|+. .+++.+++-++-+. -| ..+++||+++|+|+|+.... -....+.+. ..|..++ . .+++
T Consensus 231 ~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~~~-~~g~l~~-----~--~~~l 298 (335)
T cd03802 231 EVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVEDG-VTGFLVD-----S--VEEL 298 (335)
T ss_pred CCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----CchhheeCC-CcEEEeC-----C--HHHH
Confidence 45553 45788888333232 23 36899999999999987642 222333333 3566662 2 7889
Q ss_pred HHHHHHHHhC
Q 035557 76 AHCIREILEG 85 (129)
Q Consensus 76 ~~~i~~~l~~ 85 (129)
.+++.++...
T Consensus 299 ~~~l~~l~~~ 308 (335)
T cd03802 299 AAAVARADRL 308 (335)
T ss_pred HHHHHHHhcc
Confidence 9999888654
No 121
>PRK14098 glycogen synthase; Provisional
Probab=93.82 E-value=0.44 Score=38.04 Aligned_cols=68 Identities=21% Similarity=0.062 Sum_probs=44.8
Q ss_pred HHhhcccCCcceecCCC----hhhHHHHHHcCCCeecccccc--cchhhHHHHHHHhcccceecCCCCCCccHHHHHHHH
Q 035557 6 LEVLAHEATGCFLTHCG----WNSTMEARSLGVPMVAMPQWT--DQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCI 79 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hgG----~~s~~eal~~gvP~i~~P~~~--dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i 79 (129)
..+++.+++ |+..+= ..+.+||+++|+|.|+....+ |...+ ...+. +.|..++. .+++++.++|
T Consensus 376 ~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~-~~G~l~~~-----~d~~~la~ai 445 (489)
T PRK14098 376 HLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDK-GSGFIFHD-----YTPEALVAKL 445 (489)
T ss_pred HHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCCC-CceeEeCC-----CCHHHHHHHH
Confidence 357788898 665432 257899999999888875432 22111 01123 56777754 4789999999
Q ss_pred HHHH
Q 035557 80 REIL 83 (129)
Q Consensus 80 ~~~l 83 (129)
.+++
T Consensus 446 ~~~l 449 (489)
T PRK14098 446 GEAL 449 (489)
T ss_pred HHHH
Confidence 9876
No 122
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=93.64 E-value=0.32 Score=38.46 Aligned_cols=82 Identities=9% Similarity=0.105 Sum_probs=57.5
Q ss_pred HHhhcccCCcceecCCC--hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHH
Q 035557 6 LEVLAHEATGCFLTHCG--WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREIL 83 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hgG--~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l 83 (129)
..++..|++.+-|+|+. ..++.||+.+|+|++..=.... +...+.+ |..+..+ +.+++.++|.+++
T Consensus 342 ~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~---~~~~i~~----g~l~~~~-----~~~~m~~~i~~lL 409 (438)
T TIGR02919 342 QELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAH---NRDFIAS----ENIFEHN-----EVDQLISKLKDLL 409 (438)
T ss_pred HHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccC---CcccccC----CceecCC-----CHHHHHHHHHHHh
Confidence 57889999988999987 4799999999999998843211 1122221 5556543 6899999999999
Q ss_pred hChhhHHHHHHHHHHHHH
Q 035557 84 EGERCKEIRQNAGKWSNF 101 (129)
Q Consensus 84 ~~~~~~~~~~~a~~l~~~ 101 (129)
.++ +.+++...+-++.
T Consensus 410 ~d~--~~~~~~~~~q~~~ 425 (438)
T TIGR02919 410 NDP--NQFRELLEQQREH 425 (438)
T ss_pred cCH--HHHHHHHHHHHHH
Confidence 887 2455555554443
No 123
>PRK00654 glgA glycogen synthase; Provisional
Probab=93.56 E-value=0.53 Score=37.14 Aligned_cols=70 Identities=17% Similarity=0.128 Sum_probs=45.9
Q ss_pred HhhcccCCcceecCC---C-hhhHHHHHHcCCCeecccccc--cchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHH
Q 035557 7 EVLAHEATGCFLTHC---G-WNSTMEARSLGVPMVAMPQWT--DQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIR 80 (129)
Q Consensus 7 ~iL~~~~~~~~I~hg---G-~~s~~eal~~gvP~i~~P~~~--dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~ 80 (129)
.+++.+++ |+.-+ | ..+.+||+++|+|.|+....+ |...+.....+. +.|..++. -+++++.+++.
T Consensus 352 ~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~-----~d~~~la~~i~ 423 (466)
T PRK00654 352 RIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDD-----FNAEDLLRALR 423 (466)
T ss_pred HHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCC-----CCHHHHHHHHH
Confidence 56788888 66542 2 358999999999999875422 222111111233 56877764 37889999999
Q ss_pred HHHh
Q 035557 81 EILE 84 (129)
Q Consensus 81 ~~l~ 84 (129)
+++.
T Consensus 424 ~~l~ 427 (466)
T PRK00654 424 RALE 427 (466)
T ss_pred HHHH
Confidence 9875
No 124
>PLN00142 sucrose synthase
Probab=93.22 E-value=1.1 Score=38.24 Aligned_cols=51 Identities=20% Similarity=0.256 Sum_probs=36.2
Q ss_pred hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHH
Q 035557 23 WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREIL 83 (129)
Q Consensus 23 ~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l 83 (129)
..+++||+++|+|+|+-... -....+.+- ..|..++.. +++++.++|.+++
T Consensus 680 GLvvLEAMA~GlPVVATdvG----G~~EIV~dG-~tG~LV~P~-----D~eaLA~aI~~lL 730 (815)
T PLN00142 680 GLTVVEAMTCGLPTFATCQG----GPAEIIVDG-VSGFHIDPY-----HGDEAANKIADFF 730 (815)
T ss_pred CHHHHHHHHcCCCEEEcCCC----CHHHHhcCC-CcEEEeCCC-----CHHHHHHHHHHHH
Confidence 36899999999999986543 244455555 578888654 6777888876654
No 125
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=92.95 E-value=0.34 Score=36.88 Aligned_cols=105 Identities=14% Similarity=0.163 Sum_probs=60.5
Q ss_pred ChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCC--CCccHHHHHHHHHH
Q 035557 4 PQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDK--GIVRREAIAHCIRE 81 (129)
Q Consensus 4 pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~--~~~~~~~l~~~i~~ 81 (129)
+-.++|..+++ .||-- .+.+.|.+..++|+|......|...+. . |.-.-....-. -..+.++|.++|+.
T Consensus 262 ~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~-----r-g~~~~~~~~~pg~~~~~~~eL~~~i~~ 332 (369)
T PF04464_consen 262 DIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKE-----R-GFYFDYEEDLPGPIVYNFEELIEAIEN 332 (369)
T ss_dssp -HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTT-----S-SBSS-TTTSSSS-EESSHHHHHHHHTT
T ss_pred CHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhc-----c-CCCCchHhhCCCceeCCHHHHHHHHHh
Confidence 35678999999 99987 468889999999999887666655332 1 22211111100 02467899999998
Q ss_pred HHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 035557 82 ILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFV 120 (129)
Q Consensus 82 ~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 120 (129)
+++++ ..++++.++..+.+.. -.+|.++.+.++.++
T Consensus 333 ~~~~~--~~~~~~~~~~~~~~~~-~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 333 IIENP--DEYKEKREKFRDKFFK-YNDGNSSERIVNYIF 368 (369)
T ss_dssp HHHHH--HHTHHHHHHHHHHHST-T--S-HHHHHHHHHH
T ss_pred hhhCC--HHHHHHHHHHHHHhCC-CCCchHHHHHHHHHh
Confidence 88665 2455555666666544 345666666666554
No 126
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=92.85 E-value=0.58 Score=37.03 Aligned_cols=96 Identities=13% Similarity=0.101 Sum_probs=57.9
Q ss_pred HhhcccCCcceec---CCCh-hhHHHHHHcCCC----eecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHH
Q 035557 7 EVLAHEATGCFLT---HCGW-NSTMEARSLGVP----MVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHC 78 (129)
Q Consensus 7 ~iL~~~~~~~~I~---hgG~-~s~~eal~~gvP----~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~ 78 (129)
.+++.+++ ||. +-|. .+++|++++|+| +|+--..+- + ... .-|..++. .+.+++.++
T Consensus 356 ~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~----~---~~~-~~g~lv~p-----~d~~~la~a 420 (460)
T cd03788 356 ALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGA----A---EEL-SGALLVNP-----YDIDEVADA 420 (460)
T ss_pred HHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccc----h---hhc-CCCEEECC-----CCHHHHHHH
Confidence 34788888 663 2343 577899999999 444322111 0 002 44677754 378999999
Q ss_pred HHHHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 035557 79 IREILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANS 123 (129)
Q Consensus 79 i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 123 (129)
|.+++.++. ++.+.+..+.++.... -+...-+..++++|
T Consensus 421 i~~~l~~~~-~e~~~~~~~~~~~v~~-----~~~~~w~~~~l~~l 459 (460)
T cd03788 421 IHRALTMPL-EERRERHRKLREYVRT-----HDVQAWANSFLDDL 459 (460)
T ss_pred HHHHHcCCH-HHHHHHHHHHHHHHHh-----CCHHHHHHHHHHhh
Confidence 999997642 1333333344444433 56667777777665
No 127
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=92.83 E-value=0.74 Score=35.73 Aligned_cols=110 Identities=17% Similarity=0.212 Sum_probs=65.0
Q ss_pred HhhcccCCcceecCCChhhHHHHHHcCCCeecccc-cccchhhHHHHHHHhc-------ccceecCC-CCCCccHHHHHH
Q 035557 7 EVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQ-WTDQSTNSKCVMDVWK-------TGLKVPAD-DKGIVRREAIAH 77 (129)
Q Consensus 7 ~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~-~~dq~~na~~~~~~~g-------~g~~~~~~-~~~~~~~~~l~~ 77 (129)
..+..+|+ .+.-+| .-++|+..+|+|||+.=- ..=-+.-+++..+.|= +|..+-++ =....+++.|.+
T Consensus 260 ~a~~~aD~--al~aSG-T~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~ 336 (381)
T COG0763 260 KAFAAADA--ALAASG-TATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLAR 336 (381)
T ss_pred HHHHHhhH--HHHhcc-HHHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHH
Confidence 45667777 666666 456799999999998711 0111223334333311 11111111 011688999999
Q ss_pred HHHHHHhCh-hhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 035557 78 CIREILEGE-RCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANS 123 (129)
Q Consensus 78 ~i~~~l~~~-~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 123 (129)
++..++.|. +.+.+.+...++.+.++. ++++....+.+++.+
T Consensus 337 ~l~~ll~~~~~~~~~~~~~~~l~~~l~~----~~~~e~aA~~vl~~~ 379 (381)
T COG0763 337 ALEELLLNGDRREALKEKFRELHQYLRE----DPASEIAAQAVLELL 379 (381)
T ss_pred HHHHHhcChHhHHHHHHHHHHHHHHHcC----CcHHHHHHHHHHHHh
Confidence 999999887 224566666666666655 346677766666654
No 128
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=92.79 E-value=1.3 Score=37.62 Aligned_cols=51 Identities=20% Similarity=0.197 Sum_probs=38.5
Q ss_pred hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHH
Q 035557 23 WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREIL 83 (129)
Q Consensus 23 ~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l 83 (129)
..+++||+++|+|+|+-... -....+.+. ..|..++.. +++++.++|.+++
T Consensus 657 GLvvLEAMAcGlPVVAT~~G----G~~EiV~dg-~tGfLVdp~-----D~eaLA~aL~~ll 707 (784)
T TIGR02470 657 GLTVLEAMTCGLPTFATRFG----GPLEIIQDG-VSGFHIDPY-----HGEEAAEKIVDFF 707 (784)
T ss_pred CHHHHHHHHcCCCEEEcCCC----CHHHHhcCC-CcEEEeCCC-----CHHHHHHHHHHHH
Confidence 47999999999999986442 244555555 678888653 7788999988876
No 129
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=92.77 E-value=0.11 Score=39.78 Aligned_cols=61 Identities=21% Similarity=0.282 Sum_probs=41.5
Q ss_pred HHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccce-ecCCCCCCccHHHHHHHHHHHH
Q 035557 6 LEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLK-VPADDKGIVRREAIAHCIREIL 83 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~-~~~~~~~~~~~~~l~~~i~~~l 83 (129)
..++.++++ +|+-++.+. .||.+.|+|.|.+- +.+ ...+. |..+. + ..++++|.+++.+++
T Consensus 276 l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~----e~~~~-g~nvl~v------g~~~~~I~~a~~~~~ 337 (365)
T TIGR03568 276 LSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ----KGRLR-ADSVIDV------DPDKEEIVKAIEKLL 337 (365)
T ss_pred HHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc----hhhhh-cCeEEEe------CCCHHHHHHHHHHHh
Confidence 457788998 998875555 89999999999773 211 11223 33323 3 347899999999854
No 130
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=92.57 E-value=0.43 Score=38.53 Aligned_cols=62 Identities=15% Similarity=0.243 Sum_probs=43.9
Q ss_pred hhcccCCcceecCC---ChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHh
Q 035557 8 VLAHEATGCFLTHC---GWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILE 84 (129)
Q Consensus 8 iL~~~~~~~~I~hg---G~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~ 84 (129)
.+..+.+ +|.=+ |.++.+||+.+|+|+| .......+.+. .-|.++ + +..++.+++..+|.
T Consensus 425 ~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li--~-----d~~~l~~al~~~L~ 487 (519)
T TIGR03713 425 ALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYII--D-----DISELLKALDYYLD 487 (519)
T ss_pred HHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEe--C-----CHHHHHHHHHHHHh
Confidence 4455555 66544 5679999999999999 22234445555 567666 2 66889999999998
Q ss_pred Ch
Q 035557 85 GE 86 (129)
Q Consensus 85 ~~ 86 (129)
+.
T Consensus 488 ~~ 489 (519)
T TIGR03713 488 NL 489 (519)
T ss_pred CH
Confidence 87
No 131
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=92.24 E-value=0.75 Score=35.13 Aligned_cols=66 Identities=18% Similarity=0.183 Sum_probs=44.8
Q ss_pred HHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHH
Q 035557 6 LEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREIL 83 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l 83 (129)
.++|.++++ +|+-|| ....||...|+|.|.+ +.++-...-+.+.+. |. ... ..+++++.+.+++.+
T Consensus 243 ~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gl--l~~-----~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 243 LDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GL--LYH-----STDPDEIVEYVRKNL 308 (335)
T ss_pred HHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CC--eEe-----cCCHHHHHHHHHHhh
Confidence 478999999 998777 7788999999999986 223322344566666 54 443 346677776555544
No 132
>PLN02846 digalactosyldiacylglycerol synthase
Probab=91.85 E-value=1.6 Score=34.83 Aligned_cols=68 Identities=15% Similarity=0.105 Sum_probs=46.4
Q ss_pred ChHHhhcccCCcceecCCC----hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHH
Q 035557 4 PQLEVLAHEATGCFLTHCG----WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCI 79 (129)
Q Consensus 4 pq~~iL~~~~~~~~I~hgG----~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i 79 (129)
+...++...++ ||.-+- ..+++||+++|+|+|+..... | ..+.+. +.|... .+.+++.+++
T Consensus 293 ~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~-~ng~~~-------~~~~~~a~ai 357 (462)
T PLN02846 293 HADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQF-PNCRTY-------DDGKGFVRAT 357 (462)
T ss_pred CHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecC-CceEec-------CCHHHHHHHH
Confidence 34457788888 877643 478999999999999985432 2 333333 444333 2567899999
Q ss_pred HHHHhCh
Q 035557 80 REILEGE 86 (129)
Q Consensus 80 ~~~l~~~ 86 (129)
.+++.++
T Consensus 358 ~~~l~~~ 364 (462)
T PLN02846 358 LKALAEE 364 (462)
T ss_pred HHHHccC
Confidence 9988754
No 133
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=91.57 E-value=0.93 Score=37.18 Aligned_cols=80 Identities=10% Similarity=0.002 Sum_probs=46.0
Q ss_pred ChHHhhcccCCcceec-CCC-hhhHHHHHHcCCCeeccccccc-chhhHHHHHHHhc--ccceecCCCC--CCccHHHHH
Q 035557 4 PQLEVLAHEATGCFLT-HCG-WNSTMEARSLGVPMVAMPQWTD-QSTNSKCVMDVWK--TGLKVPADDK--GIVRREAIA 76 (129)
Q Consensus 4 pq~~iL~~~~~~~~I~-hgG-~~s~~eal~~gvP~i~~P~~~d-q~~na~~~~~~~g--~g~~~~~~~~--~~~~~~~l~ 76 (129)
+..++++.|++.++-+ +=| ..+++||+++|+|+|+-...+= ... ..+... + .|+.+..... -..+.+.+.
T Consensus 467 ~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v--~E~v~~-~~~~gi~V~~r~~~~~~e~v~~La 543 (590)
T cd03793 467 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFM--EEHIED-PESYGIYIVDRRFKSPDESVQQLT 543 (590)
T ss_pred chHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhh--HHHhcc-CCCceEEEecCCccchHHHHHHHH
Confidence 4567788899833333 234 4699999999999999865321 111 111111 1 4666643211 123456777
Q ss_pred HHHHHHHhCh
Q 035557 77 HCIREILEGE 86 (129)
Q Consensus 77 ~~i~~~l~~~ 86 (129)
+++.+++..+
T Consensus 544 ~~m~~~~~~~ 553 (590)
T cd03793 544 QYMYEFCQLS 553 (590)
T ss_pred HHHHHHhCCc
Confidence 7777777543
No 134
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=91.22 E-value=0.88 Score=35.45 Aligned_cols=67 Identities=21% Similarity=0.084 Sum_probs=43.6
Q ss_pred HhhcccCCcceecCC---C-hhhHHHHHHcCCCeecccccccchhhHHHHH---HHhcccceecCCCCCCccHHHHHHHH
Q 035557 7 EVLAHEATGCFLTHC---G-WNSTMEARSLGVPMVAMPQWTDQSTNSKCVM---DVWKTGLKVPADDKGIVRREAIAHCI 79 (129)
Q Consensus 7 ~iL~~~~~~~~I~hg---G-~~s~~eal~~gvP~i~~P~~~dq~~na~~~~---~~~g~g~~~~~~~~~~~~~~~l~~~i 79 (129)
.+|+.+++ +|+-. | ..++.|++++|+|.|+....+. ....+. +. ..|... . +++++.+++
T Consensus 320 ~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g-~~G~l~------~-d~~~la~ai 386 (419)
T cd03806 320 EELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGG-PTGFLA------S-TAEEYAEAI 386 (419)
T ss_pred HHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chheeeccCCC-CceEEe------C-CHHHHHHHH
Confidence 56788887 55322 1 3688999999999998643221 111122 23 456554 2 788999999
Q ss_pred HHHHhCh
Q 035557 80 REILEGE 86 (129)
Q Consensus 80 ~~~l~~~ 86 (129)
.++++++
T Consensus 387 ~~ll~~~ 393 (419)
T cd03806 387 EKILSLS 393 (419)
T ss_pred HHHHhCC
Confidence 9999865
No 135
>PLN02501 digalactosyldiacylglycerol synthase
Probab=91.15 E-value=2 Score=36.36 Aligned_cols=65 Identities=18% Similarity=0.180 Sum_probs=44.6
Q ss_pred HhhcccCCcceecCCC----hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHH
Q 035557 7 EVLAHEATGCFLTHCG----WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREI 82 (129)
Q Consensus 7 ~iL~~~~~~~~I~hgG----~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~ 82 (129)
.++..+++ ||.-+= ..+++||+++|+|+|+....+... +.+. +.|. + .-+.+++.++|.++
T Consensus 614 ~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~g-~nGl-l------~~D~EafAeAI~~L 678 (794)
T PLN02501 614 DSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRSF-PNCL-T------YKTSEDFVAKVKEA 678 (794)
T ss_pred HHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eeec-CCeE-e------cCCHHHHHHHHHHH
Confidence 47888888 766432 478999999999999986544221 1112 2232 2 12688999999999
Q ss_pred HhCh
Q 035557 83 LEGE 86 (129)
Q Consensus 83 l~~~ 86 (129)
+.++
T Consensus 679 Lsd~ 682 (794)
T PLN02501 679 LANE 682 (794)
T ss_pred HhCc
Confidence 9876
No 136
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=90.72 E-value=1.1 Score=36.72 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=31.7
Q ss_pred CCChhhHHHHHHcCCCeecccccccchh--hHHHHHHHhccccee
Q 035557 20 HCGWNSTMEARSLGVPMVAMPQWTDQST--NSKCVMDVWKTGLKV 62 (129)
Q Consensus 20 hgG~~s~~eal~~gvP~i~~P~~~dq~~--na~~~~~~~g~g~~~ 62 (129)
.+|+.|..|++..|||+|..+ ++|+. |+..+....|+-..+
T Consensus 518 Y~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~v 560 (620)
T COG3914 518 YGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELV 560 (620)
T ss_pred CCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhh
Confidence 689999999999999999996 78875 555555543665555
No 137
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=89.65 E-value=0.46 Score=32.33 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=26.8
Q ss_pred hhcccCCcceecCCC----hhhHHHHHHcCCCeecccccc
Q 035557 8 VLAHEATGCFLTHCG----WNSTMEARSLGVPMVAMPQWT 43 (129)
Q Consensus 8 iL~~~~~~~~I~hgG----~~s~~eal~~gvP~i~~P~~~ 43 (129)
++..+++ +++-.. .++++|++++|+|+|+.+..+
T Consensus 178 ~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 178 LLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred HhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 3444788 777665 689999999999999987643
No 138
>PLN02316 synthase/transferase
Probab=89.41 E-value=4.9 Score=35.34 Aligned_cols=71 Identities=10% Similarity=0.033 Sum_probs=46.3
Q ss_pred HhhcccCCcceecCC----ChhhHHHHHHcCCCeecccccc--cchhh-------HHHHHHHhcccceecCCCCCCccHH
Q 035557 7 EVLAHEATGCFLTHC----GWNSTMEARSLGVPMVAMPQWT--DQSTN-------SKCVMDVWKTGLKVPADDKGIVRRE 73 (129)
Q Consensus 7 ~iL~~~~~~~~I~hg----G~~s~~eal~~gvP~i~~P~~~--dq~~n-------a~~~~~~~g~g~~~~~~~~~~~~~~ 73 (129)
.+++.+++ |+.-+ -..+.+||+.+|+|.|+-...+ |.... +...... +.|..++. .+++
T Consensus 915 ~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~-~tGflf~~-----~d~~ 986 (1036)
T PLN02316 915 LIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLE-PNGFSFDG-----ADAA 986 (1036)
T ss_pred HHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccC-CceEEeCC-----CCHH
Confidence 57888888 77543 2479999999999988765422 22211 1100012 46777754 4788
Q ss_pred HHHHHHHHHHhC
Q 035557 74 AIAHCIREILEG 85 (129)
Q Consensus 74 ~l~~~i~~~l~~ 85 (129)
.+..+|.+++..
