Query 035558
Match_columns 253
No_of_seqs 508 out of 1237
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 04:02:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035558.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035558hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.6E-44 3.5E-49 265.9 20.8 230 1-252 124-479 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.2E-44 2.6E-49 269.2 17.3 227 3-252 185-416 (459)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.7E-44 3.6E-49 268.5 16.7 228 2-252 227-458 (459)
4 KOG0315 G-protein beta subunit 100.0 1.6E-40 3.4E-45 232.2 22.5 231 3-253 50-287 (311)
5 KOG0279 G protein beta subunit 100.0 1.1E-39 2.3E-44 231.2 25.3 232 2-253 25-261 (315)
6 KOG0263 Transcription initiati 100.0 1.7E-40 3.8E-45 264.0 21.5 231 3-253 388-648 (707)
7 KOG0264 Nucleosome remodeling 100.0 2.6E-38 5.6E-43 237.5 22.5 245 2-253 134-403 (422)
8 KOG0271 Notchless-like WD40 re 100.0 5.7E-39 1.2E-43 236.7 18.5 209 28-253 106-438 (480)
9 KOG0279 G protein beta subunit 100.0 2.1E-37 4.6E-42 219.6 25.0 231 3-253 73-312 (315)
10 KOG0315 G-protein beta subunit 100.0 3.4E-37 7.3E-42 215.6 24.3 232 3-253 8-244 (311)
11 KOG0286 G-protein beta subunit 100.0 6.3E-37 1.4E-41 218.6 23.5 229 3-252 107-343 (343)
12 KOG0286 G-protein beta subunit 100.0 1.8E-36 3.8E-41 216.3 24.7 230 3-253 65-302 (343)
13 KOG0277 Peroxisomal targeting 100.0 1.1E-37 2.4E-42 218.5 17.4 229 6-252 75-307 (311)
14 KOG0291 WD40-repeat-containing 100.0 3.1E-36 6.7E-41 239.0 25.8 228 4-253 318-549 (893)
15 KOG0273 Beta-transducin family 100.0 1.7E-36 3.7E-41 228.8 22.8 227 3-253 245-481 (524)
16 KOG0284 Polyadenylation factor 100.0 4.4E-38 9.6E-43 233.5 14.0 226 3-253 106-336 (464)
17 KOG0284 Polyadenylation factor 100.0 5.6E-38 1.2E-42 233.0 14.5 228 3-252 148-378 (464)
18 KOG0645 WD40 repeat protein [G 100.0 4.1E-35 8.9E-40 207.3 26.7 228 2-252 24-259 (312)
19 KOG0295 WD40 repeat-containing 100.0 9.7E-37 2.1E-41 223.4 18.4 226 5-253 120-363 (406)
20 KOG0290 Conserved WD40 repeat- 100.0 5.3E-36 1.1E-40 213.9 20.7 248 4-253 112-364 (364)
21 KOG0281 Beta-TrCP (transducin 100.0 1.7E-37 3.6E-42 226.9 11.5 220 4-253 206-427 (499)
22 KOG0277 Peroxisomal targeting 100.0 3.5E-35 7.7E-40 206.0 20.3 222 14-253 39-264 (311)
23 KOG0265 U5 snRNP-specific prot 100.0 7.9E-35 1.7E-39 208.6 21.4 230 2-252 57-294 (338)
24 KOG0276 Vesicle coat complex C 100.0 7.9E-35 1.7E-39 226.9 21.6 230 2-252 23-255 (794)
25 KOG0295 WD40 repeat-containing 100.0 6.4E-35 1.4E-39 213.9 19.4 227 4-252 161-404 (406)
26 KOG0266 WD40 repeat-containing 100.0 6.5E-34 1.4E-38 229.3 27.1 230 3-253 169-408 (456)
27 KOG0285 Pleiotropic regulator 100.0 1.3E-34 2.8E-39 212.2 20.1 223 4-252 162-387 (460)
28 KOG0263 Transcription initiati 100.0 1.1E-34 2.4E-39 231.0 21.2 223 3-243 461-703 (707)
29 KOG0266 WD40 repeat-containing 100.0 5.7E-34 1.2E-38 229.7 25.6 228 3-252 213-452 (456)
30 KOG0285 Pleiotropic regulator 100.0 5.3E-35 1.1E-39 214.3 17.2 207 26-253 140-347 (460)
31 KOG0313 Microtubule binding pr 100.0 3.5E-34 7.6E-39 211.1 21.5 227 7-252 161-416 (423)
32 KOG0282 mRNA splicing factor [ 100.0 5.4E-35 1.2E-39 221.3 16.9 228 2-252 224-503 (503)
33 PLN00181 protein SPA1-RELATED; 100.0 5.9E-33 1.3E-37 238.6 31.5 236 2-253 542-792 (793)
34 KOG0319 WD40-repeat-containing 100.0 4.5E-34 9.7E-39 226.1 20.3 230 4-252 376-617 (775)
35 PLN00181 protein SPA1-RELATED; 100.0 1.9E-32 4.1E-37 235.5 31.5 236 3-252 493-736 (793)
36 KOG0310 Conserved WD40 repeat- 100.0 1.5E-33 3.2E-38 213.7 21.5 224 3-250 78-305 (487)
37 KOG0319 WD40-repeat-containing 100.0 1.1E-33 2.4E-38 223.9 21.6 227 5-253 336-576 (775)
38 PTZ00421 coronin; Provisional 100.0 5.5E-32 1.2E-36 217.8 30.5 231 5-253 33-289 (493)
39 KOG0292 Vesicle coat complex C 100.0 1.3E-33 2.9E-38 227.8 20.4 231 2-253 19-279 (1202)
40 KOG0645 WD40 repeat protein [G 100.0 2.2E-32 4.8E-37 193.5 24.0 232 3-253 71-310 (312)
41 KOG0316 Conserved WD40 repeat- 100.0 4.5E-33 9.8E-38 193.6 19.1 224 4-253 28-256 (307)
42 KOG0643 Translation initiation 100.0 1.4E-32 3E-37 194.4 20.8 236 3-252 20-315 (327)
43 KOG0296 Angio-associated migra 100.0 8.7E-32 1.9E-36 197.6 25.2 228 1-253 73-397 (399)
44 KOG0273 Beta-transducin family 100.0 7.7E-32 1.7E-36 203.8 24.7 225 4-253 287-522 (524)
45 cd00200 WD40 WD40 domain, foun 100.0 2.5E-31 5.4E-36 202.7 27.9 225 4-252 62-289 (289)
46 KOG0318 WD40 repeat stress pro 100.0 1.4E-31 3E-36 205.0 26.0 233 1-253 199-559 (603)
47 KOG0310 Conserved WD40 repeat- 100.0 1.2E-32 2.7E-37 208.8 19.9 230 1-253 35-267 (487)
48 KOG1332 Vesicle coat complex C 100.0 5.3E-32 1.1E-36 189.1 20.5 237 5-252 23-284 (299)
49 KOG0292 Vesicle coat complex C 100.0 5.5E-32 1.2E-36 218.6 23.5 230 3-253 61-320 (1202)
50 PTZ00420 coronin; Provisional 100.0 6.5E-31 1.4E-35 212.9 29.6 216 14-253 55-292 (568)
51 KOG0281 Beta-TrCP (transducin 100.0 3.8E-33 8.2E-38 204.2 14.9 224 4-253 246-476 (499)
52 KOG0316 Conserved WD40 repeat- 100.0 6.6E-32 1.4E-36 187.8 20.0 202 28-252 8-211 (307)
53 KOG0276 Vesicle coat complex C 100.0 6.3E-32 1.4E-36 210.8 21.8 224 5-252 67-296 (794)
54 KOG0305 Anaphase promoting com 100.0 1.1E-31 2.3E-36 210.0 23.1 233 5-253 188-460 (484)
55 cd00200 WD40 WD40 domain, foun 100.0 1.4E-30 3.1E-35 198.5 28.9 226 4-253 20-248 (289)
56 KOG0291 WD40-repeat-containing 100.0 4.2E-31 9E-36 210.1 25.4 233 3-253 360-611 (893)
57 KOG0265 U5 snRNP-specific prot 100.0 8.4E-32 1.8E-36 193.1 19.5 207 27-253 37-245 (338)
58 KOG0269 WD40 repeat-containing 100.0 2E-32 4.3E-37 218.0 16.3 228 4-248 99-334 (839)
59 KOG0282 mRNA splicing factor [ 100.0 1.5E-32 3.2E-37 208.2 14.0 213 28-252 205-460 (503)
60 KOG0264 Nucleosome remodeling 100.0 1.4E-31 3E-36 201.4 18.3 204 43-253 125-346 (422)
61 KOG0269 WD40 repeat-containing 100.0 6.3E-32 1.4E-36 215.1 17.2 235 6-253 52-295 (839)
62 PTZ00421 coronin; Provisional 100.0 4.6E-30 1E-34 206.7 28.2 218 1-235 84-314 (493)
63 KOG0293 WD40 repeat-containing 100.0 2.7E-31 5.8E-36 198.1 18.8 234 3-253 234-512 (519)
64 KOG0289 mRNA splicing factor [ 100.0 1.1E-30 2.4E-35 195.8 21.9 226 5-251 231-459 (506)
65 KOG0283 WD40 repeat-containing 100.0 7.4E-31 1.6E-35 210.8 22.2 204 28-253 360-575 (712)
66 KOG0268 Sof1-like rRNA process 100.0 8.5E-32 1.8E-36 197.7 15.0 226 2-252 76-343 (433)
67 KOG0308 Conserved WD40 repeat- 100.0 3.5E-31 7.5E-36 207.4 18.0 235 1-252 33-283 (735)
68 KOG0302 Ribosome Assembly prot 100.0 1.5E-30 3.1E-35 192.1 19.5 239 6-252 166-436 (440)
69 KOG0270 WD40 repeat-containing 100.0 1.8E-30 3.9E-35 195.0 20.2 237 4-253 191-448 (463)
70 KOG0318 WD40 repeat stress pro 100.0 2.7E-29 5.8E-34 192.5 26.2 230 2-252 113-390 (603)
71 KOG0313 Microtubule binding pr 100.0 6.6E-30 1.4E-34 188.7 21.4 229 5-253 115-375 (423)
72 KOG1446 Histone H3 (Lys4) meth 100.0 8.9E-29 1.9E-33 178.8 26.4 226 3-253 24-261 (311)
73 KOG0278 Serine/threonine kinas 100.0 1.8E-31 4E-36 187.2 12.1 220 7-253 73-296 (334)
74 KOG0283 WD40 repeat-containing 100.0 1.4E-30 3.1E-35 209.2 18.9 201 43-253 268-531 (712)
75 KOG0640 mRNA cleavage stimulat 100.0 4.9E-30 1.1E-34 185.3 17.9 240 3-252 122-424 (430)
76 KOG0643 Translation initiation 100.0 3.2E-29 7E-34 177.4 21.4 204 32-253 5-219 (327)
77 KOG0772 Uncharacterized conser 100.0 1.4E-29 3.1E-34 193.7 21.2 241 3-251 177-484 (641)
78 KOG0647 mRNA export protein (c 100.0 4.7E-29 1E-33 179.3 22.4 226 1-245 36-315 (347)
79 KOG0306 WD40-repeat-containing 100.0 2.2E-29 4.7E-34 200.3 21.5 226 4-253 423-663 (888)
80 KOG0288 WD40 repeat protein Ti 100.0 4.7E-30 1E-34 191.3 16.1 226 1-252 228-459 (459)
81 KOG0274 Cdc4 and related F-box 100.0 4.9E-29 1.1E-33 201.3 22.9 220 3-253 259-481 (537)
82 KOG0294 WD40 repeat-containing 100.0 1E-28 2.2E-33 178.5 21.9 223 4-253 52-280 (362)
83 KOG0641 WD40 repeat protein [G 100.0 7.1E-28 1.5E-32 167.3 24.6 238 3-253 42-348 (350)
84 KOG0274 Cdc4 and related F-box 100.0 8.6E-29 1.9E-33 199.9 23.2 219 5-253 218-440 (537)
85 KOG0306 WD40-repeat-containing 100.0 5E-29 1.1E-33 198.3 21.1 226 4-252 384-620 (888)
86 KOG0275 Conserved WD40 repeat- 100.0 2E-30 4.3E-35 188.7 11.7 231 3-252 223-507 (508)
87 KOG0296 Angio-associated migra 100.0 2.9E-28 6.2E-33 179.2 21.6 168 28-208 55-223 (399)
88 KOG0300 WD40 repeat-containing 100.0 6.8E-29 1.5E-33 180.1 18.1 223 6-253 161-427 (481)
89 KOG0640 mRNA cleavage stimulat 100.0 1.5E-29 3.2E-34 182.8 14.5 207 31-253 106-334 (430)
90 KOG1407 WD40 repeat protein [F 100.0 5.5E-28 1.2E-32 170.6 21.3 225 3-250 30-257 (313)
91 PTZ00420 coronin; Provisional 100.0 1.6E-27 3.5E-32 193.2 27.0 218 1-236 83-318 (568)
92 KOG0288 WD40 repeat protein Ti 100.0 1.7E-29 3.6E-34 188.4 11.7 228 4-253 186-416 (459)
93 KOG0307 Vesicle coat complex C 100.0 3.1E-29 6.7E-34 207.5 13.8 234 7-253 82-326 (1049)
94 KOG4283 Transcription-coupled 100.0 6.6E-28 1.4E-32 173.2 18.0 211 32-253 38-275 (397)
95 KOG0973 Histone transcription 100.0 2.1E-27 4.6E-32 195.7 23.1 237 3-253 79-354 (942)
96 KOG0275 Conserved WD40 repeat- 100.0 7.7E-29 1.7E-33 180.4 12.1 199 43-253 214-422 (508)
97 KOG1036 Mitotic spindle checkp 100.0 8.1E-27 1.8E-31 168.2 22.1 212 1-241 22-291 (323)
98 KOG2445 Nuclear pore complex c 100.0 1.3E-26 2.8E-31 167.2 23.0 242 4-252 24-316 (361)
99 KOG0268 Sof1-like rRNA process 100.0 1.4E-28 3E-33 180.9 12.4 208 29-253 58-301 (433)
100 KOG1446 Histone H3 (Lys4) meth 100.0 6.1E-26 1.3E-30 164.3 24.9 221 6-251 70-300 (311)
101 KOG0289 mRNA splicing factor [ 100.0 2.1E-26 4.6E-31 173.0 22.8 227 5-253 273-505 (506)
102 KOG0646 WD40 repeat protein [G 100.0 8.7E-27 1.9E-31 176.3 20.9 235 5-253 50-306 (476)
103 KOG0267 Microtubule severing p 100.0 3.8E-29 8.3E-34 198.1 8.5 215 5-243 40-257 (825)
104 KOG0299 U3 snoRNP-associated p 100.0 7.6E-27 1.7E-31 176.4 20.4 223 3-248 212-450 (479)
105 KOG1407 WD40 repeat protein [F 100.0 4.7E-26 1E-30 160.9 22.3 213 1-240 73-288 (313)
106 KOG0302 Ribosome Assembly prot 100.0 9.1E-27 2E-31 172.1 19.1 205 43-253 152-377 (440)
107 KOG0646 WD40 repeat protein [G 100.0 1E-26 2.2E-31 176.0 19.0 211 3-237 91-332 (476)
108 KOG4328 WD40 protein [Function 100.0 1.5E-26 3.2E-31 174.8 17.7 204 43-252 187-397 (498)
109 KOG0299 U3 snoRNP-associated p 100.0 4.7E-26 1E-30 172.2 20.0 240 3-253 152-409 (479)
110 KOG0639 Transducin-like enhanc 99.9 7.2E-27 1.6E-31 178.8 15.2 226 3-253 475-703 (705)
111 KOG0772 Uncharacterized conser 99.9 2.2E-26 4.8E-31 176.4 17.7 212 30-253 160-393 (641)
112 KOG0647 mRNA export protein (c 99.9 8E-26 1.7E-30 162.7 19.4 197 43-252 28-279 (347)
113 KOG1332 Vesicle coat complex C 99.9 9.3E-27 2E-31 163.0 14.0 208 32-252 6-239 (299)
114 KOG0301 Phospholipase A2-activ 99.9 4.1E-26 8.9E-31 180.3 19.3 220 5-253 25-248 (745)
115 KOG1007 WD repeat protein TSSC 99.9 2.6E-25 5.6E-30 159.4 20.7 241 1-252 72-359 (370)
116 KOG0278 Serine/threonine kinas 99.9 2E-26 4.3E-31 162.0 14.7 189 3-210 110-302 (334)
117 KOG0301 Phospholipase A2-activ 99.9 1.2E-25 2.5E-30 177.7 20.1 212 6-252 72-286 (745)
118 KOG1408 WD40 repeat protein [F 99.9 6.1E-26 1.3E-30 180.4 18.6 230 3-253 469-712 (1080)
119 KOG0300 WD40 repeat-containing 99.9 3E-26 6.5E-31 166.5 14.5 211 26-253 137-385 (481)
120 KOG0308 Conserved WD40 repeat- 99.9 1.1E-25 2.3E-30 176.9 18.4 228 4-252 84-325 (735)
121 KOG0321 WD40 repeat-containing 99.9 3.3E-25 7.2E-30 173.8 20.6 232 4-253 111-390 (720)
122 KOG4283 Transcription-coupled 99.9 3.5E-25 7.6E-30 159.3 18.8 204 1-210 52-281 (397)
123 KOG4328 WD40 protein [Function 99.9 3.1E-25 6.8E-30 167.7 18.8 235 2-252 196-448 (498)
124 KOG0267 Microtubule severing p 99.9 4.1E-27 8.9E-32 186.7 8.8 210 14-253 15-225 (825)
125 KOG0270 WD40 repeat-containing 99.9 3.6E-25 7.8E-30 166.7 18.4 199 44-253 175-403 (463)
126 KOG1034 Transcriptional repres 99.9 2.2E-24 4.7E-29 157.1 21.2 238 4-252 54-381 (385)
127 KOG4378 Nuclear protein COP1 [ 99.9 6.2E-25 1.4E-29 168.0 18.3 209 6-236 92-305 (673)
128 KOG1274 WD40 repeat protein [G 99.9 5.5E-24 1.2E-28 173.1 24.0 227 4-253 24-261 (933)
129 KOG2096 WD40 repeat protein [G 99.9 3.7E-24 8E-29 155.5 19.9 209 30-252 79-358 (420)
130 KOG1539 WD repeat protein [Gen 99.9 5.4E-24 1.2E-28 171.6 21.6 218 14-252 423-646 (910)
131 KOG0973 Histone transcription 99.9 1.1E-24 2.4E-29 179.9 16.5 193 43-241 14-236 (942)
132 KOG0293 WD40 repeat-containing 99.9 4.7E-24 1E-28 159.7 18.2 205 28-253 215-424 (519)
133 KOG4378 Nuclear protein COP1 [ 99.9 2.2E-24 4.7E-29 165.1 16.5 221 14-253 58-279 (673)
134 KOG0305 Anaphase promoting com 99.9 3.5E-24 7.6E-29 168.1 18.1 187 5-207 270-463 (484)
135 KOG1445 Tumor-specific antigen 99.9 1.8E-24 4E-29 170.2 16.4 114 131-252 629-748 (1012)
136 KOG2106 Uncharacterized conser 99.9 1E-22 2.2E-27 156.1 24.9 233 2-252 210-519 (626)
137 KOG0639 Transducin-like enhanc 99.9 2E-24 4.3E-29 165.5 15.2 228 5-253 431-662 (705)
138 KOG2055 WD40 repeat protein [G 99.9 1.8E-23 3.9E-28 158.4 20.0 235 2-253 267-511 (514)
139 KOG0641 WD40 repeat protein [G 99.9 1.2E-22 2.5E-27 141.5 21.1 200 43-253 33-302 (350)
140 KOG1274 WD40 repeat protein [G 99.9 6.3E-23 1.4E-27 167.0 22.7 210 6-240 67-286 (933)
141 KOG0321 WD40 repeat-containing 99.9 5.1E-23 1.1E-27 161.6 20.2 237 2-253 61-346 (720)
142 KOG2919 Guanine nucleotide-bin 99.9 4.8E-23 1E-27 150.0 18.4 227 3-247 121-362 (406)
143 KOG1188 WD40 repeat protein [G 99.9 2.9E-23 6.2E-28 152.0 16.9 235 7-252 43-344 (376)
144 KOG0290 Conserved WD40 repeat- 99.9 8E-23 1.7E-27 146.8 18.3 237 2-253 56-317 (364)
145 KOG1188 WD40 repeat protein [G 99.9 4.7E-23 1E-27 150.9 17.1 193 56-253 41-241 (376)
146 KOG1036 Mitotic spindle checkp 99.9 3.8E-22 8.2E-27 144.2 20.9 190 43-250 14-203 (323)
147 KOG0307 Vesicle coat complex C 99.9 6.4E-24 1.4E-28 176.3 13.3 224 14-253 40-283 (1049)
148 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.9E-21 4.2E-26 150.0 26.4 228 6-253 2-236 (300)
149 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.3E-21 7.1E-26 148.7 27.5 225 2-253 40-278 (300)
150 KOG0303 Actin-binding protein 99.9 3.3E-22 7.1E-27 149.1 20.0 208 28-253 72-293 (472)
151 KOG2048 WD40 repeat protein [G 99.9 1.7E-21 3.7E-26 154.0 25.0 224 7-252 39-273 (691)
152 KOG0294 WD40 repeat-containing 99.9 5.6E-22 1.2E-26 143.9 20.5 219 8-252 5-235 (362)
153 KOG1539 WD repeat protein [Gen 99.9 2.6E-21 5.5E-26 156.3 25.4 233 7-253 175-605 (910)
154 KOG1273 WD40 repeat protein [G 99.9 5.5E-22 1.2E-26 144.1 18.9 195 45-253 26-225 (405)
155 KOG1273 WD40 repeat protein [G 99.9 8.1E-22 1.8E-26 143.2 18.7 235 3-252 33-278 (405)
156 KOG1408 WD40 repeat protein [F 99.9 7.3E-22 1.6E-26 157.5 18.8 201 43-253 460-670 (1080)
157 KOG1587 Cytoplasmic dynein int 99.9 2.5E-21 5.4E-26 156.0 21.4 223 14-253 223-471 (555)
158 KOG2919 Guanine nucleotide-bin 99.9 4.1E-21 9E-26 140.0 20.0 239 1-253 58-326 (406)
159 KOG4227 WD40 repeat protein [G 99.9 1.8E-21 3.8E-26 145.6 18.5 242 3-252 66-385 (609)
160 KOG1063 RNA polymerase II elon 99.9 2.2E-21 4.8E-26 153.8 19.8 237 4-253 327-647 (764)
161 KOG2445 Nuclear pore complex c 99.9 1.4E-20 2.9E-25 136.4 21.7 209 34-253 10-255 (361)
162 KOG0771 Prolactin regulatory e 99.9 5.5E-22 1.2E-26 148.9 14.7 197 46-253 148-353 (398)
163 KOG1007 WD repeat protein TSSC 99.9 2.4E-21 5.3E-26 139.2 16.9 197 3-206 133-362 (370)
164 KOG0642 Cell-cycle nuclear pro 99.9 1.3E-21 2.8E-26 151.8 15.8 232 4-253 305-560 (577)
165 KOG2048 WD40 repeat protein [G 99.9 2.1E-20 4.6E-25 147.9 22.7 228 3-250 79-315 (691)
166 KOG1538 Uncharacterized conser 99.9 9.2E-21 2E-25 150.4 20.6 229 2-253 22-292 (1081)
167 KOG0303 Actin-binding protein 99.9 9.8E-21 2.1E-25 141.3 18.8 197 1-208 90-297 (472)
168 KOG1587 Cytoplasmic dynein int 99.9 3.6E-20 7.7E-25 149.4 22.4 239 1-253 251-515 (555)
169 KOG0650 WD40 repeat nucleolar 99.9 1.3E-20 2.9E-25 147.4 19.2 225 4-252 411-678 (733)
170 KOG1063 RNA polymerase II elon 99.9 8.4E-20 1.8E-24 145.0 22.7 233 5-253 206-601 (764)
171 KOG2110 Uncharacterized conser 99.9 3.3E-19 7.2E-24 132.1 23.5 227 3-253 15-247 (391)
172 KOG1034 Transcriptional repres 99.9 1.4E-20 3E-25 137.5 15.5 188 6-205 106-383 (385)
173 KOG1009 Chromatin assembly com 99.9 8.9E-20 1.9E-24 136.5 18.6 228 7-251 28-369 (434)
174 KOG1310 WD40 repeat protein [G 99.9 3E-20 6.6E-25 144.3 15.9 219 28-253 41-302 (758)
175 KOG2106 Uncharacterized conser 99.9 3.5E-19 7.6E-24 137.0 21.1 226 5-253 380-625 (626)
176 KOG0649 WD40 repeat protein [G 99.8 1.5E-19 3.2E-24 127.2 16.0 201 43-253 11-234 (325)
177 KOG2096 WD40 repeat protein [G 99.8 1E-18 2.2E-23 127.5 20.9 238 2-252 142-400 (420)
178 KOG0322 G-protein beta subunit 99.8 3.3E-19 7.2E-24 126.7 16.2 228 6-253 26-322 (323)
179 KOG2055 WD40 repeat protein [G 99.8 7.3E-19 1.6E-23 133.7 19.0 198 43-252 214-415 (514)
180 KOG4227 WD40 repeat protein [G 99.8 1.8E-19 3.9E-24 134.9 15.4 206 29-243 48-263 (609)
181 KOG0650 WD40 repeat nucleolar 99.8 1.2E-19 2.6E-24 142.1 14.4 201 43-251 522-732 (733)
182 KOG1517 Guanine nucleotide bin 99.8 3.7E-18 8.1E-23 141.7 23.5 232 7-253 1078-1332(1387)
183 KOG1517 Guanine nucleotide bin 99.8 1.5E-18 3.3E-23 144.0 21.0 244 3-252 1121-1379(1387)
184 KOG1445 Tumor-specific antigen 99.8 1.3E-19 2.9E-24 143.1 13.6 200 1-208 636-847 (1012)
185 KOG0644 Uncharacterized conser 99.8 3.9E-20 8.6E-25 149.8 10.9 225 3-251 200-465 (1113)
186 COG2319 FOG: WD40 repeat [Gene 99.8 5.3E-17 1.1E-21 130.4 28.5 219 14-253 135-358 (466)
187 KOG1523 Actin-related protein 99.8 2.3E-18 4.9E-23 125.6 17.6 206 43-252 11-234 (361)
188 KOG1009 Chromatin assembly com 99.8 3.1E-19 6.7E-24 133.7 13.0 195 43-241 14-247 (434)
189 KOG1272 WD40-repeat-containing 99.8 5.6E-20 1.2E-24 139.9 9.1 219 3-252 139-360 (545)
190 COG2319 FOG: WD40 repeat [Gene 99.8 9.1E-17 2E-21 129.0 28.5 227 4-253 76-313 (466)
191 KOG2110 Uncharacterized conser 99.8 2.3E-16 5E-21 117.2 26.6 175 14-208 69-251 (391)
192 KOG1963 WD40 repeat protein [G 99.8 2.3E-17 4.9E-22 134.5 22.5 230 3-253 27-321 (792)
193 KOG0649 WD40 repeat protein [G 99.8 5.5E-17 1.2E-21 114.4 20.3 228 6-252 73-314 (325)
194 KOG1524 WD40 repeat-containing 99.8 4.9E-18 1.1E-22 131.8 15.5 206 4-250 75-282 (737)
195 PRK11028 6-phosphogluconolacto 99.8 3.8E-16 8.3E-21 122.2 26.3 229 11-253 9-257 (330)
196 PRK11028 6-phosphogluconolacto 99.8 4.4E-16 9.5E-21 121.9 26.4 231 4-253 45-303 (330)
197 KOG1523 Actin-related protein 99.8 9.3E-17 2E-21 117.3 19.5 226 3-245 20-269 (361)
198 KOG0771 Prolactin regulatory e 99.8 6.7E-18 1.4E-22 127.2 13.9 191 3-207 154-356 (398)
199 PRK01742 tolB translocation pr 99.8 8.7E-17 1.9E-21 129.7 21.5 205 14-252 185-399 (429)
200 KOG3881 Uncharacterized conser 99.8 5.3E-17 1.2E-21 121.4 18.3 194 4-208 115-323 (412)
201 KOG2394 WD40 protein DMR-N9 [G 99.8 3.5E-17 7.6E-22 127.0 16.3 212 5-234 135-384 (636)
202 KOG0644 Uncharacterized conser 99.8 6.8E-19 1.5E-23 142.8 6.7 203 27-253 180-425 (1113)
203 KOG1963 WD40 repeat protein [G 99.8 5.4E-16 1.2E-20 126.6 23.3 240 3-252 215-536 (792)
204 KOG3881 Uncharacterized conser 99.8 2.6E-16 5.7E-21 117.7 19.5 198 43-253 106-319 (412)
205 KOG1240 Protein kinase contain 99.8 1.7E-16 3.8E-21 133.7 20.4 212 28-253 1039-1272(1431)
206 KOG2111 Uncharacterized conser 99.8 1.5E-15 3.2E-20 111.0 22.6 229 3-253 15-255 (346)
207 KOG2139 WD40 repeat protein [G 99.8 2.8E-16 6E-21 116.7 17.7 185 43-241 99-297 (445)
208 KOG2321 WD40 repeat protein [G 99.7 3.3E-16 7.1E-21 122.6 19.0 193 46-250 137-339 (703)
209 KOG2139 WD40 repeat protein [G 99.7 1.5E-15 3.3E-20 112.8 21.2 212 12-242 118-363 (445)
210 KOG1538 Uncharacterized conser 99.7 7E-17 1.5E-21 128.7 14.0 189 44-251 14-208 (1081)
211 KOG0322 G-protein beta subunit 99.7 2.5E-17 5.4E-22 117.3 9.9 158 43-204 151-322 (323)
212 KOG1524 WD40 repeat-containing 99.7 2.4E-16 5.1E-21 122.6 15.8 175 55-249 75-250 (737)
213 KOG2394 WD40 protein DMR-N9 [G 99.7 1.5E-16 3.2E-21 123.6 14.4 159 43-207 220-454 (636)
214 KOG2111 Uncharacterized conser 99.7 3E-14 6.5E-19 104.3 25.1 217 14-248 76-316 (346)
215 KOG0642 Cell-cycle nuclear pro 99.7 7.9E-17 1.7E-21 125.6 12.4 215 30-252 287-517 (577)
216 KOG1272 WD40-repeat-containing 99.7 2.9E-17 6.3E-22 125.4 9.2 218 4-246 181-400 (545)
217 KOG1310 WD40 repeat protein [G 99.7 5.4E-17 1.2E-21 126.5 10.4 173 77-252 42-229 (758)
218 KOG0280 Uncharacterized conser 99.7 2.4E-15 5.1E-20 108.9 17.7 228 14-251 96-330 (339)
219 KOG1240 Protein kinase contain 99.7 5.8E-15 1.3E-19 124.7 22.1 243 1-253 1057-1333(1431)
220 PRK02889 tolB translocation pr 99.7 1.5E-14 3.3E-19 116.7 23.4 206 14-246 177-392 (427)
221 KOG1334 WD40 repeat protein [G 99.7 2.8E-16 6.2E-21 120.7 12.3 219 27-252 132-364 (559)
222 PF08662 eIF2A: Eukaryotic tra 99.7 5.6E-15 1.2E-19 106.0 18.3 147 90-253 10-178 (194)
223 PRK03629 tolB translocation pr 99.7 2.7E-14 5.8E-19 115.2 24.2 205 14-247 180-396 (429)
224 PRK04922 tolB translocation pr 99.7 2.2E-14 4.8E-19 116.1 23.7 202 14-244 185-398 (433)
225 PRK05137 tolB translocation pr 99.7 4.1E-14 8.8E-19 114.6 24.7 202 14-244 183-396 (435)
226 KOG1334 WD40 repeat protein [G 99.7 2.5E-16 5.4E-21 121.0 11.0 232 3-252 152-464 (559)
227 PRK01742 tolB translocation pr 99.7 9.1E-15 2E-19 118.1 20.0 203 4-235 214-426 (429)
228 KOG0280 Uncharacterized conser 99.6 1E-13 2.2E-18 100.6 18.3 224 14-252 47-282 (339)
229 KOG1354 Serine/threonine prote 99.6 1.6E-13 3.6E-18 101.6 18.6 240 3-252 35-357 (433)
230 PF08662 eIF2A: Eukaryotic tra 99.6 2E-13 4.3E-18 98.0 18.4 149 46-206 9-180 (194)
231 KOG0974 WD-repeat protein WDR6 99.6 3.3E-14 7.1E-19 118.3 16.1 190 4-208 99-291 (967)
232 KOG2321 WD40 repeat protein [G 99.6 6.7E-14 1.5E-18 109.9 16.7 190 3-208 144-346 (703)
233 TIGR02800 propeller_TolB tol-p 99.6 8.2E-13 1.8E-17 106.8 23.7 204 14-246 171-386 (417)
234 KOG4497 Uncharacterized conser 99.6 7.3E-15 1.6E-19 108.1 10.4 215 3-252 18-238 (447)
235 KOG0309 Conserved WD40 repeat- 99.6 9.2E-15 2E-19 118.0 11.5 237 5-253 36-338 (1081)
236 PRK03629 tolB translocation pr 99.6 1.3E-12 2.7E-17 105.6 22.0 204 3-235 208-428 (429)
237 KOG4547 WD40 repeat-containing 99.6 5.1E-12 1.1E-16 99.7 23.5 193 1-207 1-222 (541)
238 KOG1409 Uncharacterized conser 99.6 1.7E-12 3.7E-17 96.2 19.0 227 4-253 36-269 (404)
239 KOG1354 Serine/threonine prote 99.6 2.2E-13 4.7E-18 101.0 13.8 204 42-252 164-432 (433)
240 PF10282 Lactonase: Lactonase, 99.6 1.2E-10 2.7E-15 91.5 30.1 241 2-253 46-321 (345)
241 KOG4547 WD40 repeat-containing 99.5 1.1E-12 2.3E-17 103.4 17.9 187 52-252 2-218 (541)
242 PRK00178 tolB translocation pr 99.5 1.9E-11 4E-16 99.3 24.2 202 14-244 180-393 (430)
243 KOG4497 Uncharacterized conser 99.5 9.7E-12 2.1E-16 91.9 19.8 220 7-252 63-389 (447)
244 PF02239 Cytochrom_D1: Cytochr 99.5 1.8E-11 3.9E-16 96.4 22.5 185 56-252 6-200 (369)
245 KOG0974 WD-repeat protein WDR6 99.5 1.9E-12 4.1E-17 108.1 17.3 183 55-253 99-287 (967)
246 PRK04922 tolB translocation pr 99.5 1.2E-11 2.7E-16 100.2 21.8 202 4-234 214-432 (433)
247 PRK02889 tolB translocation pr 99.5 6.2E-12 1.3E-16 101.6 19.8 175 65-253 176-359 (427)
248 PRK01029 tolB translocation pr 99.5 9.8E-11 2.1E-15 94.4 25.0 196 43-252 185-401 (428)
249 PF02239 Cytochrom_D1: Cytochr 99.5 5.9E-11 1.3E-15 93.5 23.1 182 14-208 17-205 (369)
250 PRK04792 tolB translocation pr 99.5 5.3E-11 1.1E-15 96.7 23.3 183 43-244 218-412 (448)
251 KOG1064 RAVE (regulator of V-A 99.5 4.3E-13 9.3E-18 117.6 11.5 185 43-253 2209-2397(2439)
252 KOG1064 RAVE (regulator of V-A 99.4 1.1E-12 2.5E-17 115.0 12.2 181 2-209 2218-2402(2439)
253 KOG2315 Predicted translation 99.4 5.8E-11 1.2E-15 93.4 20.3 110 128-252 269-388 (566)
254 PRK05137 tolB translocation pr 99.4 8E-11 1.7E-15 95.6 21.6 171 65-252 182-364 (435)
255 KOG1409 Uncharacterized conser 99.4 4E-11 8.7E-16 89.1 16.7 191 6-208 81-273 (404)
256 PLN02919 haloacid dehalogenase 99.4 9.2E-10 2E-14 97.5 27.7 243 2-253 577-887 (1057)
257 PF10282 Lactonase: Lactonase, 99.4 2.1E-09 4.5E-14 84.7 27.0 232 14-253 14-274 (345)
258 KOG4714 Nucleoporin [Nuclear s 99.4 1.1E-11 2.5E-16 88.7 12.6 150 53-206 99-255 (319)
259 COG5170 CDC55 Serine/threonine 99.4 2.7E-11 5.9E-16 89.1 14.8 238 4-251 37-364 (460)
260 PRK01029 tolB translocation pr 99.4 6E-10 1.3E-14 89.9 23.0 197 14-236 212-426 (428)
261 KOG4532 WD40-like repeat conta 99.4 4.1E-10 8.9E-15 81.3 19.4 223 6-241 85-319 (344)
262 PF15492 Nbas_N: Neuroblastoma 99.4 6.1E-09 1.3E-13 76.1 25.0 225 3-253 7-258 (282)
263 PRK00178 tolB translocation pr 99.4 6.4E-10 1.4E-14 90.4 22.1 203 4-235 209-428 (430)
264 COG2706 3-carboxymuconate cycl 99.3 1.4E-08 3E-13 76.5 26.3 228 14-252 65-319 (346)
265 COG2706 3-carboxymuconate cycl 99.3 8.1E-09 1.8E-13 77.7 24.8 228 14-252 17-272 (346)
266 TIGR02800 propeller_TolB tol-p 99.3 6.6E-10 1.4E-14 90.0 20.6 171 65-252 170-352 (417)
267 KOG1275 PAB-dependent poly(A) 99.3 1.5E-10 3.4E-15 96.1 15.7 180 5-203 147-340 (1118)
268 KOG4190 Uncharacterized conser 99.3 6.4E-12 1.4E-16 99.1 7.0 168 30-209 728-910 (1034)
269 KOG4532 WD40-like repeat conta 99.3 2.6E-09 5.6E-14 77.2 19.5 177 53-237 82-263 (344)
270 COG5170 CDC55 Serine/threonine 99.3 9.3E-11 2E-15 86.3 12.2 206 43-253 27-308 (460)
271 PRK04792 tolB translocation pr 99.3 2.4E-09 5.2E-14 87.1 21.6 204 4-235 228-447 (448)
272 COG4946 Uncharacterized protei 99.3 7.1E-09 1.5E-13 80.7 22.4 146 1-163 328-479 (668)
273 KOG3914 WD repeat protein WDR4 99.3 2.2E-10 4.8E-15 86.8 13.7 155 46-211 66-229 (390)
274 TIGR02658 TTQ_MADH_Hv methylam 99.3 5.2E-08 1.1E-12 75.7 26.1 231 1-253 54-329 (352)
275 KOG0309 Conserved WD40 repeat- 99.3 4.1E-11 8.8E-16 97.4 9.4 199 43-252 25-230 (1081)
276 KOG3914 WD repeat protein WDR4 99.2 3.8E-10 8.2E-15 85.5 13.7 154 88-253 65-222 (390)
277 COG4946 Uncharacterized protei 99.2 1.1E-08 2.4E-13 79.7 21.6 217 3-240 276-504 (668)
278 KOG1912 WD40 repeat protein [G 99.2 3.6E-09 7.9E-14 86.8 19.9 227 5-252 26-302 (1062)
279 KOG2041 WD40 repeat protein [G 99.2 4.1E-10 9E-15 91.6 14.0 221 4-245 25-279 (1189)
280 KOG4714 Nucleoporin [Nuclear s 99.2 2.8E-10 6.1E-15 81.7 9.6 195 45-252 39-252 (319)
281 KOG4190 Uncharacterized conser 99.2 6.1E-10 1.3E-14 88.2 11.4 192 4-208 746-951 (1034)
282 KOG1275 PAB-dependent poly(A) 99.1 3E-09 6.6E-14 88.6 15.4 186 55-252 147-340 (1118)
283 KOG1645 RING-finger-containing 99.1 1.7E-08 3.6E-13 77.0 17.4 84 28-117 184-269 (463)
284 KOG2314 Translation initiation 99.1 3.4E-08 7.5E-13 78.3 19.6 225 3-252 220-523 (698)
285 PLN02919 haloacid dehalogenase 99.1 9.4E-08 2E-12 85.1 24.2 159 45-209 685-892 (1057)
286 KOG2066 Vacuolar assembly/sort 99.1 6E-09 1.3E-13 85.8 15.1 186 43-252 40-231 (846)
287 KOG2041 WD40 repeat protein [G 99.1 1.7E-09 3.7E-14 88.1 11.6 158 43-207 15-188 (1189)
288 PF08450 SGL: SMP-30/Gluconola 99.1 1.5E-06 3.3E-11 65.2 28.1 211 2-241 9-242 (246)
289 PF08450 SGL: SMP-30/Gluconola 99.1 3.8E-07 8.3E-12 68.5 22.8 194 47-252 4-211 (246)
290 PF04762 IKI3: IKI3 family; I 99.1 1.4E-07 3E-12 82.7 22.9 198 43-252 121-377 (928)
291 KOG2695 WD40 repeat protein [G 99.0 8.6E-10 1.9E-14 82.3 7.7 165 59-234 228-402 (425)
292 PF07433 DUF1513: Protein of u 99.0 1.6E-06 3.6E-11 65.3 24.7 218 1-236 13-269 (305)
293 PRK04043 tolB translocation pr 99.0 9.8E-07 2.1E-11 71.1 25.3 179 44-243 189-386 (419)
294 KOG2695 WD40 repeat protein [G 99.0 2.2E-09 4.8E-14 80.2 8.7 160 8-183 228-401 (425)
295 COG5354 Uncharacterized protei 99.0 2E-07 4.4E-12 73.3 18.5 223 3-252 42-304 (561)
296 KOG0882 Cyclophilin-related pe 99.0 2.4E-08 5.3E-13 77.2 12.5 203 43-252 10-229 (558)
297 PF00400 WD40: WD domain, G-be 99.0 2.5E-09 5.5E-14 55.6 5.2 37 166-203 3-39 (39)
298 KOG2314 Translation initiation 98.9 3.7E-07 7.9E-12 72.7 19.0 219 4-246 316-559 (698)
299 KOG2315 Predicted translation 98.9 3.9E-07 8.4E-12 72.5 18.9 149 47-207 222-392 (566)
300 PRK04043 tolB translocation pr 98.9 1.4E-06 3.1E-11 70.2 22.7 171 14-206 214-401 (419)
301 KOG1008 Uncharacterized conser 98.9 9.8E-10 2.1E-14 88.3 4.3 217 7-236 72-315 (783)
302 PF00400 WD40: WD domain, G-be 98.9 6.8E-09 1.5E-13 53.9 6.1 38 28-71 2-39 (39)
303 KOG1832 HIV-1 Vpr-binding prot 98.9 1.6E-09 3.4E-14 90.3 4.8 161 27-208 1091-1258(1516)
304 TIGR03300 assembly_YfgL outer 98.9 1.3E-06 2.9E-11 69.9 21.1 218 5-252 146-377 (377)
305 PF04762 IKI3: IKI3 family; I 98.9 6.5E-07 1.4E-11 78.6 19.6 204 44-252 211-454 (928)
306 KOG2066 Vacuolar assembly/sort 98.8 1E-06 2.2E-11 73.1 19.0 173 5-207 49-235 (846)
307 KOG2114 Vacuolar assembly/sort 98.8 8.6E-07 1.9E-11 74.1 18.3 195 44-252 27-241 (933)
308 KOG1008 Uncharacterized conser 98.8 2.3E-09 5E-14 86.2 2.8 198 43-252 57-273 (783)
309 KOG2114 Vacuolar assembly/sort 98.8 4.4E-06 9.5E-11 70.0 21.5 188 7-208 37-246 (933)
310 TIGR03300 assembly_YfgL outer 98.8 8.2E-06 1.8E-10 65.3 22.8 219 5-252 106-336 (377)
311 PF13360 PQQ_2: PQQ-like domai 98.8 7.2E-06 1.6E-10 61.2 21.2 215 14-253 4-229 (238)
312 PF11768 DUF3312: Protein of u 98.8 5.3E-06 1.2E-10 66.9 21.0 112 45-164 208-332 (545)
313 PF11768 DUF3312: Protein of u 98.8 1.7E-06 3.8E-11 69.6 17.2 145 86-236 206-369 (545)
314 KOG0882 Cyclophilin-related pe 98.8 9.6E-08 2.1E-12 74.0 9.7 195 3-209 18-235 (558)
315 KOG1912 WD40 repeat protein [G 98.7 6E-07 1.3E-11 74.3 14.6 195 1-207 74-306 (1062)
316 KOG1645 RING-finger-containing 98.7 4.2E-07 9.1E-12 69.6 10.8 163 67-241 175-347 (463)
317 PF13360 PQQ_2: PQQ-like domai 98.6 2.2E-05 4.9E-10 58.5 19.8 184 4-208 36-233 (238)
318 PF06977 SdiA-regulated: SdiA- 98.6 8.8E-05 1.9E-09 55.2 23.7 200 43-252 22-248 (248)
319 COG5354 Uncharacterized protei 98.6 3.4E-05 7.3E-10 61.2 19.8 205 14-245 109-336 (561)
320 TIGR02658 TTQ_MADH_Hv methylam 98.6 3.9E-05 8.5E-10 59.9 20.3 103 65-171 27-145 (352)
321 PF15492 Nbas_N: Neuroblastoma 98.6 8.9E-05 1.9E-09 54.8 20.3 188 3-209 53-263 (282)
322 PF03178 CPSF_A: CPSF A subuni 98.6 0.00014 3.1E-09 56.9 23.0 188 55-250 42-261 (321)
323 PRK11138 outer membrane biogen 98.5 0.00011 2.3E-09 59.3 21.5 216 5-253 161-393 (394)
324 PF07433 DUF1513: Protein of u 98.5 0.00029 6.3E-09 53.5 22.0 201 44-252 6-245 (305)
325 KOG1920 IkappaB kinase complex 98.4 0.00015 3.2E-09 63.5 21.0 158 43-208 110-325 (1265)
326 KOG1920 IkappaB kinase complex 98.4 0.00015 3.3E-09 63.4 19.6 199 43-252 69-320 (1265)
327 KOG3621 WD40 repeat-containing 98.4 1.6E-05 3.5E-10 65.4 13.1 157 44-207 35-199 (726)
328 PF04841 Vps16_N: Vps16, N-ter 98.3 0.00056 1.2E-08 55.3 21.5 194 15-236 63-271 (410)
329 PRK11138 outer membrane biogen 98.3 0.00064 1.4E-08 54.9 21.4 184 5-209 121-316 (394)
330 PF08596 Lgl_C: Lethal giant l 98.3 0.00021 4.5E-09 57.2 17.3 198 43-250 87-331 (395)
331 PF08596 Lgl_C: Lethal giant l 98.3 0.00048 1E-08 55.1 19.1 200 44-253 3-289 (395)
332 PRK02888 nitrous-oxide reducta 98.2 0.00046 9.9E-09 57.4 17.7 181 2-206 201-405 (635)
333 KOG3617 WD40 and TPR repeat-co 98.2 0.00023 4.9E-09 60.4 16.0 70 44-114 61-131 (1416)
334 KOG3621 WD40 repeat-containing 98.1 2.5E-05 5.5E-10 64.3 10.0 119 131-253 35-153 (726)
335 PF08553 VID27: VID27 cytoplas 98.1 0.00016 3.4E-09 62.1 15.1 146 54-205 492-647 (794)
336 KOG4640 Anaphase-promoting com 98.1 2E-05 4.3E-10 64.1 8.5 93 131-234 22-115 (665)
337 KOG1832 HIV-1 Vpr-binding prot 98.1 6.4E-06 1.4E-10 69.6 5.8 152 77-240 1093-1246(1516)
338 PF03178 CPSF_A: CPSF A subuni 98.1 0.00086 1.9E-08 52.5 17.4 174 65-252 2-200 (321)
339 KOG4640 Anaphase-promoting com 98.1 3.4E-05 7.3E-10 62.8 9.1 93 43-139 21-115 (665)
340 PF04053 Coatomer_WDAD: Coatom 98.1 0.0028 6.1E-08 51.6 20.0 209 3-253 42-261 (443)
341 COG0823 TolB Periplasmic compo 98.0 0.001 2.2E-08 53.8 17.3 156 43-208 193-361 (425)
342 PF08553 VID27: VID27 cytoplas 98.0 0.0003 6.6E-09 60.4 14.8 139 95-245 492-639 (794)
343 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.0009 1.9E-08 42.7 13.4 100 45-153 2-107 (111)
344 PRK02888 nitrous-oxide reducta 98.0 0.0042 9.1E-08 51.9 19.6 109 141-253 287-403 (635)
345 PF04841 Vps16_N: Vps16, N-ter 97.9 0.0071 1.5E-07 49.0 21.3 167 66-251 62-243 (410)
346 PF06977 SdiA-regulated: SdiA- 97.9 0.0052 1.1E-07 45.9 19.1 186 2-202 31-247 (248)
347 smart00320 WD40 WD40 repeats. 97.9 5.5E-05 1.2E-09 38.0 5.0 38 28-71 3-40 (40)
348 smart00320 WD40 WD40 repeats. 97.9 6.3E-05 1.4E-09 37.8 5.1 37 76-112 3-40 (40)
349 PF05694 SBP56: 56kDa selenium 97.8 0.0074 1.6E-07 48.1 17.8 233 4-242 86-391 (461)
350 PF00930 DPPIV_N: Dipeptidyl p 97.8 0.01 2.2E-07 47.2 23.0 208 14-240 24-296 (353)
351 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.0067 1.5E-07 44.8 20.8 63 55-118 63-127 (354)
352 KOG2444 WD40 repeat protein [G 97.8 4.6E-05 9.9E-10 54.6 4.6 141 98-253 32-176 (238)
353 COG3204 Uncharacterized protei 97.8 0.0093 2E-07 44.9 20.1 201 43-247 86-305 (316)
354 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0036 7.7E-08 40.0 13.2 101 132-249 2-109 (111)
355 KOG2079 Vacuolar assembly/sort 97.7 0.00073 1.6E-08 58.8 11.3 96 7-113 101-202 (1206)
356 COG0823 TolB Periplasmic compo 97.6 0.0045 9.7E-08 50.2 14.4 164 66-243 174-344 (425)
357 COG3391 Uncharacterized conser 97.6 0.024 5.3E-07 45.6 21.5 191 46-250 77-279 (381)
358 PF04053 Coatomer_WDAD: Coatom 97.6 0.01 2.2E-07 48.4 16.1 139 84-252 31-171 (443)
359 KOG3617 WD40 and TPR repeat-co 97.6 0.0003 6.5E-09 59.7 7.5 110 132-253 18-130 (1416)
360 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.016 3.6E-07 42.8 17.7 144 53-204 21-164 (354)
361 PHA02713 hypothetical protein; 97.5 0.01 2.3E-07 50.1 15.5 148 54-209 351-537 (557)
362 COG3386 Gluconolactonase [Carb 97.5 0.031 6.8E-07 43.3 19.0 196 49-252 31-241 (307)
363 PRK13616 lipoprotein LpqB; Pro 97.4 0.034 7.3E-07 47.3 17.8 172 64-252 328-523 (591)
364 COG3391 Uncharacterized conser 97.4 0.043 9.4E-07 44.2 21.7 191 3-208 84-286 (381)
365 PF00930 DPPIV_N: Dipeptidyl p 97.4 0.044 9.5E-07 43.7 22.6 150 85-242 183-345 (353)
366 PF15390 DUF4613: Domain of un 97.4 0.056 1.2E-06 44.8 18.9 180 43-236 20-214 (671)
367 KOG2395 Protein involved in va 97.4 0.0057 1.2E-07 49.6 12.0 134 98-245 348-492 (644)
368 KOG2395 Protein involved in va 97.4 0.0057 1.2E-07 49.6 11.8 146 54-206 344-501 (644)
369 KOG2079 Vacuolar assembly/sort 97.3 0.0013 2.9E-08 57.3 8.6 99 54-153 98-198 (1206)
370 COG5276 Uncharacterized conser 97.3 0.05 1.1E-06 41.2 23.5 156 43-210 87-246 (370)
371 cd00216 PQQ_DH Dehydrogenases 97.2 0.096 2.1E-06 43.7 19.5 197 4-209 61-323 (488)
372 PF06433 Me-amine-dh_H: Methyl 97.2 0.066 1.4E-06 41.7 20.5 152 54-209 146-324 (342)
373 KOG1897 Damage-specific DNA bi 97.2 0.15 3.3E-06 44.8 21.7 228 2-251 681-939 (1096)
374 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0024 5.2E-08 34.1 5.3 30 43-73 12-41 (47)
375 PF14870 PSII_BNR: Photosynthe 97.1 0.043 9.4E-07 42.4 13.8 152 43-202 145-301 (302)
376 PF15390 DUF4613: Domain of un 97.1 0.043 9.3E-07 45.4 14.0 148 86-252 20-184 (671)
377 PF02897 Peptidase_S9_N: Proly 97.1 0.13 2.7E-06 42.0 24.8 160 44-208 125-312 (414)
378 PF12234 Rav1p_C: RAVE protein 97.0 0.029 6.2E-07 47.5 13.1 107 143-252 41-154 (631)
379 KOG4441 Proteins containing BT 97.0 0.17 3.7E-06 43.1 18.0 177 14-208 302-502 (571)
380 PF12894 Apc4_WD40: Anaphase-p 97.0 0.0033 7.3E-08 33.5 5.1 30 174-204 11-40 (47)
381 COG3823 Glutamine cyclotransfe 97.0 0.079 1.7E-06 38.1 13.7 178 4-194 55-248 (262)
382 PF08728 CRT10: CRT10; InterP 96.9 0.11 2.3E-06 44.7 15.6 147 55-205 49-246 (717)
383 PF14583 Pectate_lyase22: Olig 96.9 0.14 3.1E-06 40.6 20.4 205 14-242 61-299 (386)
384 KOG2444 WD40 repeat protein [G 96.9 0.0035 7.6E-08 45.2 5.8 65 53-117 112-180 (238)
385 PF00780 CNH: CNH domain; Int 96.9 0.13 2.8E-06 39.3 16.2 143 95-252 6-163 (275)
386 PHA03098 kelch-like protein; P 96.8 0.22 4.7E-06 42.2 17.2 147 54-208 342-514 (534)
387 PF00780 CNH: CNH domain; Int 96.8 0.15 3.2E-06 39.0 22.9 143 4-164 6-168 (275)
388 COG3490 Uncharacterized protei 96.8 0.15 3.1E-06 38.6 18.1 197 2-209 77-314 (366)
389 PHA02713 hypothetical protein; 96.7 0.059 1.3E-06 45.7 13.0 93 66-164 433-536 (557)
390 PF05096 Glu_cyclase_2: Glutam 96.7 0.16 3.4E-06 38.2 20.2 175 4-194 55-250 (264)
391 PF14761 HPS3_N: Hermansky-Pud 96.7 0.13 2.8E-06 37.2 14.8 149 97-253 29-213 (215)
392 PF06433 Me-amine-dh_H: Methyl 96.7 0.19 4.2E-06 39.2 15.8 137 65-209 17-169 (342)
393 PF10313 DUF2415: Uncharacteri 96.7 0.011 2.4E-07 30.6 5.3 32 130-162 1-34 (43)
394 cd00216 PQQ_DH Dehydrogenases 96.7 0.29 6.3E-06 40.9 22.3 152 5-165 111-323 (488)
395 KOG3630 Nuclear pore complex, 96.7 0.07 1.5E-06 47.6 13.1 147 87-240 102-259 (1405)
396 PF10168 Nup88: Nuclear pore c 96.5 0.27 5.9E-06 42.9 15.6 79 130-211 85-185 (717)
397 KOG2280 Vacuolar assembly/sort 96.5 0.43 9.3E-06 41.0 16.0 179 14-210 65-251 (829)
398 PF12234 Rav1p_C: RAVE protein 96.4 0.22 4.8E-06 42.4 14.2 112 45-161 32-156 (631)
399 KOG2377 Uncharacterized conser 96.4 0.12 2.6E-06 41.6 11.6 141 89-240 26-169 (657)
400 COG3490 Uncharacterized protei 96.4 0.29 6.3E-06 37.1 13.3 103 131-240 69-177 (366)
401 PF10647 Gmad1: Lipoprotein Lp 96.4 0.29 6.3E-06 37.0 17.8 150 87-242 25-183 (253)
402 PF10313 DUF2415: Uncharacteri 96.2 0.032 6.9E-07 28.9 5.3 32 43-74 1-34 (43)
403 PRK13616 lipoprotein LpqB; Pro 96.2 0.71 1.5E-05 39.6 22.1 184 43-247 350-561 (591)
404 KOG2377 Uncharacterized conser 96.1 0.3 6.5E-06 39.5 12.6 155 46-206 26-186 (657)
405 KOG4441 Proteins containing BT 96.1 0.46 1E-05 40.5 14.6 148 53-208 283-455 (571)
406 PHA03098 kelch-like protein; P 96.0 0.71 1.5E-05 39.2 15.5 147 54-208 294-467 (534)
407 PF05096 Glu_cyclase_2: Glutam 95.9 0.49 1.1E-05 35.7 16.2 188 45-244 47-250 (264)
408 COG3386 Gluconolactonase [Carb 95.8 0.64 1.4E-05 36.2 19.0 182 4-195 76-276 (307)
409 PF10168 Nup88: Nuclear pore c 95.8 0.64 1.4E-05 40.7 14.4 71 43-115 85-180 (717)
410 KOG1916 Nuclear protein, conta 95.8 0.0039 8.5E-08 53.7 1.2 98 14-114 154-265 (1283)
411 PF14583 Pectate_lyase22: Olig 95.8 0.79 1.7E-05 36.6 17.8 153 49-207 42-224 (386)
412 KOG3630 Nuclear pore complex, 95.7 0.12 2.6E-06 46.2 9.5 114 131-252 102-226 (1405)
413 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.6 1.2 2.6E-05 37.7 20.9 196 4-209 69-337 (527)
414 PF14870 PSII_BNR: Photosynthe 95.6 0.82 1.8E-05 35.5 22.3 155 83-251 142-301 (302)
415 PF05694 SBP56: 56kDa selenium 95.4 0.87 1.9E-05 36.9 12.6 173 14-194 158-393 (461)
416 PF14655 RAB3GAP2_N: Rab3 GTPa 95.3 0.5 1.1E-05 38.3 11.2 75 43-118 308-402 (415)
417 KOG4499 Ca2+-binding protein R 95.3 0.84 1.8E-05 33.7 12.4 100 46-149 161-273 (310)
418 PF12768 Rax2: Cortical protei 95.2 1.1 2.3E-05 34.5 12.8 99 65-163 16-125 (281)
419 KOG4460 Nuclear pore complex, 95.2 0.91 2E-05 37.6 12.1 77 131-210 105-203 (741)
420 COG5276 Uncharacterized conser 95.1 1.1 2.4E-05 34.2 23.9 136 14-165 107-245 (370)
421 KOG2247 WD40 repeat-containing 95.0 0.0028 6.1E-08 50.8 -1.9 140 47-197 39-180 (615)
422 TIGR02604 Piru_Ver_Nterm putat 94.9 1.6 3.4E-05 35.2 16.1 143 44-194 15-202 (367)
423 COG3204 Uncharacterized protei 94.8 1.4 3E-05 33.7 17.9 152 1-162 94-264 (316)
424 PHA02790 Kelch-like protein; P 94.8 2.1 4.6E-05 35.8 17.7 143 54-208 318-473 (480)
425 KOG1900 Nuclear pore complex, 94.7 1.4 3E-05 40.5 13.1 142 62-207 96-274 (1311)
426 KOG4499 Ca2+-binding protein R 94.6 1.3 2.9E-05 32.7 14.6 137 43-185 109-264 (310)
427 PF10214 Rrn6: RNA polymerase 94.6 3.2 6.9E-05 37.1 24.1 146 83-236 77-258 (765)
428 PHA02790 Kelch-like protein; P 94.6 2.4 5.2E-05 35.5 14.4 141 4-162 318-471 (480)
429 PRK13684 Ycf48-like protein; P 94.5 1.9 4.2E-05 34.1 15.8 151 43-204 173-330 (334)
430 PF14655 RAB3GAP2_N: Rab3 GTPa 94.4 2.3 5E-05 34.7 21.5 91 3-94 11-117 (415)
431 PF14761 HPS3_N: Hermansky-Pud 94.3 1.4 3.1E-05 32.0 10.5 140 56-204 29-213 (215)
432 COG5167 VID27 Protein involved 94.3 0.64 1.4E-05 38.3 9.4 145 53-206 477-633 (776)
433 TIGR03074 PQQ_membr_DH membran 94.2 3.8 8.1E-05 36.5 22.2 151 55-209 260-481 (764)
434 PF07569 Hira: TUP1-like enhan 94.2 0.44 9.6E-06 35.1 7.9 69 182-252 18-93 (219)
435 COG5167 VID27 Protein involved 93.6 2.9 6.3E-05 34.7 11.8 136 95-245 478-624 (776)
436 PF07569 Hira: TUP1-like enhan 93.6 0.85 1.9E-05 33.6 8.4 65 141-208 21-98 (219)
437 PF08801 Nucleoporin_N: Nup133 93.4 3.7 8.1E-05 33.7 13.6 31 175-206 190-220 (422)
438 PF08728 CRT10: CRT10; InterP 93.3 5.2 0.00011 35.0 17.5 116 131-253 102-245 (717)
439 KOG2280 Vacuolar assembly/sort 93.2 5.3 0.00012 34.8 16.4 52 65-117 64-115 (829)
440 PF14727 PHTB1_N: PTHB1 N-term 92.9 4.5 9.7E-05 33.1 20.7 148 53-206 35-205 (418)
441 KOG4460 Nuclear pore complex, 92.5 3.9 8.5E-05 34.1 11.2 26 44-70 105-130 (741)
442 PF12768 Rax2: Cortical protei 92.5 4 8.6E-05 31.4 12.3 112 14-139 17-146 (281)
443 TIGR03075 PQQ_enz_alc_DH PQQ-d 92.3 6.4 0.00014 33.5 23.1 53 66-118 272-337 (527)
444 PF07676 PD40: WD40-like Beta 92.3 0.75 1.6E-05 23.1 4.9 30 173-202 7-38 (39)
445 KOG1900 Nuclear pore complex, 92.1 7.9 0.00017 36.0 13.4 143 6-163 92-274 (1311)
446 KOG2247 WD40 repeat-containing 92.0 0.023 5E-07 45.9 -1.6 139 90-246 39-180 (615)
447 PF11635 Med16: Mediator compl 91.9 8.8 0.00019 34.3 20.3 192 57-249 64-345 (753)
448 PLN00033 photosystem II stabil 91.9 6 0.00013 32.2 15.9 148 45-202 241-396 (398)
449 PRK10115 protease 2; Provision 91.5 9.5 0.00021 33.7 24.0 114 43-161 127-255 (686)
450 COG4590 ABC-type uncharacteriz 91.4 7.1 0.00015 32.1 11.4 151 90-253 225-385 (733)
451 COG4590 ABC-type uncharacteriz 91.3 2.6 5.7E-05 34.4 8.9 151 3-164 230-389 (733)
452 PF02333 Phytase: Phytase; In 90.8 7.5 0.00016 31.3 19.7 187 6-208 69-293 (381)
453 KOG1916 Nuclear protein, conta 90.7 0.14 3E-06 44.8 1.6 136 65-206 111-266 (1283)
454 PF11715 Nup160: Nucleoporin N 90.6 1.8 3.8E-05 36.9 8.2 67 141-209 157-252 (547)
455 PF12657 TFIIIC_delta: Transcr 90.6 4.3 9.2E-05 28.7 8.9 27 226-252 87-119 (173)
456 TIGR03548 mutarot_permut cycli 90.5 7.2 0.00016 30.7 19.4 108 54-164 72-197 (323)
457 PF02333 Phytase: Phytase; In 90.4 8.3 0.00018 31.1 22.0 197 47-252 58-288 (381)
458 PF14781 BBS2_N: Ciliary BBSom 90.2 4.1 8.8E-05 27.3 11.6 106 92-206 5-126 (136)
459 PF10647 Gmad1: Lipoprotein Lp 89.7 7.3 0.00016 29.5 21.6 152 44-201 25-192 (253)
460 TIGR03547 muta_rot_YjhT mutatr 89.6 9.1 0.0002 30.4 22.5 52 54-105 63-128 (346)
461 PF12657 TFIIIC_delta: Transcr 89.4 3.8 8.1E-05 29.0 7.8 31 176-206 87-122 (173)
462 PLN02193 nitrile-specifier pro 89.1 12 0.00027 31.3 17.2 150 54-208 228-413 (470)
463 PF07250 Glyoxal_oxid_N: Glyox 89.1 8 0.00017 29.1 11.1 137 67-208 48-200 (243)
464 TIGR02604 Piru_Ver_Nterm putat 88.6 11 0.00025 30.3 22.5 98 44-149 73-202 (367)
465 TIGR03606 non_repeat_PQQ dehyd 87.9 14 0.00031 30.7 12.5 54 131-186 31-90 (454)
466 TIGR02276 beta_rpt_yvtn 40-res 87.9 2.3 5E-05 21.5 5.2 30 54-83 2-32 (42)
467 KOG1897 Damage-specific DNA bi 87.6 22 0.00048 32.4 24.8 148 54-208 460-616 (1096)
468 smart00564 PQQ beta-propeller 87.1 1.9 4.1E-05 20.5 3.7 26 55-80 6-31 (33)
469 PF07995 GSDH: Glucose / Sorbo 87.0 14 0.00029 29.4 11.4 106 87-195 3-133 (331)
470 PF10214 Rrn6: RNA polymerase 86.7 23 0.00051 31.8 21.1 160 43-207 80-278 (765)
471 KOG1896 mRNA cleavage and poly 86.4 29 0.00062 32.5 12.7 112 43-160 1098-1212(1366)
472 TIGR03548 mutarot_permut cycli 86.2 15 0.00032 28.9 15.7 63 54-117 123-197 (323)
473 TIGR02276 beta_rpt_yvtn 40-res 85.8 3.2 6.9E-05 20.9 5.2 30 141-171 2-31 (42)
474 KOG1983 Tomosyn and related SN 85.5 25 0.00055 32.6 12.2 32 44-76 37-68 (993)
475 TIGR03118 PEPCTERM_chp_1 conse 85.4 16 0.00034 28.5 19.2 116 45-162 25-171 (336)
476 PF11715 Nup160: Nucleoporin N 85.1 2.6 5.5E-05 36.0 5.8 37 44-81 216-256 (547)
477 PLN02153 epithiospecifier prot 85.0 18 0.00038 28.8 19.1 64 54-117 85-170 (341)
478 PF14781 BBS2_N: Ciliary BBSom 84.8 9.6 0.00021 25.6 11.4 105 49-162 5-126 (136)
479 PF01011 PQQ: PQQ enzyme repea 84.7 3.4 7.4E-05 20.6 4.0 26 57-82 2-27 (38)
480 PF02897 Peptidase_S9_N: Proly 84.3 21 0.00046 29.2 23.2 174 14-205 151-357 (414)
481 COG4257 Vgb Streptogramin lyas 83.9 17 0.00038 27.9 15.3 156 45-208 64-221 (353)
482 PLN02153 epithiospecifier prot 83.8 20 0.00043 28.5 16.1 63 54-117 137-228 (341)
483 PF14727 PHTB1_N: PTHB1 N-term 83.5 24 0.00051 29.1 21.6 58 55-113 145-203 (418)
484 PF12341 DUF3639: Protein of u 83.3 3.3 7.1E-05 19.1 3.7 26 43-71 2-27 (27)
485 PF07995 GSDH: Glucose / Sorbo 82.2 23 0.0005 28.1 24.3 77 167-248 246-329 (331)
486 PF13449 Phytase-like: Esteras 81.4 25 0.00054 27.8 16.3 162 86-253 20-248 (326)
487 TIGR02171 Fb_sc_TIGR02171 Fibr 81.1 32 0.0007 31.2 10.6 84 106-193 329-417 (912)
488 KOG1898 Splicing factor 3b, su 81.0 47 0.001 30.7 15.8 179 14-206 854-1049(1205)
489 PLN02193 nitrile-specifier pro 80.5 33 0.00072 28.8 15.9 107 54-164 278-413 (470)
490 PRK14131 N-acetylneuraminic ac 80.4 29 0.00064 28.0 20.2 52 54-105 84-149 (376)
491 PF01731 Arylesterase: Arylest 80.0 11 0.00025 23.1 5.7 48 155-206 38-85 (86)
492 KOG1896 mRNA cleavage and poly 79.9 54 0.0012 30.8 13.3 144 56-206 1047-1214(1366)
493 PF14779 BBS1: Ciliary BBSome 79.1 20 0.00042 27.3 7.7 69 43-111 177-255 (257)
494 KOG1898 Splicing factor 3b, su 78.3 57 0.0012 30.2 13.8 110 43-160 936-1047(1205)
495 KOG3616 Selective LIM binding 78.2 7.5 0.00016 34.1 5.9 34 174-208 14-47 (1636)
496 KOG3522 Predicted guanine nucl 77.1 17 0.00036 32.4 7.6 139 96-251 547-694 (925)
497 TIGR03606 non_repeat_PQQ dehyd 77.1 42 0.00091 28.0 18.9 55 86-140 30-89 (454)
498 PF03022 MRJP: Major royal jel 76.0 35 0.00075 26.5 19.6 173 66-241 35-252 (287)
499 PF01436 NHL: NHL repeat; Int 75.5 6.6 0.00014 18.0 4.1 25 177-202 4-28 (28)
500 KOG0379 Kelch repeat-containin 75.4 49 0.0011 28.0 12.6 111 95-208 122-252 (482)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-44 Score=265.92 Aligned_cols=230 Identities=23% Similarity=0.367 Sum_probs=200.0
Q ss_pred CCCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee-
Q 035558 1 ECQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV- 77 (253)
Q Consensus 1 sp~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~- 77 (253)
+| ++..||+|+ | ++|+||+++. .+..+.++|. .-|.|++|+ |++..||+|+.||.|++||.+++++
T Consensus 124 sp-~g~~l~tGsGD~TvR~WD~~Te----Tp~~t~KgH~-----~WVlcvaws-PDgk~iASG~~dg~I~lwdpktg~~~ 192 (480)
T KOG0271|consen 124 SP-TGSRLVTGSGDTTVRLWDLDTE----TPLFTCKGHK-----NWVLCVAWS-PDGKKIASGSKDGSIRLWDPKTGQQI 192 (480)
T ss_pred cC-CCceEEecCCCceEEeeccCCC----CcceeecCCc-----cEEEEEEEC-CCcchhhccccCCeEEEecCCCCCcc
Confidence 35 788899988 4 9999999997 8899999999 899999999 9999999999999999999998874
Q ss_pred eeeeecccccEEEEEec------CCCeEEEEeCCCcEEEEEcCCCCCeee------------------------------
Q 035558 78 DTQLIAHDKEVYDIAWG------GVGVFASVSADGSVRVFDLRDKEHSTI------------------------------ 121 (253)
Q Consensus 78 ~~~~~~~~~~v~~~~~~------~~~~l~~~~~dg~i~i~d~~~~~~~~~------------------------------ 121 (253)
...+++|...|++++|. ..++|++++.||.++|||+..+.+...
