BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035558
(253 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 18/212 (8%)
Query: 50 WNEAEPRRIGTSSIDTTCTIWDI-----EREAVDTQLI--AHDKEVYDIAWGGV--GVFA 100
WN + ++S D T +WDI E +D + I H V D+AW + +F
Sbjct: 189 WNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFG 248
Query: 101 SVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160
SV+ D + ++D R+ S + + L +N +AT D V + D+
Sbjct: 249 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT-VALWDL 307
Query: 161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG--QPVEGGLD-- 216
R L + + H+ + + W+PH+ + ++G D + +WDLS +G Q E D
Sbjct: 308 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 367
Query: 217 PILAYTAG---AEIEQLQWSSSQPDWVAIAFS 245
P L + G A+I W+ ++P W+ + S
Sbjct: 368 PELLFIHGGHTAKISDFSWNPNEP-WIICSVS 398
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 32/222 (14%)
Query: 7 LLATSSDF-LRVWRIS---DEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS 62
LL+ S D + +W I+ E R ++ K++ G + + W+ G+ +
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTG-----HTAVVEDVAWHLLHESLFGSVA 251
Query: 63 IDTTCTIWDIEREAVDT---QLIAHDKEVYDIAWGGVGVF--ASVSADGSVRVFDLRDKE 117
D IWD + AH EV +++ F A+ SAD +V ++DLR+ +
Sbjct: 252 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 311
Query: 118 HSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF--------------P 163
+ES + + + ++ W+ + +A+ D ++ V D+ P
Sbjct: 312 LKLHSFESHKDE--IFQVQWSPHNETILASSGTDR-RLHVWDLSKIGEEQSTEDAEDGPP 368
Query: 164 TLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLS 205
L + H A ++ +W P+ IC+ +D+ +W ++
Sbjct: 369 ELLFIH-GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 166 PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSS 206
P + L+ HQ ++W P+ + ++ +A DD +WD+++
Sbjct: 173 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINA 213
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 18/212 (8%)
Query: 50 WNEAEPRRIGTSSIDTTCTIWDI-----EREAVDTQLI--AHDKEVYDIAWGGV--GVFA 100
WN + ++S D T +WDI E +D + I H V D+AW + +F
Sbjct: 191 WNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFG 250
Query: 101 SVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160
SV+ D + ++D R+ S + + L +N +AT D V + D+
Sbjct: 251 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT-VALWDL 309
Query: 161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG--QPVEGGLD-- 216
R L + + H+ + + W+PH+ + ++G D + +WDLS +G Q E D
Sbjct: 310 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 369
Query: 217 PILAYTAG---AEIEQLQWSSSQPDWVAIAFS 245
P L + G A+I W+ ++P W+ + S
Sbjct: 370 PELLFIHGGHTAKISDFSWNPNEP-WIICSVS 400
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 32/222 (14%)
Query: 7 LLATSSDF-LRVWRIS---DEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS 62
LL+ S D + +W I+ E R ++ K++ G + + W+ G+ +
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTG-----HTAVVEDVAWHLLHESLFGSVA 253
Query: 63 IDTTCTIWDIEREAVDT---QLIAHDKEVYDIAWGGVGVF--ASVSADGSVRVFDLRDKE 117
D IWD + AH EV +++ F A+ SAD +V ++DLR+ +
Sbjct: 254 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 313
Query: 118 HSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF--------------P 163
+ES + + + ++ W+ + +A+ D ++ V D+ P
Sbjct: 314 LKLHSFESHKDE--IFQVQWSPHNETILASSGTDR-RLHVWDLSKIGEEQSTEDAEDGPP 370
Query: 164 TLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLS 205
L + H A ++ +W P+ IC+ +D+ +W ++
Sbjct: 371 ELLFIH-GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 411
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 166 PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSS 206
P + L+ HQ ++W P+ + ++ +A DD +WD+++
Sbjct: 175 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINA 215
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 18/212 (8%)
Query: 50 WNEAEPRRIGTSSIDTTCTIWDI-----EREAVDTQLI--AHDKEVYDIAWGGV--GVFA 100
WN + ++S D T +WDI E +D + I H V D+AW + +F
Sbjct: 193 WNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFG 252
Query: 101 SVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160
SV+ D + ++D R+ S + + L +N +AT D V + D+
Sbjct: 253 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT-VALWDL 311
Query: 161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG--QPVEGGLD-- 216
R L + + H+ + + W+PH+ + ++G D + +WDLS +G Q E D
Sbjct: 312 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 371
Query: 217 PILAYTAG---AEIEQLQWSSSQPDWVAIAFS 245
P L + G A+I W+ ++P W+ + S
Sbjct: 372 PELLFIHGGHTAKISDFSWNPNEP-WIICSVS 402
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 32/222 (14%)
Query: 7 LLATSSDF-LRVWRIS---DEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS 62
LL+ S D + +W I+ E R ++ K++ G + + W+ G+ +
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTG-----HTAVVEDVAWHLLHESLFGSVA 255
Query: 63 IDTTCTIWDIEREAVDT---QLIAHDKEVYDIAWGGVGVF--ASVSADGSVRVFDLRDKE 117
D IWD + AH EV +++ F A+ SAD +V ++DLR+ +
Sbjct: 256 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 315
Query: 118 HSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF--------------P 163
+ES + + + ++ W+ + +A+ D ++ V D+ P
Sbjct: 316 LKLHSFESHKDE--IFQVQWSPHNETILASSGTDR-RLHVWDLSKIGEEQSTEDAEDGPP 372
Query: 164 TLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLS 205
L + H A ++ +W P+ IC+ +D+ +W ++
Sbjct: 373 ELLFIH-GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 413
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 166 PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSS 206
P + L+ HQ ++W P+ + ++ +A DD +WD+++
Sbjct: 177 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINA 217
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 100/229 (43%), Gaps = 23/229 (10%)
Query: 33 LNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDI-----EREAVDTQLI--AHD 85
L G++ Y WN + ++S D T +WDI E + VD + I H
Sbjct: 175 LRGHQKEGY-----GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHS 229
Query: 86 KEVYDIAWGGV--GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPR 143
V D+AW + +F SV+ D + ++D R S + + L +N
Sbjct: 230 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF 289
Query: 144 YMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWD 203
+AT D V + D+R L + + H+ + + W+PH+ + ++G D + +WD