T Consensus 987 aLa~AL~raL~~ 998 (1036)
T PLN02316 987 GVDYALNRAISA 998 (1036)
T ss_pred HHHHHHHHHHhh
Confidence 999999999864
No 139
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=89.20 E-value=0.34 Score=33.31 Aligned_cols=68 Identities=12% Similarity=0.223 Sum_probs=40.5
Q ss_pred cccCCcceecCCChhhHHHHHHcCCCeeccccc-----------------------ccchhhHHHHHHHhcccceecCCC
Q 035557 10 AHEATGCFLTHCGWNSTMEARSLGVPMVAMPQW-----------------------TDQSTNSKCVMDVWKTGLKVPADD 66 (129)
Q Consensus 10 ~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~-----------------------~dq~~na~~~~~~~g~g~~~~~~~ 66 (129)
..+++ +|++||...+..... ++|+|-+|.. .+.......+.+.+|+-+....
T Consensus 33 ~g~dV--iIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~-- 107 (176)
T PF06506_consen 33 EGADV--IISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYP-- 107 (176)
T ss_dssp TT-SE--EEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEE--
T ss_pred cCCeE--EEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEE--
Confidence 34455 999999988888877 9999999982 2233446666666555444332
Q ss_pred CCCccHHHHHHHHHHHHh
Q 035557 67 KGIVRREAIAHCIREILE 84 (129)
Q Consensus 67 ~~~~~~~~l~~~i~~~l~ 84 (129)
.-+.+++...|.++..
T Consensus 108 --~~~~~e~~~~i~~~~~ 123 (176)
T PF06506_consen 108 --YDSEEEIEAAIKQAKA 123 (176)
T ss_dssp --ESSHHHHHHHHHHHHH
T ss_pred --ECCHHHHHHHHHHHHH
Confidence 3456777777777654
No 140
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.95 E-value=1 Score=33.30 Aligned_cols=53 Identities=13% Similarity=0.018 Sum_probs=36.9
Q ss_pred ccCCcceecCCChhhHHHHHH------cCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHh
Q 035557 11 HEATGCFLTHCGWNSTMEARS------LGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILE 84 (129)
Q Consensus 11 ~~~~~~~I~hgG~~s~~eal~------~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~ 84 (129)
.+++ +|+-||-||++.++. .++|++.+. .|..=-.. ..+++++.+.+.++++
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN-----------------~G~lGFL~---~~~~~~~~~~l~~i~~ 92 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVH-----------------TGHLGFYT---DWRPFEVDKLVIALAK 92 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEe-----------------CCCceecc---cCCHHHHHHHHHHHHc
Confidence 3566 999999999999976 478888873 23221111 4566777778887776
Q ss_pred C
Q 035557 85 G 85 (129)
Q Consensus 85 ~ 85 (129)
+
T Consensus 93 g 93 (265)
T PRK04885 93 D 93 (265)
T ss_pred C
Confidence 5
No 141
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=88.21 E-value=1.3 Score=33.44 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=31.3
Q ss_pred ChHHhhcccCCcceecCCC-hhhHHHHHHcCCCeecccccc
Q 035557 4 PQLEVLAHEATGCFLTHCG-WNSTMEARSLGVPMVAMPQWT 43 (129)
Q Consensus 4 pq~~iL~~~~~~~~I~hgG-~~s~~eal~~gvP~i~~P~~~ 43 (129)
|...+|+.++. |+.-+. .+.+.||+..|+|+.++|+..
T Consensus 221 Py~~~La~ad~--i~VT~DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 221 PYLGFLAAADA--IVVTEDSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred cHHHHHHhCCE--EEEcCccHHHHHHHHHcCCCEEEecCCC
Confidence 56778888887 555555 588899999999999999876
No 142
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=87.84 E-value=1.6 Score=32.60 Aligned_cols=54 Identities=13% Similarity=0.268 Sum_probs=37.6
Q ss_pred ccCCcceecCCChhhHHHHHHc----CCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhCh
Q 035557 11 HEATGCFLTHCGWNSTMEARSL----GVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEGE 86 (129)
Q Consensus 11 ~~~~~~~I~hgG~~s~~eal~~----gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 86 (129)
.+++ +|+-||-||+++++.. ++|++.+-. - .+|-.. ..+++++.+.+.+++.++
T Consensus 63 ~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~-----------G---~lGFL~------~~~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 63 RADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINH-----------G---RLGFIT------DIPLDDMQETLPPMLAGN 120 (291)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcC-----------C---Cccccc------cCCHHHHHHHHHHHHcCC
Confidence 4567 9999999999999764 678877731 0 123222 456788888888887653
No 143
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.73 E-value=1.5 Score=32.84 Aligned_cols=55 Identities=7% Similarity=0.048 Sum_probs=38.0
Q ss_pred cccCCcceecCCChhhHHHHHHc----CCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhC
Q 035557 10 AHEATGCFLTHCGWNSTMEARSL----GVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEG 85 (129)
Q Consensus 10 ~~~~~~~~I~hgG~~s~~eal~~----gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 85 (129)
..+++ +|+-||-||++.+... ++|++.+- .|..=-.. ..+++++.+++.+++.+
T Consensus 63 ~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN-----------------~G~lGFLt---~~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 63 KISDF--LISLGGDGTLISLCRKAAEYDKFVLGIH-----------------AGHLGFLT---DITVDEAEKFFQAFFQG 120 (287)
T ss_pred cCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEe-----------------CCCcccCC---cCCHHHHHHHHHHHHcC
Confidence 35677 9999999999987653 77888772 33221112 45678888888888765
Q ss_pred h
Q 035557 86 E 86 (129)
Q Consensus 86 ~ 86 (129)
+
T Consensus 121 ~ 121 (287)
T PRK14077 121 E 121 (287)
T ss_pred C
Confidence 3
No 144
>PLN02939 transferase, transferring glycosyl groups
Probab=87.63 E-value=4.6 Score=35.23 Aligned_cols=70 Identities=10% Similarity=0.182 Sum_probs=45.2
Q ss_pred HhhcccCCcceecCC----ChhhHHHHHHcCCCeecccccc--cchhh--HHHH-HHHhcccceecCCCCCCccHHHHHH
Q 035557 7 EVLAHEATGCFLTHC----GWNSTMEARSLGVPMVAMPQWT--DQSTN--SKCV-MDVWKTGLKVPADDKGIVRREAIAH 77 (129)
Q Consensus 7 ~iL~~~~~~~~I~hg----G~~s~~eal~~gvP~i~~P~~~--dq~~n--a~~~-~~~~g~g~~~~~~~~~~~~~~~l~~ 77 (129)
.+++.+++ |+.-+ -..+.+||+++|+|.|+....+ |...+ ...+ ... +.|..++. .+++.+.+
T Consensus 852 ~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg-~NGfLf~~-----~D~eaLa~ 923 (977)
T PLN02939 852 SIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVEL-RNGFTFLT-----PDEQGLNS 923 (977)
T ss_pred HHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCC-CceEEecC-----CCHHHHHH
Confidence 57888888 77543 2468999999999999876533 22211 1111 112 45766653 37888988
Q ss_pred HHHHHHh
Q 035557 78 CIREILE 84 (129)
Q Consensus 78 ~i~~~l~ 84 (129)
+|.+++.
T Consensus 924 AL~rAL~ 930 (977)
T PLN02939 924 ALERAFN 930 (977)
T ss_pred HHHHHHH
Confidence 8888764
No 145
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.16 E-value=1.7 Score=32.51 Aligned_cols=55 Identities=18% Similarity=0.389 Sum_probs=39.4
Q ss_pred cccCCcceecCCChhhHHHHHHc----CCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhC
Q 035557 10 AHEATGCFLTHCGWNSTMEARSL----GVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEG 85 (129)
Q Consensus 10 ~~~~~~~~I~hgG~~s~~eal~~----gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 85 (129)
..+++ +|+=||-||++.+... ++|++.+-+. .+|-.- ..+++++.+++.+++.+
T Consensus 63 ~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFLt------~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 63 GSADM--VISIGGDGTFLRTATYVGNSNIPILGINTG--------------RLGFLA------TVSKEEIEETIDELLNG 120 (292)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEecC--------------CCCccc------ccCHHHHHHHHHHHHcC
Confidence 35677 9999999999988773 7888887320 123222 56778888889888876
Q ss_pred h
Q 035557 86 E 86 (129)
Q Consensus 86 ~ 86 (129)
.
T Consensus 121 ~ 121 (292)
T PRK01911 121 D 121 (292)
T ss_pred C
Confidence 4
No 146
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.94 E-value=1.7 Score=32.83 Aligned_cols=55 Identities=15% Similarity=0.269 Sum_probs=38.8
Q ss_pred cccCCcceecCCChhhHHHHHHc----CCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhC
Q 035557 10 AHEATGCFLTHCGWNSTMEARSL----GVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEG 85 (129)
Q Consensus 10 ~~~~~~~~I~hgG~~s~~eal~~----gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 85 (129)
..+++ +|+=||-||++.+... ++|++.+-+ - .+|-.- ..+++++.+++.+++++
T Consensus 67 ~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~-------------G-~lGFLt------~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 67 SSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINT-------------G-HLGFLT------EAYLNQLDEAIDQVLAG 124 (305)
T ss_pred cCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeC-------------C-CCcccc------cCCHHHHHHHHHHHHcC
Confidence 34667 9999999999998764 788888832 0 123222 45678888888888865
Q ss_pred h
Q 035557 86 E 86 (129)
Q Consensus 86 ~ 86 (129)
+
T Consensus 125 ~ 125 (305)
T PRK02649 125 Q 125 (305)
T ss_pred C
Confidence 4
No 147
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=86.45 E-value=2.5 Score=35.53 Aligned_cols=102 Identities=16% Similarity=0.073 Sum_probs=59.6
Q ss_pred HhhcccCCcceecCC---Ch-hhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHH
Q 035557 7 EVLAHEATGCFLTHC---GW-NSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREI 82 (129)
Q Consensus 7 ~iL~~~~~~~~I~hg---G~-~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~ 82 (129)
.+++.+++ |+.-+ |. .++.|++++|+|-..+|+..+- +--..+. .-|+.++. .+.+++.++|.++
T Consensus 357 ~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~---~G~~~~l-~~~llv~P-----~d~~~la~ai~~~ 425 (726)
T PRK14501 357 ALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEM---AGAAAEL-AEALLVNP-----NDIEGIAAAIKRA 425 (726)
T ss_pred HHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecc---cchhHHh-CcCeEECC-----CCHHHHHHHHHHH
Confidence 45677887 66532 43 5778999997763333332221 1111222 33777764 4789999999999
Q ss_pred HhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhh
Q 035557 83 LEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSIS 125 (129)
Q Consensus 83 l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 125 (129)
+..+.. +.+++..++.+.+.. .+...-++.|++.+..
T Consensus 426 l~~~~~-e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~~ 462 (726)
T PRK14501 426 LEMPEE-EQRERMQAMQERLRR-----YDVHKWASDFLDELRE 462 (726)
T ss_pred HcCCHH-HHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHH
Confidence 875321 444445555555443 5666666676666554
No 148
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.03 E-value=1.9 Score=32.35 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=38.7
Q ss_pred cccCCcceecCCChhhHHHHHH----cCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhC
Q 035557 10 AHEATGCFLTHCGWNSTMEARS----LGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEG 85 (129)
Q Consensus 10 ~~~~~~~~I~hgG~~s~~eal~----~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 85 (129)
..+++ +|+=||-||++.+.. .++|++.+-. - .+|-.- ..+++++.+++.+++++
T Consensus 67 ~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~--------G------~lGFL~------~~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 67 QYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQ--------G------HLGFLT------QIPREYMTDKLLPVLEG 124 (296)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEec--------C------CCeEee------ccCHHHHHHHHHHHHcC
Confidence 35677 999999999999875 3788888721 0 133333 45678888888888865
Q ss_pred h
Q 035557 86 E 86 (129)
Q Consensus 86 ~ 86 (129)
+
T Consensus 125 ~ 125 (296)
T PRK04539 125 K 125 (296)
T ss_pred C
Confidence 3
No 149
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=85.30 E-value=2.1 Score=32.08 Aligned_cols=55 Identities=11% Similarity=0.142 Sum_probs=38.2
Q ss_pred cccCCcceecCCChhhHHHHHH----cCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhC
Q 035557 10 AHEATGCFLTHCGWNSTMEARS----LGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEG 85 (129)
Q Consensus 10 ~~~~~~~~I~hgG~~s~~eal~----~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 85 (129)
..+++ +|+=||-||++.+.. .++|++.+- .|..=-.. .++++++.+++++++++
T Consensus 62 ~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin-----------------~G~lGFl~---~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 62 QQADL--AIVVGGDGNMLGAARVLARYDIKVIGIN-----------------RGNLGFLT---DLDPDNALQQLSDVLEG 119 (292)
T ss_pred CCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEE-----------------CCCCCccc---ccCHHHHHHHHHHHHcC
Confidence 34666 999999999999975 367877773 33211111 45678888999988875
Q ss_pred h
Q 035557 86 E 86 (129)
Q Consensus 86 ~ 86 (129)
.
T Consensus 120 ~ 120 (292)
T PRK03378 120 H 120 (292)
T ss_pred C
Confidence 3
No 150
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=84.58 E-value=3.3 Score=30.75 Aligned_cols=57 Identities=11% Similarity=0.139 Sum_probs=38.4
Q ss_pred HHhhcccCCcceecCCChhhHHHHHH----cCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHH
Q 035557 6 LEVLAHEATGCFLTHCGWNSTMEARS----LGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIRE 81 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hgG~~s~~eal~----~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ 81 (129)
..+...+++ +|+=||-||++.+.. .++|++.+-.. .+|-.. ..+++++.+.+.+
T Consensus 37 ~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGFL~------~~~~~~~~~~l~~ 94 (272)
T PRK02231 37 EEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGFLT------DIDPKNAYEQLEA 94 (272)
T ss_pred HHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCcccc------cCCHHHHHHHHHH
Confidence 344445677 999999999998755 36788877320 134333 4566777777877
Q ss_pred HHh
Q 035557 82 ILE 84 (129)
Q Consensus 82 ~l~ 84 (129)
++.
T Consensus 95 ~~~ 97 (272)
T PRK02231 95 CLE 97 (272)
T ss_pred HHh
Confidence 776
No 151
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=83.73 E-value=2.5 Score=34.12 Aligned_cols=55 Identities=22% Similarity=0.297 Sum_probs=38.6
Q ss_pred cccCCcceecCCChhhHHHHHHc----CCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhC
Q 035557 10 AHEATGCFLTHCGWNSTMEARSL----GVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEG 85 (129)
Q Consensus 10 ~~~~~~~~I~hgG~~s~~eal~~----gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 85 (129)
..+++ +|+=||-||++.+... ++|++.+-+ - .+|-.- .++++++.+++.+++.+
T Consensus 261 ~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGIN~-----------G---~LGFLt------~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 261 TKVDL--VITLGGDGTVLWAASMFKGPVPPVVPFSM-----------G---SLGFMT------PFHSEQYRDCLDAILKG 318 (508)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeC-----------C---Ccceec------ccCHHHHHHHHHHHHcC
Confidence 34677 9999999999998764 567766621 0 134332 56788888899888865
Q ss_pred h
Q 035557 86 E 86 (129)
Q Consensus 86 ~ 86 (129)
+
T Consensus 319 ~ 319 (508)
T PLN02935 319 P 319 (508)
T ss_pred C
Confidence 4
No 152
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.54 E-value=2.4 Score=31.98 Aligned_cols=55 Identities=15% Similarity=0.247 Sum_probs=39.5
Q ss_pred cccCCcceecCCChhhHHHHHHc----CCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhC
Q 035557 10 AHEATGCFLTHCGWNSTMEARSL----GVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEG 85 (129)
Q Consensus 10 ~~~~~~~~I~hgG~~s~~eal~~----gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 85 (129)
..+++ +|+=||-||++.+... ++|++.+.+. .+|-.. ...++++.+++.+++.+
T Consensus 71 ~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL~------~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 71 DGCEL--VLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFLA------EAEAEDLDEAVERVVDR 128 (306)
T ss_pred cCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCceec------cCCHHHHHHHHHHHHcC
Confidence 34667 9999999999998764 7888888430 234333 45678888888888876
Q ss_pred h
Q 035557 86 E 86 (129)
Q Consensus 86 ~ 86 (129)
+
T Consensus 129 ~ 129 (306)
T PRK03372 129 D 129 (306)
T ss_pred C
Confidence 4
No 153
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=83.39 E-value=1.9 Score=35.59 Aligned_cols=92 Identities=12% Similarity=0.131 Sum_probs=49.6
Q ss_pred CChHHhhcccCCcceecCCC-h-hhHHHHHHcCCCeecccccc-----cchhhHHHHHHHhcccceecCCCCCCccHHHH
Q 035557 3 CPQLEVLAHEATGCFLTHCG-W-NSTMEARSLGVPMVAMPQWT-----DQSTNSKCVMDVWKTGLKVPADDKGIVRREAI 75 (129)
Q Consensus 3 ~pq~~iL~~~~~~~~I~hgG-~-~s~~eal~~gvP~i~~P~~~-----dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l 75 (129)
+|..+++..|+++.|-+.== | -|-+|++++|||.|+-=+.+ .+... .-... |+-++-.. ..+.++.
T Consensus 461 l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~--~~~~~-GV~VvdR~----~~n~~e~ 533 (633)
T PF05693_consen 461 LDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIE--DPEEY-GVYVVDRR----DKNYDES 533 (633)
T ss_dssp S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS---HHGGG-TEEEE-SS----SS-HHHH
T ss_pred CCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhc--cCcCC-cEEEEeCC----CCCHHHH
Confidence 46778889999977776321 2 48899999999999886632 11111 11233 55544433 4555665
Q ss_pred HHHHHHHHhC-----h-hhHHHHHHHHHHHHH
Q 035557 76 AHCIREILEG-----E-RCKEIRQNAGKWSNF 101 (129)
Q Consensus 76 ~~~i~~~l~~-----~-~~~~~~~~a~~l~~~ 101 (129)
.+.+.+.|.+ . +....|.++.++++.
T Consensus 534 v~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~ 565 (633)
T PF05693_consen 534 VNQLADFLYKFCQLSRRQRIIQRNRAERLSDL 565 (633)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 5565555432 1 123567777776655
No 154
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.72 E-value=4.2 Score=30.49 Aligned_cols=54 Identities=19% Similarity=0.294 Sum_probs=38.3
Q ss_pred ccCCcceecCCChhhHHHHHH----cCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhCh
Q 035557 11 HEATGCFLTHCGWNSTMEARS----LGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEGE 86 (129)
Q Consensus 11 ~~~~~~~I~hgG~~s~~eal~----~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 86 (129)
.+++ +|+=||-||+++++. .++|++.+... .+|..- ..+++++.+++.++++++
T Consensus 62 ~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------------~lGFl~------~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 62 VCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG--------------RLGFLT------DIRPDELEFKLAEVLDGH 119 (295)
T ss_pred CCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------------cccccc------cCCHHHHHHHHHHHHcCC
Confidence 3556 999999999999875 36788877430 233222 457788999999888653
No 155
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.34 E-value=4 Score=30.27 Aligned_cols=54 Identities=13% Similarity=0.286 Sum_probs=37.8
Q ss_pred ccCCcceecCCChhhHHHHHHc-CCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhCh
Q 035557 11 HEATGCFLTHCGWNSTMEARSL-GVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEGE 86 (129)
Q Consensus 11 ~~~~~~~I~hgG~~s~~eal~~-gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 86 (129)
.+++ +|+=||-||++.+... ..|++.+-. - .+|-.- ..+++++.++++++++++
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGIN~--------G------~lGFL~------~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGINM--------G------GLGFLT------EIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEEEC--------C------CCccCc------ccCHHHHHHHHHHHHcCC
Confidence 4566 9999999999998873 567766621 0 123222 467788888999888763
No 156
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.46 E-value=4.5 Score=29.68 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=37.2
Q ss_pred ccCCcceecCCChhhHHHHHH-cCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhCh
Q 035557 11 HEATGCFLTHCGWNSTMEARS-LGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEGE 86 (129)
Q Consensus 11 ~~~~~~~I~hgG~~s~~eal~-~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 86 (129)
.+++ +|+=||-||++.++. .++|++.+-.. .+|-.. ..+.+++.+++.+++.++
T Consensus 41 ~~d~--vi~iGGDGT~L~a~~~~~~Pilgin~G--------------~lGfl~------~~~~~~~~~~l~~~~~g~ 95 (256)
T PRK14075 41 TADL--IIVVGGDGTVLKAAKKVGTPLVGFKAG--------------RLGFLS------SYTLEEIDRFLEDLKNWN 95 (256)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCEEEEeCC--------------CCcccc------ccCHHHHHHHHHHHHcCC
Confidence 4566 999999999998876 47787776310 123333 456777888888887653
No 157
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.86 E-value=4.3 Score=30.01 Aligned_cols=55 Identities=11% Similarity=0.102 Sum_probs=36.7
Q ss_pred ccCCcceecCCChhhHHHHHHc-----CCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhC
Q 035557 11 HEATGCFLTHCGWNSTMEARSL-----GVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEG 85 (129)
Q Consensus 11 ~~~~~~~I~hgG~~s~~eal~~-----gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 85 (129)
.+++ +|+=||-||++.++.. .+|++.+...+ .+|-. . ..+.+++.+++.+++++
T Consensus 39 ~~D~--vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G-------------~lGFL---~---~~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 39 NANI--IVSIGGDGTFLQAVRKTGFREDCLYAGISTKD-------------QLGFY---C---DFHIDDLDKMIQAITKE 97 (264)
T ss_pred CccE--EEEECCcHHHHHHHHHhcccCCCeEEeEecCC-------------CCeEc---c---cCCHHHHHHHHHHHHcC
Confidence 3566 9999999999999874 56666652200 12322 2 45678888888888765
Q ss_pred h
Q 035557 86 E 86 (129)
Q Consensus 86 ~ 86 (129)
+
T Consensus 98 ~ 98 (264)
T PRK03501 98 E 98 (264)
T ss_pred C
Confidence 3
No 158
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=78.46 E-value=1.4 Score=35.35 Aligned_cols=69 Identities=19% Similarity=0.221 Sum_probs=42.9
Q ss_pred eecCCC---hhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhChhhHHHHH
Q 035557 17 FLTHCG---WNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEGERCKEIRQ 93 (129)
Q Consensus 17 ~I~hgG---~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~ 93 (129)
|++-.+ ..++.||+++|+|+++.=-.+ =+.-+... -.|..++.. .-....+.+++.++..|+ +++.