T Consensus 193 g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkv 272 (480)
T KOG0271|consen 193 GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKV 272 (480)
T ss_pred cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEE
Confidence 56788999999999996 456888888888888888755331100
Q ss_pred --------------------------------------------------------------------------------
Q 035558 122 -------------------------------------------------------------------------------- 121 (253)
Q Consensus 122 -------------------------------------------------------------------------------- 121 (253)
T Consensus 273 w~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~ 352 (480)
T KOG0271|consen 273 WRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWN 352 (480)
T ss_pred EEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEec
Confidence
Q ss_pred -------eeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEec
Q 035558 122 -------IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAG 194 (253)
Q Consensus 122 -------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 194 (253)
+....+|..-|+.+.|+| +++++|+++.|.. |++||.++++. +..+++|-.+|+.++|+.|. ++|++||
T Consensus 353 p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkS-VkLW~g~tGk~-lasfRGHv~~VYqvawsaDs-RLlVS~S 428 (480)
T KOG0271|consen 353 PFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKS-VKLWDGRTGKF-LASFRGHVAAVYQVAWSADS-RLLVSGS 428 (480)
T ss_pred ccccccchhhhhchhhheeeEEECC-CccEEEEeecccc-eeeeeCCCcch-hhhhhhccceeEEEEeccCc-cEEEEcC
Confidence 001122455688999999 9999999999999 99999999875 89999999999999999998 7999999
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 195 DDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 195 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
.|.++++||+++.+... .+.+|...|.++.|+|+|+.+++++.|..+++|+
T Consensus 429 kDsTLKvw~V~tkKl~~-------DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 429 KDSTLKVWDVRTKKLKQ-------DLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCceEEEEEeeeeeecc-------cCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999977554 7889999999999999999999999999999996
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.2e-44 Score=269.24 Aligned_cols=227 Identities=21% Similarity=0.331 Sum_probs=208.7
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCC-CCCEEEEEeCCCeEEEEeccCceeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEA-EPRRIGTSSIDTTCTIWDIEREAVDT 79 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~ 79 (253)
.++..||||+ + .+++|+.... ..+.++.+|. ..|.++.|+|. ++..+++|+.||++++|++.+..++.
T Consensus 185 ~ds~~laT~swsG~~kvW~~~~~----~~~~~l~gH~-----~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~ 255 (459)
T KOG0272|consen 185 RDSKHLATGSWSGLVKVWSVPQC----NLLQTLRGHT-----SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ 255 (459)
T ss_pred cCCCeEEEeecCCceeEeecCCc----ceeEEEeccc-----cceeeEEEccCCCccceeeeccCCceeeeccCCCcchh
Confidence 4678899998 5 9999999987 8899999999 89999999976 47789999999999999999999999
Q ss_pred eeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558 80 QLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL 158 (253)
Q Consensus 80 ~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~ 158 (253)
.+.+|...|..++|+ +|++|+|++.|.+-++||++++.. +....+|...|.+++|+| +|.++++|+.|.. -+||
T Consensus 256 ~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E---lL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~-~RvW 330 (459)
T KOG0272|consen 256 DLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE---LLLQEGHSKGVFSIAFQP-DGSLAATGGLDSL-GRVW 330 (459)
T ss_pred hhhcchhhheeeeecCCCceeeecccccchhhcccccchh---hHhhcccccccceeEecC-CCceeeccCccch-hhee
Confidence 999999999999999 999999999999999999999873 444467888999999999 9999999999998 9999
Q ss_pred ECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcC-CCC
Q 035558 159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS-SQP 237 (253)
Q Consensus 159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 237 (253)
|+|++.. +..+.+|..+|.+|+|+|+| +.|+|||.|++++|||++..+... ...+|.+-|+.|.|+| .|.
T Consensus 331 DlRtgr~-im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~~ly-------~ipAH~nlVS~Vk~~p~~g~ 401 (459)
T KOG0272|consen 331 DLRTGRC-IMFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRSELY-------TIPAHSNLVSQVKYSPQEGY 401 (459)
T ss_pred ecccCcE-EEEecccccceeeEeECCCc-eEEeecCCCCcEEEeeecccccce-------ecccccchhhheEecccCCe
Confidence 9999875 89999999999999999999 799999999999999999887654 7889999999999999 566
Q ss_pred ceEEEEcCCcEEEEE
Q 035558 238 DWVAIAFSTKLQILR 252 (253)
Q Consensus 238 ~~~~~~~~~~i~vw~ 252 (253)
+|++++.|+.++||.
T Consensus 402 fL~TasyD~t~kiWs 416 (459)
T KOG0272|consen 402 FLVTASYDNTVKIWS 416 (459)
T ss_pred EEEEcccCcceeeec
Confidence 777999999999995
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.7e-44 Score=268.49 Aligned_cols=228 Identities=21% Similarity=0.323 Sum_probs=210.2
Q ss_pred CC-CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558 2 CQ-KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD 78 (253)
Q Consensus 2 p~-~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 78 (253)
|. ++.-+|+|+ | ++++|++++. .++..+.+|. ..|..++|+ |+|++|++++.|.+-++||++++..+
T Consensus 227 P~~~~~~lat~s~Dgtvklw~~~~e----~~l~~l~gH~-----~RVs~VafH-PsG~~L~TasfD~tWRlWD~~tk~El 296 (459)
T KOG0272|consen 227 PVDSDLNLATASADGTVKLWKLSQE----TPLQDLEGHL-----ARVSRVAFH-PSGKFLGTASFDSTWRLWDLETKSEL 296 (459)
T ss_pred cCCCccceeeeccCCceeeeccCCC----cchhhhhcch-----hhheeeeec-CCCceeeecccccchhhcccccchhh
Confidence 55 466788887 6 9999999997 8899999999 899999999 89999999999999999999999988
Q ss_pred eeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558 79 TQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV 157 (253)
Q Consensus 79 ~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~ 157 (253)
....+|...|.+++|+ +|.++++|+.|..-++||++++.++..+ .+|..+|.+++|+| +|..+|+|+.|+. ++|
T Consensus 297 L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L---~gH~k~I~~V~fsP-NGy~lATgs~Dnt-~kV 371 (459)
T KOG0272|consen 297 LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFL---AGHIKEILSVAFSP-NGYHLATGSSDNT-CKV 371 (459)
T ss_pred HhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEe---cccccceeeEeECC-CceEEeecCCCCc-EEE
Confidence 8889999999999999 9999999999999999999999854443 45777999999999 9999999999999 999
Q ss_pred EECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC
Q 035558 158 LDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP 237 (253)
Q Consensus 158 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 237 (253)
||++.... +..+.+|..-|+.++|+|+.+++|+|++.|++++||..++..... .+.+|.+.|.++..+++++
T Consensus 372 WDLR~r~~-ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~k-------sLaGHe~kV~s~Dis~d~~ 443 (459)
T KOG0272|consen 372 WDLRMRSE-LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLK-------SLAGHEGKVISLDISPDSQ 443 (459)
T ss_pred eeeccccc-ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccch-------hhcCCccceEEEEeccCCc
Confidence 99998665 999999999999999999665899999999999999999887654 8889999999999999999
Q ss_pred ceEEEEcCCcEEEEE
Q 035558 238 DWVAIAFSTKLQILR 252 (253)
Q Consensus 238 ~~~~~~~~~~i~vw~ 252 (253)
.+++++.|.++++|.
T Consensus 444 ~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 444 AIATSSFDRTIKLWR 458 (459)
T ss_pred eEEEeccCceeeecc
Confidence 999999999999996
No 4
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.6e-40 Score=232.17 Aligned_cols=231 Identities=17% Similarity=0.240 Sum_probs=201.9
Q ss_pred CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
+++..||+++. .||+||++++ ...++.++.+|. ..|+++.|. .+++++++|++||+++|||++...+.+.+
T Consensus 50 pdk~~LAaa~~qhvRlyD~~S~--np~Pv~t~e~h~-----kNVtaVgF~-~dgrWMyTgseDgt~kIWdlR~~~~qR~~ 121 (311)
T KOG0315|consen 50 PDKKDLAAAGNQHVRLYDLNSN--NPNPVATFEGHT-----KNVTAVGFQ-CDGRWMYTGSEDGTVKIWDLRSLSCQRNY 121 (311)
T ss_pred CCcchhhhccCCeeEEEEccCC--CCCceeEEeccC-----CceEEEEEe-ecCeEEEecCCCceEEEEeccCcccchhc
Confidence 56778888888 9999999984 345899999998 789999999 99999999999999999999986666655
Q ss_pred ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558 82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160 (253)
Q Consensus 82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~ 160 (253)
+ |..+|+++..+ +...|++|..+|.|++||+....+...+.. .....|.++...| ++.+++.+...|+ .++|++
T Consensus 122 ~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP--e~~~~i~sl~v~~-dgsml~a~nnkG~-cyvW~l 196 (311)
T KOG0315|consen 122 Q-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP--EDDTSIQSLTVMP-DGSMLAAANNKGN-CYVWRL 196 (311)
T ss_pred c-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC--CCCcceeeEEEcC-CCcEEEEecCCcc-EEEEEc
Confidence 5 78999999999 889999999999999999998865444333 3335899999999 9999999999998 999998
Q ss_pred CCCC-----CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC
Q 035558 161 RFPT-----LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS 235 (253)
Q Consensus 161 ~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 235 (253)
-... +|+..++.|+..+..+.++|++ ++|+++|.|.+++||+.+..-+.. ..+.+|...+...+||.+
T Consensus 197 ~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~iwn~~~~~kle------~~l~gh~rWvWdc~FS~d 269 (311)
T KOG0315|consen 197 LNHQTASELEPVHKFQAHNGHILRCLLSPDV-KYLATCSSDKTVKIWNTDDFFKLE------LVLTGHQRWVWDCAFSAD 269 (311)
T ss_pred cCCCccccceEhhheecccceEEEEEECCCC-cEEEeecCCceEEEEecCCceeeE------EEeecCCceEEeeeeccC
Confidence 6533 4678899999999999999999 799999999999999999873222 577889999999999999
Q ss_pred CCceEEEEcCCcEEEEEC
Q 035558 236 QPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 236 ~~~~~~~~~~~~i~vw~l 253 (253)
++++++++.|+.+++|++
T Consensus 270 g~YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 270 GEYLVTASSDHTARLWDL 287 (311)
T ss_pred ccEEEecCCCCceeeccc
Confidence 999999999999999986
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-39 Score=231.24 Aligned_cols=232 Identities=19% Similarity=0.341 Sum_probs=201.0
Q ss_pred CCCCceEEeec-C-cEEEEEccCCcccc-ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558 2 CQKPDLLATSS-D-FLRVWRISDEDRRV-ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD 78 (253)
Q Consensus 2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 78 (253)
|.+.+++.+++ | ++.+|++...+..+ .+++.++||. ..|..+..+ +++++.++++.|+++++||+.+++..
T Consensus 25 ~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHs-----H~v~dv~~s-~dg~~alS~swD~~lrlWDl~~g~~t 98 (315)
T KOG0279|consen 25 IKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHS-----HFVSDVVLS-SDGNFALSASWDGTLRLWDLATGEST 98 (315)
T ss_pred cCCCceEEEcccceEEEEEEeccCccccCceeeeeeccc-----eEecceEEc-cCCceEEeccccceEEEEEecCCcEE
Confidence 45677888888 4 99999997642222 5678899998 789999999 99999999999999999999999999
Q ss_pred eeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC-CCEEEEEEeCCCeEE
Q 035558 79 TQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD-PRYMATIIMDSAKVV 156 (253)
Q Consensus 79 ~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~i~ 156 (253)
+.|.+|...|.+++|+ +.+.+++|+.|.+|++|+....... .+... .+...|.|+.|+|+. ..+|++++.|+. |+
T Consensus 99 ~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~-t~~~~-~~~~WVscvrfsP~~~~p~Ivs~s~Dkt-vK 175 (315)
T KOG0279|consen 99 RRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKY-TIHED-SHREWVSCVRFSPNESNPIIVSASWDKT-VK 175 (315)
T ss_pred EEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEE-EEecC-CCcCcEEEEEEcCCCCCcEEEEccCCce-EE
Confidence 9999999999999999 9999999999999999999876522 22222 225699999999954 678889999998 99
Q ss_pred EEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC
Q 035558 157 VLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ 236 (253)
Q Consensus 157 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 236 (253)
+||+++.+. ...+.+|.+.++.++++||| .++++|+.||.+.+||++.++. ....+|...|.+++|+|+.
T Consensus 176 vWnl~~~~l-~~~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~--------lysl~a~~~v~sl~fspnr 245 (315)
T KOG0279|consen 176 VWNLRNCQL-RTTFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKN--------LYSLEAFDIVNSLCFSPNR 245 (315)
T ss_pred EEccCCcch-hhccccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCce--------eEeccCCCeEeeEEecCCc
Confidence 999998764 78889999999999999999 5999999999999999999875 3667899999999999986
Q ss_pred CceEEEEcCCcEEEEEC
Q 035558 237 PDWVAIAFSTKLQILRV 253 (253)
Q Consensus 237 ~~~~~~~~~~~i~vw~l 253 (253)
++++.+.+..|+||++
T Consensus 246 -ywL~~at~~sIkIwdl 261 (315)
T KOG0279|consen 246 -YWLCAATATSIKIWDL 261 (315)
T ss_pred -eeEeeccCCceEEEec
Confidence 6888888889999985
No 6
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.7e-40 Score=263.97 Aligned_cols=231 Identities=19% Similarity=0.292 Sum_probs=204.9
Q ss_pred CCCceEEeec-C-cEEEEEccCC---------------------------ccccceeeeecCCCCccccCCeeEEEecCC
Q 035558 3 QKPDLLATSS-D-FLRVWRISDE---------------------------DRRVELKSLLNGNKNSEYCGPLTSFDWNEA 53 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 53 (253)
+++.+||.|- + .|++|.+... .......+++.+|. ++|..++|+ |
T Consensus 388 ddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~-----GPVyg~sFs-P 461 (707)
T KOG0263|consen 388 DDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS-----GPVYGCSFS-P 461 (707)
T ss_pred CCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC-----Cceeeeeec-c
Confidence 4556777776 5 9999998731 01122345577888 999999999 8
Q ss_pred CCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCe
Q 035558 54 EPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPL 132 (253)
Q Consensus 54 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i 132 (253)
+.++|++++.|+++|+|.+.+..++-.+++|..||+++.|+ .|-+|||++.|++-++|......+ .....+|...|
T Consensus 462 d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~P---lRifaghlsDV 538 (707)
T KOG0263|consen 462 DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKP---LRIFAGHLSDV 538 (707)
T ss_pred cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCc---hhhhccccccc
Confidence 99999999999999999999999999999999999999999 999999999999999999988764 33445777799
Q ss_pred eEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCC
Q 035558 133 VRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVE 212 (253)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 212 (253)
.|+.|+| +.+++++|+.|.. |++||..++.. +..|.+|.++|.+++|+|+| ++|++|+.||.|.+||+.++....
T Consensus 539 ~cv~FHP-Ns~Y~aTGSsD~t-VRlWDv~~G~~-VRiF~GH~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~~v~- 613 (707)
T KOG0263|consen 539 DCVSFHP-NSNYVATGSSDRT-VRLWDVSTGNS-VRIFTGHKGPVTALAFSPCG-RYLASGDEDGLIKIWDLANGSLVK- 613 (707)
T ss_pred ceEEECC-cccccccCCCCce-EEEEEcCCCcE-EEEecCCCCceEEEEEcCCC-ceEeecccCCcEEEEEcCCCcchh-
Confidence 9999999 9999999999988 99999999775 99999999999999999999 799999999999999999987654
Q ss_pred CCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 213 GGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
.+.+|.+.|.++.|+.+|..|++++.|+.|++|++
T Consensus 614 ------~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 614 ------QLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred ------hhhcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 78899999999999999999999999999999985
No 7
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=2.6e-38 Score=237.47 Aligned_cols=245 Identities=24% Similarity=0.417 Sum_probs=204.6
Q ss_pred CCCCceEEeecC--cEEEEEccCCcc------ccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEecc
Q 035558 2 CQKPDLLATSSD--FLRVWRISDEDR------RVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE 73 (253)
Q Consensus 2 p~~~~~l~~~~~--~v~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 73 (253)
|++..++|+.+. .|.|||...... ...+...+.+|+ ..-++++|++.....|++|+.|+.|++||+.
T Consensus 134 PQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~-----~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~ 208 (422)
T KOG0264|consen 134 PQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHE-----KEGYGLSWNRQQEGTLLSGSDDHTICLWDIN 208 (422)
T ss_pred CCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeec-----ccccccccccccceeEeeccCCCcEEEEecc
Confidence 899999998875 999999876422 223344788998 4566899998778899999999999999997
Q ss_pred Cce-------eeeeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCE
Q 035558 74 REA-------VDTQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRY 144 (253)
Q Consensus 74 ~~~-------~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 144 (253)
... ....+.+|...|.+++|+ +..+|++++.|+.+.|||+|++ ..........|.+.+.|++|+|.++.+
T Consensus 209 ~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~i 287 (422)
T KOG0264|consen 209 AESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEFI 287 (422)
T ss_pred ccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCce
Confidence 543 345677999999999999 8899999999999999999974 333444556788899999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCC----CCCCC---
Q 035558 145 MATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVE----GGLDP--- 217 (253)
Q Consensus 145 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~--- 217 (253)
||+|+.|++ |.+||+|+...++..+.+|...|.++.|+|.....|++++.|+.+.|||+..-..... ....|
T Consensus 288 lAT~S~D~t-V~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEll 366 (422)
T KOG0264|consen 288 LATGSADKT-VALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELL 366 (422)
T ss_pred EEeccCCCc-EEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCccee
Confidence 999999999 9999999999999999999999999999999888999999999999999987553320 11112
Q ss_pred eeeccCCCceeEEEEcCCCCceE-EEEcCCcEEEEEC
Q 035558 218 ILAYTAGAEIEQLQWSSSQPDWV-AIAFSTKLQILRV 253 (253)
Q Consensus 218 ~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~vw~l 253 (253)
..-.||...|..+.|+|..+..+ +++.|+.++||++
T Consensus 367 F~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 367 FIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred EEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 23347899999999999998766 6888999999986
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.7e-39 Score=236.75 Aligned_cols=209 Identities=25% Similarity=0.334 Sum_probs=180.9
Q ss_pred ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCC
Q 035558 28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADG 106 (253)
Q Consensus 28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg 106 (253)
++...+.+|. ++|.|+.|+ |++..|++|+.|.++|+||+.+..+..+.++|...|.+++|+ |+..||+|+.||
T Consensus 106 rCssS~~GH~-----e~Vl~~~fs-p~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg 179 (480)
T KOG0271|consen 106 RCSSSIAGHG-----EAVLSVQFS-PTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDG 179 (480)
T ss_pred eeccccCCCC-----CcEEEEEec-CCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCC
Confidence 5566788898 899999999 699999999999999999999999999999999999999999 999999999999
Q ss_pred cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC----CCCEEEEEEeCCCeEEEEECCCCCC-----------------
Q 035558 107 SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ----DPRYMATIIMDSAKVVVLDIRFPTL----------------- 165 (253)
Q Consensus 107 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~~~~~i~~~d~~~~~~----------------- 165 (253)
+|++||.+++++ ......+|...|++++|.|. ..+++|+++.||. ++|||+.....
T Consensus 180 ~I~lwdpktg~~--~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~-vrIWd~~~~~~~~~lsgHT~~VTCvrwG 256 (480)
T KOG0271|consen 180 SIRLWDPKTGQQ--IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGS-VRIWDTKLGTCVRTLSGHTASVTCVRWG 256 (480)
T ss_pred eEEEecCCCCCc--ccccccCcccceeEEeecccccCCCccceecccCCCC-EEEEEccCceEEEEeccCccceEEEEEc
Confidence 999999998873 34445677778888888762 3456777777777 77777643211
Q ss_pred --------------------------------------------------------------------------------
Q 035558 166 -------------------------------------------------------------------------------- 165 (253)
Q Consensus 166 -------------------------------------------------------------------------------- 165 (253)
T Consensus 257 G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~ 336 (480)
T KOG0271|consen 257 GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSG 336 (480)
T ss_pred CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCc
Confidence
Q ss_pred ----------------------CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC
Q 035558 166 ----------------------PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA 223 (253)
Q Consensus 166 ----------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 223 (253)
|+..+.+|..-|+.+.|+||+ ++++++|-|..|++||-++++... .+.+|
T Consensus 337 erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~tGk~la-------sfRGH 408 (480)
T KOG0271|consen 337 ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRTGKFLA-------SFRGH 408 (480)
T ss_pred ceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCc-cEEEEeecccceeeeeCCCcchhh-------hhhhc
Confidence 344566888999999999999 799999999999999999998765 88899
Q ss_pred CCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 224 GAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 224 ~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
-.+|+.++|+.|.+.+++++.|.++++|++
T Consensus 409 v~~VYqvawsaDsRLlVS~SkDsTLKvw~V 438 (480)
T KOG0271|consen 409 VAAVYQVAWSADSRLLVSGSKDSTLKVWDV 438 (480)
T ss_pred cceeEEEEeccCccEEEEcCCCceEEEEEe
Confidence 999999999999998889999999999986
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-37 Score=219.64 Aligned_cols=231 Identities=20% Similarity=0.255 Sum_probs=188.7
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
+++++..+++ | ++++||+..+ +..+.|.+|. ..|.+++|+ ++.+.+++|+.|.+|++|+.... +..+
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g----~~t~~f~GH~-----~dVlsva~s-~dn~qivSGSrDkTiklwnt~g~-ck~t 141 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATG----ESTRRFVGHT-----KDVLSVAFS-TDNRQIVSGSRDKTIKLWNTLGV-CKYT 141 (315)
T ss_pred cCCceEEeccccceEEEEEecCC----cEEEEEEecC-----CceEEEEec-CCCceeecCCCcceeeeeeeccc-EEEE
Confidence 4667777776 6 9999999998 8899999999 899999999 89999999999999999999754 4444
Q ss_pred eec--ccccEEEEEec-C--CCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558 81 LIA--HDKEVYDIAWG-G--VGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV 155 (253)
Q Consensus 81 ~~~--~~~~v~~~~~~-~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i 155 (253)
+.. +.+.|.+++|+ + ..+|++++.|++|++||+++-+ ......+|.+.++.++++| +|.++++|+.||. +
T Consensus 142 ~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~---l~~~~~gh~~~v~t~~vSp-DGslcasGgkdg~-~ 216 (315)
T KOG0279|consen 142 IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ---LRTTFIGHSGYVNTVTVSP-DGSLCASGGKDGE-A 216 (315)
T ss_pred EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc---hhhccccccccEEEEEECC-CCCEEecCCCCce-E
Confidence 443 37899999999 4 6799999999999999999876 3444567888999999999 9999999999998 9
Q ss_pred EEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCe--eeccCCCceeEEEEc
Q 035558 156 VVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPI--LAYTAGAEIEQLQWS 233 (253)
Q Consensus 156 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~ 233 (253)
.+||++..+. +..+. |...|.+++|+|+. +.+++..+..|+|||+.+.........+.. ..........+++|+
T Consensus 217 ~LwdL~~~k~-lysl~-a~~~v~sl~fspnr--ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws 292 (315)
T KOG0279|consen 217 MLWDLNEGKN-LYSLE-AFDIVNSLCFSPNR--YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWS 292 (315)
T ss_pred EEEEccCCce-eEecc-CCCeEeeEEecCCc--eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEc
Confidence 9999998764 55554 67899999999996 455555677799999998875542111111 111224556889999
Q ss_pred CCCCceEEEEcCCcEEEEEC
Q 035558 234 SSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 234 ~~~~~~~~~~~~~~i~vw~l 253 (253)
++|+.|+++-.|+.|++|++
T Consensus 293 ~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 293 ADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred CCCcEEEeeecCCcEEEEEe
Confidence 99999999999999999985
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.4e-37 Score=215.55 Aligned_cols=232 Identities=12% Similarity=0.196 Sum_probs=196.2
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce--ee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA--VD 78 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~ 78 (253)
+..-+|++++ | +||+|...++ .+.++++... +.|+.+... |+++.||+++. ..||+||+++++ ++
T Consensus 8 d~~viLvsA~YDhTIRfWqa~tG----~C~rTiqh~d-----sqVNrLeiT-pdk~~LAaa~~-qhvRlyD~~S~np~Pv 76 (311)
T KOG0315|consen 8 DDPVILVSAGYDHTIRFWQALTG----ICSRTIQHPD-----SQVNRLEIT-PDKKDLAAAGN-QHVRLYDLNSNNPNPV 76 (311)
T ss_pred CCceEEEeccCcceeeeeehhcC----eEEEEEecCc-----cceeeEEEc-CCcchhhhccC-CeeEEEEccCCCCCce
Confidence 3456888887 6 9999999999 9999998887 899999999 88999988874 689999999876 68
Q ss_pred eeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558 79 TQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV 157 (253)
Q Consensus 79 ~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~ 157 (253)
.++.+|+..|+++.|. +++.+++|++||+++|||++.....+.. .+..+|+++..+| +...|+++..+|. |++
T Consensus 77 ~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~----~~~spVn~vvlhp-nQteLis~dqsg~-irv 150 (311)
T KOG0315|consen 77 ATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY----QHNSPVNTVVLHP-NQTELISGDQSGN-IRV 150 (311)
T ss_pred eEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc----cCCCCcceEEecC-CcceEEeecCCCc-EEE
Confidence 8899999999999999 9999999999999999999996543332 4456999999999 8889999999999 999
Q ss_pred EECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC
Q 035558 158 LDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP 237 (253)
Q Consensus 158 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 237 (253)
||++........+.....+|.++...|+| .+|+.+...|+.++|++-...... ...+...+..|...+..+.+||+++
T Consensus 151 WDl~~~~c~~~liPe~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~s-~l~P~~k~~ah~~~il~C~lSPd~k 228 (311)
T KOG0315|consen 151 WDLGENSCTHELIPEDDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTAS-ELEPVHKFQAHNGHILRCLLSPDVK 228 (311)
T ss_pred EEccCCccccccCCCCCcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCccc-cceEhhheecccceEEEEEECCCCc
Confidence 99998653233344456789999999999 699999999999999998744221 1122345678999999999999999
Q ss_pred ceEEEEcCCcEEEEEC
Q 035558 238 DWVAIAFSTKLQILRV 253 (253)
Q Consensus 238 ~~~~~~~~~~i~vw~l 253 (253)
+|++++.|..++||+.
T Consensus 229 ~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 229 YLATCSSDKTVKIWNT 244 (311)
T ss_pred EEEeecCCceEEEEec
Confidence 9999999999999974
No 11
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.3e-37 Score=218.65 Aligned_cols=229 Identities=17% Similarity=0.248 Sum_probs=202.0
Q ss_pred CCCceEEeec-C-cEEEEEccCC--ccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDE--DRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD 78 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 78 (253)
|.++++|+|+ | ...||++... +...+..+++.+|. +.+.|+.|- +...|++++.|.+..+||+++++.+
T Consensus 107 PSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHt-----gylScC~f~--dD~~ilT~SGD~TCalWDie~g~~~ 179 (343)
T KOG0286|consen 107 PSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHT-----GYLSCCRFL--DDNHILTGSGDMTCALWDIETGQQT 179 (343)
T ss_pred CCCCeEEecCcCceeEEEecccccccccceeeeeecCcc-----ceeEEEEEc--CCCceEecCCCceEEEEEcccceEE
Confidence 6788899988 6 8999999864 33456778899999 899999996 4778899999999999999999999
Q ss_pred eeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558 79 TQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV 156 (253)
Q Consensus 79 ~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~ 156 (253)
..+.+|.+.|.++++. +++.|++|+-|++.++||+|.+.. .....+|++.|++++|.| ++.-|++|+.|+. .+
T Consensus 180 ~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c---~qtF~ghesDINsv~ffP-~G~afatGSDD~t-cR 254 (343)
T KOG0286|consen 180 QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC---VQTFEGHESDINSVRFFP-SGDAFATGSDDAT-CR 254 (343)
T ss_pred EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce---eEeecccccccceEEEcc-CCCeeeecCCCce-eE
Confidence 9999999999999999 899999999999999999999974 444468888999999999 9999999999998 99
Q ss_pred EEECCCCCCCeeeecc--cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcC
Q 035558 157 VLDIRFPTLPVVELQR--HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS 234 (253)
Q Consensus 157 ~~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 234 (253)
+||+|...+ +..+.. -..+|++++|+..| ++|++|..|.++.+||.-.++... .+.+|.++|.++..+|
T Consensus 255 lyDlRaD~~-~a~ys~~~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk~e~vg-------~L~GHeNRvScl~~s~ 325 (343)
T KOG0286|consen 255 LYDLRADQE-LAVYSHDSIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGERVG-------VLAGHENRVSCLGVSP 325 (343)
T ss_pred EEeecCCcE-EeeeccCcccCCceeEEEcccc-cEEEeeecCCceeEeeccccceEE-------EeeccCCeeEEEEECC
Confidence 999998664 444442 34589999999999 799999999999999998877654 7889999999999999
Q ss_pred CCCceEEEEcCCcEEEEE
Q 035558 235 SQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 235 ~~~~~~~~~~~~~i~vw~ 252 (253)
+|..+.+++-|..+|||.
T Consensus 326 DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 326 DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCcEEEecchhHheeecC
Confidence 999888999999999994
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.8e-36 Score=216.35 Aligned_cols=230 Identities=14% Similarity=0.155 Sum_probs=199.0
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-----
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE----- 75 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----- 75 (253)
.+.++|++++ | .+.|||.-+. .....+.-.. .-|..++|+ |+++++|.|+.|+...||++.+.
T Consensus 65 ~Dsr~ivSaSqDGklIvWDs~Tt----nK~haipl~s-----~WVMtCA~s-PSg~~VAcGGLdN~Csiy~ls~~d~~g~ 134 (343)
T KOG0286|consen 65 TDSRRIVSASQDGKLIVWDSFTT----NKVHAIPLPS-----SWVMTCAYS-PSGNFVACGGLDNKCSIYPLSTRDAEGN 134 (343)
T ss_pred CCcCeEEeeccCCeEEEEEcccc----cceeEEecCc-----eeEEEEEEC-CCCCeEEecCcCceeEEEeccccccccc
Confidence 3566777777 5 9999998876 5555566666 789999999 89999999999999999999855
Q ss_pred -eeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCe
Q 035558 76 -AVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAK 154 (253)
Q Consensus 76 -~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~ 154 (253)
+..+.+.+|++.+.+..|.+...|+|++.|.+..+||+++++ .+....+|.+.|.++++.|.+++.+++|+-|..
T Consensus 135 ~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~---~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~- 210 (343)
T KOG0286|consen 135 VRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQ---QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKS- 210 (343)
T ss_pred ceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccce---EEEEecCCcccEEEEecCCCCCCeEEecccccc-
Confidence 245668899999999999988899999999999999999998 445556889999999999999999999999999
Q ss_pred EEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcC
Q 035558 155 VVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS 234 (253)
Q Consensus 155 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 234 (253)
.++||+|.+. +++.|.+|+..|++++|.|+| .-+++|++|++.++||++...+.. ......-..+|++++||.
T Consensus 211 aklWD~R~~~-c~qtF~ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD~~~a-----~ys~~~~~~gitSv~FS~ 283 (343)
T KOG0286|consen 211 AKLWDVRSGQ-CVQTFEGHESDINSVRFFPSG-DAFATGSDDATCRLYDLRADQELA-----VYSHDSIICGITSVAFSK 283 (343)
T ss_pred eeeeeccCcc-eeEeecccccccceEEEccCC-CeeeecCCCceeEEEeecCCcEEe-----eeccCcccCCceeEEEcc
Confidence 9999999975 699999999999999999999 599999999999999999977543 112223367899999999
Q ss_pred CCCceEEEEcCCcEEEEEC
Q 035558 235 SQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 235 ~~~~~~~~~~~~~i~vw~l 253 (253)
.|+.|+++..|..+.+|+.
T Consensus 284 SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 284 SGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred cccEEEeeecCCceeEeec
Confidence 9999999999999999983
No 13
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-37 Score=218.49 Aligned_cols=229 Identities=25% Similarity=0.382 Sum_probs=200.6
Q ss_pred ceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecc
Q 035558 6 DLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAH 84 (253)
Q Consensus 6 ~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 84 (253)
.++++.+| ++++||+... ..++..++.|+ ..|.++.|++.....+++++.|++|++|+...++.++++.+|
T Consensus 75 ~~~~a~GDGSLrl~d~~~~---s~Pi~~~kEH~-----~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh 146 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTMP---SKPIHKFKEHK-----REVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGH 146 (311)
T ss_pred eEEEEecCceEEEeccCCC---CcchhHHHhhh-----hheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCC
Confidence 34555556 9999996543 36788899999 899999999888888999999999999999999999999999
Q ss_pred cccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCC
Q 035558 85 DKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF 162 (253)
Q Consensus 85 ~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~ 162 (253)
...|...+|+ .++++++++.|+++++||++....... ...|...+.++.|+..+.+.+++|+.|+. |+.||+|+
T Consensus 147 ~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~---i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~-vr~wDir~ 222 (311)
T KOG0277|consen 147 NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS---IEAHNSEILCCDWSKYNHNVLATGGVDNL-VRGWDIRN 222 (311)
T ss_pred ccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE---EEeccceeEeecccccCCcEEEecCCCce-EEEEehhh
Confidence 9999999999 899999999999999999998764333 34556799999999989999999999998 99999999
Q ss_pred CCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC-ceEE
Q 035558 163 PTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP-DWVA 241 (253)
Q Consensus 163 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~ 241 (253)
.+.|+.++.+|.-.|..++|+|....+|++++.|-+++|||........ .....|..-+..+.|++..+ ++++
T Consensus 223 ~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~------e~~~~HtEFv~g~Dws~~~~~~vAs 296 (311)
T KOG0277|consen 223 LRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAI------ETVDHHTEFVCGLDWSLFDPGQVAS 296 (311)
T ss_pred ccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhh------hhhhccceEEeccccccccCceeee
Confidence 9999999999999999999999887799999999999999999766443 35557899999999998755 4557
Q ss_pred EEcCCcEEEEE
Q 035558 242 IAFSTKLQILR 252 (253)
Q Consensus 242 ~~~~~~i~vw~ 252 (253)
++-|+.+.||+
T Consensus 297 ~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 297 TGWDELLYVWN 307 (311)
T ss_pred cccccceeeec
Confidence 88999999997
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.1e-36 Score=239.02 Aligned_cols=228 Identities=17% Similarity=0.292 Sum_probs=204.7
Q ss_pred CCceEEeecC---cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 4 KPDLLATSSD---FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 4 ~~~~l~~~~~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
.|+.||.|+. .+-||+.... ..+...++|. ..+++++++ |+++++++|+.||.|+|||..++-+..+
T Consensus 318 tGDWiA~g~~klgQLlVweWqsE----sYVlKQQgH~-----~~i~~l~YS-pDgq~iaTG~eDgKVKvWn~~SgfC~vT 387 (893)
T KOG0291|consen 318 TGDWIAFGCSKLGQLLVWEWQSE----SYVLKQQGHS-----DRITSLAYS-PDGQLIATGAEDGKVKVWNTQSGFCFVT 387 (893)
T ss_pred cCCEEEEcCCccceEEEEEeecc----ceeeeccccc-----cceeeEEEC-CCCcEEEeccCCCcEEEEeccCceEEEE
Confidence 5888998884 8999999987 7788888999 899999999 9999999999999999999999999999
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
+..|+..|+.+.|+ .++.+++.+.||+|+.||+......+....+.. ....+++..| .|.++.+|+.|.-.|.+|+
T Consensus 388 FteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p--~QfscvavD~-sGelV~AG~~d~F~IfvWS 464 (893)
T KOG0291|consen 388 FTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP--IQFSCVAVDP-SGELVCAGAQDSFEIFVWS 464 (893)
T ss_pred eccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCc--eeeeEEEEcC-CCCEEEeeccceEEEEEEE
Confidence 99999999999999 999999999999999999998876655544322 2678899999 8999999999988899999
Q ss_pred CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558 160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW 239 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 239 (253)
+++++. +..+.+|+++|.+++|+|.+ ..|+++|.|.+|++||+-...... ....+...+.+++|+|+|+.+
T Consensus 465 ~qTGql-lDiLsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~~v-------Etl~i~sdvl~vsfrPdG~el 535 (893)
T KOG0291|consen 465 VQTGQL-LDILSGHEGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSGTV-------ETLEIRSDVLAVSFRPDGKEL 535 (893)
T ss_pred eecCee-eehhcCCCCcceeeEEcccc-CeEEeccccceEEEEEeeccCcee-------eeEeeccceeEEEEcCCCCeE
Confidence 999875 88999999999999999999 599999999999999998765443 555678889999999999999
Q ss_pred EEEEcCCcEEEEEC
Q 035558 240 VAIAFSTKLQILRV 253 (253)
Q Consensus 240 ~~~~~~~~i~vw~l 253 (253)
+.+..||.|.+|+.
T Consensus 536 aVaTldgqItf~d~ 549 (893)
T KOG0291|consen 536 AVATLDGQITFFDI 549 (893)
T ss_pred EEEEecceEEEEEh
Confidence 99999999999984
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.7e-36 Score=228.79 Aligned_cols=227 Identities=23% Similarity=0.385 Sum_probs=204.8
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
.+|.+||+|+ + .+++|+... .++.++..|+ ++|+++.|+ ..+++|++++.|+++.+||..+++..+.
T Consensus 245 ~~G~~LatG~~~G~~riw~~~G-----~l~~tl~~Hk-----gPI~slKWn-k~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 245 NDGTLLATGSEDGEARIWNKDG-----NLISTLGQHK-----GPIFSLKWN-KKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred CCCCeEEEeecCcEEEEEecCc-----hhhhhhhccC-----CceEEEEEc-CCCCEEEeccCCccEEEEeccCceEEEe
Confidence 3689999999 4 999999988 7889999999 999999999 9999999999999999999999999999
Q ss_pred eecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558 81 LIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160 (253)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~ 160 (253)
+.-|..+-.++.|-+...|++++.|+.|+++.+....+...+ .+|.++|.++.|+| .+.+|++++.|++ +++|..
T Consensus 314 f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~---~GH~g~V~alk~n~-tg~LLaS~SdD~T-lkiWs~ 388 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTF---IGHHGEVNALKWNP-TGSLLASCSDDGT-LKIWSM 388 (524)
T ss_pred eeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceee---ecccCceEEEEECC-CCceEEEecCCCe-eEeeec
Confidence 998988888899987889999999999999999887754444 35777999999999 9999999999998 999998
Q ss_pred CCCCCCeeeecccccceeEEEEecCCC--------CeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEE
Q 035558 161 RFPTLPVVELQRHQASVNAIAWAPHSS--------CHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQW 232 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 232 (253)
.... ....+.+|+..|+.+.|+|.|+ ..+++++.|++|++||+..+.... .+..|..+|++++|
T Consensus 389 ~~~~-~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~-------~f~kH~~pVysvaf 460 (524)
T KOG0273|consen 389 GQSN-SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH-------TLMKHQEPVYSVAF 460 (524)
T ss_pred CCCc-chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE-------eeccCCCceEEEEe
Confidence 7655 5889999999999999999653 479999999999999999987654 67799999999999
Q ss_pred cCCCCceEEEEcCCcEEEEEC
Q 035558 233 SSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 233 ~~~~~~~~~~~~~~~i~vw~l 253 (253)
+|+++++++++.|+.|.+|..
T Consensus 461 S~~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 461 SPNGRYLASGSLDGCVHIWST 481 (524)
T ss_pred cCCCcEEEecCCCCeeEeccc
Confidence 999999999999999999963
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.4e-38 Score=233.54 Aligned_cols=226 Identities=16% Similarity=0.303 Sum_probs=196.6
Q ss_pred CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
++|+.|++|++ .+.+|+...- .....++.|. .+|.++.|+ +++.++++|+.+|.|++|+..- ..++.
T Consensus 106 PeGRRLltgs~SGEFtLWNg~~f----nFEtilQaHD-----s~Vr~m~ws-~~g~wmiSgD~gG~iKyWqpnm-nnVk~ 174 (464)
T KOG0284|consen 106 PEGRRLLTGSQSGEFTLWNGTSF----NFETILQAHD-----SPVRTMKWS-HNGTWMISGDKGGMIKYWQPNM-NNVKI 174 (464)
T ss_pred CCCceeEeecccccEEEecCcee----eHHHHhhhhc-----ccceeEEEc-cCCCEEEEcCCCceEEecccch-hhhHH
Confidence 46677777775 9999998663 5556678999 999999999 9999999999999999999874 44555
Q ss_pred eeccc-ccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558 81 LIAHD-KEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL 158 (253)
Q Consensus 81 ~~~~~-~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~ 158 (253)
+++|. ..|++++|+ ++..|++++.||+|+|||....++..++ .+|.-.|.+++|+| ...++++++.|.- |++|
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL---~GHgwdVksvdWHP-~kgLiasgskDnl-VKlW 249 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL---RGHGWDVKSVDWHP-TKGLIASGSKDNL-VKLW 249 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee---ccCCCCcceeccCC-ccceeEEccCCce-eEee
Confidence 55554 999999999 9999999999999999999988765555 46666899999999 8889999999996 9999
Q ss_pred ECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCc
Q 035558 159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPD 238 (253)
Q Consensus 159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 238 (253)
|.+++. ++.++..|...|..+.|+|++ .+|+++|.|..+++||+++.+... ...+|...++++.|+|-...
T Consensus 250 DprSg~-cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mkEl~-------~~r~Hkkdv~~~~WhP~~~~ 320 (464)
T KOG0284|consen 250 DPRSGS-CLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKELF-------TYRGHKKDVTSLTWHPLNES 320 (464)
T ss_pred cCCCcc-hhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhHHHH-------Hhhcchhhheeecccccccc
Confidence 999977 599999999999999999999 699999999999999999776554 78899999999999998776
Q ss_pred eE-EEEcCCcEEEEEC
Q 035558 239 WV-AIAFSTKLQILRV 253 (253)
Q Consensus 239 ~~-~~~~~~~i~vw~l 253 (253)
++ +++.|+.+..|.+
T Consensus 321 lftsgg~Dgsvvh~~v 336 (464)
T KOG0284|consen 321 LFTSGGSDGSVVHWVV 336 (464)
T ss_pred ceeeccCCCceEEEec
Confidence 66 7889999999864
No 17
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.6e-38 Score=232.99 Aligned_cols=228 Identities=17% Similarity=0.301 Sum_probs=200.1
Q ss_pred CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
.++..+++|++ .|++|+.+- ..++.+++|.. ..|++++|+ |+...+++++.||+|+|||....+....
T Consensus 148 ~~g~wmiSgD~gG~iKyWqpnm-----nnVk~~~ahh~----eaIRdlafS-pnDskF~t~SdDg~ikiWdf~~~kee~v 217 (464)
T KOG0284|consen 148 HNGTWMISGDKGGMIKYWQPNM-----NNVKIIQAHHA----EAIRDLAFS-PNDSKFLTCSDDGTIKIWDFRMPKEERV 217 (464)
T ss_pred cCCCEEEEcCCCceEEecccch-----hhhHHhhHhhh----hhhheeccC-CCCceeEEecCCCeEEEEeccCCchhhe
Confidence 57888999885 999999987 45666666542 789999999 6888999999999999999998888888
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
+.+|.-.|.+++|+ ...++++++.|..|++||.+++.++.. ...|...|..+.|+| ++++|++++.|.. ++++|
T Consensus 218 L~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~t---lh~HKntVl~~~f~~-n~N~Llt~skD~~-~kv~D 292 (464)
T KOG0284|consen 218 LRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLAT---LHGHKNTVLAVKFNP-NGNWLLTGSKDQS-CKVFD 292 (464)
T ss_pred eccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhh---hhhccceEEEEEEcC-CCCeeEEccCCce-EEEEe
Confidence 99999999999999 889999999999999999999985444 456777999999999 8899999999998 99999
Q ss_pred CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558 160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW 239 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 239 (253)
+|+.++ +..+++|...++++.|+|-.+.+|.+|+.||.|..|.+...+ |. +.....|...|++++|+|-|..|
T Consensus 293 iR~mkE-l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~-p~-----~~i~~AHd~~iwsl~~hPlGhil 365 (464)
T KOG0284|consen 293 IRTMKE-LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE-PL-----GEIPPAHDGEIWSLAYHPLGHIL 365 (464)
T ss_pred hhHhHH-HHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc-cc-----cCCCcccccceeeeeccccceeE
Confidence 997665 899999999999999999877799999999999999998332 22 24566899999999999999877
Q ss_pred EEEEcCCcEEEEE
Q 035558 240 VAIAFSTKLQILR 252 (253)
Q Consensus 240 ~~~~~~~~i~vw~ 252 (253)
++++.|..+++|.