Sbjct: 290 ILATGSADKT-VALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Query: 204 LSSMG--QPVEGGLD--PILAYTAG---AEIEQLQWSSSQPDWVAIAFS 245
LS +G Q E D P L + G A+I W+ ++P WV + S
Sbjct: 349 LSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-WVICSVS 396
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 95/222 (42%), Gaps = 32/222 (14%)
Query: 7 LLATSSDF-LRVWRIS---DEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS 62
LL+ S D + +W I+ E + V+ K++ G + + W+ G+ +
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTG-----HSAVVEDVAWHLLHESLFGSVA 249
Query: 63 IDTTCTIWDIEREAVD--TQLI-AHDKEVYDIAWGGVGVF--ASVSADGSVRVFDLRDKE 117
D IWD + L+ AH EV +++ F A+ SAD +V ++DLR+ +
Sbjct: 250 DDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 309
Query: 118 HSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF--------------P 163
+ES + + + ++ W+ + +A+ D ++ V D+ P
Sbjct: 310 LKLHTFESHKDE--IFQVHWSPHNETILASSGTDR-RLNVWDLSKIGEEQSAEDAEDGPP 366
Query: 164 TLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLS 205
L + H A ++ +W P+ IC+ +D+ IW ++
Sbjct: 367 ELLFIH-GGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMA 407
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 134 RLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPV--------VELQRHQASVNAIAWAPH 185
R + Q+P +AT S +V + P P + L+ HQ ++W +
Sbjct: 131 RARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSN 190
Query: 186 SSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAG--AEIEQLQW 232
S H+ +A DD +WD+++ P EG + A G A +E + W
Sbjct: 191 LSGHLLSASDDHTVCLWDINA--GPKEGKIVDAKAIFTGHSAVVEDVAW 237
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 100/229 (43%), Gaps = 23/229 (10%)
Query: 33 LNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDI-----EREAVDTQLI--AHD 85
L G++ Y WN + ++S D T +WDI E + VD + I H
Sbjct: 175 LRGHQKEGY-----GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHS 229
Query: 86 KEVYDIAWGGV--GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPR 143
V D+AW + +F SV+ D + ++D R S + + L +N
Sbjct: 230 AVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF 289
Query: 144 YMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWD 203
+AT D V + D+R L + + H+ + + W+PH+ + ++G D + +WD
Sbjct: 290 ILATGSADKT-VALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Query: 204 LSSMG--QPVEGGLD--PILAYTAG---AEIEQLQWSSSQPDWVAIAFS 245
LS +G Q E D P L + G A+I W+ ++P WV + S
Sbjct: 349 LSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-WVICSVS 396
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 9/138 (6%)
Query: 78 DTQLIAHDKEVYDIAWGG--VGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTP---- 131
D +L H KE Y ++W G S S D +V ++D+ I ++ T
Sbjct: 172 DLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAV 231
Query: 132 LVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL--PVVELQRHQASVNAIAWAPHSSCH 189
+ + W+ + + D K+ + D R T P + H A VN +++ P+S
Sbjct: 232 VEDVAWHLLHESLFGS-VADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFI 290
Query: 190 ICTAGDDSQALIWDLSSM 207
+ T D +WDL ++
Sbjct: 291 LATGSADKTVALWDLRNL 308
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 134 RLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPV--------VELQRHQASVNAIAWAPH 185
R + Q+P +AT S +V + P P + L+ HQ ++W +
Sbjct: 131 RARYXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSN 190
Query: 186 SSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAG--AEIEQLQW 232
S H+ +A DD +WD+++ P EG + A G A +E + W
Sbjct: 191 LSGHLLSASDDHTVCLWDINA--GPKEGKIVDAKAIFTGHSAVVEDVAW 237
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 93/219 (42%), Gaps = 32/219 (14%)
Query: 7 LLATSSDF-LRVWRIS---DEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS 62
LL+ S D + +W I+ E + V+ K++ G + + W+ G+ +
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTG-----HSAVVEDVAWHLLHESLFGSVA 249
Query: 63 IDTTCTIWDIEREAVD--TQLI-AHDKEVYDIAWGGVGVF--ASVSADGSVRVFDLRDKE 117
D IWD + L+ AH EV +++ F A+ SAD +V ++DLR+ +
Sbjct: 250 DDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 309
Query: 118 HSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF--------------P 163
+ES + + + ++ W+ + +A+ D ++ V D+ P
Sbjct: 310 LKLHTFESHKDE--IFQVHWSPHNETILASSGTDR-RLNVWDLSKIGEEQSAEDAEDGPP 366
Query: 164 TLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIW 202
L + H A ++ +W P+ IC+ +D+ IW
Sbjct: 367 ELLFIH-GGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 99/229 (43%), Gaps = 23/229 (10%)
Query: 33 LNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDI-----EREAVDTQLI--AHD 85
L G++ Y WN + ++S D T +WDI E + VD + I H
Sbjct: 173 LRGHQKEGY-----GLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHT 227
Query: 86 KEVYDIAWGGV--GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPR 143
V D++W + +F SV+ D + ++D R S + + L +N
Sbjct: 228 AVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEF 287
Query: 144 YMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWD 203
+AT D V + D+R L + + H+ + + W+PH+ + ++G D + +WD
Sbjct: 288 ILATGSADKT-VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346
Query: 204 LSSMGQP-----VEGGLDPILAYTAG--AEIEQLQWSSSQPDWVAIAFS 245
LS +G+ E G +L G A+I W+ ++P WV + S
Sbjct: 347 LSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-WVICSVS 394
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 26/158 (16%)
Query: 85 DKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRY 144
D YD G G F SVS + + I +E + R + Q+P
Sbjct: 94 DASHYDSEKGEFGGFGSVSGKIEIEI---------KINHEGE-----VNRARYMPQNPCI 139
Query: 145 MATIIMDSAKVVVLDIRFPTLPV--------VELQRHQASVNAIAWAPHSSCHICTAGDD 196
+AT S +V + P+ P + L+ HQ ++W P+ S H+ +A DD
Sbjct: 140 IATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDD 199
Query: 197 SQALIWDLSSMGQPVEGG-LDPILAYTAG-AEIEQLQW 232
+WD+S++ P EG +D +T A +E + W
Sbjct: 200 HTICLWDISAV--PKEGKVVDAKTIFTGHTAVVEDVSW 235
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 99/237 (41%), Gaps = 35/237 (14%)
Query: 7 LLATSSDF-LRVWRIS---DEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS 62
LL+ S D + +W IS E + V+ K++ G + + W+ G+ +
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFTG-----HTAVVEDVSWHLLHESLFGSVA 247
Query: 63 IDTTCTIWDIEREAVDT---QLIAHDKEVYDIAWGGVGVF--ASVSADGSVRVFDLRDKE 117
D IWD + AH EV +++ F A+ SAD +V ++DLR+ +