T Consensus 370 ~~qPa~E~FGiv~IEAMa~glPvvAt~~GG----P~EiV~~~-~tG~l~dp~---~e~~~~~a~~~~kl~~~p---~l~~ 438 (495)
T KOG0853|consen 370 LYQPANEHFGIVPIEAMACGLPVVATNNGG----PAEIVVHG-VTGLLIDPG---QEAVAELADALLKLRRDP---ELWA 438 (495)
T ss_pred EecCCCCCccceeHHHHhcCCCEEEecCCC----ceEEEEcC-CcceeeCCc---hHHHHHHHHHHHHHhcCH---HHHH
Confidence 555444 368899999999999883211 11122222 346666543 333447999999999888 6655
Q ss_pred HHH
Q 035557 94 NAG 96 (129)
Q Consensus 94 ~a~ 96 (129)
++.
T Consensus 439 ~~~ 441 (495)
T KOG0853|consen 439 RMG 441 (495)
T ss_pred HHH
Confidence 554
No 159
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.61 E-value=4.9 Score=32.91 Aligned_cols=54 Identities=20% Similarity=0.366 Sum_probs=38.4
Q ss_pred ccCCcceecCCChhhHHHHHHc----CCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhCh
Q 035557 11 HEATGCFLTHCGWNSTMEARSL----GVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEGE 86 (129)
Q Consensus 11 ~~~~~~~I~hgG~~s~~eal~~----gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 86 (129)
.+++ +|+-||-||++.+... ++|++.+-+. .+|-.- ..+++++.+.+.++++++
T Consensus 348 ~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGin~G--------------~lGFL~------~~~~~~~~~~l~~~~~g~ 405 (569)
T PRK14076 348 EISH--IISIGGDGTVLRASKLVNGEEIPIICINMG--------------TVGFLT------EFSKEEIFKAIDSIISGE 405 (569)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------------CCCcCc------ccCHHHHHHHHHHHHcCC
Confidence 4566 9999999999998764 7788887320 123222 457788888888888653
No 160
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=76.46 E-value=13 Score=28.41 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=51.4
Q ss_pred hHHhhcccCCcceecC--CChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHH
Q 035557 5 QLEVLAHEATGCFLTH--CGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREI 82 (129)
Q Consensus 5 q~~iL~~~~~~~~I~h--gG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~ 82 (129)
...+|+.|+++.|+++ =|.||++-.+..|+|+++- .+-+.+.. +.+. |+-+..+.+ .++...+.++=+++
T Consensus 220 Yl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqd-l~e~-gv~Vlf~~d---~L~~~~v~e~~rql 291 (322)
T PRK02797 220 YLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQD-LTEQ-GLPVLFTGD---DLDEDIVREAQRQL 291 (322)
T ss_pred HHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHH-HHhC-CCeEEecCC---cccHHHHHHHHHHH
Confidence 4678999999887775 4789999999999999876 23334443 5556 676666666 78888777765554
Q ss_pred H
Q 035557 83 L 83 (129)
Q Consensus 83 l 83 (129)
.
T Consensus 292 ~ 292 (322)
T PRK02797 292 A 292 (322)
T ss_pred H
Confidence 4
No 161
>PRK14099 glycogen synthase; Provisional
Probab=75.84 E-value=17 Score=29.12 Aligned_cols=69 Identities=19% Similarity=0.218 Sum_probs=40.3
Q ss_pred cccCCcceecCC----ChhhHHHHHHcCCCeecccccc--cchhhHH-HH--HHHhcccceecCCCCCCccHHHHHHHHH
Q 035557 10 AHEATGCFLTHC----GWNSTMEARSLGVPMVAMPQWT--DQSTNSK-CV--MDVWKTGLKVPADDKGIVRREAIAHCIR 80 (129)
Q Consensus 10 ~~~~~~~~I~hg----G~~s~~eal~~gvP~i~~P~~~--dq~~na~-~~--~~~~g~g~~~~~~~~~~~~~~~l~~~i~ 80 (129)
+.+++ |+.-+ -..+.+||+++|+|.|+....+ |...+.. .. ... +.|..++. .+++++.+++.
T Consensus 368 a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~-~~G~l~~~-----~d~~~La~ai~ 439 (485)
T PRK14099 368 AGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGV-ATGVQFSP-----VTADALAAALR 439 (485)
T ss_pred hcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCC-CceEEeCC-----CCHHHHHHHHH
Confidence 35677 66432 2468899999998766654322 3221110 00 111 35777754 37889999998
Q ss_pred H---HHhCh
Q 035557 81 E---ILEGE 86 (129)
Q Consensus 81 ~---~l~~~ 86 (129)
+ ++.++
T Consensus 440 ~a~~l~~d~ 448 (485)
T PRK14099 440 KTAALFADP 448 (485)
T ss_pred HHHHHhcCH
Confidence 7 55555
No 162
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=73.06 E-value=29 Score=24.33 Aligned_cols=68 Identities=29% Similarity=0.360 Sum_probs=41.7
Q ss_pred HhhcccCCcceecC---CCh-hhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHH
Q 035557 7 EVLAHEATGCFLTH---CGW-NSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREI 82 (129)
Q Consensus 7 ~iL~~~~~~~~I~h---gG~-~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~ 82 (129)
.++..+++ ++.- .|. .++.|++++|+|+|..+.. .....+.+. +.|..+ . ..+.+++.+++..+
T Consensus 272 ~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~----~~~e~~~~~-~~g~~~-~----~~~~~~~~~~i~~~ 339 (381)
T COG0438 272 ELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDVG----GIPEVVEDG-ETGLLV-P----PGDVEELADALEQL 339 (381)
T ss_pred HHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCCC----ChHHHhcCC-CceEec-C----CCCHHHHHHHHHHH
Confidence 35666666 5544 244 4469999999999777542 122222222 236533 2 12678999999999
Q ss_pred HhCh
Q 035557 83 LEGE 86 (129)
Q Consensus 83 l~~~ 86 (129)
+.+.
T Consensus 340 ~~~~ 343 (381)
T COG0438 340 LEDP 343 (381)
T ss_pred hcCH
Confidence 8775
No 163
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=73.06 E-value=7.2 Score=28.97 Aligned_cols=53 Identities=17% Similarity=0.257 Sum_probs=34.6
Q ss_pred ccCCcceecCCChhhHHHHHH---cCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhC
Q 035557 11 HEATGCFLTHCGWNSTMEARS---LGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEG 85 (129)
Q Consensus 11 ~~~~~~~I~hgG~~s~~eal~---~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 85 (129)
.+++ +|.-||-||+++++. .++|++.+|... +|-.- .++++++.+++.+++++
T Consensus 57 ~~d~--vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~--------------lGFl~------~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 57 DVDF--IIAIGGDGTILRIEHKTKKDIPILGINMGT--------------LGFLT------EVEPEETFFALSRLLEG 112 (277)
T ss_pred CCCE--EEEEeCcHHHHHHHHhcCCCCeEEEEeCCC--------------CCccc------cCCHHHHHHHHHHHHcC
Confidence 3455 999999999999874 356888876411 11111 34466677777777755
No 164
>PLN02929 NADH kinase
Probab=72.74 E-value=8.7 Score=29.02 Aligned_cols=68 Identities=12% Similarity=0.184 Sum_probs=44.1
Q ss_pred hcccCCcceecCCChhhHHHHHH---cCCCeecccccc------cchhhHHHHHHHhcccceecCCCCCCccHHHHHHHH
Q 035557 9 LAHEATGCFLTHCGWNSTMEARS---LGVPMVAMPQWT------DQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCI 79 (129)
Q Consensus 9 L~~~~~~~~I~hgG~~s~~eal~---~gvP~i~~P~~~------dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i 79 (129)
+..+++ +|+-||-||++.+.. .++|++.+-... .++.|. +.....+|..- ..+.+++.+.+
T Consensus 62 ~~~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~--~~~~r~lGfL~------~~~~~~~~~~L 131 (301)
T PLN02929 62 IRDVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDE--FDARRSTGHLC------AATAEDFEQVL 131 (301)
T ss_pred cCCCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccc--cccccCccccc------cCCHHHHHHHH
Confidence 456677 999999999998855 368888874421 122222 11110255444 45678899999
Q ss_pred HHHHhCh
Q 035557 80 REILEGE 86 (129)
Q Consensus 80 ~~~l~~~ 86 (129)
.+++++.
T Consensus 132 ~~il~g~ 138 (301)
T PLN02929 132 DDVLFGR 138 (301)
T ss_pred HHHHcCC
Confidence 9998763
No 165
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=72.50 E-value=4.2 Score=29.59 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=27.8
Q ss_pred ChHHhhcccCCcceecCCChhhHHHHHHcCCCeeccc
Q 035557 4 PQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMP 40 (129)
Q Consensus 4 pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P 40 (129)
+-.++|.+++. +||-.+ ++-+||+.+|+|++++.
T Consensus 192 ~~~~Ll~~s~~--VvtinS-tvGlEAll~gkpVi~~G 225 (269)
T PF05159_consen 192 NLYELLEQSDA--VVTINS-TVGLEALLHGKPVIVFG 225 (269)
T ss_pred CHHHHHHhCCE--EEEECC-HHHHHHHHcCCceEEec
Confidence 44678899998 777754 57889999999999984
No 166
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.09 E-value=28 Score=24.10 Aligned_cols=55 Identities=13% Similarity=0.114 Sum_probs=42.5
Q ss_pred hhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHH
Q 035557 46 STNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEGERCKEIRQNAGKWSNFAKE 104 (129)
Q Consensus 46 ~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~ 104 (129)
..|+.+..+. |.=.++--+ ..+.++|.++..+=+.|++.++++..+.++.++..-
T Consensus 111 ~LN~aY~~rF-gfPfI~aVk---g~~k~~Il~a~~~Rl~n~~e~E~~tAl~eI~rIA~~ 165 (176)
T COG3195 111 ELNAAYVERF-GFPFIIAVK---GNTKDTILAAFERRLDNDREQEFATALAEIERIALL 165 (176)
T ss_pred HHHHHHHHhc-CCceEEeec---CCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 4688888888 877666555 668999999999888887667888888877776544
No 167
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=71.49 E-value=15 Score=30.10 Aligned_cols=29 Identities=10% Similarity=0.210 Sum_probs=24.4
Q ss_pred ccCCcceecCCChhhHHHHHHcCCCeeccccc
Q 035557 11 HEATGCFLTHCGWNSTMEARSLGVPMVAMPQW 42 (129)
Q Consensus 11 ~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~ 42 (129)
.+++ +|++||....... +..+|+|-+++.
T Consensus 64 ~~dv--iIsrG~ta~~i~~-~~~iPVv~i~~s 92 (538)
T PRK15424 64 RCDA--IIAAGSNGAYLKS-RLSVPVILIKPS 92 (538)
T ss_pred CCcE--EEECchHHHHHHh-hCCCCEEEecCC
Confidence 5677 9999999999887 467999999883
No 168
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=70.90 E-value=21 Score=26.88 Aligned_cols=59 Identities=19% Similarity=0.265 Sum_probs=39.0
Q ss_pred CChHHhhcccCCcceecCCCh-hhHHHHHHcCCCeecc--ccc-ccchh-hHHHHHHHhcccceecC
Q 035557 3 CPQLEVLAHEATGCFLTHCGW-NSTMEARSLGVPMVAM--PQW-TDQST-NSKCVMDVWKTGLKVPA 64 (129)
Q Consensus 3 ~pq~~iL~~~~~~~~I~hgG~-~s~~eal~~gvP~i~~--P~~-~dq~~-na~~~~~~~g~g~~~~~ 64 (129)
=|.-++|+.++. +|.-... +...||.+.|+|+.++ |.+ .+.+. .-+.+++. +++...+.
T Consensus 236 NPY~~~La~Ady--ii~TaDSinM~sEAasTgkPv~~~~~~~~~s~K~r~Fi~~L~eq-~~AR~f~~ 299 (329)
T COG3660 236 NPYIDMLAAADY--IISTADSINMCSEAASTGKPVFILEPPNFNSLKFRIFIEQLVEQ-KIARPFEG 299 (329)
T ss_pred CchHHHHhhcce--EEEecchhhhhHHHhccCCCeEEEecCCcchHHHHHHHHHHHHh-hhccccCc
Confidence 378899999998 8877775 6778999999999877 222 11111 22344555 66655543
No 169
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=70.17 E-value=17 Score=29.64 Aligned_cols=29 Identities=7% Similarity=0.169 Sum_probs=23.9
Q ss_pred ccCCcceecCCChhhHHHHHHcCCCeeccccc
Q 035557 11 HEATGCFLTHCGWNSTMEARSLGVPMVAMPQW 42 (129)
Q Consensus 11 ~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~ 42 (129)
.+++ +|++||...+... +..+|+|-+++.
T Consensus 54 ~~dv--iIsrG~ta~~i~~-~~~iPVv~i~~s 82 (526)
T TIGR02329 54 RCDV--VVAGGSNGAYLKS-RLSLPVIVIKPT 82 (526)
T ss_pred CCcE--EEECchHHHHHHH-hCCCCEEEecCC
Confidence 4566 9999999888887 457999999883
No 170
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=68.12 E-value=13 Score=27.24 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=23.0
Q ss_pred cccCCcceecCCChhhHHHHHHc----CCCeeccc
Q 035557 10 AHEATGCFLTHCGWNSTMEARSL----GVPMVAMP 40 (129)
Q Consensus 10 ~~~~~~~~I~hgG~~s~~eal~~----gvP~i~~P 40 (129)
..+++ +|+-||-||++.++.. ++|++.+-
T Consensus 24 ~~~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN 56 (246)
T PRK04761 24 EEADV--IVALGGDGFMLQTLHRYMNSGKPVYGMN 56 (246)
T ss_pred ccCCE--EEEECCCHHHHHHHHHhcCCCCeEEEEe
Confidence 34566 9999999999988664 67888774
No 171
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=66.91 E-value=57 Score=28.70 Aligned_cols=98 Identities=13% Similarity=0.134 Sum_probs=55.1
Q ss_pred HhhcccCCcceec---CCChh-hHHHHHHcCCC---eecccccccchhhHHHHHHHhc-ccceecCCCCCCccHHHHHHH
Q 035557 7 EVLAHEATGCFLT---HCGWN-STMEARSLGVP---MVAMPQWTDQSTNSKCVMDVWK-TGLKVPADDKGIVRREAIAHC 78 (129)
Q Consensus 7 ~iL~~~~~~~~I~---hgG~~-s~~eal~~gvP---~i~~P~~~dq~~na~~~~~~~g-~g~~~~~~~~~~~~~~~l~~~ 78 (129)
.+++.+++ |+. +-|.| ...|+++++.. +++++-+ ---+..+ | -|+.+++ .+.+++.++
T Consensus 455 AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILSEf---aGaa~~L----~~~AllVNP-----~D~~~vA~A 520 (934)
T PLN03064 455 ALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEF---AGAAQSL----GAGAILVNP-----WNITEVAAS 520 (934)
T ss_pred HHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEeCC---CchHHHh----CCceEEECC-----CCHHHHHHH
Confidence 44566776 554 34665 55599998552 2222211 1122222 3 4667754 588999999
Q ss_pred HHHHHh-ChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhh
Q 035557 79 IREILE-GERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSIS 125 (129)
Q Consensus 79 i~~~l~-~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 125 (129)
|.+.++ ++ ++.+++..++.+.... .+...-++.|++.|..
T Consensus 521 I~~AL~M~~--~Er~~r~~~~~~~V~~-----~d~~~Wa~~fl~~L~~ 561 (934)
T PLN03064 521 IAQALNMPE--EEREKRHRHNFMHVTT-----HTAQEWAETFVSELND 561 (934)
T ss_pred HHHHHhCCH--HHHHHHHHHHHhhccc-----CCHHHHHHHHHHHHHH
Confidence 999887 33 2444444455555443 4555556666666653
No 172
>PLN02727 NAD kinase
Probab=66.43 E-value=14 Score=32.28 Aligned_cols=55 Identities=16% Similarity=0.119 Sum_probs=39.0
Q ss_pred cccCCcceecCCChhhHHHHHHc----CCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhC
Q 035557 10 AHEATGCFLTHCGWNSTMEARSL----GVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEG 85 (129)
Q Consensus 10 ~~~~~~~~I~hgG~~s~~eal~~----gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 85 (129)
..+++ +|+=||-||++.+... ++|++.+- .|..=-.. .++++++.+.|.+++.+
T Consensus 742 ~~~DL--VIvLGGDGTlLrAar~~~~~~iPILGIN-----------------lGrLGFLT---di~~ee~~~~L~~Il~G 799 (986)
T PLN02727 742 ERVDF--VACLGGDGVILHASNLFRGAVPPVVSFN-----------------LGSLGFLT---SHYFEDFRQDLRQVIHG 799 (986)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEe-----------------CCCccccc---cCCHHHHHHHHHHHHcC
Confidence 34677 9999999999999764 67887773 33222112 56778888899888866
Q ss_pred h
Q 035557 86 E 86 (129)
Q Consensus 86 ~ 86 (129)
+
T Consensus 800 ~ 800 (986)
T PLN02727 800 N 800 (986)
T ss_pred C
Confidence 4
No 173
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=65.57 E-value=65 Score=25.34 Aligned_cols=75 Identities=20% Similarity=0.235 Sum_probs=48.0
Q ss_pred hhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccce-ecCCCCCCccHHHHHHHHHHHHhCh
Q 035557 8 VLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLK-VPADDKGIVRREAIAHCIREILEGE 86 (129)
Q Consensus 8 iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~-~~~~~~~~~~~~~l~~~i~~~l~~~ 86 (129)
+++++++ +|. .=.-++.=|+..|+|.|++-+ ++.+...+++. |+-.. ++.. ..+.+.+...+.+.+.+.
T Consensus 282 ~l~~~dl--~Vg-~R~HsaI~al~~g~p~i~i~Y---~~K~~~l~~~~-gl~~~~~~i~---~~~~~~l~~~~~e~~~~~ 351 (385)
T COG2327 282 ILAACDL--IVG-MRLHSAIMALAFGVPAIAIAY---DPKVRGLMQDL-GLPGFAIDID---PLDAEILSAVVLERLTKL 351 (385)
T ss_pred HhccCce--EEe-ehhHHHHHHHhcCCCeEEEee---cHHHHHHHHHc-CCCcccccCC---CCchHHHHHHHHHHHhcc
Confidence 4566665 442 224577778999999999843 44455666766 76432 3333 788888888888877644
Q ss_pred hhHHHHHH
Q 035557 87 RCKEIRQN 94 (129)
Q Consensus 87 ~~~~~~~~ 94 (129)
++.+++
T Consensus 352 --~~~~~~ 357 (385)
T COG2327 352 --DELRER 357 (385)
T ss_pred --HHHHhh
Confidence 244444
No 174
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=65.07 E-value=73 Score=25.80 Aligned_cols=97 Identities=13% Similarity=0.060 Sum_probs=62.1
Q ss_pred hhcccCCcceec---CCChhhH-HHHHHcCC----CeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHH
Q 035557 8 VLAHEATGCFLT---HCGWNST-MEARSLGV----PMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCI 79 (129)
Q Consensus 8 iL~~~~~~~~I~---hgG~~s~-~eal~~gv----P~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i 79 (129)
+++.+++ ++. +-|.|.+ .|.++++. |+|+=-+ --| ...+ .-++.+++ .+.++++++|
T Consensus 378 lYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSef-----aGa--a~~l-~~AllVNP-----~d~~~~A~ai 442 (487)
T TIGR02398 378 WFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEF-----AGA--AVEL-KGALLTNP-----YDPVRMDETI 442 (487)
T ss_pred HHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEecc-----ccc--hhhc-CCCEEECC-----CCHHHHHHHH
Confidence 4566776 443 3477644 49988877 4333222 111 1333 55777754 5889999999
Q ss_pred HHHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhh
Q 035557 80 REILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSIS 125 (129)
Q Consensus 80 ~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 125 (129)
.+.|+.+. ++-+++.+++.+.... .....=.+.|++.|..
T Consensus 443 ~~AL~m~~-~Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 443 YVALAMPK-AEQQARMREMFDAVNY-----YDVQRWADEFLAAVSP 482 (487)
T ss_pred HHHHcCCH-HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhh
Confidence 99998653 2556677777777766 5666667788877764
No 175
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=64.65 E-value=11 Score=25.87 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=19.3
Q ss_pred hhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhCh
Q 035557 47 TNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEGE 86 (129)
Q Consensus 47 ~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 86 (129)
..+.+-... |+|+.+ |+++|.++|.++++..
T Consensus 103 d~~~Fe~~c-GVGV~V--------T~E~I~~~V~~~i~~~ 133 (164)
T PF04558_consen 103 DVAEFEKAC-GVGVVV--------TPEQIEAAVEKYIEEN 133 (164)
T ss_dssp -HHHHHHTT-TTT------------HHHHHHHHHHHHHHT
T ss_pred CHHHHHHHc-CCCeEE--------CHHHHHHHHHHHHHHh
Confidence 344444455 888776 8899999999999643
No 176
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=63.11 E-value=46 Score=22.77 Aligned_cols=42 Identities=12% Similarity=0.160 Sum_probs=20.1
Q ss_pred cHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHhhcCCCh
Q 035557 71 RREAIAHCIREILEGERCKEIRQNAGKWSNFAKEAVTKGGSS 112 (129)
Q Consensus 71 ~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~ 112 (129)
|+++..+.+++-+.+-..++..+......+.+.++..+|-+.
T Consensus 2 ~k~efL~~L~~~L~~lp~~e~~e~l~~Y~e~f~d~~~~G~sE 43 (181)
T PF08006_consen 2 NKNEFLNELEKYLKKLPEEEREEILEYYEEYFDDAGEEGKSE 43 (181)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhCCCCH
Confidence 445555555555432111245555555556665554444333
No 177
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=60.45 E-value=38 Score=26.31 Aligned_cols=72 Identities=13% Similarity=0.101 Sum_probs=53.5
Q ss_pred hHHhhcccCCcceecC--CChhhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHH
Q 035557 5 QLEVLAHEATGCFLTH--CGWNSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREI 82 (129)
Q Consensus 5 q~~iL~~~~~~~~I~h--gG~~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~ 82 (129)
...+|+.|+++.|.+. =|.|+++-.+..|+|+++- .+..--..+.+. |+-+....+ .++...+.++=+++
T Consensus 259 Yl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~----~~np~~~~l~~~-~ipVlf~~d---~L~~~~v~ea~rql 330 (360)
T PF07429_consen 259 YLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS----RDNPFWQDLKEQ-GIPVLFYGD---ELDEALVREAQRQL 330 (360)
T ss_pred HHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe----cCChHHHHHHhC-CCeEEeccc---cCCHHHHHHHHHHH
Confidence 3568899999776653 5789999999999999765 222233456666 777666656 89999999888877
Q ss_pred Hh
Q 035557 83 LE 84 (129)
Q Consensus 83 l~ 84 (129)
..