T Consensus 366 ~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 366 ATGSNDRTVRFWT 378 (464)
T ss_pred eecCCCcceeeec
Confidence 7888999999994
No 18
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.1e-35 Score=207.30 Aligned_cols=228 Identities=21% Similarity=0.342 Sum_probs=197.1
Q ss_pred CCCCceEEeecC--cEEEEEccCCccccceeeee-cCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc--e
Q 035558 2 CQKPDLLATSSD--FLRVWRISDEDRRVELKSLL-NGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE--A 76 (253)
Q Consensus 2 p~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~ 76 (253)
|-.|.+||+++. .||+|+...+ ..+.+...+ .+|+ ..|.+++|+ |.+++|++|+.|.++.||.-..+ +
T Consensus 24 p~~g~ilAscg~Dk~vriw~~~~~-~s~~ck~vld~~hk-----rsVRsvAws-p~g~~La~aSFD~t~~Iw~k~~~efe 96 (312)
T KOG0645|consen 24 PGKGVILASCGTDKAVRIWSTSSG-DSWTCKTVLDDGHK-----RSVRSVAWS-PHGRYLASASFDATVVIWKKEDGEFE 96 (312)
T ss_pred cCCceEEEeecCCceEEEEecCCC-CcEEEEEeccccch-----heeeeeeec-CCCcEEEEeeccceEEEeecCCCcee
Confidence 444778999985 9999999863 445666555 3577 899999999 88999999999999999987755 5
Q ss_pred eeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558 77 VDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV 155 (253)
Q Consensus 77 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i 155 (253)
++..+.+|+..|.+++|+ +|++||+++.|+.|-+|.+..............|...|..+.|+| ...+|+++++|++ |
T Consensus 97 cv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnT-I 174 (312)
T KOG0645|consen 97 CVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNT-I 174 (312)
T ss_pred EEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCe-E
Confidence 888999999999999999 999999999999999999998877777777778888999999999 8999999999999 9
Q ss_pred EEEECCCC--CCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEc
Q 035558 156 VVLDIRFP--TLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWS 233 (253)
Q Consensus 156 ~~~d~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 233 (253)
++|+-... -.+++++.+|...|.+++|+|.| ..|++++.|++++||..... ....|..+++.++|.
T Consensus 175 k~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~~-----------~~~~~sr~~Y~v~W~ 242 (312)
T KOG0645|consen 175 KVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYTD-----------LSGMHSRALYDVPWD 242 (312)
T ss_pred EEEeecCCCCeeEEEEecCccceEEEEEecCCC-ceEEEecCCcceEeeeeccC-----------cchhcccceEeeeec
Confidence 99987632 25689999999999999999999 69999999999999987632 344588999999999
Q ss_pred CCCCceEEEEcCCcEEEEE
Q 035558 234 SSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 234 ~~~~~~~~~~~~~~i~vw~ 252 (253)
++ .+++++.|+.|++++
T Consensus 243 -~~-~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 243 -NG-VIASGGGDDAIRLFK 259 (312)
T ss_pred -cc-ceEeccCCCEEEEEE
Confidence 55 588999999999986
No 19
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.7e-37 Score=223.41 Aligned_cols=226 Identities=19% Similarity=0.261 Sum_probs=202.4
Q ss_pred CceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC-ceeeeee
Q 035558 5 PDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER-EAVDTQL 81 (253)
Q Consensus 5 ~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~ 81 (253)
--++++++ + +|++||..++ ++.+.+++|. ..+.+++|+ ..+.++++++.|-.+++||.++ .+++..+
T Consensus 120 ~~~v~~as~d~tikv~D~~tg----~~e~~LrGHt-----~sv~di~~~-a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~ 189 (406)
T KOG0295|consen 120 EALVVSASEDATIKVFDTETG----ELERSLRGHT-----DSVFDISFD-ASGKYLATCSSDLSAKLWDFDTFFRCIKSL 189 (406)
T ss_pred ceEEEEecCCceEEEEEccch----hhhhhhhccc-----cceeEEEEe-cCccEEEecCCccchhheeHHHHHHHHHHh
Confidence 34567776 4 9999999998 8899999999 789999999 8999999999998899999987 4677888
Q ss_pred ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558 82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160 (253)
Q Consensus 82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~ 160 (253)
.+|...|.++.|- .++++++++.|.+|++|++.++.+... ..+|...+..++.+. ++.++|+++.|.. +++|-+
T Consensus 190 ~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t---~~~h~ewvr~v~v~~-DGti~As~s~dqt-l~vW~~ 264 (406)
T KOG0295|consen 190 IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKT---FPGHSEWVRMVRVNQ-DGTIIASCSNDQT-LRVWVV 264 (406)
T ss_pred cCcccceeeEEEEecCCeeeecccccceeEEecccceeEEe---ccCchHhEEEEEecC-CeeEEEecCCCce-EEEEEe
Confidence 8999999999999 899999999999999999999985444 456666999999998 9999999999998 999999
Q ss_pred CCCCCCeeeecccccceeEEEEecC--------------CCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCc
Q 035558 161 RFPTLPVVELQRHQASVNAIAWAPH--------------SSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAE 226 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~~~~~~--------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 226 (253)
.+.+ +...++.|+.+|-+++|.|. +.+++++++.|++|++||+.++.... .+.+|.+.
T Consensus 265 ~t~~-~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~-------tL~ghdnw 336 (406)
T KOG0295|consen 265 ATKQ-CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLF-------TLVGHDNW 336 (406)
T ss_pred ccch-hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEE-------EEecccce
Confidence 8854 57888999999999999873 22599999999999999999998765 88999999
Q ss_pred eeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 227 IEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 227 v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
|.+++|+|.|+++++++.|+.+++|++
T Consensus 337 Vr~~af~p~Gkyi~ScaDDktlrvwdl 363 (406)
T KOG0295|consen 337 VRGVAFSPGGKYILSCADDKTLRVWDL 363 (406)
T ss_pred eeeeEEcCCCeEEEEEecCCcEEEEEe
Confidence 999999999999999999999999986
No 20
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=100.00 E-value=5.3e-36 Score=213.95 Aligned_cols=248 Identities=75% Similarity=1.195 Sum_probs=220.7
Q ss_pred CCceEEeecCcEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---eeee
Q 035558 4 KPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---VDTQ 80 (253)
Q Consensus 4 ~~~~l~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~ 80 (253)
.+++||+++|.+|+|.+...+....+...+..++...++++++++.|+..+.+++.+.+-|-+..|||++++. ....
T Consensus 112 ~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ 191 (364)
T KOG0290|consen 112 YPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ 191 (364)
T ss_pred CcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE
Confidence 3578999999999999986545566777788888888999999999998899999999999999999999873 4566
Q ss_pred eecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558 81 LIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL 158 (253)
Q Consensus 81 ~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~ 158 (253)
+.+|..+|.+++|. ..+.|++++.||.+|+||+|..+...++++.+....+...++|++.+.+++|+-..|...|.+.
T Consensus 192 LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iL 271 (364)
T KOG0290|consen 192 LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVIL 271 (364)
T ss_pred EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEE
Confidence 77899999999999 5679999999999999999999988899988876679999999999999999999998889999
Q ss_pred ECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCc
Q 035558 159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPD 238 (253)
Q Consensus 159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 238 (253)
|+|....++.+++.|.+.|++++|.|.....+++++.|..+.+||+...-. .....|......+..|+.++|++..+.
T Consensus 272 DiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~--~~~~dPilay~a~~EVNqi~Ws~~~~D 349 (364)
T KOG0290|consen 272 DIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR--ENGEDPILAYTAGGEVNQIQWSSSQPD 349 (364)
T ss_pred EecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc--cCCCCchhhhhccceeeeeeecccCCC
Confidence 999999999999999999999999999888999999999999999987654 112456677778899999999999889
Q ss_pred eEEEEcCCcEEEEEC
Q 035558 239 WVAIAFSTKLQILRV 253 (253)
Q Consensus 239 ~~~~~~~~~i~vw~l 253 (253)
+++.+.++.+.+.++
T Consensus 350 wiai~~~kkleiLRV 364 (364)
T KOG0290|consen 350 WIAICFGKKLEILRV 364 (364)
T ss_pred EEEEEecCeeeEEeC
Confidence 999999999998875
No 21
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.7e-37 Score=226.90 Aligned_cols=220 Identities=16% Similarity=0.317 Sum_probs=196.0
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
+.+.+++|. | +|+|||.+.. .+...+.||+ +.|.|+.|. .+.+++|+.|.+|++||.++++++.++
T Consensus 206 DD~kiVSGlrDnTikiWD~n~~----~c~~~L~GHt-----GSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l~tl 273 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKNSL----ECLKILTGHT-----GSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLNTL 273 (499)
T ss_pred cchhhhcccccCceEEeccccH----HHHHhhhcCC-----CcEEeeecc---ceEEEecCCCceEEEEeccCCchhhHH
Confidence 345677777 4 9999999986 8999999999 999999986 669999999999999999999999999
Q ss_pred ecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558 82 IAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR 161 (253)
Q Consensus 82 ~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~ 161 (253)
..|...|..+.|+ +.++++++.|.++.+||+.............+|...|+.+.|+ .+++++++.|.+ |++|++.
T Consensus 274 ihHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRT-ikvW~~s 348 (499)
T KOG0281|consen 274 IHHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRT-IKVWSTS 348 (499)
T ss_pred hhhcceeEEEEEe-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCce-EEEEecc
Confidence 9999999999996 7799999999999999999887655555667888899999995 569999999998 9999999
Q ss_pred CCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558 162 FPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA 241 (253)
Q Consensus 162 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 241 (253)
+.. .+..+.+|...|.|+.+. + +++++|+.|.+|++||++.+.... .+.+|..-|.++.|.. +.+++
T Consensus 349 t~e-fvRtl~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G~cLR-------vLeGHEeLvRciRFd~--krIVS 415 (499)
T KOG0281|consen 349 TCE-FVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGACLR-------VLEGHEELVRCIRFDN--KRIVS 415 (499)
T ss_pred cee-eehhhhcccccceehhcc--C-eEEEecCCCceEEEEeccccHHHH-------HHhchHHhhhheeecC--ceeee
Confidence 876 489999999999888875 4 699999999999999999998765 8889999999999964 46999
Q ss_pred EEcCCcEEEEEC
Q 035558 242 IAFSTKLQILRV 253 (253)
Q Consensus 242 ~~~~~~i~vw~l 253 (253)
++.||.|+||++
T Consensus 416 GaYDGkikvWdl 427 (499)
T KOG0281|consen 416 GAYDGKIKVWDL 427 (499)
T ss_pred ccccceEEEEec
Confidence 999999999986
No 22
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-35 Score=206.00 Aligned_cols=222 Identities=16% Similarity=0.339 Sum_probs=189.9
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC-ceeeeeeecccccEEEEE
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER-EAVDTQLIAHDKEVYDIA 92 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~ 92 (253)
.+.|.++..+ +.......+.-. +.+..++|++...+.+++++.||++++||... ..++..++.|+.+|.++.
T Consensus 39 ~L~ile~~~~-~gi~e~~s~d~~------D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svd 111 (311)
T KOG0277|consen 39 RLFILEVTDP-KGIQECQSYDTE------DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVD 111 (311)
T ss_pred eEEEEecCCC-CCeEEEEeeecc------cceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEec
Confidence 8888888644 223333333322 68999999988889999999999999999643 348888999999999999
Q ss_pred ec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeee
Q 035558 93 WG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVEL 170 (253)
Q Consensus 93 ~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~ 170 (253)
|+ .++.+++++-|++|++|+...++.+ ....+|+..|+..+|+|..++++++++.|+. +++||++...+.+ .+
T Consensus 112 wn~~~r~~~ltsSWD~TiKLW~~~r~~Sv---~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~-l~lwdvr~~gk~~-~i 186 (311)
T KOG0277|consen 112 WNTVRRRIFLTSSWDGTIKLWDPNRPNSV---QTFNGHNSCIYQAAFSPHIPNLFASASGDGT-LRLWDVRSPGKFM-SI 186 (311)
T ss_pred cccccceeEEeeccCCceEeecCCCCcce---EeecCCccEEEEEecCCCCCCeEEEccCCce-EEEEEecCCCcee-EE
Confidence 99 8888999999999999999887743 3356788899999999999999999999998 9999999887644 48
Q ss_pred cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE-EEEcCCcEE
Q 035558 171 QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV-AIAFSTKLQ 249 (253)
Q Consensus 171 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~ 249 (253)
..|...|.++.|+.-.++.|+||+.|+.|++||+++.+.|. ..+.+|+-.|..+.|||....++ +++.|-++|
T Consensus 187 ~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl------~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~r 260 (311)
T KOG0277|consen 187 EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPL------FELNGHGLAVRKVKFSPHHASLLASASYDMTVR 260 (311)
T ss_pred EeccceeEeecccccCCcEEEecCCCceEEEEehhhccccc------eeecCCceEEEEEecCcchhhHhhhccccceEE
Confidence 99999999999999877899999999999999999999776 67899999999999999876555 788999999
Q ss_pred EEEC
Q 035558 250 ILRV 253 (253)
Q Consensus 250 vw~l 253 (253)
||+.
T Consensus 261 iw~~ 264 (311)
T KOG0277|consen 261 IWDP 264 (311)
T ss_pred eccc
Confidence 9974
No 23
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.9e-35 Score=208.56 Aligned_cols=230 Identities=17% Similarity=0.253 Sum_probs=195.2
Q ss_pred CCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558 2 CQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT 79 (253)
Q Consensus 2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 79 (253)
| +|.+||+|+ | .|.+|++... .+....+++|+ ++|..+.|. .+++.+++++.|.+|+.||.++++.+.
T Consensus 57 P-~gs~~aSgG~Dr~I~LWnv~gd---ceN~~~lkgHs-----gAVM~l~~~-~d~s~i~S~gtDk~v~~wD~~tG~~~r 126 (338)
T KOG0265|consen 57 P-DGSCFASGGSDRAIVLWNVYGD---CENFWVLKGHS-----GAVMELHGM-RDGSHILSCGTDKTVRGWDAETGKRIR 126 (338)
T ss_pred C-CCCeEeecCCcceEEEEecccc---ccceeeecccc-----ceeEeeeec-cCCCEEEEecCCceEEEEecccceeee
Confidence 5 788899887 6 9999997553 25567788999 999999999 999999999999999999999999999
Q ss_pred eeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558 80 QLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV 157 (253)
Q Consensus 80 ~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~ 157 (253)
.+++|..-|+++.-+ ...++.+++.||++++||+|+....+.. ....+++++.|.. ++..+.+|+-|+. |++
T Consensus 127 k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~----~~kyqltAv~f~d-~s~qv~sggIdn~-ikv 200 (338)
T KOG0265|consen 127 KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF----ENKYQLTAVGFKD-TSDQVISGGIDND-IKV 200 (338)
T ss_pred hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc----ccceeEEEEEecc-cccceeeccccCc-eee
Confidence 999999999999977 6678889999999999999988754443 2233899999998 8899999999998 999
Q ss_pred EECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC----CCceeEEEEc
Q 035558 158 LDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA----GAEIEQLQWS 233 (253)
Q Consensus 158 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~ 233 (253)
||++.... ...+.+|..+|+.+..+|+| .++.+-+.|.++++||++...... .....+.+| ......++|+
T Consensus 201 Wd~r~~d~-~~~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~---R~v~if~g~~hnfeknlL~csws 275 (338)
T KOG0265|consen 201 WDLRKNDG-LYTLSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQ---RCVKIFQGHIHNFEKNLLKCSWS 275 (338)
T ss_pred eccccCcc-eEEeecccCceeeEEeccCC-CccccccccceEEEEEecccCCCC---ceEEEeecchhhhhhhcceeecc
Confidence 99998764 89999999999999999999 599999999999999998754222 111233333 3345778999
Q ss_pred CCCCceEEEEcCCcEEEEE
Q 035558 234 SSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 234 ~~~~~~~~~~~~~~i~vw~ 252 (253)
|++..+-+++.|..+.+|+
T Consensus 276 p~~~~i~ags~dr~vyvwd 294 (338)
T KOG0265|consen 276 PNGTKITAGSADRFVYVWD 294 (338)
T ss_pred CCCCccccccccceEEEee
Confidence 9999888999999999997
No 24
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.9e-35 Score=226.92 Aligned_cols=230 Identities=16% Similarity=0.230 Sum_probs=207.2
Q ss_pred CCCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 2 CQKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 2 p~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
|..+=+|++-.. .|.||+.++. ..++.+.... .||.+..|- .-.+++++|++|..|+||+..+++.+..
T Consensus 23 PtePw~la~LynG~V~IWnyetq----tmVksfeV~~-----~PvRa~kfi-aRknWiv~GsDD~~IrVfnynt~ekV~~ 92 (794)
T KOG0276|consen 23 PTEPWILAALYNGDVQIWNYETQ----TMVKSFEVSE-----VPVRAAKFI-ARKNWIVTGSDDMQIRVFNYNTGEKVKT 92 (794)
T ss_pred CCCceEEEeeecCeeEEEecccc----eeeeeeeecc-----cchhhheee-eccceEEEecCCceEEEEecccceeeEE
Confidence 556666777666 9999999997 8888888887 899999998 7889999999999999999999999999
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
+.+|.+-|++++.+ ...++++++.|-+|++||.+..-.. .....+|+.-|++++|+|.+.+.+|+++-|.+ |++|.
T Consensus 93 FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~--~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT-VKVWs 169 (794)
T KOG0276|consen 93 FEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWAC--EQTFEGHEHYVMQVAFNPKDPNTFASASLDRT-VKVWS 169 (794)
T ss_pred eeccccceeeeeecCCCCeEEecCCccEEEEeeccCceee--eeEEcCcceEEEEEEecCCCccceeeeecccc-EEEEE
Confidence 99999999999999 8889999999999999999876533 33445677799999999999999999999999 99999
Q ss_pred CCCCCCCeeeecccccceeEEEEecCCCC-eEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCc
Q 035558 160 IRFPTLPVVELQRHQASVNAIAWAPHSSC-HICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPD 238 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 238 (253)
+.++. |..++.+|...|++++|-+-|++ +|++|+.|.+|+|||.++..+.. .+.+|...|..+.|+|.-+.
T Consensus 170 lgs~~-~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~-------TLeGHt~Nvs~v~fhp~lpi 241 (794)
T KOG0276|consen 170 LGSPH-PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ-------TLEGHTNNVSFVFFHPELPI 241 (794)
T ss_pred cCCCC-CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH-------HhhcccccceEEEecCCCcE
Confidence 99865 68999999999999999885532 99999999999999999988765 88899999999999999999
Q ss_pred eEEEEcCCcEEEEE
Q 035558 239 WVAIAFSTKLQILR 252 (253)
Q Consensus 239 ~~~~~~~~~i~vw~ 252 (253)
+++++.||++|||+
T Consensus 242 iisgsEDGTvriWh 255 (794)
T KOG0276|consen 242 IISGSEDGTVRIWN 255 (794)
T ss_pred EEEecCCccEEEec
Confidence 99999999999996
No 25
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.4e-35 Score=213.90 Aligned_cols=227 Identities=19% Similarity=0.262 Sum_probs=203.2
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
.|.+|++++ | .+++||.+.. +++++.+.+|+ ..|.+++|- |.++++++++.|.+|+.|++.++.++.++
T Consensus 161 ~Gk~l~tcSsDl~~~LWd~~~~---~~c~ks~~gh~-----h~vS~V~f~-P~gd~ilS~srD~tik~We~~tg~cv~t~ 231 (406)
T KOG0295|consen 161 SGKYLATCSSDLSAKLWDFDTF---FRCIKSLIGHE-----HGVSSVFFL-PLGDHILSCSRDNTIKAWECDTGYCVKTF 231 (406)
T ss_pred CccEEEecCCccchhheeHHHH---HHHHHHhcCcc-----cceeeEEEE-ecCCeeeecccccceeEEecccceeEEec
Confidence 467888888 5 7999999873 57888899998 889999999 77899999999999999999999999999
Q ss_pred ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC--------------CCCEEE
Q 035558 82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ--------------DPRYMA 146 (253)
Q Consensus 82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------~~~~l~ 146 (253)
.+|...|..++.+ |+.++++++.|.++++|-+.++++...+ ..|+.+|-+++|-|. .+.++.
T Consensus 232 ~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~l---R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~ 308 (406)
T KOG0295|consen 232 PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAEL---REHEHPVECIAWAPESSYPSISEATGSTNGGQVLG 308 (406)
T ss_pred cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhh---hccccceEEEEecccccCcchhhccCCCCCccEEE
Confidence 9999999999999 9999999999999999999998644333 355668999998763 235899
Q ss_pred EEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCc
Q 035558 147 TIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAE 226 (253)
Q Consensus 147 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 226 (253)
+++.|+. |++||+.++. ++.++.+|...|..++|+|.| +||+++.+|+++++||+++.++.. ....|..-
T Consensus 309 s~SrDkt-Ik~wdv~tg~-cL~tL~ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~~~cmk-------~~~ah~hf 378 (406)
T KOG0295|consen 309 SGSRDKT-IKIWDVSTGM-CLFTLVGHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKNLQCMK-------TLEAHEHF 378 (406)
T ss_pred eecccce-EEEEeccCCe-EEEEEecccceeeeeEEcCCC-eEEEEEecCCcEEEEEeccceeee-------ccCCCcce
Confidence 9999998 9999999976 599999999999999999999 799999999999999999988765 66689999
Q ss_pred eeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 227 IEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 227 v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
++++.|+.+.+++++++-|..+++|+
T Consensus 379 vt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 379 VTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred eEEEecCCCCceEEeccccceeeeee
Confidence 99999999999999999999999997
No 26
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.5e-34 Score=229.31 Aligned_cols=230 Identities=20% Similarity=0.272 Sum_probs=193.7
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEec-cCceeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDI-EREAVDT 79 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~-~~~~~~~ 79 (253)
+++..+++++ + .+++|+.... .. .....+.+|. ..|.+++|+ +++.++++++.|++|++||+ ..+..++
T Consensus 169 ~~g~~l~~~~~~~~i~~~~~~~~-~~-~~~~~l~~h~-----~~v~~~~fs-~d~~~l~s~s~D~tiriwd~~~~~~~~~ 240 (456)
T KOG0266|consen 169 PDGRALAAASSDGLIRIWKLEGI-KS-NLLRELSGHT-----RGVSDVAFS-PDGSYLLSGSDDKTLRIWDLKDDGRNLK 240 (456)
T ss_pred CCCCeEEEccCCCcEEEeecccc-cc-hhhccccccc-----cceeeeEEC-CCCcEEEEecCCceEEEeeccCCCeEEE
Confidence 3556677765 5 9999999665 11 2666778888 899999999 89999999999999999999 5558999
Q ss_pred eeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558 80 QLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL 158 (253)
Q Consensus 80 ~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~ 158 (253)
++++|...|++++|+ .++++++|+.|++|++||+++++. ......|...|++++|++ ++++|++++.|+. |++|
T Consensus 241 ~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~---~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~-i~vw 315 (456)
T KOG0266|consen 241 TLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC---VRKLKGHSDGISGLAFSP-DGNLLVSASYDGT-IRVW 315 (456)
T ss_pred EecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE---EEeeeccCCceEEEEECC-CCCEEEEcCCCcc-EEEE
Confidence 999999999999999 889999999999999999999764 444457777999999999 9999999999998 9999
Q ss_pred ECCCCCC-Ceeeecccccc--eeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCC---ceeEEEE
Q 035558 159 DIRFPTL-PVVELQRHQAS--VNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGA---EIEQLQW 232 (253)
Q Consensus 159 d~~~~~~-~~~~~~~~~~~--i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~ 232 (253)
|+.++.. ++..+..+... +++++|+|++ .++++++.|+.+++||+.....+. ...+|.. .+.+...
T Consensus 316 d~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~~~~-------~~~~~~~~~~~~~~~~~ 387 (456)
T KOG0266|consen 316 DLETGSKLCLKLLSGAENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGKSVG-------TYTGHSNLVRCIFSPTL 387 (456)
T ss_pred ECCCCceeeeecccCCCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCccee-------eecccCCcceeEecccc
Confidence 9998763 24566655554 9999999999 699999999999999999887654 5555654 4455566
Q ss_pred cCCCCceEEEEcCCcEEEEEC
Q 035558 233 SSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 233 ~~~~~~~~~~~~~~~i~vw~l 253 (253)
++.++.+++++.|+.|.+|++
T Consensus 388 ~~~~~~i~sg~~d~~v~~~~~ 408 (456)
T KOG0266|consen 388 STGGKLIYSGSEDGSVYVWDS 408 (456)
T ss_pred cCCCCeEEEEeCCceEEEEeC
Confidence 888999999999999999985
No 27
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.3e-34 Score=212.24 Aligned_cols=223 Identities=21% Similarity=0.268 Sum_probs=201.0
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
..+++++|+ | +++|||+.++ ++..++.+|. ..|..++++ +-..++++++.|+.|+.||++..+.++.+
T Consensus 162 ~n~wf~tgs~DrtikIwDlatg----~LkltltGhi-----~~vr~vavS-~rHpYlFs~gedk~VKCwDLe~nkvIR~Y 231 (460)
T KOG0285|consen 162 GNEWFATGSADRTIKIWDLATG----QLKLTLTGHI-----ETVRGVAVS-KRHPYLFSAGEDKQVKCWDLEYNKVIRHY 231 (460)
T ss_pred CceeEEecCCCceeEEEEcccC----eEEEeecchh-----heeeeeeec-ccCceEEEecCCCeeEEEechhhhhHHHh
Confidence 367888988 5 9999999998 9999999999 899999999 77889999999999999999999999999
Q ss_pred ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558 82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160 (253)
Q Consensus 82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~ 160 (253)
.+|-..|.+++.+ .-+.|++|+.|.++++||+++... +....+|..+|.++.+.| ....+++|+.|+. |++||+
T Consensus 232 hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~---V~~l~GH~~~V~~V~~~~-~dpqvit~S~D~t-vrlWDl 306 (460)
T KOG0285|consen 232 HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS---VHVLSGHTNPVASVMCQP-TDPQVITGSHDST-VRLWDL 306 (460)
T ss_pred ccccceeEEEeccccceeEEecCCcceEEEeeecccce---EEEecCCCCcceeEEeec-CCCceEEecCCce-EEEeee
Confidence 9999999999999 889999999999999999999874 444567888999999999 6678999999999 999999
Q ss_pred CCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE
Q 035558 161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 240 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 240 (253)
+.++. ...+..|...+.+++.+|.. ..+++++.| .|+-|++..+.... .+.+|..-|++++...++ .++
T Consensus 307 ~agkt-~~tlt~hkksvral~lhP~e-~~fASas~d-nik~w~~p~g~f~~-------nlsgh~~iintl~~nsD~-v~~ 375 (460)
T KOG0285|consen 307 RAGKT-MITLTHHKKSVRALCLHPKE-NLFASASPD-NIKQWKLPEGEFLQ-------NLSGHNAIINTLSVNSDG-VLV 375 (460)
T ss_pred ccCce-eEeeecccceeeEEecCCch-hhhhccCCc-cceeccCCccchhh-------ccccccceeeeeeeccCc-eEE
Confidence 99775 88888999999999999997 588888876 58999999887554 577899999999999887 688
Q ss_pred EEEcCCcEEEEE
Q 035558 241 AIAFSTKLQILR 252 (253)
Q Consensus 241 ~~~~~~~i~vw~ 252 (253)
+++.++.+.+|+
T Consensus 376 ~G~dng~~~fwd 387 (460)
T KOG0285|consen 376 SGGDNGSIMFWD 387 (460)
T ss_pred EcCCceEEEEEe
Confidence 999999999997
No 28
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.1e-34 Score=231.05 Aligned_cols=223 Identities=19% Similarity=0.335 Sum_probs=191.3
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
|+.++|++++ | +||+|.+.+. .++..+++|. .||..+.|+ |.|-++|||+.|++.++|......+.+.
T Consensus 461 Pd~rfLlScSED~svRLWsl~t~----s~~V~y~GH~-----~PVwdV~F~-P~GyYFatas~D~tArLWs~d~~~PlRi 530 (707)
T KOG0263|consen 461 PDRRFLLSCSEDSSVRLWSLDTW----SCLVIYKGHL-----APVWDVQFA-PRGYYFATASHDQTARLWSTDHNKPLRI 530 (707)
T ss_pred ccccceeeccCCcceeeeecccc----eeEEEecCCC-----cceeeEEec-CCceEEEecCCCceeeeeecccCCchhh
Confidence 3455677776 5 9999999997 8899999999 999999999 8899999999999999999999999999
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
+.+|-+.|.|+.|+ +.+++++||.|.+|++||+.++...+++ .+|.++|.+++|+| .|.+|++|+.++. |++||
T Consensus 531 faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF---~GH~~~V~al~~Sp-~Gr~LaSg~ed~~-I~iWD 605 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF---TGHKGPVTALAFSP-CGRYLASGDEDGL-IKIWD 605 (707)
T ss_pred hcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe---cCCCCceEEEEEcC-CCceEeecccCCc-EEEEE
Confidence 99999999999999 9999999999999999999999855444 57888999999999 9999999999999 99999
Q ss_pred CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC-----------------CCCCCCeeecc
Q 035558 160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV-----------------EGGLDPILAYT 222 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----------------~~~~~~~~~~~ 222 (253)
+.++.. +..+.+|.+.|.++.|+.+| ..|++|+.|.+|++||+....... ........+..
T Consensus 606 l~~~~~-v~~l~~Ht~ti~SlsFS~dg-~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~t 683 (707)
T KOG0263|consen 606 LANGSL-VKQLKGHTGTIYSLSFSRDG-NVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYT 683 (707)
T ss_pred cCCCcc-hhhhhcccCceeEEEEecCC-CEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeee
Confidence 998764 89999999999999999999 699999999999999998654330 00011223344
Q ss_pred CCCceeEEEEcCCCCceEEEE
Q 035558 223 AGAEIEQLQWSSSQPDWVAIA 243 (253)
Q Consensus 223 ~~~~v~~~~~~~~~~~~~~~~ 243 (253)
...+|..+.|...+ .+++.|
T Consensus 684 K~tpv~~l~FtrrN-l~L~~g 703 (707)
T KOG0263|consen 684 KNTPVVGLHFTRRN-LLLAVG 703 (707)
T ss_pred cCceEEEEEEeccc-eeEEec
Confidence 56789999998776 444443
No 29
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.7e-34 Score=229.66 Aligned_cols=228 Identities=19% Similarity=0.317 Sum_probs=194.7
Q ss_pred CCCceEEeec-C-cEEEEEc-cCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558 3 QKPDLLATSS-D-FLRVWRI-SDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT 79 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 79 (253)
+++.++++++ | ++++||+ ..+ ..++++++|. ..|++++|+ +.++++++|+.|++|++||++++++..
T Consensus 213 ~d~~~l~s~s~D~tiriwd~~~~~----~~~~~l~gH~-----~~v~~~~f~-p~g~~i~Sgs~D~tvriWd~~~~~~~~ 282 (456)
T KOG0266|consen 213 PDGSYLLSGSDDKTLRIWDLKDDG----RNLKTLKGHS-----TYVTSVAFS-PDGNLLVSGSDDGTVRIWDVRTGECVR 282 (456)
T ss_pred CCCcEEEEecCCceEEEeeccCCC----eEEEEecCCC-----CceEEEEec-CCCCEEEEecCCCcEEEEeccCCeEEE
Confidence 4566888888 4 9999999 443 7889999999 899999999 677999999999999999999999999
Q ss_pred eeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCC--eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558 80 QLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEH--STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV 156 (253)
Q Consensus 80 ~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~ 156 (253)
.+.+|.+.|++++|+ ++++|++++.|+.|++||+.++.. ...+....... ++++++|+| ++.+++++..|+. ++
T Consensus 283 ~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp-~~~~ll~~~~d~~-~~ 359 (456)
T KOG0266|consen 283 KLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSP-NGKYLLSASLDRT-LK 359 (456)
T ss_pred eeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECC-CCcEEEEecCCCe-EE
Confidence 999999999999999 999999999999999999999983 33333333333 699999999 9999999999988 99
Q ss_pred EEECCCCCCCeeeecccccc---eeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC-CCceeEEEE
Q 035558 157 VLDIRFPTLPVVELQRHQAS---VNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA-GAEIEQLQW 232 (253)
Q Consensus 157 ~~d~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~ 232 (253)
+||++.... ...+.+|... +.+...++.+ .++++|+.|+.|++||+.++.... ...+| ...+..++|
T Consensus 360 ~w~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~~~~s~~~~~-------~l~~h~~~~~~~~~~ 430 (456)
T KOG0266|consen 360 LWDLRSGKS-VGTYTGHSNLVRCIFSPTLSTGG-KLIYSGSEDGSVYVWDSSSGGILQ-------RLEGHSKAAVSDLSS 430 (456)
T ss_pred EEEccCCcc-eeeecccCCcceeEecccccCCC-CeEEEEeCCceEEEEeCCccchhh-------hhcCCCCCceecccc
Confidence 999998764 6777777664 3444556777 699999999999999999876554 77788 899999999
Q ss_pred cCCCCceEEEE--cCCcEEEEE
Q 035558 233 SSSQPDWVAIA--FSTKLQILR 252 (253)
Q Consensus 233 ~~~~~~~~~~~--~~~~i~vw~ 252 (253)
+|....+++.+ .|+.+++|+
T Consensus 431 ~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 431 HPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred CCCcCeeeecCcCCCceEEEec
Confidence 99998777766 688899996
No 30
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.3e-35 Score=214.28 Aligned_cols=207 Identities=21% Similarity=0.254 Sum_probs=187.2
Q ss_pred ccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeC
Q 035558 26 RVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSA 104 (253)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~ 104 (253)
++++.+.+.+|. +-|.|+++. |...+|++|+.|++|+|||+.++++..++.+|...|..++++ ...++.+++.
T Consensus 140 pwKl~rVi~gHl-----gWVr~vavd-P~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ge 213 (460)
T KOG0285|consen 140 PWKLYRVISGHL-----GWVRSVAVD-PGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGE 213 (460)
T ss_pred cceehhhhhhcc-----ceEEEEeeC-CCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecC
Confidence 457778889999 999999999 778999999999999999999999999999999999999999 8889999999
Q ss_pred CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEec
Q 035558 105 DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAP 184 (253)
Q Consensus 105 dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~ 184 (253)
|+.|+.||++.++ .+....+|-+.|++++.+| .-+.|++|+.|.. +++||+|+.. .+..+.+|..+|.++.+.|
T Consensus 214 dk~VKCwDLe~nk---vIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst-~RvWDiRtr~-~V~~l~GH~~~V~~V~~~~ 287 (460)
T KOG0285|consen 214 DKQVKCWDLEYNK---VIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDST-IRVWDIRTRA-SVHVLSGHTNPVASVMCQP 287 (460)
T ss_pred CCeeEEEechhhh---hHHHhccccceeEEEeccc-cceeEEecCCcce-EEEeeecccc-eEEEecCCCCcceeEEeec
Confidence 9999999999987 6777788888999999999 8999999999998 9999999965 4999999999999999999
Q ss_pred CCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 185 HSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 185 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
-.+ .+++||.|++|++||++.++... .+..|...+.+++.+|... +++.+.-+.++-|++
T Consensus 288 ~dp-qvit~S~D~tvrlWDl~agkt~~-------tlt~hkksvral~lhP~e~-~fASas~dnik~w~~ 347 (460)
T KOG0285|consen 288 TDP-QVITGSHDSTVRLWDLRAGKTMI-------TLTHHKKSVRALCLHPKEN-LFASASPDNIKQWKL 347 (460)
T ss_pred CCC-ceEEecCCceEEEeeeccCceeE-------eeecccceeeEEecCCchh-hhhccCCccceeccC
Confidence 886 89999999999999999988654 7888999999999999986 455555556787764
No 31
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=3.5e-34 Score=211.12 Aligned_cols=227 Identities=22% Similarity=0.382 Sum_probs=195.9
Q ss_pred eEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC----------
Q 035558 7 LLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER---------- 74 (253)
Q Consensus 7 ~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~---------- 74 (253)
.+++++ | ++++|..+.++...+.....+||+ .+|-+++.. +++..+++|+.|.+|++|+.+.
T Consensus 161 ~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk-----~~V~sVsv~-~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s 234 (423)
T KOG0313|consen 161 LFVSASMDQTLRLWKWNVGENKVKALKVCRGHK-----RSVDSVSVD-SSGTRFCSGSWDTMLKIWSVETDEEDELESSS 234 (423)
T ss_pred eEEEecCCceEEEEEecCchhhhhHHhHhcccc-----cceeEEEec-CCCCeEEeecccceeeecccCCCccccccccc
Confidence 466666 6 999999988755556666677999 899999999 8999999999999999999332
Q ss_pred ---------------ceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeC
Q 035558 75 ---------------EAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNK 139 (253)
Q Consensus 75 ---------------~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~ 139 (253)
..++..+.+|..+|.++.|++...+++++.|.+|+.||+.++.....+.. ...+.++..+|
T Consensus 235 ~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~----~ksl~~i~~~~ 310 (423)
T KOG0313|consen 235 NRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT----NKSLNCISYSP 310 (423)
T ss_pred hhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec----CcceeEeeccc
Confidence 12455678999999999999888999999999999999999986555433 23899999999
Q ss_pred CCCCEEEEEEeCCCeEEEEECCCCC--CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCC
Q 035558 140 QDPRYMATIIMDSAKVVVLDIRFPT--LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDP 217 (253)
Q Consensus 140 ~~~~~l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 217 (253)
..++|++|+.|.. +++||.|++. ...+++.+|...|.++.|+|.....|++|+.|+++++||+++...|.
T Consensus 311 -~~~Ll~~gssdr~-irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~pl------ 382 (423)
T KOG0313|consen 311 -LSKLLASGSSDRH-IRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPL------ 382 (423)
T ss_pred -ccceeeecCCCCc-eeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcc------
Confidence 9999999999998 9999999875 34577889999999999999998899999999999999999988776
Q ss_pred eeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 218 ILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 218 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
..+.+|...|.++.|...+ .++++|.|+.++|++
T Consensus 383 ydI~~h~DKvl~vdW~~~~-~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 383 YDIAGHNDKVLSVDWNEGG-LIVSGGADNKLRIFK 416 (423)
T ss_pred eeeccCCceEEEEeccCCc-eEEeccCcceEEEec
Confidence 6888999999999998655 699999999999985
No 32
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=5.4e-35 Score=221.27 Aligned_cols=228 Identities=16% Similarity=0.327 Sum_probs=194.0
Q ss_pred CCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558 2 CQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT 79 (253)
Q Consensus 2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 79 (253)
|..+.+|++++ | .|+||++... ..+++++.+|. .+|.+++|+ ..+..+++++.|+.|++||+++|+++.
T Consensus 224 p~~~hLlLS~gmD~~vklW~vy~~---~~~lrtf~gH~-----k~Vrd~~~s-~~g~~fLS~sfD~~lKlwDtETG~~~~ 294 (503)
T KOG0282|consen 224 PKKGHLLLSGGMDGLVKLWNVYDD---RRCLRTFKGHR-----KPVRDASFN-NCGTSFLSASFDRFLKLWDTETGQVLS 294 (503)
T ss_pred cceeeEEEecCCCceEEEEEEecC---cceehhhhcch-----hhhhhhhcc-ccCCeeeeeecceeeeeeccccceEEE
Confidence 56788999988 6 9999999762 28999999999 899999999 899999999999999999999999999
Q ss_pred eeecccccEEEEEec-CC-CeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558 80 QLIAHDKEVYDIAWG-GV-GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV 157 (253)
Q Consensus 80 ~~~~~~~~v~~~~~~-~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~ 157 (253)
.+. ....++++.|+ ++ +.|++|+.|+.|+.||+++++ ++.....|-+.|..+.|-+ ++..+++++.++. +++
T Consensus 295 ~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k---vvqeYd~hLg~i~~i~F~~-~g~rFissSDdks-~ri 368 (503)
T KOG0282|consen 295 RFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK---VVQEYDRHLGAILDITFVD-EGRRFISSSDDKS-VRI 368 (503)
T ss_pred EEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH---HHHHHHhhhhheeeeEEcc-CCceEeeeccCcc-EEE
Confidence 887 35678999999 54 899999999999999999998 5566667778999999999 9999999999998 999
Q ss_pred EECCCCCC---------------------------------------------Ceeeecccc--cceeEEEEecCCCCeE
Q 035558 158 LDIRFPTL---------------------------------------------PVVELQRHQ--ASVNAIAWAPHSSCHI 190 (253)
Q Consensus 158 ~d~~~~~~---------------------------------------------~~~~~~~~~--~~i~~~~~~~~~~~~l 190 (253)
|+.+.+-. ..+.+.+|. +.-..+.|+||| .+|
T Consensus 369 We~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG-~~l 447 (503)
T KOG0282|consen 369 WENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG-RTL 447 (503)
T ss_pred EEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC-CeE
Confidence 99875421 111233443 345668999999 699
Q ss_pred EEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCc-eEEEEcCCcEEEEE
Q 035558 191 CTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPD-WVAIAFSTKLQILR 252 (253)
Q Consensus 191 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~i~vw~ 252 (253)
++|+.||.+.+||.++-+... .+..|..++..+.|+|..+. +++++-+|.|++|+
T Consensus 448 ~SGdsdG~v~~wdwkt~kl~~-------~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 448 CSGDSDGKVNFWDWKTTKLVS-------KLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EeecCCccEEEeechhhhhhh-------ccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999876544 77789999999999998654 56888999999996
No 33
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5.9e-33 Score=238.58 Aligned_cols=236 Identities=16% Similarity=0.269 Sum_probs=193.5
Q ss_pred CCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558 2 CQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT 79 (253)
Q Consensus 2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 79 (253)
|..+.+|++++ + .|++||+.++ +.+..+.+|. ..|++++|+|.++.+|++|+.||.|++||++++..+.
T Consensus 542 ~~~~~~las~~~Dg~v~lWd~~~~----~~~~~~~~H~-----~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 542 SYIKSQVASSNFEGVVQVWDVARS----QLVTEMKEHE-----KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG 612 (793)
T ss_pred cCCCCEEEEEeCCCeEEEEECCCC----eEEEEecCCC-----CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence 45567788887 5 9999999887 7788889998 8999999996688999999999999999999988888
Q ss_pred eeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558 80 QLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV 157 (253)
Q Consensus 80 ~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~ 157 (253)
.+..+ ..+.++.|+ ++.+|++|+.||.|++||+++.+.. +.....|...|.++.|. ++.++++++.|+. |++
T Consensus 613 ~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~--~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~-iki 686 (793)
T PLN00181 613 TIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP--LCTMIGHSKTVSYVRFV--DSSTLVSSSTDNT-LKL 686 (793)
T ss_pred EEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCcc--ceEecCCCCCEEEEEEe--CCCEEEEEECCCE-EEE
Confidence 77744 689999996 7899999999999999999876521 22234677799999996 5778999999998 999
Q ss_pred EECCCC-----CCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCC---CCCC---CeeeccCCCc
Q 035558 158 LDIRFP-----TLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVE---GGLD---PILAYTAGAE 226 (253)
Q Consensus 158 ~d~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~---~~~~~~~~~~ 226 (253)
||++.. ..++..+.+|...+..++|+|++ .+|++|+.|+.|++|+......... .... ......+...
T Consensus 687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 765 (793)
T PLN00181 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQF 765 (793)
T ss_pred EeCCCCccccCCcceEEEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcE
Confidence 999853 24577889999999999999998 6999999999999999865432110 0000 0112345678
Q ss_pred eeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 227 IEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 227 v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
|.+++|+|++..+++++.+|.|+||+|
T Consensus 766 V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 766 ISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999999999986
No 34
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.5e-34 Score=226.14 Aligned_cols=230 Identities=18% Similarity=0.243 Sum_probs=202.2
Q ss_pred CCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce-----
Q 035558 4 KPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA----- 76 (253)
Q Consensus 4 ~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----- 76 (253)
.|.+|++|+. ++++|.++++.....++....+|. ..|.+++++.....+|++++.|+++++|++...+
T Consensus 376 ~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~-----~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~ 450 (775)
T KOG0319|consen 376 SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHT-----NSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFP 450 (775)
T ss_pred cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccc-----cccceeeecccCccEEEEecCCceEEEecCCCccccccc
Confidence 5679999994 999999966544556777788898 8999999986667899999999999999997622
Q ss_pred e----eeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC
Q 035558 77 V----DTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMD 151 (253)
Q Consensus 77 ~----~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 151 (253)
. ......|...|++++.+ +..+++|||.|.+.++|++.+.. ......+|...+.++.|+| ..+.+++++.|
T Consensus 451 ~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~---l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD 526 (775)
T KOG0319|consen 451 IVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR---LLGVLSGHTRGVWCVSFSK-NDQLLATCSGD 526 (775)
T ss_pred ceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce---EEEEeeCCccceEEEEecc-ccceeEeccCC
Confidence 1 11234799999999999 99999999999999999999554 4455568888999999999 88999999999
Q ss_pred CCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEE
Q 035558 152 SAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQ 231 (253)
Q Consensus 152 ~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 231 (253)
.+ |+||.+.+.. +++++.+|...|..+.|-.++ ..|++++.||-|++|++.+..... .+..|..+|++++
T Consensus 527 ~T-vKIW~is~fS-ClkT~eGH~~aVlra~F~~~~-~qliS~~adGliKlWnikt~eC~~-------tlD~H~DrvWaL~ 596 (775)
T KOG0319|consen 527 KT-VKIWSISTFS-CLKTFEGHTSAVLRASFIRNG-KQLISAGADGLIKLWNIKTNECEM-------TLDAHNDRVWALS 596 (775)
T ss_pred ce-EEEEEeccce-eeeeecCccceeEeeeeeeCC-cEEEeccCCCcEEEEeccchhhhh-------hhhhccceeEEEe
Confidence 98 9999999876 699999999999999999999 699999999999999999988765 8889999999999
Q ss_pred EcCCCCceEEEEcCCcEEEEE
Q 035558 232 WSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 232 ~~~~~~~~~~~~~~~~i~vw~ 252 (253)
-+|....+++++.|+.+.+|+
T Consensus 597 ~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 597 VSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ecCccceeEecCCCeEEEEee
Confidence 999999889999999999996
No 35
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.9e-32 Score=235.46 Aligned_cols=236 Identities=18% Similarity=0.272 Sum_probs=190.7
Q ss_pred CCCceEEeec-C-cEEEEEccCCc----cccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce
Q 035558 3 QKPDLLATSS-D-FLRVWRISDED----RRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA 76 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 76 (253)
++++++|+|+ + .|+||++.... ........+.++ ..|.+++|+|..+.+|++++.||+|++||+.+++
T Consensus 493 ~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~------~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~ 566 (793)
T PLN00181 493 RDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASR------SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ 566 (793)
T ss_pred CCCCEEEEEeCCCEEEEEECCcccccccccccceEEeccc------CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe
Confidence 3677888887 5 99999976420 000112233332 5789999997778999999999999999999999
Q ss_pred eeeeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCe
Q 035558 77 VDTQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAK 154 (253)
Q Consensus 77 ~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~ 154 (253)
.+..+.+|...|++++|+ ++.+|++|+.||+|++||++++.....+. . ...+.++.|++.++.++++|+.|+.
T Consensus 567 ~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~---~-~~~v~~v~~~~~~g~~latgs~dg~- 641 (793)
T PLN00181 567 LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK---T-KANICCVQFPSESGRSLAFGSADHK- 641 (793)
T ss_pred EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe---c-CCCeEEEEEeCCCCCEEEEEeCCCe-
Confidence 999999999999999998 67899999999999999999887544432 2 2478999997768999999999998
Q ss_pred EEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcC
Q 035558 155 VVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS 234 (253)
Q Consensus 155 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 234 (253)
|++||+++...++..+.+|...|.++.|. ++ .+|++++.|++|++||++...... .......+.+|...+..++|+|
T Consensus 642 I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~-~~~~l~~~~gh~~~i~~v~~s~ 718 (793)
T PLN00181 642 VYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGI-NETPLHSFMGHTNVKNFVGLSV 718 (793)
T ss_pred EEEEECCCCCccceEecCCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCcccc-CCcceEEEcCCCCCeeEEEEcC
Confidence 99999998765677888999999999997 45 589999999999999998642110 0011245668999999999999
Q ss_pred CCCceEEEEcCCcEEEEE
Q 035558 235 SQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 235 ~~~~~~~~~~~~~i~vw~ 252 (253)
+++++++++.|+.+++|+
T Consensus 719 ~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 719 SDGYIATGSETNEVFVYH 736 (793)
T ss_pred CCCEEEEEeCCCEEEEEE
Confidence 999899999999999997
No 36
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-33 Score=213.73 Aligned_cols=224 Identities=17% Similarity=0.207 Sum_probs=192.5
Q ss_pred CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
+||.+||+|.+ .|+|||..+. ..++.+++|+ .+|..+.|+|.+...+++|++|+.+++||+.+......
T Consensus 78 ~DG~LlaaGD~sG~V~vfD~k~r----~iLR~~~ah~-----apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~ 148 (487)
T KOG0310|consen 78 SDGRLLAAGDESGHVKVFDMKSR----VILRQLYAHQ-----APVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAE 148 (487)
T ss_pred cCCeEEEccCCcCcEEEeccccH----HHHHHHhhcc-----CceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEE
Confidence 57999999986 9999997664 6788899999 99999999988889999999999999999998887668
Q ss_pred eecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558 81 LIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL 158 (253)
Q Consensus 81 ~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~ 158 (253)
+.+|++.|.+.+|+ ++..++||+.||+|++||++.... .+... .|..+|..+.+-| .+..|++++... +++|
T Consensus 149 l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~--~v~el-nhg~pVe~vl~lp-sgs~iasAgGn~--vkVW 222 (487)
T KOG0310|consen 149 LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS--RVVEL-NHGCPVESVLALP-SGSLIASAGGNS--VKVW 222 (487)
T ss_pred ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc--eeEEe-cCCCceeeEEEcC-CCCEEEEcCCCe--EEEE
Confidence 89999999999999 778999999999999999998852 22222 4556999999999 889999887554 9999
Q ss_pred ECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCc
Q 035558 159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPD 238 (253)
Q Consensus 159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 238 (253)
|+-++.+.+..+..|...|+|+++..++ +.|++|+-|+.+++||+.+.+. .......++|.+++.+|+++.
T Consensus 223 Dl~~G~qll~~~~~H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~~Kv--------v~s~~~~~pvLsiavs~dd~t 293 (487)
T KOG0310|consen 223 DLTTGGQLLTSMFNHNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTNYKV--------VHSWKYPGPVLSIAVSPDDQT 293 (487)
T ss_pred EecCCceehhhhhcccceEEEEEeecCC-ceEeecccccceEEEEccceEE--------EEeeecccceeeEEecCCCce
Confidence 9998776666777799999999999998 7999999999999999777552 344567899999999999988
Q ss_pred eEEEEcCCcEEE
Q 035558 239 WVAIAFSTKLQI 250 (253)
Q Consensus 239 ~~~~~~~~~i~v 250 (253)
++++..+|.+.+
T Consensus 294 ~viGmsnGlv~~ 305 (487)
T KOG0310|consen 294 VVIGMSNGLVSI 305 (487)
T ss_pred EEEecccceeee
Confidence 888888887654
No 37
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=223.95 Aligned_cols=227 Identities=16% Similarity=0.262 Sum_probs=194.9
Q ss_pred CceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce----ee
Q 035558 5 PDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA----VD 78 (253)
Q Consensus 5 ~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~ 78 (253)
.+.||.+++ .+|+|+..+. .+ ..+.+|+ ..|.++... .++.+|++|+.|.++++|.++.+. ++
T Consensus 336 ~~~laVATNs~~lr~y~~~~~----~c-~ii~GH~-----e~vlSL~~~-~~g~llat~sKD~svilWr~~~~~~~~~~~ 404 (775)
T KOG0319|consen 336 ESHLAVATNSPELRLYTLPTS----YC-QIIPGHT-----EAVLSLDVW-SSGDLLATGSKDKSVILWRLNNNCSKSLCV 404 (775)
T ss_pred cceEEEEeCCCceEEEecCCC----ce-EEEeCch-----hheeeeeec-ccCcEEEEecCCceEEEEEecCCcchhhhh
Confidence 346666665 9999998884 33 3899999 899999944 567899999999999999884432 55
Q ss_pred eeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCC--eeeee----ccCCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558 79 TQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEH--STIIY----ESSEPDTPLVRLGWNKQDPRYMATIIM 150 (253)
Q Consensus 79 ~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~----~~~~~~~~i~~~~~~~~~~~~l~~~~~ 150 (253)
....+|+..|.+++++ ...+|+++|.|+++++|++...+. ..... ....|...|++++.+| +..++|+|+.
T Consensus 405 a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~Sq 483 (775)
T KOG0319|consen 405 AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQ 483 (775)
T ss_pred hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEeccc
Confidence 5667999999999999 778999999999999999987332 11222 3346778999999999 9999999999
Q ss_pred CCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEE
Q 035558 151 DSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQL 230 (253)
Q Consensus 151 ~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~ 230 (253)
|.. .++|++.... ....+.+|...|.++.|+|.. +.++|+|.|++|+||.+.+.+... .+.+|...|..+
T Consensus 484 Dkt-aKiW~le~~~-l~~vLsGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fSClk-------T~eGH~~aVlra 553 (775)
T KOG0319|consen 484 DKT-AKIWDLEQLR-LLGVLSGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSISTFSCLK-------TFEGHTSAVLRA 553 (775)
T ss_pred ccc-eeeecccCce-EEEEeeCCccceEEEEecccc-ceeEeccCCceEEEEEeccceeee-------eecCccceeEee
Confidence 999 9999999654 488999999999999999998 799999999999999999998775 888999999999
Q ss_pred EEcCCCCceEEEEcCCcEEEEEC
Q 035558 231 QWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 231 ~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
+|-.+++.+++++.||.+++|++
T Consensus 554 ~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 554 SFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred eeeeCCcEEEeccCCCcEEEEec
Confidence 99999999999999999999985
No 38
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=5.5e-32 Score=217.82 Aligned_cols=231 Identities=21% Similarity=0.303 Sum_probs=175.9
Q ss_pred CceEEeecC-cEEEEEccCCcc---------ccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC
Q 035558 5 PDLLATSSD-FLRVWRISDEDR---------RVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER 74 (253)
Q Consensus 5 ~~~l~~~~~-~v~iw~~~~~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 74 (253)
..++++..+ ....|+...+.. .......+.+|. ++|++++|+|.++++|++|+.|++|++||+.+
T Consensus 33 ~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~-----~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~ 107 (493)
T PTZ00421 33 SNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQE-----GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPE 107 (493)
T ss_pred CCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCC-----CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCC
Confidence 444444445 667787654300 001112467787 89999999955889999999999999999976
Q ss_pred c-------eeeeeeecccccEEEEEec-C-CCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEE
Q 035558 75 E-------AVDTQLIAHDKEVYDIAWG-G-VGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYM 145 (253)
Q Consensus 75 ~-------~~~~~~~~~~~~v~~~~~~-~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 145 (253)
+ +.+..+.+|...|.+++|+ . +++|++++.|++|++||+++++.. .....|...|.+++|+| ++.+|
T Consensus 108 ~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~---~~l~~h~~~V~sla~sp-dG~lL 183 (493)
T PTZ00421 108 EGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAV---EVIKCHSDQITSLEWNL-DGSLL 183 (493)
T ss_pred CccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE---EEEcCCCCceEEEEEEC-CCCEE
Confidence 4 2456788999999999999 5 479999999999999999987633 33345667899999999 99999
Q ss_pred EEEEeCCCeEEEEECCCCCCCeeeecccccc-eeEEEEecCCCCeEEEec----CCCcEEEEeccCCCCCCCCCCCCeee
Q 035558 146 ATIIMDSAKVVVLDIRFPTLPVVELQRHQAS-VNAIAWAPHSSCHICTAG----DDSQALIWDLSSMGQPVEGGLDPILA 220 (253)
Q Consensus 146 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~ 220 (253)
++++.|+. |++||++++. .+..+.+|.+. ...+.|.+++. .+++++ .|+.|++||+++...+. ...