Sbjct: 248 DDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 307
Query: 118 HSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF--------------P 163
+ES + + + ++ W+ + +A+ D ++ V D+ P
Sbjct: 308 LKLHSFESHKDE--IFQVQWSPHNETILASSGTDR-RLNVWDLSKIGEEQSPEDAEDGPP 364
Query: 164 TLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSS---MGQPVEGGLDP 217
L + H A ++ +W P+ IC+ +D+ +W ++ + EG +DP
Sbjct: 365 ELLFIH-GGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVDP 420
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 71/123 (57%), Gaps = 19/123 (15%)
Query: 7 LLATSS--DFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEP-RRIGTSSI 63
LLA+SS D +R+W+ D+D E ++LNG++ G + S D+++ E R+ + S
Sbjct: 167 LLASSSYDDTVRIWKDYDDDW--ECVAVLNGHE-----GTVWSSDFDKTEGVFRLCSGSD 219
Query: 64 DTTCTIW-------DIEREAVDTQLI--AHDKEVYDIAWGGVGVFASVSADGSVRVFDLR 114
D+T +W D ++E V ++ H ++VY++AWG G+ ASV ADG + V++
Sbjct: 220 DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEV 279
Query: 115 DKE 117
D E
Sbjct: 280 DGE 282
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 162 FPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIW 202
F + V++ H+ ++ ++AW PH+S + DS IW
Sbjct: 46 FTLIDVLDETAHKKAIRSVAWRPHTSL-LAAGSFDSTVSIW 85
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 94/204 (46%), Gaps = 23/204 (11%)
Query: 60 TSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVG-VFASVSADGSVRVFDLRDKEH 118
+SS D T +WD+ + + H EVY +A+ S A+ ++++++ +
Sbjct: 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK 152
Query: 119 STIIYESSEPD-------TPLVRLGWNKQDPR--YMATIIMDSAKVVVLDIRFPTLPVVE 169
+ + + D +P+++ NK P Y A++ D ++ V + F
Sbjct: 153 FSSAEKENHSDWVSCVRYSPIMKSA-NKVQPFAPYFASVGWD-GRLKVWNTNFQIR--YT 208
Query: 170 LQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQ 229
+ H+++VN ++ +P+ +I T G D + LIWD+ ++ P + AG+ I Q
Sbjct: 209 FKAHESNVNHLSISPNGK-YIATGGKDKKLLIWDILNLTYPQR-------EFDAGSTINQ 260
Query: 230 LQWSSSQPDWVAIAFSTKLQILRV 253
+ + + + WVA+ ++I +
Sbjct: 261 IAF-NPKLQWVAVGTDQGVKIFNL 283
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 91/212 (42%), Gaps = 29/212 (13%)
Query: 6 DLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDW-NEAEPRRIGTSSI 63
++LA + D + +W S D + LL + EY ++S W E +GTSS
Sbjct: 37 NVLAVALDNSVYLWSASSGD----ILQLLQMEQPGEY---ISSVAWIKEGNYLAVGTSSA 89
Query: 64 DTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIY 123
+ +WD++++ + +H V ++W + +S S G + D+R EH
Sbjct: 90 EVQ--LWDVQQQKRLRNMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEHHVATL 146
Query: 124 ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT-------LPVVELQRHQAS 176
+ +R D R++A+ D+ V +P+ +P+ +HQ +
Sbjct: 147 SGHSQEVCGLRWA---PDGRHLASGGNDNLVNV-----WPSAPGEGGWVPLQTFTQHQGA 198
Query: 177 VNAIAWAPHSSCHICTAG--DDSQALIWDLSS 206
V A+AW P S + T G D IW++ S
Sbjct: 199 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 230
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 33/214 (15%)
Query: 6 DLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDW-NEAEPRRIGTSSI 63
++LA + D + +W S D + LL + EY ++S W E +GTSS
Sbjct: 128 NVLAVALDNSVYLWSASSGD----ILQLLQMEQPGEY---ISSVAWIKEGNYLAVGTSSA 180
Query: 64 DTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEH--STI 121
+ +WD++++ + +H V ++W + +S S G + D+R EH +T+
Sbjct: 181 EVQ--LWDVQQQKRLRNMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEHHVATL 237
Query: 122 IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT-------LPVVELQRHQ 174
S E + L W D R++A+ D+ V +P+ +P+ +HQ
Sbjct: 238 SGHSQE----VCGLRW-APDGRHLASGGNDNLVNV-----WPSAPGEGGWVPLQTFTQHQ 287
Query: 175 ASVNAIAWAPHSSCHICTAG--DDSQALIWDLSS 206
+V A+AW P S + T G D IW++ S
Sbjct: 288 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 321
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 33/214 (15%)
Query: 6 DLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDW-NEAEPRRIGTSSI 63
++LA + D + +W S D + LL + EY ++S W E +GTSS
Sbjct: 117 NVLAVALDNSVYLWSASSGD----ILQLLQMEQPGEY---ISSVAWIKEGNYLAVGTSSA 169
Query: 64 DTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEH--STI 121
+ +WD++++ + +H V ++W + +S S G + D+R EH +T+
Sbjct: 170 EVQ--LWDVQQQKRLRNMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEHHVATL 226
Query: 122 IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT-------LPVVELQRHQ 174
S E + L W D R++A+ D+ V +P+ +P+ +HQ
Sbjct: 227 SGHSQE----VCGLRW-APDGRHLASGGNDNLVNV-----WPSAPGEGGWVPLQTFTQHQ 276
Query: 175 ASVNAIAWAPHSSCHICTAG--DDSQALIWDLSS 206
+V A+AW P S + T G D IW++ S
Sbjct: 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 310
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 20/169 (11%)
Query: 69 IWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEH--STIIYESS 126
I+D+E + + H V ++W V +S S G++ D+R H T+ SS
Sbjct: 160 IYDVESQTKLRTMAGHQARVGCLSWN-RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS 218
Query: 127 EPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHS 186
E + L W + D +A+ D+ V + D R ++P H A+V A+AW P
Sbjct: 219 E----VCGLAW-RSDGLQLASGGNDNV-VQIWDAR-SSIPKFTKTNHNAAVKAVAWCPWQ 271
Query: 187 SCHICTAGD--DSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWS 233
S + T G D Q W+ ++ + + AG+++ L WS
Sbjct: 272 SNLLATGGGTMDKQIHFWNAATGAR--------VNTVDAGSQVTSLIWS 312
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 23/174 (13%)
Query: 56 RRIGTSSIDTTCTIWDIEREA---VDTQLIAHDKEVYDIAWGGVG---VFASVSADGSVR 109
+R+ T S D T I+++E E +DT L H+ V+ + W + AS S DG V
Sbjct: 22 KRMATCSSDKTIKIFEVEGETHKLIDT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80
Query: 110 VFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR--FPTLPV 167
++ + S I + + + W + M + KV V++ + T P+
Sbjct: 81 IWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI 139
Query: 168 VELQRHQASVNAIAWAPHS------------SCHICTAGDDSQALIWDLSSMGQ 209
+ + H VN+ +WAP + S T G D+ IW +S Q
Sbjct: 140 I-IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 192
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 59/110 (53%), Gaps = 13/110 (11%)
Query: 83 AHDKEVYDIAWGGVGV-FASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD 141
AH++ ++D G A+ S+D ++++F++ + H +I + + P+ R+ W
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK-LIDTLTGHEGPVWRVDW--AH 63
Query: 142 PRY---MATIIMDSAKVVVL---DIRFPTLPVVELQRHQASVNAIAWAPH 185