T Consensus 331 ~~ 332 (360)
T PF07429_consen 331 AN 332 (360)
T ss_pred hh
Confidence 64
No 178
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=59.12 E-value=33 Score=22.83 Aligned_cols=32 Identities=22% Similarity=0.663 Sum_probs=24.4
Q ss_pred HHhhcccCCcceecCCC-----hhhHHHH---HHcCCCeecc
Q 035557 6 LEVLAHEATGCFLTHCG-----WNSTMEA---RSLGVPMVAM 39 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hgG-----~~s~~ea---l~~gvP~i~~ 39 (129)
+.++..+++ +|-+-| ||+.+.| ++.|+|+|++
T Consensus 67 ~~li~~aDv--VVvrFGekYKQWNaAfDAg~a~AlgKplI~l 106 (141)
T PF11071_consen 67 RTLIEKADV--VVVRFGEKYKQWNAAFDAGYAAALGKPLITL 106 (141)
T ss_pred HHHHhhCCE--EEEEechHHHHHHHHhhHHHHHHcCCCeEEe
Confidence 345678888 888888 7887765 5678998887
No 179
>PLN02859 glutamine-tRNA ligase
Probab=58.49 E-value=31 Score=29.67 Aligned_cols=65 Identities=20% Similarity=0.255 Sum_probs=37.6
Q ss_pred HHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhChh----hHHHHHHHHHHHHHHHHHh--hcCCChHHHHHHHHHH
Q 035557 49 SKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEGER----CKEIRQNAGKWSNFAKEAV--TKGGSSDKNIDDFVAN 122 (129)
Q Consensus 49 a~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~----~~~~~~~a~~l~~~~~~~~--~~~g~~~~~~~~~~~~ 122 (129)
+.+-.+. |+|+.+ |++++.++|.++++... .+.|+.|+..+-..+++.+ +++..-...++..+-.
T Consensus 107 ~~Fek~C-GVGV~V--------T~EqI~~~V~~~i~~~k~~il~~RY~~n~g~ll~~~r~~Lkwad~~~~k~~id~~~~~ 177 (788)
T PLN02859 107 NKFEEAC-GVGVVV--------SPEDIEAAVNEVFEENKEKILEQRYRTNVGDLLGQVRKRLPWADPKIVKKLIDKKLYE 177 (788)
T ss_pred HHHHHhC-CCCEEE--------CHHHHHHHHHHHHHhhHHHHHHhcccccHHHHHHHHHhhCCCCCHHHHHHHHHHHHHH
Confidence 3344445 777666 88999999999886442 1356666666555555532 3333334455544333
No 180
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=57.47 E-value=57 Score=22.00 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=21.8
Q ss_pred CcceecCCCh------hhHHHHHHcCCCeeccc
Q 035557 14 TGCFLTHCGW------NSTMEARSLGVPMVAMP 40 (129)
Q Consensus 14 ~~~~I~hgG~------~s~~eal~~gvP~i~~P 40 (129)
.+++++|+|- +.+.+|...++|+|++.
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 4448888874 46779999999999995
No 181
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=55.37 E-value=16 Score=24.74 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=24.4
Q ss_pred hHHhhcccCCcceecCCChhhHH---HHHHcCCCeecccc
Q 035557 5 QLEVLAHEATGCFLTHCGWNSTM---EARSLGVPMVAMPQ 41 (129)
Q Consensus 5 q~~iL~~~~~~~~I~hgG~~s~~---eal~~gvP~i~~P~ 41 (129)
...++...+-..++--||.||+. |++.+++|++++|.
T Consensus 84 Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 84 RNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred HHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 33444333334466678888765 56888999999985
No 182
>PF06204 CBM_X: Putative carbohydrate binding domain ; InterPro: IPR009342 This domain is conserved in enzymes that have carbohydrates as substrate, and may be a carbohydrate-binding domain.; PDB: 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A 3ACS_A 1V7V_A 1V7X_A ....
Probab=53.48 E-value=3.1 Score=24.10 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=16.8
Q ss_pred CChHHhhcccCCcceecCCChh
Q 035557 3 CPQLEVLAHEATGCFLTHCGWN 24 (129)
Q Consensus 3 ~pq~~iL~~~~~~~~I~hgG~~ 24 (129)
.|...+|+..+.+++||+.|.|
T Consensus 25 ~P~~n~LsNg~y~~mvt~~G~G 46 (66)
T PF06204_consen 25 APWVNVLSNGSYGVMVTNSGSG 46 (66)
T ss_dssp S--EEEE-SSSEEEEEETTSBE
T ss_pred CCEEEEeeCCcEEEEEcCCCce
Confidence 5777889999999999999976
No 183
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.42 E-value=37 Score=25.06 Aligned_cols=29 Identities=10% Similarity=0.092 Sum_probs=23.0
Q ss_pred cccCCcceecCCChhhHHHHHH----cCCCeeccc
Q 035557 10 AHEATGCFLTHCGWNSTMEARS----LGVPMVAMP 40 (129)
Q Consensus 10 ~~~~~~~~I~hgG~~s~~eal~----~gvP~i~~P 40 (129)
..+++ +|+=||-||++.++. .++|++.+-
T Consensus 32 ~~~D~--vi~iGGDGT~L~a~~~~~~~~iPilGIN 64 (259)
T PRK00561 32 DGADY--LFVLGGDGFFVSTAANYNCAGCKVVGIN 64 (259)
T ss_pred CCCCE--EEEECCcHHHHHHHHHhcCCCCcEEEEe
Confidence 34566 999999999998875 467888874
No 184
>PHA02754 hypothetical protein; Provisional
Probab=50.96 E-value=34 Score=19.36 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=18.4
Q ss_pred HHHHHHhChhhHHHHHHHHHHHHHHHHH
Q 035557 78 CIREILEGERCKEIRQNAGKWSNFAKEA 105 (129)
Q Consensus 78 ~i~~~l~~~~~~~~~~~a~~l~~~~~~~ 105 (129)
.+.+++.+. .+++.++++++.+.++
T Consensus 6 Ei~k~i~eK---~Fke~MRelkD~LSe~ 30 (67)
T PHA02754 6 EIPKAIMEK---DFKEAMRELKDILSEA 30 (67)
T ss_pred HHHHHHHHh---HHHHHHHHHHHHHhhC
Confidence 344555554 8999999999998774
No 185
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=49.54 E-value=15 Score=28.25 Aligned_cols=77 Identities=17% Similarity=0.266 Sum_probs=43.4
Q ss_pred hhhHHHHHHcCCCeecccccccchhhHHH-----HHHHhcccceecC----CCCCCccHHHHHHHHHHHHhChhh-HHHH
Q 035557 23 WNSTMEARSLGVPMVAMPQWTDQSTNSKC-----VMDVWKTGLKVPA----DDKGIVRREAIAHCIREILEGERC-KEIR 92 (129)
Q Consensus 23 ~~s~~eal~~gvP~i~~P~~~dq~~na~~-----~~~~~g~g~~~~~----~~~~~~~~~~l~~~i~~~l~~~~~-~~~~ 92 (129)
++-+...+..=.|++++|+..|+..|.-. +... |..... .+-......-+...|+++.++++| +.++
T Consensus 15 ~~y~~p~~~~llp~~~~pfls~~qk~y~~f~f~~iss~---gwff~i~~re~qlk~aa~~llq~kirk~~e~~eglr~i~ 91 (401)
T PF06785_consen 15 YNYFFPVAAFLLPLVCYPFLSDSQKNYGYFVFSIISSL---GWFFAIGRREKQLKTAAGQLLQTKIRKITEKDEGLRKIR 91 (401)
T ss_pred HhhhhhHHHHHHHHhHhhhcCHHHHhcceeehHHHHHh---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 34455556667899999999988776542 2222 322211 100011223356678888887776 6677
Q ss_pred HHHHHHHHHH
Q 035557 93 QNAGKWSNFA 102 (129)
Q Consensus 93 ~~a~~l~~~~ 102 (129)
+.+.+-....
T Consensus 92 es~~e~q~e~ 101 (401)
T PF06785_consen 92 ESVEERQQES 101 (401)
T ss_pred HHHHHHHHHH
Confidence 6666544433
No 186
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=46.55 E-value=53 Score=21.92 Aligned_cols=31 Identities=23% Similarity=0.697 Sum_probs=23.1
Q ss_pred HhhcccCCcceecCCC-----hhhHHHH---HHcCCCeecc
Q 035557 7 EVLAHEATGCFLTHCG-----WNSTMEA---RSLGVPMVAM 39 (129)
Q Consensus 7 ~iL~~~~~~~~I~hgG-----~~s~~ea---l~~gvP~i~~ 39 (129)
.++..+++ +|-+-| ||+.++| ++.|+|+|++
T Consensus 71 ~li~~aDv--vVvrFGekYKQWNaAfDAg~aaAlgKplI~l 109 (144)
T TIGR03646 71 KLIEKADV--VIALFGEKYKQWNAAFDAGYAAALGKPLIIL 109 (144)
T ss_pred HHHhhCCE--EEEEechHHHHHHHHhhHHHHHHcCCCeEEe
Confidence 45677888 888877 6777765 5568888887
No 187
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=45.95 E-value=19 Score=24.42 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=21.5
Q ss_pred CcceecCCCh------hhHHHHHHcCCCeeccc
Q 035557 14 TGCFLTHCGW------NSTMEARSLGVPMVAMP 40 (129)
Q Consensus 14 ~~~~I~hgG~------~s~~eal~~gvP~i~~P 40 (129)
.+++++|+|- +.+.+|...++|+|++.
T Consensus 61 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 61 PVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred CEEEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 3448888885 46679999999999994
No 188
>PF12363 DUF3647: Phage protein ; InterPro: IPR024410 Proteins in this entry are frequently annotated as phage proteins, however there is little accompanying literature to back this up or to describe the nature of these phage proteins.
Probab=43.98 E-value=83 Score=19.99 Aligned_cols=53 Identities=19% Similarity=0.198 Sum_probs=32.4
Q ss_pred hhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHH
Q 035557 47 TNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEGERCKEIRQNAGKWSNFAKE 104 (129)
Q Consensus 47 ~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~ 104 (129)
.|...+.+.|-++..-... .++.++|.+.|.++.+++. .+.+=...+-+.+.+
T Consensus 48 ~d~~al~d~i~~a~~~~~~---~~s~~eIe~~ie~~~e~~~--~~~~l~~~vl~el~~ 100 (113)
T PF12363_consen 48 GDPVALADIIYAATAHEKK---RPSREEIEDYIEDIIEDED--DIEELFDEVLKELKK 100 (113)
T ss_pred CCHHHHHHHHHHHhcccCC---CCCHHHHHHHHHHHHhcch--hHHHHHHHHHHHHHh
Confidence 3445666666667665544 6699999999999887651 243333444444433
No 189
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=43.56 E-value=86 Score=22.20 Aligned_cols=10 Identities=30% Similarity=0.740 Sum_probs=5.4
Q ss_pred cCCCeecccc
Q 035557 32 LGVPMVAMPQ 41 (129)
Q Consensus 32 ~gvP~i~~P~ 41 (129)
.|+|.+.++.
T Consensus 97 ~gipvv~~~~ 106 (262)
T cd01147 97 TGIPVVVLDG 106 (262)
T ss_pred hCCCEEEEec
Confidence 5556555543
No 190
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=43.50 E-value=99 Score=20.73 Aligned_cols=9 Identities=33% Similarity=0.859 Sum_probs=4.2
Q ss_pred cCCCeeccc
Q 035557 32 LGVPMVAMP 40 (129)
Q Consensus 32 ~gvP~i~~P 40 (129)
.|+|.+.++
T Consensus 91 ~gIpvv~i~ 99 (186)
T cd01141 91 LGIPVLYVN 99 (186)
T ss_pred cCCCEEEeC
Confidence 444554444
No 191
>PLN02880 tyrosine decarboxylase
Probab=43.20 E-value=74 Score=25.63 Aligned_cols=69 Identities=10% Similarity=0.029 Sum_probs=41.1
Q ss_pred CcceecCCChhhHHHHHHcCC------------Ceecccccccchh-hHHHHHHHhccc----ceecCCC--CCCccHHH
Q 035557 14 TGCFLTHCGWNSTMEARSLGV------------PMVAMPQWTDQST-NSKCVMDVWKTG----LKVPADD--KGIVRREA 74 (129)
Q Consensus 14 ~~~~I~hgG~~s~~eal~~gv------------P~i~~P~~~dq~~-na~~~~~~~g~g----~~~~~~~--~~~~~~~~ 74 (129)
.+++++.||.-+.+.++.... |-+++. ..||-+ --.+....+|+| +.++.+. ...++.+.
T Consensus 147 ~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~-~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~ 225 (490)
T PLN02880 147 GGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVY-ASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPEL 225 (490)
T ss_pred CceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEE-EcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHH
Confidence 356889998877777664422 222222 245433 334455555988 3454432 34689999
Q ss_pred HHHHHHHHH
Q 035557 75 IAHCIREIL 83 (129)
Q Consensus 75 l~~~i~~~l 83 (129)
|.++|++..
T Consensus 226 L~~~i~~~~ 234 (490)
T PLN02880 226 LSEAISTDL 234 (490)
T ss_pred HHHHHHHHH
Confidence 999998653
No 192
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=42.26 E-value=67 Score=25.48 Aligned_cols=61 Identities=18% Similarity=0.297 Sum_probs=45.4
Q ss_pred cccceecCCCCCCccHHHHHHHHHHHHhChh----hHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhC
Q 035557 57 KTGLKVPADDKGIVRREAIAHCIREILEGER----CKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSISS 126 (129)
Q Consensus 57 g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~----~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 126 (129)
.+|.++.. .++..++...++.++++.. .++++.-+.+|++.+++ ..+...+..+.+.|+..
T Consensus 75 NCg~~~r~----EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~-----Dp~lsLi~~l~~klk~~ 139 (462)
T KOG2199|consen 75 NCGKRFRL----EVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKK-----DPSLSLISALYKKLKEE 139 (462)
T ss_pred hcchHHHH----HHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc-----CcchhHHHHHHHHHHHc
Confidence 47777766 5778889999999987521 24566667778887776 77888888888888763
No 193
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=41.97 E-value=24 Score=26.14 Aligned_cols=31 Identities=13% Similarity=0.209 Sum_probs=24.1
Q ss_pred hcccCCcceecCCChhhHHHHHHc----CCCeecccc
Q 035557 9 LAHEATGCFLTHCGWNSTMEARSL----GVPMVAMPQ 41 (129)
Q Consensus 9 L~~~~~~~~I~hgG~~s~~eal~~----gvP~i~~P~ 41 (129)
-..+++ +|+-||-||++.+... ++|++.++.
T Consensus 74 ~~~~D~--ii~lGGDGT~L~~~~~~~~~~~Pilgin~ 108 (285)
T PF01513_consen 74 EEGVDL--IIVLGGDGTFLRAARLFGDYDIPILGINT 108 (285)
T ss_dssp CCCSSE--EEEEESHHHHHHHHHHCTTST-EEEEEES
T ss_pred ccCCCE--EEEECCCHHHHHHHHHhccCCCcEEeecC
Confidence 456677 9999999999988764 678888864
No 194
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=41.22 E-value=19 Score=24.82 Aligned_cols=29 Identities=17% Similarity=0.425 Sum_probs=22.9
Q ss_pred ccCCcceecCCChhhHH--HHHHcCCCeecccc
Q 035557 11 HEATGCFLTHCGWNSTM--EARSLGVPMVAMPQ 41 (129)
Q Consensus 11 ~~~~~~~I~hgG~~s~~--eal~~gvP~i~~P~ 41 (129)
.||+ +|.|.|||..+ --+...+|+|+..-
T Consensus 66 ~PDv--I~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 66 VPDV--IIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred CCCE--EEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 3788 99999997554 66788999998863
No 195
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=40.46 E-value=2e+02 Score=23.26 Aligned_cols=101 Identities=13% Similarity=0.123 Sum_probs=54.5
Q ss_pred HhhcccCCcce-ecCCChhhH-HHHHHcCCC---eecccccccchhhHHHHHHHhc-ccceecCCCCCCccHHHHHHHHH
Q 035557 7 EVLAHEATGCF-LTHCGWNST-MEARSLGVP---MVAMPQWTDQSTNSKCVMDVWK-TGLKVPADDKGIVRREAIAHCIR 80 (129)
Q Consensus 7 ~iL~~~~~~~~-I~hgG~~s~-~eal~~gvP---~i~~P~~~dq~~na~~~~~~~g-~g~~~~~~~~~~~~~~~l~~~i~ 80 (129)
.+++.+++.++ -.+.|.|.+ .|.+++..+ ++++ -++--| ...+ + .++.++ ..+.++++++|.
T Consensus 368 aly~~aDv~lvTslrDGmNLva~Eyva~q~~~~GvLiL----SefaGa--a~~L-~~~al~VN-----P~d~~~~A~ai~ 435 (474)
T PF00982_consen 368 ALYRAADVALVTSLRDGMNLVAKEYVACQDDNPGVLIL----SEFAGA--AEQL-SEAALLVN-----PWDIEEVADAIH 435 (474)
T ss_dssp HHHHH-SEEEE--SSBS--HHHHHHHHHS-TS--EEEE----ETTBGG--GGT--TTS-EEE------TT-HHHHHHHHH
T ss_pred HHHHhhhhEEecchhhccCCcceEEEEEecCCCCceEe----eccCCH--HHHc-CCccEEEC-----CCChHHHHHHHH
Confidence 34455665211 125677654 477777665 2222 122221 2223 4 346675 458899999999
Q ss_pred HHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhh
Q 035557 81 EILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSIS 125 (129)
Q Consensus 81 ~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 125 (129)
+.++-+. ++-+++.+++.+.+.. .+...=.+.|+++|++
T Consensus 436 ~AL~M~~-~Er~~r~~~~~~~v~~-----~~~~~W~~~~l~~L~~ 474 (474)
T PF00982_consen 436 EALTMPP-EERKERHARLREYVRE-----HDVQWWAESFLRDLKR 474 (474)
T ss_dssp HHHT--H-HHHHHHHHHHHHHHHH-----T-HHHHHHHHHHHHHT
T ss_pred HHHcCCH-HHHHHHHHHHHHHhHh-----CCHHHHHHHHHHHhhC
Confidence 9987431 3667777777777776 6777777888888763
No 196
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.40 E-value=24 Score=26.52 Aligned_cols=29 Identities=10% Similarity=0.136 Sum_probs=23.4
Q ss_pred ccCCcceecCCChhhHHHHHHc----CCCeecccc
Q 035557 11 HEATGCFLTHCGWNSTMEARSL----GVPMVAMPQ 41 (129)
Q Consensus 11 ~~~~~~~I~hgG~~s~~eal~~----gvP~i~~P~ 41 (129)
.+++ +|+-||-||+++++.. ++|++.+..
T Consensus 57 ~~d~--vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 57 LIDL--AIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred CcCE--EEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 3566 9999999999999864 788888754
No 197
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=40.27 E-value=1.2e+02 Score=24.66 Aligned_cols=75 Identities=19% Similarity=0.298 Sum_probs=47.0
Q ss_pred Hhhc-ccCCcceecCCCh--------------hhHHHHHHcCCCeeccccccc-----chhhHHHHHHHhccc-ceecCC
Q 035557 7 EVLA-HEATGCFLTHCGW--------------NSTMEARSLGVPMVAMPQWTD-----QSTNSKCVMDVWKTG-LKVPAD 65 (129)
Q Consensus 7 ~iL~-~~~~~~~I~hgG~--------------~s~~eal~~gvP~i~~P~~~d-----q~~na~~~~~~~g~g-~~~~~~ 65 (129)
.++. |++++.+|+-.|. ..+.|.-..|+|.|++=-..| ...-+..+.+..++- +.++-.
T Consensus 139 kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~ 218 (492)
T TIGR02836 139 KVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVE 218 (492)
T ss_pred HHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHH
Confidence 3455 9999999996552 356677788999998833333 111222333322543 233333
Q ss_pred CCCCccHHHHHHHHHHHHh
Q 035557 66 DKGIVRREAIAHCIREILE 84 (129)
Q Consensus 66 ~~~~~~~~~l~~~i~~~l~ 84 (129)
.++.+++...++++|.
T Consensus 219 ---~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 219 ---SMRESDILSVLEEVLY 234 (492)
T ss_pred ---HcCHHHHHHHHHHHHh
Confidence 6888999999998874
No 198
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=40.09 E-value=26 Score=26.72 Aligned_cols=27 Identities=15% Similarity=0.242 Sum_probs=23.3
Q ss_pred ccCCcceecCCChhh---HHHHHHcCCCeecc
Q 035557 11 HEATGCFLTHCGWNS---TMEARSLGVPMVAM 39 (129)
Q Consensus 11 ~~~~~~~I~hgG~~s---~~eal~~gvP~i~~ 39 (129)
.|++ +|++||.-+ ++-+...|+|.++.
T Consensus 91 kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 91 KPDV--IFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred CCCE--EEecCchhhHHHHHHHHHcCCCEEEE
Confidence 4677 999999986 88999999999875
No 199
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=38.16 E-value=22 Score=20.72 Aligned_cols=30 Identities=27% Similarity=0.455 Sum_probs=20.2
Q ss_pred cccCCcceecCCChhhHHHHH------HcCCCeecccc
Q 035557 10 AHEATGCFLTHCGWNSTMEAR------SLGVPMVAMPQ 41 (129)
Q Consensus 10 ~~~~~~~~I~hgG~~s~~eal------~~gvP~i~~P~ 41 (129)
.++++ +|-|||..+=.+.+ ..|+|++.+|-
T Consensus 30 ~~~~~--~lvhGga~~GaD~iA~~wA~~~gv~~~~~~a 65 (71)
T PF10686_consen 30 RHPDM--VLVHGGAPKGADRIAARWARERGVPVIRFPA 65 (71)
T ss_pred hCCCE--EEEECCCCCCHHHHHHHHHHHCCCeeEEeCc
Confidence 45777 89999884333333 35888888874
No 200
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=37.96 E-value=41 Score=25.37 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=28.2
Q ss_pred hhcccCCcceecCCChhhHHHHHH----cCCCeeccccccc
Q 035557 8 VLAHEATGCFLTHCGWNSTMEARS----LGVPMVAMPQWTD 44 (129)
Q Consensus 8 iL~~~~~~~~I~hgG~~s~~eal~----~gvP~i~~P~~~d 44 (129)
.|..-++..+|.=||-+|..-+.. .++|+|.+|-..|
T Consensus 86 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTID 126 (301)
T TIGR02482 86 NLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTID 126 (301)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeeccccc
Confidence 356667778999999888766543 6999999998443
No 201
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=37.81 E-value=64 Score=16.87 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=16.2
Q ss_pred cHHHHHHHHHHHHhChhhHHHHHHHHH
Q 035557 71 RREAIAHCIREILEGERCKEIRQNAGK 97 (129)
Q Consensus 71 ~~~~l~~~i~~~l~~~~~~~~~~~a~~ 97 (129)
+.+++..+|..+.++. .++++.++.