T Consensus 184 atgs~Dg~-IrIwD~rsg~-~v~tl~~H~~~~~~~~~w~~~~~-~ivt~G~s~s~Dr~VklWDlr~~~~p~------~~~ 254 (493)
T PTZ00421 184 CTTSKDKK-LNIIDPRDGT-IVSSVEAHASAKSQRCLWAKRKD-LIITLGCSKSQQRQIMLWDTRKMASPY------STV 254 (493)
T ss_pred EEecCCCE-EEEEECCCCc-EEEEEecCCCCcceEEEEcCCCC-eEEEEecCCCCCCeEEEEeCCCCCCce------eEe
Confidence 99999998 9999999866 47778888764 45678999874 555543 58999999999876543 111
Q ss_pred -ccCCCceeEEEEcCCCCceEEEE-cCCcEEEEEC
Q 035558 221 -YTAGAEIEQLQWSSSQPDWVAIA-FSTKLQILRV 253 (253)
Q Consensus 221 -~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~vw~l 253 (253)
..+...+....|++++..+++++ .|+.|++|++
T Consensus 255 ~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 255 DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 23345566778999998777776 5999999985
No 39
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-33 Score=227.78 Aligned_cols=231 Identities=14% Similarity=0.244 Sum_probs=201.4
Q ss_pred CCCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 2 CQKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 2 p~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
|..+=+|++--. .|++||..-+ .++..+..|. ++|..++|+ |...++++|++|-.|+||+..+.+++.+
T Consensus 19 P~rPwILtslHsG~IQlWDYRM~----tli~rFdeHd-----GpVRgv~FH-~~qplFVSGGDDykIkVWnYk~rrclft 88 (1202)
T KOG0292|consen 19 PKRPWILTSLHSGVIQLWDYRMG----TLIDRFDEHD-----GPVRGVDFH-PTQPLFVSGGDDYKIKVWNYKTRRCLFT 88 (1202)
T ss_pred CCCCEEEEeecCceeeeehhhhh----hHHhhhhccC-----Cccceeeec-CCCCeEEecCCccEEEEEecccceehhh
Confidence 444434444334 9999999998 8999999999 999999999 8899999999999999999999999999
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
+.+|-+.|..+.|+ .-..++++|.|.+|+||+..+.+++..+ .+|...|+|..|+| ...++++++-|.+ |++||
T Consensus 89 L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl---tGHnHYVMcAqFhp-tEDlIVSaSLDQT-VRVWD 163 (1202)
T KOG0292|consen 89 LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL---TGHNHYVMCAQFHP-TEDLIVSASLDQT-VRVWD 163 (1202)
T ss_pred hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE---ecCceEEEeeccCC-ccceEEEecccce-EEEEe
Confidence 99999999999999 8889999999999999999999865554 46666999999999 8999999999998 99999
Q ss_pred CCCCCC----------------------------CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC
Q 035558 160 IRFPTL----------------------------PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV 211 (253)
Q Consensus 160 ~~~~~~----------------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 211 (253)
+...++ ..+.+.+|...|+-++|+|.-+ ++++|+.|..|++|.+...+.
T Consensus 164 isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKa-- 240 (1202)
T KOG0292|consen 164 ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKA-- 240 (1202)
T ss_pred ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccc--
Confidence 853211 1234678999999999999986 999999999999999876552
Q ss_pred CCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 212 EGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 212 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
++.-...+|.+.|.++-|+|....+++.+.|+.++||+|
T Consensus 241 ---WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 241 ---WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred ---eeehhhhcccCCcceEEecCccceeEecCCCccEEEEec
Confidence 234577899999999999999888999999999999996
No 40
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.2e-32 Score=193.53 Aligned_cols=232 Identities=17% Similarity=0.310 Sum_probs=191.3
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc---ee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE---AV 77 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~ 77 (253)
|.|++||+++ | ++.||.-.. ..++++.+++||+ ..|.+++|+ +++++||+++.|..|-||.+..+ ++
T Consensus 71 p~g~~La~aSFD~t~~Iw~k~~--~efecv~~lEGHE-----nEVK~Vaws-~sG~~LATCSRDKSVWiWe~deddEfec 142 (312)
T KOG0645|consen 71 PHGRYLASASFDATVVIWKKED--GEFECVATLEGHE-----NEVKCVAWS-ASGNYLATCSRDKSVWIWEIDEDDEFEC 142 (312)
T ss_pred CCCcEEEEeeccceEEEeecCC--CceeEEeeeeccc-----cceeEEEEc-CCCCEEEEeeCCCeEEEEEecCCCcEEE
Confidence 5677999999 7 999998775 6788999999999 899999999 99999999999999999998744 37
Q ss_pred eeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558 78 DTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV 156 (253)
Q Consensus 78 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~ 156 (253)
...++.|...|..+.|+ ...+|++++.|.+|++|+-.............+++..|.+++|+| .|..|++++.|+. ++
T Consensus 143 ~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~t-v~ 220 (312)
T KOG0645|consen 143 IAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGT-VS 220 (312)
T ss_pred EeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcc-eE
Confidence 77889999999999999 889999999999999998875554555666677777999999999 8999999999998 99
Q ss_pred EEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCC-CCCCCCCCCCeeeccCCCceeEEEEcCC
Q 035558 157 VLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM-GQPVEGGLDPILAYTAGAEIEQLQWSSS 235 (253)
Q Consensus 157 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 235 (253)
||-....- -..|..+++.+.|. ++ .|++++.|+.|++|.-... ..|. ..........|...|++++|.|.
T Consensus 221 Iw~~~~~~-----~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~d~p~-~~l~~~~~~aHe~dVNsV~w~p~ 291 (312)
T KOG0645|consen 221 IWRLYTDL-----SGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESDSPDEPS-WNLLAKKEGAHEVDVNSVQWNPK 291 (312)
T ss_pred eeeeccCc-----chhcccceEeeeec-cc--ceEeccCCCEEEEEEecCCCCCch-HHHHHhhhcccccccceEEEcCC
Confidence 99876321 12367889999999 55 8999999999999977642 1111 00001133468889999999994
Q ss_pred -CCceEEEEcCCcEEEEEC
Q 035558 236 -QPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 236 -~~~~~~~~~~~~i~vw~l 253 (253)
...+++++.||.+++|++
T Consensus 292 ~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 292 VSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred CCCceeecCCCceEEEEEe
Confidence 456889999999999985
No 41
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.5e-33 Score=193.58 Aligned_cols=224 Identities=17% Similarity=0.173 Sum_probs=189.3
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
+|++..+++ + +|++|+...+ .+++++.+|. ..|..++.+ .+...+++|+.|..+.+||+++++..+.+
T Consensus 28 dGnY~ltcGsdrtvrLWNp~rg----~liktYsghG-----~EVlD~~~s-~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~ 97 (307)
T KOG0316|consen 28 DGNYCLTCGSDRTVRLWNPLRG----ALIKTYSGHG-----HEVLDAALS-SDNSKFASCGGDKAVQVWDVNTGKVDRRF 97 (307)
T ss_pred CCCEEEEcCCCceEEeeccccc----ceeeeecCCC-----ceeeecccc-ccccccccCCCCceEEEEEcccCeeeeec
Confidence 567777766 5 9999999988 9999999999 889999998 88999999999999999999999999999
Q ss_pred ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558 82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160 (253)
Q Consensus 82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~ 160 (253)
++|.+.|+.++|+ +...+++|+.|.++++||.++... .++.........|.++.. .+..|++|+.||+ ++.||+
T Consensus 98 rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~-ePiQildea~D~V~Si~v---~~heIvaGS~DGt-vRtydi 172 (307)
T KOG0316|consen 98 RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF-EPIQILDEAKDGVSSIDV---AEHEIVAGSVDGT-VRTYDI 172 (307)
T ss_pred ccccceeeEEEecCcceEEEeccccceeEEEEcccCCC-CccchhhhhcCceeEEEe---cccEEEeeccCCc-EEEEEe
Confidence 9999999999999 999999999999999999998753 233333344458888888 4578999999999 999999
Q ss_pred CCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCce--eEEEEcCCCCc
Q 035558 161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEI--EQLQWSSSQPD 238 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~ 238 (253)
|.+.. ..... ..+|+++.|++++ +..+.++.|+++++.|-.+++... ...+|.+.= ...+++.....
T Consensus 173 R~G~l-~sDy~--g~pit~vs~s~d~-nc~La~~l~stlrLlDk~tGklL~-------sYkGhkn~eykldc~l~qsdth 241 (307)
T KOG0316|consen 173 RKGTL-SSDYF--GHPITSVSFSKDG-NCSLASSLDSTLRLLDKETGKLLK-------SYKGHKNMEYKLDCCLNQSDTH 241 (307)
T ss_pred eccee-ehhhc--CCcceeEEecCCC-CEEEEeeccceeeecccchhHHHH-------Hhcccccceeeeeeeeccccee
Confidence 98764 22233 4689999999999 699999999999999999988654 566775543 44567777778
Q ss_pred eEEEEcCCcEEEEEC
Q 035558 239 WVAIAFSTKLQILRV 253 (253)
Q Consensus 239 ~~~~~~~~~i~vw~l 253 (253)
+++++.||.+.+|+|
T Consensus 242 V~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 242 VFSGSEDGKVYFWDL 256 (307)
T ss_pred EEeccCCceEEEEEe
Confidence 889999999999986
No 42
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-32 Score=194.35 Aligned_cols=236 Identities=17% Similarity=0.226 Sum_probs=199.9
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
.+|++|.+++ | +..+|--.++ +.+.++.+|. +.|.|+..+ .+.+.+++|+.|.++++||+++|+++..
T Consensus 20 ~eGDLlFscaKD~~~~vw~s~nG----erlGty~GHt-----GavW~~Did-~~s~~liTGSAD~t~kLWDv~tGk~la~ 89 (327)
T KOG0643|consen 20 REGDLLFSCAKDSTPTVWYSLNG----ERLGTYDGHT-----GAVWCCDID-WDSKHLITGSADQTAKLWDVETGKQLAT 89 (327)
T ss_pred CCCcEEEEecCCCCceEEEecCC----ceeeeecCCC-----ceEEEEEec-CCcceeeeccccceeEEEEcCCCcEEEE
Confidence 3788999998 4 9999988777 8999999999 999999998 8899999999999999999999999998
Q ss_pred eecccccEEEEEec-CCCeEEEEeC-----CCcEEEEEcCCCC----CeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSA-----DGSVRVFDLRDKE----HSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM 150 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~-----dg~i~i~d~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 150 (253)
++ ...+|..+.|+ ++++++.+.. .+.|.++|++... ...++.....+++.++.+-|.| -+..|++|..
T Consensus 90 ~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~-l~~~ii~Ghe 167 (327)
T KOG0643|consen 90 WK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP-LGETIIAGHE 167 (327)
T ss_pred ee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc-cCCEEEEecC
Confidence 87 57799999999 8888777654 4679999998432 1223344445567999999999 8999999999
Q ss_pred CCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC--------CC---------
Q 035558 151 DSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV--------EG--------- 213 (253)
Q Consensus 151 ~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--------~~--------- 213 (253)
+|. |..||++++.+.+.....|...|+.|+++|+. .++++++.|.+-++||+++.+... ..
T Consensus 168 ~G~-is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~ 245 (327)
T KOG0643|consen 168 DGS-ISIYDARTGKELVDSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDH 245 (327)
T ss_pred CCc-EEEEEcccCceeeechhhhccccccccccCCc-ceEEecccCccceeeeccceeeEEEeeecccccceecccccce
Confidence 999 99999999887788888899999999999999 699999999999999998765211 00
Q ss_pred -------------------------------CCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 214 -------------------------------GLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 214 -------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
.++.....+|-++|++++|||+|+.+.+++.||.||+..
T Consensus 246 VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 246 VILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHH 315 (327)
T ss_pred EEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEE
Confidence 022334568999999999999999999999999999864
No 43
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=8.7e-32 Score=197.59 Aligned_cols=228 Identities=16% Similarity=0.229 Sum_probs=196.8
Q ss_pred CCCCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558 1 ECQKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD 78 (253)
Q Consensus 1 sp~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 78 (253)
+| +.+++++|++ ...+|++.++ .....+.+|+ ..|+++.|+ .++.+||+|+.+|.|+||+..++...
T Consensus 73 ~P-~~~l~aTGGgDD~AflW~~~~g----e~~~eltgHK-----DSVt~~~Fs-hdgtlLATGdmsG~v~v~~~stg~~~ 141 (399)
T KOG0296|consen 73 HP-NNNLVATGGGDDLAFLWDISTG----EFAGELTGHK-----DSVTCCSFS-HDGTLLATGDMSGKVLVFKVSTGGEQ 141 (399)
T ss_pred CC-CCceEEecCCCceEEEEEccCC----cceeEecCCC-----CceEEEEEc-cCceEEEecCCCccEEEEEcccCceE
Confidence 36 8889999884 9999999998 7888999999 999999999 99999999999999999999999888
Q ss_pred eeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558 79 TQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV 157 (253)
Q Consensus 79 ~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~ 157 (253)
..+...-..|.=|.|+ .+..|+.|+.||.+.+|.+.++... ....+|..++++=.|.| +|+.++++..|+. |++
T Consensus 142 ~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~---kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgt-i~~ 216 (399)
T KOG0296|consen 142 WKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALC---KVMSGHNSPCTCGEFIP-DGKRILTGYDDGT-IIV 216 (399)
T ss_pred EEeecccCceEEEEecccccEEEeecCCCcEEEEECCCccee---eEecCCCCCcccccccC-CCceEEEEecCce-EEE
Confidence 8776556778888999 9999999999999999999986433 33346778999999999 8999999999998 999
Q ss_pred EECCCCCC------------------------------------------------------------------------
Q 035558 158 LDIRFPTL------------------------------------------------------------------------ 165 (253)
Q Consensus 158 ~d~~~~~~------------------------------------------------------------------------ 165 (253)
||..+...
T Consensus 217 Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss 296 (399)
T KOG0296|consen 217 WNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSS 296 (399)
T ss_pred EecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccc
Confidence 99976532
Q ss_pred ----------------------CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC
Q 035558 166 ----------------------PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA 223 (253)
Q Consensus 166 ----------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 223 (253)
.++..-.|..+|..+.|.+ . .+|++++.+|.|+.||.++++... ...+|
T Consensus 297 ~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t-~~l~t~c~~g~v~~wDaRtG~l~~-------~y~GH 367 (399)
T KOG0296|consen 297 KLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-T-DYLLTACANGKVRQWDARTGQLKF-------TYTGH 367 (399)
T ss_pred ccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-c-chheeeccCceEEeeeccccceEE-------EEecC
Confidence 1112224677888899988 4 489999999999999999988665 88899
Q ss_pred CCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 224 GAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 224 ~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
...|.+++.+|+.+.+++++.|+..+||++
T Consensus 368 ~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 368 QMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred chheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 999999999999999999999999999975
No 44
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.7e-32 Score=203.78 Aligned_cols=225 Identities=20% Similarity=0.369 Sum_probs=195.4
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
.|.+|++++ | ++.+||..++ ...+.+.-|. .+-..+.|- +...+++.+.|+.|+|+.+...+++.++
T Consensus 287 ~G~yilS~~vD~ttilwd~~~g----~~~q~f~~~s-----~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P~~t~ 355 (524)
T KOG0273|consen 287 KGTYILSGGVDGTTILWDAHTG----TVKQQFEFHS-----APALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRPVKTF 355 (524)
T ss_pred CCCEEEeccCCccEEEEeccCc----eEEEeeeecc-----CCccceEEe--cCceEeecCCCceEEEEEecCCCcceee
Confidence 577888888 6 9999999887 7888888887 666789995 5667899999999999999989999999
Q ss_pred ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC--------CCCEEEEEEeCC
Q 035558 82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ--------DPRYMATIIMDS 152 (253)
Q Consensus 82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~l~~~~~~~ 152 (253)
.+|.++|.+|.|+ .+.+|++++.|++++||.+..... ......|...|+.+.|+|. .+..+++++.|+
T Consensus 356 ~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~---~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds 432 (524)
T KOG0273|consen 356 IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS---VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS 432 (524)
T ss_pred ecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc---hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC
Confidence 9999999999999 999999999999999999887763 3344566668888888773 456789999999
Q ss_pred CeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEE
Q 035558 153 AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQW 232 (253)
Q Consensus 153 ~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 232 (253)
. |++||+..+. ++..+..|..+|++++|+|++ +++++|+.||.|.+|+++.++. .......+.|..++|
T Consensus 433 t-V~lwdv~~gv-~i~~f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~~~l--------~~s~~~~~~Ifel~W 501 (524)
T KOG0273|consen 433 T-VKLWDVESGV-PIHTLMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKTGKL--------VKSYQGTGGIFELCW 501 (524)
T ss_pred e-EEEEEccCCc-eeEeeccCCCceEEEEecCCC-cEEEecCCCCeeEeccccchhe--------eEeecCCCeEEEEEE
Confidence 8 9999999866 699999999999999999999 6999999999999999998763 344556778999999
Q ss_pred cCCCCceEEEEcCCcEEEEEC
Q 035558 233 SSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 233 ~~~~~~~~~~~~~~~i~vw~l 253 (253)
+.+|..+.++..|+.+++.++
T Consensus 502 n~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 502 NAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred cCCCCEEEEEecCCCceEEEe
Confidence 999998889999999998875
No 45
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.5e-31 Score=202.70 Aligned_cols=225 Identities=21% Similarity=0.360 Sum_probs=190.5
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
+++++++++ + .|++|++..+ +....+..|. ..|.++.|+ +++.++++++.+|.|++||+++++....+
T Consensus 62 ~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~~~~-----~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 131 (289)
T cd00200 62 DGTYLASGSSDKTIRLWDLETG----ECVRTLTGHT-----SYVSSVAFS-PDGRILSSSSRDKTIKVWDVETGKCLTTL 131 (289)
T ss_pred CCCEEEEEcCCCeEEEEEcCcc----cceEEEeccC-----CcEEEEEEc-CCCCEEEEecCCCeEEEEECCCcEEEEEe
Confidence 345666666 5 9999999886 6677777887 789999999 66888888888999999999988888888
Q ss_pred ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558 82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160 (253)
Q Consensus 82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~ 160 (253)
..|...+.+++|+ ++.++++++.|+.|++||+++.+....+. .+...+.++.|+| +++.+++++.++. +++||+
T Consensus 132 ~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~-~~~~l~~~~~~~~-i~i~d~ 206 (289)
T cd00200 132 RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT---GHTGEVNSVAFSP-DGEKLLSSSSDGT-IKLWDL 206 (289)
T ss_pred ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe---cCccccceEEECC-CcCEEEEecCCCc-EEEEEC
Confidence 8899999999999 88888888889999999999776444333 4555899999999 8888888888888 999999
Q ss_pred CCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE
Q 035558 161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 240 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 240 (253)
+... .+..+..|...+.+++|+|++ .++++++.||.|++||+.+..... ....|...|.+++|+|+++.++
T Consensus 207 ~~~~-~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~l~ 277 (289)
T cd00200 207 STGK-CLGTLRGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGECVQ-------TLSGHTNSVTSLAWSPDGKRLA 277 (289)
T ss_pred CCCc-eecchhhcCCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCceeEE-------EccccCCcEEEEEECCCCCEEE
Confidence 8755 367777888899999999997 688888889999999998755332 4457888999999999998899
Q ss_pred EEEcCCcEEEEE
Q 035558 241 AIAFSTKLQILR 252 (253)
Q Consensus 241 ~~~~~~~i~vw~ 252 (253)
+++.|+.+++|+
T Consensus 278 ~~~~d~~i~iw~ 289 (289)
T cd00200 278 SGSADGTIRIWD 289 (289)
T ss_pred EecCCCeEEecC
Confidence 999999999996
No 46
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-31 Score=204.98 Aligned_cols=233 Identities=18% Similarity=0.236 Sum_probs=188.5
Q ss_pred CCCCCceEEeec-C-cEEEEEccCCccccceeeeec---CCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc
Q 035558 1 ECQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLN---GNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE 75 (253)
Q Consensus 1 sp~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 75 (253)
||+ |.++++++ | ++.+||=.++ +.+..+. +|+ +.|.+++|+ |++..+++++.|.+++|||+.+.
T Consensus 199 sPD-G~~Fat~gsDgki~iyDGktg----e~vg~l~~~~aHk-----GsIfalsWs-PDs~~~~T~SaDkt~KIWdVs~~ 267 (603)
T KOG0318|consen 199 SPD-GSRFATAGSDGKIYIYDGKTG----EKVGELEDSDAHK-----GSIFALSWS-PDSTQFLTVSADKTIKIWDVSTN 267 (603)
T ss_pred CCC-CCeEEEecCCccEEEEcCCCc----cEEEEecCCCCcc-----ccEEEEEEC-CCCceEEEecCCceEEEEEeecc
Confidence 355 66666655 7 9999999888 7777777 777 999999999 89999999999999999999874
Q ss_pred ee-------------------------------------------eeeeecccccEEEEEec-CCCeEEEEeCCCcEEEE
Q 035558 76 AV-------------------------------------------DTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVF 111 (253)
Q Consensus 76 ~~-------------------------------------------~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~ 111 (253)
++ ...+.+|...|+++..+ ++.+|++|+.||.|.-|
T Consensus 268 slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W 347 (603)
T KOG0318|consen 268 SLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSW 347 (603)
T ss_pred ceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEE
Confidence 32 23356899999999999 99999999999999999
Q ss_pred EcCCCCCeeee-----------eccC------------------------C-----------------------------
Q 035558 112 DLRDKEHSTII-----------YESS------------------------E----------------------------- 127 (253)
Q Consensus 112 d~~~~~~~~~~-----------~~~~------------------------~----------------------------- 127 (253)
|..++..-+.. .... .
T Consensus 348 ~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~ 427 (603)
T KOG0318|consen 348 DSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISD 427 (603)
T ss_pred ecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCc
Confidence 98765311000 0000 0
Q ss_pred --------------CCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC-CCeeeecccccceeEEEEecCCCCeEEE
Q 035558 128 --------------PDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT-LPVVELQRHQASVNAIAWAPHSSCHICT 192 (253)
Q Consensus 128 --------------~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 192 (253)
..-...+++++| +++.+++|+.|+. |++|.+.... .....+..|.++|+.++|+|++ .+|++
T Consensus 428 iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgk-vhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~-~yla~ 504 (603)
T KOG0318|consen 428 IVLLQDQTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGK-VHVYSLSGDELKEEAKLLEHRAAITDVAYSPDG-AYLAA 504 (603)
T ss_pred EEEEecCCcceeeccccccceEEEcC-CCCEEEEecccce-EEEEEecCCcccceeeeecccCCceEEEECCCC-cEEEE
Confidence 011345678888 9999999999999 9999998755 3345667799999999999999 69999
Q ss_pred ecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 193 AGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 193 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
+...+.+.+||+.+.+... ....-|..+|.+++|+|+..++++++.|..|.||+|
T Consensus 505 ~Da~rkvv~yd~~s~~~~~------~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 505 GDASRKVVLYDVASREVKT------NRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred eccCCcEEEEEcccCceec------ceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEc
Confidence 9999999999999877432 233349999999999999998889999999999986
No 47
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-32 Score=208.75 Aligned_cols=230 Identities=19% Similarity=0.259 Sum_probs=199.3
Q ss_pred CCCCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558 1 ECQKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT 79 (253)
Q Consensus 1 sp~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 79 (253)
||+.+.-+|+++. .+.+|+..+. ...+++...+ ..+.+++|. .+|.++++|+..|.|+|+|..+...+.
T Consensus 35 sp~~P~d~aVt~S~rvqly~~~~~----~~~k~~srFk-----~~v~s~~fR-~DG~LlaaGD~sG~V~vfD~k~r~iLR 104 (487)
T KOG0310|consen 35 SPKHPYDFAVTSSVRVQLYSSVTR----SVRKTFSRFK-----DVVYSVDFR-SDGRLLAAGDESGHVKVFDMKSRVILR 104 (487)
T ss_pred CCCCCCceEEecccEEEEEecchh----hhhhhHHhhc-----cceeEEEee-cCCeEEEccCCcCcEEEeccccHHHHH
Confidence 5777877777777 9999999886 5566565555 789999999 999999999999999999977766788
Q ss_pred eeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558 80 QLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV 157 (253)
Q Consensus 80 ~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~ 157 (253)
.+.+|+.++..+.|+ ++..|++|+.|+.+++||+.+.. ......+|+..|.+.+|+|.++..+++|++||. |++
T Consensus 105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~---v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~-vrl 180 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY---VQAELSGHTDYVRCGDISPANDHIVVTGSYDGK-VRL 180 (487)
T ss_pred HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE---EEEEecCCcceeEeeccccCCCeEEEecCCCce-EEE
Confidence 899999999999999 88899999999999999999887 355667888899999999988889999999999 999
Q ss_pred EECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC
Q 035558 158 LDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP 237 (253)
Q Consensus 158 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 237 (253)
||++.....+.++. |..+|..+.+-|.| ..+++++ ...++|||+.++.+.. .....|...|+++.+..++.
T Consensus 181 ~DtR~~~~~v~eln-hg~pVe~vl~lpsg-s~iasAg-Gn~vkVWDl~~G~qll------~~~~~H~KtVTcL~l~s~~~ 251 (487)
T KOG0310|consen 181 WDTRSLTSRVVELN-HGCPVESVLALPSG-SLIASAG-GNSVKVWDLTTGGQLL------TSMFNHNKTVTCLRLASDST 251 (487)
T ss_pred EEeccCCceeEEec-CCCceeeEEEcCCC-CEEEEcC-CCeEEEEEecCCceeh------hhhhcccceEEEEEeecCCc
Confidence 99998765455554 89999999999998 5888877 5689999999777554 35556999999999999999
Q ss_pred ceEEEEcCCcEEEEEC
Q 035558 238 DWVAIAFSTKLQILRV 253 (253)
Q Consensus 238 ~~~~~~~~~~i~vw~l 253 (253)
.|++++-|+.+++|++
T Consensus 252 rLlS~sLD~~VKVfd~ 267 (487)
T KOG0310|consen 252 RLLSGSLDRHVKVFDT 267 (487)
T ss_pred eEeecccccceEEEEc
Confidence 9999999999999973
No 48
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-32 Score=189.11 Aligned_cols=237 Identities=20% Similarity=0.298 Sum_probs=191.6
Q ss_pred CceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEec-CCCCCEEEEEeCCCeEEEEeccCce--eee
Q 035558 5 PDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWN-EAEPRRIGTSSIDTTCTIWDIEREA--VDT 79 (253)
Q Consensus 5 ~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~vwd~~~~~--~~~ 79 (253)
|..|||++ | +|+|+....+ .+.+++.++.+|. +||..++|. |.-|.+||+++.||.|.||.-+.++ ...
T Consensus 23 gkrlATcsSD~tVkIf~v~~n-~~s~ll~~L~Gh~-----GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~ 96 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNN-GQSKLLAELTGHS-----GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAY 96 (299)
T ss_pred cceeeeecCCccEEEEEEcCC-CCceeeeEecCCC-----CCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhh
Confidence 56788876 6 9999999886 5568899999999 999999995 4579999999999999999998885 344
Q ss_pred eeecccccEEEEEec---CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC--C-----------C
Q 035558 80 QLIAHDKEVYDIAWG---GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD--P-----------R 143 (253)
Q Consensus 80 ~~~~~~~~v~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~-----------~ 143 (253)
....|...|++++|. -+-.|++++.||.|.+.+.+.............|+-.|++++|.|.. + +
T Consensus 97 e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~k 176 (299)
T KOG1332|consen 97 EHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVK 176 (299)
T ss_pred hhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccc
Confidence 556899999999998 56789999999999999998773333333445677799999999842 2 4
Q ss_pred EEEEEEeCCCeEEEEECCCCC-CCeeeecccccceeEEEEecCC---CCeEEEecCCCcEEEEeccCCCCCCCCCCCCee
Q 035558 144 YMATIIMDSAKVVVLDIRFPT-LPVVELQRHQASVNAIAWAPHS---SCHICTAGDDSQALIWDLSSMGQPVEGGLDPIL 219 (253)
Q Consensus 144 ~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 219 (253)
.|++|+.|.. |+||+..... .....+.+|.+.|..++|.|.- ..+++++++||++.||-.+....+ .....
T Consensus 177 rlvSgGcDn~-VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~----wk~tl 251 (299)
T KOG1332|consen 177 RLVSGGCDNL-VKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP----WKKTL 251 (299)
T ss_pred eeeccCCccc-eeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc----ccccc
Confidence 6999999998 9999998754 2234589999999999999964 238999999999999987743222 22334
Q ss_pred eccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 220 AYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 220 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
+......+.++.||+.|..|..++.|+.+.+|+
T Consensus 252 l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 252 LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred cccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 455678899999999998777788899999996
No 49
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-32 Score=218.57 Aligned_cols=230 Identities=16% Similarity=0.206 Sum_probs=198.8
Q ss_pred CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
+...++++|+| .|++|++... +++.++.+|- +.|..+.|+ +.-.+++++|+|.+|+||+.++.+++..
T Consensus 61 ~~qplFVSGGDDykIkVWnYk~r----rclftL~GHl-----DYVRt~~FH-heyPWIlSASDDQTIrIWNwqsr~~iav 130 (1202)
T KOG0292|consen 61 PTQPLFVSGGDDYKIKVWNYKTR----RCLFTLLGHL-----DYVRTVFFH-HEYPWILSASDDQTIRIWNWQSRKCIAV 130 (1202)
T ss_pred CCCCeEEecCCccEEEEEecccc----eehhhhcccc-----ceeEEeecc-CCCceEEEccCCCeEEEEeccCCceEEE
Confidence 34568888886 9999999998 9999999999 899999999 8899999999999999999999999999
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCC--------------------------eeeeeccCCCCCCee
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEH--------------------------STIIYESSEPDTPLV 133 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~--------------------------~~~~~~~~~~~~~i~ 133 (253)
+.+|...|.|.+|+ ..++++++|-|.+||+||+..-+. ..+.....+|...|+
T Consensus 131 ltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVN 210 (1202)
T KOG0292|consen 131 LTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVN 210 (1202)
T ss_pred EecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccc
Confidence 99999999999999 899999999999999999964221 011223456778999
Q ss_pred EEEeeCCCCCEEEEEEeCCCeEEEEECCCCC-CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCC
Q 035558 134 RLGWNKQDPRYMATIIMDSAKVVVLDIRFPT-LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVE 212 (253)
Q Consensus 134 ~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 212 (253)
.++|+| .-.+|++|+.|.. |++|.+...+ -.+.+..+|...|.++-|+|.. .++++.|+|++|+|||+.......
T Consensus 211 waAfhp-TlpliVSG~DDRq-VKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm~kRt~v~- 286 (1202)
T KOG0292|consen 211 WAAFHP-TLPLIVSGADDRQ-VKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDMTKRTSVQ- 286 (1202)
T ss_pred eEEecC-CcceEEecCCcce-eeEEEeccccceeehhhhcccCCcceEEecCcc-ceeEecCCCccEEEEeccccccee-
Confidence 999999 8889999888887 9999987644 2267788999999999999988 499999999999999999876544
Q ss_pred CCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 213 GGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
.+.....+.+.++-+|..+ +++++.|+.+.||++
T Consensus 287 ------tfrrendRFW~laahP~lN-LfAAgHDsGm~VFkl 320 (1202)
T KOG0292|consen 287 ------TFRRENDRFWILAAHPELN-LFAAGHDSGMIVFKL 320 (1202)
T ss_pred ------eeeccCCeEEEEEecCCcc-eeeeecCCceEEEEE
Confidence 5556678899999999986 888889999988874
No 50
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=6.5e-31 Score=212.89 Aligned_cols=216 Identities=16% Similarity=0.227 Sum_probs=166.2
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce--------eeeeeeccc
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA--------VDTQLIAHD 85 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--------~~~~~~~~~ 85 (253)
.|++|+.... ..+..+.+|. ++|.+++|+|.++++|++|+.||+|++||+.++. .+..+.+|.
T Consensus 55 vI~L~~~~r~----~~v~~L~gH~-----~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~ 125 (568)
T PTZ00420 55 AIRLENQMRK----PPVIKLKGHT-----SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK 125 (568)
T ss_pred EEEeeecCCC----ceEEEEcCCC-----CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC
Confidence 6777776554 5677889998 8999999995558999999999999999997542 234577899
Q ss_pred ccEEEEEec-CCC-eEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCC
Q 035558 86 KEVYDIAWG-GVG-VFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFP 163 (253)
Q Consensus 86 ~~v~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~ 163 (253)
..|.+++|+ ++. ++++++.|++|++||+++++....+. +...|.+++|+| ++.+|++++.|+. |++||++++
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~----~~~~V~Slswsp-dG~lLat~s~D~~-IrIwD~Rsg 199 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN----MPKKLSSLKWNI-KGNLLSGTCVGKH-MHIIDPRKQ 199 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe----cCCcEEEEEECC-CCCEEEEEecCCE-EEEEECCCC
Confidence 999999999 665 56799999999999999887433321 234899999999 8999999998888 999999986
Q ss_pred CCCeeeecccccceeEE-----EEecCCCCeEEEecCCC----cEEEEeccCCCCCCCCCCCCeeecc---CCCceeEEE
Q 035558 164 TLPVVELQRHQASVNAI-----AWAPHSSCHICTAGDDS----QALIWDLSSMGQPVEGGLDPILAYT---AGAEIEQLQ 231 (253)
Q Consensus 164 ~~~~~~~~~~~~~i~~~-----~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~v~~~~ 231 (253)
. .+..+.+|.+.+.+. .|++++ .+|++++.|+ .|+|||++....+. .... +.+.+....
T Consensus 200 ~-~i~tl~gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~pl-------~~~~ld~~~~~L~p~~ 270 (568)
T PTZ00420 200 E-IASSFHIHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTSAL-------VTMSIDNASAPLIPHY 270 (568)
T ss_pred c-EEEEEecccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCCce-------EEEEecCCccceEEee
Confidence 6 477888898765433 345787 5888877664 79999999765543 2222 233333444
Q ss_pred EcCCCCceEEEEcCCcEEEEEC
Q 035558 232 WSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 232 ~~~~~~~~~~~~~~~~i~vw~l 253 (253)
..+++..+++++.|+.|++|++
T Consensus 271 D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 271 DESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred eCCCCCEEEEEECCCeEEEEEc
Confidence 4556777778999999999985
No 51
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.8e-33 Score=204.17 Aligned_cols=224 Identities=17% Similarity=0.258 Sum_probs=190.1
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---ee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---VD 78 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~ 78 (253)
+.+++++|+ | +|++||++++ +++.++-+|. ..|..+.|+ ..++++++.|.++.+||+.... +.
T Consensus 246 d~rviisGSSDsTvrvWDv~tg----e~l~tlihHc-----eaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~r 313 (499)
T KOG0281|consen 246 DERVIVSGSSDSTVRVWDVNTG----EPLNTLIHHC-----EAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLR 313 (499)
T ss_pred cceEEEecCCCceEEEEeccCC----chhhHHhhhc-----ceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHH
Confidence 445778877 5 9999999999 9999999999 899999998 6799999999999999998665 45
Q ss_pred eeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558 79 TQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL 158 (253)
Q Consensus 79 ~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~ 158 (253)
..+.+|...|+.+.|+ .+++++++.|.+|++|++.+.+.+ ....+|...|.|+.+ .++++++|+.|.+ |++|
T Consensus 314 rVLvGHrAaVNvVdfd-~kyIVsASgDRTikvW~~st~efv---Rtl~gHkRGIAClQY---r~rlvVSGSSDnt-IRlw 385 (499)
T KOG0281|consen 314 RVLVGHRAAVNVVDFD-DKYIVSASGDRTIKVWSTSTCEFV---RTLNGHKRGIACLQY---RDRLVVSGSSDNT-IRLW 385 (499)
T ss_pred HHHhhhhhheeeeccc-cceEEEecCCceEEEEeccceeee---hhhhcccccceehhc---cCeEEEecCCCce-EEEE
Confidence 5677999999999995 669999999999999999999844 444567778888887 6789999999998 9999
Q ss_pred ECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCC--CCeeeccCCCceeEEEEcCCC
Q 035558 159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGL--DPILAYTAGAEIEQLQWSSSQ 236 (253)
Q Consensus 159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~ 236 (253)
|+..+. ++..+++|+.-|.++.|.. +.+++|+.||+|++||+.....|..... .......|.+.|..++|...
T Consensus 386 di~~G~-cLRvLeGHEeLvRciRFd~---krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f- 460 (499)
T KOG0281|consen 386 DIECGA-CLRVLEGHEELVRCIRFDN---KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF- 460 (499)
T ss_pred eccccH-HHHHHhchHHhhhheeecC---ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecce-
Confidence 999876 5899999999999999974 4799999999999999998876642111 12345578999999999654
Q ss_pred CceEEEEcCCcEEEEEC
Q 035558 237 PDWVAIAFSTKLQILRV 253 (253)
Q Consensus 237 ~~~~~~~~~~~i~vw~l 253 (253)
.+++++.|..|-||+.
T Consensus 461 -qIvsssHddtILiWdF 476 (499)
T KOG0281|consen 461 -QIISSSHDDTILIWDF 476 (499)
T ss_pred -EEEeccCCCeEEEEEc
Confidence 6999999999999984
No 52
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.6e-32 Score=187.83 Aligned_cols=202 Identities=21% Similarity=0.269 Sum_probs=182.6
Q ss_pred ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCC
Q 035558 28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADG 106 (253)
Q Consensus 28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg 106 (253)
+...++..++ ++|..+.|+ .++++.++++.|.+|++|+...+.+++++.+|..+|.+++.+ ++..|++|+.|.
T Consensus 8 kr~~~l~~~q-----gaV~avryN-~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk 81 (307)
T KOG0316|consen 8 KRLSILDCAQ-----GAVRAVRYN-VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDK 81 (307)
T ss_pred hhceeecccc-----cceEEEEEc-cCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCc
Confidence 4566778888 999999999 999999999999999999999999999999999999999999 999999999999
Q ss_pred cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC-CCeeeecccccceeEEEEecC
Q 035558 107 SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT-LPVVELQRHQASVNAIAWAPH 185 (253)
Q Consensus 107 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~ 185 (253)
.+.+||+.+++ ......+|.+.|+.++|+. +...+++|+.|.. +++||.|+.. +|++.+..-...|.++....
T Consensus 82 ~v~vwDV~TGk---v~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s-~r~wDCRS~s~ePiQildea~D~V~Si~v~~- 155 (307)
T KOG0316|consen 82 AVQVWDVNTGK---VDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSS-VRLWDCRSRSFEPIQILDEAKDGVSSIDVAE- 155 (307)
T ss_pred eEEEEEcccCe---eeeecccccceeeEEEecC-cceEEEeccccce-eEEEEcccCCCCccchhhhhcCceeEEEecc-
Confidence 99999999998 5666678888999999998 8899999999998 9999999865 67888888888999998874
Q ss_pred CCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 186 SSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 186 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
+.+++|+.||+++.||++.+.. ...-.+.||+++.|+++++..++++.|+.+++.+
T Consensus 156 --heIvaGS~DGtvRtydiR~G~l---------~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlD 211 (307)
T KOG0316|consen 156 --HEIVAGSVDGTVRTYDIRKGTL---------SSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLD 211 (307)
T ss_pred --cEEEeeccCCcEEEEEeeccee---------ehhhcCCcceeEEecCCCCEEEEeeccceeeecc
Confidence 5799999999999999999873 3334567999999999999999999999999875
No 53
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-32 Score=210.85 Aligned_cols=224 Identities=19% Similarity=0.267 Sum_probs=191.1
Q ss_pred CceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-eeeeee
Q 035558 5 PDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-AVDTQL 81 (253)
Q Consensus 5 ~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~ 81 (253)
.+.+++|+| .||||++++. +.+..+.+|. +.|.+++.+ |...+++++++|-+|++||.+.. .+.+++
T Consensus 67 knWiv~GsDD~~IrVfnynt~----ekV~~FeAH~-----DyIR~iavH-Pt~P~vLtsSDDm~iKlW~we~~wa~~qtf 136 (794)
T KOG0276|consen 67 KNWIVTGSDDMQIRVFNYNTG----EKVKTFEAHS-----DYIRSIAVH-PTLPYVLTSSDDMTIKLWDWENEWACEQTF 136 (794)
T ss_pred cceEEEecCCceEEEEecccc----eeeEEeeccc-----cceeeeeec-CCCCeEEecCCccEEEEeeccCceeeeeEE
Confidence 467889986 9999999998 9999999999 899999999 78889999999999999999865 578899
Q ss_pred ecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC-CCEEEEEEeCCCeEEEE
Q 035558 82 IAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD-PRYMATIIMDSAKVVVL 158 (253)
Q Consensus 82 ~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~i~~~ 158 (253)
.+|..-|.+++|+ |.+.|++++-|++|++|.+.+..+. +...+|+..|+++.+-+.. ..++++|+.|.. +++|
T Consensus 137 eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n---fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t-iKvW 212 (794)
T KOG0276|consen 137 EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN---FTLEGHEKGVNCVDYYTGGDKPYLISGADDLT-IKVW 212 (794)
T ss_pred cCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCc---eeeeccccCcceEEeccCCCcceEEecCCCce-EEEe
Confidence 9999999999999 9999999999999999999988743 3345888899999998732 358999888887 9999
Q ss_pred ECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCc
Q 035558 159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPD 238 (253)
Q Consensus 159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 238 (253)
|.++.. +++++.+|...|..+.|+|.-+ .+++||+||+++||+..+.+... .+.-...++++++-.+.+.
T Consensus 213 DyQtk~-CV~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~lE~-------tLn~gleRvW~I~~~k~~~- 282 (794)
T KOG0276|consen 213 DYQTKS-CVQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKLEK-------TLNYGLERVWCIAAHKGDG- 282 (794)
T ss_pred ecchHH-HHHHhhcccccceEEEecCCCc-EEEEecCCccEEEecCcceehhh-------hhhcCCceEEEEeecCCCC-
Confidence 999854 7999999999999999999996 99999999999999998876443 4444567899999888776
Q ss_pred eEEEEcCCcEEEEE
Q 035558 239 WVAIAFSTKLQILR 252 (253)
Q Consensus 239 ~~~~~~~~~i~vw~ 252 (253)
.++.|.|....+.+
T Consensus 283 ~i~vG~Deg~i~v~ 296 (794)
T KOG0276|consen 283 KIAVGFDEGSVTVK 296 (794)
T ss_pred eEEEeccCCcEEEE
Confidence 45666665554443
No 54
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-31 Score=209.97 Aligned_cols=233 Identities=22% Similarity=0.327 Sum_probs=199.4
Q ss_pred CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec
Q 035558 5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA 83 (253)
Q Consensus 5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 83 (253)
.+.||.+.+ .|++|+...+ +.......+. ..|+++.|+ +++++|++|..+|.|.|||.+..+.+..+.+
T Consensus 188 ~n~laValg~~vylW~~~s~----~v~~l~~~~~-----~~vtSv~ws-~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~ 257 (484)
T KOG0305|consen 188 ANVLAVALGQSVYLWSASSG----SVTELCSFGE-----ELVTSVKWS-PDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG 257 (484)
T ss_pred CCeEEEEecceEEEEecCCC----ceEEeEecCC-----CceEEEEEC-CCCCEEEEeecCCeEEEEehhhccccccccC
Confidence 457888888 9999999886 4444444445 789999999 9999999999999999999999999999998
Q ss_pred -ccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCC
Q 035558 84 -HDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF 162 (253)
Q Consensus 84 -~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~ 162 (253)
|...|-+++|+ +..+.+|+.|+.|..+|++..+.... ....|...|+.++|++ ++.++|+|+.|+. +.|||...
T Consensus 258 ~h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~-d~~~lASGgnDN~-~~Iwd~~~ 332 (484)
T KOG0305|consen 258 SHASRVGSLAWN-SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSP-DGNQLASGGNDNV-VFIWDGLS 332 (484)
T ss_pred CcCceeEEEecc-CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECC-CCCeeccCCCccc-eEeccCCC
Confidence 99999999996 88999999999999999998874333 3567888999999999 9999999999999 99999965
Q ss_pred CCCCeeeecccccceeEEEEecCCCCeEEEec--CCCcEEEEeccCCCCCCC----------------------------
Q 035558 163 PTLPVVELQRHQASVNAIAWAPHSSCHICTAG--DDSQALIWDLSSMGQPVE---------------------------- 212 (253)
Q Consensus 163 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~---------------------------- 212 (253)
. .+...+..|.+.|.+++|+|....+||+|+ .|++|++||..++.....
T Consensus 333 ~-~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 333 P-EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred c-cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCC
Confidence 4 468899999999999999998767999877 799999999987652210
Q ss_pred --------CCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 213 --------GGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 213 --------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
.......+.+|..+|..++++|+|..+++++.|.++++|++
T Consensus 412 ~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 412 QITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred cEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 00123456689999999999999999999999999999985
No 55
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.4e-30 Score=198.50 Aligned_cols=226 Identities=22% Similarity=0.354 Sum_probs=188.7
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
++++|++++ + .+++|++... +....+..|. ..+..+.|+ ++++.+++++.+|.|++|+++.++....+
T Consensus 20 ~~~~l~~~~~~g~i~i~~~~~~----~~~~~~~~~~-----~~i~~~~~~-~~~~~l~~~~~~~~i~i~~~~~~~~~~~~ 89 (289)
T cd00200 20 DGKLLATGSGDGTIKVWDLETG----ELLRTLKGHT-----GPVRDVAAS-ADGTYLASGSSDKTIRLWDLETGECVRTL 89 (289)
T ss_pred CCCEEEEeecCcEEEEEEeeCC----CcEEEEecCC-----cceeEEEEC-CCCCEEEEEcCCCeEEEEEcCcccceEEE
Confidence 466777777 5 9999999886 5677788888 788899999 77889999999999999999988888888
Q ss_pred ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558 82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160 (253)
Q Consensus 82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~ 160 (253)
..|...+.++.|+ ++.++++++.||.+++||+++.+....+ ..+...+.+++|+| ++.++++++.++. |++||+
T Consensus 90 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~i~~~~~~~-~~~~l~~~~~~~~-i~i~d~ 164 (289)
T cd00200 90 TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL---RGHTDWVNSVAFSP-DGTFVASSSQDGT-IKLWDL 164 (289)
T ss_pred eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe---ccCCCcEEEEEEcC-cCCEEEEEcCCCc-EEEEEc
Confidence 8899999999999 8788888888999999999976533333 35566899999999 6888888777888 999999
Q ss_pred CCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE
Q 035558 161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 240 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 240 (253)
+..+ ++..+..|...+.+++|+|++ ..+++++.|+.|++||++...... ....|...+.+++|+|++..++
T Consensus 165 ~~~~-~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~~ 235 (289)
T cd00200 165 RTGK-CVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGKCLG-------TLRGHENGVNSVAFSPDGYLLA 235 (289)
T ss_pred cccc-cceeEecCccccceEEECCCc-CEEEEecCCCcEEEEECCCCceec-------chhhcCCceEEEEEcCCCcEEE
Confidence 8755 477777888899999999998 588888889999999998755332 3447888999999999976555
Q ss_pred EEEcCCcEEEEEC
Q 035558 241 AIAFSTKLQILRV 253 (253)
Q Consensus 241 ~~~~~~~i~vw~l 253 (253)
+++.++.+++|++
T Consensus 236 ~~~~~~~i~i~~~ 248 (289)
T cd00200 236 SGSEDGTIRVWDL 248 (289)
T ss_pred EEcCCCcEEEEEc
Confidence 6666999999985
No 56
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.2e-31 Score=210.10 Aligned_cols=233 Identities=18% Similarity=0.217 Sum_probs=193.7
Q ss_pred CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
+||.++|+|++ +|+|||...+ -+..++..|+ ..|+.+.|+ ..++.+++.+.||+|+.||+...+..++
T Consensus 360 pDgq~iaTG~eDgKVKvWn~~Sg----fC~vTFteHt-----s~Vt~v~f~-~~g~~llssSLDGtVRAwDlkRYrNfRT 429 (893)
T KOG0291|consen 360 PDGQLIATGAEDGKVKVWNTQSG----FCFVTFTEHT-----SGVTAVQFT-ARGNVLLSSSLDGTVRAWDLKRYRNFRT 429 (893)
T ss_pred CCCcEEEeccCCCcEEEEeccCc----eEEEEeccCC-----CceEEEEEE-ecCCEEEEeecCCeEEeeeecccceeee
Confidence 67889999985 9999999998 9999999999 999999999 9999999999999999999999988888
Q ss_pred eecccccE--EEEEec-CCCeEEEEeCCCc-EEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558 81 LIAHDKEV--YDIAWG-GVGVFASVSADGS-VRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV 156 (253)
Q Consensus 81 ~~~~~~~v--~~~~~~-~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~ 156 (253)
+.. +.++ .+++.. .|.++..|+.|.. |.+|++.+++ .+....+|+++|.+++|+| .+..|++++.|.+ |+
T Consensus 430 ft~-P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq---llDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkT-VR 503 (893)
T KOG0291|consen 430 FTS-PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ---LLDILSGHEGPVSGLSFSP-DGSLLASGSWDKT-VR 503 (893)
T ss_pred ecC-CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe---eeehhcCCCCcceeeEEcc-ccCeEEeccccce-EE
Confidence 874 3344 455665 6888888888764 9999999998 4555678999999999999 9999999999999 99
Q ss_pred EEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCC-----------CCC--eeeccC
Q 035558 157 VLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGG-----------LDP--ILAYTA 223 (253)
Q Consensus 157 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~--~~~~~~ 223 (253)
+||+-.....+.++. +...+..++|.|+| ..|+++..||.|.+||.....+..... ... ......
T Consensus 504 iW~if~s~~~vEtl~-i~sdvl~vsfrPdG-~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~ 581 (893)
T KOG0291|consen 504 IWDIFSSSGTVETLE-IRSDVLAVSFRPDG-KELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAK 581 (893)
T ss_pred EEEeeccCceeeeEe-eccceeEEEEcCCC-CeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhccc
Confidence 999977654344444 57789999999999 699999999999999998765432100 000 011123
Q ss_pred CCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 224 GAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 224 ~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
....+.+++++||..++|+|..+.|.++++
T Consensus 582 ~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 582 GKTFTTICYSADGKCILAGGESNSICIYDV 611 (893)
T ss_pred CCceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence 578899999999999999999999999975
No 57
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.4e-32 Score=193.09 Aligned_cols=207 Identities=16% Similarity=0.222 Sum_probs=176.9
Q ss_pred cceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEecc-CceeeeeeecccccEEEEEec-CCCeEEEEeC
Q 035558 27 VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE-REAVDTQLIAHDKEVYDIAWG-GVGVFASVSA 104 (253)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~ 104 (253)
..+...+.+|+ +.|+.+.|+ |++.+|++|+.|..|.+|++. ..+....+++|.+.|..+.|. +++.+++++.
T Consensus 37 ~ap~m~l~gh~-----geI~~~~F~-P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gt 110 (338)
T KOG0265|consen 37 QAPIMLLPGHK-----GEIYTIKFH-PDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGT 110 (338)
T ss_pred cchhhhcCCCc-----ceEEEEEEC-CCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecC
Confidence 35566778898 999999999 699999999999999999954 445677888999999999999 9999999999
Q ss_pred CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEec
Q 035558 105 DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAP 184 (253)
Q Consensus 105 dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~ 184 (253)
|.+++.||.++++ .++....|...++++.-+.....++.+++.|++ +++||+|+.. +++.+. ....++++.|..
T Consensus 111 Dk~v~~wD~~tG~---~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t-~kl~D~R~k~-~~~t~~-~kyqltAv~f~d 184 (338)
T KOG0265|consen 111 DKTVRGWDAETGK---RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGT-LKLWDIRKKE-AIKTFE-NKYQLTAVGFKD 184 (338)
T ss_pred CceEEEEecccce---eeehhccccceeeecCccccCCeEEEecCCCce-EEEEeecccc-hhhccc-cceeEEEEEecc
Confidence 9999999999998 456666777788888855533455556666666 9999999754 455554 356789999999
Q ss_pred CCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 185 HSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 185 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
.++ .+.+|+-|+.|++||++...... .+.+|..+|+.+..+|+|.++++-+.|+.+++|++
T Consensus 185 ~s~-qv~sggIdn~ikvWd~r~~d~~~-------~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~ 245 (338)
T KOG0265|consen 185 TSD-QVISGGIDNDIKVWDLRKNDGLY-------TLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDV 245 (338)
T ss_pred ccc-ceeeccccCceeeeccccCcceE-------EeecccCceeeEEeccCCCccccccccceEEEEEe
Confidence 984 89999999999999999887654 88999999999999999999999999999999985
No 58
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-32 Score=217.96 Aligned_cols=228 Identities=21% Similarity=0.402 Sum_probs=194.8
Q ss_pred CCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 4 KPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 4 ~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
..++||+++. .|.+||+... ...+.+..+..|+ ..++++.|++....+|++|+.||.|++||++..+...++
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~-~rnk~l~~f~EH~-----Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~ 172 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKS-IRNKLLTVFNEHE-----RSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF 172 (839)
T ss_pred hhhhheeecCCCcEEEEecCcc-ccchhhhHhhhhc-----cceeeeeeccCCccEEEecCCCceEEEEeeecccccccc
Confidence 3568899885 9999999873 2236677889999 899999999888999999999999999999999999999
Q ss_pred ecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 82 IAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 82 ~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
.+....|++++|+ .+.+|+++.+.|.+++||+|... +.......|.++|.++.|+| ++.+||+||.|+. |+|||
T Consensus 173 ~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~--r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~-vkiWd 248 (839)
T KOG0269|consen 173 RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD--RCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKM-VKIWD 248 (839)
T ss_pred cccchhhhceeeccCCCceEEEecCCceEEEeeccCch--hHHHHhhcccCceEEEeecC-CCceeeecCCCcc-EEEEe
Confidence 9888999999999 89999999999999999999887 34455668899999999999 9999999999999 99999
Q ss_pred CCCCC-CCeeeecccccceeEEEEecCCCCeEEEec--CCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC
Q 035558 160 IRFPT-LPVVELQRHQASVNAIAWAPHSSCHICTAG--DDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ 236 (253)
Q Consensus 160 ~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 236 (253)
+.... .++..+. -..++.+++|-|.....|++++ .|-.|+|||++.+..|. ..+..|...++.++|....
T Consensus 249 ~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~------~t~~eH~~~vt~i~W~~~d 321 (839)
T KOG0269|consen 249 MTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPY------ATFLEHTDSVTGIAWDSGD 321 (839)
T ss_pred ccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccc------eeeeccCccccceeccCCC
Confidence 98654 3334443 3568999999999877888887 58999999999998887 6788899999999997644
Q ss_pred C-ceEEEEcCCcE
Q 035558 237 P-DWVAIAFSTKL 248 (253)
Q Consensus 237 ~-~~~~~~~~~~i 248 (253)
. .+.+++.|+.+
T Consensus 322 ~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 322 RINLWSCSKDGTV 334 (839)
T ss_pred ceeeEeecCccHH
Confidence 3 34578888765
No 59
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.5e-32 Score=208.16 Aligned_cols=213 Identities=15% Similarity=0.170 Sum_probs=180.0
Q ss_pred ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC-ceeeeeeecccccEEEEEec-CCCeEEEEeCC
Q 035558 28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER-EAVDTQLIAHDKEVYDIAWG-GVGVFASVSAD 105 (253)
Q Consensus 28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d 105 (253)
+.+.++.+|. ..|+++.|.|..+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+ ++..|++++.|
T Consensus 205 k~~~~~~gH~-----kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD 279 (503)
T KOG0282|consen 205 KLSHNLSGHT-----KGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFD 279 (503)
T ss_pred hheeeccCCc-----cccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecc
Confidence 5567788998 89999999977999999999999999999977 78999999999999999999 99999999999
Q ss_pred CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecC
Q 035558 106 GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPH 185 (253)
Q Consensus 106 g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~ 185 (253)
+.|++||.+++++...+.. ...++++.|+|++.+.+++|+.|+. |+.||+|+++. ++++..|-+.|..+.|-++
T Consensus 280 ~~lKlwDtETG~~~~~f~~----~~~~~cvkf~pd~~n~fl~G~sd~k-i~~wDiRs~kv-vqeYd~hLg~i~~i~F~~~ 353 (503)
T KOG0282|consen 280 RFLKLWDTETGQVLSRFHL----DKVPTCVKFHPDNQNIFLVGGSDKK-IRQWDIRSGKV-VQEYDRHLGAILDITFVDE 353 (503)
T ss_pred eeeeeeccccceEEEEEec----CCCceeeecCCCCCcEEEEecCCCc-EEEEeccchHH-HHHHHhhhhheeeeEEccC
Confidence 9999999999985544432 2378999999966699999999999 99999999774 8889999999999999999
Q ss_pred CCCeEEEecCCCcEEEEeccCCCCCCCCC---------------------------------------CCCeeeccC--C
Q 035558 186 SSCHICTAGDDSQALIWDLSSMGQPVEGG---------------------------------------LDPILAYTA--G 224 (253)
Q Consensus 186 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------------------------------------~~~~~~~~~--~ 224 (253)
+ +.+++.++|++++||+.+.+-...... .....+.+| .
T Consensus 354 g-~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~va 432 (503)
T KOG0282|consen 354 G-RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVA 432 (503)
T ss_pred C-ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceecc
Confidence 9 699999999999999987653111000 000122234 3
Q ss_pred CceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 225 AEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 225 ~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
+.-..+.|||+|++++++..+|.+.+|+
T Consensus 433 Gys~~v~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 433 GYSCQVDFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred CceeeEEEcCCCCeEEeecCCccEEEee
Confidence 4457789999999999999999999997
No 60
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=1.4e-31 Score=201.38 Aligned_cols=204 Identities=19% Similarity=0.378 Sum_probs=177.4
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce----------eeeeeecccccEEEEEec--CCCeEEEEeCCCcEEE
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA----------VDTQLIAHDKEVYDIAWG--GVGVFASVSADGSVRV 110 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----------~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i 110 (253)
+.|+.+.+.|.+...+++++..+.|+|||..... +-..+.+|...-++|+|+ ....+++++.|++|++
T Consensus 125 gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~l 204 (422)
T KOG0264|consen 125 GEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICL 204 (422)
T ss_pred ccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEE
Confidence 8899999998999999999999999999986532 122678999888999999 7779999999999999
Q ss_pred EEcCCCCC----eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCC-CCCCeeeecccccceeEEEEecC
Q 035558 111 FDLRDKEH----STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF-PTLPVVELQRHQASVNAIAWAPH 185 (253)
Q Consensus 111 ~d~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~ 185 (253)
||+..... ........+|+..|..++|+|.+..+|++++.|+. +.|||+|+ ..++.....+|.+.|++++|+|.