P++ +A+ D KV++ + R+ + V + H ASVN++ WAPH
Sbjct: 64 PKFGTILASCSYD-GKVMIWKEENGRWSQIAVHAV--HSASVNSVQWAPH 110
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 23/174 (13%)
Query: 56 RRIGTSSIDTTCTIWDIEREA---VDTQLIAHDKEVYDIAWGGVG---VFASVSADGSVR 109
+R+ T S D T I+++E E +DT L H+ V+ + W + AS S DG V
Sbjct: 24 KRLATCSSDKTIKIFEVEGETHKLIDT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82
Query: 110 VFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR--FPTLPV 167
++ + S I + + + W + + + KV V++ + T P+
Sbjct: 83 IWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI 141
Query: 168 VELQRHQASVNAIAWAPHS------------SCHICTAGDDSQALIWDLSSMGQ 209
+ + H VN+ +WAP + S T G D+ IW +S Q
Sbjct: 142 I-IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 194
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 83 AHDKEVYDIAWGGVGV-FASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD 141
AH++ ++D G A+ S+D ++++F++ + H +I + + P+ R+ W
Sbjct: 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK-LIDTLTGHEGPVWRVDW--AH 65
Query: 142 PRYMATIIMDSAKVVVL-----DIRFPTLPVVELQRHQASVNAIAWAPH 185
P++ + S VL + R+ + V + H ASVN++ WAPH
Sbjct: 66 PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV--HSASVNSVQWAPH 112
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 23/174 (13%)
Query: 56 RRIGTSSIDTTCTIWDIEREA---VDTQLIAHDKEVYDIAWGGVG---VFASVSADGSVR 109
+R+ T S D T I+++E E +DT L H+ V+ + W + AS S DG V
Sbjct: 22 KRLATCSSDKTIKIFEVEGETHKLIDT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 110 VFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR--FPTLPV 167
++ + S I + + + W + + + KV V++ + T P+
Sbjct: 81 IWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI 139
Query: 168 VELQRHQASVNAIAWAPHS------------SCHICTAGDDSQALIWDLSSMGQ 209
+ + H VN+ +WAP + S T G D+ IW +S Q
Sbjct: 140 I-IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 192
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 83 AHDKEVYDIAWGGVGV-FASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD 141
AH++ ++D G A+ S+D ++++F++ + H +I + + P+ R+ W
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK-LIDTLTGHEGPVWRVDW--AH 63
Query: 142 PRYMATIIMDSAKVVVL-----DIRFPTLPVVELQRHQASVNAIAWAPH 185
P++ + S VL + R+ + V + H ASVN++ WAPH
Sbjct: 64 PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV--HSASVNSVQWAPH 110
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 23/174 (13%)
Query: 56 RRIGTSSIDTTCTIWDIEREA---VDTQLIAHDKEVYDIAWGGVG---VFASVSADGSVR 109
+R+ T S D T I+++E E +DT L H+ V+ + W + AS S DG V
Sbjct: 22 KRLATCSSDKTIKIFEVEGETHKLIDT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 110 VFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR--FPTLPV 167
++ + S I + + + W + + + KV V++ + T P+
Sbjct: 81 IWKEENGRWSQIAVHAVHS-ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI 139
Query: 168 VELQRHQASVNAIAWAPHS------------SCHICTAGDDSQALIWDLSSMGQ 209
+ + H VN+ +WAP + S T G D+ IW +S Q
Sbjct: 140 I-IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 192
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 83 AHDKEVYDIAWGGVGV-FASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD 141
AH++ ++D G A+ S+D ++++F++ + H +I + + P+ R+ W
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK-LIDTLTGHEGPVWRVDW--AH 63
Query: 142 PRYMATIIMDSAKVVVL-----DIRFPTLPVVELQRHQASVNAIAWAPH 185
P++ + S VL + R+ + V + H ASVN++ WAPH
Sbjct: 64 PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV--HSASVNSVQWAPH 110
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/188 (19%), Positives = 77/188 (40%), Gaps = 17/188 (9%)
Query: 39 SEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER---------EAVDTQLIAHDKEVY 89
S + + + +N + + + + IWD+ + Q ++ EV
Sbjct: 110 SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169
Query: 90 DIAWGG--VGVFASVSADGSVRVFDLRDKE---HSTIIYESSEPDTPLVRLGWNKQDPRY 144
+AW VFAS + ++DL+ K+ H + +S L + W+ ++
Sbjct: 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTR 229
Query: 145 MATIIM--DSAKVVVLDIRFPTLPVVEL-QRHQASVNAIAWAPHSSCHICTAGDDSQALI 201
+AT + +++ D+R P+ L Q HQ + ++ W + ++G D+ L+
Sbjct: 230 VATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLL 289
Query: 202 WDLSSMGQ 209
W+ S Q
Sbjct: 290 WNPESAEQ 297
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)
Query: 56 RRIGTSSIDTTCTIWDIEREA---VDTQLIAHDKEVYDIAWGGVG---VFASVSADGSVR 109
+R T S D T I+++E E +DT L H+ V+ + W + AS S DG V
Sbjct: 22 KRXATCSSDKTIKIFEVEGETHKLIDT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVX 80
Query: 110 VFDLRDKEHSTI-IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVV 168
++ + S I ++ V+ ++ P + VV T P++
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPII 140
Query: 169 ELQRHQASVNAIAWAPHS------------SCHICTAGDDSQALIWDLSSMGQ 209
+ H VN+ +WAP + S T G D+ IW +S Q
Sbjct: 141 -IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 192
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 13/110 (11%)
Query: 83 AHDKEVYDIAWGGVGV-FASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD 141
AH++ ++D G A+ S+D ++++F++ + H +I + + P+ R+ W
Sbjct: 7 AHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHK-LIDTLTGHEGPVWRVDW--AH 63
Query: 142 PRY---MATIIMDSAKVVVL---DIRFPTLPVVELQRHQASVNAIAWAPH 185
P++ +A+ D KV + + R+ + V + H ASVN++ WAPH
Sbjct: 64 PKFGTILASCSYD-GKVXIWKEENGRWSQIAVHAV--HSASVNSVQWAPH 110
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 77 VDTQLIAHDKEVYDIAWGGVGV-FASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRL 135
++T +H+ ++D G A+ S+D SV++FD+R+ +I + + P+ ++
Sbjct: 5 INTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-ILIADLRGHEGPVWQV 63
Query: 136 GWNKQDPRY---MATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICT 192
W P Y +A+ D ++ + E H +SVN++ WAPH I
Sbjct: 64 AW--AHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILA 121
Query: 193 AGDDSQAL 200
G A+
Sbjct: 122 CGSSDGAI 129
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Query: 21 SDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDI---EREAV 77
+D D + + +L G+K G +S + + R+ T S D TC +WD+ +R ++
Sbjct: 141 ADRDGNMPVSRVLTGHK-----GYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI 195
Query: 78 DTQLI--AHDKEVYDIAWGGV--GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLV 133
H +V ++ + +F S S D +VR++DLR + Y E D V