T Consensus 1 tee~l~~Ai~~v~~g~--~S~r~AA~~ 25 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK--MSIRKAAKK 25 (45)
T ss_dssp -HHHHHHHHHHHHTTS--S-HHHHHHH
T ss_pred CHHHHHHHHHHHHhCC--CCHHHHHHH
Confidence 4678899998888662 266665554
No 202
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=37.66 E-value=1.3e+02 Score=20.37 Aligned_cols=55 Identities=11% Similarity=0.077 Sum_probs=40.1
Q ss_pred hhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHH
Q 035557 46 STNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEGERCKEIRQNAGKWSNFAKE 104 (129)
Q Consensus 46 ~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~ 104 (129)
..|..+-++. |.--++--. ..+.++|...+++=+.|+.-++.+..+.++.++..-
T Consensus 98 ~lN~~Y~~kF-GfpFvi~v~---g~~~~~Il~~l~~Rl~n~~~~E~~~a~~Ev~kIa~~ 152 (157)
T TIGR03164 98 RLNNAYRARF-GFPFIMAVK---GKTKQSILAAFEARLNNDRETEFARALREIERIARF 152 (157)
T ss_pred HHHHHHHHHC-CCeeEEeeC---CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3588888888 877666544 457888998988877776456777777787777654
No 203
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=37.38 E-value=1e+02 Score=23.79 Aligned_cols=70 Identities=17% Similarity=0.309 Sum_probs=41.3
Q ss_pred CcceecCCChhhHHHHHHc------------C-----CCeecccccccchhhHHHHHHHhccccee-cCCCCCCccHHHH
Q 035557 14 TGCFLTHCGWNSTMEARSL------------G-----VPMVAMPQWTDQSTNSKCVMDVWKTGLKV-PADDKGIVRREAI 75 (129)
Q Consensus 14 ~~~~I~hgG~~s~~eal~~------------g-----vP~i~~P~~~dq~~na~~~~~~~g~g~~~-~~~~~~~~~~~~l 75 (129)
..+++|.||..+.+-++.+ | .|.+.++-.. ++-. .+....+|+|++. ..++++.++.+++
T Consensus 104 ~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~-~Kaa~~lGlg~~~I~~~~~~~md~~~L 181 (373)
T PF00282_consen 104 AGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSI-EKAARILGLGVRKIPTDEDGRMDIEAL 181 (373)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THH-HHHHHHTTSEEEEE-BBTTSSB-HHHH
T ss_pred CceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHH-HHhcceeeeEEEEecCCcchhhhHHHh
Confidence 4568999998777766533 3 3455554322 2223 4444444888554 3334457888999
Q ss_pred HHHHHHHHhC
Q 035557 76 AHCIREILEG 85 (129)
Q Consensus 76 ~~~i~~~l~~ 85 (129)
.++|.+...+
T Consensus 182 ~~~l~~~~~~ 191 (373)
T PF00282_consen 182 EKALEKDIAN 191 (373)
T ss_dssp HHHHHHHHHT
T ss_pred hhhhcccccc
Confidence 9988876543
No 204
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=36.98 E-value=20 Score=25.54 Aligned_cols=22 Identities=5% Similarity=-0.129 Sum_probs=18.6
Q ss_pred cceecCCChhhHHHHHHcCCCe
Q 035557 15 GCFLTHCGWNSTMEARSLGVPM 36 (129)
Q Consensus 15 ~~~I~hgG~~s~~eal~~gvP~ 36 (129)
-++|+|||...++=+...|.|.
T Consensus 177 vlvVsHg~vir~ll~~~~~~~~ 198 (228)
T PRK14116 177 VIIAAHGNSLRALTKYIENISD 198 (228)
T ss_pred EEEEcChHHHHHHHHHHhCCCH
Confidence 3599999999888888888775
No 205
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=36.89 E-value=62 Score=23.82 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=36.5
Q ss_pred CCCeecccccccchhhHHHHHHHhcccceecCC-----CCCCccHHHHHHHHHHH
Q 035557 33 GVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPAD-----DKGIVRREAIAHCIREI 82 (129)
Q Consensus 33 gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~-----~~~~~~~~~l~~~i~~~ 82 (129)
.--++++|+..|-+.-|+++++. |+..+++.. .-|..++..|.-.+.+.
T Consensus 128 ~eGF~VlPY~~dD~v~arrLee~-GcaavMPl~aPIGSg~G~~n~~~l~iiie~a 181 (262)
T COG2022 128 KEGFVVLPYTTDDPVLARRLEEA-GCAAVMPLGAPIGSGLGLQNPYNLEIIIEEA 181 (262)
T ss_pred hCCCEEeeccCCCHHHHHHHHhc-CceEeccccccccCCcCcCCHHHHHHHHHhC
Confidence 44578899999999999999999 998887643 22356777666655554
No 206
>PRK13057 putative lipid kinase; Reviewed
Probab=36.84 E-value=36 Score=25.04 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=23.6
Q ss_pred cccCCcceecCCChhhHHHHH----HcCCCeecccc
Q 035557 10 AHEATGCFLTHCGWNSTMEAR----SLGVPMVAMPQ 41 (129)
Q Consensus 10 ~~~~~~~~I~hgG~~s~~eal----~~gvP~i~~P~ 41 (129)
...++ +|.-||-||+.|.+ ..++|+-++|.
T Consensus 49 ~~~d~--iiv~GGDGTv~~v~~~l~~~~~~lgiiP~ 82 (287)
T PRK13057 49 DGVDL--VIVGGGDGTLNAAAPALVETGLPLGILPL 82 (287)
T ss_pred cCCCE--EEEECchHHHHHHHHHHhcCCCcEEEECC
Confidence 34455 99999999998885 34688889997
No 207
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=36.80 E-value=46 Score=24.42 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=30.9
Q ss_pred CCCeecccccccchhhHHHHHHHhcccceecCC-----CCCCccHHHHHHHHHHH
Q 035557 33 GVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPAD-----DKGIVRREAIAHCIREI 82 (129)
Q Consensus 33 gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~-----~~~~~~~~~l~~~i~~~ 82 (129)
.--+.++|+..|-+.-|+++++. |+..++... ..|..++..|...++++
T Consensus 121 ~eGF~VlPY~~~D~v~akrL~d~-GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~ 174 (247)
T PF05690_consen 121 KEGFVVLPYCTDDPVLAKRLEDA-GCAAVMPLGSPIGSGRGIQNPYNLRIIIERA 174 (247)
T ss_dssp HTT-EEEEEE-S-HHHHHHHHHT-T-SEBEEBSSSTTT---SSTHHHHHHHHHHG
T ss_pred HCCCEEeecCCCCHHHHHHHHHC-CCCEEEecccccccCcCCCCHHHHHHHHHhc
Confidence 34467888889999999999999 998887543 23456777666555544
No 208
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=36.23 E-value=34 Score=25.26 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=22.5
Q ss_pred CCcceecCCCh-hhHHHHHHcCCCeecccc
Q 035557 13 ATGCFLTHCGW-NSTMEARSLGVPMVAMPQ 41 (129)
Q Consensus 13 ~~~~~I~hgG~-~s~~eal~~gvP~i~~P~ 41 (129)
+++.-|.++|. +..+|+...|+|.|.+-+
T Consensus 104 N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 104 NTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred CCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 33445666664 788999999999999986
No 209
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=36.10 E-value=49 Score=18.07 Aligned_cols=23 Identities=13% Similarity=0.398 Sum_probs=17.7
Q ss_pred ecCCCCCCccHHHHHHHHHHHHh
Q 035557 62 VPADDKGIVRREAIAHCIREILE 84 (129)
Q Consensus 62 ~~~~~~~~~~~~~l~~~i~~~l~ 84 (129)
++.+.+|.++.+++...++.+..
T Consensus 9 ~D~d~~G~i~~~el~~~~~~~~~ 31 (66)
T PF13499_consen 9 FDKDGDGYISKEELRRALKHLGR 31 (66)
T ss_dssp HSTTSSSEEEHHHHHHHHHHTTS
T ss_pred HcCCccCCCCHHHHHHHHHHhcc
Confidence 34455678999999999988764
No 210
>COG1422 Predicted membrane protein [Function unknown]
Probab=35.46 E-value=1.2e+02 Score=21.55 Aligned_cols=71 Identities=15% Similarity=0.121 Sum_probs=41.1
Q ss_pred hhHHHHHHcCCCeecccccccchh-hHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhChhh-HHHHHHHHHHHHH
Q 035557 24 NSTMEARSLGVPMVAMPQWTDQST-NSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEGERC-KEIRQNAGKWSNF 101 (129)
Q Consensus 24 ~s~~eal~~gvP~i~~P~~~dq~~-na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~-~~~~~~a~~l~~~ 101 (129)
+++.+++.-+.-.+..|+..-++. -.-.+... .+ .-+...+++.+.|-+. +++++.+++.++.
T Consensus 23 ~~~~~~i~~~ln~~f~P~i~~~~p~lvilV~av-----i~----------gl~~~i~~~~liD~ekm~~~qk~m~efq~e 87 (201)
T COG1422 23 SSIRDGIGGALNVVFGPLLSPLPPHLVILVAAV-----IT----------GLYITILQKLLIDQEKMKELQKMMKEFQKE 87 (201)
T ss_pred HHHHHHHHHHHHHHHhhhccccccHHHHHHHHH-----HH----------HHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 356666666666666676443322 22222211 11 2234456666666655 6899999999999
Q ss_pred HHHHhhcC
Q 035557 102 AKEAVTKG 109 (129)
Q Consensus 102 ~~~~~~~~ 109 (129)
++++-+.+
T Consensus 88 ~~eA~~~~ 95 (201)
T COG1422 88 FREAQESG 95 (201)
T ss_pred HHHHHHhC
Confidence 88875543
No 211
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=35.14 E-value=36 Score=24.88 Aligned_cols=29 Identities=34% Similarity=0.428 Sum_probs=23.1
Q ss_pred CCcceecCCCh-hhHHHHHHcCCCeecccc
Q 035557 13 ATGCFLTHCGW-NSTMEARSLGVPMVAMPQ 41 (129)
Q Consensus 13 ~~~~~I~hgG~-~s~~eal~~gvP~i~~P~ 41 (129)
+++..|.++|. +..+|+...|+|.|.+-+
T Consensus 99 N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 99 NLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred CCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 44456677774 788999999999999976
No 212
>PF15586 Imm47: Immunity protein 47
Probab=34.62 E-value=57 Score=21.01 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=29.9
Q ss_pred cccceecCCCCCCccHHHHHHHHHHHHhChhhHHHHHHHHHHHHHH
Q 035557 57 KTGLKVPADDKGIVRREAIAHCIREILEGERCKEIRQNAGKWSNFA 102 (129)
Q Consensus 57 g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~ 102 (129)
|-+..+-. ..+.+.|...|+++++.-+|.+..+-+.+|++.+
T Consensus 67 gr~~LIv~----~yd~~~I~~~i~~~i~~c~~~~W~~~~~kLsr~f 108 (116)
T PF15586_consen 67 GRHMLIVE----EYDYDEIKKTIERIIESCEGDDWDEIAEKLSRYF 108 (116)
T ss_pred ccceEEEe----cCCHHHHHHHHHHHHHHccCCCHHHHHHHHHHhe
Confidence 44555543 5788999999999997655557777777777654
No 213
>PLN02590 probable tyrosine decarboxylase
Probab=34.49 E-value=1.7e+02 Score=24.06 Aligned_cols=68 Identities=12% Similarity=0.054 Sum_probs=40.4
Q ss_pred CcceecCCChhhHHHHHHc------------CCCeecccccccchhh-HHHHHHHhccc----ceecCC--CCCCccHHH
Q 035557 14 TGCFLTHCGWNSTMEARSL------------GVPMVAMPQWTDQSTN-SKCVMDVWKTG----LKVPAD--DKGIVRREA 74 (129)
Q Consensus 14 ~~~~I~hgG~~s~~eal~~------------gvP~i~~P~~~dq~~n-a~~~~~~~g~g----~~~~~~--~~~~~~~~~ 74 (129)
.+++++.||.-+.+-++.. +.|-+++. ..||-+. -.+....+|+| +.++.+ +...++.+.
T Consensus 195 ~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy-~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~ 273 (539)
T PLN02590 195 GGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVY-GSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPES 273 (539)
T ss_pred CceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEE-ecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHH
Confidence 4568888887666665543 34443332 3566443 34555555887 223333 234689999
Q ss_pred HHHHHHHH
Q 035557 75 IAHCIREI 82 (129)
Q Consensus 75 l~~~i~~~ 82 (129)
|.++|++-
T Consensus 274 L~~~I~~d 281 (539)
T PLN02590 274 LEEAISHD 281 (539)
T ss_pred HHHHHHHH
Confidence 99999764
No 214
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=34.34 E-value=77 Score=26.19 Aligned_cols=75 Identities=15% Similarity=0.116 Sum_probs=44.8
Q ss_pred HHhhcccCCcceecCCC---hhhHHHHHHcCCCeecccccccch-hhHH----------------HHHHHhcccceecCC
Q 035557 6 LEVLAHEATGCFLTHCG---WNSTMEARSLGVPMVAMPQWTDQS-TNSK----------------CVMDVWKTGLKVPAD 65 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hgG---~~s~~eal~~gvP~i~~P~~~dq~-~na~----------------~~~~~~g~g~~~~~~ 65 (129)
..+|+.+.+ ||--|. .-+=+|||++|+|.|--=+...+. .|.. +++...|-=.+..-+
T Consensus 336 ~~lL~~akv--fiGlGfP~EgPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhVytVd 413 (559)
T PF15024_consen 336 QQLLRKAKV--FIGLGFPYEGPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHVYTVD 413 (559)
T ss_pred HHHHHhhhE--eeecCCCCCCCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCeEEEEc
Confidence 346777777 887665 358899999999886542211111 1211 233221322233323
Q ss_pred CCCCccHHHHHHHHHHHHhC
Q 035557 66 DKGIVRREAIAHCIREILEG 85 (129)
Q Consensus 66 ~~~~~~~~~l~~~i~~~l~~ 85 (129)
.-+.+++.++|+++|..
T Consensus 414 ---~~n~~~v~~Avk~il~~ 430 (559)
T PF15024_consen 414 ---INNSTEVEAAVKAILAT 430 (559)
T ss_pred ---CCCHHHHHHHHHHHHhc
Confidence 45788999999999865
No 215
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=33.79 E-value=38 Score=25.21 Aligned_cols=28 Identities=11% Similarity=0.399 Sum_probs=24.5
Q ss_pred cccCCcceecCCChhhHHHHHHcCCCeecc
Q 035557 10 AHEATGCFLTHCGWNSTMEARSLGVPMVAM 39 (129)
Q Consensus 10 ~~~~~~~~I~hgG~~s~~eal~~gvP~i~~ 39 (129)
..||+ +|+.++..+..-|-..|+|.+.+
T Consensus 92 ~~pDl--Vi~d~~~~~~~aA~~~~iP~i~i 119 (321)
T TIGR00661 92 YNPDL--IISDFEYSTVVAAKLLKIPVICI 119 (321)
T ss_pred cCCCE--EEECCchHHHHHHHhcCCCEEEE
Confidence 34677 99999999999999999999966
No 216
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=33.47 E-value=66 Score=22.28 Aligned_cols=33 Identities=12% Similarity=-0.051 Sum_probs=22.8
Q ss_pred HHHHcCCCeecccccc----cchhhHHHHHHHhcccce
Q 035557 28 EARSLGVPMVAMPQWT----DQSTNSKCVMDVWKTGLK 61 (129)
Q Consensus 28 eal~~gvP~i~~P~~~----dq~~na~~~~~~~g~g~~ 61 (129)
.++..++|++++|... -+..|...+.+. |+-+.
T Consensus 107 ~~L~~~~pv~i~P~~m~~~~~~~~Nl~~L~~~-G~~ii 143 (181)
T TIGR00421 107 VCLKERRKLVLVPRETPLNSIHLENMLRLSRM-GAIIL 143 (181)
T ss_pred HHHhcCCCEEEEeCCCcCCHHHHHHHHHHHHC-CCEEE
Confidence 3678999999999532 235577777776 66654
No 217
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=33.38 E-value=1.6e+02 Score=20.27 Aligned_cols=12 Identities=25% Similarity=0.066 Sum_probs=5.4
Q ss_pred HHHHcCCCeecc
Q 035557 28 EARSLGVPMVAM 39 (129)
Q Consensus 28 eal~~gvP~i~~ 39 (129)
|.+..=.|=+++
T Consensus 54 E~i~~l~PDlIi 65 (238)
T PF01497_consen 54 EAILALKPDLII 65 (238)
T ss_dssp HHHHHT--SEEE
T ss_pred HHHHhCCCCEEE
Confidence 555555555555
No 218
>PRK13059 putative lipid kinase; Reviewed
Probab=32.82 E-value=45 Score=24.70 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=20.9
Q ss_pred ceecCCChhhHHHHH---H---cCCCeecccc
Q 035557 16 CFLTHCGWNSTMEAR---S---LGVPMVAMPQ 41 (129)
Q Consensus 16 ~~I~hgG~~s~~eal---~---~gvP~i~~P~ 41 (129)
.+|.-||-||+.|.+ . .++|+-++|.
T Consensus 59 ~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 59 YILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred EEEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 399999999988874 2 3588888997
No 219
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=32.82 E-value=1.1e+02 Score=20.14 Aligned_cols=31 Identities=23% Similarity=0.097 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 035557 93 QNAGKWSNFAKEAVTKGGSSDKNIDDFVANS 123 (129)
Q Consensus 93 ~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 123 (129)
.-++.++..+++.+.+|.|..+.++-+++..
T Consensus 57 ~iA~dmR~~Vr~~i~~G~Sd~eI~~~~v~RY 87 (126)
T TIGR03147 57 PIAYDLRHEVYSMVNEGKSNQQIIDFMTARF 87 (126)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 3455666666777777888877777777654
No 220
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=32.25 E-value=1.7e+02 Score=20.05 Aligned_cols=55 Identities=7% Similarity=0.006 Sum_probs=39.6
Q ss_pred hhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHH
Q 035557 46 STNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEGERCKEIRQNAGKWSNFAKE 104 (129)
Q Consensus 46 ~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~ 104 (129)
..|+.+-++. |.=-++--. ..+.++|...+++=+.|+.-.+++..+.++.++..-
T Consensus 103 ~lN~~Y~~kF-GfpFii~v~---g~s~~~IL~~l~~Rl~n~~e~E~~~al~Ev~kIa~l 157 (166)
T PRK13798 103 AGNRAYEEKF-GFVFLICAT---GRSADEMLAALQQRLHNDPETERKVVREELAKINRL 157 (166)
T ss_pred HHHHHHHHhC-CCeEEEeeC---CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 3588888887 766666443 457888888888777665446788888888877654
No 221
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=32.22 E-value=7.5 Score=17.96 Aligned_cols=17 Identities=18% Similarity=0.468 Sum_probs=11.5
Q ss_pred ChhhHHHHHHcCCCeec
Q 035557 22 GWNSTMEARSLGVPMVA 38 (129)
Q Consensus 22 G~~s~~eal~~gvP~i~ 38 (129)
|.|+++-.++.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 56777788887777653
No 222
>PRK13463 phosphatase PhoE; Provisional
Probab=31.94 E-value=29 Score=24.14 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=19.0
Q ss_pred cceecCCChhhHHHHHHcCCCee
Q 035557 15 GCFLTHCGWNSTMEARSLGVPMV 37 (129)
Q Consensus 15 ~~~I~hgG~~s~~eal~~gvP~i 37 (129)
-++|+|||...++-+...|.|.-
T Consensus 146 vlvVsHg~~ir~~~~~~~~~~~~ 168 (203)
T PRK13463 146 ILIVSHAAAAKLLVGHFAGIEIE 168 (203)
T ss_pred EEEEeChHHHHHHHHHHhCCCHH
Confidence 35999999999888888887764
No 223
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=31.75 E-value=35 Score=23.61 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=18.3
Q ss_pred ceecCCChhhHHHHHHcCCCeec
Q 035557 16 CFLTHCGWNSTMEARSLGVPMVA 38 (129)
Q Consensus 16 ~~I~hgG~~s~~eal~~gvP~i~ 38 (129)
++|+|||....+=+...|.|.-.
T Consensus 148 liVsHg~~ir~ll~~~lg~~~~~ 170 (204)
T TIGR03848 148 VACSHGDVIKSVLADALGMHLDL 170 (204)
T ss_pred EEEeCChHHHHHHHHHhCCCHHH
Confidence 59999999888777778877643
No 224
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=31.66 E-value=90 Score=23.22 Aligned_cols=47 Identities=13% Similarity=0.179 Sum_probs=33.1
Q ss_pred CCCeecccccccchhhHHHHHHHhcccceecCC-----CCCCccHHHHHHHHH
Q 035557 33 GVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPAD-----DKGIVRREAIAHCIR 80 (129)
Q Consensus 33 gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~-----~~~~~~~~~l~~~i~ 80 (129)
.--+.++|+..|-+.-|+++++. |+..++... ..|-.++..|.-.++
T Consensus 135 ~eGF~VlPY~~~D~v~a~rLed~-Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e 186 (267)
T CHL00162 135 KKGFTVLPYINADPMLAKHLEDI-GCATVMPLGSPIGSGQGLQNLLNLQIIIE 186 (267)
T ss_pred HCCCEEeecCCCCHHHHHHHHHc-CCeEEeeccCcccCCCCCCCHHHHHHHHH
Confidence 34467889999999999999999 998877543 223456665554443
No 225
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=31.58 E-value=45 Score=22.44 Aligned_cols=27 Identities=30% Similarity=0.381 Sum_probs=20.7
Q ss_pred CcceecCCCh------hhHHHHHHcCCCeeccc
Q 035557 14 TGCFLTHCGW------NSTMEARSLGVPMVAMP 40 (129)
Q Consensus 14 ~~~~I~hgG~------~s~~eal~~gvP~i~~P 40 (129)
.++++++.|- +.+.+|...++|+|++.