T Consensus 205 wdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~-L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~ 283 (422)
T KOG0264|consen 205 WDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK-LMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPF 283 (422)
T ss_pred EeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCe-EEEEEcCCCCCCCcccccccCCceeEEEeCCC
Confidence 99987643 33444556888899999999999999999999998 99999996 34567788899999999999998
Q ss_pred CCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE-EEEcCCcEEEEEC
Q 035558 186 SSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV-AIAFSTKLQILRV 253 (253)
Q Consensus 186 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~vw~l 253 (253)
++..||+||.|++|++||+++...+. ..+.+|...|..|.|+|....++ +++.|+.+.||++
T Consensus 284 ~~~ilAT~S~D~tV~LwDlRnL~~~l------h~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDl 346 (422)
T KOG0264|consen 284 NEFILATGSADKTVALWDLRNLNKPL------HTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDL 346 (422)
T ss_pred CCceEEeccCCCcEEEeechhcccCc------eeccCCCcceEEEEeCCCCCceeEecccCCcEEEEec
Confidence 88899999999999999999998765 78889999999999999876655 6788999999986
No 61
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.3e-32 Score=215.13 Aligned_cols=235 Identities=18% Similarity=0.372 Sum_probs=190.0
Q ss_pred ceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC---ceeeeee
Q 035558 6 DLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER---EAVDTQL 81 (253)
Q Consensus 6 ~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~ 81 (253)
.-++.++. .++||.++......++...++... ..+ ..+..+.|+....++||+++..|.|.+||+.. .+.+..+
T Consensus 52 ~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kq-n~~-~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f 129 (839)
T KOG0269|consen 52 NQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQ-NKF-YSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVF 129 (839)
T ss_pred ceeEEecccceeeEeeCcccCCcceeeeccccc-cee-eehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHh
Confidence 34566666 888998876533333333332221 111 46678889867789999999999999999986 5677788
Q ss_pred ecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 82 IAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 82 ~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
..|+..++++.|+ ...+|++|++||+|++||++..+....... ....|..++|+|..++.|+++...|. +.+||
T Consensus 130 ~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~---nSESiRDV~fsp~~~~~F~s~~dsG~-lqlWD 205 (839)
T KOG0269|consen 130 NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS---NSESIRDVKFSPGYGNKFASIHDSGY-LQLWD 205 (839)
T ss_pred hhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc---cchhhhceeeccCCCceEEEecCCce-EEEee
Confidence 9999999999999 899999999999999999998875444433 33489999999988889998887777 99999
Q ss_pred CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558 160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW 239 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 239 (253)
+|...++...+.+|.++|.++.|+|++ .+|||||.|+.|+|||+...... +........+|.+|.|-|..++.
T Consensus 206 lRqp~r~~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~------~~~tInTiapv~rVkWRP~~~~h 278 (839)
T KOG0269|consen 206 LRQPDRCEKKLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAK------PKHTINTIAPVGRVKWRPARSYH 278 (839)
T ss_pred ccCchhHHHHhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCcc------ceeEEeecceeeeeeeccCccch
Confidence 999999899999999999999999988 59999999999999999875532 24555668899999999999887
Q ss_pred EE---EEcCCcEEEEEC
Q 035558 240 VA---IAFSTKLQILRV 253 (253)
Q Consensus 240 ~~---~~~~~~i~vw~l 253 (253)
++ ...|-.|+||++
T Consensus 279 LAtcsmv~dtsV~VWDv 295 (839)
T KOG0269|consen 279 LATCSMVVDTSVHVWDV 295 (839)
T ss_pred hhhhhccccceEEEEee
Confidence 74 345778999986
No 62
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=4.6e-30 Score=206.75 Aligned_cols=218 Identities=15% Similarity=0.254 Sum_probs=167.2
Q ss_pred CCCCCceEEeec-C-cEEEEEccCCc---cccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc
Q 035558 1 ECQKPDLLATSS-D-FLRVWRISDED---RRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE 75 (253)
Q Consensus 1 sp~~~~~l~~~~-~-~v~iw~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 75 (253)
+|.++.+|++++ | +|++||+.... .....+..+.+|. ..|.+++|+|...++|++|+.|++|++||++++
T Consensus 84 sP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~-----~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg 158 (493)
T PTZ00421 84 NPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT-----KKVGIVSFHPSAMNVLASAGADMVVNVWDVERG 158 (493)
T ss_pred cCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCC-----CcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC
Confidence 466778888888 5 99999997641 1123567788998 899999999545679999999999999999999
Q ss_pred eeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCC-CeeEEEeeCCCCCEEEEEEe---
Q 035558 76 AVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDT-PLVRLGWNKQDPRYMATIIM--- 150 (253)
Q Consensus 76 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~~~~~--- 150 (253)
+.+..+.+|...|.+++|+ ++.+|++++.|++|++||+++++....+ ..|.+ ....+.|.+ ++..+++++.
T Consensus 159 ~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl---~~H~~~~~~~~~w~~-~~~~ivt~G~s~s 234 (493)
T PTZ00421 159 KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSV---EAHASAKSQRCLWAK-RKDLIITLGCSKS 234 (493)
T ss_pred eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEE---ecCCCCcceEEEEcC-CCCeEEEEecCCC
Confidence 9888899999999999999 9999999999999999999988743333 23332 345678888 6666666553
Q ss_pred -CCCeEEEEECCCCCCCeeeecccc-cceeEEEEecCCCCeEEEec-CCCcEEEEeccCCCCCCCCCCCCeeeccCCCce
Q 035558 151 -DSAKVVVLDIRFPTLPVVELQRHQ-ASVNAIAWAPHSSCHICTAG-DDSQALIWDLSSMGQPVEGGLDPILAYTAGAEI 227 (253)
Q Consensus 151 -~~~~i~~~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v 227 (253)
++. |++||+++...++.....+. ..+....|++++ .+|++++ .|+.|++||+.++.... .....+..++
T Consensus 235 ~Dr~-VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~-~~L~lggkgDg~Iriwdl~~~~~~~------~~~~~s~~~~ 306 (493)
T PTZ00421 235 QQRQ-IMLWDTRKMASPYSTVDLDQSSALFIPFFDEDT-NLLYIGSKGEGNIRCFELMNERLTF------CSSYSSVEPH 306 (493)
T ss_pred CCCe-EEEEeCCCCCCceeEeccCCCCceEEEEEcCCC-CEEEEEEeCCCeEEEEEeeCCceEE------EeeccCCCCC
Confidence 455 99999998776665554333 456667889998 5787776 59999999999865322 2233456678
Q ss_pred eEEEEcCC
Q 035558 228 EQLQWSSS 235 (253)
Q Consensus 228 ~~~~~~~~ 235 (253)
..++|.|.
T Consensus 307 ~g~~~~pk 314 (493)
T PTZ00421 307 KGLCMMPK 314 (493)
T ss_pred cceEeccc
Confidence 88888885
No 63
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-31 Score=198.13 Aligned_cols=234 Identities=17% Similarity=0.305 Sum_probs=186.6
Q ss_pred CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
++|.+||+++. +.-+|++... ...+...++.+|. .+|..+.|+ |+.++|++++.|..+.+||+.++.....
T Consensus 234 ~nGkyLAsaSkD~Taiiw~v~~d-~~~kl~~tlvgh~-----~~V~yi~wS-PDdryLlaCg~~e~~~lwDv~tgd~~~~ 306 (519)
T KOG0293|consen 234 HNGKYLASASKDSTAIIWIVVYD-VHFKLKKTLVGHS-----QPVSYIMWS-PDDRYLLACGFDEVLSLWDVDTGDLRHL 306 (519)
T ss_pred CCCeeEeeccCCceEEEEEEecC-cceeeeeeeeccc-----CceEEEEEC-CCCCeEEecCchHheeeccCCcchhhhh
Confidence 68999999994 9999998765 4478889999999 899999999 8999999999999999999999998877
Q ss_pred ee-cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCee----------------------ee--------e-----
Q 035558 81 LI-AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHST----------------------II--------Y----- 123 (253)
Q Consensus 81 ~~-~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~----------------------~~--------~----- 123 (253)
+. ++...+.+.+|. ++..+++|+.|+++..||+....... .+ +
T Consensus 307 y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~ 386 (519)
T KOG0293|consen 307 YPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR 386 (519)
T ss_pred cccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhh
Confidence 75 456889999999 99999999999999999987542100 00 0
Q ss_pred ---ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccccc--ceeEEEEecCCCCeEEEecCCCc
Q 035558 124 ---ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQA--SVNAIAWAPHSSCHICTAGDDSQ 198 (253)
Q Consensus 124 ---~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~dg~ 198 (253)
.....+.+|+++..+. ++.++++.-.+.. +++||+.... .+..+.+|.. .+-.-+|.--.+.++++||+|+.
T Consensus 387 ~dr~lise~~~its~~iS~-d~k~~LvnL~~qe-i~LWDl~e~~-lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k 463 (519)
T KOG0293|consen 387 VDRGLISEEQPITSFSISK-DGKLALVNLQDQE-IHLWDLEENK-LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK 463 (519)
T ss_pred hhhccccccCceeEEEEcC-CCcEEEEEcccCe-eEEeecchhh-HHHHhhcccccceEEEeccCCCCcceEEecCCCce
Confidence 0011234778888877 7777777766766 8889888544 3667777764 34445666544469999999999
Q ss_pred EEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE-EEEcCCcEEEEEC
Q 035558 199 ALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV-AIAFSTKLQILRV 253 (253)
Q Consensus 199 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~vw~l 253 (253)
|+||+..+++... .+.+|...|++++|+|..+.++ +++.|++||||..
T Consensus 464 vyIWhr~sgkll~-------~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 464 VYIWHRISGKLLA-------VLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred EEEEEccCCceeE-------eecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 9999999987554 8899999999999999988655 6788999999963
No 64
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=1.1e-30 Score=195.79 Aligned_cols=226 Identities=19% Similarity=0.280 Sum_probs=194.8
Q ss_pred CceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558 5 PDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI 82 (253)
Q Consensus 5 ~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 82 (253)
...+.+|+ | .+.++|...+ +.+.+++||. ..|+.+.|+ ++...+++++.|-.|+||............
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~----q~l~~~~Gh~-----kki~~v~~~-~~~~~v~~aSad~~i~vws~~~~s~~~~~~ 300 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSN----QILATLKGHT-----KKITSVKFH-KDLDTVITASADEIIRVWSVPLSSEPTSSR 300 (506)
T ss_pred CCcceecCCCCceEEEecchh----hhhhhccCcc-----eEEEEEEec-cchhheeecCCcceEEeeccccccCccccc
Confidence 35666777 5 9999999998 9999999999 899999999 888999999999999999998888788888
Q ss_pred cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558 83 AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR 161 (253)
Q Consensus 83 ~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~ 161 (253)
.|..+|+.+..+ .+++|++++.||+..+.|++++......... ...-.+++.+||| ||.+|.+|..|+. +++||+.
T Consensus 301 ~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-~s~v~~ts~~fHp-DgLifgtgt~d~~-vkiwdlk 377 (506)
T KOG0289|consen 301 PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE-TSDVEYTSAAFHP-DGLIFGTGTPDGV-VKIWDLK 377 (506)
T ss_pred cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec-cccceeEEeeEcC-CceEEeccCCCce-EEEEEcC
Confidence 999999999999 9999999999999999999999865554432 3334799999999 9999999999998 9999999
Q ss_pred CCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558 162 FPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA 241 (253)
Q Consensus 162 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 241 (253)
.+.. +..|.+|.++|..++|+.+| .+|+++.+|+.|++||++..+... ........++.++.|.+.|+++..
T Consensus 378 s~~~-~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~k------t~~l~~~~~v~s~~fD~SGt~L~~ 449 (506)
T KOG0289|consen 378 SQTN-VAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFK------TIQLDEKKEVNSLSFDQSGTYLGI 449 (506)
T ss_pred Cccc-cccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccc------eeeccccccceeEEEcCCCCeEEe
Confidence 8774 89999999999999999999 799999999999999999877432 233334458999999999998888
Q ss_pred EEcCCcEEEE
Q 035558 242 IAFSTKLQIL 251 (253)
Q Consensus 242 ~~~~~~i~vw 251 (253)
++.+=.|.++
T Consensus 450 ~g~~l~Vy~~ 459 (506)
T KOG0289|consen 450 AGSDLQVYIC 459 (506)
T ss_pred ecceeEEEEE
Confidence 8665555444
No 65
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.4e-31 Score=210.80 Aligned_cols=204 Identities=17% Similarity=0.209 Sum_probs=164.6
Q ss_pred ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec--CCCeEEEEeCC
Q 035558 28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG--GVGVFASVSAD 105 (253)
Q Consensus 28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d 105 (253)
+++..+.||. +.|.+++|+ ..++|++++.|.+|++|++...+++..|. |...|+|++|+ |.++|++|+-|
T Consensus 360 kP~~ef~GHt-----~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD 431 (712)
T KOG0283|consen 360 KPFCEFKGHT-----ADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLD 431 (712)
T ss_pred cchhhhhccc-----hhheecccc--cCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccc
Confidence 4456677787 899999998 56789999999999999999999999887 99999999999 99999999999
Q ss_pred CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeee--ccc------ccce
Q 035558 106 GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVEL--QRH------QASV 177 (253)
Q Consensus 106 g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~------~~~i 177 (253)
|.|+||++...+ +..-...+ .-|++++|.| +|+..++|+.+|. +++|+....+. .... ..| ...|
T Consensus 432 ~KvRiWsI~d~~---Vv~W~Dl~-~lITAvcy~P-dGk~avIGt~~G~-C~fY~t~~lk~-~~~~~I~~~~~Kk~~~~rI 504 (712)
T KOG0283|consen 432 GKVRLWSISDKK---VVDWNDLR-DLITAVCYSP-DGKGAVIGTFNGY-CRFYDTEGLKL-VSDFHIRLHNKKKKQGKRI 504 (712)
T ss_pred cceEEeecCcCe---eEeehhhh-hhheeEEecc-CCceEEEEEeccE-EEEEEccCCeE-EEeeeEeeccCccccCcee
Confidence 999999998776 22222222 4899999999 8999999999999 99999987542 1111 111 2279
Q ss_pred eEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC--CCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 178 NAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA--GAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
+++.|.|..+..+++.+.|..|||||.+...... .+.++ ...-...+|+.+|+++++++.|..|.+|++
T Consensus 505 TG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~-------KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 505 TGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVH-------KFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred eeeEecCCCCCeEEEecCCCceEEEeccchhhhh-------hhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 9999999776668888899999999997655332 33332 333456789999999999999999999984
No 66
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.5e-32 Score=197.68 Aligned_cols=226 Identities=15% Similarity=0.218 Sum_probs=184.5
Q ss_pred CCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc----
Q 035558 2 CQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE---- 75 (253)
Q Consensus 2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---- 75 (253)
|.....+++|+ | .|++||+... .+..++++|. +.|..|++. . ..+++++.|.+|+.|.++..
T Consensus 76 p~~ls~~aSGs~DG~VkiWnlsqR----~~~~~f~AH~-----G~V~Gi~v~-~--~~~~tvgdDKtvK~wk~~~~p~~t 143 (433)
T KOG0268|consen 76 PNKLSTVASGSCDGEVKIWNLSQR----ECIRTFKAHE-----GLVRGICVT-Q--TSFFTVGDDKTVKQWKIDGPPLHT 143 (433)
T ss_pred cchhhhhhccccCceEEEEehhhh----hhhheeeccc-----CceeeEEec-c--cceEEecCCcceeeeeccCCccee
Confidence 44445677877 6 9999999997 8899999999 999999997 3 66788889999999974421
Q ss_pred ----------------------------------eeeeeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCe
Q 035558 76 ----------------------------------AVDTQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHS 119 (253)
Q Consensus 76 ----------------------------------~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 119 (253)
.+++.+.--...|.++.|+ ....|++|+.|+.|.+||+++..+.
T Consensus 144 ilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl 223 (433)
T KOG0268|consen 144 ILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPL 223 (433)
T ss_pred eeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCcc
Confidence 1222222223456777777 6778999999999999999999866
Q ss_pred eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcE
Q 035558 120 TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQA 199 (253)
Q Consensus 120 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i 199 (253)
..+.... .-+.++|+| ++..+++++.|.+ ++.||++....|+....+|...|.+++|+|.| +-+++||.|.+|
T Consensus 224 ~KVi~~m----RTN~IswnP-eafnF~~a~ED~n-lY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG-~EfvsgsyDksI 296 (433)
T KOG0268|consen 224 KKVILTM----RTNTICWNP-EAFNFVAANEDHN-LYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTG-QEFVSGSYDKSI 296 (433)
T ss_pred ceeeeec----cccceecCc-cccceeecccccc-ceehhhhhhcccchhhcccceeEEEeccCCCc-chhccccccceE
Confidence 5553322 556799999 9999999999999 99999999999999999999999999999999 799999999999
Q ss_pred EEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 200 LIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 200 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
+||..+.+.... .....--..|.++.|+-|.+++++|+.|+.|++|+
T Consensus 297 RIf~~~~~~SRd------iYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 297 RIFPVNHGHSRD------IYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred EEeecCCCcchh------hhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 999998776432 12222356799999999999999999999999997
No 67
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=3.5e-31 Score=207.35 Aligned_cols=235 Identities=15% Similarity=0.205 Sum_probs=200.2
Q ss_pred CCCCCceEEeec-C-cEEEEEccCCccc--cceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-
Q 035558 1 ECQKPDLLATSS-D-FLRVWRISDEDRR--VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE- 75 (253)
Q Consensus 1 sp~~~~~l~~~~-~-~v~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~- 75 (253)
|++++++|.+|+ | .|++|+....... ......++.|. +.|..+... .+++.|++++.|-+|++|+...+
T Consensus 33 da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~Hs-----DWVNDiiL~-~~~~tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 33 DAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHS-----DWVNDIILC-GNGKTLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred cCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhH-----hHHhhHHhh-cCCCceEEecCCceEEEeecccCc
Confidence 467888888888 5 9999998764221 22467788898 899999988 88989999999999999999877
Q ss_pred -eeeeeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCC-------eeeeecc-CCCCCCeeEEEeeCCCCCE
Q 035558 76 -AVDTQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEH-------STIIYES-SEPDTPLVRLGWNKQDPRY 144 (253)
Q Consensus 76 -~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~-~~~~~~i~~~~~~~~~~~~ 144 (253)
-++.++..|.+.|.|+++- +..++|+|+.|+.|.+||++++.. ....... .++..+|++++.++ .+..
T Consensus 107 ~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceE
Confidence 4778889999999999994 889999999999999999997732 1111122 26677999999999 8889
Q ss_pred EEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCC
Q 035558 145 MATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAG 224 (253)
Q Consensus 145 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 224 (253)
|++|+..+. +++||.++.++ +..+++|...|..+..+++| +.++++|.||+|++||+....... .+..|.
T Consensus 186 ivsGgtek~-lr~wDprt~~k-imkLrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQrCl~-------T~~vH~ 255 (735)
T KOG0308|consen 186 IVSGGTEKD-LRLWDPRTCKK-IMKLRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQRCLA-------TYIVHK 255 (735)
T ss_pred EEecCcccc-eEEeccccccc-eeeeeccccceEEEEEcCCC-CeEeecCCCceEEeeeccccceee-------eEEecc
Confidence 999999988 99999999776 88889999999999999999 799999999999999999887765 678899
Q ss_pred CceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 225 AEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 225 ~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
..|+++..+|+-..+.+++.|+.|..=+
T Consensus 256 e~VWaL~~~~sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 256 EGVWALQSSPSFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred CceEEEeeCCCcceEEecCCCCcEEecc
Confidence 9999999999988899999999886543
No 68
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.98 E-value=1.5e-30 Score=192.08 Aligned_cols=239 Identities=25% Similarity=0.500 Sum_probs=187.3
Q ss_pred ceEEeecC--cEEEEEccCC------------ccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEe
Q 035558 6 DLLATSSD--FLRVWRISDE------------DRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWD 71 (253)
Q Consensus 6 ~~l~~~~~--~v~iw~~~~~------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 71 (253)
.+.|+=++ .|+||++... ....+++.++.+|+ ..=++++|||.....|++|..-+.|++|.
T Consensus 166 ~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk-----~EGy~LdWSp~~~g~LlsGDc~~~I~lw~ 240 (440)
T KOG0302|consen 166 VLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHK-----GEGYGLDWSPIKTGRLLSGDCVKGIHLWE 240 (440)
T ss_pred ceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccC-----ccceeeecccccccccccCccccceEeee
Confidence 34555555 9999998542 23456778888898 66779999976667789999999999999
Q ss_pred ccCcee---eeeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEE
Q 035558 72 IEREAV---DTQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMA 146 (253)
Q Consensus 72 ~~~~~~---~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 146 (253)
..++.- ...+.+|+..|-+|+|+ ....|++|+-||+|+|||+|.+.....+.. ..|.+-|+.+.|+. ...+||
T Consensus 241 ~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr-~~~lLa 318 (440)
T KOG0302|consen 241 PSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNR-REPLLA 318 (440)
T ss_pred eccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccC-Ccceee
Confidence 988752 23455799999999999 788999999999999999999854444443 57777999999998 555899
Q ss_pred EEEeCCCeEEEEECCCCC--CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCC------CC---CCC
Q 035558 147 TIIMDSAKVVVLDIRFPT--LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQP------VE---GGL 215 (253)
Q Consensus 147 ~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~---~~~ 215 (253)
+|+.+|. ++|||+|..+ .|+..++.|..+|+++.|+|.....|++++.|..|.+||+.-.... .. ...
T Consensus 319 sG~DdGt-~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dl 397 (440)
T KOG0302|consen 319 SGGDDGT-LSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDL 397 (440)
T ss_pred ecCCCce-EEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcC
Confidence 9998888 9999999754 6789999999999999999987779999999999999999754321 11 113
Q ss_pred CCeeeccC--CCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 216 DPILAYTA--GAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 216 ~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
.|..++-| ...+..+.|+++-+.++....-..+.||+
T Consensus 398 PpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 398 PPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred CceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence 34555656 56799999999987766554444566664
No 69
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.8e-30 Score=195.04 Aligned_cols=237 Identities=19% Similarity=0.306 Sum_probs=188.0
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeee-------------cCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEE
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLL-------------NGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCT 68 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 68 (253)
.|+++|.|. + .|.|||++-. +...+..++ +.+....|+..|.+++|+....+.||+|+.|.+|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~-d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIV-DAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccCceeEEeccccc-cccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence 467999998 6 9999998754 111111111 22222234488999999966788999999999999
Q ss_pred EEeccCceeeeeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEE
Q 035558 69 IWDIEREAVDTQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMA 146 (253)
Q Consensus 69 vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 146 (253)
+||+.++++..++..|..+|.+++|+ .+..|++|+.|++|.+.|.|........... .+.|-.++|+|.....++
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~---~g~VEkv~w~~~se~~f~ 346 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF---DGEVEKVAWDPHSENSFF 346 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe---ccceEEEEecCCCceeEE
Confidence 99999999999999999999999999 8899999999999999999965433333333 347889999997778888
Q ss_pred EEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC---
Q 035558 147 TIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA--- 223 (253)
Q Consensus 147 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--- 223 (253)
++..||. ++-+|+|+..+++.++++|.++|.++++++.-+.+|++++.|+.+++|++...... ....|
T Consensus 347 ~~tddG~-v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~--------~v~~~~~~ 417 (463)
T KOG0270|consen 347 VSTDDGT-VYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK--------SVKEHSFK 417 (463)
T ss_pred EecCCce-EEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc--------cccccccc
Confidence 8888887 99999999989999999999999999999998889999999999999999864421 22222
Q ss_pred CCceeEEEEcCCCCceEE-EEcCCcEEEEEC
Q 035558 224 GAEIEQLQWSSSQPDWVA-IAFSTKLQILRV 253 (253)
Q Consensus 224 ~~~v~~~~~~~~~~~~~~-~~~~~~i~vw~l 253 (253)
-+...+.++.|+-..+++ +|..+.++||++
T Consensus 418 ~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 418 LGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred ccceeecccCCCcceEEEecCccceEEEeec
Confidence 234677888888777775 455556999985
No 70
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.98 E-value=2.7e-29 Score=192.52 Aligned_cols=230 Identities=19% Similarity=0.307 Sum_probs=197.4
Q ss_pred CCCCceEEeecC-----cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce
Q 035558 2 CQKPDLLATSSD-----FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA 76 (253)
Q Consensus 2 p~~~~~l~~~~~-----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 76 (253)
++..+++|+|.+ .+.+||. + .....+.+|. ..|+++.|-|.-+-++++|++|+.|.+|+-...+
T Consensus 113 ~ds~RI~avGEGrerfg~~F~~DS--G----~SvGei~GhS-----r~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFK 181 (603)
T KOG0318|consen 113 FDSKRIAAVGEGRERFGHVFLWDS--G----NSVGEITGHS-----RRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFK 181 (603)
T ss_pred CCCcEEEEEecCccceeEEEEecC--C----Cccceeeccc-----eeEeeeeccCCCceEEEeccCCCeEEEeeCCCee
Confidence 445556666653 4555554 4 4588999999 8999999997777889999999999999987778
Q ss_pred eeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558 77 VDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV 155 (253)
Q Consensus 77 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i 155 (253)
...+++.|..-|+++.|+ +++.|++++.||++.+||-.+++....+.....|.+.|..++|+| ++..+++++.|.. +
T Consensus 182 Fk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt-~ 259 (603)
T KOG0318|consen 182 FKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKT-I 259 (603)
T ss_pred eeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCce-E
Confidence 888888999999999999 999999999999999999999997777776778999999999999 9999999999998 9
Q ss_pred EEEECCCCCC------------------------------------------CeeeecccccceeEEEEecCCCCeEEEe
Q 035558 156 VVLDIRFPTL------------------------------------------PVVELQRHQASVNAIAWAPHSSCHICTA 193 (253)
Q Consensus 156 ~~~d~~~~~~------------------------------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 193 (253)
++||..+.+. +.+.+.+|...|+++..+|++ .+|++|
T Consensus 260 KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i~Sg 338 (603)
T KOG0318|consen 260 KIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-KTIYSG 338 (603)
T ss_pred EEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC-CEEEee
Confidence 9999875431 345567899999999999999 799999
Q ss_pred cCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 194 GDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 194 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
+.||.|.-|+..++..-. ..-..|...|.+++-+..+. +++++.|+.+++..
T Consensus 339 syDG~I~~W~~~~g~~~~------~~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~ 390 (603)
T KOG0318|consen 339 SYDGHINSWDSGSGTSDR------LAGKGHTNQIKGMAASESGE-LFTIGWDDTLRVIS 390 (603)
T ss_pred ccCceEEEEecCCccccc------cccccccceEEEEeecCCCc-EEEEecCCeEEEEe
Confidence 999999999999887432 34578999999999988664 99999999999875
No 71
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=6.6e-30 Score=188.68 Aligned_cols=229 Identities=18% Similarity=0.314 Sum_probs=186.0
Q ss_pred CceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCC--CCEEEEEeCCCeEEEEeccCce----
Q 035558 5 PDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAE--PRRIGTSSIDTTCTIWDIEREA---- 76 (253)
Q Consensus 5 ~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~---- 76 (253)
+..+.+|+ | .+++||... +...++.+|. ++|.+++|.-++ ...|++++.|.++++|..+.++
T Consensus 115 ~~~IltgsYDg~~riWd~~G-----k~~~~~~Ght-----~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~ 184 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKG-----KSIKTIVGHT-----GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK 184 (423)
T ss_pred CceEEEeecCCeeEEEecCC-----ceEEEEecCC-----cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh
Confidence 34566665 6 999999987 8899999999 899988886332 2369999999999999988775
Q ss_pred eeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCC----------------------CeeeeeccCCCCCCee
Q 035558 77 VDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKE----------------------HSTIIYESSEPDTPLV 133 (253)
Q Consensus 77 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~----------------------~~~~~~~~~~~~~~i~ 133 (253)
.+...++|+..|.+++.. ++..+++|+.|.+|.+|+..+.. ...++....+|..+|.
T Consensus 185 ~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs 264 (423)
T KOG0313|consen 185 ALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVS 264 (423)
T ss_pred HHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccccee
Confidence 333445999999999999 99999999999999999933211 0112334467888999
Q ss_pred EEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCC
Q 035558 134 RLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEG 213 (253)
Q Consensus 134 ~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 213 (253)
++.|++ ...+++++.|.+ |+.||+.+++. ...+.+ ...++++..+|.. .+|++|+.|..|++||.+++....
T Consensus 265 ~V~w~d--~~v~yS~SwDHT-Ik~WDletg~~-~~~~~~-~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~gs~-- 336 (423)
T KOG0313|consen 265 SVVWSD--ATVIYSVSWDHT-IKVWDLETGGL-KSTLTT-NKSLNCISYSPLS-KLLASGSSDRHIRLWDPRTGDGSV-- 336 (423)
T ss_pred eEEEcC--CCceEeecccce-EEEEEeecccc-eeeeec-CcceeEeeccccc-ceeeecCCCCceeecCCCCCCCce--
Confidence 999985 788999999998 99999999774 444443 5689999999988 699999999999999999876432
Q ss_pred CCCCeeeccCCCceeEEEEcCCCCce-EEEEcCCcEEEEEC
Q 035558 214 GLDPILAYTAGAEIEQLQWSSSQPDW-VAIAFSTKLQILRV 253 (253)
Q Consensus 214 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~i~vw~l 253 (253)
....+.+|.+.|.++.|+|...+. ++++.|+.+++||+
T Consensus 337 --v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 337 --VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV 375 (423)
T ss_pred --eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEe
Confidence 125677999999999999987754 48999999999986
No 72
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.9e-29 Score=178.83 Aligned_cols=226 Identities=17% Similarity=0.124 Sum_probs=184.2
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC--CCeEEEEeccCceee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI--DTTCTIWDIEREAVD 78 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~ 78 (253)
++|.+|++++ + ++++||...+ +..+++..++ ..+..++|- ...+.++.++. |.+|+..++.+.+.+
T Consensus 24 ~~G~~litss~dDsl~LYd~~~g----~~~~ti~skk-----yG~~~~~Ft-h~~~~~i~sStk~d~tIryLsl~dNkyl 93 (311)
T KOG1446|consen 24 DDGLLLITSSEDDSLRLYDSLSG----KQVKTINSKK-----YGVDLACFT-HHSNTVIHSSTKEDDTIRYLSLHDNKYL 93 (311)
T ss_pred CCCCEEEEecCCCeEEEEEcCCC----ceeeEeeccc-----ccccEEEEe-cCCceEEEccCCCCCceEEEEeecCceE
Confidence 4677777766 4 9999999998 8888888887 678888887 55556666665 889999999999999
Q ss_pred eeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558 79 TQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV 157 (253)
Q Consensus 79 ~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~ 157 (253)
+.+.||...|.+++.+ -++.+++++.|++|++||++..++...+... .-..++|+| +|.++|++...+. |++
T Consensus 94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-----~~pi~AfDp-~GLifA~~~~~~~-IkL 166 (311)
T KOG1446|consen 94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS-----GRPIAAFDP-EGLIFALANGSEL-IKL 166 (311)
T ss_pred EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC-----CCcceeECC-CCcEEEEecCCCe-EEE
Confidence 9999999999999999 7799999999999999999988766555433 223578999 9999999988876 999
Q ss_pred EECCCC-CCCeeeeccc---ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC---CCceeEE
Q 035558 158 LDIRFP-TLPVVELQRH---QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA---GAEIEQL 230 (253)
Q Consensus 158 ~d~~~~-~~~~~~~~~~---~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~v~~~ 230 (253)
||+|.. +.|...+.-. ....+.|.|+|+| ++++.+...+.+++.|.-.+.... .+..+ ..-..+.
T Consensus 167 yD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~G~~~~-------tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 167 YDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAFDGTVKS-------TFSGYPNAGNLPLSA 238 (311)
T ss_pred EEecccCCCCceeEccCCCCccceeeeEEcCCC-CEEEEEeCCCcEEEEEccCCcEee-------eEeeccCCCCcceeE
Confidence 999986 3555555443 5678999999999 699999999999999998887433 22222 2122677
Q ss_pred EEcCCCCceEEEEcCCcEEEEEC
Q 035558 231 QWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 231 ~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
.|+|+++.+++++.|+.|.+|++
T Consensus 239 ~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred EECCCCcEEEEecCCCcEEEEEc
Confidence 89999999999999999999985
No 73
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.8e-31 Score=187.20 Aligned_cols=220 Identities=14% Similarity=0.215 Sum_probs=182.6
Q ss_pred eEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce-eeeeeec
Q 035558 7 LLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA-VDTQLIA 83 (253)
Q Consensus 7 ~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~ 83 (253)
..|+++ | +.++||.-++ ..+..++ |+ --|.+++|+ .+.++|++|+.+..++|||++..+ +...+.+
T Consensus 73 ~aasaaadftakvw~a~tg----delhsf~-hk-----hivk~~af~-~ds~~lltgg~ekllrvfdln~p~App~E~~g 141 (334)
T KOG0278|consen 73 RAASAAADFTAKVWDAVTG----DELHSFE-HK-----HIVKAVAFS-QDSNYLLTGGQEKLLRVFDLNRPKAPPKEISG 141 (334)
T ss_pred hhhhhcccchhhhhhhhhh----hhhhhhh-hh-----heeeeEEec-ccchhhhccchHHHhhhhhccCCCCCchhhcC
Confidence 334444 5 9999998887 5566654 44 578999999 899999999999999999998765 6677889
Q ss_pred ccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCC
Q 035558 84 HDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF 162 (253)
Q Consensus 84 ~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~ 162 (253)
|.+.|..+.|+ ..+.++++..|++||+||.+++...+.+.. +.+|+++..++ ++.++.++. .++ |.+||..+
T Consensus 142 htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~----~s~VtSlEvs~-dG~ilTia~-gss-V~Fwdaks 214 (334)
T KOG0278|consen 142 HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF----NSPVTSLEVSQ-DGRILTIAY-GSS-VKFWDAKS 214 (334)
T ss_pred CCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec----CCCCcceeecc-CCCEEEEec-Cce-eEEecccc
Confidence 99999999999 888999999999999999999986666543 33899999998 888776653 333 99999988
Q ss_pred CCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE
Q 035558 163 PTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI 242 (253)
Q Consensus 163 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 242 (253)
... ++.+.. ...|.+..++|+. ..+++|++|..++.||..++.... ....+|.++|.++.|+|+|...+++
T Consensus 215 f~~-lKs~k~-P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeEi~------~~nkgh~gpVhcVrFSPdGE~yAsG 285 (334)
T KOG0278|consen 215 FGL-LKSYKM-PCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEEIG------SYNKGHFGPVHCVRFSPDGELYASG 285 (334)
T ss_pred ccc-eeeccC-ccccccccccCCC-ceEEecCcceEEEEEeccCCceee------ecccCCCCceEEEEECCCCceeecc
Confidence 664 555543 4578999999998 599999999999999999988654 2357899999999999999988899
Q ss_pred EcCCcEEEEEC
Q 035558 243 AFSTKLQILRV 253 (253)
Q Consensus 243 ~~~~~i~vw~l 253 (253)
+.||.|++|.+
T Consensus 286 SEDGTirlWQt 296 (334)
T KOG0278|consen 286 SEDGTIRLWQT 296 (334)
T ss_pred CCCceEEEEEe
Confidence 99999999974
No 74
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.4e-30 Score=209.20 Aligned_cols=201 Identities=16% Similarity=0.286 Sum_probs=165.6
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccC------------------------------------------------
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER------------------------------------------------ 74 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~------------------------------------------------ 74 (253)
+.|.++.|+ ++|++||+|+.|+.|+||.+..
T Consensus 268 gaIw~mKFS-~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~ 346 (712)
T KOG0283|consen 268 GAIWAMKFS-HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP 346 (712)
T ss_pred CcEEEEEeC-CCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence 999999999 9999999999999999998754
Q ss_pred ------------ceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCC
Q 035558 75 ------------EAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDP 142 (253)
Q Consensus 75 ------------~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 142 (253)
.+++..+.+|.+.|.+|.|+..++|++++.|.+|++|++...+++..+ .|..-|+|++|+|.|.
T Consensus 347 ~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F----~HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 347 CVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF----SHNDFVTCVAFNPVDD 422 (712)
T ss_pred cccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE----ecCCeeEEEEecccCC
Confidence 013345678999999999998889999999999999999998877666 5666999999999999
Q ss_pred CEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCC--CCCCCeee
Q 035558 143 RYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVE--GGLDPILA 220 (253)
Q Consensus 143 ~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~ 220 (253)
++|++|+-|+. |++|++...+ +.....-...|++++|.|+| ++.+.|+.+|.+++|+....+.... ........
T Consensus 423 ryFiSGSLD~K-vRiWsI~d~~--Vv~W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 423 RYFISGSLDGK-VRLWSISDKK--VVDWNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred CcEeecccccc-eEEeecCcCe--eEeehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 99999999999 9999998644 44444445789999999999 6999999999999999987653220 00001112
Q ss_pred ccCCCceeEEEEcCCCCc-eEEEEcCCcEEEEEC
Q 035558 221 YTAGAEIEQLQWSSSQPD-WVAIAFSTKLQILRV 253 (253)
Q Consensus 221 ~~~~~~v~~~~~~~~~~~-~~~~~~~~~i~vw~l 253 (253)
..|. .|++++|.|.... ++..+.|..|||+++
T Consensus 499 ~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 499 KQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred ccCc-eeeeeEecCCCCCeEEEecCCCceEEEec
Confidence 2234 8999999987654 889999999999974
No 75
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=4.9e-30 Score=185.29 Aligned_cols=240 Identities=14% Similarity=0.205 Sum_probs=196.4
Q ss_pred CCCceEEeec-C-cEEEEEccCC--------------ccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCe
Q 035558 3 QKPDLLATSS-D-FLRVWRISDE--------------DRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTT 66 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~--------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 66 (253)
++|.++|+|+ | .|+|.|++.. ...-..++++-.|. ++|+++.|+ |....|++|+.|++
T Consensus 122 ~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~-----devn~l~FH-Pre~ILiS~srD~t 195 (430)
T KOG0640|consen 122 PDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHV-----DEVNDLDFH-PRETILISGSRDNT 195 (430)
T ss_pred CCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhcc-----Ccccceeec-chhheEEeccCCCe
Confidence 5889999999 6 9999998721 01124567777787 899999999 88999999999999
Q ss_pred EEEEeccCceeeeeee--cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCC
Q 035558 67 CTIWDIEREAVDTQLI--AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPR 143 (253)
Q Consensus 67 i~vwd~~~~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 143 (253)
|+++|+......+.++ ....+|.++.|+ .|++++.|...-++++||+++-++.........|.+.|+++.+++ .++
T Consensus 196 vKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~ 274 (430)
T KOG0640|consen 196 VKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGS 274 (430)
T ss_pred EEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-Ccc
Confidence 9999997554333222 246799999999 999999999999999999999987666666678888999999999 999
Q ss_pred EEEEEEeCCCeEEEEECCCCCCCeeeec-cccc-ceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCC---------
Q 035558 144 YMATIIMDSAKVVVLDIRFPTLPVVELQ-RHQA-SVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVE--------- 212 (253)
Q Consensus 144 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~-~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------- 212 (253)
+.++++.||. |++||--+.+ ++.++. .|.+ .|.+..|..++ +++++.+.|..+++|.+.++.....
T Consensus 275 lYvTaSkDG~-IklwDGVS~r-Cv~t~~~AH~gsevcSa~Ftkn~-kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgr 351 (430)
T KOG0640|consen 275 LYVTASKDGA-IKLWDGVSNR-CVRTIGNAHGGSEVCSAVFTKNG-KYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGR 351 (430)
T ss_pred EEEEeccCCc-EEeeccccHH-HHHHHHhhcCCceeeeEEEccCC-eEEeecCCcceeeeeeecCCceEEEEecCCcccc
Confidence 9999999999 9999987655 465553 4554 69999999999 7999999999999999988652210
Q ss_pred ----------CC-----------------------CCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 213 ----------GG-----------------------LDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 213 ----------~~-----------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
.. .......+|++.+..+.-+|.++.+++++.|-.+|+|.
T Consensus 352 q~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 352 QKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred hhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 00 01234458999999999999999999999999999995
No 76
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=3.2e-29 Score=177.36 Aligned_cols=204 Identities=19% Similarity=0.273 Sum_probs=178.7
Q ss_pred eecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEE
Q 035558 32 LLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRV 110 (253)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i 110 (253)
.+++|+ .+++.+.++ .+|.+|++++.|.+..||-...|+.+.++.+|++.|+++... +...+++|+.|.++++
T Consensus 5 ~l~GHE-----RplTqiKyN-~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kL 78 (327)
T KOG0643|consen 5 LLQGHE-----RPLTQIKYN-REGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKL 78 (327)
T ss_pred ccccCc-----cccceEEec-CCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEE
Confidence 467898 899999999 999999999999999999998999999999999999999999 9999999999999999
Q ss_pred EEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC----CeEEEEECCCC------CCCeeeecccccceeEE
Q 035558 111 FDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS----AKVVVLDIRFP------TLPVVELQRHQASVNAI 180 (253)
Q Consensus 111 ~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~----~~i~~~d~~~~------~~~~~~~~~~~~~i~~~ 180 (253)
||+++++...... ...+|..+.|++ ++++++.+..+. +.|.++|++.. +.|...+..+...++.+
T Consensus 79 WDv~tGk~la~~k----~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a 153 (327)
T KOG0643|consen 79 WDVETGKQLATWK----TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSA 153 (327)
T ss_pred EEcCCCcEEEEee----cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeee
Confidence 9999998655443 233899999999 888877765432 24999999843 35688888899999999
Q ss_pred EEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 181 AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 181 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
-|.|-+ .+|++|.+||.|.+||++++.... .....|...|++++++|+..++++++.|.+.++|++
T Consensus 154 ~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~v------~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~ 219 (327)
T KOG0643|consen 154 LWGPLG-ETIIAGHEDGSISIYDARTGKELV------DSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDV 219 (327)
T ss_pred eecccC-CEEEEecCCCcEEEEEcccCceee------echhhhccccccccccCCcceEEecccCccceeeec
Confidence 999999 599999999999999999987554 344568899999999999999999999999999985
No 77
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=1.4e-29 Score=193.74 Aligned_cols=241 Identities=16% Similarity=0.261 Sum_probs=179.7
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee-
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT- 79 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~- 79 (253)
+.|..|++|+ | .|++||+...+..++..+.++..+. ..|.++.|+ +++..|++.+.....+|+|....+...
T Consensus 177 p~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~----h~i~sl~ys-~Tg~~iLvvsg~aqakl~DRdG~~~~e~ 251 (641)
T KOG0772|consen 177 PSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCET----HQINSLQYS-VTGDQILVVSGSAQAKLLDRDGFEIVEF 251 (641)
T ss_pred CCCceeeeccccceEEEEecccccccchhhhccCcccc----cccceeeec-CCCCeEEEEecCcceeEEccCCceeeee
Confidence 3566777877 7 9999999876444555555544332 479999999 788888888888899999987554322
Q ss_pred -----------eeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeecc---CCCCCCeeEEEeeCCCCC
Q 035558 80 -----------QLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYES---SEPDTPLVRLGWNKQDPR 143 (253)
Q Consensus 80 -----------~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~ 143 (253)
.-++|...+++.+|+ ..+.|++++.||++++||+...+....+... .+..-+++.++|+| ++.
T Consensus 252 ~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~ 330 (641)
T KOG0772|consen 252 SKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGK 330 (641)
T ss_pred eccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-Ccc
Confidence 235899999999999 7789999999999999999876543333322 22334789999999 999
Q ss_pred EEEEEEeCCCeEEEEECCCCC-CC-eeeeccccc--ceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCC---
Q 035558 144 YMATIIMDSAKVVVLDIRFPT-LP-VVELQRHQA--SVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLD--- 216 (253)
Q Consensus 144 ~l~~~~~~~~~i~~~d~~~~~-~~-~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--- 216 (253)
+||+|..||. |.+|+.+... .+ ...-.+|.. .|+++.|+++| ++|++-+.|+++++||++..++++.....
T Consensus 331 ~iAagc~DGS-IQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t 408 (641)
T KOG0772|consen 331 LIAAGCLDGS-IQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG-NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPT 408 (641)
T ss_pred hhhhcccCCc-eeeeecCCcccccceEeeeccCCCCceeEEEecccc-chhhhccCCCceeeeeccccccchhhhcCCCc
Confidence 9999999999 9999986644 22 344456877 89999999999 79999999999999999998765411000
Q ss_pred ----------------------------C-------------eeeccCCCceeEEEEcCCCCceEEEEcCCcEEEE
Q 035558 217 ----------------------------P-------------ILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQIL 251 (253)
Q Consensus 217 ----------------------------~-------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw 251 (253)
. ....-....|..+.|+|.-+.+++++.||.++|+
T Consensus 409 ~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 409 PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred cCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 0 0111124566777888877778888888887775
No 78
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=4.7e-29 Score=179.27 Aligned_cols=226 Identities=20% Similarity=0.330 Sum_probs=172.6
Q ss_pred CCCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558 1 ECQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD 78 (253)
Q Consensus 1 sp~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 78 (253)
||+...++++++ | +||+|+++.. ..+.. +....|. ++|.+++|+ .++..+++|+.|+.+++||+.+++ .
T Consensus 36 SP~~~~~~~A~SWD~tVR~wevq~~-g~~~~-ka~~~~~-----~PvL~v~Ws-ddgskVf~g~~Dk~~k~wDL~S~Q-~ 106 (347)
T KOG0647|consen 36 SPQADNLLAAGSWDGTVRIWEVQNS-GQLVP-KAQQSHD-----GPVLDVCWS-DDGSKVFSGGCDKQAKLWDLASGQ-V 106 (347)
T ss_pred ccccCceEEecccCCceEEEEEecC-Ccccc-hhhhccC-----CCeEEEEEc-cCCceEEeeccCCceEEEEccCCC-e
Confidence 576777787777 7 9999999873 22222 4445566 899999999 899999999999999999999985 5
Q ss_pred eeeecccccEEEEEec-CC--CeEEEEeCCCcEEEEEcCCCCCeeeeeccCC----------------------------
Q 035558 79 TQLIAHDKEVYDIAWG-GV--GVFASVSADGSVRVFDLRDKEHSTIIYESSE---------------------------- 127 (253)
Q Consensus 79 ~~~~~~~~~v~~~~~~-~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------------------- 127 (253)
..+..|.++|..+.|- .. ..|+||+.|.+|+.||.|...+...+..+..
T Consensus 107 ~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~ 186 (347)
T KOG0647|consen 107 SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENP 186 (347)
T ss_pred eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCC
Confidence 5577799999999998 44 4899999999999999998764322211100
Q ss_pred ----------CCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC-CCeeeeccccc---------ceeEEEEecCCC
Q 035558 128 ----------PDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT-LPVVELQRHQA---------SVNAIAWAPHSS 187 (253)
Q Consensus 128 ----------~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~---------~i~~~~~~~~~~ 187 (253)
-+-.++|++..+ +....+.|+-+|. +-+..+.... ..-..++.|.. .|++++|+|..
T Consensus 187 ~te~k~~~SpLk~Q~R~va~f~-d~~~~alGsiEGr-v~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h- 263 (347)
T KOG0647|consen 187 PTEFKRIESPLKWQTRCVACFQ-DKDGFALGSIEGR-VAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH- 263 (347)
T ss_pred cchhhhhcCcccceeeEEEEEe-cCCceEeeeecce-EEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeeccc-
Confidence 112467777777 6666688888887 7777776532 22456666762 58889999987
Q ss_pred CeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE-EEEcC
Q 035558 188 CHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV-AIAFS 245 (253)
Q Consensus 188 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~ 245 (253)
..|+|++.||++.+||-....+.. ....|..+|++.+|+.+|..++ |.+.|
T Consensus 264 gtlvTaGsDGtf~FWDkdar~kLk-------~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 264 GTLVTAGSDGTFSFWDKDARTKLK-------TSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred ceEEEecCCceEEEecchhhhhhh-------ccCcCCCccceeEecCCCCEEEEEeecc
Confidence 499999999999999988876554 6667899999999999998665 55554
No 79
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.2e-29 Score=200.34 Aligned_cols=226 Identities=16% Similarity=0.230 Sum_probs=192.0
Q ss_pred CCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-----e
Q 035558 4 KPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-----A 76 (253)
Q Consensus 4 ~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----~ 76 (253)
.+++++.|.+ .+.+||+... ..+.+.++|. +.|.+++.+ |++..+++|+.|.+|++||+.-- .
T Consensus 423 gd~~Iv~G~k~Gel~vfdlaS~----~l~Eti~AHd-----gaIWsi~~~-pD~~g~vT~saDktVkfWdf~l~~~~~gt 492 (888)
T KOG0306|consen 423 GDRYIVLGTKNGELQVFDLASA----SLVETIRAHD-----GAIWSISLS-PDNKGFVTGSADKTVKFWDFKLVVSVPGT 492 (888)
T ss_pred CCceEEEeccCCceEEEEeehh----hhhhhhhccc-----cceeeeeec-CCCCceEEecCCcEEEEEeEEEEeccCcc
Confidence 3445555554 6777777665 6677778888 999999999 89999999999999999997522 1
Q ss_pred eeeeee-------cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558 77 VDTQLI-------AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI 148 (253)
Q Consensus 77 ~~~~~~-------~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 148 (253)
....+. .-+..|.|++++ ++.+|+.+--|.++++|-+.+-+ .....-+|.-||.||..+| +++++++|
T Consensus 493 ~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK---FflsLYGHkLPV~smDIS~-DSklivTg 568 (888)
T KOG0306|consen 493 QKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK---FFLSLYGHKLPVLSMDISP-DSKLIVTG 568 (888)
T ss_pred cceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee---eeeeecccccceeEEeccC-CcCeEEec
Confidence 111111 245789999999 99999999999999999999887 4444557888999999999 99999999
Q ss_pred EeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCcee
Q 035558 149 IMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIE 228 (253)
Q Consensus 149 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 228 (253)
+.|.+ |++|-+.-+. +.+.+.+|...|.++.|.|.. ++++++|.|+.|+-||-....... .+.+|...|+
T Consensus 569 SADKn-VKiWGLdFGD-CHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe~iq-------~L~~H~~ev~ 638 (888)
T KOG0306|consen 569 SADKN-VKIWGLDFGD-CHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFEEIQ-------KLDGHHSEVW 638 (888)
T ss_pred cCCCc-eEEeccccch-hhhhhhcccCceeEEEEcccc-eeEEEecCcceEEeechhhhhhhe-------eeccchheee
Confidence 99999 9999998765 689999999999999999987 799999999999999999887665 8899999999
Q ss_pred EEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 229 QLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
+++.+|+|.++++++.|..|++|+.
T Consensus 639 cLav~~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 639 CLAVSPNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred eeEEcCCCCeEEeccCCceeEeeec
Confidence 9999999999999999999999973
No 80
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=4.7e-30 Score=191.27 Aligned_cols=226 Identities=17% Similarity=0.353 Sum_probs=183.9
Q ss_pred CCCCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558 1 ECQKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT 79 (253)
Q Consensus 1 sp~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 79 (253)
++++...|+++.| .+++|+++.. +...++.+|+ +.|+++.|. .....+++|+.|.+|++||+....+..
T Consensus 228 d~~~~~~iAas~d~~~r~Wnvd~~----r~~~TLsGHt-----dkVt~ak~~-~~~~~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 228 DSDNKHVIAASNDKNLRLWNVDSL----RLRHTLSGHT-----DKVTAAKFK-LSHSRVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred cCCCceEEeecCCCceeeeeccch----hhhhhhcccc-----cceeeehhh-ccccceeeccccchhhhhhhhhhheec
Confidence 3677778888888 9999999997 9999999999 899999998 555569999999999999999887776
Q ss_pred eeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 80 QLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 80 ~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
++. ....+.+++.. ...+++|..|++|++||+++..+...+ +.+ +.|+++..++ ++..+.+++.|+. +.+.|
T Consensus 298 t~l-~~S~cnDI~~~-~~~~~SgH~DkkvRfwD~Rs~~~~~sv---~~g-g~vtSl~ls~-~g~~lLsssRDdt-l~viD 369 (459)
T KOG0288|consen 298 TVL-PGSQCNDIVCS-ISDVISGHFDKKVRFWDIRSADKTRSV---PLG-GRVTSLDLSM-DGLELLSSSRDDT-LKVID 369 (459)
T ss_pred ccc-ccccccceEec-ceeeeecccccceEEEeccCCceeeEe---ecC-cceeeEeecc-CCeEEeeecCCCc-eeeee
Confidence 654 23455556553 677899999999999999998854433 222 3899999999 8999999999999 99999
Q ss_pred CCCCCCCeeeeccc----ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCC-ceeEEEEcC
Q 035558 160 IRFPTLPVVELQRH----QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGA-EIEQLQWSS 234 (253)
Q Consensus 160 ~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~ 234 (253)
+++... ...+.+. ....+.+.|+|++ .|+++||.||.|+||++.+++... .....+.. .|++++|+|
T Consensus 370 lRt~eI-~~~~sA~g~k~asDwtrvvfSpd~-~YvaAGS~dgsv~iW~v~tgKlE~------~l~~s~s~~aI~s~~W~~ 441 (459)
T KOG0288|consen 370 LRTKEI-RQTFSAEGFKCASDWTRVVFSPDG-SYVAAGSADGSVYIWSVFTGKLEK------VLSLSTSNAAITSLSWNP 441 (459)
T ss_pred cccccE-EEEeeccccccccccceeEECCCC-ceeeeccCCCcEEEEEccCceEEE------EeccCCCCcceEEEEEcC
Confidence 998663 4444321 2348889999999 599999999999999999987543 22223333 799999999
Q ss_pred CCCceEEEEcCCcEEEEE
Q 035558 235 SQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 235 ~~~~~~~~~~~~~i~vw~ 252 (253)
.|.++++++.+..+.+|.
T Consensus 442 sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 442 SGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCchhhcccCCcceEecC
Confidence 999999999999999994
No 81
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=4.9e-29 Score=201.34 Aligned_cols=220 Identities=20% Similarity=0.254 Sum_probs=191.0
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
..+.+|++|+ | ++++||..++ ++...+.+|. ..|.++... ...+++|+.|.+|++|+++++..+..
T Consensus 259 ~~~~~lvsgS~D~t~rvWd~~sg----~C~~~l~gh~-----stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l~l 326 (537)
T KOG0274|consen 259 SGGDKLVSGSTDKTERVWDCSTG----ECTHSLQGHT-----SSVRCLTID---PFLLVSGSRDNTVKVWDVTNGACLNL 326 (537)
T ss_pred cCCCEEEEEecCCcEEeEecCCC----cEEEEecCCC-----ceEEEEEcc---CceEeeccCCceEEEEeccCcceEEE
Confidence 3577888988 6 9999999998 9999999999 889888865 67788899999999999999999999
Q ss_pred eecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558 81 LIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160 (253)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~ 160 (253)
+.+|.++|+++..+ +.++++|+.|++|++||+.+.++ +....+|...|+++.+.+ . ..+++|+.|+. |++||+
T Consensus 327 ~~~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~c---l~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~-IkvWdl 399 (537)
T KOG0274|consen 327 LRGHTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTGKC---LKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTT-IKVWDL 399 (537)
T ss_pred eccccccEEEEEec-CCEEEEEecCceEEEEEhhhcee---eeeecCCcceEEEEEecC-c-ceEEeeeeccc-eEeecC
Confidence 99999999999996 88999999999999999998874 444456888999998865 3 89999999988 999999
Q ss_pred CCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeecc-CCCceeEEEEcCCCCce
Q 035558 161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYT-AGAEIEQLQWSSSQPDW 239 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~ 239 (253)
++..+++..+.+|..-+..+.+. + ++|++++.|++|++||...++... ...+ |...|..+++. ...+
T Consensus 400 ~~~~~c~~tl~~h~~~v~~l~~~--~-~~Lvs~~aD~~Ik~WD~~~~~~~~-------~~~~~~~~~v~~l~~~--~~~i 467 (537)
T KOG0274|consen 400 RTKRKCIHTLQGHTSLVSSLLLR--D-NFLVSSSADGTIKLWDAEEGECLR-------TLEGRHVGGVSALALG--KEEI 467 (537)
T ss_pred CchhhhhhhhcCCcccccccccc--c-ceeEeccccccEEEeecccCceee-------eeccCCcccEEEeecC--cceE
Confidence 99745799999999988777654 3 589999999999999999988654 4444 67889998887 3468
Q ss_pred EEEEcCCcEEEEEC
Q 035558 240 VAIAFSTKLQILRV 253 (253)
Q Consensus 240 ~~~~~~~~i~vw~l 253 (253)
++++.++.+++|++
T Consensus 468 l~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 468 LCSSDDGSVKLWDL 481 (537)
T ss_pred EEEecCCeeEEEec
Confidence 99999999999986
No 82
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1e-28 Score=178.53 Aligned_cols=223 Identities=13% Similarity=0.187 Sum_probs=182.1
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCC-CCEEEEEeCCCeEEEEeccCceeeee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAE-PRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
++.++|+|+ | +|+|||+... .....+-.|. +.|+++.|.++- .+.|++|+.||.|.+|+...-+++..