Sbjct: 196 FGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSV 255
Query: 134 RL 135
+
Sbjct: 256 KF 257
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 39 SEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWD--IEREAVDTQLIAHDKEVYDIAWGGV 96
S + + S N + S DTT +WD I AV T H+ ++ + +
Sbjct: 202 SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT-YHGHEGDINSVKFFPD 260
Query: 97 GV-FASVSADGSVRVFDLRDKEHSTIIYESSEPD 129
G F + S DG+ R+FD+R H +Y + EPD
Sbjct: 261 GQRFGTGSDDGTCRLFDMR-TGHQLQVY-NREPD 292
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 24/147 (16%)
Query: 68 TIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSE 127
T WD AV+ + +A E A GG G F + + RV DK + ++
Sbjct: 33 TTWDSGFCAVNPKFMALIXE----ASGG-GAFLVLPLGKTGRV----DKNVPLVXGHTA- 82
Query: 128 PDTPLVRLGWNKQDPRYMATIIMDSAKVV--------VLDIRFPTLPVVELQRHQASVNA 179
P++ + W + +A+ D +V VL +R PV+ L+ H V
Sbjct: 83 ---PVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR---EPVITLEGHTKRVGI 136
Query: 180 IAWAPHSSCHICTAGDDSQALIWDLSS 206
+AW P + + +AG D+ L+WD+ +
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDVGT 163
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 15/83 (18%)
Query: 136 GWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR----------HQASVNAIAWAPH 185
G+ +P++MA I S L LP+ + R H A V IAW PH
Sbjct: 38 GFCAVNPKFMALIXEASGGGAFL-----VLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPH 92
Query: 186 SSCHICTAGDDSQALIWDLSSMG 208
+ I + +D ++W++ G
Sbjct: 93 NDNVIASGSEDCTVMVWEIPDGG 115
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 93/208 (44%), Gaps = 21/208 (10%)
Query: 3 QKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEY-----CGPLTSFDWNEAEPRR 57
+K L+A+ S + +W I +E +SLL NK ++Y L+ F ++ +
Sbjct: 105 EKGILVASDSGAVELWEI------LEKESLLV-NKFAKYEHDDIVKTLSVF----SDGTQ 153
Query: 58 IGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAW--GGVGVFASVSADGSVRVFDLRD 115
+ D + +WD+ ++AV AH EV +A G +F S DG + ++D R
Sbjct: 154 AVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK 213
Query: 116 KEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQA 175
+ +T I + DT + W+ + A ++ V +++I+ P H
Sbjct: 214 PKPATRI-DFCASDTIPTSVTWHPEKDDTFA-CGDETGNVSLVNIKNPDSAQTS-AVHSQ 270
Query: 176 SVNAIAWAPHSSCHICTAGDDSQALIWD 203
++ +A++ HSS + + +D + D
Sbjct: 271 NITGLAYSYHSSPFLASISEDCTVAVLD 298
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 6/121 (4%)
Query: 41 YCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFA 100
+ GP++ ++N+ + + ++S D T IW H + + +W G
Sbjct: 246 HHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVI 304
Query: 101 SVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160
S S DGSVR++ L+ +T++ S P+ G QD + A MD +V V D+
Sbjct: 305 SCSMDGSVRLWSLK---QNTLLALSIVDGVPIFA-GRISQDGQKYAVAFMD-GQVNVYDL 359
Query: 161 R 161
+
Sbjct: 360 K 360
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 69/160 (43%), Gaps = 19/160 (11%)
Query: 52 EAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVF 111
+ + RR+ + + D +WD E E L H VY + + G+ V S S D S+RV+
Sbjct: 246 QYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHV-VSGSLDTSIRVW 304
Query: 112 DLRDKE--HSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE 169
D+ H+ ++S L + + DS V + DI+ +
Sbjct: 305 DVETGNCIHTLTGHQSLTSGMEL--------KDNILVSGNADST-VKIWDIKTGQC-LQT 354
Query: 170 LQ---RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSS 206
LQ +HQ++V + + + + T+ DD +WDL +
Sbjct: 355 LQGPNKHQSAVTCLQFNKN---FVITSSDDGTVKLWDLKT 391
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 54 EPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFD 112
+ +I TSS DTTC +WDIE T H +V ++ +F S + D S +++D
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 113 LRD 115
+R+
Sbjct: 213 VRE 215
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 54 EPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVG-VFASVSADGSVRVFD 112
+ R + + D + +WD+ H+ ++ I + G FA+ S D + R+FD
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Query: 113 LR-DKEHSTIIYES 125
LR D+E T +++
Sbjct: 255 LRADQELMTYSHDN 268
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 54 EPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFD 112
+ +I TSS DTTC +WDIE T H +V ++ +F S + D S +++D
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 113 LRD 115
+R+
Sbjct: 213 VRE 215
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 54 EPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVG-VFASVSADGSVRVFD 112
+ R + + D + +WD+ H+ ++ I + G FA+ S D + R+FD
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Query: 113 LR-DKEHSTIIYES 125
LR D+E T +++
Sbjct: 255 LRADQELMTYSHDN 268
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 54 EPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFD 112
+ +I TSS DTTC +WDIE T H +V ++ +F S + D S +++D
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 113 LRD 115
+R+
Sbjct: 213 VRE 215
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 54 EPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVG-VFASVSADGSVRVFD 112
+ R + + D + +WD+ H+ ++ I + G FA+ S D + R+FD
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Query: 113 LR-DKEHSTIIYES 125
LR D+E T +++
Sbjct: 255 LRADQELMTYSHDN 268
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 54 EPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFD 112
+ +I TSS DTTC +WDIE T H +V ++ +F S + D S +++D
Sbjct: 164 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 223
Query: 113 LRD 115
+R+
Sbjct: 224 VRE 226
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 54 EPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVG-VFASVSADGSVRVFD 112
+ R + + D + +WD+ H+ ++ I + G FA+ S D + R+FD
Sbjct: 206 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 265
Query: 113 LR-DKEHSTIIYES 125
LR D+E T +++
Sbjct: 266 LRADQELMTYSHDN 279
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 54 EPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFD 112
+ +I TSS DTTC +WDIE T H +V ++ +F S + D S +++D
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 113 LRD 115
+R+
Sbjct: 213 VRE 215
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 54 EPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVG-VFASVSADGSVRVFD 112
+ R + + D + +WD+ H+ ++ I + G FA+ S D + R+FD
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Query: 113 LR-DKEHSTIIYES 125