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEe
Confidence 4447777664 46778999999999995
No 226
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=31.23 E-value=41 Score=24.79 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=22.7
Q ss_pred CCcceecCCCh-hhHHHHHHcCCCeecccc
Q 035557 13 ATGCFLTHCGW-NSTMEARSLGVPMVAMPQ 41 (129)
Q Consensus 13 ~~~~~I~hgG~-~s~~eal~~gvP~i~~P~ 41 (129)
+++.-|.++|. +..+|+...|+|.|.+-+
T Consensus 99 N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 128 (253)
T PRK13935 99 NLGTDVLYSGTVSGALEGAMMGVPSIAISS 128 (253)
T ss_pred CCCcCCcccHhHHHHHHHHhcCCCeEEEEc
Confidence 34445667774 788899999999999986
No 227
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=31.21 E-value=43 Score=24.76 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=22.4
Q ss_pred CCcceecCCCh-hhHHHHHHcCCCeecccc
Q 035557 13 ATGCFLTHCGW-NSTMEARSLGVPMVAMPQ 41 (129)
Q Consensus 13 ~~~~~I~hgG~-~s~~eal~~gvP~i~~P~ 41 (129)
+++..|.++|. +..+|+..+|+|.|.+-+
T Consensus 100 N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 100 NSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred CCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 34445666664 778899999999999986
No 228
>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=30.81 E-value=13 Score=29.33 Aligned_cols=36 Identities=28% Similarity=0.501 Sum_probs=27.8
Q ss_pred hhHHHHHHcCCCeeccccc-ccchhhHHHHHHHhccccee
Q 035557 24 NSTMEARSLGVPMVAMPQW-TDQSTNSKCVMDVWKTGLKV 62 (129)
Q Consensus 24 ~s~~eal~~gvP~i~~P~~-~dq~~na~~~~~~~g~g~~~ 62 (129)
+..+|. .+|.|+-+-|-. ..|.++|+ +++|-+|.++
T Consensus 168 ~~~a~t-lcGSplYMAPEV~~~~~YdAK--ADLWSiG~Il 204 (429)
T KOG0595|consen 168 GSMAET-LCGSPLYMAPEVIMSQQYDAK--ADLWSIGTIL 204 (429)
T ss_pred hhHHHH-hhCCccccCHHHHHhccccch--hhHHHHHHHH
Confidence 444554 479999999964 48888988 7888888776
No 229
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.69 E-value=1.7e+02 Score=19.97 Aligned_cols=33 Identities=9% Similarity=0.282 Sum_probs=21.3
Q ss_pred cHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHH
Q 035557 71 RREAIAHCIREILEGERCKEIRQNAGKWSNFAKEA 105 (129)
Q Consensus 71 ~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~ 105 (129)
..+.|.+.+..++.+. -+-.-.+.++++.+.++
T Consensus 102 eke~~~~sl~dL~~d~--PkT~vA~~rfKk~~~K~ 134 (158)
T PF10083_consen 102 EKEQFKESLPDLTKDT--PKTKVAATRFKKILSKA 134 (158)
T ss_pred HHHHHHhhhHHHhhcC--CccHHHHHHHHHHHHHH
Confidence 4567888888877542 14455566777777665
No 230
>PRK13054 lipid kinase; Reviewed
Probab=30.65 E-value=55 Score=24.27 Aligned_cols=27 Identities=11% Similarity=0.127 Sum_probs=21.4
Q ss_pred cceecCCChhhHHHHHHc------C--CCeecccc
Q 035557 15 GCFLTHCGWNSTMEARSL------G--VPMVAMPQ 41 (129)
Q Consensus 15 ~~~I~hgG~~s~~eal~~------g--vP~i~~P~ 41 (129)
..+|.-||-||+.|.+.. + +|+-++|.
T Consensus 58 d~vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 58 ATVIAGGGDGTINEVATALAQLEGDARPALGILPL 92 (300)
T ss_pred CEEEEECCccHHHHHHHHHHhhccCCCCcEEEEeC
Confidence 349999999999988744 2 58888897
No 231
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=30.65 E-value=53 Score=21.49 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=21.2
Q ss_pred CcceecCCCh------hhHHHHHHcCCCeecccc
Q 035557 14 TGCFLTHCGW------NSTMEARSLGVPMVAMPQ 41 (129)
Q Consensus 14 ~~~~I~hgG~------~s~~eal~~gvP~i~~P~ 41 (129)
..++++|+|. +.+.++...++|+|++.-
T Consensus 60 ~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 60 PGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 3348888663 467788899999999954
No 232
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=30.51 E-value=33 Score=24.42 Aligned_cols=22 Identities=9% Similarity=-0.203 Sum_probs=18.2
Q ss_pred cceecCCChhhHHHHHHcCCCe
Q 035557 15 GCFLTHCGWNSTMEARSLGVPM 36 (129)
Q Consensus 15 ~~~I~hgG~~s~~eal~~gvP~ 36 (129)
-++|+|||...++=+...|+|.
T Consensus 177 vlvVsHg~vir~l~~~~~~~~~ 198 (228)
T PRK14119 177 VLVSAHGNSIRALIKYLEDVSD 198 (228)
T ss_pred EEEEeChHHHHHHHHHHhCCCH
Confidence 3599999998888888888775
No 233
>PRK11914 diacylglycerol kinase; Reviewed
Probab=30.47 E-value=51 Score=24.45 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=23.0
Q ss_pred cCCcceecCCChhhHHHHH----HcCCCeecccc
Q 035557 12 EATGCFLTHCGWNSTMEAR----SLGVPMVAMPQ 41 (129)
Q Consensus 12 ~~~~~~I~hgG~~s~~eal----~~gvP~i~~P~ 41 (129)
.++ +|.-||-||+.|++ ..++|+-++|.
T Consensus 65 ~d~--vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 65 TDA--LVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred CCE--EEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 455 99999999999887 34788889997
No 234
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=30.35 E-value=1.3e+02 Score=19.85 Aligned_cols=31 Identities=16% Similarity=-0.006 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 035557 93 QNAGKWSNFAKEAVTKGGSSDKNIDDFVANS 123 (129)
Q Consensus 93 ~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 123 (129)
.-|+.++..+++.+.+|.|..+.++.+++..
T Consensus 57 ~iA~dmR~~Vr~~i~~G~sd~eI~~~~v~RY 87 (126)
T PRK10144 57 PVAVSMRHQVYSMVAEGKSEVEIIGWMTERY 87 (126)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 3455666666667777888888887777654
No 235
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=30.29 E-value=1.7e+02 Score=23.75 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=49.7
Q ss_pred hcccCCcceecCCChh--------------hHHHHHHcCCCeecc-----cccccchhhHHHHHHHhccccee-cCCCCC
Q 035557 9 LAHEATGCFLTHCGWN--------------STMEARSLGVPMVAM-----PQWTDQSTNSKCVMDVWKTGLKV-PADDKG 68 (129)
Q Consensus 9 L~~~~~~~~I~hgG~~--------------s~~eal~~gvP~i~~-----P~~~dq~~na~~~~~~~g~g~~~-~~~~~~ 68 (129)
=.|+.++.+||--|.- ++.|.-..|+|+|++ |...+-..-+..+++..++-+.. +-.
T Consensus 142 ~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~--- 218 (492)
T PF09547_consen 142 TDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELKEIGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCE--- 218 (492)
T ss_pred ccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehH---
Confidence 3678888899988853 677888889999987 44444444444444433665443 222
Q ss_pred CccHHHHHHHHHHHHh
Q 035557 69 IVRREAIAHCIREILE 84 (129)
Q Consensus 69 ~~~~~~l~~~i~~~l~ 84 (129)
.++.+++...++++|.
T Consensus 219 ~l~~~DI~~Il~~vLy 234 (492)
T PF09547_consen 219 QLREEDITRILEEVLY 234 (492)
T ss_pred HcCHHHHHHHHHHHHh
Confidence 6888999999888864
No 236
>PF09349 OHCU_decarbox: OHCU decarboxylase; InterPro: IPR018020 The proteins in this entry are OHCU decarboxylase, an enzyme of the purine catabolism that catalyses the conversion of OHCU into S(+)-allantoin []; it is the third step of the conversion of uric acid (a purine derivative) to allantoin. Step one is catalysed by urate oxidase (IPR002042 from INTERPRO) and step two is catalysed by hydroxyisourate hydrolase (IPR000895 from INTERPRO). ; PDB: 3O7I_B 3O7H_B 3O7J_A 3O7K_A 2Q37_A 2O70_B 2O73_C 2O74_C 2O8I_A.
Probab=29.62 E-value=1.8e+02 Score=19.58 Aligned_cols=56 Identities=13% Similarity=0.055 Sum_probs=35.4
Q ss_pred hhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHH
Q 035557 46 STNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEGERCKEIRQNAGKWSNFAKEA 105 (129)
Q Consensus 46 ~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~ 105 (129)
..|..+-.+. |.=-++--. ..+.++|...+++=|.|+.-.+.+..+.++.++.+..
T Consensus 101 ~lN~~Y~~kF-Gf~Fvi~~~---g~s~~~Il~~l~~Rl~n~~~~E~~~A~~Ev~kIa~~R 156 (159)
T PF09349_consen 101 ALNQAYEEKF-GFPFVICAR---GRSAAEILAALERRLNNDPEEELRIALEEVAKIARLR 156 (159)
T ss_dssp HHHHHHHHHH-SS-----GT---T--HHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCceEeecC---CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 3588888888 877666544 5677888888887777765567888888888776653
No 237
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=29.59 E-value=69 Score=24.43 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=27.2
Q ss_pred hcccCCcceecCCChhhHHHHHH---cCCCeecccccc
Q 035557 9 LAHEATGCFLTHCGWNSTMEARS---LGVPMVAMPQWT 43 (129)
Q Consensus 9 L~~~~~~~~I~hgG~~s~~eal~---~gvP~i~~P~~~ 43 (129)
|..-++..+|.=||-+|..-+.. .|+|+|.+|-..
T Consensus 90 l~~~~Id~LivIGGdgS~~~a~~L~~~gi~vigiPkTI 127 (324)
T TIGR02483 90 LKELGLDALIAIGGDGTLGIARRLADKGLPVVGVPKTI 127 (324)
T ss_pred HHHcCCCEEEEECCchHHHHHHHHHhcCCCEEeecccc
Confidence 45567777999999888866644 599999999843
No 238
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=29.46 E-value=2.4e+02 Score=22.94 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=37.5
Q ss_pred hhHHHHHHcCCCeecccccc--cchhhHHH--HHHHhcccceecCCCCCCccHHHHHHHHHHHHh
Q 035557 24 NSTMEARSLGVPMVAMPQWT--DQSTNSKC--VMDVWKTGLKVPADDKGIVRREAIAHCIREILE 84 (129)
Q Consensus 24 ~s~~eal~~gvP~i~~P~~~--dq~~na~~--~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~ 84 (129)
-|=++++.+|++-|+.|..+ |-...... .... |.|..+.. .+++.+..++++.+.
T Consensus 383 L~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~-gtGf~f~~-----~~~~~l~~al~rA~~ 441 (487)
T COG0297 383 LTQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGV-GTGFLFLQ-----TNPDHLANALRRALV 441 (487)
T ss_pred HHHHHHHHcCCcceEcccCCccceecCccchhccCc-eeEEEEec-----CCHHHHHHHHHHHHH
Confidence 45678999999888877743 33221111 4556 78888864 499999999998764
No 239
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=29.36 E-value=1.1e+02 Score=24.00 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=21.2
Q ss_pred CcceecCCCh------hhHHHHHHcCCCeecc
Q 035557 14 TGCFLTHCGW------NSTMEARSLGVPMVAM 39 (129)
Q Consensus 14 ~~~~I~hgG~------~s~~eal~~gvP~i~~ 39 (129)
.+++++++|- +.+.+|...++|+|++
T Consensus 64 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 64 PVAVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CEEEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 4458888874 4677999999999999
No 240
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=29.28 E-value=3.1e+02 Score=22.25 Aligned_cols=58 Identities=12% Similarity=0.105 Sum_probs=40.9
Q ss_pred cccceecCCCCCCccHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhh
Q 035557 57 KTGLKVPADDKGIVRREAIAHCIREILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSIS 125 (129)
Q Consensus 57 g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 125 (129)
+-++.++ ..+.+.+.++|.+.++-+. ++-+++.+++.+.... .....=.+.|++.|..
T Consensus 396 ~~AllVN-----P~d~~~~A~Ai~~AL~Mp~-~Er~~R~~~l~~~v~~-----~dv~~W~~~fL~~L~~ 453 (474)
T PRK10117 396 TSALIVN-----PYDRDEVAAALDRALTMPL-AERISRHAEMLDVIVK-----NDINHWQECFISDLKQ 453 (474)
T ss_pred CCCeEEC-----CCCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHhhh-----CCHHHHHHHHHHHHHH
Confidence 4466665 4588999999999987542 2566677777777766 5666667777777764
No 241
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=29.28 E-value=68 Score=24.38 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=27.7
Q ss_pred hhcccCCcceecCCChhhHHHHHH---cCCCeecccccc
Q 035557 8 VLAHEATGCFLTHCGWNSTMEARS---LGVPMVAMPQWT 43 (129)
Q Consensus 8 iL~~~~~~~~I~hgG~~s~~eal~---~gvP~i~~P~~~ 43 (129)
.|..-++..+|.=||-+|..-+.. +|+|+|.+|-.-
T Consensus 87 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~i~vigiPkTI 125 (317)
T cd00763 87 QLKKHGIDALVVIGGDGSYMGAMRLTEHGFPCVGLPGTI 125 (317)
T ss_pred HHHHcCCCEEEEECCchHHHHHHHHHHcCCCEEEecccc
Confidence 356667778999999888766644 599999999743
No 242
>PRK03202 6-phosphofructokinase; Provisional
Probab=28.84 E-value=70 Score=24.36 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=27.6
Q ss_pred hcccCCcceecCCChhhHHHHHH---cCCCeeccccccc
Q 035557 9 LAHEATGCFLTHCGWNSTMEARS---LGVPMVAMPQWTD 44 (129)
Q Consensus 9 L~~~~~~~~I~hgG~~s~~eal~---~gvP~i~~P~~~d 44 (129)
|..-++..+|.=||-+|..-+.. +++|+|.+|-..|
T Consensus 89 l~~~~Id~Li~IGGd~s~~~a~~L~e~~i~vigiPkTID 127 (320)
T PRK03202 89 LKKLGIDALVVIGGDGSYMGAKRLTEHGIPVIGLPGTID 127 (320)
T ss_pred HHHcCCCEEEEeCChHHHHHHHHHHhcCCcEEEeccccc
Confidence 45556777999999888876644 5999999998543
No 243
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=28.55 E-value=58 Score=23.55 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=24.1
Q ss_pred HHhhcccCCcceecCCChhhHHHHHHcCCCeecc
Q 035557 6 LEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAM 39 (129)
Q Consensus 6 ~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~ 39 (129)
..++.++++ +|+.-. +.++=|.+.|+|++++
T Consensus 193 ~~li~~~~l--~I~~Ds-g~~HlA~a~~~p~i~l 223 (279)
T cd03789 193 AALLARADL--VVTNDS-GPMHLAAALGTPTVAL 223 (279)
T ss_pred HHHHHhCCE--EEeeCC-HHHHHHHHcCCCEEEE
Confidence 456788888 888854 6666677899999988
No 244
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=28.38 E-value=56 Score=24.52 Aligned_cols=39 Identities=21% Similarity=0.377 Sum_probs=30.7
Q ss_pred CCChhhHH--HHHHcCCCeecccccccchhhHHH-HHHHhccc
Q 035557 20 HCGWNSTM--EARSLGVPMVAMPQWTDQSTNSKC-VMDVWKTG 59 (129)
Q Consensus 20 hgG~~s~~--eal~~gvP~i~~P~~~dq~~na~~-~~~~~g~g 59 (129)
=||||+++ -|-.+|+-++.+-+..+|..+++. +... |+.
T Consensus 80 GCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~-gl~ 121 (283)
T COG2230 80 GCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAAR-GLE 121 (283)
T ss_pred CCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHc-CCC
Confidence 36887655 455669999999999999999987 6666 887
No 245
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=28.05 E-value=3e+02 Score=21.58 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=62.7
Q ss_pred ChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccccchhhHHHH-HHH--hcccceecCCCCCCccHHHHHHHHH
Q 035557 4 PQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWTDQSTNSKCV-MDV--WKTGLKVPADDKGIVRREAIAHCIR 80 (129)
Q Consensus 4 pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~dq~~na~~~-~~~--~g~g~~~~~~~~~~~~~~~l~~~i~ 80 (129)
+-.++|...++ +||-= .+...|.+...+|++..=...+|....+-+ .+. +.=|.+ .-+.+++.++|.
T Consensus 279 di~dll~~sDi--LITDy-SSv~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~-------~~~~~~li~ai~ 348 (388)
T COG1887 279 DINDLLLVSDI--LITDY-SSVIFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEV-------VETQEELIDAIK 348 (388)
T ss_pred hHHHHHhhhCE--EEeec-hHHHHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCccc-------cccHHHHHHHHH
Confidence 44678888888 88863 356779999999999996666665222111 100 012222 235677888888
Q ss_pred HHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 035557 81 EILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFV 120 (129)
Q Consensus 81 ~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 120 (129)
..+.++ +.+.++.+...+.+... .+|.++.+.+..+.
T Consensus 349 ~~~~~~--~~~~~k~~~~~~~~~~~-~dg~ss~ri~~~i~ 385 (388)
T COG1887 349 PYDEDG--NYDLEKLRVFNDKFNSY-EDGRSSERILKLIF 385 (388)
T ss_pred hhhccc--chhHHHHHHHHHhhccc-ccccHHHHHHHHHh
Confidence 777644 24555555556665554 56666665555443
No 246
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=27.93 E-value=37 Score=22.71 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=17.7
Q ss_pred cceecCCChhhHHHHHHcCCCe
Q 035557 15 GCFLTHCGWNSTMEARSLGVPM 36 (129)
Q Consensus 15 ~~~I~hgG~~s~~eal~~gvP~ 36 (129)
-++|+|||...++-+...|.|.
T Consensus 140 vlvVsHg~~i~~l~~~~~~~~~ 161 (177)
T TIGR03162 140 VLIVTHGGVIRALLAHLLGLPL 161 (177)
T ss_pred EEEEECHHHHHHHHHHHhCCCH
Confidence 3599999998888777778764
No 247
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=27.86 E-value=22 Score=27.52 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=13.0
Q ss_pred eecCC--------ChhhHHH----HHHcCCCeecc
Q 035557 17 FLTHC--------GWNSTME----ARSLGVPMVAM 39 (129)
Q Consensus 17 ~I~hg--------G~~s~~e----al~~gvP~i~~ 39 (129)
++||| |+||.+. +...|+..-++
T Consensus 163 ILTHcnaG~LAt~~~gTal~vi~~A~~~gk~~~V~ 197 (356)
T PRK08334 163 VLTHCNAGSLATVHLGTVGAVLRVMHKDGTLKLLW 197 (356)
T ss_pred EEEecCcchhhhcccchHHHHHHHHHHcCCeEEEE
Confidence 56666 6666544 44556655433
No 248
>PRK14071 6-phosphofructokinase; Provisional
Probab=27.79 E-value=74 Score=24.64 Aligned_cols=36 Identities=17% Similarity=0.126 Sum_probs=26.8
Q ss_pred hhcccCCcceecCCChhhHHHHHH----cCCCeecccccc
Q 035557 8 VLAHEATGCFLTHCGWNSTMEARS----LGVPMVAMPQWT 43 (129)
Q Consensus 8 iL~~~~~~~~I~hgG~~s~~eal~----~gvP~i~~P~~~ 43 (129)
.|..-++..+|.=||-+|..-+.. .++|+|.+|-..
T Consensus 102 ~l~~~~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkTI 141 (360)
T PRK14071 102 GYHSLGLDALIGIGGDGSLAILRRLAQQGGINLVGIPKTI 141 (360)
T ss_pred HHHHcCCCEEEEECChhHHHHHHHHHHhcCCcEEEecccc
Confidence 345567778999999888754432 499999999843
No 249
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=27.78 E-value=1.8e+02 Score=20.03 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=30.7
Q ss_pred CCCeecccccc----cc---hhhHHHHHHHhcccceecCC---------CCCCccHHHHHHHHHHHHh
Q 035557 33 GVPMVAMPQWT----DQ---STNSKCVMDVWKTGLKVPAD---------DKGIVRREAIAHCIREILE 84 (129)
Q Consensus 33 gvP~i~~P~~~----dq---~~na~~~~~~~g~g~~~~~~---------~~~~~~~~~l~~~i~~~l~ 84 (129)
++|++++|-.. .. ..|..++.+. |+-++-... ...-.+.++|.+.+.+.+.
T Consensus 113 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~-G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 113 TTPKLIAPAMNTKMYENPATQRNLKTLKED-GVQEIEPKEGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred CCCEEEEECCCHHHhcCHHHHHHHHHHHHC-CCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 89999999632 33 4567777766 654433221 1224566777777766553
No 250
>PF07583 PSCyt2: Protein of unknown function (DUF1549); InterPro: IPR011444 The function is not known. It is found associated with IPR022655 from INTERPRO. It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=27.72 E-value=2.3e+02 Score=20.19 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=35.5
Q ss_pred ccHHHHHHHHHHHHhChhhHHHHHHHH-HHHHHHHHHhhcCC-------ChHHHHHHHHHHHhhCCC
Q 035557 70 VRREAIAHCIREILEGERCKEIRQNAG-KWSNFAKEAVTKGG-------SSDKNIDDFVANSISSKS 128 (129)
Q Consensus 70 ~~~~~l~~~i~~~l~~~~~~~~~~~a~-~l~~~~~~~~~~~g-------~~~~~~~~~~~~l~~~~~ 128 (129)
.+++.-...|.++|.++ .|.++.. .|.+.++.+...+. ....--+-+.+.+..++.
T Consensus 52 ~~~~kr~~lVd~LL~sp---~y~e~wa~~W~D~lr~~~~~~~~~d~~~~~~~~~r~wl~~a~~~n~P 115 (208)
T PF07583_consen 52 PSPDKREKLVDRLLASP---EYAERWARHWLDLLRYADSGGYESDNRRPNAWPYRDWLIDAFNENKP 115 (208)
T ss_pred CChhHHHHHHHHHHCCc---HHHHHHHHHHHHHHccCCCCCCcccccccchhhHHHHHHHHHHcCCC
Confidence 45677888899999988 7877766 68888776544332 223333445555555443
No 251
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=27.71 E-value=37 Score=23.44 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=18.5
Q ss_pred cceecCCChhhHHHHHHcCCCee
Q 035557 15 GCFLTHCGWNSTMEARSLGVPMV 37 (129)
Q Consensus 15 ~~~I~hgG~~s~~eal~~gvP~i 37 (129)
-++|+|||...++-+...|.|.-
T Consensus 144 iliVsHg~~i~~l~~~~~~~~~~ 166 (199)
T PRK15004 144 LLIVSHQGVLSLLIARLLGMPAE 166 (199)
T ss_pred EEEEcChHHHHHHHHHHhCCCHH
Confidence 35999999988888888887763
No 252
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=27.46 E-value=38 Score=24.13 Aligned_cols=22 Identities=9% Similarity=-0.017 Sum_probs=17.8
Q ss_pred cceecCCChhhHHHHHHcCCCe
Q 035557 15 GCFLTHCGWNSTMEARSLGVPM 36 (129)
Q Consensus 15 ~~~I~hgG~~s~~eal~~gvP~ 36 (129)
-++|+|||...++=+...|.|.