T Consensus 52 s~~~~aSGssDetI~IYDm~k~----~qlg~ll~Ha-----gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s 122 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRKR----KQLGILLSHA-----GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS 122 (362)
T ss_pred cceeEeccCCCCcEEEEeccch----hhhcceeccc-----cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeee
Confidence 577899988 5 9999999987 7788888898 999999998432 24899999999999999999999999
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
+++|.+.|+.++.+ .+++-++.+.|+.+++||+-.++......... ..+.+.|+| .|.+++.++.++ |-+|.
T Consensus 123 lK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~----~at~v~w~~-~Gd~F~v~~~~~--i~i~q 195 (362)
T KOG0294|consen 123 LKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN----KATLVSWSP-QGDHFVVSGRNK--IDIYQ 195 (362)
T ss_pred ecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC----cceeeEEcC-CCCEEEEEeccE--EEEEe
Confidence 99999999999999 99999999999999999999887443332211 334599999 899888888775 99998
Q ss_pred CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEE--cCCCC
Q 035558 160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQW--SSSQP 237 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~ 237 (253)
+.+... ...+. ....+.++.|...+ .|++|+.|+.|++||......+ ..+.+|..+|.++.+ .|++.
T Consensus 196 ~d~A~v-~~~i~-~~~r~l~~~~l~~~--~L~vG~d~~~i~~~D~ds~~~~-------~~~~AH~~RVK~i~~~~~~~~~ 264 (362)
T KOG0294|consen 196 LDNASV-FREIE-NPKRILCATFLDGS--ELLVGGDNEWISLKDTDSDTPL-------TEFLAHENRVKDIASYTNPEHE 264 (362)
T ss_pred cccHhH-hhhhh-ccccceeeeecCCc--eEEEecCCceEEEeccCCCccc-------eeeecchhheeeeEEEecCCce
Confidence 876542 22222 23557777776654 8999999999999999985433 478899999999984 45677
Q ss_pred ceEEEEcCCcEEEEEC
Q 035558 238 DWVAIAFSTKLQILRV 253 (253)
Q Consensus 238 ~~~~~~~~~~i~vw~l 253 (253)
+++++++||.|+||++
T Consensus 265 ~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 265 YLVTASSDGFIKVWDI 280 (362)
T ss_pred EEEEeccCceEEEEEc
Confidence 8889999999999986
No 83
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=7.1e-28 Score=167.25 Aligned_cols=238 Identities=17% Similarity=0.210 Sum_probs=180.2
Q ss_pred CCCceEEeecC--cEEEEEccCC------c----cccc-eeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEE
Q 035558 3 QKPDLLATSSD--FLRVWRISDE------D----RRVE-LKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTI 69 (253)
Q Consensus 3 ~~~~~l~~~~~--~v~iw~~~~~------~----~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 69 (253)
+.|.+.++|++ ++||.....- . .++. ..+.-+.|+ +.|.|.+|+ +.+.++++|+.|.+|++
T Consensus 42 p~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhk-----gsiyc~~ws-~~geliatgsndk~ik~ 115 (350)
T KOG0641|consen 42 PAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHK-----GSIYCTAWS-PCGELIATGSNDKTIKV 115 (350)
T ss_pred CCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccC-----ccEEEEEec-CccCeEEecCCCceEEE
Confidence 56778888886 8888754321 0 0111 112233455 899999999 89999999999999998
Q ss_pred EeccCce----------------------------------------------------eeeeeecccccEEEEEecCCC
Q 035558 70 WDIEREA----------------------------------------------------VDTQLIAHDKEVYDIAWGGVG 97 (253)
Q Consensus 70 wd~~~~~----------------------------------------------------~~~~~~~~~~~v~~~~~~~~~ 97 (253)
.-++... ..+.+.+|++-|.++---++-
T Consensus 116 l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~ 195 (350)
T KOG0641|consen 116 LPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGA 195 (350)
T ss_pred EecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCc
Confidence 7654311 122334555555544211567
Q ss_pred eEEEEeCCCcEEEEEcCCCCCeeeeeccCC----CCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccc
Q 035558 98 VFASVSADGSVRVFDLRDKEHSTIIYESSE----PDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRH 173 (253)
Q Consensus 98 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 173 (253)
.+++|+.|.+|++||++-+.++..+..... ..+.|.+++..| .++++++|-.|.. ..+||++.+. +++.+..|
T Consensus 196 m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~dss-c~lydirg~r-~iq~f~ph 272 (350)
T KOG0641|consen 196 MFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHADSS-CMLYDIRGGR-MIQRFHPH 272 (350)
T ss_pred EEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-CcceeeeccCCCc-eEEEEeeCCc-eeeeeCCC
Confidence 789999999999999998876655533211 124789999999 9999999999998 9999999866 59999999
Q ss_pred ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 174 QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 174 ~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
...|.++.|+|.. .++++++.|..|++-|+...-... ........|...+..+.|+|+.-.+++.+.|..+.+|-+
T Consensus 273 sadir~vrfsp~a-~yllt~syd~~ikltdlqgdla~e---l~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 273 SADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLAHE---LPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred ccceeEEEeCCCc-eEEEEecccceEEEeecccchhhc---CceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 9999999999987 799999999999999997532111 122456679999999999999988999999999999964
No 84
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=8.6e-29 Score=199.90 Aligned_cols=219 Identities=17% Similarity=0.229 Sum_probs=189.1
Q ss_pred CceEEeecC--cEEEEEccCCccccceeee-ecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 5 PDLLATSSD--FLRVWRISDEDRRVELKSL-LNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 5 ~~~l~~~~~--~v~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
...+.++++ +|++|+...+ ..+.. +.+|. +.|.++++. ..+.++++|+.|.++++||..++++...+
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~----~~i~~~l~GH~-----g~V~~l~~~-~~~~~lvsgS~D~t~rvWd~~sg~C~~~l 287 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNG----YLILTRLVGHF-----GGVWGLAFP-SGGDKLVSGSTDKTERVWDCSTGECTHSL 287 (537)
T ss_pred cCeEEecCCCceeEEeecccc----eEEEeeccCCC-----CCceeEEEe-cCCCEEEEEecCCcEEeEecCCCcEEEEe
Confidence 345666664 9999999987 66666 99999 999999997 67899999999999999999999999999
Q ss_pred ecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558 82 IAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR 161 (253)
Q Consensus 82 ~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~ 161 (253)
.+|.+.|.++.. .+..+++|+.|.+|++|++.++.....+. +|..+|.++..+ +.++++|+.|+. |++||.+
T Consensus 288 ~gh~stv~~~~~-~~~~~~sgs~D~tVkVW~v~n~~~l~l~~---~h~~~V~~v~~~---~~~lvsgs~d~~-v~VW~~~ 359 (537)
T KOG0274|consen 288 QGHTSSVRCLTI-DPFLLVSGSRDNTVKVWDVTNGACLNLLR---GHTGPVNCVQLD---EPLLVSGSYDGT-VKVWDPR 359 (537)
T ss_pred cCCCceEEEEEc-cCceEeeccCCceEEEEeccCcceEEEec---cccccEEEEEec---CCEEEEEecCce-EEEEEhh
Confidence 999999998877 47788889999999999999888555443 377899999995 789999999997 9999999
Q ss_pred CCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCC-CCCCCCCCCCeeeccCCCceeEEEEcCCCCceE
Q 035558 162 FPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM-GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 240 (253)
Q Consensus 162 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 240 (253)
+.+ +++.+.+|...|.++.+.+. ..+++|+.|++|++||+++. +... .+.+|..-+..+.+. ++.++
T Consensus 360 ~~~-cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~-------tl~~h~~~v~~l~~~--~~~Lv 427 (537)
T KOG0274|consen 360 TGK-CLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIH-------TLQGHTSLVSSLLLR--DNFLV 427 (537)
T ss_pred hce-eeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhh-------hhcCCcccccccccc--cceeE
Confidence 755 69999999999999988876 38999999999999999998 5443 777888888777664 44789
Q ss_pred EEEcCCcEEEEEC
Q 035558 241 AIAFSTKLQILRV 253 (253)
Q Consensus 241 ~~~~~~~i~vw~l 253 (253)
+++.|+.|++|+.
T Consensus 428 s~~aD~~Ik~WD~ 440 (537)
T KOG0274|consen 428 SSSADGTIKLWDA 440 (537)
T ss_pred eccccccEEEeec
Confidence 9999999999974
No 85
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=5e-29 Score=198.26 Aligned_cols=226 Identities=16% Similarity=0.246 Sum_probs=196.0
Q ss_pred CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558 4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI 82 (253)
Q Consensus 4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 82 (253)
+..+++++++ .+++|+.++. ++++++.. ..+.+..|. |.++++++|...|.+.+||+.+...+..++
T Consensus 384 d~~~~~Sga~~SikiWn~~t~----kciRTi~~-------~y~l~~~Fv-pgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~ 451 (888)
T KOG0306|consen 384 DSILLASGAGESIKIWNRDTL----KCIRTITC-------GYILASKFV-PGDRYIVLGTKNGELQVFDLASASLVETIR 451 (888)
T ss_pred CceeeeecCCCcEEEEEccCc----ceeEEecc-------ccEEEEEec-CCCceEEEeccCCceEEEEeehhhhhhhhh
Confidence 4557777777 9999999987 88888865 458899999 889999999999999999999999999999
Q ss_pred cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCC-----eeeee----ccCCCCCCeeEEEeeCCCCCEEEEEEeCC
Q 035558 83 AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEH-----STIIY----ESSEPDTPLVRLGWNKQDPRYMATIIMDS 152 (253)
Q Consensus 83 ~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~----~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 152 (253)
+|.+.|++++.. ++..+++|+.|.+|++||+.-... .+.+. ..-.-+..|.|++++| ++.+++++--|+
T Consensus 452 AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdn 530 (888)
T KOG0306|consen 452 AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDN 530 (888)
T ss_pred ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccC
Confidence 999999999999 999999999999999999853211 11110 0012234899999999 999999999999
Q ss_pred CeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEE
Q 035558 153 AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQW 232 (253)
Q Consensus 153 ~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 232 (253)
+ +++|-+.+.+. ...+-+|.-||.||..+|++ ++++|||.|.+|++|-+.-+.+-. .+++|...|.++.|
T Consensus 531 T-VkVyflDtlKF-flsLYGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFGDCHK-------S~fAHdDSvm~V~F 600 (888)
T KOG0306|consen 531 T-VKVYFLDTLKF-FLSLYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFGDCHK-------SFFAHDDSVMSVQF 600 (888)
T ss_pred e-EEEEEecceee-eeeecccccceeEEeccCCc-CeEEeccCCCceEEeccccchhhh-------hhhcccCceeEEEE
Confidence 8 99999998775 67788999999999999999 699999999999999999887654 88899999999999
Q ss_pred cCCCCceEEEEcCCcEEEEE
Q 035558 233 SSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 233 ~~~~~~~~~~~~~~~i~vw~ 252 (253)
-|....++++|.|+.++-|+
T Consensus 601 ~P~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 601 LPKTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred cccceeEEEecCcceEEeec
Confidence 99988888999999999996
No 86
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2e-30 Score=188.66 Aligned_cols=231 Identities=16% Similarity=0.215 Sum_probs=190.0
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCcc---ccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSE---YCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV 77 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 77 (253)
|++++|++|+ | .|.+|++.++ +..+.++-..... ...+|.|++|+ .+...+++|+.||.|++|.+++|.+
T Consensus 223 PDgqyLvsgSvDGFiEVWny~~G----KlrKDLkYQAqd~fMMmd~aVlci~FS-RDsEMlAsGsqDGkIKvWri~tG~C 297 (508)
T KOG0275|consen 223 PDGQYLVSGSVDGFIEVWNYTTG----KLRKDLKYQAQDNFMMMDDAVLCISFS-RDSEMLASGSQDGKIKVWRIETGQC 297 (508)
T ss_pred CCCceEeeccccceeeeehhccc----hhhhhhhhhhhcceeecccceEEEeec-ccHHHhhccCcCCcEEEEEEecchH
Confidence 6889999999 5 9999999887 4444333221111 22799999999 8999999999999999999999999
Q ss_pred eeeee-cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558 78 DTQLI-AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV 155 (253)
Q Consensus 78 ~~~~~-~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i 155 (253)
++.+. +|...|+++.|+ ++..+++++.|.++++.-+++++. +.+..+|.+.|+...|.+ +|..+++++.||. |
T Consensus 298 lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~---LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgt-v 372 (508)
T KOG0275|consen 298 LRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC---LKEFRGHSSYVNEATFTD-DGHHIISASSDGT-V 372 (508)
T ss_pred HHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh---HHHhcCccccccceEEcC-CCCeEEEecCCcc-E
Confidence 99887 899999999999 999999999999999999999984 555668888999999999 9999999999999 9
Q ss_pred EEEECCCCCCCeeeec-----------------------------------------------ccccceeEEEEecCCCC
Q 035558 156 VVLDIRFPTLPVVELQ-----------------------------------------------RHQASVNAIAWAPHSSC 188 (253)
Q Consensus 156 ~~~d~~~~~~~~~~~~-----------------------------------------------~~~~~i~~~~~~~~~~~ 188 (253)
++|+..+... +.+++ ...+..-+.+.+|.|+
T Consensus 373 kvW~~KtteC-~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGe- 450 (508)
T KOG0275|consen 373 KVWHGKTTEC-LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGE- 450 (508)
T ss_pred EEecCcchhh-hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCc-
Confidence 9999876431 11111 0112334566788884
Q ss_pred eEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 189 HICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 189 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
++.+.++|+.++.|.+.++.... .+.-|...+..++-+|..+.+++-+.|+.+++|+
T Consensus 451 wiYcigED~vlYCF~~~sG~LE~-------tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 451 WIYCIGEDGVLYCFSVLSGKLER-------TLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEEEccCcEEEEEEeecCceee-------eeecccccccccccCcccchhhhhcccchhhhcC
Confidence 89999999999999998887543 6677888999999999988788899999999996
No 87
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=2.9e-28 Score=179.22 Aligned_cols=168 Identities=15% Similarity=0.242 Sum_probs=151.6
Q ss_pred ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCC
Q 035558 28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADG 106 (253)
Q Consensus 28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg 106 (253)
....+|..|+ ++|++++.+ |+.+++++|+.|..-.+|+..++.....+.+|+..|+++.|+ ++.+||||..+|
T Consensus 55 dS~~tF~~H~-----~svFavsl~-P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG 128 (399)
T KOG0296|consen 55 DSLVTFDKHT-----DSVFAVSLH-PNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSG 128 (399)
T ss_pred cceeehhhcC-----CceEEEEeC-CCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCc
Confidence 3467888999 999999999 599999999999999999999999999999999999999999 999999999999
Q ss_pred cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCC
Q 035558 107 SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHS 186 (253)
Q Consensus 107 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 186 (253)
.|++|+..++.....+. .....+.-+.|+| .+..|++|+.||. +..|.+.+... .+.+.+|..++++-.|.|+|
T Consensus 129 ~v~v~~~stg~~~~~~~---~e~~dieWl~WHp-~a~illAG~~DGs-vWmw~ip~~~~-~kv~~Gh~~~ct~G~f~pdG 202 (399)
T KOG0296|consen 129 KVLVFKVSTGGEQWKLD---QEVEDIEWLKWHP-RAHILLAGSTDGS-VWMWQIPSQAL-CKVMSGHNSPCTCGEFIPDG 202 (399)
T ss_pred cEEEEEcccCceEEEee---cccCceEEEEecc-cccEEEeecCCCc-EEEEECCCcce-eeEecCCCCCcccccccCCC
Confidence 99999999987544443 2333788899999 9999999999999 99999998643 78899999999999999999
Q ss_pred CCeEEEecCCCcEEEEeccCCC
Q 035558 187 SCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 187 ~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
+.++++..||+|++|++.++.
T Consensus 203 -Kr~~tgy~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 203 -KRILTGYDDGTIIVWNPKTGQ 223 (399)
T ss_pred -ceEEEEecCceEEEEecCCCc
Confidence 699999999999999998875
No 88
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.8e-29 Score=180.14 Aligned_cols=223 Identities=20% Similarity=0.352 Sum_probs=192.1
Q ss_pred ceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEecc------C---
Q 035558 6 DLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE------R--- 74 (253)
Q Consensus 6 ~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~------~--- 74 (253)
.++.+++ | +.+||.++.+ +++..+.+|. +.|+++.|+ +.+.++++++.|++..||... .
T Consensus 161 pi~gtASADhTA~iWs~Esg----~CL~~Y~GH~-----GSVNsikfh-~s~~L~lTaSGD~taHIW~~av~~~vP~~~a 230 (481)
T KOG0300|consen 161 PICGTASADHTARIWSLESG----ACLATYTGHT-----GSVNSIKFH-NSGLLLLTASGDETAHIWKAAVNWEVPSNNA 230 (481)
T ss_pred cceeecccccceeEEeeccc----cceeeecccc-----cceeeEEec-cccceEEEccCCcchHHHHHhhcCcCCCCCC
Confidence 3666766 5 9999999999 9999999999 999999999 889999999999999999721 1
Q ss_pred -------------------------------ceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeee
Q 035558 75 -------------------------------EAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTII 122 (253)
Q Consensus 75 -------------------------------~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 122 (253)
..++..+.+|...|.+..|. .++.+++++.|.+-.+||++++. ++
T Consensus 231 ~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge---~v 307 (481)
T KOG0300|consen 231 PSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE---VV 307 (481)
T ss_pred CCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc---ee
Confidence 01345677899999999999 99999999999999999999998 45
Q ss_pred eccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEE
Q 035558 123 YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIW 202 (253)
Q Consensus 123 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iw 202 (253)
....+|+...+.++-+| ..+++++++.|.. .++||++..-..+..|++|...|+++.|..+. .+++|+.|.+|++|
T Consensus 308 ~~LtGHd~ELtHcstHp-tQrLVvTsSrDtT-FRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd--~vVSgSDDrTvKvW 383 (481)
T KOG0300|consen 308 NILTGHDSELTHCSTHP-TQRLVVTSSRDTT-FRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD--RVVSGSDDRTVKVW 383 (481)
T ss_pred ccccCcchhccccccCC-cceEEEEeccCce-eEeccchhhcceeeeecccccceeEEEEecCC--ceeecCCCceEEEe
Confidence 55567888999999999 8899999999988 99999996656688999999999999999885 69999999999999
Q ss_pred eccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEE-cCCcEEEEEC
Q 035558 203 DLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA-FSTKLQILRV 253 (253)
Q Consensus 203 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~vw~l 253 (253)
|+++...|. .......+++.++.+..++ +++.- .+..+++|+|
T Consensus 384 dLrNMRspl-------ATIRtdS~~NRvavs~g~~-iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 384 DLRNMRSPL-------ATIRTDSPANRVAVSKGHP-IIAIPHDNRQVRLFDL 427 (481)
T ss_pred eeccccCcc-------eeeecCCccceeEeecCCc-eEEeccCCceEEEEec
Confidence 999988776 5566788999999998877 55554 4567999986
No 89
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.5e-29 Score=182.82 Aligned_cols=207 Identities=16% Similarity=0.256 Sum_probs=169.4
Q ss_pred eeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc------------------eeeeeeecccccEEEEE
Q 035558 31 SLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE------------------AVDTQLIAHDKEVYDIA 92 (253)
Q Consensus 31 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~------------------~~~~~~~~~~~~v~~~~ 92 (253)
..+..|+ +++.+.+|+ ++|.++++|+.|-.|+|.|++.. -.++++-.|..+|+++.
T Consensus 106 ~ylt~HK-----~~cR~aafs-~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~ 179 (430)
T KOG0640|consen 106 KYLTSHK-----SPCRAAAFS-PDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLD 179 (430)
T ss_pred EEEeecc-----cceeeeeeC-CCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccccee
Confidence 4466777 899999999 99999999999999999998731 14566778999999999
Q ss_pred ec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCe--ee
Q 035558 93 WG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPV--VE 169 (253)
Q Consensus 93 ~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~--~~ 169 (253)
|+ ....|++++.|++|++||+......+-.... ....+|.++.|+| .|.++++|..-.. +++||+.+.+.-+ ..
T Consensus 180 FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHP-sGefllvgTdHp~-~rlYdv~T~QcfvsanP 256 (430)
T KOG0640|consen 180 FHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHP-SGEFLLVGTDHPT-LRLYDVNTYQCFVSANP 256 (430)
T ss_pred ecchhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecC-CCceEEEecCCCc-eeEEeccceeEeeecCc
Confidence 99 9999999999999999999876432222222 2223899999999 9999999887777 9999999865211 12
Q ss_pred ecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC-CCceeEEEEcCCCCceEEEEcCCcE
Q 035558 170 LQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA-GAEIEQLQWSSSQPDWVAIAFSTKL 248 (253)
Q Consensus 170 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~i 248 (253)
-..|.+.|+++.+++.+ ++.++++.||.|++||=-+..... .....| +..|.+..|..+++++++.|.|..+
T Consensus 257 d~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~------t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~v 329 (430)
T KOG0640|consen 257 DDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVR------TIGNAHGGSEVCSAVFTKNGKYILSSGKDSTV 329 (430)
T ss_pred ccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHH------HHHhhcCCceeeeEEEccCCeEEeecCCccee
Confidence 34688999999999999 699999999999999987766443 233345 5689999999999999999999999
Q ss_pred EEEEC
Q 035558 249 QILRV 253 (253)
Q Consensus 249 ~vw~l 253 (253)
++|++
T Consensus 330 kLWEi 334 (430)
T KOG0640|consen 330 KLWEI 334 (430)
T ss_pred eeeee
Confidence 99986
No 90
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=5.5e-28 Score=170.61 Aligned_cols=225 Identities=18% Similarity=0.292 Sum_probs=184.9
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
-+|..|++++ + ++++|+++.. ........++|. +.|-.++|+|++.+++++++.|.+|++||.+.+++...
T Consensus 30 ~~g~~lasgs~dktv~v~n~e~~--r~~~~~~~~gh~-----~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~ 102 (313)
T KOG1407|consen 30 CDGTKLASGSFDKTVSVWNLERD--RFRKELVYRGHT-----DSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTAR 102 (313)
T ss_pred ccCceeeecccCCceEEEEecch--hhhhhhcccCCC-----cchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEE
Confidence 3678889888 6 9999999874 223334566777 88999999999999999999999999999999999988
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
.....+.+. +.|+ ++++++.++.|..|...|.++.+.... ......+..+.|+. +++++......|. |.|..
T Consensus 103 i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~----~~~~~e~ne~~w~~-~nd~Fflt~GlG~-v~ILs 175 (313)
T KOG1407|consen 103 IETKGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYKIVNE----EQFKFEVNEISWNN-SNDLFFLTNGLGC-VEILS 175 (313)
T ss_pred eeccCcceE-EEEcCCCCEEEEecCcccEEEEEecccceeeh----hcccceeeeeeecC-CCCEEEEecCCce-EEEEe
Confidence 875555554 6788 999999999999999999998763221 12233678899985 6666666666677 99988
Q ss_pred CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558 160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW 239 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 239 (253)
....+ |+..+++|.....|+.|+|+| ++||+|+.|..+.+||+...-... .+..+.-+|..++|+.+|++|
T Consensus 176 ypsLk-pv~si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~ELiC~R-------~isRldwpVRTlSFS~dg~~l 246 (313)
T KOG1407|consen 176 YPSLK-PVQSIKAHPSNCICIEFDPDG-RYFATGSADALVSLWDVDELICER-------CISRLDWPVRTLSFSHDGRML 246 (313)
T ss_pred ccccc-cccccccCCcceEEEEECCCC-ceEeeccccceeeccChhHhhhhe-------eeccccCceEEEEeccCccee
Confidence 87644 699999999999999999999 799999999999999998876543 667789999999999999988
Q ss_pred EEEEcCCcEEE
Q 035558 240 VAIAFSTKLQI 250 (253)
Q Consensus 240 ~~~~~~~~i~v 250 (253)
++++.|..|-|
T Consensus 247 ASaSEDh~IDI 257 (313)
T KOG1407|consen 247 ASASEDHFIDI 257 (313)
T ss_pred eccCccceEEe
Confidence 88888877654
No 91
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.6e-27 Score=193.22 Aligned_cols=218 Identities=19% Similarity=0.309 Sum_probs=159.8
Q ss_pred CCCCCceEEeec-C-cEEEEEccCCccc----cceeeeecCCCCccccCCeeEEEecCCCCC-EEEEEeCCCeEEEEecc
Q 035558 1 ECQKPDLLATSS-D-FLRVWRISDEDRR----VELKSLLNGNKNSEYCGPLTSFDWNEAEPR-RIGTSSIDTTCTIWDIE 73 (253)
Q Consensus 1 sp~~~~~l~~~~-~-~v~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~ 73 (253)
+|.++.+|++|+ | .|++|++..+... ..+...+.+|. ..|.+++|+ |++. .|++++.|++|++||++
T Consensus 83 sP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~-----~~V~sVaf~-P~g~~iLaSgS~DgtIrIWDl~ 156 (568)
T PTZ00420 83 NPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK-----KKISIIDWN-PMNYYIMCSSGFDSFVNIWDIE 156 (568)
T ss_pred cCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC-----CcEEEEEEC-CCCCeEEEEEeCCCeEEEEECC
Confidence 466678899988 4 9999999763111 12345678888 899999999 5554 56799999999999999
Q ss_pred CceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeE-----EEeeCCCCCEEEE
Q 035558 74 REAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVR-----LGWNKQDPRYMAT 147 (253)
Q Consensus 74 ~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~~l~~ 147 (253)
+++....+. |...|.+++|+ ++.+|++++.|+.|++||+++++....+ ..|.+.+.. ..|++ ++.+|++
T Consensus 157 tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl---~gH~g~~~s~~v~~~~fs~-d~~~IlT 231 (568)
T PTZ00420 157 NEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF---HIHDGGKNTKNIWIDGLGG-DDNYILS 231 (568)
T ss_pred CCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE---ecccCCceeEEEEeeeEcC-CCCEEEE
Confidence 988776665 66789999999 9999999999999999999998744333 344444332 23456 7888888
Q ss_pred EEeCC---CeEEEEECCCCCCCeeeecccc--cceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeecc
Q 035558 148 IIMDS---AKVVVLDIRFPTLPVVELQRHQ--ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYT 222 (253)
Q Consensus 148 ~~~~~---~~i~~~d~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 222 (253)
++.++ +.|++||++....++..+..+. +.+.. .|.++.+.++++|+.|++|++|++..+.... .....
T Consensus 232 tG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p-~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~------l~~~~ 304 (568)
T PTZ00420 232 TGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIP-HYDESTGLIYLIGKGDGNCRYYQHSLGSIRK------VNEYK 304 (568)
T ss_pred EEcCCCCccEEEEEECCCCCCceEEEEecCCccceEE-eeeCCCCCEEEEEECCCeEEEEEccCCcEEe------ecccc
Confidence 88775 2499999997666666554322 22222 3444433789999999999999998754221 23344
Q ss_pred CCCceeEEEEcCCC
Q 035558 223 AGAEIEQLQWSSSQ 236 (253)
Q Consensus 223 ~~~~v~~~~~~~~~ 236 (253)
+..+..+++|.|..
T Consensus 305 s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 305 SCSPFRSFGFLPKQ 318 (568)
T ss_pred cCCCccceEEcccc
Confidence 67888899999974
No 92
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.7e-29 Score=188.39 Aligned_cols=228 Identities=18% Similarity=0.264 Sum_probs=185.3
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
+...|++++ | .|++|+.... ......++.+.. ++|+++.|. +++..+++++.|+.+++|++...+...++
T Consensus 186 ~sdtlatgg~Dr~Ik~W~v~~~--k~~~~~tLaGs~-----g~it~~d~d-~~~~~~iAas~d~~~r~Wnvd~~r~~~TL 257 (459)
T KOG0288|consen 186 NSDTLATGGSDRIIKLWNVLGE--KSELISTLAGSL-----GNITSIDFD-SDNKHVIAASNDKNLRLWNVDSLRLRHTL 257 (459)
T ss_pred Ccchhhhcchhhhhhhhhcccc--hhhhhhhhhccC-----CCcceeeec-CCCceEEeecCCCceeeeeccchhhhhhh
Confidence 446778877 6 9999999874 245788888887 899999999 77888888999999999999999999999
Q ss_pred ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558 82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160 (253)
Q Consensus 82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~ 160 (253)
.+|++.|+++.|. ....+++|+.|.+|++||+....+.+.+... ..+..+..+ ...++++..|+. |++||.
T Consensus 258 sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~----S~cnDI~~~---~~~~~SgH~Dkk-vRfwD~ 329 (459)
T KOG0288|consen 258 SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG----SQCNDIVCS---ISDVISGHFDKK-VRFWDI 329 (459)
T ss_pred cccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc----ccccceEec---ceeeeecccccc-eEEEec
Confidence 9999999999999 5556999999999999999987765554332 255556654 467888888998 999999
Q ss_pred CCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE
Q 035558 161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 240 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 240 (253)
+.... ......+. .|+++..++++ ..|.+++.|.++.+.|+++..... ......+.-....+.+.|||++.|++
T Consensus 330 Rs~~~-~~sv~~gg-~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~eI~~---~~sA~g~k~asDwtrvvfSpd~~Yva 403 (459)
T KOG0288|consen 330 RSADK-TRSVPLGG-RVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKEIRQ---TFSAEGFKCASDWTRVVFSPDGSYVA 403 (459)
T ss_pred cCCce-eeEeecCc-ceeeEeeccCC-eEEeeecCCCceeeeecccccEEE---EeeccccccccccceeEECCCCceee
Confidence 98663 66666654 89999999999 688888999999999999876432 00011112234489999999999999
Q ss_pred EEEcCCcEEEEEC
Q 035558 241 AIAFSTKLQILRV 253 (253)
Q Consensus 241 ~~~~~~~i~vw~l 253 (253)
+|+.|+.|+||++
T Consensus 404 AGS~dgsv~iW~v 416 (459)
T KOG0288|consen 404 AGSADGSVYIWSV 416 (459)
T ss_pred eccCCCcEEEEEc
Confidence 9999999999985
No 93
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.1e-29 Score=207.47 Aligned_cols=234 Identities=19% Similarity=0.361 Sum_probs=194.2
Q ss_pred eEEeecC--cEEEEEccC--CccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558 7 LLATSSD--FLRVWRISD--EDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI 82 (253)
Q Consensus 7 ~l~~~~~--~v~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 82 (253)
+||+|.+ .|.+||... .......+.+...|+ ++|..+.|++..+++||+|+.||.|.|||+...+.-..+.
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~-----G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~ 156 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHT-----GPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG 156 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccC-----CceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC
Confidence 5777764 999999876 235567788888898 9999999997778899999999999999998755433331
Q ss_pred --cccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC--eEE
Q 035558 83 --AHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA--KVV 156 (253)
Q Consensus 83 --~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~--~i~ 156 (253)
...+.|.+++|+ ....|++++.+|++.|||++..+.+..+... .....+..++|||+....+++++.|.+ .|.
T Consensus 157 ~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~-~~~~~~S~l~WhP~~aTql~~As~dd~~Pviq 235 (1049)
T KOG0307|consen 157 SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT-PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQ 235 (1049)
T ss_pred CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccC-CCccceeeeeeCCCCceeeeeecCCCCCceeE
Confidence 245789999999 7789999999999999999988643333222 222468899999988889999888774 599
Q ss_pred EEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC
Q 035558 157 VLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ 236 (253)
Q Consensus 157 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 236 (253)
+||+|....+++.+.+|...|.+|.|++.++.+|++++.|+.|.+|+.++++... .+...++.+..+.|.|..
T Consensus 236 lWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~-------~~p~~~nW~fdv~w~pr~ 308 (1049)
T KOG0307|consen 236 LWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG-------ELPAQGNWCFDVQWCPRN 308 (1049)
T ss_pred eecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee-------ecCCCCcceeeeeecCCC
Confidence 9999998889999999999999999999987899999999999999999987554 555578899999999998
Q ss_pred CceE-EEEcCCcEEEEEC
Q 035558 237 PDWV-AIAFSTKLQILRV 253 (253)
Q Consensus 237 ~~~~-~~~~~~~i~vw~l 253 (253)
+.++ +++.||.|.|+.+
T Consensus 309 P~~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 309 PSVMAAASFDGKISIYSL 326 (1049)
T ss_pred cchhhhheeccceeeeee
Confidence 8544 6888999999864
No 94
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=6.6e-28 Score=173.18 Aligned_cols=211 Identities=16% Similarity=0.272 Sum_probs=167.5
Q ss_pred eecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce------------e---eeeeecccccEEEEEec--
Q 035558 32 LLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA------------V---DTQLIAHDKEVYDIAWG-- 94 (253)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------------~---~~~~~~~~~~v~~~~~~-- 94 (253)
..+.|. +.|+++...+..++++++|+.||.|.+||++... + ...-.+|+-.|.++.|-
T Consensus 38 ~~r~Hg-----GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~ 112 (397)
T KOG4283|consen 38 FVRPHG-----GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI 112 (397)
T ss_pred eeccCC-----CccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee
Confidence 345566 8999999998899999999999999999998643 1 01123688899999998
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCC--CEEEEEEeCCCeEEEEECCCCCCCeeeecc
Q 035558 95 GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDP--RYMATIIMDSAKVVVLDIRFPTLPVVELQR 172 (253)
Q Consensus 95 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 172 (253)
+...|.+++.|.++++||..+.+....+ .-++.|++-+|+|-.. .++|+|..+-. |++.|+..+.. -+.+.+
T Consensus 113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F----~me~~VYshamSp~a~sHcLiA~gtr~~~-VrLCDi~SGs~-sH~LsG 186 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTNTLQEAVDF----KMEGKVYSHAMSPMAMSHCLIAAGTRDVQ-VRLCDIASGSF-SHTLSG 186 (397)
T ss_pred cCceeecccccceEEEeecccceeeEEe----ecCceeehhhcChhhhcceEEEEecCCCc-EEEEeccCCcc-eeeecc
Confidence 8899999999999999999988743322 2334788888888433 34555555555 99999998774 899999
Q ss_pred cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC------CCCCC--CeeeccCCCceeEEEEcCCCCceEEEEc
Q 035558 173 HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV------EGGLD--PILAYTAGAEIEQLQWSSSQPDWVAIAF 244 (253)
Q Consensus 173 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 244 (253)
|...|.++.|+|..+..|++|+.||.|++||++....-+ ..... ......|.+.+++++|+.++.++++++.
T Consensus 187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT 266 (397)
T ss_pred ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence 999999999999988889999999999999998763111 00011 1234578999999999999999999999
Q ss_pred CCcEEEEEC
Q 035558 245 STKLQILRV 253 (253)
Q Consensus 245 ~~~i~vw~l 253 (253)
|+.+++|++
T Consensus 267 d~r~r~wn~ 275 (397)
T KOG4283|consen 267 DDRIRVWNM 275 (397)
T ss_pred ccceEEeec
Confidence 999999974
No 95
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=2.1e-27 Score=195.71 Aligned_cols=237 Identities=18% Similarity=0.320 Sum_probs=192.0
Q ss_pred CCCceEEeecC--cEEEEEccCC--------------ccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCe
Q 035558 3 QKPDLLATSSD--FLRVWRISDE--------------DRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTT 66 (253)
Q Consensus 3 ~~~~~l~~~~~--~v~iw~~~~~--------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 66 (253)
+||.+||+|+| .|.||..... .+.++....+.+|. ..|..++|+ |++.+|++++.|++
T Consensus 79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~-----~DV~Dv~Ws-p~~~~lvS~s~Dns 152 (942)
T KOG0973|consen 79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD-----SDVLDVNWS-PDDSLLVSVSLDNS 152 (942)
T ss_pred CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCC-----CccceeccC-CCccEEEEecccce
Confidence 68999999997 8899998730 23467888999999 899999999 79999999999999
Q ss_pred EEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCC---CCCCeeEEEeeCCCC
Q 035558 67 CTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSE---PDTPLVRLGWNKQDP 142 (253)
Q Consensus 67 i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~ 142 (253)
|.+||..+.+.+..+++|.+.|..+.|. -|++|++-+.|++|++|++..-...+.+..+.. .......+.|+| +|
T Consensus 153 Viiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP-DG 231 (942)
T KOG0973|consen 153 VIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP-DG 231 (942)
T ss_pred EEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC-Cc
Confidence 9999999999999999999999999999 999999999999999999776554444443322 234678899999 99
Q ss_pred CEEEEEEeCC---CeEEEEECCCCCCCeeeecccccceeEEEEecC--------C----CC----eEEEecCCCcEEEEe
Q 035558 143 RYMATIIMDS---AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPH--------S----SC----HICTAGDDSQALIWD 203 (253)
Q Consensus 143 ~~l~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~--------~----~~----~l~~~~~dg~i~iwd 203 (253)
.+|++...-+ ..+.|.+-.+.+ .-..+.+|.+++.+++|+|. | +. .+|+|+.|++|.||.
T Consensus 232 ~~las~nA~n~~~~~~~IieR~tWk-~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~ 310 (942)
T KOG0973|consen 232 HHLASPNAVNGGKSTIAIIERGTWK-VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWN 310 (942)
T ss_pred CeecchhhccCCcceeEEEecCCce-eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEe
Confidence 9999865322 247788775544 36788899999999999981 1 11 578999999999999
Q ss_pred ccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 204 LSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
....+... ....-....|.+++|+|+|-.|++++.||.|.++++
T Consensus 311 T~~~RPl~------vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~F 354 (942)
T KOG0973|consen 311 TALPRPLF------VIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHF 354 (942)
T ss_pred cCCCCchh------hhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEc
Confidence 86544221 111123778999999999999999999999998763
No 96
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=7.7e-29 Score=180.41 Aligned_cols=199 Identities=15% Similarity=0.262 Sum_probs=168.3
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee--------cccccEEEEEec-CCCeEEEEeCCCcEEEEEc
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI--------AHDKEVYDIAWG-GVGVFASVSADGSVRVFDL 113 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~ 113 (253)
.-+-|..|+ |++++|++|+.||.|.+||..+|+....++ -+..+|.|+.|+ +...+++|+.||.|++|.+
T Consensus 214 Sh~EcA~FS-PDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 214 SHVECARFS-PDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred cchhheeeC-CCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 567789999 999999999999999999999998655443 367899999999 9999999999999999999
Q ss_pred CCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEe
Q 035558 114 RDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTA 193 (253)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 193 (253)
+++.+.+.+. ..|...|+++.|+. ++..+++++.|.. +++--+.+++ .++++++|...|+...|.++| ..++++
T Consensus 293 ~tG~ClRrFd--rAHtkGvt~l~FSr-D~SqiLS~sfD~t-vRiHGlKSGK-~LKEfrGHsSyvn~a~ft~dG-~~iisa 366 (508)
T KOG0275|consen 293 ETGQCLRRFD--RAHTKGVTCLSFSR-DNSQILSASFDQT-VRIHGLKSGK-CLKEFRGHSSYVNEATFTDDG-HHIISA 366 (508)
T ss_pred ecchHHHHhh--hhhccCeeEEEEcc-Ccchhhcccccce-EEEeccccch-hHHHhcCccccccceEEcCCC-CeEEEe
Confidence 9998655443 25667999999999 8899999999998 9999999876 599999999999999999999 699999
Q ss_pred cCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC-ceEEEEcCCcEEEEEC
Q 035558 194 GDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP-DWVAIAFSTKLQILRV 253 (253)
Q Consensus 194 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~vw~l 253 (253)
+.||+|++|+..+.+... .....+...+|+++-.-|.++ .++.+...+.+.|.++
T Consensus 367 SsDgtvkvW~~KtteC~~-----Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~ 422 (508)
T KOG0275|consen 367 SSDGTVKVWHGKTTECLS-----TFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM 422 (508)
T ss_pred cCCccEEEecCcchhhhh-----hccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec
Confidence 999999999999877554 123334667888888777654 5667777888877654
No 97
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=8.1e-27 Score=168.17 Aligned_cols=212 Identities=23% Similarity=0.305 Sum_probs=163.3
Q ss_pred CCCCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558 1 ECQKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT 79 (253)
Q Consensus 1 sp~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 79 (253)
+|..+.+|+++-| ++++|++... .+...+ .|. .++++++|. +...+++|+.||.|+.+|+.+++...
T Consensus 22 ~~~~~~LLvssWDgslrlYdv~~~----~l~~~~-~~~-----~plL~c~F~--d~~~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 22 SPSSSDLLVSSWDGSLRLYDVPAN----SLKLKF-KHG-----APLLDCAFA--DESTIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred cCcCCcEEEEeccCcEEEEeccch----hhhhhe-ecC-----Cceeeeecc--CCceEEEeccCceEEEEEecCCccee
Confidence 3677888888888 9999999884 444444 355 799999997 47789999999999999999887554
Q ss_pred eeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558 80 QLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL 158 (253)
Q Consensus 80 ~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~ 158 (253)
+..|..+|.++.+. ..+.+++|+.|++|++||.+........ .....|.++.. .++.|++|+.+.. +.+|
T Consensus 90 -igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~----d~~kkVy~~~v---~g~~LvVg~~~r~-v~iy 160 (323)
T KOG1036|consen 90 -IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF----DQGKKVYCMDV---SGNRLVVGTSDRK-VLIY 160 (323)
T ss_pred -eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccc----ccCceEEEEec---cCCEEEEeecCce-EEEE
Confidence 45699999999999 8889999999999999999974321111 22226777765 4667777777777 8888
Q ss_pred ECCCCCCC-----------------------------------------------eeeecccc---------cceeEEEE
Q 035558 159 DIRFPTLP-----------------------------------------------VVELQRHQ---------ASVNAIAW 182 (253)
Q Consensus 159 d~~~~~~~-----------------------------------------------~~~~~~~~---------~~i~~~~~ 182 (253)
|+|+...+ ...++.|. -+|++++|
T Consensus 161 DLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F 240 (323)
T KOG1036|consen 161 DLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF 240 (323)
T ss_pred EcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence 88765431 12233443 27999999
Q ss_pred ecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558 183 APHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA 241 (253)
Q Consensus 183 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 241 (253)
+|-. ..|+||+.||.|.+||+.+.+... .+......|.+++|+.+|..|+.
T Consensus 241 hp~~-~tfaTgGsDG~V~~Wd~~~rKrl~-------q~~~~~~SI~slsfs~dG~~LAi 291 (323)
T KOG1036|consen 241 HPIH-GTFATGGSDGIVNIWDLFNRKRLK-------QLAKYETSISSLSFSMDGSLLAI 291 (323)
T ss_pred cccc-ceEEecCCCceEEEccCcchhhhh-------hccCCCCceEEEEeccCCCeEEE
Confidence 9987 599999999999999999887654 55555678999999999985543
No 98
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.3e-26 Score=167.21 Aligned_cols=242 Identities=19% Similarity=0.307 Sum_probs=184.5
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCC-CCCEEEEEeCCCeEEEEeccCc-----
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEA-EPRRIGTSSIDTTCTIWDIERE----- 75 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~----- 75 (253)
-|+.+|+|+ | +|+|||.+.....+.+....+.|. +.|..+.|.+| -|+.+|+++.|+++.||.-...
T Consensus 24 ~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~-----~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~ 98 (361)
T KOG2445|consen 24 YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHD-----GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAH 98 (361)
T ss_pred cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecC-----CcEEEEEecCccccceEEEEecCCceeeeeecccccccc
Confidence 467788877 6 999999877667788889999999 99999999655 4889999999999999976321
Q ss_pred ----eeeeeeecccccEEEEEec---CCCeEEEEeCCCcEEEEEcCCCCCee----------eeeccCCCCCCeeEEEee
Q 035558 76 ----AVDTQLIAHDKEVYDIAWG---GVGVFASVSADGSVRVFDLRDKEHST----------IIYESSEPDTPLVRLGWN 138 (253)
Q Consensus 76 ----~~~~~~~~~~~~v~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~----------~~~~~~~~~~~i~~~~~~ 138 (253)
....++......|++++|. -|-.+++++.||++|||+.-...... .+..+..+..+..|+.|+
T Consensus 99 ~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn 178 (361)
T KOG2445|consen 99 GRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWN 178 (361)
T ss_pred cceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeec
Confidence 1344566678899999998 67799999999999999876543211 111233455688999999
Q ss_pred CC--CCCEEEEEEeC-----CCeEEEEECCCCC---CCeeeecccccceeEEEEecCCC---CeEEEecCCCcEEEEecc
Q 035558 139 KQ--DPRYMATIIMD-----SAKVVVLDIRFPT---LPVVELQRHQASVNAIAWAPHSS---CHICTAGDDSQALIWDLS 205 (253)
Q Consensus 139 ~~--~~~~l~~~~~~-----~~~i~~~d~~~~~---~~~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~dg~i~iwd~~ 205 (253)
|. ...+||+|+.+ +. ++||...... ..+.++..|..+|+.++|.|+-. ++|++++.|| |+||.++
T Consensus 179 ~sr~~~p~iAvgs~e~a~~~~~-~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~ 256 (361)
T KOG2445|consen 179 PSRMHEPLIAVGSDEDAPHLNK-VKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVK 256 (361)
T ss_pred cccccCceEEEEcccCCccccc-eEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEe
Confidence 74 24678888766 24 8888765543 23567789999999999999643 3789999999 9999998
Q ss_pred CCCCCCCC-------------CCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 206 SMGQPVEG-------------GLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 206 ~~~~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
....+..+ ......+.+|..+|..+.|+-.|..|.+.|.||.+|+|+
T Consensus 257 ~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 257 VARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred eccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence 53322100 011223557999999999999999888999999999997
No 99
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.4e-28 Score=180.87 Aligned_cols=208 Identities=17% Similarity=0.356 Sum_probs=170.8
Q ss_pred eeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCcE
Q 035558 29 LKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSV 108 (253)
Q Consensus 29 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i 108 (253)
.+..+.+|. +.|.+++=+|..-..+++|+.||.|++||+.+.++...+++|.+.|..|++.. ..+++++.|.+|
T Consensus 58 Fv~~L~gHr-----dGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtv 131 (433)
T KOG0268|consen 58 FVGSLDGHR-----DGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTV 131 (433)
T ss_pred chhhccccc-----cccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCCcce
Confidence 345678898 89999999965558899999999999999999999999999999999999964 778899999999
Q ss_pred EEEEcCCCCCeee---------------------------ee---------ccCCCCCCeeEEEeeCCCCCEEEEEEeCC
Q 035558 109 RVFDLRDKEHSTI---------------------------IY---------ESSEPDTPLVRLGWNKQDPRYMATIIMDS 152 (253)
Q Consensus 109 ~i~d~~~~~~~~~---------------------------~~---------~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 152 (253)
+.|.+..+. ... ++ ...-....|.++.|+|....+|++++.|+
T Consensus 132 K~wk~~~~p-~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDr 210 (433)
T KOG0268|consen 132 KQWKIDGPP-LHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDR 210 (433)
T ss_pred eeeeccCCc-ceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCC
Confidence 999854321 000 00 01111236788999997778888888999
Q ss_pred CeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEE
Q 035558 153 AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQW 232 (253)
Q Consensus 153 ~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 232 (253)
+ |.+||+|+.. |++.+.. ...-+.++|+|.+ ..+++|++|..++.||++....|. ....+|.+.|.++.|
T Consensus 211 s-IvLyD~R~~~-Pl~KVi~-~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~p~------~v~~dhvsAV~dVdf 280 (433)
T KOG0268|consen 211 S-IVLYDLRQAS-PLKKVIL-TMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSRPL------NVHKDHVSAVMDVDF 280 (433)
T ss_pred c-eEEEecccCC-ccceeee-eccccceecCccc-cceeeccccccceehhhhhhcccc------hhhcccceeEEEecc
Confidence 8 9999999866 4554432 3445789999976 689999999999999999998776 677899999999999
Q ss_pred cCCCCceEEEEcCCcEEEEEC
Q 035558 233 SSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 233 ~~~~~~~~~~~~~~~i~vw~l 253 (253)
+|.|+.+++++.|..|+||.+
T Consensus 281 sptG~EfvsgsyDksIRIf~~ 301 (433)
T KOG0268|consen 281 SPTGQEFVSGSYDKSIRIFPV 301 (433)
T ss_pred CCCcchhccccccceEEEeec
Confidence 999999999999999999974
No 100
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.1e-26 Score=164.26 Aligned_cols=221 Identities=16% Similarity=0.275 Sum_probs=174.1
Q ss_pred ceEEeec--C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558 6 DLLATSS--D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI 82 (253)
Q Consensus 6 ~~l~~~~--~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 82 (253)
.++.+.. | +||..++.++ +.++.+.||. ..|++++.+ |-++.+++++.|++|++||++..++...+.
T Consensus 70 ~~i~sStk~d~tIryLsl~dN----kylRYF~GH~-----~~V~sL~~s-P~~d~FlS~S~D~tvrLWDlR~~~cqg~l~ 139 (311)
T KOG1446|consen 70 TVIHSSTKEDDTIRYLSLHDN----KYLRYFPGHK-----KRVNSLSVS-PKDDTFLSSSLDKTVRLWDLRVKKCQGLLN 139 (311)
T ss_pred eEEEccCCCCCceEEEEeecC----ceEEEcCCCC-----ceEEEEEec-CCCCeEEecccCCeEEeeEecCCCCceEEe
Confidence 3444444 4 9999999998 9999999999 899999999 566889999999999999999887776665
Q ss_pred cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCC-Ce-eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 83 AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKE-HS-TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 83 ~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
....+| .+|. .|-++|++...+.|++||+|.-. .+ ..+..........+.+.|+| +|++|+.+...+. +++.|
T Consensus 140 ~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~-~~~lD 215 (311)
T KOG1446|consen 140 LSGRPI--AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASF-IYLLD 215 (311)
T ss_pred cCCCcc--eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCc-EEEEE
Confidence 444444 6888 88899999888899999999753 22 22222224456899999999 9999999998888 99999
Q ss_pred CCCCCCCeeeecccccc---eeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeecc-CCCceeEEEEcCC
Q 035558 160 IRFPTLPVVELQRHQAS---VNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYT-AGAEIEQLQWSSS 235 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 235 (253)
.-.+.. ...+..+... -.+..|.|++ +++++|+.||+|.+|+++++.+.. ...+ +..++.++.|+|.
T Consensus 216 Af~G~~-~~tfs~~~~~~~~~~~a~ftPds-~Fvl~gs~dg~i~vw~~~tg~~v~-------~~~~~~~~~~~~~~fnP~ 286 (311)
T KOG1446|consen 216 AFDGTV-KSTFSGYPNAGNLPLSATFTPDS-KFVLSGSDDGTIHVWNLETGKKVA-------VLRGPNGGPVSCVRFNPR 286 (311)
T ss_pred ccCCcE-eeeEeeccCCCCcceeEEECCCC-cEEEEecCCCcEEEEEcCCCcEee-------EecCCCCCCccccccCCc
Confidence 988763 5566554432 2577899999 799999999999999999887654 4444 7899999999998
Q ss_pred CCceEEEEcCCcEEEE
Q 035558 236 QPDWVAIAFSTKLQIL 251 (253)
Q Consensus 236 ~~~~~~~~~~~~i~vw 251 (253)
.. ..++.+..+.+|
T Consensus 287 ~~--mf~sa~s~l~fw 300 (311)
T KOG1446|consen 287 YA--MFVSASSNLVFW 300 (311)
T ss_pred ee--eeeecCceEEEE
Confidence 54 444555667776
No 101
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=2.1e-26 Score=173.01 Aligned_cols=227 Identities=18% Similarity=0.231 Sum_probs=186.0
Q ss_pred CceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558 5 PDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI 82 (253)
Q Consensus 5 ~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 82 (253)
...+++++ + .|+||..... ........|. ++|+.+..+ +++.+|++++.||+..+.|++++..+....
T Consensus 273 ~~~v~~aSad~~i~vws~~~~----s~~~~~~~h~-----~~V~~ls~h-~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs 342 (506)
T KOG0289|consen 273 LDTVITASADEIIRVWSVPLS----SEPTSSRPHE-----EPVTGLSLH-PTGEYLLSASNDGTWAFSDISSGSQLTVVS 342 (506)
T ss_pred hhheeecCCcceEEeeccccc----cCcccccccc-----ccceeeeec-cCCcEEEEecCCceEEEEEccCCcEEEEEe
Confidence 33455555 6 9999999886 5667778898 899999999 899999999999999999999998776665
Q ss_pred c--ccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 83 A--HDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 83 ~--~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
. ..-.+++.+|+ ||.+|.+|..||.|++||+.++. .....++|.++|..++|+. +|.++++++.|+. |++||
T Consensus 343 ~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~---~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~-V~lwD 417 (506)
T KOG0289|consen 343 DETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT---NVAKFPGHTGPVKAISFSE-NGYWLATAADDGS-VKLWD 417 (506)
T ss_pred eccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc---ccccCCCCCCceeEEEecc-CceEEEEEecCCe-EEEEE
Confidence 3 23458999999 99999999999999999999887 4555567999999999999 9999999999999 99999
Q ss_pred CCCCCCCeeeeccc-ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCc
Q 035558 160 IRFPTLPVVELQRH-QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPD 238 (253)
Q Consensus 160 ~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 238 (253)
+|+.+. .+++... ...+.++.|.+.| ++|+.++.|=.|++++-.+.+-.. ...+..|.+..+.+.|....++
T Consensus 418 LRKl~n-~kt~~l~~~~~v~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k~W~~-----~~~~~~~sg~st~v~Fg~~aq~ 490 (506)
T KOG0289|consen 418 LRKLKN-FKTIQLDEKKEVNSLSFDQSG-TYLGIAGSDLQVYICKKKTKSWTE-----IKELADHSGLSTGVRFGEHAQY 490 (506)
T ss_pred ehhhcc-cceeeccccccceeEEEcCCC-CeEEeecceeEEEEEeccccccee-----eehhhhcccccceeeecccceE
Confidence 998764 5555432 2379999999999 799999887666666644433221 2355678889999999999988
Q ss_pred eEEEEcCCcEEEEEC
Q 035558 239 WVAIAFSTKLQILRV 253 (253)
Q Consensus 239 ~~~~~~~~~i~vw~l 253 (253)
+++++.|..++++.+
T Consensus 491 l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 491 LASTSMDAILRLYAL 505 (506)
T ss_pred EeeccchhheEEeec
Confidence 889999999888753
No 102
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=8.7e-27 Score=176.33 Aligned_cols=235 Identities=15% Similarity=0.166 Sum_probs=188.4
Q ss_pred CceEEeec--C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 5 PDLLATSS--D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 5 ~~~l~~~~--~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
+.+++++. . .+.+|.+... .......--. ++|.+++-+ ++|.+|+.|+..|.|++|.+.+|.++..+
T Consensus 50 ~~yllsaq~~rp~l~vw~i~k~----~~~~q~~v~P-----g~v~al~s~-n~G~~l~ag~i~g~lYlWelssG~LL~v~ 119 (476)
T KOG0646|consen 50 NEYLLSAQLKRPLLHVWEILKK----DQVVQYIVLP-----GPVHALASS-NLGYFLLAGTISGNLYLWELSSGILLNVL 119 (476)
T ss_pred hhheeeecccCccccccccCch----hhhhhhcccc-----cceeeeecC-CCceEEEeecccCcEEEEEeccccHHHHH
Confidence 34566665 3 8999998764 2111111112 689999998 89999999989999999999999999999
Q ss_pred ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCC------CCeeeeeccCCCCCCeeEEEeeCC-CCCEEEEEEeCCC
Q 035558 82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDK------EHSTIIYESSEPDTPLVRLGWNKQ-DPRYMATIIMDSA 153 (253)
Q Consensus 82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~~ 153 (253)
.+|-..|+++.|+ ++.+|++|+.||.|.+|.+..- ..+..+.....|.-+|+.+...+. ....+++++.|..
T Consensus 120 ~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t 199 (476)
T KOG0646|consen 120 SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRT 199 (476)
T ss_pred HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCce
Confidence 9999999999999 9999999999999999987431 134556666788889999998774 4578999999998
Q ss_pred eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC---------CCCCCCeeeccCC
Q 035558 154 KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV---------EGGLDPILAYTAG 224 (253)
Q Consensus 154 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---------~~~~~~~~~~~~~ 224 (253)
+++||+..+.. +..+. ....+.+++.+|.+ +.++.|+.+|.|.+.++....... ........+.+|.
T Consensus 200 -~k~wdlS~g~L-Llti~-fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~ 275 (476)
T KOG0646|consen 200 -IKLWDLSLGVL-LLTIT-FPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHE 275 (476)
T ss_pred -EEEEEecccee-eEEEe-cCCcceeEEEcccc-cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecccc
Confidence 99999998764 33333 35789999999998 799999999999999887654111 2223345677887
Q ss_pred C--ceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 225 A--EIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 225 ~--~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
+ +|++++.+-||..|++++.||.+.||++
T Consensus 276 ~~~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 276 NESAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred CCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 7 9999999999999999999999999985
No 103
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=3.8e-29 Score=198.13 Aligned_cols=215 Identities=20% Similarity=0.333 Sum_probs=185.7
Q ss_pred CceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558 5 PDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI 82 (253)
Q Consensus 5 ~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 82 (253)
.+.+++|+. .+-+|.+... ..+..+.+|. .+|.++.|+ ....+|++|+.+|+|++||++.++.++++.