LR D+E T +++
Sbjct: 255 LRADQELMTYSHDN 268
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 9/149 (6%)
Query: 60 TSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVG-VFASVSADGSVRVFDLRDKEH 118
+ S D T +WD+ + + H K+V +A+ S S D ++++++
Sbjct: 103 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK 162
Query: 119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL-DIRFPTLPVVELQRHQASV 177
T+ ES VR N +P ++ KV L + + T + H +
Sbjct: 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI----GHTGYL 218
Query: 178 NAIAWAPHSSCHIC-TAGDDSQALIWDLS 205
N + +P S +C + G D QA++WDL+
Sbjct: 219 NTVTVSPDGS--LCASGGKDGQAMLWDLN 245
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 9/149 (6%)
Query: 60 TSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVG-VFASVSADGSVRVFDLRDKEH 118
+ S D T +WD+ + + H K+V +A+ S S D ++++++
Sbjct: 80 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK 139
Query: 119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL-DIRFPTLPVVELQRHQASV 177
T+ ES VR N +P ++ KV L + + T + H +
Sbjct: 140 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI----GHTGYL 195
Query: 178 NAIAWAPHSSCHIC-TAGDDSQALIWDLS 205
N + +P S +C + G D QA++WDL+
Sbjct: 196 NTVTVSPDGS--LCASGGKDGQAMLWDLN 222
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 90/213 (42%), Gaps = 31/213 (14%)
Query: 13 DFLRVWRISDEDRRVELKSLLNGNKNSE--YCGPLTSFDWNEAEPRRIGTSSIDTTCTIW 70
D LR+ R ++ RRV L LN +++ E + G + + D E R + + D ++
Sbjct: 14 DPLRLRR-AESTRRV-LGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLY 71
Query: 71 DIEREAVDTQLIA-------------HDKEVYDIAW--GGVGVFASVSADGSVRVFDLRD 115
D+E + + H V + W G+F S S D +++V+D
Sbjct: 72 DLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT 131
Query: 116 KEHSTII-YES---SEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQ 171
+ + + +E S +P+ + + KV + D++ + + LQ
Sbjct: 132 LQTADVFNFEETVYSHHMSPV-------STKHCLVAVGTRGPKVQLCDLKSGSCSHI-LQ 183
Query: 172 RHQASVNAIAWAPHSSCHICTAGDDSQALIWDL 204
H+ + A++W+P + TA DS+ +WD+
Sbjct: 184 GHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 56 RRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVG-VFASVSADGSVRVFDLR 114
+ + T + D IWDIE + L H++++Y + + G S S D +VR++DLR
Sbjct: 136 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR 195
Query: 115 DKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA 153
+ S + T V G D +Y+A +D A
Sbjct: 196 TGQCSLTLSIEDGVTTVAVSPG----DGKYIAAGSLDRA 230
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 68 TIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSE 127
T WD AV+ + +A + + + GG + + G V DK + ++
Sbjct: 33 TTWDSGFCAVNPKFMAL---ICEASGGGAFLVLPLGKTGRV------DKNVPLVCGHTA- 82
Query: 128 PDTPLVRLGWNKQDPRYMATIIMDSAKVV--------VLDIRFPTLPVVELQRHQASVNA 179
P++ + W + +A+ D +V VL +R PV+ L+ H V
Sbjct: 83 ---PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR---EPVITLEGHTKRVGI 136
Query: 180 IAWAPHSSCHICTAGDDSQALIWDLSS 206
+AW P + + +AG D+ L+WD+ +
Sbjct: 137 VAWHPTAQNVLLSAGCDNVILVWDVGT 163
Score = 33.9 bits (76), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 15/83 (18%)
Query: 136 GWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR----------HQASVNAIAWAPH 185
G+ +P++MA I S L LP+ + R H A V IAW PH
Sbjct: 38 GFCAVNPKFMALICEASGGGAFL-----VLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPH 92
Query: 186 SSCHICTAGDDSQALIWDLSSMG 208
+ I + +D ++W++ G
Sbjct: 93 NDNVIASGSEDCTVMVWEIPDGG 115
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 27 VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDK 86
+E K +L G+ S C + + R I T S D+T +WD+ + LI H +
Sbjct: 163 LECKRILTGHTGSVLCL--------QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCE 214
Query: 87 EVYDIAWGGVGVFASVSADGSVRVFDL 113
V + + G+ + S D S+ V+D+
Sbjct: 215 AVLHLRFNN-GMMVTCSKDRSIAVWDM 240
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 13/105 (12%)
Query: 9 ATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCT 68
A+ ++VW S E LNG+K C + R + + S D T
Sbjct: 272 ASGDRTIKVWNTST----CEFVRTLNGHKRGIACL--------QYRDRLVVSGSSDNTIR 319
Query: 69 IWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDL 113
+WDIE A L H++ V I + + S + DG ++V+DL
Sbjct: 320 LWDIECGACLRVLEGHEELVRCIRFDNKRI-VSGAYDGKIKVWDL 363
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 34.3 bits (77), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 4/136 (2%)
Query: 73 EREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDK--EHSTIIYESSEPDT 130
+EAV T A ++ + + +V++ G ++++D R + E S I+ + +
Sbjct: 179 HKEAVRTIDNADSSTLHAVTFLRTPEILTVNSIGQLKIWDFRQQGNEPSQILSLTGD-RV 237
Query: 131 PLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHI 190
PL + + +AT D + + D+R T+PV L+ H+A + + + P + H+
Sbjct: 238 PLHCVDRHPNQQHVVATGGQD-GMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHL 296
Query: 191 CTAGDDSQALIWDLSS 206
T +D WD S+
Sbjct: 297 FTCSEDGSLWHWDAST 312
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 85/197 (43%), Gaps = 22/197 (11%)
Query: 60 TSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVG-VFASVSADGSVRVFDLRDKEH 118
++S D + +W+++ + + H K+V +A+ S D ++RV++++ +
Sbjct: 84 SASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECM 143
Query: 119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA---KVVVLDIRFPTLPVVELQRHQA 175
T+ + VR P A +I+ V V D+ L V +L+ H
Sbjct: 144 HTLSRGAHTDWVSCVRF-----SPSLDAPVIVSGGWDNLVKVWDLATGRL-VTDLKGHTN 197
Query: 176 SVNAIAWAPHSSCHICTAGD-DSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS 234
V ++ +P S +C + D D A +WDL+ + + AGA I Q+ +S
Sbjct: 198 YVTSVTVSPDGS--LCASSDKDGVARLWDLTKG--------EALSEMAAGAPINQICFSP 247
Query: 235 SQPDWVAIAFSTKLQIL 251
++ W+ A ++I
Sbjct: 248 NRY-WMCAATEKGIRIF 263
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 57 RIGTSSIDTTCTIWDIEREAVDTQLIAHDKEV--YDIAWGGVG-VFASVSADGSVRVFDL 113
+I T+S D TC +WD+E + H +V D+A G F S D V+D+
Sbjct: 168 QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM 227
Query: 114 RDKEHSTIIYESSEPDTPLVR 134
R + +E+ E D VR
Sbjct: 228 RSGQ-CVQAFETHESDVNSVR 247
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 55 PRRIGTSSIDTTC----TIWDIEREAVDTQLIAHDKEVYDIAWGGVG-VFASVSADGSVR 109
P G + + C +WD+ H+ +V + + G FAS S D + R
Sbjct: 206 PSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCR 265