T Consensus 176 vlvVsHggvir~ll~~~l~~~~ 197 (227)
T PRK14118 176 VLVAAHGNSLRALAKHIEGISD 197 (227)
T ss_pred EEEEeCHHHHHHHHHHHhCCCH
Confidence 3599999988888777778776
No 253
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=26.98 E-value=46 Score=21.24 Aligned_cols=27 Identities=15% Similarity=0.043 Sum_probs=20.4
Q ss_pred ceecCCChhhHHHHHHc----C-----CCeeccccc
Q 035557 16 CFLTHCGWNSTMEARSL----G-----VPMVAMPQW 42 (129)
Q Consensus 16 ~~I~hgG~~s~~eal~~----g-----vP~i~~P~~ 42 (129)
.+|.-||-||+.|.+.. . .|+.++|..
T Consensus 52 ~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~G 87 (124)
T smart00046 52 RVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLG 87 (124)
T ss_pred EEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCC
Confidence 48999999999988642 2 577777863
No 254
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=26.89 E-value=52 Score=24.14 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=19.4
Q ss_pred ceecCCChhhHHHHHHc-----CCCeec-ccc
Q 035557 16 CFLTHCGWNSTMEARSL-----GVPMVA-MPQ 41 (129)
Q Consensus 16 ~~I~hgG~~s~~eal~~-----gvP~i~-~P~ 41 (129)
.+|.-||-||+.|++.. ..|.+. +|.
T Consensus 60 ~ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 60 TVIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred EEEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 39999999999996542 345555 786
No 255
>PF09884 DUF2111: Uncharacterized protein conserved in archaea (DUF2111); InterPro: IPR012029 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, members of PIRSF036667 from PIRSF possess a domain homologous to these proteins fused within a signal transduction sensor protein containing PAS/PAC and GAF domains. Therefore, it is possible that members of this family are involved in signal transduction (possibly as a sensor).
Probab=26.54 E-value=26 Score=21.28 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=13.5
Q ss_pred HHHHcCCCeeccccccc
Q 035557 28 EARSLGVPMVAMPQWTD 44 (129)
Q Consensus 28 eal~~gvP~i~~P~~~d 44 (129)
+.-+.|+|+++.|+..+
T Consensus 53 ~G~Y~G~PViV~PI~~~ 69 (84)
T PF09884_consen 53 EGPYKGVPVIVAPIKDE 69 (84)
T ss_pred CcccCCeeEEEEEEEcC
Confidence 45688999999998543
No 256
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=26.46 E-value=1.7e+02 Score=22.46 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=33.4
Q ss_pred cceecCCChhhHHHHHHcCCCeecccc---cccchhhHH--HHHHHhccccee
Q 035557 15 GCFLTHCGWNSTMEARSLGVPMVAMPQ---WTDQSTNSK--CVMDVWKTGLKV 62 (129)
Q Consensus 15 ~~~I~hgG~~s~~eal~~gvP~i~~P~---~~dq~~na~--~~~~~~g~g~~~ 62 (129)
..+|.|+-..-..|.-..-+|.+.+|. ..|-+.|+. ++.+. |.--.+
T Consensus 193 qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~Pv~~v~~~Ik~r-g~~~Ei 244 (393)
T KOG3877|consen 193 QGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTPVNKVLENIKRR-GNTDEI 244 (393)
T ss_pred cCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCCcHHHHHHHHhc-CCCcce
Confidence 347777777777788888999999997 458888764 45555 554444
No 257
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=26.45 E-value=58 Score=20.26 Aligned_cols=35 Identities=14% Similarity=0.132 Sum_probs=23.8
Q ss_pred HhhcccCCcceecCC---ChhhHHHH---HHcCCCeecccc
Q 035557 7 EVLAHEATGCFLTHC---GWNSTMEA---RSLGVPMVAMPQ 41 (129)
Q Consensus 7 ~iL~~~~~~~~I~hg---G~~s~~ea---l~~gvP~i~~P~ 41 (129)
..+..|++-.++..+ +.||..|. .+.|+|++++-.
T Consensus 57 ~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~ 97 (113)
T PF05014_consen 57 EGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTE 97 (113)
T ss_dssp HHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEc
Confidence 345677775444444 78999996 556999998854
No 258
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=26.35 E-value=47 Score=24.67 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=20.8
Q ss_pred eecCCCh-hhHHHHHHcCCCeecccc
Q 035557 17 FLTHCGW-NSTMEARSLGVPMVAMPQ 41 (129)
Q Consensus 17 ~I~hgG~-~s~~eal~~gvP~i~~P~ 41 (129)
+|+++|. +..+|+..+|+|.|.+-+
T Consensus 102 ~v~ySGTVgAA~Ea~~~GIPsIAvS~ 127 (266)
T PRK13934 102 VILSSGTLGAAFQAALLGIPAVAYSA 127 (266)
T ss_pred cccccHhHHHHHHHHhcCCCEEEEec
Confidence 3666664 778899999999999987
No 259
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=26.10 E-value=61 Score=23.82 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=21.3
Q ss_pred cceecCCC-hhhHHHHHHcCCCeecccc
Q 035557 15 GCFLTHCG-WNSTMEARSLGVPMVAMPQ 41 (129)
Q Consensus 15 ~~~I~hgG-~~s~~eal~~gvP~i~~P~ 41 (129)
+.-|.++| .+..+|+...|+|.|.+.+
T Consensus 97 g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 97 GDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred CCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 33455666 3778899999999999987
No 260
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=25.89 E-value=2.3e+02 Score=19.60 Aligned_cols=50 Identities=12% Similarity=0.168 Sum_probs=32.7
Q ss_pred HHHHhcccceecCCCCCCccHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHH
Q 035557 52 VMDVWKTGLKVPADDKGIVRREAIAHCIREILEGERCKEIRQNAGKWSNFAKE 104 (129)
Q Consensus 52 ~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~ 104 (129)
+.+. |.-..+..-+.+......+.++++..++.+ +.++.++.++.+..++
T Consensus 61 l~~~-g~~~~l~~I~~P~~~~~s~~e~f~~tlehE--q~vt~~I~~L~~~a~~ 110 (167)
T COG1528 61 LNER-GARPELKAIEAPPNKFSSLKELFEKTLEHE--QKVTSSINELAEVARE 110 (167)
T ss_pred HHhc-CCCceecCcCCCccccCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 4444 555555443444566677888888888766 4677777777777665
No 261
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=25.88 E-value=82 Score=21.77 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=17.6
Q ss_pred ceecCCChhhHHHHHH---------cCCCeecc
Q 035557 16 CFLTHCGWNSTMEARS---------LGVPMVAM 39 (129)
Q Consensus 16 ~~I~hgG~~s~~eal~---------~gvP~i~~ 39 (129)
.++--||.||+-|.+. +.+|++++
T Consensus 100 ~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~ 132 (178)
T TIGR00730 100 FIAMPGGFGTLEELFEVLTWAQLGIHQKPIILF 132 (178)
T ss_pred EEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEE
Confidence 4666788899888743 38888887
No 262
>COG4709 Predicted membrane protein [Function unknown]
Probab=25.87 E-value=2.5e+02 Score=19.94 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHhhcC
Q 035557 71 RREAIAHCIREILEGERCKEIRQNAGKWSNFAKEAVTKG 109 (129)
Q Consensus 71 ~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~ 109 (129)
|+.+..+.+++-++.-..+++++.+....+.++++...|
T Consensus 2 tk~efL~eL~~yL~~Lp~~~r~e~m~dyeehF~~a~~~G 40 (195)
T COG4709 2 TKTEFLNELEQYLEGLPREERREIMYDYEEHFREAQEAG 40 (195)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhcC
Confidence 556666677766653222477788888888888765444
No 263
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=25.81 E-value=60 Score=26.42 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=22.4
Q ss_pred CCcceecCCCh------hhHHHHHHcCCCeeccc
Q 035557 13 ATGCFLTHCGW------NSTMEARSLGVPMVAMP 40 (129)
Q Consensus 13 ~~~~~I~hgG~------~s~~eal~~gvP~i~~P 40 (129)
..+++++|.|- +.+.+|...++|+|++.
T Consensus 66 ~~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~ 99 (563)
T PRK08527 66 KVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLIS 99 (563)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 34558888884 57789999999999993
No 264
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=25.75 E-value=43 Score=23.93 Aligned_cols=23 Identities=9% Similarity=-0.128 Sum_probs=18.4
Q ss_pred cceecCCChhhHHHHHHcCCCee
Q 035557 15 GCFLTHCGWNSTMEARSLGVPMV 37 (129)
Q Consensus 15 ~~~I~hgG~~s~~eal~~gvP~i 37 (129)
-++|+|||...++=+...|.|.-
T Consensus 177 vlvVsHg~~ir~ll~~~lg~~~~ 199 (230)
T PRK14117 177 VFVGAHGNSIRALVKHIKGLSDD 199 (230)
T ss_pred EEEEeChHHHHHHHHHHhCcCHH
Confidence 35999999988887878887753
No 265
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=25.49 E-value=3.8e+02 Score=21.92 Aligned_cols=51 Identities=12% Similarity=0.103 Sum_probs=36.6
Q ss_pred CccHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhh
Q 035557 69 IVRREAIAHCIREILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSIS 125 (129)
Q Consensus 69 ~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 125 (129)
..+.+++.++|.+.|+-+. ++-+++.+++.+...+ ..+..=+..|++++..
T Consensus 429 P~d~~~va~ai~~AL~m~~-eEr~~r~~~~~~~v~~-----~d~~~W~~~fl~~la~ 479 (486)
T COG0380 429 PWDTKEVADAIKRALTMSL-EERKERHEKLLKQVLT-----HDVARWANSFLDDLAQ 479 (486)
T ss_pred CCChHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHh
Confidence 4578889999999886431 3566677777777666 5677777788887764
No 266
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=25.21 E-value=2.2e+02 Score=19.24 Aligned_cols=55 Identities=11% Similarity=0.065 Sum_probs=39.4
Q ss_pred hhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHH
Q 035557 46 STNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEGERCKEIRQNAGKWSNFAKE 104 (129)
Q Consensus 46 ~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~ 104 (129)
..|..+-.+. |.=-++--. ..+.++|...+++=+.|+.-++++..+.++.++..-
T Consensus 98 ~lN~~Y~~kF-GfpFii~v~---g~s~~~IL~~l~~Rl~n~~e~E~~~al~Ev~kIa~~ 152 (158)
T TIGR03180 98 EGNAAYEEKF-GRIFLIRAA---GRSAEEMLDALQARLPNDPEQELTIAAEQLRKINRL 152 (158)
T ss_pred HHHHHHHHHC-CCeEEEeeC---CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 3588888877 776666544 567888888888777665446788888888777654
No 267
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=25.12 E-value=50 Score=24.78 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=18.6
Q ss_pred ceecCCChhhHHHHHHcCCCee
Q 035557 16 CFLTHCGWNSTMEARSLGVPMV 37 (129)
Q Consensus 16 ~~I~hgG~~s~~eal~~gvP~i 37 (129)
++|+|||...++=+...|.|.-
T Consensus 236 LVVsHGgvIR~ll~~lLglp~~ 257 (299)
T PTZ00122 236 IIVCHGNVIRYLVCRALQLPPE 257 (299)
T ss_pred EEEeCChHHHHHHHHHhCcCHH
Confidence 5999999998888888887753
No 268
>PF09988 DUF2227: Uncharacterized metal-binding protein (DUF2227); InterPro: IPR019250 This entry represents hypothetical bacterial proteins that possess metal binding properties; however, their exact function has not yet been determined.
Probab=25.10 E-value=21 Score=24.61 Aligned_cols=29 Identities=24% Similarity=0.524 Sum_probs=21.5
Q ss_pred CCChHHhhcccCCcceecCCC-hhhHHHHHHcC
Q 035557 2 WCPQLEVLAHEATGCFLTHCG-WNSTMEARSLG 33 (129)
Q Consensus 2 w~pq~~iL~~~~~~~~I~hgG-~~s~~eal~~g 33 (129)
|.|.+.+++|.+ |+||+= .||+.--++..
T Consensus 66 W~PY~~~~~HRs---~lSH~piiGt~~RllYL~ 95 (169)
T PF09988_consen 66 WWPYQKLFRHRS---FLSHGPIIGTLLRLLYLA 95 (169)
T ss_pred hhhcccccCCCC---cccccchhhHHHHHHHHH
Confidence 889999999988 677865 46666665543
No 269
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=25.06 E-value=2.4e+02 Score=19.62 Aligned_cols=44 Identities=14% Similarity=0.256 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhh
Q 035557 73 EAIAHCIREILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSIS 125 (129)
Q Consensus 73 ~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 125 (129)
.++.+.+++|-+ ++++++.+++.+-.-. ...+..+.+||+-++.
T Consensus 50 ~eLkNeLREVRE-----ELkEKmeEIKQIKdiM----DKDFDKL~EFVEIMKe 93 (205)
T PF15079_consen 50 QELKNELREVRE-----ELKEKMEEIKQIKDIM----DKDFDKLHEFVEIMKE 93 (205)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHH
Confidence 457777777753 6777777666553322 4556677777766543
No 270
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=24.97 E-value=62 Score=26.35 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=22.3
Q ss_pred CCcceecCCCh------hhHHHHHHcCCCeeccc
Q 035557 13 ATGCFLTHCGW------NSTMEARSLGVPMVAMP 40 (129)
Q Consensus 13 ~~~~~I~hgG~------~s~~eal~~gvP~i~~P 40 (129)
+.+++++|.|- +.+.+|...++|+|++.
T Consensus 67 ~~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~ 100 (574)
T PRK06882 67 KVGCVLVTSGPGATNAITGIATAYTDSVPLVILS 100 (574)
T ss_pred CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 34558888884 46789999999999994
No 271
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=24.77 E-value=1.5e+02 Score=19.94 Aligned_cols=31 Identities=26% Similarity=0.240 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 035557 94 NAGKWSNFAKEAVTKGGSSDKNIDDFVANSI 124 (129)
Q Consensus 94 ~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 124 (129)
-+.++++.+++.+..|-+..+.++.|++...
T Consensus 58 ~A~dmR~~I~~~l~~G~s~~eI~~~~v~rYG 88 (148)
T PF03918_consen 58 IARDMRREIREMLAEGKSDEEIIDYFVERYG 88 (148)
T ss_dssp HHHHHHHHHHHHHHHT--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Confidence 3445555555555566777777777766543
No 272
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=24.77 E-value=1.6e+02 Score=22.88 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=21.3
Q ss_pred CccHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHH
Q 035557 69 IVRREAIAHCIREILEGERCKEIRQNAGKWSNFAK 103 (129)
Q Consensus 69 ~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~ 103 (129)
.++.++|...++..|.+- +|-.-++++.+-++
T Consensus 125 ~L~E~EIs~iL~~TLKGL---~YLH~~~KIHRDIK 156 (502)
T KOG0574|consen 125 PLSEQEISAVLRDTLKGL---QYLHDLKKIHRDIK 156 (502)
T ss_pred CccHHHHHHHHHHHHhHH---HHHHHHHHHHhhcc
Confidence 677788888777777655 66666666555444
No 273
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=24.46 E-value=2.4e+02 Score=19.35 Aligned_cols=62 Identities=11% Similarity=0.092 Sum_probs=40.1
Q ss_pred ecCCChhhHHHHHHcCCCeecccc-cccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHh
Q 035557 18 LTHCGWNSTMEARSLGVPMVAMPQ-WTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILE 84 (129)
Q Consensus 18 I~hgG~~s~~eal~~gvP~i~~P~-~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~ 84 (129)
|+-||-.|+.++++... .+++ .+|-++-...+.+. ..|+-++.+ ++..--+.|.+.+.....
T Consensus 3 VsG~GKStvg~~lA~~l---g~~fidGDdlHp~aNi~KM-~~GiPL~Dd-DR~pWL~~l~~~~~~~~~ 65 (161)
T COG3265 3 VSGSGKSTVGSALAERL---GAKFIDGDDLHPPANIEKM-SAGIPLNDD-DRWPWLEALGDAAASLAQ 65 (161)
T ss_pred CCccCHHHHHHHHHHHc---CCceecccccCCHHHHHHH-hCCCCCCcc-hhhHHHHHHHHHHHHhhc
Confidence 56688889999887643 3554 46877777788888 899888754 222223455555554443
No 274
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=24.24 E-value=66 Score=23.68 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=21.6
Q ss_pred CcceecCCCh-hhHHHHHHcCCCeecccc
Q 035557 14 TGCFLTHCGW-NSTMEARSLGVPMVAMPQ 41 (129)
Q Consensus 14 ~~~~I~hgG~-~s~~eal~~gvP~i~~P~ 41 (129)
++.-|.++|. +..+|+...|+|.|.+-+
T Consensus 101 ~g~dv~ySGTVgAA~ea~~~GiPsiA~S~ 129 (253)
T PRK13933 101 IGNDILYSGTVSAAIEGAIYKVPSIAVSA 129 (253)
T ss_pred CCcCCccchhHHHHHHHHHcCCCeEEEEe
Confidence 3445566663 778899999999999986
No 275
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=24.19 E-value=28 Score=27.05 Aligned_cols=32 Identities=25% Similarity=0.477 Sum_probs=16.6
Q ss_pred hhcccCCcceecCCChhhHHH----HHHcCCCeecc
Q 035557 8 VLAHEATGCFLTHCGWNSTME----ARSLGVPMVAM 39 (129)
Q Consensus 8 iL~~~~~~~~I~hgG~~s~~e----al~~gvP~i~~ 39 (129)
||.||+.+...|++|++|.+. +...|+..-++
T Consensus 170 ILThcnsg~Lat~~g~gtal~~i~~a~~~gk~f~V~ 205 (363)
T PRK05772 170 VLTQCNAGGLATGTGLGTALAPVKLAKALGMSVSVI 205 (363)
T ss_pred EEEecCCcchhhccccccHHHHHHHHHHCCCeEEEE
Confidence 445554444444455566554 33456665554
No 276
>PRK01112 phosphoglyceromutase; Provisional
Probab=24.06 E-value=47 Score=23.74 Aligned_cols=25 Identities=4% Similarity=-0.191 Sum_probs=19.5
Q ss_pred CCcceecCCChhhHHHHHHcCCCee
Q 035557 13 ATGCFLTHCGWNSTMEARSLGVPMV 37 (129)
Q Consensus 13 ~~~~~I~hgG~~s~~eal~~gvP~i 37 (129)
..-++|+|||...++=+...+.|.=
T Consensus 174 ~~ilVVsHg~vir~l~~~ll~~~~~ 198 (228)
T PRK01112 174 KNVFVSAHGNSLRSLIMDLEKLSEE 198 (228)
T ss_pred CeEEEEeCHHHHHHHHHHHhCCCHH
Confidence 3456889999988888888887764
No 277
>PRK13055 putative lipid kinase; Reviewed
Probab=24.05 E-value=84 Score=23.78 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=20.8
Q ss_pred ceecCCChhhHHHHHHc------CCCeecccc
Q 035557 16 CFLTHCGWNSTMEARSL------GVPMVAMPQ 41 (129)
Q Consensus 16 ~~I~hgG~~s~~eal~~------gvP~i~~P~ 41 (129)
.+|.-||-||+.|++.. .+|+-++|.
T Consensus 62 ~vvv~GGDGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 62 LIIAAGGDGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred EEEEECCCCHHHHHHHHHhhcCCCCcEEEECC
Confidence 39999999999988743 467778897
No 278
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=24.02 E-value=1.5e+02 Score=22.66 Aligned_cols=59 Identities=22% Similarity=0.369 Sum_probs=35.2
Q ss_pred CCChHHhhcccCCcceecCCChhhHHHHHHcCCCeecccccc--cchhhHHHHHHHhcccce-ecCCCCCCccHHHHHHH
Q 035557 2 WCPQLEVLAHEATGCFLTHCGWNSTMEARSLGVPMVAMPQWT--DQSTNSKCVMDVWKTGLK-VPADDKGIVRREAIAHC 78 (129)
Q Consensus 2 w~pq~~iL~~~~~~~~I~hgG~~s~~eal~~gvP~i~~P~~~--dq~~na~~~~~~~g~g~~-~~~~~~~~~~~~~l~~~ 78 (129)
++|..++|..+++ ++-|| |+.. .+..|+..++.. +=|.. +.....+.++.+.+.++
T Consensus 191 y~~l~ell~~sDi--i~l~~------------------Plt~~T~hLin~~~l~~m-k~ga~lVNtaRG~~VDe~ALi~A 249 (324)
T COG1052 191 YVDLDELLAESDI--ISLHC------------------PLTPETRHLINAEELAKM-KPGAILVNTARGGLVDEQALIDA 249 (324)
T ss_pred eccHHHHHHhCCE--EEEeC------------------CCChHHhhhcCHHHHHhC-CCCeEEEECCCccccCHHHHHHH
Confidence 4556677777777 66665 4433 334578887777 65433 33333336666777766
Q ss_pred HHH
Q 035557 79 IRE 81 (129)
Q Consensus 79 i~~ 81 (129)
++.
T Consensus 250 L~~ 252 (324)
T COG1052 250 LKS 252 (324)
T ss_pred HHh
Confidence 653
No 279
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=23.79 E-value=63 Score=26.37 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=22.2
Q ss_pred CcceecCCChhh------HHHHHHcCCCeeccc
Q 035557 14 TGCFLTHCGWNS------TMEARSLGVPMVAMP 40 (129)
Q Consensus 14 ~~~~I~hgG~~s------~~eal~~gvP~i~~P 40 (129)
.++++++.|-+. +.+|...++|+|++.
T Consensus 75 ~gv~~~t~GpG~~N~~~gl~~A~~~~~Pvl~I~ 107 (578)
T PRK06112 75 VAVVTAQNGPAATLLVAPLAEALKASVPIVALV 107 (578)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 344888888765 889999999999994
No 280
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase (3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often N-terminal to the glycoside hydrolase family 3, C-terminal domain IPR002772 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1Y65_A 2OXN_A 3GS6_A 1TR9_A 3GSM_A 3UT0_B 3RRX_A 3USZ_A 2X42_A 2X40_A ....