T Consensus 40 ~r~~~~Gg~~~k~~L~~i~kp----~~i~S~~~he-----spIeSl~f~-~~E~LlaagsasgtiK~wDleeAk~vrtLt 109 (825)
T KOG0267|consen 40 SRSLVTGGEDEKVNLWAIGKP----NAITSLTGHE-----SPIESLTFD-TSERLLAAGSASGTIKVWDLEEAKIVRTLT 109 (825)
T ss_pred ceeeccCCCceeeccccccCC----chhheeeccC-----CcceeeecC-cchhhhcccccCCceeeeehhhhhhhhhhh
Confidence 467788875 7889999876 6666789999 999999999 888999999999999999999999999999
Q ss_pred cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558 83 AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR 161 (253)
Q Consensus 83 ~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~ 161 (253)
+|...+..+.|+ -+.++++|+.|+-+++||++...+.... .+|...+..++|+| +|.+++.++.|.. +++||+.
T Consensus 110 gh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~---~s~~~vv~~l~lsP-~Gr~v~~g~ed~t-vki~d~~ 184 (825)
T KOG0267|consen 110 GHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY---KSHTRVVDVLRLSP-DGRWVASGGEDNT-VKIWDLT 184 (825)
T ss_pred ccccCcceeeeccceEEeccccccccceehhhhccCceeee---cCCcceeEEEeecC-CCceeeccCCcce-eeeeccc
Confidence 999999999999 9999999999999999999977654333 34666899999999 9999999999888 9999998
Q ss_pred CCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558 162 FPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA 241 (253)
Q Consensus 162 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 241 (253)
.++. ...|..|++.+.++.|+|.. .++++|+.|+++++||+++..... ........|.+++|+|++..+++
T Consensus 185 agk~-~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe~I~-------s~~~~~~~v~~~~fn~~~~~~~~ 255 (825)
T KOG0267|consen 185 AGKL-SKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFEVIS-------SGKPETDGVRSLAFNPDGKIVLS 255 (825)
T ss_pred cccc-ccccccccccccccccCchh-hhhccCCCCceeeeeccceeEEee-------ccCCccCCceeeeecCCceeeec
Confidence 8764 88999999999999999997 689999999999999999765332 22334778999999999985555
Q ss_pred EE
Q 035558 242 IA 243 (253)
Q Consensus 242 ~~ 243 (253)
+.
T Consensus 256 G~ 257 (825)
T KOG0267|consen 256 GE 257 (825)
T ss_pred Cc
Confidence 43
No 104
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=7.6e-27 Score=176.37 Aligned_cols=223 Identities=15% Similarity=0.272 Sum_probs=181.4
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
+++.+||+|+ + .|.||+.++. +.+..+.+|. +.|.+++|- ...+.+++++.|+.|++|+++....+.+
T Consensus 212 ~Dgkylatgg~d~~v~Iw~~~t~----ehv~~~~ghr-----~~V~~L~fr-~gt~~lys~s~Drsvkvw~~~~~s~vet 281 (479)
T KOG0299|consen 212 SDGKYLATGGRDRHVQIWDCDTL----EHVKVFKGHR-----GAVSSLAFR-KGTSELYSASADRSVKVWSIDQLSYVET 281 (479)
T ss_pred CCCcEEEecCCCceEEEecCccc----chhhcccccc-----cceeeeeee-cCccceeeeecCCceEEEehhHhHHHHH
Confidence 5788999998 4 9999999997 8889999999 999999998 7778899999999999999999999999
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
+.+|.+.|.++... ..+.+-+|+.|+++++|++.... +.++. ++.+.+-|++|- +...+++|+.+|. |.+|+
T Consensus 282 lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees--qlifr--g~~~sidcv~~I--n~~HfvsGSdnG~-IaLWs 354 (479)
T KOG0299|consen 282 LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES--QLIFR--GGEGSIDCVAFI--NDEHFVSGSDNGS-IALWS 354 (479)
T ss_pred HhCCccceeeechhcccceEEeccccceeEEEeccccc--eeeee--CCCCCeeeEEEe--cccceeeccCCce-EEEee
Confidence 99999999999988 77777777799999999995443 34443 446689999998 6789999999998 99999
Q ss_pred CCCCCCCeeeec-cc-----------ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCce
Q 035558 160 IRFPTLPVVELQ-RH-----------QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEI 227 (253)
Q Consensus 160 ~~~~~~~~~~~~-~~-----------~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v 227 (253)
+.+.+ |+.... +| ...|++++..|.. .++++|+.+|.|++|-+..+-... .+.....-.+.|
T Consensus 355 ~~KKk-plf~~~~AHgv~~~~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~r~i----~~l~~ls~~GfV 428 (479)
T KOG0299|consen 355 LLKKK-PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGLRAI----NLLYSLSLVGFV 428 (479)
T ss_pred ecccC-ceeEeeccccccCCccccccccceeeeEecccC-ceEEecCCCCceEEEEecCCcccc----ceeeecccccEE
Confidence 98755 444332 22 2268999999988 599999999999999999875432 123444567899
Q ss_pred eEEEEcCCCCceEEE-EcCCcE
Q 035558 228 EQLQWSSSQPDWVAI-AFSTKL 248 (253)
Q Consensus 228 ~~~~~~~~~~~~~~~-~~~~~i 248 (253)
++++|+++|+.++++ +....+
T Consensus 429 Nsl~f~~sgk~ivagiGkEhRl 450 (479)
T KOG0299|consen 429 NSLAFSNSGKRIVAGIGKEHRL 450 (479)
T ss_pred EEEEEccCCCEEEEeccccccc
Confidence 999999999966653 444433
No 105
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=4.7e-26 Score=160.88 Aligned_cols=213 Identities=17% Similarity=0.282 Sum_probs=177.8
Q ss_pred CCCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558 1 ECQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD 78 (253)
Q Consensus 1 sp~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 78 (253)
+|+.++++++++ + +|++||...+ ++........ +.| -+.|+ |++.+++.+..|..|...|.++.+..
T Consensus 73 ~~~~~d~~atas~dk~ir~wd~r~~----k~~~~i~~~~-----eni-~i~ws-p~g~~~~~~~kdD~it~id~r~~~~~ 141 (313)
T KOG1407|consen 73 DPKHPDLFATASGDKTIRIWDIRSG----KCTARIETKG-----ENI-NITWS-PDGEYIAVGNKDDRITFIDARTYKIV 141 (313)
T ss_pred CCCCCcceEEecCCceEEEEEeccC----cEEEEeeccC-----cce-EEEEc-CCCCEEEEecCcccEEEEEeccccee
Confidence 477888888877 5 9999999987 7776665554 344 57899 88999999999999999999987766
Q ss_pred eeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558 79 TQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV 157 (253)
Q Consensus 79 ~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~ 157 (253)
...+ ....+..++|+ ++++|......|+|.|.....-+ .+.....|...+.|+.|+| +|+++|+|+.|.. +.+
T Consensus 142 ~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk---pv~si~AH~snCicI~f~p-~GryfA~GsADAl-vSL 215 (313)
T KOG1407|consen 142 NEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK---PVQSIKAHPSNCICIEFDP-DGRYFATGSADAL-VSL 215 (313)
T ss_pred ehhc-ccceeeeeeecCCCCEEEEecCCceEEEEeccccc---cccccccCCcceEEEEECC-CCceEeeccccce-eec
Confidence 6554 45678889999 88888777778999999887665 4445567777999999999 9999999999998 999
Q ss_pred EECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC
Q 035558 158 LDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP 237 (253)
Q Consensus 158 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 237 (253)
||+...- ++..+..+.-+|..+.|+.+| ++||+||+|..|-|=+++++.+. ....+.++...|+|+|...
T Consensus 216 WD~~ELi-C~R~isRldwpVRTlSFS~dg-~~lASaSEDh~IDIA~vetGd~~--------~eI~~~~~t~tVAWHPk~~ 285 (313)
T KOG1407|consen 216 WDVDELI-CERCISRLDWPVRTLSFSHDG-RMLASASEDHFIDIAEVETGDRV--------WEIPCEGPTFTVAWHPKRP 285 (313)
T ss_pred cChhHhh-hheeeccccCceEEEEeccCc-ceeeccCccceEEeEecccCCeE--------EEeeccCCceeEEecCCCc
Confidence 9998754 578888899999999999999 79999999999999999998743 5556889999999999987
Q ss_pred ceE
Q 035558 238 DWV 240 (253)
Q Consensus 238 ~~~ 240 (253)
.|+
T Consensus 286 LLA 288 (313)
T KOG1407|consen 286 LLA 288 (313)
T ss_pred eee
Confidence 444
No 106
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=9.1e-27 Score=172.15 Aligned_cols=205 Identities=17% Similarity=0.283 Sum_probs=166.2
Q ss_pred CCeeEEEecCC-CCCEEEEEeCCCeEEEEeccC----------------ceeeeeeecccccEEEEEec--CCCeEEEEe
Q 035558 43 GPLTSFDWNEA-EPRRIGTSSIDTTCTIWDIER----------------EAVDTQLIAHDKEVYDIAWG--GVGVFASVS 103 (253)
Q Consensus 43 ~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~----------------~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~ 103 (253)
+.++.+.-++. +..+.++-+..|.|+||++.. .+++.++.+|...=+.|+|+ ....|++|.
T Consensus 152 g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGD 231 (440)
T KOG0302|consen 152 GGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGD 231 (440)
T ss_pred cccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCc
Confidence 66666666643 556777788999999999864 13566778899999999999 556688888
Q ss_pred CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC-CCeeeecccccceeEEEE
Q 035558 104 ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT-LPVVELQRHQASVNAIAW 182 (253)
Q Consensus 104 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~ 182 (253)
--+.|++|...++.-..-.....+|+..|-.++|+|.....|++|+-|+. |+|||+|... .+....++|.+.|+.+.|
T Consensus 232 c~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs-IrIWDiRs~~~~~~~~~kAh~sDVNVISW 310 (440)
T KOG0302|consen 232 CVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS-IRIWDIRSGPKKAAVSTKAHNSDVNVISW 310 (440)
T ss_pred cccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce-EEEEEecCCCccceeEeeccCCceeeEEc
Confidence 88889999998865333333445688899999999988999999999999 9999999873 344555889999999999
Q ss_pred ecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCc-eEEEEcCCcEEEEEC
Q 035558 183 APHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPD-WVAIAFSTKLQILRV 253 (253)
Q Consensus 183 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~i~vw~l 253 (253)
+..-+ +|++|+.||+++|||++..+... ....+..|..+|++|.|+|.... +++++.|++|.+|+|
T Consensus 311 nr~~~-lLasG~DdGt~~iwDLR~~~~~~----pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 311 NRREP-LLASGGDDGTLSIWDLRQFKSGQ----PVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred cCCcc-eeeecCCCceEEEEEhhhccCCC----cceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence 99985 99999999999999999866321 23567789999999999997654 557889999999996
No 107
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1e-26 Score=175.97 Aligned_cols=211 Identities=15% Similarity=0.191 Sum_probs=174.7
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC------
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER------ 74 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~------ 74 (253)
++|.+|++|. . .+++|.+.++ .++..+.+|- .+|+++.|+ .++.+|++|+.||.|.+|.+.+
T Consensus 91 n~G~~l~ag~i~g~lYlWelssG----~LL~v~~aHY-----Q~ITcL~fs-~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 91 NLGYFLLAGTISGNLYLWELSSG----ILLNVLSAHY-----QSITCLKFS-DDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred CCceEEEeecccCcEEEEEeccc----cHHHHHHhhc-----cceeEEEEe-CCCcEEEecCCCccEEEEEEEeeccccc
Confidence 5788888885 3 9999999999 9999999998 899999999 9999999999999999998743
Q ss_pred ---ceeeeeeecccccEEEEEec---CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558 75 ---EAVDTQLIAHDKEVYDIAWG---GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI 148 (253)
Q Consensus 75 ---~~~~~~~~~~~~~v~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 148 (253)
-++...+..|+-+|+++... ....++|++.|.++++||+..+.....+.. ...+.+++.+| .+..+.+|
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f----p~si~av~lDp-ae~~~yiG 235 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF----PSSIKAVALDP-AERVVYIG 235 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec----CCcceeEEEcc-cccEEEec
Confidence 24677888999999999988 356899999999999999999975444432 23899999999 89999999
Q ss_pred EeCCCeEEEEECCCCC---------------CCeeeeccccc--ceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC
Q 035558 149 IMDSAKVVVLDIRFPT---------------LPVVELQRHQA--SVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV 211 (253)
Q Consensus 149 ~~~~~~i~~~d~~~~~---------------~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 211 (253)
+.+|. |.+.++.+.. ..+..+.+|.+ .|+|++.+-|| .+|++|+.||.+.|||+.+.+...
T Consensus 236 t~~G~-I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~Q~iR 313 (476)
T KOG0646|consen 236 TEEGK-IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSKQCIR 313 (476)
T ss_pred CCcce-EEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchHHHHH
Confidence 99998 8888775432 12455677887 99999999999 699999999999999999876543
Q ss_pred CCCCCCeeeccCCCceeEEEEcCCCC
Q 035558 212 EGGLDPILAYTAGAEIEQLQWSSSQP 237 (253)
Q Consensus 212 ~~~~~~~~~~~~~~~v~~~~~~~~~~ 237 (253)
......++|+.+.+.|-.+
T Consensus 314 -------tl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 314 -------TLQTSKGPVTNLQINPLER 332 (476)
T ss_pred -------HHhhhccccceeEeecccc
Confidence 3333577888888866543
No 108
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=1.5e-26 Score=174.77 Aligned_cols=204 Identities=15% Similarity=0.234 Sum_probs=167.9
Q ss_pred CCeeEEEecCCCC-CEEEEEeCCCeEEEEeccCce----eeeeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCC
Q 035558 43 GPLTSFDWNEAEP-RRIGTSSIDTTCTIWDIEREA----VDTQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRD 115 (253)
Q Consensus 43 ~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~ 115 (253)
.+|++++|+|... +++++|+..|.|-+||+.+.+ -+..+..|..+|.+|.|+ +...+++.+.||+|++-|++.
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~ 266 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEG 266 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecc
Confidence 8999999997655 789999999999999995322 344566899999999999 888999999999999999987
Q ss_pred CCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecC
Q 035558 116 KEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGD 195 (253)
Q Consensus 116 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 195 (253)
..... ++........+..+.|+. +...++.+..-|. ..+||+|+.......+..|...|.+|+++|..+.+|+|+|.
T Consensus 267 ~i~e~-v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~-f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~ 343 (498)
T KOG4328|consen 267 NISEE-VLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGN-FNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASL 343 (498)
T ss_pred hhhHH-HhhcCccceeeeeccccC-CCccEEEeecccc-eEEEEeecCCccchhhhhhhcccceeecCCCCchheeeccc
Confidence 75322 222223444778888988 5556666666666 99999999886677788899999999999999999999999
Q ss_pred CCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 196 DSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 196 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
|++.+|||++...... ........|...|.+..|||.+..+++.+.|+.|+||+
T Consensus 344 D~T~kIWD~R~l~~K~---sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 344 DQTAKIWDLRQLRGKA---SPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD 397 (498)
T ss_pred CcceeeeehhhhcCCC---CcceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence 9999999999865332 11245668999999999999998899999999999997
No 109
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=4.7e-26 Score=172.16 Aligned_cols=240 Identities=15% Similarity=0.202 Sum_probs=182.3
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeee---ec-------CCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEE
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSL---LN-------GNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIW 70 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~---~~-------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 70 (253)
++..+..+++ + +|.=|++.++...-..... ++ .+. ..|...+.+++.+ +++++|++|+.|..|.||
T Consensus 152 ~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS-~Dgkylatgg~d~~v~Iw 229 (479)
T KOG0299|consen 152 PDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEILTLAVS-SDGKYLATGGRDRHVQIW 229 (479)
T ss_pred ccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc-ccccceeEEEEEc-CCCcEEEecCCCceEEEe
Confidence 4455566665 5 9999998776211000000 11 111 1333789999999 999999999999999999
Q ss_pred eccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE
Q 035558 71 DIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII 149 (253)
Q Consensus 71 d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 149 (253)
+.++.+.++.+.+|.+.|.+++|- ..+.+++++.|++|++|++..... +....+|...|..+.-.. .++.+-+|+
T Consensus 230 ~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~---vetlyGHqd~v~~IdaL~-reR~vtVGg 305 (479)
T KOG0299|consen 230 DCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY---VETLYGHQDGVLGIDALS-RERCVTVGG 305 (479)
T ss_pred cCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH---HHHHhCCccceeeechhc-ccceEEecc
Confidence 999999999999999999999999 888999999999999999998763 333446666888887765 566666666
Q ss_pred eCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCC----CCCCe-eeccCC
Q 035558 150 MDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEG----GLDPI-LAYTAG 224 (253)
Q Consensus 150 ~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~-~~~~~~ 224 (253)
.|.+ +++|++... ....+.+|.+.+-|++|-.+. .+++||.+|.|.+|++...+..... ...+. ....+.
T Consensus 306 rDrT-~rlwKi~ee--sqlifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~ 380 (479)
T KOG0299|consen 306 RDRT-VRLWKIPEE--SQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGN 380 (479)
T ss_pred ccce-eEEEecccc--ceeeeeCCCCCeeeEEEeccc--ceeeccCCceEEEeeecccCceeEeeccccccCCccccccc
Confidence 8887 999999543 356678888999999999875 7999999999999999886643310 00011 112233
Q ss_pred CceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 225 AEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 225 ~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
..|++++..|....+++++.+|.|++|.+
T Consensus 381 ~Witsla~i~~sdL~asGS~~G~vrLW~i 409 (479)
T KOG0299|consen 381 FWITSLAVIPGSDLLASGSWSGCVRLWKI 409 (479)
T ss_pred cceeeeEecccCceEEecCCCCceEEEEe
Confidence 58999999999887778889999999974
No 110
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=7.2e-27 Score=178.77 Aligned_cols=226 Identities=16% Similarity=0.219 Sum_probs=189.3
Q ss_pred CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
+|++.|++|+. +|.|||+... ..+....+..-. -...+++.+ ++.+..+++..||.|.|||+.....+..
T Consensus 475 pdgrtLivGGeastlsiWDLAap--Tprikaeltssa-----paCyALa~s-pDakvcFsccsdGnI~vwDLhnq~~Vrq 546 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAP--TPRIKAELTSSA-----PACYALAIS-PDAKVCFSCCSDGNIAVWDLHNQTLVRQ 546 (705)
T ss_pred CCCceEEeccccceeeeeeccCC--CcchhhhcCCcc-----hhhhhhhcC-CccceeeeeccCCcEEEEEcccceeeec
Confidence 46777777776 9999999874 223333333332 356788899 8999999999999999999999999999
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
+++|++.+.||..+ +|..|-+|+-|.+||.||++++..+... ...+.|.++..+| ++.++++|-.++. +.+..
T Consensus 547 fqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh----dF~SQIfSLg~cP-~~dWlavGMens~-vevlh 620 (705)
T KOG0639|consen 547 FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH----DFSSQIFSLGYCP-TGDWLAVGMENSN-VEVLH 620 (705)
T ss_pred ccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh----hhhhhheecccCC-CccceeeecccCc-EEEEe
Confidence 99999999999999 9999999999999999999998743322 3345899999999 9999999998888 88887
Q ss_pred CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558 160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW 239 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 239 (253)
..... ...+..|+..|.++.|.+.| +++++.+.|+.+..|....+... ......+.|.++..+.+++++
T Consensus 621 ~skp~--kyqlhlheScVLSlKFa~cG-kwfvStGkDnlLnawrtPyGasi--------FqskE~SsVlsCDIS~ddkyI 689 (705)
T KOG0639|consen 621 TSKPE--KYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASI--------FQSKESSSVLSCDISFDDKYI 689 (705)
T ss_pred cCCcc--ceeecccccEEEEEEecccC-ceeeecCchhhhhhccCccccce--------eeccccCcceeeeeccCceEE
Confidence 77644 56777899999999999999 79999999999999998877643 334467899999999999999
Q ss_pred EEEEcCCcEEEEEC
Q 035558 240 VAIAFSTKLQILRV 253 (253)
Q Consensus 240 ~~~~~~~~i~vw~l 253 (253)
++++.|....||++
T Consensus 690 VTGSGdkkATVYeV 703 (705)
T KOG0639|consen 690 VTGSGDKKATVYEV 703 (705)
T ss_pred EecCCCcceEEEEE
Confidence 99999999988875
No 111
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=2.2e-26 Score=176.43 Aligned_cols=212 Identities=15% Similarity=0.215 Sum_probs=167.3
Q ss_pred eeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce----eeeeee-cccccEEEEEec-CCCeEEEEe
Q 035558 30 KSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA----VDTQLI-AHDKEVYDIAWG-GVGVFASVS 103 (253)
Q Consensus 30 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~-~~~~~v~~~~~~-~~~~l~~~~ 103 (253)
...+++|. ..|.++++. +.|..|++|+.|-+|++||++... ..+.+. .....|.+++|+ .++.|++.+
T Consensus 160 Ei~l~hgt-----k~Vsal~~D-p~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 160 EIQLKHGT-----KIVSALAVD-PSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS 233 (641)
T ss_pred eEeccCCc-----eEEEEeeec-CCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe
Confidence 34566777 789999999 889999999999999999998543 122222 345689999999 888888888
Q ss_pred CCCcEEEEEcCCCCCeee---------eeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeec---
Q 035558 104 ADGSVRVFDLRDKEHSTI---------IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQ--- 171 (253)
Q Consensus 104 ~dg~i~i~d~~~~~~~~~---------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--- 171 (253)
.....+++|-........ +....+|...+++.+|+|.+...+++++.|+. +++||+.+.+..+..++
T Consensus 234 g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgt-lRiWdv~~~k~q~qVik~k~ 312 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGT-LRIWDVNNTKSQLQVIKTKP 312 (641)
T ss_pred cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCc-EEEEecCCchhheeEEeecc
Confidence 888999999775543222 23345677789999999988999999999999 99999988664444443
Q ss_pred --ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCC--ceeEEEEcCCCCceEEEEcCCc
Q 035558 172 --RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGA--EIEQLQWSSSQPDWVAIAFSTK 247 (253)
Q Consensus 172 --~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~ 247 (253)
+..-++++++|+|++ .++|+|+.||.|.+|+..+..... .......|.. .|++|+||++|++|++=+.|+.
T Consensus 313 ~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p----~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t 387 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRP----VMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT 387 (641)
T ss_pred CCCcccCceeeecCCCc-chhhhcccCCceeeeecCCccccc----ceEeeeccCCCCceeEEEeccccchhhhccCCCc
Confidence 234478999999999 589999999999999986654221 1233445755 8999999999999999999999
Q ss_pred EEEEEC
Q 035558 248 LQILRV 253 (253)
Q Consensus 248 i~vw~l 253 (253)
+++|+|
T Consensus 388 LKvWDL 393 (641)
T KOG0772|consen 388 LKVWDL 393 (641)
T ss_pred eeeeec
Confidence 999996
No 112
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=8e-26 Score=162.74 Aligned_cols=197 Identities=15% Similarity=0.223 Sum_probs=153.4
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-ee-eeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCe
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-AV-DTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHS 119 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~-~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~ 119 (253)
+.|.+|+|+|....++++++.||+||+|+++.. .. -+....|.++|.+++|+ ++..+++|+.|+.+++||+.+++..
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~ 107 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS 107 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee
Confidence 789999999767788889999999999999873 32 23445799999999999 9999999999999999999999633
Q ss_pred eeeeccCCCCCCeeEEEeeCCCCC--EEEEEEeCCCeEEEEECCCCCCCeeeec--------------------------
Q 035558 120 TIIYESSEPDTPLVRLGWNKQDPR--YMATIIMDSAKVVVLDIRFPTLPVVELQ-------------------------- 171 (253)
Q Consensus 120 ~~~~~~~~~~~~i~~~~~~~~~~~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~-------------------------- 171 (253)
. ...|..+|..+.|-+ ... .|++|+.|.+ |++||+|.... +.++.
T Consensus 108 ~----v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKT-lKfWD~R~~~p-v~t~~LPeRvYa~Dv~~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 108 Q----VAAHDAPVKTCHWVP-GMNYQCLVTGSWDKT-LKFWDTRSSNP-VATLQLPERVYAADVLYPMAVVATAERHIAV 180 (347)
T ss_pred e----eeecccceeEEEEec-CCCcceeEecccccc-eeecccCCCCe-eeeeeccceeeehhccCceeEEEecCCcEEE
Confidence 2 246777999999987 444 8999999999 99999997542 22211
Q ss_pred -----------ccc----cceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCC---------Cce
Q 035558 172 -----------RHQ----ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAG---------AEI 227 (253)
Q Consensus 172 -----------~~~----~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---------~~v 227 (253)
.+. -.+.+++..++.+ ..+.|+-.|.+.|..+..+.... ...+.-|. ..|
T Consensus 181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~~-~~alGsiEGrv~iq~id~~~~~~-----nFtFkCHR~~~~~~~~VYaV 254 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKWQTRCVACFQDKD-GFALGSIEGRVAIQYIDDPNPKD-----NFTFKCHRSTNSVNDDVYAV 254 (347)
T ss_pred EEcCCCcchhhhhcCcccceeeEEEEEecCC-ceEeeeecceEEEEecCCCCccC-----ceeEEEeccCCCCCCceEEe
Confidence 111 2467888888874 66889999999998887753211 11333332 368
Q ss_pred eEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 228 EQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
++|+|+|....|+++|+||...+||
T Consensus 255 Nsi~FhP~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 255 NSIAFHPVHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred cceEeecccceEEEecCCceEEEec
Confidence 8999999988899999999999997
No 113
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.3e-27 Score=163.00 Aligned_cols=208 Identities=19% Similarity=0.304 Sum_probs=170.4
Q ss_pred eecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc---eeeeeeecccccEEEEEec---CCCeEEEEeCC
Q 035558 32 LLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE---AVDTQLIAHDKEVYDIAWG---GVGVFASVSAD 105 (253)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~---~~~~l~~~~~d 105 (253)
.-..|+ +.|..+... --+.+|++++.|++|+|+..+.. +++.++.+|.+||+.++|. -|.+||+++.|
T Consensus 6 idt~H~-----D~IHda~lD-yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYD 79 (299)
T KOG1332|consen 6 IDTQHE-----DMIHDAQLD-YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYD 79 (299)
T ss_pred hhhhhh-----hhhhHhhhh-hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecC
Confidence 344676 667676666 67999999999999999998764 4677899999999999998 78999999999
Q ss_pred CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC-CCEEEEEEeCCCeEEEEECCCCC--CCeeeecccccceeEEEE
Q 035558 106 GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD-PRYMATIIMDSAKVVVLDIRFPT--LPVVELQRHQASVNAIAW 182 (253)
Q Consensus 106 g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~ 182 (253)
|.|.||.-.++ ..........|...|++++|.|.+ +-.|++++.||. |.+.+.+... ...+....|.-.|++++|
T Consensus 80 gkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~-vsvl~~~~~g~w~t~ki~~aH~~GvnsVsw 157 (299)
T KOG1332|consen 80 GKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGK-VSVLTYDSSGGWTTSKIVFAHEIGVNSVSW 157 (299)
T ss_pred ceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCc-EEEEEEcCCCCccchhhhhccccccceeee
Confidence 99999998877 444556667888899999999854 457888889998 9999888752 224556789999999999
Q ss_pred ecC---C----------CCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC----CceEEEEcC
Q 035558 183 APH---S----------SCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ----PDWVAIAFS 245 (253)
Q Consensus 183 ~~~---~----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~ 245 (253)
.|- | .+.|++|+.|..|+||+..+..-.. ...+.+|...|+.++|.|.- ..+++++.|
T Consensus 158 apa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~-----e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqD 232 (299)
T KOG1332|consen 158 APASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKL-----ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQD 232 (299)
T ss_pred cCcCCCccccccCcccccceeeccCCccceeeeecCCcchhh-----hhhhhhcchhhhhhhhccccCCCceeeEEecCC
Confidence 995 2 1469999999999999998874322 23578999999999999975 357789999
Q ss_pred CcEEEEE
Q 035558 246 TKLQILR 252 (253)
Q Consensus 246 ~~i~vw~ 252 (253)
+.+.||.
T Consensus 233 g~viIwt 239 (299)
T KOG1332|consen 233 GTVIIWT 239 (299)
T ss_pred CcEEEEE
Confidence 9999995
No 114
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=4.1e-26 Score=180.26 Aligned_cols=220 Identities=16% Similarity=0.202 Sum_probs=182.3
Q ss_pred CceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeE-EEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 5 PDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTS-FDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 5 ~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
+..+++++ | ++++|+-... .+-....+.+|. +-|.. +++-+.+.-.+++|+.|..|.+|.+.+..+...+
T Consensus 25 ~~~i~s~sRd~t~~vw~~~~~--~~l~~~~~~~~~-----g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~L 97 (745)
T KOG0301|consen 25 GVCIISGSRDGTVKVWAKKGK--QYLETHAFEGPK-----GFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTL 97 (745)
T ss_pred CeEEeecCCCCceeeeeccCc--ccccceecccCc-----ceeeccceeccccCcceEeecccceEEEEecCCCCchhhh
Confidence 34567777 5 9999998763 233334567776 55655 7887545567999999999999999999999999
Q ss_pred ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558 82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160 (253)
Q Consensus 82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~ 160 (253)
++|+..|.++... ++. +++||.|.++++|.+..-. ....+|...|+.++.-| ++ .+++|+.|.. |++|.-
T Consensus 98 kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~-----~~l~gH~asVWAv~~l~-e~-~~vTgsaDKt-IklWk~ 168 (745)
T KOG0301|consen 98 KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV-----YSLQGHTASVWAVASLP-EN-TYVTGSADKT-IKLWKG 168 (745)
T ss_pred hccccceeeeecCCcCc-eEecccccceEEecchhhh-----cccCCcchheeeeeecC-CC-cEEeccCcce-eeeccC
Confidence 9999999999977 555 9999999999999776543 23568888999999988 44 8999999998 999987
Q ss_pred CCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE
Q 035558 161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 240 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 240 (253)
. ..++++.+|...|.++++-|++ .|++++.||.|+.|++ ++... ....+|.+.+++++..++++.++
T Consensus 169 ~---~~l~tf~gHtD~VRgL~vl~~~--~flScsNDg~Ir~w~~-~ge~l-------~~~~ghtn~vYsis~~~~~~~Iv 235 (745)
T KOG0301|consen 169 G---TLLKTFSGHTDCVRGLAVLDDS--HFLSCSNDGSIRLWDL-DGEVL-------LEMHGHTNFVYSISMALSDGLIV 235 (745)
T ss_pred C---chhhhhccchhheeeeEEecCC--CeEeecCCceEEEEec-cCcee-------eeeeccceEEEEEEecCCCCeEE
Confidence 3 3588999999999999999986 5999999999999999 44443 47889999999999777777899
Q ss_pred EEEcCCcEEEEEC
Q 035558 241 AIAFSTKLQILRV 253 (253)
Q Consensus 241 ~~~~~~~i~vw~l 253 (253)
+++.|++++||+.
T Consensus 236 s~gEDrtlriW~~ 248 (745)
T KOG0301|consen 236 STGEDRTLRIWKK 248 (745)
T ss_pred EecCCceEEEeec
Confidence 9999999999973
No 115
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.95 E-value=2.6e-25 Score=159.40 Aligned_cols=241 Identities=20% Similarity=0.317 Sum_probs=182.4
Q ss_pred CCCCCceEEeecC---------cEEEEEccCCccc-----cceeeeec-CCCCccccCCeeEEEecCCCCCEEEEEeCCC
Q 035558 1 ECQKPDLLATSSD---------FLRVWRISDEDRR-----VELKSLLN-GNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT 65 (253)
Q Consensus 1 sp~~~~~l~~~~~---------~v~iw~~~~~~~~-----~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 65 (253)
+|.+.++|+++.. .+-||.+...-.. ++++..+. .+- +.|.|+.|. |++..+++-. |.
T Consensus 72 ~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteav-----g~i~cvew~-Pns~klasm~-dn 144 (370)
T KOG1007|consen 72 SPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAV-----GKINCVEWE-PNSDKLASMD-DN 144 (370)
T ss_pred CCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHh-----CceeeEEEc-CCCCeeEEec-cC
Confidence 5888899988641 5789998775222 33333443 233 689999999 6888888765 78
Q ss_pred eEEEEeccCcee-eeeee-----cccccEEEEEec---CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEE
Q 035558 66 TCTIWDIEREAV-DTQLI-----AHDKEVYDIAWG---GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLG 136 (253)
Q Consensus 66 ~i~vwd~~~~~~-~~~~~-----~~~~~v~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~ 136 (253)
.|.+|+++.+.. ...+. ++....++-+|+ +++.+++. .|+++..||+|+.++...+. ..|...+..+.
T Consensus 145 ~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~--dAHgq~vrdlD 221 (370)
T KOG1007|consen 145 NIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIE--DAHGQRVRDLD 221 (370)
T ss_pred ceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchh--hhhcceeeecc
Confidence 999999987754 33332 345677788898 77777775 48899999999887544443 34555899999
Q ss_pred eeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC-----
Q 035558 137 WNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV----- 211 (253)
Q Consensus 137 ~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----- 211 (253)
|+|+...+|++|+.|+. |++||.|+.+.|++++.+|...|+++.|+|..++++++|+.|..|.+|-..+-....
T Consensus 222 fNpnkq~~lvt~gDdgy-vriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~ 300 (370)
T KOG1007|consen 222 FNPNKQHILVTCGDDGY-VRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFE 300 (370)
T ss_pred CCCCceEEEEEcCCCcc-EEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccc
Confidence 99976777888888888 999999999999999999999999999999888899999999999999765433100
Q ss_pred -----------CCCC------CCeeeccCCCceeEEEEcCCCCceE-EEEcCCcEEEEE
Q 035558 212 -----------EGGL------DPILAYTAGAEIEQLQWSSSQPDWV-AIAFSTKLQILR 252 (253)
Q Consensus 212 -----------~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~vw~ 252 (253)
.+.. .......|...|++++|+...+.++ +.+.||++.|=+
T Consensus 301 ~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~ 359 (370)
T KOG1007|consen 301 DDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISS 359 (370)
T ss_pred cccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeec
Confidence 0000 0124557899999999999988766 578899887643
No 116
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=2e-26 Score=162.01 Aligned_cols=189 Identities=15% Similarity=0.229 Sum_probs=157.3
Q ss_pred CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
++.++|++|+. -+||||++.. -.+...+.+|. +.|..+-|+ ...+.|++.+.|++||+||.++++.+++
T Consensus 110 ~ds~~lltgg~ekllrvfdln~p---~App~E~~ght-----g~Ir~v~wc-~eD~~iLSSadd~tVRLWD~rTgt~v~s 180 (334)
T KOG0278|consen 110 QDSNYLLTGGQEKLLRVFDLNRP---KAPPKEISGHT-----GGIRTVLWC-HEDKCILSSADDKTVRLWDHRTGTEVQS 180 (334)
T ss_pred ccchhhhccchHHHhhhhhccCC---CCCchhhcCCC-----CcceeEEEe-ccCceEEeeccCCceEEEEeccCcEEEE
Confidence 46677888885 8999999875 24556788999 899999999 7788888889999999999999999999
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
+. .+.+|+++..+ +++++.+ ...+.|.+||..+-..++.. .-...|.+..++| +...+++|+.|.. ++.||
T Consensus 181 L~-~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~----k~P~nV~SASL~P-~k~~fVaGged~~-~~kfD 252 (334)
T KOG0278|consen 181 LE-FNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSY----KMPCNVESASLHP-KKEFFVAGGEDFK-VYKFD 252 (334)
T ss_pred Ee-cCCCCcceeeccCCCEEEE-ecCceeEEeccccccceeec----cCccccccccccC-CCceEEecCcceE-EEEEe
Confidence 87 57899999999 7776655 45678999999987743332 2233788999999 7788899998888 99999
Q ss_pred CCCCCCCeeee-cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCC
Q 035558 160 IRFPTLPVVEL-QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQP 210 (253)
Q Consensus 160 ~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 210 (253)
..++.+ +..+ ++|.++|.|+.|+|+|. ..++||+||+|++|.+...+..
T Consensus 253 y~TgeE-i~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 253 YNTGEE-IGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ccCCce-eeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEecCCCch
Confidence 999876 5554 88999999999999994 9999999999999998876643
No 117
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.2e-25 Score=177.71 Aligned_cols=212 Identities=18% Similarity=0.222 Sum_probs=175.6
Q ss_pred ceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec
Q 035558 6 DLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA 83 (253)
Q Consensus 6 ~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 83 (253)
-.+++|+ | .+.+|.+... .+..++++|+ ..|.+++.. .++. +++|+.|.++++|.. +++...+++
T Consensus 72 ~~l~~g~~D~~i~v~~~~~~----~P~~~LkgH~-----snVC~ls~~-~~~~-~iSgSWD~TakvW~~--~~l~~~l~g 138 (745)
T KOG0301|consen 72 GRLVVGGMDTTIIVFKLSQA----EPLYTLKGHK-----SNVCSLSIG-EDGT-LISGSWDSTAKVWRI--GELVYSLQG 138 (745)
T ss_pred cceEeecccceEEEEecCCC----Cchhhhhccc-----cceeeeecC-CcCc-eEecccccceEEecc--hhhhcccCC
Confidence 3455555 6 9999999987 8999999999 899999976 5565 899999999999987 456667999
Q ss_pred ccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCC
Q 035558 84 HDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFP 163 (253)
Q Consensus 84 ~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~ 163 (253)
|+..|+++.....+.++||+.|.+|++|.-. + .+....+|...|+.+++-+ +..|++++.||. |++|++. +
T Consensus 139 H~asVWAv~~l~e~~~vTgsaDKtIklWk~~--~---~l~tf~gHtD~VRgL~vl~--~~~flScsNDg~-Ir~w~~~-g 209 (745)
T KOG0301|consen 139 HTASVWAVASLPENTYVTGSADKTIKLWKGG--T---LLKTFSGHTDCVRGLAVLD--DSHFLSCSNDGS-IRLWDLD-G 209 (745)
T ss_pred cchheeeeeecCCCcEEeccCcceeeeccCC--c---hhhhhccchhheeeeEEec--CCCeEeecCCce-EEEEecc-C
Confidence 9999999998844499999999999999653 2 3444567888999999985 567899999998 9999994 3
Q ss_pred CCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC-CCceeEEEEcCCCCceEEE
Q 035558 164 TLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA-GAEIEQLQWSSSQPDWVAI 242 (253)
Q Consensus 164 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~ 242 (253)
. .+.++.+|+..++++...+++ ..++++++|++++||+..... ....| ...|+++.+-++|. ++++
T Consensus 210 e-~l~~~~ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~e~~----------q~I~lPttsiWsa~~L~NgD-Ivvg 276 (745)
T KOG0301|consen 210 E-VLLEMHGHTNFVYSISMALSD-GLIVSTGEDRTLRIWKKDECV----------QVITLPTTSIWSAKVLLNGD-IVVG 276 (745)
T ss_pred c-eeeeeeccceEEEEEEecCCC-CeEEEecCCceEEEeecCceE----------EEEecCccceEEEEEeeCCC-EEEe
Confidence 3 589999999999999966666 599999999999999987322 33334 34899999988885 9999
Q ss_pred EcCCcEEEEE
Q 035558 243 AFSTKLQILR 252 (253)
Q Consensus 243 ~~~~~i~vw~ 252 (253)
++||.||||.
T Consensus 277 ~SDG~VrVfT 286 (745)
T KOG0301|consen 277 GSDGRVRVFT 286 (745)
T ss_pred ccCceEEEEE
Confidence 9999999995
No 118
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=6.1e-26 Score=180.40 Aligned_cols=230 Identities=13% Similarity=0.236 Sum_probs=193.0
Q ss_pred CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCC--CCEEEEEeCCCeEEEEeccCc-ee
Q 035558 3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAE--PRRIGTSSIDTTCTIWDIERE-AV 77 (253)
Q Consensus 3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~-~~ 77 (253)
+++..||+|.. .++||++.+. +....+++|+ ..|.|+.|+.|. .++||+++.|..|.|+|+... .+
T Consensus 469 p~gqhLAsGDr~GnlrVy~Lq~l----~~~~~~eAHe-----sEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l 539 (1080)
T KOG1408|consen 469 PDGQHLASGDRGGNLRVYDLQEL----EYTCFMEAHE-----SEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL 539 (1080)
T ss_pred CCcceecccCccCceEEEEehhh----hhhhheeccc-----ceeEEEeecCchhhhHhhhhccCCceEEEEecccccch
Confidence 67889999986 9999999886 8888899999 999999998543 578999999999999999755 47
Q ss_pred eeeeecccccEEEEEec-CC--CeEEEEeCCCcEEEEEcCCCCCeeeee---ccCCCCCCeeEEEeeCCCCCEEEEEEeC
Q 035558 78 DTQLIAHDKEVYDIAWG-GV--GVFASVSADGSVRVFDLRDKEHSTIIY---ESSEPDTPLVRLGWNKQDPRYMATIIMD 151 (253)
Q Consensus 78 ~~~~~~~~~~v~~~~~~-~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 151 (253)
++++.+|...|+++.|. .+ ..+++++.|..|.+ +...+.....++ ........++.|+..| +..++++++.|
T Consensus 540 ~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQD 617 (1080)
T KOG1408|consen 540 VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQD 617 (1080)
T ss_pred hhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeeeCC-CcceEEEEecc
Confidence 78899999999999999 54 68899999987654 443321111121 1122344899999999 89999999999
Q ss_pred CCeEEEEECCCCCCCeeeecc---cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCcee
Q 035558 152 SAKVVVLDIRFPTLPVVELQR---HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIE 228 (253)
Q Consensus 152 ~~~i~~~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 228 (253)
.+ |+|||+.++++ .+.|++ |++..-.+...|.| .|+++...|.++.++|.-+++... ..++|...|+
T Consensus 618 rn-irif~i~sgKq-~k~FKgs~~~eG~lIKv~lDPSg-iY~atScsdktl~~~Df~sgEcvA-------~m~GHsE~VT 687 (1080)
T KOG1408|consen 618 RN-IRIFDIESGKQ-VKSFKGSRDHEGDLIKVILDPSG-IYLATSCSDKTLCFVDFVSGECVA-------QMTGHSEAVT 687 (1080)
T ss_pred cc-eEEEeccccce-eeeecccccCCCceEEEEECCCc-cEEEEeecCCceEEEEeccchhhh-------hhcCcchhee
Confidence 99 99999999875 666654 66778889999999 799999999999999999998765 8899999999
Q ss_pred EEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 229 QLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
.+.|.+|-+.+++++.|+.|.||+|
T Consensus 688 G~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 688 GVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred eeeecccchhheeecCCceEEEEEC
Confidence 9999999999999999999999986
No 119
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3e-26 Score=166.50 Aligned_cols=211 Identities=16% Similarity=0.223 Sum_probs=181.7
Q ss_pred ccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeC
Q 035558 26 RVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSA 104 (253)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~ 104 (253)
..++.+.+.+|+ +.|..++.. .....+.+++.|.+.+||.+++++++..+.+|.+.|+++.|+ .+.++++++.
T Consensus 137 ~~~lvre~~GHk-----DGiW~Vaa~-~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSG 210 (481)
T KOG0300|consen 137 KFRLVRELEGHK-----DGIWHVAAD-STQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASG 210 (481)
T ss_pred eEeehhhhcccc-----cceeeehhh-cCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccC
Confidence 457788899999 899999987 667789999999999999999999999999999999999999 9999999999
Q ss_pred CCcEEEEEc------CCCC-------------------------------CeeeeeccCCCCCCeeEEEeeCCCCCEEEE
Q 035558 105 DGSVRVFDL------RDKE-------------------------------HSTIIYESSEPDTPLVRLGWNKQDPRYMAT 147 (253)
Q Consensus 105 dg~i~i~d~------~~~~-------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 147 (253)
|++-+||.. .++. ...++....+|.+.|.+..|-. .++.+++
T Consensus 211 D~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vT 289 (481)
T KOG0300|consen 211 DETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVT 289 (481)
T ss_pred CcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeee
Confidence 999999962 1100 0012233456777888888888 8999999
Q ss_pred EEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCce
Q 035558 148 IIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEI 227 (253)
Q Consensus 148 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v 227 (253)
++.|.. ..+||++++. ++..+.+|....+.++-+|.. +++++.+.|.+.++||++..-... ..+.+|...|
T Consensus 290 aSWDRT-AnlwDVEtge-~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI~sV------~VFQGHtdtV 360 (481)
T KOG0300|consen 290 ASWDRT-ANLWDVETGE-VVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAIQSV------AVFQGHTDTV 360 (481)
T ss_pred eecccc-ceeeeeccCc-eeccccCcchhccccccCCcc-eEEEEeccCceeEeccchhhccee------eeecccccce
Confidence 999998 9999999976 589999999999999999998 799999999999999999544332 5788999999
Q ss_pred eEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 228 EQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
+++.|..+.+ +++++.|..++||+|
T Consensus 361 TS~vF~~dd~-vVSgSDDrTvKvWdL 385 (481)
T KOG0300|consen 361 TSVVFNTDDR-VVSGSDDRTVKVWDL 385 (481)
T ss_pred eEEEEecCCc-eeecCCCceEEEeee
Confidence 9999998875 999999999999986
No 120
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.1e-25 Score=176.87 Aligned_cols=228 Identities=15% Similarity=0.222 Sum_probs=184.2
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce--ee-
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA--VD- 78 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~- 78 (253)
+++.|++++ | +|++|+.... . --+..+++.|. +.|.|++.-.++..++|+|+.|+.|.+||++++. .+
T Consensus 84 ~~~tlIS~SsDtTVK~W~~~~~-~-~~c~stir~H~-----DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~ 156 (735)
T KOG0308|consen 84 NGKTLISASSDTTVKVWNAHKD-N-TFCMSTIRTHK-----DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVA 156 (735)
T ss_pred CCCceEEecCCceEEEeecccC-c-chhHhhhhccc-----chheeeeecccCceeEEecCCCccEEEEEccCcchhhhh
Confidence 454555555 7 9999999874 1 35678899999 8999999933788999999999999999999772 22
Q ss_pred -------eeee-cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE
Q 035558 79 -------TQLI-AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII 149 (253)
Q Consensus 79 -------~~~~-~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 149 (253)
..+. ++..+|++++.+ .+..+++|+..+.+++||.++.+.... ..+|...|..+..++ +|+.+++++
T Consensus 157 s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk---LrGHTdNVr~ll~~d-DGt~~ls~s 232 (735)
T KOG0308|consen 157 SFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK---LRGHTDNVRVLLVND-DGTRLLSAS 232 (735)
T ss_pred hccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceee---eeccccceEEEEEcC-CCCeEeecC
Confidence 2233 788999999999 888999999999999999999884333 348888999999999 999999999
Q ss_pred eCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeE
Q 035558 150 MDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQ 229 (253)
Q Consensus 150 ~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~ 229 (253)
.|+. |++||+.... ++.++..|...|+++..+|+- ..+++|+.||.|..=|+++..... ..+....+|..
T Consensus 233 SDgt-IrlWdLgqQr-Cl~T~~vH~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~~~~t-------lick~daPv~~ 302 (735)
T KOG0308|consen 233 SDGT-IRLWDLGQQR-CLATYIVHKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNPAKST-------LICKEDAPVLK 302 (735)
T ss_pred CCce-EEeeeccccc-eeeeEEeccCceEEEeeCCCc-ceEEecCCCCcEEecccCCchhhe-------EeecCCCchhh
Confidence 9999 9999999755 689999999999999999998 699999999999999999864332 45555666777
Q ss_pred EEEcCCCCceEEEEcCCcEEEEE
Q 035558 230 LQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
+..+.....+=++..|+.|+-|.
T Consensus 303 l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 303 LHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred hhhccccCCceeeeccccceecC
Confidence 76664444444556666666664
No 121
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.94 E-value=3.3e-25 Score=173.76 Aligned_cols=232 Identities=21% Similarity=0.328 Sum_probs=170.8
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeee--ecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSL--LNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA--- 76 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--- 76 (253)
....|++++ | ++++||+... ++... +.+|. ..|.+++|.|.+...|++|+.||.|.|||++-..
T Consensus 111 ge~~lVsasGDsT~r~Wdvk~s----~l~G~~~~~GH~-----~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~ 181 (720)
T KOG0321|consen 111 GESLLVSASGDSTIRPWDVKTS----RLVGGRLNLGHT-----GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA 181 (720)
T ss_pred CceeEEEccCCceeeeeeeccc----eeecceeecccc-----cccchhhhccCCCcceeeccCCCcEEEEEEeccchhh
Confidence 334555554 6 9999999986 66655 88999 9999999998899999999999999999986421
Q ss_pred ------------------------eeeeeecccccEEE----EEecCCCeEEEEeC-CCcEEEEEcCCCCCeee-----e
Q 035558 77 ------------------------VDTQLIAHDKEVYD----IAWGGVGVFASVSA-DGSVRVFDLRDKEHSTI-----I 122 (253)
Q Consensus 77 ------------------------~~~~~~~~~~~v~~----~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~-----~ 122 (253)
.+...+.+...|.+ +.|-|...||+++. |+.|++||++....... .
T Consensus 182 ~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~ 261 (720)
T KOG0321|consen 182 LEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGS 261 (720)
T ss_pred HHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcc
Confidence 01111233344444 44448999999988 99999999998753211 1
Q ss_pred eccCCC---CCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC-CCeeeecccccc--eeEEEEecCCCCeEEEecCC
Q 035558 123 YESSEP---DTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT-LPVVELQRHQAS--VNAIAWAPHSSCHICTAGDD 196 (253)
Q Consensus 123 ~~~~~~---~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~--i~~~~~~~~~~~~l~~~~~d 196 (253)
.....+ .-.+.++.... .|.++.+.+.|+. |++|+++... .|+..+.++... -..-..+|++ .+|++|+.|
T Consensus 262 ~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~s-Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~-~~l~SgSsd 338 (720)
T KOG0321|consen 262 DKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNS-IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDD-CSLLSGSSD 338 (720)
T ss_pred cCccCcccceeeeEEEEecC-CCCeEEEEecCCc-EEEEeccccCcCchhhccCcccceeeeeeecCCCC-ceEeccCCC
Confidence 111112 22567777776 6777777777998 9999998755 345555544321 2223568998 699999999
Q ss_pred CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC-ceEEEEcCCcEEEEEC
Q 035558 197 SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP-DWVAIAFSTKLQILRV 253 (253)
Q Consensus 197 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~vw~l 253 (253)
...++|.+.+.+.+. ..+.+|...|+.++|.|..- -+++++.|..+++|++
T Consensus 339 ~~ayiw~vs~~e~~~------~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 339 EQAYIWVVSSPEAPP------ALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred cceeeeeecCccCCh------hhhhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence 999999999988654 68889999999999987532 3778899999999986
No 122
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=3.5e-25 Score=159.25 Aligned_cols=204 Identities=19% Similarity=0.294 Sum_probs=160.3
Q ss_pred CCCCCceEEeec-C-cEEEEEccCCcc--c----cceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEec
Q 035558 1 ECQKPDLLATSS-D-FLRVWRISDEDR--R----VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDI 72 (253)
Q Consensus 1 sp~~~~~l~~~~-~-~v~iw~~~~~~~--~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 72 (253)
+|..++++++|+ | .+.+||++...+ . .+....+....+..|...|.++.|-|.+...+.+++.|.+++|||.
T Consensus 52 d~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDt 131 (397)
T KOG4283|consen 52 DLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDT 131 (397)
T ss_pred ccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeec
Confidence 366788888887 5 999999976421 0 1111212222223344899999999888899999999999999999
Q ss_pred cCceeeeeeecccccEEEEEec----CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558 73 EREAVDTQLIAHDKEVYDIAWG----GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI 148 (253)
Q Consensus 73 ~~~~~~~~~~~~~~~v~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 148 (253)
.+.+....++ -++.|++-+++ ...++|+|..|-.|++.|+.++..... ..+|...|.++.|+|...-.|++|
T Consensus 132 nTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~---LsGHr~~vlaV~Wsp~~e~vLatg 207 (397)
T KOG4283|consen 132 NTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT---LSGHRDGVLAVEWSPSSEWVLATG 207 (397)
T ss_pred ccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee---eccccCceEEEEeccCceeEEEec
Confidence 9988777776 56788888887 355788888999999999999985444 457888999999999777889999
Q ss_pred EeCCCeEEEEECCCCCCCeee--------------ecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCC
Q 035558 149 IMDSAKVVVLDIRFPTLPVVE--------------LQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQP 210 (253)
Q Consensus 149 ~~~~~~i~~~d~~~~~~~~~~--------------~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 210 (253)
+.|+. |++||+|....+... -..|.+.+++++|..++ .++++++.|..+++|+..++...
T Consensus 208 saDg~-irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~-~~l~~~gtd~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 208 SADGA-IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA-RYLASCGTDDRIRVWNMESGRNT 281 (397)
T ss_pred CCCce-EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc-hhhhhccCccceEEeecccCccc
Confidence 99999 999999865322222 33577889999999999 69999999999999999988744
No 123
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=3.1e-25 Score=167.70 Aligned_cols=235 Identities=17% Similarity=0.254 Sum_probs=178.3
Q ss_pred CCCC-ceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee-
Q 035558 2 CQKP-DLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV- 77 (253)
Q Consensus 2 p~~~-~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~- 77 (253)
|... .++|+|.. .|-+||+........-+..+..|. .+|.++.|+|.+...+++.+.||+|++-|++.+..
T Consensus 196 Pt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs-----~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e 270 (498)
T KOG4328|consen 196 PTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHS-----GPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISE 270 (498)
T ss_pred ccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCC-----ccccceEecCCChhheeeeccCceeeeeeecchhhH
Confidence 4444 67777775 999999965434445667778888 89999999998999999999999999999987653
Q ss_pred -eeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558 78 -DTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV 155 (253)
Q Consensus 78 -~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i 155 (253)
+..+......+.++.|+ +...++.+..=|.+.+||+++++.. ......|+..|++++++|....+||+++.|+. +
T Consensus 271 ~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~--~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T-~ 347 (498)
T KOG4328|consen 271 EVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE--YENLRLHKKKITSVALNPVCPWFLATASLDQT-A 347 (498)
T ss_pred HHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc--chhhhhhhcccceeecCCCCchheeecccCcc-e
Confidence 33333345567788888 7777778877779999999998732 33333455599999999999999999999999 9
Q ss_pred EEEECCCCCC---CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEecc---CCCCCCCCCCCCeeeccCCC----
Q 035558 156 VVLDIRFPTL---PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLS---SMGQPVEGGLDPILAYTAGA---- 225 (253)
Q Consensus 156 ~~~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~---- 225 (253)
+|||+|.... |......|...|.+..|+|.+. .|+|.+.|..|+|||.. ....+. ....|..
T Consensus 348 kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g-tl~TT~~D~~IRv~dss~~sa~~~p~-------~~I~Hn~~t~R 419 (498)
T KOG4328|consen 348 KIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG-TLLTTCQDNEIRVFDSSCISAKDEPL-------GTIPHNNRTGR 419 (498)
T ss_pred eeeehhhhcCCCCcceecccccceeeeeEEcCCCC-ceEeeccCCceEEeecccccccCCcc-------ceeeccCcccc
Confidence 9999997542 3445567999999999999996 59999999999999995 222222 3333321
Q ss_pred --ceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 226 --EIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 226 --~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
.....+|.|+..+++.+..-..|-|++
T Consensus 420 wlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 420 WLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred cccchhheeCCCccEEEEeccCcceeEEc
Confidence 223557999988666776666666654
No 124
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=4.1e-27 Score=186.73 Aligned_cols=210 Identities=16% Similarity=0.304 Sum_probs=182.1
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEe
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAW 93 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 93 (253)
.+++|+... +..|. ..+.++..- ...+.+++|+.|-.+-+|.+.....+..+.+|..+|.++.|
T Consensus 15 ~Lr~~~~~~----------~~~hs-----aav~~lk~~-~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f 78 (825)
T KOG0267|consen 15 KLRVWDTRE----------FVAHS-----AAVGCLKIR-KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTF 78 (825)
T ss_pred ccccccchh----------hhhhh-----hhhceeeee-ccceeeccCCCceeeccccccCCchhheeeccCCcceeeec
Confidence 677777655 23455 667777664 77899999999999999999877777789999999999999
Q ss_pred c-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc
Q 035558 94 G-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR 172 (253)
Q Consensus 94 ~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 172 (253)
+ ...+|++|+.+|+|++||++..+. +....+|...+.++.|+| -+.++|.++.|.. +++||.+... +.+.+.+
T Consensus 79 ~~~E~LlaagsasgtiK~wDleeAk~---vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd-~~iwD~Rk~G-c~~~~~s 152 (825)
T KOG0267|consen 79 DTSERLLAAGSASGTIKVWDLEEAKI---VRTLTGHLLNITSVDFHP-YGEFFASGSTDTD-LKIWDIRKKG-CSHTYKS 152 (825)
T ss_pred CcchhhhcccccCCceeeeehhhhhh---hhhhhccccCcceeeecc-ceEEecccccccc-ceehhhhccC-ceeeecC
Confidence 9 999999999999999999998874 345567777999999999 8999999999999 9999999755 5889999
Q ss_pred cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 173 HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 173 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
|...+..+.|+|+| ++++.+++|..++|||+..++... .+..|..++..+.|+|..-.+..++.|..+++|+
T Consensus 153 ~~~vv~~l~lsP~G-r~v~~g~ed~tvki~d~~agk~~~-------ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~d 224 (825)
T KOG0267|consen 153 HTRVVDVLRLSPDG-RWVASGGEDNTVKIWDLTAGKLSK-------EFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWD 224 (825)
T ss_pred CcceeEEEeecCCC-ceeeccCCcceeeeeccccccccc-------ccccccccccccccCchhhhhccCCCCceeeeec
Confidence 99999999999999 799999999999999999887543 6677999999999999986556899999999998
Q ss_pred C
Q 035558 253 V 253 (253)
Q Consensus 253 l 253 (253)
|
T Consensus 225 l 225 (825)
T KOG0267|consen 225 L 225 (825)
T ss_pred c
Confidence 6
No 125
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.6e-25 Score=166.73 Aligned_cols=199 Identities=21% Similarity=0.385 Sum_probs=162.8
Q ss_pred CeeEEEecC------CCCCEEEEEeCCCeEEEEeccCcee---------------------eeeeecccccEEEEEec--
Q 035558 44 PLTSFDWNE------AEPRRIGTSSIDTTCTIWDIEREAV---------------------DTQLIAHDKEVYDIAWG-- 94 (253)
Q Consensus 44 ~v~~~~~~~------~~~~~l~~~~~dg~i~vwd~~~~~~---------------------~~~~~~~~~~v~~~~~~-- 94 (253)
...|+.|.. ..++++|.|+.|..|.|||+.-... -....+|+..|.+|+|+
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~ 254 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN 254 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence 345777742 2368999999999999999863210 00123688899999999
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccc
Q 035558 95 GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQ 174 (253)
Q Consensus 95 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 174 (253)
-.+.|++||.|.+|++||+.++++...+. .|.+.|.+++|+|..+.+|++|++|++ |.+.|.|.....-..++ -.