Query: 110 VFDLR-DKE-----HSTIIYESSEPDTPL 132
++DLR D+E +II+ +S D L
Sbjct: 266 LYDLRADREVAIYSKESIIFGASSVDFSL 294
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 60 TSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVG-VFASVSADGSVRVFDLRDKE 117
++S D T +WD E + L H V DI++ G + AS SAD +++++D + E
Sbjct: 125 SASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE 183
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 62/131 (47%), Gaps = 21/131 (16%)
Query: 3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYC---GPLTSF----DWNEA 53
Q L+A+ S+ +RVW ++ ++ + EL+ +++ C P +S+ + +
Sbjct: 244 QDGTLIASCSNDQTVRVWVVATKECKAELRE----HRHVVECISWAPESSYSSISEATGS 299
Query: 54 EPRRIG-------TSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVF-ASVSAD 105
E ++ G + S D T +WD+ L+ HD V + + G F S + D
Sbjct: 300 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD 359
Query: 106 GSVRVFDLRDK 116
++RV+D ++K
Sbjct: 360 KTLRVWDYKNK 370
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 42/120 (35%), Gaps = 40/120 (33%)
Query: 84 HDKEVYDIAWGGV-GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDP 142
H + +YDIAW + G A+ D ++RVF +P++ + Q P
Sbjct: 251 HSRTIYDIAWCQLTGALATACGDDAIRVF-------------QEDPNS-------DPQQP 290
Query: 143 RYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIW 202
+ T + Q H VN +AW P + + DD + W
Sbjct: 291 TFSLTAHLH-------------------QAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 52 EAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVF 111
+ E +R ++S+DTT IWD+E + L H V + S +ADGS+R +
Sbjct: 319 DHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD-KFLVSAAADGSIRGW 377
Query: 112 DLRD 115
D D
Sbjct: 378 DAND 381
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 52 EAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVF 111
+ E + T + D ++D + QL HD V+ + + G+ S S D +VRV+
Sbjct: 129 QFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVW 188
Query: 112 DLR 114
D++
Sbjct: 189 DIK 191
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 14/146 (9%)
Query: 51 NEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVR 109
N++ + T S D +WD+ ++ + H V + + AS SADG++R
Sbjct: 716 NKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR 775
Query: 110 VFDLRDKEHSTII----YESSEPDTP-----LVR-LGWNKQDPRYMATIIMDSAKVVVLD 159
++D+R I + S D P +V+ W+ + I+ KV++ D
Sbjct: 776 LWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDK---IIVAAKNKVLLFD 832
Query: 160 IRFPTLPVVELQRHQASVNAIAWAPH 185
I L H +++ ++P+
Sbjct: 833 IHTSGLLAEIHTGHHSTIQYCDFSPY 858
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 16/147 (10%)
Query: 51 NEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVR 109
N++ + T S D +WD+ ++ + H V + + AS SADG++R
Sbjct: 709 NKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR 768
Query: 110 VFDLRD-KEHSTI----IYESSEPDTP-----LVR-LGWNKQDPRYMATIIMDSAKVVVL 158
++D+R E +I + SSE D P +V+ W+ + I+ KV++
Sbjct: 769 LWDVRSANERKSINVKRFFLSSE-DPPEDVEVIVKCCSWSADGDK---IIVAAKNKVLLF 824
Query: 159 DIRFPTLPVVELQRHQASVNAIAWAPH 185
DI L H +++ ++P+
Sbjct: 825 DIHTSGLLAEIHTGHHSTIQYCDFSPY 851
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 49/256 (19%), Positives = 115/256 (44%), Gaps = 25/256 (9%)
Query: 4 KPDLLATSS--DFLRVWRISDEDRR--VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIG 59
+P+LL ++S L W+++ +D++ V ++S + + C LT A+
Sbjct: 29 QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC-TLT------ADGAYAL 81
Query: 60 TSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAW-GGVGVFASVSADGSVRVFDLRDKEH 118
++S D T +WD+ + + H +V + + S S D +++V+ ++ +
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCL 141
Query: 119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPV-VELQRHQASV 177
+T++ + VR+ N++ TII +V + + H +++
Sbjct: 142 ATLLGHNDW--VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI 199
Query: 178 NAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP 237
N + +P + I +AG D + ++W+L++ + +A E+ L +S ++
Sbjct: 200 NTLTASPDGTL-IASAGKDGEIMLWNLAAK--------KAMYTLSAQDEVFSLAFSPNRY 250
Query: 238 DWVAIAFSTKLQILRV 253
W+A A +T +++ +
Sbjct: 251 -WLAAATATGIKVFSL 265
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 49/256 (19%), Positives = 115/256 (44%), Gaps = 25/256 (9%)
Query: 4 KPDLLATSS--DFLRVWRISDEDRR--VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIG 59
+P+LL ++S L W+++ +D++ V ++S + + C LT A+
Sbjct: 29 QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC-TLT------ADGAYAL 81
Query: 60 TSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAW-GGVGVFASVSADGSVRVFDLRDKEH 118
++S D T +WD+ + + H +V + + S S D +++V+ ++ +
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCL 141
Query: 119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPV-VELQRHQASV 177
+T++ + VR+ N++ TII +V + + H +++
Sbjct: 142 ATLLGHNDW--VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI 199
Query: 178 NAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP 237
N + +P + I +AG D + ++W+L++ + +A E+ L +S ++
Sbjct: 200 NTLTASPDGTL-IASAGKDGEIMLWNLAAK--------KAMYTLSAQDEVFSLAFSPNRY 250
Query: 238 DWVAIAFSTKLQILRV 253
W+A A +T +++ +
Sbjct: 251 -WLAAATATGIKVFSL 265
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 49/256 (19%), Positives = 115/256 (44%), Gaps = 25/256 (9%)
Query: 4 KPDLLATSS--DFLRVWRISDEDRR--VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIG 59
+P+LL ++S L W+++ +D++ V ++S + + C LT A+
Sbjct: 23 QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC-TLT------ADGAYAL 75
Query: 60 TSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAW-GGVGVFASVSADGSVRVFDLRDKEH 118
++S D T +WD+ + + H +V + + S S D +++V+ ++ +
Sbjct: 76 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCL 135
Query: 119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPV-VELQRHQASV 177
+T++ + VR+ N++ TII +V + + H +++
Sbjct: 136 ATLLGHNDW--VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI 193
Query: 178 NAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP 237
N + +P + I +AG D + ++W+L++ + +A E+ L +S ++
Sbjct: 194 NTLTASPDGTL-IASAGKDGEIMLWNLAAK--------KAMYTLSAQDEVFSLAFSPNRY 244
Query: 238 DWVAIAFSTKLQILRV 253
W+A A +T +++ +
Sbjct: 245 -WLAAATATGIKVFSL 259
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 49/256 (19%), Positives = 115/256 (44%), Gaps = 25/256 (9%)