Probab=23.73 E-value=2.6e+02 Score=20.74 Aligned_cols=49 Identities=18% Similarity=0.331 Sum_probs=28.5
Q ss_pred hhHHHHHHcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHH
Q 035557 24 NSTMEARSLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREIL 83 (129)
Q Consensus 24 ~s~~eal~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l 83 (129)
.....++.+|+=|++++...+.. ...+.+. +... .++.+.|.+++++++
T Consensus 249 ~~~~~al~AG~D~~l~~~~~~~~--~~~l~~a------v~~g---~i~~~~ld~av~RIl 297 (299)
T PF00933_consen 249 EAAVRALNAGCDMLLVCNDPDDD--IDALVEA------VESG---RISEERLDEAVRRIL 297 (299)
T ss_dssp HHHHHHHHHT-SBEESSSSHHHH--HHHHHHH------HHTT---SSGHHHHHHHHHHHH
T ss_pred hHHHHHHhCccCeeCCCCchhHH--HHHHHHH------HHcC---CCCHHHHHHHHHHHh
Confidence 46667778888888776543322 1222222 3333 677778888888776
No 281
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=23.65 E-value=41 Score=23.67 Aligned_cols=30 Identities=30% Similarity=0.380 Sum_probs=21.8
Q ss_pred cceecCCCh-hhHHHHHHcCCCeeccccccc
Q 035557 15 GCFLTHCGW-NSTMEARSLGVPMVAMPQWTD 44 (129)
Q Consensus 15 ~~~I~hgG~-~s~~eal~~gvP~i~~P~~~d 44 (129)
+..|.++|. +..+|+...|+|.|.+-+..+
T Consensus 106 g~~v~~SGTVgAA~ea~~~GipaIA~S~~~~ 136 (196)
T PF01975_consen 106 GTDVLYSGTVGAAMEAALRGIPAIAVSLDSD 136 (196)
T ss_dssp GGGGGG-HHHHHHHHHHHTTSEEEEEEEESS
T ss_pred CcCcccccHHHHHHHHHHcCCCeEEEecccc
Confidence 334666664 668899999999999976444
No 282
>PRK03482 phosphoglycerate mutase; Provisional
Probab=23.35 E-value=55 Score=22.83 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=17.5
Q ss_pred ceecCCChhhHHHHHHcCCCe
Q 035557 16 CFLTHCGWNSTMEARSLGVPM 36 (129)
Q Consensus 16 ~~I~hgG~~s~~eal~~gvP~ 36 (129)
++|+|||...++=+...|.|.
T Consensus 146 liVsHg~~i~~l~~~l~~~~~ 166 (215)
T PRK03482 146 LLVSHGIALGCLVSTILGLPA 166 (215)
T ss_pred EEEeCcHHHHHHHHHHhCCCh
Confidence 599999998888888888775
No 283
>PLN02470 acetolactate synthase
Probab=23.14 E-value=75 Score=26.01 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=22.8
Q ss_pred CCcceecCCCh------hhHHHHHHcCCCeeccc
Q 035557 13 ATGCFLTHCGW------NSTMEARSLGVPMVAMP 40 (129)
Q Consensus 13 ~~~~~I~hgG~------~s~~eal~~gvP~i~~P 40 (129)
.++++++|.|- +.+.+|...++|+|++.
T Consensus 76 ~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 76 KVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred CCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 45568888884 47789999999999994
No 284
>PRK01295 phosphoglyceromutase; Provisional
Probab=23.02 E-value=53 Score=22.97 Aligned_cols=23 Identities=9% Similarity=-0.149 Sum_probs=18.9
Q ss_pred cceecCCChhhHHHHHHcCCCee
Q 035557 15 GCFLTHCGWNSTMEARSLGVPMV 37 (129)
Q Consensus 15 ~~~I~hgG~~s~~eal~~gvP~i 37 (129)
-++|+|||....+-+...+.|.-
T Consensus 153 vliVtHg~~ir~l~~~~l~~~~~ 175 (206)
T PRK01295 153 VLVAAHGNSLRALVMVLDGLTPE 175 (206)
T ss_pred EEEEcChHHHHHHHHHHhCCCHH
Confidence 45999999988888888888863
No 285
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=22.93 E-value=2.8e+02 Score=23.23 Aligned_cols=32 Identities=22% Similarity=0.385 Sum_probs=22.9
Q ss_pred HHHHhccc----ceecCCCCCCccHHHHHHHHHHHH
Q 035557 52 VMDVWKTG----LKVPADDKGIVRREAIAHCIREIL 83 (129)
Q Consensus 52 ~~~~~g~g----~~~~~~~~~~~~~~~l~~~i~~~l 83 (129)
....+|+| +.++.++++.++.+.|.++|++..
T Consensus 238 Aa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~ 273 (608)
T TIGR03811 238 AADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLA 273 (608)
T ss_pred HHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHH
Confidence 44444888 455655566899999999998753
No 286
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=22.81 E-value=72 Score=14.90 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=13.3
Q ss_pred cCCCCCCccHHHHHHHHHH
Q 035557 63 PADDKGIVRREAIAHCIRE 81 (129)
Q Consensus 63 ~~~~~~~~~~~~l~~~i~~ 81 (129)
+.+++|.++.+++...+++
T Consensus 10 D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 10 DKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp STTSSSEEEHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHh
Confidence 4455678888888877664
No 287
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=22.74 E-value=52 Score=23.57 Aligned_cols=22 Identities=5% Similarity=-0.229 Sum_probs=17.9
Q ss_pred cceecCCChhhHHHHHHcCCCe
Q 035557 15 GCFLTHCGWNSTMEARSLGVPM 36 (129)
Q Consensus 15 ~~~I~hgG~~s~~eal~~gvP~ 36 (129)
-++|+|||...++=+...|.|.
T Consensus 164 vliVsHG~vir~ll~~l~~~~~ 185 (236)
T PTZ00123 164 VLVAAHGNSLRALVKYLDKMSE 185 (236)
T ss_pred EEEEeCHHHHHHHHHHHhCCCH
Confidence 3599999998888887777774
No 288
>PLN03032 serine decarboxylase; Provisional
Probab=22.72 E-value=2.4e+02 Score=21.95 Aligned_cols=65 Identities=12% Similarity=0.213 Sum_probs=39.9
Q ss_pred cceecCCChhhHHHHHHcC-----CCeecccccccchhhHHHHHHHhcccce-ecCCCCCCccHHHHHHHHHH
Q 035557 15 GCFLTHCGWNSTMEARSLG-----VPMVAMPQWTDQSTNSKCVMDVWKTGLK-VPADDKGIVRREAIAHCIRE 81 (129)
Q Consensus 15 ~~~I~hgG~~s~~eal~~g-----vP~i~~P~~~dq~~na~~~~~~~g~g~~-~~~~~~~~~~~~~l~~~i~~ 81 (129)
.+++|.||.-+.+-++... .+.+.+|- .+++-..+.+... |++.. ++.++++.++.+.+.++|++
T Consensus 87 ~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~-~~H~Sv~kaa~~l-g~~~~~V~~d~~g~id~~~L~~~i~~ 157 (374)
T PLN03032 87 WGYITTCGTEGNLHGILVGREVFPDGILYASR-ESHYSVFKAARMY-RMEAVKVPTLPSGEIDYDDLERALAK 157 (374)
T ss_pred CEEEeCchHHHHHHHHHHHHHhCCCcEEEeCC-CceeHHHHHHHHc-CCCCeEeeeCCCCcCcHHHHHHHHHH
Confidence 4588999987777776542 23444442 3333343334434 66543 44455678999999999976
No 289
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=22.41 E-value=1.6e+02 Score=20.52 Aligned_cols=34 Identities=9% Similarity=-0.073 Sum_probs=22.9
Q ss_pred HHHcCCCeeccccc-ccc---hhhHHHHHHHhcccceec
Q 035557 29 ARSLGVPMVAMPQW-TDQ---STNSKCVMDVWKTGLKVP 63 (129)
Q Consensus 29 al~~gvP~i~~P~~-~dq---~~na~~~~~~~g~g~~~~ 63 (129)
++..++|++++|-. .+. ..|...+.+. |+-+.-.
T Consensus 111 ~L~~~~pvii~P~~M~~~p~~~~Nl~~L~~~-G~~vi~P 148 (185)
T PRK06029 111 MLKERRRLVLCVRETPLHLGHLRNMTKLAEM-GAIIMPP 148 (185)
T ss_pred HHhcCCCEEEEeccccCCHHHHHHHHHHHHC-cCEEECC
Confidence 56789999999952 232 3577778777 6654443
No 290
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=21.85 E-value=63 Score=21.73 Aligned_cols=28 Identities=14% Similarity=0.279 Sum_probs=20.7
Q ss_pred CcceecCCCh------hhHHHHHHcCCCeecccc
Q 035557 14 TGCFLTHCGW------NSTMEARSLGVPMVAMPQ 41 (129)
Q Consensus 14 ~~~~I~hgG~------~s~~eal~~gvP~i~~P~ 41 (129)
.+++++|.|- +.+.++...++|+|++.-
T Consensus 65 ~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 65 PGVVIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp EEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred ceEEEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 3448888873 577789999999999964
No 291
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=21.76 E-value=1.1e+02 Score=20.95 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=29.2
Q ss_pred HcCCCeecccccccchhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHH
Q 035557 31 SLGVPMVAMPQWTDQSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIRE 81 (129)
Q Consensus 31 ~~gvP~i~~P~~~dq~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ 81 (129)
..|+|.--+=++.|+..|-..+.++ |+--+...+ .++.+.+.+.+++
T Consensus 119 ~tgI~y~eMlFFDDe~~N~~~v~~l-GV~~v~v~~---Glt~~~~~~gL~~ 165 (169)
T PF12689_consen 119 KTGIPYEEMLFFDDESRNIEVVSKL-GVTCVLVPD---GLTWDEFERGLEK 165 (169)
T ss_dssp HH---GGGEEEEES-HHHHHHHHTT-T-EEEE-SS---S--HHHHHHHHHH
T ss_pred hcCCChhHEEEecCchhcceeeEec-CcEEEEeCC---CCCHHHHHHHHHH
Confidence 3567666665678999999988887 887777666 7888888777653
No 292
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=21.74 E-value=1.5e+02 Score=21.92 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=19.4
Q ss_pred ecCCC-hhhHHHHHHcCCCeeccccc
Q 035557 18 LTHCG-WNSTMEARSLGVPMVAMPQW 42 (129)
Q Consensus 18 I~hgG-~~s~~eal~~gvP~i~~P~~ 42 (129)
++++| -+..+|+...|+|.|.+-+.
T Consensus 101 v~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 101 VIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred eeeeehHHHHHHHHHcCccceeeeeh
Confidence 33444 36788999999999999874
No 293
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=21.37 E-value=84 Score=20.76 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=16.5
Q ss_pred CCChhhHHHHHHcCCCeecc
Q 035557 20 HCGWNSTMEARSLGVPMVAM 39 (129)
Q Consensus 20 hgG~~s~~eal~~gvP~i~~ 39 (129)
|+|......+...|-|++.+
T Consensus 54 g~gv~~l~~~arsgrrIlal 73 (135)
T COG4273 54 GAGVPALVDAARSGRRILAL 73 (135)
T ss_pred cCCcHHHHHHhhcCCceEEe
Confidence 66777888888889998877
No 294
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=21.29 E-value=95 Score=24.57 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=26.9
Q ss_pred hcccCCcceecCCChhhHHHHHH-------c--CCCeecccccc
Q 035557 9 LAHEATGCFLTHCGWNSTMEARS-------L--GVPMVAMPQWT 43 (129)
Q Consensus 9 L~~~~~~~~I~hgG~~s~~eal~-------~--gvP~i~~P~~~ 43 (129)
|..-++..+|.=||-+|..-+.. . ++|+|.+|-..
T Consensus 108 L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTI 151 (403)
T PRK06555 108 LAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTI 151 (403)
T ss_pred HHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeee
Confidence 66677888999999888755532 2 89999999743
No 295
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=21.15 E-value=2.3e+02 Score=18.91 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=26.8
Q ss_pred HcCCCeeccccccc--chhhHHHHHHHhcccceecCCCCCCccHHHHHHHHH
Q 035557 31 SLGVPMVAMPQWTD--QSTNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIR 80 (129)
Q Consensus 31 ~~gvP~i~~P~~~d--q~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~ 80 (129)
..|++++++.+..+ +..-.+.+++. +-|...... +.+...|..+++
T Consensus 130 ~~gi~v~~I~~~~~~~~~~~l~~iA~~-tgG~~~~~~---d~~~~~~~~~~~ 177 (178)
T cd01451 130 ARGISALVIDTEGRPVRRGLAKDLARA-LGGQYVRLP---DLSADAIASAVR 177 (178)
T ss_pred hcCCcEEEEeCCCCccCccHHHHHHHH-cCCeEEEcC---cCCHHHHHHHhh
Confidence 45677776665433 23345566666 666666555 566666666554
No 296
>PRK08322 acetolactate synthase; Reviewed
Probab=21.12 E-value=85 Score=25.34 Aligned_cols=28 Identities=32% Similarity=0.414 Sum_probs=22.3
Q ss_pred CCcceecCCCh------hhHHHHHHcCCCeeccc
Q 035557 13 ATGCFLTHCGW------NSTMEARSLGVPMVAMP 40 (129)
Q Consensus 13 ~~~~~I~hgG~------~s~~eal~~gvP~i~~P 40 (129)
..+++++|.|- +.+.+|...++|+|++.
T Consensus 63 ~~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 63 KAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 34558888874 47889999999999994
No 297
>PRK05920 aromatic acid decarboxylase; Validated
Probab=21.09 E-value=1.4e+02 Score=21.23 Aligned_cols=32 Identities=6% Similarity=-0.059 Sum_probs=22.7
Q ss_pred HHHHcCCCeeccccc-ccc---hhhHHHHHHHhcccc
Q 035557 28 EARSLGVPMVAMPQW-TDQ---STNSKCVMDVWKTGL 60 (129)
Q Consensus 28 eal~~gvP~i~~P~~-~dq---~~na~~~~~~~g~g~ 60 (129)
.++..+.|++++|-. ... ..|...+.+. |+-+
T Consensus 125 ~~L~~~~pvvi~P~~m~~~~~~~~nl~~L~~~-G~~i 160 (204)
T PRK05920 125 VVLKERRKLILVPRETPLSLIHLENMLKLAEA-GAII 160 (204)
T ss_pred HHHhcCCCEEEEeCCCCCCHHHHHHHHHHHHC-CCEE
Confidence 567899999999973 333 3677777766 6654
No 298
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=20.82 E-value=61 Score=23.46 Aligned_cols=23 Identities=9% Similarity=-0.019 Sum_probs=18.3
Q ss_pred cceecCCChhhHHHHHHcCCCee
Q 035557 15 GCFLTHCGWNSTMEARSLGVPMV 37 (129)
Q Consensus 15 ~~~I~hgG~~s~~eal~~gvP~i 37 (129)
-++|||||...++=+...|+|.-
T Consensus 176 vlvVsHg~vir~l~~~l~~l~~~ 198 (245)
T TIGR01258 176 VLIVAHGNSLRALVKHLEGISDE 198 (245)
T ss_pred EEEEcChHHHHHHHHHHHCcCHH
Confidence 45999999988888877777653
No 299
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=20.80 E-value=2.2e+02 Score=21.11 Aligned_cols=51 Identities=14% Similarity=0.281 Sum_probs=34.7
Q ss_pred ccCCcceecCCChhhHHHHHHc----CCCeecccccccchhhHHHHHHHhc-ccceecCCCCCCccHHHHHHHHHHHHh
Q 035557 11 HEATGCFLTHCGWNSTMEARSL----GVPMVAMPQWTDQSTNSKCVMDVWK-TGLKVPADDKGIVRREAIAHCIREILE 84 (129)
Q Consensus 11 ~~~~~~~I~hgG~~s~~eal~~----gvP~i~~P~~~dq~~na~~~~~~~g-~g~~~~~~~~~~~~~~~l~~~i~~~l~ 84 (129)
.+++ ++.=||-||++.+... ++|++.+=. | +|-.. ++..+++.+.+.++++
T Consensus 55 ~~d~--ivvlGGDGtlL~~~~~~~~~~~pilgin~---------------G~lGFLt------~~~~~~~~~~~~~~~~ 110 (281)
T COG0061 55 KADL--IVVLGGDGTLLRAARLLARLDIPVLGINL---------------GHLGFLT------DFEPDELEKALDALLE 110 (281)
T ss_pred CceE--EEEeCCcHHHHHHHHHhccCCCCEEEEeC---------------CCccccc------ccCHHHHHHHHHHHhc
Confidence 4556 8999999999988654 457777611 2 34333 4557788888888776
No 300
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=20.68 E-value=1.9e+02 Score=16.82 Aligned_cols=50 Identities=16% Similarity=0.221 Sum_probs=25.6
Q ss_pred CccHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhC
Q 035557 69 IVRREAIAHCIREILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSISS 126 (129)
Q Consensus 69 ~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 126 (129)
...++.+.+.++.++.+ .+.+--..+.+.+. .|-+....+..+.+.+...
T Consensus 2 ~p~~~~i~~i~~~~~~~----~~~~~~~~~~~l~~----~G~s~~~Il~~l~~~l~~~ 51 (89)
T PF08542_consen 2 WPPPEVIEEILESCLNG----DFKEARKKLYELLV----EGYSASDILKQLHEVLVES 51 (89)
T ss_dssp S--HHHHHHHHHHHHHT----CHHHHHHHHHHHHH----TT--HHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHh
Confidence 34566677666666654 34443333333333 3567777777777766553
No 301
>PF11248 DUF3046: Protein of unknown function (DUF3046); InterPro: IPR021408 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=20.65 E-value=65 Score=18.49 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=17.0
Q ss_pred eecCCChhhHHHHHHcCCCe
Q 035557 17 FLTHCGWNSTMEARSLGVPM 36 (129)
Q Consensus 17 ~I~hgG~~s~~eal~~gvP~ 36 (129)
+++--|..|..|||..|++.
T Consensus 27 vL~~LGgrT~~eAL~~G~dp 46 (63)
T PF11248_consen 27 VLSELGGRTAAEALEAGVDP 46 (63)
T ss_pred chhhcCCcCHHHHHHcCCCH
Confidence 66777888999999999875
No 302
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.33 E-value=2.6e+02 Score=22.64 Aligned_cols=38 Identities=29% Similarity=0.340 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHhhcCCC
Q 035557 74 AIAHCIREILEGERCKEIRQNAGKWSNFAKEAVTKGGS 111 (129)
Q Consensus 74 ~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~ 111 (129)
.|-+.|.+--+.+..++++++++++.+.-.++...||+
T Consensus 142 Ki~e~v~~nke~ea~q~mkrKaKElqr~r~ea~rrgg~ 179 (512)
T KOG2635|consen 142 KIHELVMRNKEREAKQEMKRKAKELQRARKEAERRGGS 179 (512)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 34444433333333467999999997777766666643
No 303
>PRK13797 putative bifunctional allantoicase/OHCU decarboxylase; Provisional
Probab=20.31 E-value=4.6e+02 Score=21.60 Aligned_cols=55 Identities=18% Similarity=0.100 Sum_probs=39.4
Q ss_pred hhhHHHHHHHhcccceecCCCCCCccHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHH
Q 035557 46 STNSKCVMDVWKTGLKVPADDKGIVRREAIAHCIREILEGERCKEIRQNAGKWSNFAKE 104 (129)
Q Consensus 46 ~~na~~~~~~~g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~ 104 (129)
..|.++-++. |.=-++--. ..+.++|.+.+++=|.|..-++++..+.++.++.+-
T Consensus 453 ~lN~aY~eKF-GFpFIIca~---G~s~~eILa~l~~RL~N~~e~E~~~Al~Ev~kIa~l 507 (516)
T PRK13797 453 RGNAAYEERF-GFIFLVRAA---GRGAEEMLELLRARLAHDPEQELRIAAGQQAEITAL 507 (516)
T ss_pred HHHHHHHHhC-CCeEEEEEC---CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 3588888877 776666544 467888998888777665445778777787777654
No 304
>PRK08266 hypothetical protein; Provisional
Probab=20.29 E-value=93 Score=25.12 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=21.9
Q ss_pred CcceecCCCh------hhHHHHHHcCCCeeccc
Q 035557 14 TGCFLTHCGW------NSTMEARSLGVPMVAMP 40 (129)
Q Consensus 14 ~~~~I~hgG~------~s~~eal~~gvP~i~~P 40 (129)
.+++++|.|- +.+.+|...++|+|++.
T Consensus 69 ~~v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 101 (542)
T PRK08266 69 PGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLT 101 (542)
T ss_pred CeEEEECCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 4458888884 47889999999999983
No 305
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=20.15 E-value=3e+02 Score=23.30 Aligned_cols=65 Identities=15% Similarity=0.085 Sum_probs=42.8
Q ss_pred ecCCChhhHHHHHHcCCCeecccc-------cccchhhH---------------HHHHHHhcccceecCCCCCCccHHHH
Q 035557 18 LTHCGWNSTMEARSLGVPMVAMPQ-------WTDQSTNS---------------KCVMDVWKTGLKVPADDKGIVRREAI 75 (129)
Q Consensus 18 I~hgG~~s~~eal~~gvP~i~~P~-------~~dq~~na---------------~~~~~~~g~g~~~~~~~~~~~~~~~l 75 (129)
..|.|...+..|++++.+++.+=+ .+.|+.=. ..+++..|+..+-.-+ ..+.+++
T Consensus 457 F~HsGi~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~~~~g~~~~~i~iee~~r~~Gv~~v~~vd---p~~~~~~ 533 (640)
T COG4231 457 FFHSGILALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGVAAEGTKSTAIVIEEVVRAMGVEDVETVD---PYDVKEL 533 (640)
T ss_pred ccccCcHHHHHHHhcCCCeEEEEEeccchhccCCCCCCCcccccCCCccceeEhhHhhhhcCceeeeccC---CcchHHH
Confidence 468899999999999999998866 34565431 1222222444333322 5677888
Q ss_pred HHHHHHHHhC
Q 035557 76 AHCIREILEG 85 (129)
Q Consensus 76 ~~~i~~~l~~ 85 (129)
.+++++.++-
T Consensus 534 ~~~~keale~ 543 (640)
T COG4231 534 SEAIKEALEV 543 (640)
T ss_pred HHHHHHHhcC
Confidence 8888888753
No 306
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=20.12 E-value=6e+02 Score=22.33 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=36.6
Q ss_pred cccceecCCCCCCccHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 035557 57 KTGLKVPADDKGIVRREAIAHCIREILEGERCKEIRQNAGKWSNFAKEAVTKGGSSDKNIDDFVANSI 124 (129)
Q Consensus 57 g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 124 (129)
+-++.++ ..+.+.++++|.+.+.-+.. +-+.+.+++.+.... .....=++.|+.+|.
T Consensus 494 ~~Ai~VN-----P~d~~~~a~ai~~AL~m~~~-Er~~R~~~~~~~v~~-----~d~~~W~~~fl~~l~ 550 (854)
T PLN02205 494 SGAIRVN-----PWNIDAVADAMDSALEMAEP-EKQLRHEKHYRYVST-----HDVGYWARSFLQDLE 550 (854)
T ss_pred CcCeEEC-----CCCHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHhh-----CCHHHHHHHHHHHHH
Confidence 4456665 45889999999999875422 455666666666655 344444555655554
Done!