Query: 4 KPDLLATSS--DFLRVWRISDEDRR--VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIG 59
+P+LL ++S L W+++ +D++ V ++S + + C LT A+
Sbjct: 29 QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC-TLT------ADGAYAL 81
Query: 60 TSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAW-GGVGVFASVSADGSVRVFDLRDKEH 118
++S D T +WD+ + + H +V + + S S D +++V+ ++ +
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCL 141
Query: 119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPV-VELQRHQASV 177
+T++ + VR+ N++ TII +V + + H +++
Sbjct: 142 ATLLGHNDW--VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI 199
Query: 178 NAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP 237
N + +P + I +AG D + ++W+L++ + +A E+ L +S ++
Sbjct: 200 NTLTASPDGTL-IASAGKDGEIMLWNLAAK--------KAMYTLSAQDEVFSLAFSPNRY 250
Query: 238 DWVAIAFSTKLQILRV 253
W+A A +T +++ +
Sbjct: 251 -WLAAATATGIKVFSL 265
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 49/256 (19%), Positives = 115/256 (44%), Gaps = 25/256 (9%)
Query: 4 KPDLLATSS--DFLRVWRISDEDRR--VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIG 59
+P+LL ++S L W+++ +D++ V ++S + + C LT A+
Sbjct: 29 QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC-TLT------ADGAYAL 81
Query: 60 TSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAW-GGVGVFASVSADGSVRVFDLRDKEH 118
++S D T +WD+ + + H +V + + S S D +++V+ ++ +
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCL 141
Query: 119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPV-VELQRHQASV 177
+T++ + VR+ N++ TII +V + + H +++
Sbjct: 142 ATLLGHNDW--VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI 199
Query: 178 NAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP 237
N + +P + I +AG D + ++W+L++ + +A E+ L +S ++
Sbjct: 200 NTLTASPDGTL-IASAGKDGEIMLWNLAAK--------KAMYTLSAQDEVFSLAFSPNRY 250
Query: 238 DWVAIAFSTKLQILRV 253
W+A A +T +++ +
Sbjct: 251 -WLAAATATGIKVFSL 265
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 52 EAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVF 111
+ E +R ++S DTT IWD+E + L H V + S +ADGS+R +
Sbjct: 319 DHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSD-KFLVSAAADGSIRGW 377
Query: 112 DLRD 115
D D
Sbjct: 378 DAND 381
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 52 EAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVF 111
+ E + T + D ++D + QL HD V+ + + G+ S S D +VRV+
Sbjct: 129 QFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVW 188
Query: 112 DLR 114
D++
Sbjct: 189 DIK 191
>pdb|1Y8N|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8O|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8P|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|2Q8I|A Chain A, Pyruvate Dehydrogenase Kinase Isoform 3 In Complex With
Antitumor Drug Radicicol
pdb|2PNR|A Chain A, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|B Chain B, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|E Chain E, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|F Chain F, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
Length = 419
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 49 DWNEAEPRRIGTSSIDTTCTIWDIEREAVDT 79
D N P+ IG SID TC + D+ ++A +T
Sbjct: 188 DTNPVHPKHIG--SIDPTCNVADVVKDAYET 216
>pdb|1JM6|A Chain A, Pyruvate Dehydrogenase Kinase, Isozyme 2, Containing Adp
pdb|1JM6|B Chain B, Pyruvate Dehydrogenase Kinase, Isozyme 2, Containing Adp
pdb|3CRK|A Chain A, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRK|B Chain B, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|A Chain A, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|B Chain B, Crystal Structure Of The Pdhk2-L2 Complex
Length = 407
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 51 NEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDK 86
N A P+ IG SID C++ D+ ++A D + DK
Sbjct: 181 NPAHPKHIG--SIDPNCSVSDVVKDAYDMAKLLCDK 214
>pdb|3EQZ|A Chain A, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
pdb|3EQZ|B Chain B, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
Length = 135
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 140 QDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQA 175
Q PR T+ ++ +++LD+ P + +E+ RH A
Sbjct: 34 QHPRAFLTLSLNKQDIIILDLMMPDMDGIEVIRHLA 69
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 10/114 (8%)
Query: 8 LATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTC 67
L SS + + RI D LK+L++ + P SF + I +++D T
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDN------PPVSFVKFSPNGKYILAATLDNTL 219
Query: 68 TIWDIEREAVDTQLIAHDKEVY----DIAWGGVGVFASVSADGSVRVFDLRDKE 117
+WD + H E Y + + G S S D V +++L+ KE
Sbjct: 220 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKE 273
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 49/256 (19%), Positives = 111/256 (43%), Gaps = 25/256 (9%)
Query: 4 KPDLLATSS--DFLRVWRISDEDRR--VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIG 59
+P+LL ++S L W+++ +D++ V ++S + + C LT A+
Sbjct: 29 QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC-TLT------ADGAYAL 81
Query: 60 TSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAW-GGVGVFASVSADGSVRVFDLRDKEH 118
++S D T +WD+ + + H +V + S S D +++V+ ++ +
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCL 141
Query: 119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPV-VELQRHQASV 177
+T++ + VR+ N++ TII V + + H +++
Sbjct: 142 ATLLGHNDW--VSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNI 199
Query: 178 NAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP 237
N + +P + I +AG D + +W+L++ +A E+ L +S ++
Sbjct: 200 NTLTASPDGTL-IASAGKDGEIXLWNLAAK--------KAXYTLSAQDEVFSLAFSPNRY 250
Query: 238 DWVAIAFSTKLQILRV 253
W+A A +T +++ +
Sbjct: 251 -WLAAATATGIKVFSL 265
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,624,115
Number of Sequences: 62578
Number of extensions: 297536
Number of successful extensions: 871
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 696
Number of HSP's gapped (non-prelim): 187
length of query: 253
length of database: 14,973,337
effective HSP length: 97
effective length of query: 156
effective length of database: 8,903,271
effective search space: 1388910276
effective search space used: 1388910276
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)