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~---~~~k~Vq~l~wh~~~p~~LLsGs~D~~-V~l~D~R~~~~s~~~wk-~~ 329 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSIT---HHGKKVQTLEWHPYEPSVLLSGSYDGT-VALKDCRDPSNSGKEWK-FD 329 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceehh---hcCCceeEEEecCCCceEEEeccccce-EEeeeccCccccCceEE-ec
Confidence 77899999999999999999998655553 566799999999999999999999999 99999996443222222 35
Q ss_pred cceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE-EEEcCCcEEEEEC
Q 035558 175 ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV-AIAFSTKLQILRV 253 (253)
Q Consensus 175 ~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~vw~l 253 (253)
+.|-.++|.|..+..++++..||+++-+|+|+...+. .....|..+|.+|++++..+.++ +++.++.+++|++
T Consensus 330 g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~v------wt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~ 403 (463)
T KOG0270|consen 330 GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPV------WTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKF 403 (463)
T ss_pred cceEEEEecCCCceeEEEecCCceEEeeecCCCCCce------eEEEeccCCcceEEecCCCCcceeeccccceEEEEee
Confidence 6789999999998889999999999999999988665 68889999999999999887766 6888999999985
No 126
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.94 E-value=2.2e-24 Score=157.10 Aligned_cols=238 Identities=13% Similarity=0.229 Sum_probs=182.6
Q ss_pred CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCC----CCEEEEEeCCCeEEEEeccCceee
Q 035558 4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAE----PRRIGTSSIDTTCTIWDIEREAVD 78 (253)
Q Consensus 4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~dg~i~vwd~~~~~~~ 78 (253)
....+|+.+. .+.+|..... .-++.++.....++......++|+ -+ ..++|+|+.-|.|+|.|+.+++..
T Consensus 54 e~~vfatvG~~rvtiy~c~~d----~~ir~lq~y~D~d~~Esfytcsw~-yd~~~~~p~la~~G~~GvIrVid~~~~~~~ 128 (385)
T KOG1034|consen 54 EPQVFATVGGNRVTIYECPGD----GGIRLLQSYADEDHDESFYTCSWS-YDSNTGNPFLAAGGYLGVIRVIDVVSGQCS 128 (385)
T ss_pred CCceEEEeCCcEEEEEEECCc----cceeeeeeccCCCCCcceEEEEEE-ecCCCCCeeEEeecceeEEEEEecchhhhc
Confidence 4567888877 9999998775 223333333333333678888886 32 457888889999999999999999
Q ss_pred eeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558 79 TQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV 156 (253)
Q Consensus 79 ~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~ 156 (253)
..+.+|...|+.+.++ ..+++++++.|..|++|++++..++.++....+|...|.++.|++ ++.+|++++.|.. ++
T Consensus 129 ~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhs-lk 206 (385)
T KOG1034|consen 129 KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHS-LK 206 (385)
T ss_pred cceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC-CCCeeeccCCcce-EE
Confidence 9999999999999999 788999999999999999999999988888899999999999999 8999999999999 99
Q ss_pred EEECCCCCC--------------------------Cee-eeccc------------------------------------
Q 035558 157 VLDIRFPTL--------------------------PVV-ELQRH------------------------------------ 173 (253)
Q Consensus 157 ~~d~~~~~~--------------------------~~~-~~~~~------------------------------------ 173 (253)
+|++...+. |.. +-..|
T Consensus 207 ~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~ 286 (385)
T KOG1034|consen 207 LWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIH 286 (385)
T ss_pred EEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhh
Confidence 999973210 000 00001
Q ss_pred ------------------ccceeEE--EEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEc
Q 035558 174 ------------------QASVNAI--AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWS 233 (253)
Q Consensus 174 ------------------~~~i~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 233 (253)
...|+-+ +|.|.+ +.|+.|...|.|.+||++....+. ............|...+|+
T Consensus 287 ~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~~ep~~---~ttl~~s~~~~tVRQ~sfS 362 (385)
T KOG1034|consen 287 NVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDNNEPPK---CTTLTHSKSGSTVRQTSFS 362 (385)
T ss_pred ccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCCCCCcc---CceEEeccccceeeeeeec
Confidence 1122222 345555 589999999999999999876432 1112223346789999999
Q ss_pred CCCCceEEEEcCCcEEEEE
Q 035558 234 SSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 234 ~~~~~~~~~~~~~~i~vw~ 252 (253)
.++..+++++.|+.|--|+
T Consensus 363 ~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 363 RDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred ccCcEEEEEeCCCcEEEEE
Confidence 9999999999999888776
No 127
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.94 E-value=6.2e-25 Score=167.99 Aligned_cols=209 Identities=14% Similarity=0.279 Sum_probs=176.9
Q ss_pred ceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec
Q 035558 6 DLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA 83 (253)
Q Consensus 6 ~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 83 (253)
.++++|+. .|+|||+... .+.+.+++|+ ..|+++.++ .+..+||+++..|.|.|..+.++.....+..
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~k----l~hr~lkdh~-----stvt~v~YN-~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~ 161 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAK----LIHRFLKDHQ-----STVTYVDYN-NTDEYIASVSDGGDIIIHGTKTKQKTTTFTI 161 (673)
T ss_pred eeeeccCcCceeeehhhHHH----HHhhhccCCc-----ceeEEEEec-CCcceeEEeccCCcEEEEecccCccccceec
Confidence 46667663 9999999975 7788899999 899999999 8899999999999999999998887777763
Q ss_pred c-cccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558 84 H-DKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160 (253)
Q Consensus 84 ~-~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~ 160 (253)
. ...|.-+.|+ ...+|.+++.+|.|.+||+....+ .......|..+...++|+|.+..+|++.+.|.. |.+||.
T Consensus 162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp--~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk-i~~yD~ 238 (673)
T KOG4378|consen 162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP--IFHASEAHSAPCRGICFSPSNEALLVSVGYDKK-INIYDI 238 (673)
T ss_pred CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc--ccchhhhccCCcCcceecCCccceEEEecccce-EEEeec
Confidence 3 3556789999 666888999999999999987763 233345677799999999999999999999999 999999
Q ss_pred CCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC
Q 035558 161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ 236 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 236 (253)
+.... ...+. ...+...++|.++| .+|+.|...|.|..||++..+.|. .....|...|++++|-|.-
T Consensus 239 ~s~~s-~~~l~-y~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~~k~Pv------~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 239 RSQAS-TDRLT-YSHPLSTVAFSECG-TYLCAGNSKGELIAYDMRSTKAPV------AVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ccccc-cceee-ecCCcceeeecCCc-eEEEeecCCceEEEEecccCCCCc------eEeeecccceeEEEeeecc
Confidence 96542 44443 46789999999999 699999999999999999998876 6788899999999998864
No 128
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=5.5e-24 Score=173.06 Aligned_cols=227 Identities=17% Similarity=0.275 Sum_probs=177.4
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
+|++|.+++ + .|++|+.......++ ++..+. ..|.+++.. .++|++|+.+++|.+|.+..++.-..+
T Consensus 24 ~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g-----~~v~~ia~~---s~~f~~~s~~~tv~~y~fps~~~~~iL 92 (933)
T KOG1274|consen 24 DGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISG-----ELVSSIACY---SNHFLTGSEQNTVLRYKFPSGEEDTIL 92 (933)
T ss_pred CCCEEEEecCCCceEEeecCCcccCCc---hhhccC-----ceeEEEeec---ccceEEeeccceEEEeeCCCCCcccee
Confidence 455666655 6 999999866411122 222244 678888754 668999999999999999888766556
Q ss_pred ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558 82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160 (253)
Q Consensus 82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~ 160 (253)
...+-++++++|+ +|++++.|+.|-.|++.++...... ....+|+++|.++.|+| .+++||+.+.||. |++||+
T Consensus 93 ~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~---~~lrgh~apVl~l~~~p-~~~fLAvss~dG~-v~iw~~ 167 (933)
T KOG1274|consen 93 ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE---KVLRGHDAPVLQLSYDP-KGNFLAVSSCDGK-VQIWDL 167 (933)
T ss_pred eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh---eeecccCCceeeeeEcC-CCCEEEEEecCce-EEEEEc
Confidence 5667899999999 9999999999999999999887643 33457778999999999 9999999999999 999999
Q ss_pred CCCCCCeeeecc--------cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEE
Q 035558 161 RFPTLPVVELQR--------HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQW 232 (253)
Q Consensus 161 ~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 232 (253)
.++.. .+.+.+ ....+..++|+|++. .|+..+.|+.|++|+........ ......+...+..++|
T Consensus 168 ~~~~~-~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~~we~~f-----~Lr~~~~ss~~~~~~w 240 (933)
T KOG1274|consen 168 QDGIL-SKTLTGVDKDNEFILSRICTRLAWHPKGG-TLAVPPVDNTVKVYSRKGWELQF-----KLRDKLSSSKFSDLQW 240 (933)
T ss_pred ccchh-hhhcccCCccccccccceeeeeeecCCCC-eEEeeccCCeEEEEccCCceehe-----eecccccccceEEEEE
Confidence 87652 222221 144678899999985 77777889999999999887654 1122234555999999
Q ss_pred cCCCCceEEEEcCCcEEEEEC
Q 035558 233 SSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 233 ~~~~~~~~~~~~~~~i~vw~l 253 (253)
+|.|+|++|++.++.|.||++
T Consensus 241 sPnG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 241 SPNGKYIAASTLDGQILVWNV 261 (933)
T ss_pred cCCCcEEeeeccCCcEEEEec
Confidence 999999999999999999985
No 129
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.7e-24 Score=155.53 Aligned_cols=209 Identities=22% Similarity=0.290 Sum_probs=152.9
Q ss_pred eeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---------------------------------
Q 035558 30 KSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA--------------------------------- 76 (253)
Q Consensus 30 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--------------------------------- 76 (253)
...+++|. ..|++++|+ .+|..|++++.|+.|++|+++..+
T Consensus 79 ~~~LKgH~-----~~vt~~~Fs-SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~ 152 (420)
T KOG2096|consen 79 VSVLKGHK-----KEVTDVAFS-SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK 152 (420)
T ss_pred hhhhhccC-----CceeeeEEc-CCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc
Confidence 45688898 899999999 999999999999999999987521
Q ss_pred ---eeeee-----------------------ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCC
Q 035558 77 ---VDTQL-----------------------IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPD 129 (253)
Q Consensus 77 ---~~~~~-----------------------~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 129 (253)
.+..+ +.|.-.+..+-.. ++.++++++.|..|.+|+++ ++....+. ...
T Consensus 153 ~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~id---tnq 228 (420)
T KOG2096|consen 153 RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSID---TNQ 228 (420)
T ss_pred cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeec---ccc
Confidence 00000 0122334344444 66789999999999999999 54333332 223
Q ss_pred CCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC-------CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEE
Q 035558 130 TPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT-------LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIW 202 (253)
Q Consensus 130 ~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iw 202 (253)
..-+..+.+| +|+++++++..-- |++|..--.+ ..+.++.+|...|..++|+|+. ..+++.|.||+++||
T Consensus 229 ~~n~~aavSP-~GRFia~~gFTpD-VkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S-~r~vtvSkDG~wriw 305 (420)
T KOG2096|consen 229 SSNYDAAVSP-DGRFIAVSGFTPD-VKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS-TRAVTVSKDGKWRIW 305 (420)
T ss_pred ccccceeeCC-CCcEEEEecCCCC-ceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc-ceeEEEecCCcEEEe
Confidence 3556788999 9999999999888 9999863221 2367789999999999999998 699999999999999
Q ss_pred eccCCC----CCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 203 DLSSMG----QPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 203 d~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
|+.-.. .|......+..+...++....++.+|.++ .++.+....++++.
T Consensus 306 dtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~-~lA~s~gs~l~~~~ 358 (420)
T KOG2096|consen 306 DTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD-SLAVSFGSDLKVFA 358 (420)
T ss_pred eccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc-EEEeecCCceEEEE
Confidence 986432 22211122223333455556999999997 77888888888764
No 130
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=5.4e-24 Score=171.56 Aligned_cols=218 Identities=14% Similarity=0.186 Sum_probs=177.2
Q ss_pred cEEEEEccCCccccce-eeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee---ecccccEE
Q 035558 14 FLRVWRISDEDRRVEL-KSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL---IAHDKEVY 89 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~ 89 (253)
..+.|++.+. .. ...+....-......+++++.+ +.|++.+.|+..|.|-+|++++|-....+ +.|.++|+
T Consensus 423 ~~~tW~~~n~----~~G~~~L~~~~~~~~~~~~~av~vs-~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~ 497 (910)
T KOG1539|consen 423 SAYTWNFRNK----TSGRHVLDPKRFKKDDINATAVCVS-FCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVT 497 (910)
T ss_pred eEEEEeccCc----ccccEEecCccccccCcceEEEEEe-ccCceEEEeccCCeEEEEEcccCeeecccccCccccCcee
Confidence 8999999874 22 1222222111122578899999 88999999999999999999999888877 58999999
Q ss_pred EEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCee
Q 035558 90 DIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVV 168 (253)
Q Consensus 90 ~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~ 168 (253)
+++.. -++.+++++.+|.+++||+.+......+ .-...+..+..+. ....++.+..+-. |.++|..+.+. +.
T Consensus 498 gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l----~l~~~~~~iv~hr-~s~l~a~~~ddf~-I~vvD~~t~kv-vR 570 (910)
T KOG1539|consen 498 GLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSL----RLGSSITGIVYHR-VSDLLAIALDDFS-IRVVDVVTRKV-VR 570 (910)
T ss_pred EEEecCCCceEEEccCcceEEEEecCCcceeeee----ccCCCcceeeeee-hhhhhhhhcCcee-EEEEEchhhhh-hH
Confidence 99999 8889999999999999999987632222 2233677888887 7778888887777 99999998664 88
Q ss_pred eecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcC-Cc
Q 035558 169 ELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFS-TK 247 (253)
Q Consensus 169 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~ 247 (253)
.+.+|...|++++|+|+| ++|++++.|++|++||+.++... ....-..+++++.|+|+|.+|+++..| +.
T Consensus 571 ~f~gh~nritd~~FS~Dg-rWlisasmD~tIr~wDlpt~~lI--------D~~~vd~~~~sls~SPngD~LAT~Hvd~~g 641 (910)
T KOG1539|consen 571 EFWGHGNRITDMTFSPDG-RWLISASMDSTIRTWDLPTGTLI--------DGLLVDSPCTSLSFSPNGDFLATVHVDQNG 641 (910)
T ss_pred HhhccccceeeeEeCCCC-cEEEEeecCCcEEEEeccCccee--------eeEecCCcceeeEECCCCCEEEEEEecCce
Confidence 999999999999999999 79999999999999999998743 344457899999999999988888777 78
Q ss_pred EEEEE
Q 035558 248 LQILR 252 (253)
Q Consensus 248 i~vw~ 252 (253)
|.+|-
T Consensus 642 IylWs 646 (910)
T KOG1539|consen 642 IYLWS 646 (910)
T ss_pred EEEEE
Confidence 88884
No 131
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=1.1e-24 Score=179.85 Aligned_cols=193 Identities=18% Similarity=0.303 Sum_probs=159.4
Q ss_pred CCeeEEEecCCCCCEEEEEe--CCCeEEEEeccC------------ceeeeeeecccccEEEEEec-CCCeEEEEeCCCc
Q 035558 43 GPLTSFDWNEAEPRRIGTSS--IDTTCTIWDIER------------EAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGS 107 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~------------~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~ 107 (253)
..|.++..+ |++..+++|+ .||.++||+.+. .+.+..+..|.+.|.|+.|+ +|++||+|++|+.
T Consensus 14 ~~IfSIdv~-pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 14 KSIFSIDVH-PDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred eeEEEEEec-CCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 679999999 9999999999 899999998753 12445566899999999999 9999999999999
Q ss_pred EEEEEcCCC---------------CCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc
Q 035558 108 VRVFDLRDK---------------EHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR 172 (253)
Q Consensus 108 i~i~d~~~~---------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 172 (253)
|.+|+.... +..+......+|...|..++|+| ++.++++++.|+. |.+|+.++. ..+..+.+
T Consensus 93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~Dns-Viiwn~~tF-~~~~vl~~ 169 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNS-VIIWNAKTF-ELLKVLRG 169 (942)
T ss_pred EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccce-EEEEccccc-eeeeeeec
Confidence 999998730 11234445567888999999999 9999999999999 999999998 56999999
Q ss_pred cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558 173 HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA 241 (253)
Q Consensus 173 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 241 (253)
|...|-.+.|.|-| +||++-+.|++|+||++....... ...+|.........+..+.|||||.+|++
T Consensus 170 H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k-~It~pf~~~~~~T~f~RlSWSPDG~~las 236 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEK-SITKPFEESPLTTFFLRLSWSPDGHHLAS 236 (942)
T ss_pred ccccccceEECCcc-CeeeeecCCceEEEEEcccceeeE-eeccchhhCCCcceeeecccCCCcCeecc
Confidence 99999999999999 799999999999999977643211 00122233345677899999999997774
No 132
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.7e-24 Score=159.73 Aligned_cols=205 Identities=11% Similarity=0.158 Sum_probs=171.5
Q ss_pred ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---eeeeeecccccEEEEEec-CCCeEEEEe
Q 035558 28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---VDTQLIAHDKEVYDIAWG-GVGVFASVS 103 (253)
Q Consensus 28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~-~~~~l~~~~ 103 (253)
+..+++..|. ..|.-+.|+ ++|++||+++.|.+..+|++.... ...++.+|..+|..+.|+ +.+++++|+
T Consensus 215 qt~qil~~ht-----dEVWfl~FS-~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg 288 (519)
T KOG0293|consen 215 QTWQILQDHT-----DEVWFLQFS-HNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACG 288 (519)
T ss_pred hhhhhHhhCC-----CcEEEEEEc-CCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecC
Confidence 4556777888 899999999 999999999999999999876543 577888999999999999 999999999
Q ss_pred CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccc-ccceeEEEE
Q 035558 104 ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRH-QASVNAIAW 182 (253)
Q Consensus 104 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~i~~~~~ 182 (253)
.|..+.+||..++......... +...+.+++|.| ++..+++|+.|++ +..||+.... ....++- ...|.+++.
T Consensus 289 ~~e~~~lwDv~tgd~~~~y~~~--~~~S~~sc~W~p-Dg~~~V~Gs~dr~-i~~wdlDgn~--~~~W~gvr~~~v~dlai 362 (519)
T KOG0293|consen 289 FDEVLSLWDVDTGDLRHLYPSG--LGFSVSSCAWCP-DGFRFVTGSPDRT-IIMWDLDGNI--LGNWEGVRDPKVHDLAI 362 (519)
T ss_pred chHheeeccCCcchhhhhcccC--cCCCcceeEEcc-CCceeEecCCCCc-EEEecCCcch--hhcccccccceeEEEEE
Confidence 9999999999999854433222 445899999999 9999999999998 9999998643 3333332 246899999
Q ss_pred ecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 183 APHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 183 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
.+|| +++++.+.|..|++|+.+..... .......+|++++.|.++++++..=.+..+++|++
T Consensus 363 t~Dg-k~vl~v~~d~~i~l~~~e~~~dr--------~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl 424 (519)
T KOG0293|consen 363 TYDG-KYVLLVTVDKKIRLYNREARVDR--------GLISEEQPITSFSISKDGKLALVNLQDQEIHLWDL 424 (519)
T ss_pred cCCC-cEEEEEecccceeeechhhhhhh--------ccccccCceeEEEEcCCCcEEEEEcccCeeEEeec
Confidence 9999 68888889999999999875432 24456779999999999998888889999999986
No 133
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=2.2e-24 Score=165.06 Aligned_cols=221 Identities=16% Similarity=0.192 Sum_probs=174.8
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEe
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAW 93 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 93 (253)
.+++|.-+..-.....+....+.. -.|++.. ....++++|+..+.|+|||++...+.+.+++|+..|+++.+
T Consensus 58 ~~~~~~K~g~~~~Vp~~~k~~gd~-------~~Cv~~~-s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~Y 129 (673)
T KOG4378|consen 58 VMRIKEKDGKTPEVPRVRKLTGDN-------AFCVACA-SQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDY 129 (673)
T ss_pred eEEEecccCCCCccceeeccccch-------HHHHhhh-hcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEe
Confidence 889998765312223333333332 3355444 45588999999999999999977777888999999999999
Q ss_pred c-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc
Q 035558 94 G-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR 172 (253)
Q Consensus 94 ~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 172 (253)
+ ...+||+++..|-|.+..+.++.....+.... ...+.-+.|+|....+|.+++.+|. |.+||.............
T Consensus 130 N~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s--gqsvRll~ys~skr~lL~~asd~G~-VtlwDv~g~sp~~~~~~~ 206 (673)
T KOG4378|consen 130 NNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS--GQSVRLLRYSPSKRFLLSIASDKGA-VTLWDVQGMSPIFHASEA 206 (673)
T ss_pred cCCcceeEEeccCCcEEEEecccCccccceecCC--CCeEEEeecccccceeeEeeccCCe-EEEEeccCCCcccchhhh
Confidence 9 99999999999999999999887544443322 2367789999966667777777777 999999887655566778
Q ss_pred cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 173 HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 173 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
|..+...++|+|..+.+|++.+.|..|.+||.+..... .......|...++|+++|.+|+++...|.+..|+
T Consensus 207 HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~--------~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 207 HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST--------DRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYD 278 (673)
T ss_pred ccCCcCcceecCCccceEEEecccceEEEeeccccccc--------ceeeecCCcceeeecCCceEEEeecCCceEEEEe
Confidence 99999999999998889999999999999999975532 2333466899999999999888999999999988
Q ss_pred C
Q 035558 253 V 253 (253)
Q Consensus 253 l 253 (253)
|
T Consensus 279 ~ 279 (673)
T KOG4378|consen 279 M 279 (673)
T ss_pred c
Confidence 6
No 134
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.5e-24 Score=168.05 Aligned_cols=187 Identities=18% Similarity=0.323 Sum_probs=158.9
Q ss_pred CceEEeecC--cEEEEEccCCccccceee-eecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 5 PDLLATSSD--FLRVWRISDEDRRVELKS-LLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 5 ~~~l~~~~~--~v~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
...+.+|+. .|..+|+... +... .+++|. ..|..+.|+ +++.++|+|+.|+.+.|||....++...+
T Consensus 270 ~~~lssGsr~~~I~~~dvR~~----~~~~~~~~~H~-----qeVCgLkws-~d~~~lASGgnDN~~~Iwd~~~~~p~~~~ 339 (484)
T KOG0305|consen 270 SSVLSSGSRDGKILNHDVRIS----QHVVSTLQGHR-----QEVCGLKWS-PDGNQLASGGNDNVVFIWDGLSPEPKFTF 339 (484)
T ss_pred CceEEEecCCCcEEEEEEecc----hhhhhhhhccc-----ceeeeeEEC-CCCCeeccCCCccceEeccCCCccccEEE
Confidence 456677774 9999999886 3222 488898 899999999 99999999999999999999888888899
Q ss_pred ecccccEEEEEec--CCCeEEEEe--CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558 82 IAHDKEVYDIAWG--GVGVFASVS--ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV 157 (253)
Q Consensus 82 ~~~~~~v~~~~~~--~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~ 157 (253)
..|...|.+++|+ ...+||+|+ .|+.|++||..++.....+ .....|++|.|++....++.+-++....|.|
T Consensus 340 ~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v----dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~l 415 (484)
T KOG0305|consen 340 TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV----DTGSQVCSLIWSKKYKELLSTHGYSENQITL 415 (484)
T ss_pred eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc----ccCCceeeEEEcCCCCEEEEecCCCCCcEEE
Confidence 9999999999999 888999975 5999999999988744433 3344899999999555666666665556999
Q ss_pred EECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCC
Q 035558 158 LDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM 207 (253)
Q Consensus 158 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 207 (253)
|+..+.+. +..+.+|...|..++++|+| ..+++|+.|.++++|++-..
T Consensus 416 w~~ps~~~-~~~l~gH~~RVl~la~SPdg-~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 416 WKYPSMKL-VAELLGHTSRVLYLALSPDG-ETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred Eeccccce-eeeecCCcceeEEEEECCCC-CEEEEecccCcEEeccccCC
Confidence 99998664 88999999999999999999 59999999999999999774
No 135
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.93 E-value=1.8e-24 Score=170.16 Aligned_cols=114 Identities=17% Similarity=0.258 Sum_probs=102.5
Q ss_pred CeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC------CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEec
Q 035558 131 PLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT------LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDL 204 (253)
Q Consensus 131 ~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~ 204 (253)
.|+.+.|+|.+...||+++.|+. |++|.+.... .|...+..|...|+++.|+|-....|++++.|.+|++||+
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~-i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQ-INLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred eeeecccCCCChHHeeecccCce-EEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 57889999999999999999998 9999987643 3567788999999999999977679999999999999999
Q ss_pred cCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 205 SSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
++..... .+.+|.+.|.+++|+|+|+.+++++.|+.++|++
T Consensus 708 ~~~~~~~-------~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 708 ANAKLYS-------RLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred hhhhhhh-------eeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 9987554 8889999999999999999999999999999986
No 136
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=1e-22 Score=156.12 Aligned_cols=233 Identities=15% Similarity=0.253 Sum_probs=171.7
Q ss_pred CCCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 2 CQKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 2 p~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
|.+.+++++++. .+.+|++..+ .-.+....++.++. .-|.|++|. ++++ +++|..+|.|.||+..+.+..+.
T Consensus 210 Ptd~nliit~Gk~H~~Fw~~~~~-~l~k~~~~fek~ek----k~Vl~v~F~-engd-viTgDS~G~i~Iw~~~~~~~~k~ 282 (626)
T KOG2106|consen 210 PTDPNLIITCGKGHLYFWTLRGG-SLVKRQGIFEKREK----KFVLCVTFL-ENGD-VITGDSGGNILIWSKGTNRISKQ 282 (626)
T ss_pred cCCCcEEEEeCCceEEEEEccCC-ceEEEeeccccccc----eEEEEEEEc-CCCC-EEeecCCceEEEEeCCCceEEeE
Confidence 789999999998 9999999886 44455566766664 679999998 6666 67999999999999988887777
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCC-----------Ceeeeec------------------------
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKE-----------HSTIIYE------------------------ 124 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~------------------------ 124 (253)
...|.+.|.+++.. +|.+| +|+.|..|..||-.-.+ .++.+.+
T Consensus 283 ~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~ 361 (626)
T KOG2106|consen 283 VHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFT 361 (626)
T ss_pred eeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCce
Confidence 77999999999999 66554 59999999999832211 0011110
Q ss_pred --cCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE--------------------------------------CCCCC
Q 035558 125 --SSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD--------------------------------------IRFPT 164 (253)
Q Consensus 125 --~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d--------------------------------------~~~~~ 164 (253)
..+|......++.+| +.+++++++.|+. +++|+ .++..
T Consensus 362 ~~v~gh~delwgla~hp-s~~q~~T~gqdk~-v~lW~~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~ 439 (626)
T KOG2106|consen 362 LTVQGHGDELWGLATHP-SKNQLLTCGQDKH-VRLWNDHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQD 439 (626)
T ss_pred EEEEecccceeeEEcCC-ChhheeeccCcce-EEEccCCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccce
Confidence 011233455566666 6666667777766 77776 22211
Q ss_pred CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEc
Q 035558 165 LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAF 244 (253)
Q Consensus 165 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 244 (253)
+..+.....+++.++|+|+| .+||.|+.|+.|++|.+....... .....-+..+|+.+.|++|++++.+.+.
T Consensus 440 --lv~~~~d~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g~~y-----~r~~k~~gs~ithLDwS~Ds~~~~~~S~ 511 (626)
T KOG2106|consen 440 --LVTIHTDNEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSANGRKY-----SRVGKCSGSPITHLDWSSDSQFLVSNSG 511 (626)
T ss_pred --eEEEEecCCceEEEEEcCCC-CEEEEecCCCeEEEEEECCCCcEE-----EEeeeecCceeEEeeecCCCceEEeccC
Confidence 12222236789999999999 599999999999999998766443 1233345699999999999999999999
Q ss_pred CCcEEEEE
Q 035558 245 STKLQILR 252 (253)
Q Consensus 245 ~~~i~vw~ 252 (253)
|-.|-.|.
T Consensus 512 d~eiLyW~ 519 (626)
T KOG2106|consen 512 DYEILYWK 519 (626)
T ss_pred ceEEEEEc
Confidence 99998884
No 137
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=2e-24 Score=165.53 Aligned_cols=228 Identities=16% Similarity=0.208 Sum_probs=183.6
Q ss_pred CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee--eeee
Q 035558 5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV--DTQL 81 (253)
Q Consensus 5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~ 81 (253)
.+.+.||+. .|+|||+... ....++..+..-... ..|.++... ++++.|++|+.-.++.|||+..... ...+
T Consensus 431 trhVyTgGkgcVKVWdis~p-g~k~PvsqLdcl~rd---nyiRSckL~-pdgrtLivGGeastlsiWDLAapTprikael 505 (705)
T KOG0639|consen 431 TRHVYTGGKGCVKVWDISQP-GNKSPVSQLDCLNRD---NYIRSCKLL-PDGRTLIVGGEASTLSIWDLAAPTPRIKAEL 505 (705)
T ss_pred cceeEecCCCeEEEeeccCC-CCCCccccccccCcc---cceeeeEec-CCCceEEeccccceeeeeeccCCCcchhhhc
Confidence 356778887 9999999875 223344444443222 568899999 8999999999999999999976543 3334
Q ss_pred ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558 82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160 (253)
Q Consensus 82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~ 160 (253)
....-..++++.+ |.++..+++.||.|.|||+++.. .+....+|...+.|+..++ +|..|-+|+-|+. |+.||+
T Consensus 506 tssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~---~VrqfqGhtDGascIdis~-dGtklWTGGlDnt-vRcWDl 580 (705)
T KOG0639|consen 506 TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT---LVRQFQGHTDGASCIDISK-DGTKLWTGGLDNT-VRCWDL 580 (705)
T ss_pred CCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce---eeecccCCCCCceeEEecC-CCceeecCCCccc-eeehhh
Confidence 3334567788889 99999999999999999999886 4556678888999999999 9999999999999 999999
Q ss_pred CCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE
Q 035558 161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 240 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 240 (253)
|...++ ... .....|.++.++|+++ +|+.|-+.+.+.|-.....++ ..+..|.+-|.++.|.+.|+.++
T Consensus 581 regrql-qqh-dF~SQIfSLg~cP~~d-WlavGMens~vevlh~skp~k--------yqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 581 REGRQL-QQH-DFSSQIFSLGYCPTGD-WLAVGMENSNVEVLHTSKPEK--------YQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred hhhhhh-hhh-hhhhhheecccCCCcc-ceeeecccCcEEEEecCCccc--------eeecccccEEEEEEecccCceee
Confidence 987652 221 1246799999999995 999999999998887766543 46778999999999999999999
Q ss_pred EEEcCCcEEEEEC
Q 035558 241 AIAFSTKLQILRV 253 (253)
Q Consensus 241 ~~~~~~~i~vw~l 253 (253)
+.+.|+-+..|+.
T Consensus 650 StGkDnlLnawrt 662 (705)
T KOG0639|consen 650 STGKDNLLNAWRT 662 (705)
T ss_pred ecCchhhhhhccC
Confidence 9999999998874
No 138
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.8e-23 Score=158.43 Aligned_cols=235 Identities=11% Similarity=0.134 Sum_probs=182.8
Q ss_pred CCCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558 2 CQKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT 79 (253)
Q Consensus 2 p~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 79 (253)
|.+...+++++. .++.||+.+. ....+..+.+++. ..+.....+ +++++|+..+..|.|.+....+++.+.
T Consensus 267 p~G~~~i~~s~rrky~ysyDle~a--k~~k~~~~~g~e~----~~~e~FeVS-hd~~fia~~G~~G~I~lLhakT~eli~ 339 (514)
T KOG2055|consen 267 PNGHSVIFTSGRRKYLYSYDLETA--KVTKLKPPYGVEE----KSMERFEVS-HDSNFIAIAGNNGHIHLLHAKTKELIT 339 (514)
T ss_pred CCCceEEEecccceEEEEeecccc--ccccccCCCCccc----chhheeEec-CCCCeEEEcccCceEEeehhhhhhhhh
Confidence 444447777775 9999999874 3334444555552 467778888 889999999999999999999999999
Q ss_pred eeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558 80 QLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL 158 (253)
Q Consensus 80 ~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~ 158 (253)
.++ -.+.|.+++|+ ++..|++++.+|.|.+||+++..+.......... .-++++.++ ++.++|+|+..|- |.||
T Consensus 340 s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v--~gts~~~S~-ng~ylA~GS~~Gi-VNIY 414 (514)
T KOG2055|consen 340 SFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV--HGTSLCISL-NGSYLATGSDSGI-VNIY 414 (514)
T ss_pred eee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc--ceeeeeecC-CCceEEeccCcce-EEEe
Confidence 888 57899999999 9999999999999999999999755444332221 445677778 8899999999998 9999
Q ss_pred ECCC-----CCCCeeeecccccceeEEEEecCCCCeEEEec--CCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEE
Q 035558 159 DIRF-----PTLPVVELQRHQASVNAIAWAPHSSCHICTAG--DDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQ 231 (253)
Q Consensus 159 d~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 231 (253)
|..+ ..+|++.+..-...|++|+|+|+. ++|+.+| .+..+++-.+.+...-. -.| .....-+.|++++
T Consensus 415 d~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS~TVFs---NfP-~~n~~vg~vtc~a 489 (514)
T KOG2055|consen 415 DGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA-QILAIASRVKKNALRLVHVPSCTVFS---NFP-TSNTKVGHVTCMA 489 (514)
T ss_pred ccchhhccCCCCchhhhhhhheeeeeeeeCcch-hhhhhhhhccccceEEEeccceeeec---cCC-CCCCcccceEEEE
Confidence 9654 235677777778899999999999 6888877 57899999888755221 001 1123456799999
Q ss_pred EcCCCCceEEEEcCCcEEEEEC
Q 035558 232 WSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 232 ~~~~~~~~~~~~~~~~i~vw~l 253 (253)
|+|.+.+++.+...+++.+|+|
T Consensus 490 FSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 490 FSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred ecCCCceEEeecCCCceeeEee
Confidence 9999988888889999999986
No 139
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.2e-22 Score=141.45 Aligned_cols=200 Identities=16% Similarity=0.208 Sum_probs=150.0
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEecc------Cce---------eeeeeecccccEEEEEec-CCCeEEEEeCCC
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE------REA---------VDTQLIAHDKEVYDIAWG-GVGVFASVSADG 106 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~------~~~---------~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg 106 (253)
..|.+++|+ |.+.+.+.|+...+.+|.... .+. ..+.-+-|++.|.|.+|+ +++++++|+.|.
T Consensus 33 qairav~fh-p~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 33 QAIRAVAFH-PAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hheeeEEec-CCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 589999999 899999999999999886432 211 111223588999999999 999999999999
Q ss_pred cEEEEEcCCCCCee--eeeccCCCCCCeeEEEeeC---------------------------------------------
Q 035558 107 SVRVFDLRDKEHST--IIYESSEPDTPLVRLGWNK--------------------------------------------- 139 (253)
Q Consensus 107 ~i~i~d~~~~~~~~--~~~~~~~~~~~i~~~~~~~--------------------------------------------- 139 (253)
+|++..++...+.. .-.+..-|.+.|..++|-.
T Consensus 112 ~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalys 191 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYS 191 (350)
T ss_pred eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEE
Confidence 99998765433211 0111112222333333211
Q ss_pred CCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc-------cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCC
Q 035558 140 QDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR-------HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVE 212 (253)
Q Consensus 140 ~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 212 (253)
.++-.+++|+.|.. |++||++-.. ++..+.. ....|.+++..|.| ++|++|-.|....+||++.+....
T Consensus 192 wn~~m~~sgsqdkt-irfwdlrv~~-~v~~l~~~~~~~glessavaav~vdpsg-rll~sg~~dssc~lydirg~r~iq- 267 (350)
T KOG0641|consen 192 WNGAMFASGSQDKT-IRFWDLRVNS-CVNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRMIQ- 267 (350)
T ss_pred ecCcEEEccCCCce-EEEEeeeccc-eeeeccCcccCCCcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCceee-
Confidence 15667788888888 9999999755 3444432 23579999999999 799999999999999999887554
Q ss_pred CCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 213 GGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
.+..|...|.++.|+|...++++++.|..|++-+|
T Consensus 268 ------~f~phsadir~vrfsp~a~yllt~syd~~ikltdl 302 (350)
T KOG0641|consen 268 ------RFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDL 302 (350)
T ss_pred ------eeCCCccceeEEEeCCCceEEEEecccceEEEeec
Confidence 78899999999999999999999999999998764
No 140
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.3e-23 Score=167.01 Aligned_cols=210 Identities=19% Similarity=0.300 Sum_probs=168.0
Q ss_pred ceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec
Q 035558 6 DLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA 83 (253)
Q Consensus 6 ~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 83 (253)
..|++++ + +|.+|.+..+ +.-..+..-. -++++++|+ .+|+++|.|+.|-.|++.+..+......+++
T Consensus 67 ~~f~~~s~~~tv~~y~fps~----~~~~iL~Rft-----lp~r~~~v~-g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg 136 (933)
T KOG1274|consen 67 NHFLTGSEQNTVLRYKFPSG----EEDTILARFT-----LPIRDLAVS-GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG 136 (933)
T ss_pred cceEEeeccceEEEeeCCCC----Cccceeeeee-----ccceEEEEe-cCCcEEEeecCceeEEEEeccccchheeecc
Confidence 3566666 4 9999999886 4444444444 789999999 9999999999999999999999999999999
Q ss_pred ccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCC-----CCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558 84 HDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEP-----DTPLVRLGWNKQDPRYMATIIMDSAKVVV 157 (253)
Q Consensus 84 ~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~l~~~~~~~~~i~~ 157 (253)
|.++|.++.|+ .+++||+.+-||.|++||+.++.....+...... ...+..++|+| ++..+++.+.++. |++
T Consensus 137 h~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~-Vkv 214 (933)
T KOG1274|consen 137 HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNT-VKV 214 (933)
T ss_pred cCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCe-EEE
Confidence 99999999999 9999999999999999999988654433322111 33677899999 7667777777888 999
Q ss_pred EECCCCCCCeeeec--ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC
Q 035558 158 LDIRFPTLPVVELQ--RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS 235 (253)
Q Consensus 158 ~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 235 (253)
|+...... ...+. .+...+..++|+|+| +|||+++.||.|.|||..+.. .......|++++|.|+
T Consensus 215 y~r~~we~-~f~Lr~~~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t~~-----------~~~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 215 YSRKGWEL-QFKLRDKLSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDTHE-----------RHEFKRAVCCEAWKPN 281 (933)
T ss_pred EccCCcee-heeecccccccceEEEEEcCCC-cEEeeeccCCcEEEEecccch-----------hccccceeEEEecCCC
Confidence 99887653 44443 344459999999999 799999999999999999833 1334678999999999
Q ss_pred CCceE
Q 035558 236 QPDWV 240 (253)
Q Consensus 236 ~~~~~ 240 (253)
...+-
T Consensus 282 ~n~it 286 (933)
T KOG1274|consen 282 ANAIT 286 (933)
T ss_pred CCeeE
Confidence 87443
No 141
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=5.1e-23 Score=161.63 Aligned_cols=237 Identities=15% Similarity=0.157 Sum_probs=169.1
Q ss_pred CCCCceEEeecC--cEEEEEccCCcccc--ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee
Q 035558 2 CQKPDLLATSSD--FLRVWRISDEDRRV--ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV 77 (253)
Q Consensus 2 p~~~~~l~~~~~--~v~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 77 (253)
|...++|+.+.+ .|.++|........ ..+.....|. ..|..+.|- +....|++++.|.++++||+++.++
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~-----nAifDl~wa-pge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHK-----NAIFDLKWA-PGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhcchhhhhhccccccc-----ceeEeeccC-CCceeEEEccCCceeeeeeecccee
Confidence 345678888885 99999987641111 1234566787 899999999 5788899999999999999999987
Q ss_pred eee--eecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCC--------------------eee----eeccCCCC
Q 035558 78 DTQ--LIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEH--------------------STI----IYESSEPD 129 (253)
Q Consensus 78 ~~~--~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~--------------------~~~----~~~~~~~~ 129 (253)
... +.+|...|.+++|. +...|++|+.||.|.|||++-... .++ +.....+.
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s 214 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS 214 (720)
T ss_pred ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence 776 78999999999999 889999999999999999975430 000 01111122
Q ss_pred C----CeeEEEeeCCCCCEEEEEEe-CCCeEEEEECCCCCC-----Ce--eeeccc---ccceeEEEEecCCCCeEEEec
Q 035558 130 T----PLVRLGWNKQDPRYMATIIM-DSAKVVVLDIRFPTL-----PV--VELQRH---QASVNAIAWAPHSSCHICTAG 194 (253)
Q Consensus 130 ~----~i~~~~~~~~~~~~l~~~~~-~~~~i~~~d~~~~~~-----~~--~~~~~~---~~~i~~~~~~~~~~~~l~~~~ 194 (253)
. .|+.+.| . |...||+++. |+. |+|||+++... +. ..+..| ...+.++.....|. +|++.+
T Consensus 215 ~ti~ssvTvv~f-k-De~tlaSaga~D~~-iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt-~L~AsC 290 (720)
T KOG0321|consen 215 NTIFSSVTVVLF-K-DESTLASAGAADST-IKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT-YLFASC 290 (720)
T ss_pred CceeeeeEEEEE-e-ccceeeeccCCCcc-eEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC-eEEEEe
Confidence 2 3444545 4 7888998888 777 99999998652 12 222233 33577788888885 666666
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCeeeccCC--CceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 195 DDSQALIWDLSSMGQPVEGGLDPILAYTAG--AEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 195 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
.|++|++|++......- ...+.++. ..-..-..+|++.++++++.|....+|.+
T Consensus 291 tD~sIy~ynm~s~s~sP-----~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~v 346 (720)
T KOG0321|consen 291 TDNSIYFYNMRSLSISP-----VAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVV 346 (720)
T ss_pred cCCcEEEEeccccCcCc-----hhhccCcccceeeeeeecCCCCceEeccCCCcceeeeee
Confidence 69999999999876322 11222221 12223347899999999999999999975
No 142
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=4.8e-23 Score=149.99 Aligned_cols=227 Identities=15% Similarity=0.249 Sum_probs=172.1
Q ss_pred CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEec-cCcee--
Q 035558 3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDI-EREAV-- 77 (253)
Q Consensus 3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~-~~~~~-- 77 (253)
|+..++++++. -|++||.-++ +....+.+....+.-..-.+++|+ ++|..|++|. ...|+++|+ +.|+-
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG----~lraSy~~ydh~de~taAhsL~Fs-~DGeqlfaGy-krcirvFdt~RpGr~c~ 194 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTG----KLRASYRAYDHQDEYTAAHSLQFS-PDGEQLFAGY-KRCIRVFDTSRPGRDCP 194 (406)
T ss_pred CccceeeeccccCceeeeecccc----ccccchhhhhhHHhhhhheeEEec-CCCCeEeecc-cceEEEeeccCCCCCCc
Confidence 45567777774 9999999987 666666654311111234589999 9999999875 579999999 55541
Q ss_pred eeee-----ecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558 78 DTQL-----IAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM 150 (253)
Q Consensus 78 ~~~~-----~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 150 (253)
.... .+..+-|.+++|+ +...++.++....+-|+.-....+ +....+|.+.|+.+.|.+ +++.|.+|..
T Consensus 195 vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p---l~llggh~gGvThL~~~e-dGn~lfsGaR 270 (406)
T KOG2919|consen 195 VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP---LQLLGGHGGGVTHLQWCE-DGNKLFSGAR 270 (406)
T ss_pred chhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc---eeeecccCCCeeeEEecc-CcCeeccccc
Confidence 1111 2346788999999 777999999999999988777764 333447888999999999 9999999988
Q ss_pred CCCeEEEEECCCCCCCeeeeccccc-ceeEEE--EecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCce
Q 035558 151 DSAKVVVLDIRFPTLPVVELQRHQA-SVNAIA--WAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEI 227 (253)
Q Consensus 151 ~~~~i~~~d~~~~~~~~~~~~~~~~-~i~~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v 227 (253)
..-.|..||+|....++..+..|.. .-..+. ..|.+ ++|++|+.||.|++||+.....+. .....+...+
T Consensus 271 k~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk~~gn~~------sv~~~~sd~v 343 (406)
T KOG2919|consen 271 KDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLKDLGNEV------SVTGNYSDTV 343 (406)
T ss_pred CCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCC-ceeeccCCCccEEEEecCCCCCcc------cccccccccc
Confidence 6666999999998888888888876 333444 45788 699999999999999999855422 4666789999
Q ss_pred eEEEEcCCCCceEEEEcCCc
Q 035558 228 EQLQWSSSQPDWVAIAFSTK 247 (253)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~ 247 (253)
+.++++|.-+ ++|.++...
T Consensus 344 NgvslnP~mp-ilatssGqr 362 (406)
T KOG2919|consen 344 NGVSLNPIMP-ILATSSGQR 362 (406)
T ss_pred cceecCcccc-eeeeccCce
Confidence 9999999976 555555443
No 143
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.9e-23 Score=151.96 Aligned_cols=235 Identities=14% Similarity=0.218 Sum_probs=177.1
Q ss_pred eEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCC-CCCEEEEEeCCCeEEEEeccCceeeeee--e
Q 035558 7 LLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEA-EPRRIGTSSIDTTCTIWDIEREAVDTQL--I 82 (253)
Q Consensus 7 ~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~ 82 (253)
++++.+. .|++||..++ +.+..++++. ..++.+.|... .+..+.+++.||+|++||++.......+ .
T Consensus 43 vav~lSngsv~lyd~~tg----~~l~~fk~~~-----~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~ 113 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGTG----QLLEEFKGPP-----ATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT 113 (376)
T ss_pred EEEEecCCeEEEEeccch----hhhheecCCC-----CcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc
Confidence 4444556 9999999998 8899999999 78889999722 5778999999999999999877644433 3
Q ss_pred ccc-ccEEEEEec-CCCeEEEEeC----CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558 83 AHD-KEVYDIAWG-GVGVFASVSA----DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV 156 (253)
Q Consensus 83 ~~~-~~v~~~~~~-~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~ 156 (253)
.+. .+..+++-+ ..+.+++|.. +-.|.+||+|..+..... -...|...|+++.|+|.+.++|++|+.||- |.
T Consensus 114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~-~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL-vn 191 (376)
T KOG1188|consen 114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ-LNESHNDDVTQLRFHPSDPNLLLSGSVDGL-VN 191 (376)
T ss_pred CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh-hhhhccCcceeEEecCCCCCeEEeecccce-EE
Confidence 444 456677776 7778887753 678999999998752212 223566799999999999999999999998 99
Q ss_pred EEECCCCCC--CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCC----------------------
Q 035558 157 VLDIRFPTL--PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVE---------------------- 212 (253)
Q Consensus 157 ~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------------------- 212 (253)
+||+....+ ++.....|...|.++.|..++-+.+.+-+...+..+|+++.+.....
T Consensus 192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~ 271 (376)
T KOG1188|consen 192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN 271 (376)
T ss_pred eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee
Confidence 999986542 24444457778999999988866788889999999999987652110
Q ss_pred --------------------------------CCCCCeeecc-CCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 213 --------------------------------GGLDPILAYT-AGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 213 --------------------------------~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
....+..+.+ |..-|+++.|...+..++++|.|+.+.+|+
T Consensus 272 ~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 272 EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 0011122222 455677777877777788999999999997
No 144
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.91 E-value=8e-23 Score=146.81 Aligned_cols=237 Identities=16% Similarity=0.258 Sum_probs=177.8
Q ss_pred CCCCceEEeec--C----cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCC----CCEEEEEeCCCeEEEEe
Q 035558 2 CQKPDLLATSS--D----FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAE----PRRIGTSSIDTTCTIWD 71 (253)
Q Consensus 2 p~~~~~l~~~~--~----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~dg~i~vwd 71 (253)
|..+.+||.|+ + .|.|-.++....+...... -.|. .+++.+.|.|.. .++||+.+ ..+|+|.
T Consensus 56 ~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-fd~~-----YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWr 127 (364)
T KOG0290|consen 56 PDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-FDHP-----YPVTKLMWIPDSKGVYPDLLATSS--DFLRLWR 127 (364)
T ss_pred CCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-CCCC-----CCccceEecCCccccCcchhhccc--CeEEEEe
Confidence 44567788886 2 7888777653222222222 2344 899999999533 35666654 4799999
Q ss_pred ccCce----eeeee-----ecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC
Q 035558 72 IEREA----VDTQL-----IAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ 140 (253)
Q Consensus 72 ~~~~~----~~~~~-----~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 140 (253)
+...+ +...+ ..+..++++..|+ +.+++.+++-|-+..+||++++....+....-.|...|..++|...
T Consensus 128 i~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~ 207 (364)
T KOG0290|consen 128 IGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKG 207 (364)
T ss_pred ccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccC
Confidence 87422 11111 2456799999999 9999999999999999999997432233344477789999999986
Q ss_pred CCCEEEEEEeCCCeEEEEECCCCCCCeeeec--ccccceeEEEEecCCCCeEEEecCC-CcEEEEeccCCCCCCCCCCCC
Q 035558 141 DPRYMATIIMDSAKVVVLDIRFPTLPVVELQ--RHQASVNAIAWAPHSSCHICTAGDD-SQALIWDLSSMGQPVEGGLDP 217 (253)
Q Consensus 141 ~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~ 217 (253)
..+.||+.+.||. ++++|+|........+. ....+...++|+++.++++++-..| ..|.|.|++....+.
T Consensus 208 s~~~FASvgaDGS-vRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpv------ 280 (364)
T KOG0290|consen 208 SRDVFASVGADGS-VRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPV------ 280 (364)
T ss_pred ccceEEEecCCCc-EEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcce------
Confidence 6789999999999 99999998663222222 2256789999999998899887654 689999999998776
Q ss_pred eeeccCCCceeEEEEcCCCC-ceEEEEcCCcEEEEEC
Q 035558 218 ILAYTAGAEIEQLQWSSSQP-DWVAIAFSTKLQILRV 253 (253)
Q Consensus 218 ~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~vw~l 253 (253)
..+.+|.+.|++++|.|..+ .++++|.|..+.+|+|
T Consensus 281 a~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl 317 (364)
T KOG0290|consen 281 ARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDL 317 (364)
T ss_pred ehhhcCcccccceEecCCCCceeeecCCcceEEEEec
Confidence 78889999999999999765 4668889999999986
No 145
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=4.7e-23 Score=150.86 Aligned_cols=193 Identities=17% Similarity=0.260 Sum_probs=156.1
Q ss_pred CEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec---CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCe
Q 035558 56 RRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG---GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPL 132 (253)
Q Consensus 56 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i 132 (253)
+.+|++..+|.|++||..+++.+..+++++..+..+.|. .+..+.+|+.||+|++||+|.......+........+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 568888899999999999999999999999999999998 46789999999999999999887655554433444477
Q ss_pred eEEEeeCCCCCEEEEEEe---CCCeEEEEECCCCCCCeeee-cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558 133 VRLGWNKQDPRYMATIIM---DSAKVVVLDIRFPTLPVVEL-QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~---~~~~i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
.+++.+- ..+.+++|.. ..-.|.+||.|+.++++..+ ..|...|++++|+|..+.+|++||.||-|.+||+....
T Consensus 121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 7777765 6677777653 12249999999988755544 56999999999999999999999999999999998764
Q ss_pred CCCCCCCCCeeeccCCCceeEEEEcCCC-CceEEEEcCCcEEEEEC
Q 035558 209 QPVEGGLDPILAYTAGAEIEQLQWSSSQ-PDWVAIAFSTKLQILRV 253 (253)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~i~vw~l 253 (253)
.. ........|...|..+.|...+ +.+.+.+......+|++
T Consensus 200 Ee----DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~el 241 (376)
T KOG1188|consen 200 EE----DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYEL 241 (376)
T ss_pred ch----hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence 22 1224556788899999999877 34888999999999985
No 146
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=3.8e-22 Score=144.24 Aligned_cols=190 Identities=15% Similarity=0.252 Sum_probs=156.5
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeee
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTII 122 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 122 (253)
..|.++.|+ +..+.|++++.||++++||+....+...++ |..++.+.+|.+...+++|+.||.|+.+|+.++.....
T Consensus 14 d~IS~v~f~-~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~i- 90 (323)
T KOG1036|consen 14 DGISSVKFS-PSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQI- 90 (323)
T ss_pred hceeeEEEc-CcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCceEEEeccCceEEEEEecCCcceee-
Confidence 789999999 777777788899999999999887666666 89999999999888999999999999999999874322
Q ss_pred eccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEE
Q 035558 123 YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIW 202 (253)
Q Consensus 123 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iw 202 (253)
..|..++.++.+.+ ....+++|+.|+. |++||.|... ....+. ....|.++... + ..|+.|+.|..+.+|
T Consensus 91 ---gth~~~i~ci~~~~-~~~~vIsgsWD~~-ik~wD~R~~~-~~~~~d-~~kkVy~~~v~--g-~~LvVg~~~r~v~iy 160 (323)
T KOG1036|consen 91 ---GTHDEGIRCIEYSY-EVGCVISGSWDKT-IKFWDPRNKV-VVGTFD-QGKKVYCMDVS--G-NRLVVGTSDRKVLIY 160 (323)
T ss_pred ---ccCCCceEEEEeec-cCCeEEEcccCcc-EEEEeccccc-cccccc-cCceEEEEecc--C-CEEEEeecCceEEEE
Confidence 36677999999998 8889999999999 9999999733 233333 34478888776 4 479999999999999
Q ss_pred eccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEE
Q 035558 203 DLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQI 250 (253)
Q Consensus 203 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~v 250 (253)
|+++...+. ......-...+.+|++-|++..+++++-||++.+
T Consensus 161 DLRn~~~~~-----q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVav 203 (323)
T KOG1036|consen 161 DLRNLDEPF-----QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAV 203 (323)
T ss_pred Ecccccchh-----hhccccceeEEEEEEEecCCCceEEEeecceEEE
Confidence 999988665 1122344678999999998888999999998865
No 147
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=6.4e-24 Score=176.34 Aligned_cols=224 Identities=18% Similarity=0.314 Sum_probs=173.9
Q ss_pred cEEEEEccCCccc--cceeeeecCCCCccccCCeeEEEecCCCCC----EEEEEeCCCeEEEEeccCc------eeeeee
Q 035558 14 FLRVWRISDEDRR--VELKSLLNGNKNSEYCGPLTSFDWNEAEPR----RIGTSSIDTTCTIWDIERE------AVDTQL 81 (253)
Q Consensus 14 ~v~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~l~~~~~dg~i~vwd~~~~------~~~~~~ 81 (253)
++.||.++..+.. ++.+..+... ...+.++|. +.+. .|+.|..||.|-+||...- ..+...
T Consensus 40 slEifeld~~~~~~dlk~~~s~~s~------~rF~kL~W~-~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~ 112 (1049)
T KOG0307|consen 40 SLEIFELDFSDESSDLKPVGSLQSS------NRFNKLAWG-SYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATK 112 (1049)
T ss_pred ccceeeecccCcccccccccccccc------ccceeeeec-ccCCCccceeeccccCCceEEecchhhccCcchHHHhhh
Confidence 5666666543122 2344444433 467899998 5544 4899999999999998652 255566
Q ss_pred ecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 82 IAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 82 ~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
..|++.|..+.|+ .+++||+|+.||.|.|||+...+...... .......|.+++|+......|++++.++. +.|||
T Consensus 113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~-~~iWD 190 (1049)
T KOG0307|consen 113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGR-AVIWD 190 (1049)
T ss_pred cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhHHhhccCCCCC-ceecc
Confidence 7899999999999 77799999999999999999865332221 22345589999999877788999998888 99999
Q ss_pred CCCCCCCeeeeccccc--ceeEEEEecCCCCeEEEecCC---CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcC
Q 035558 160 IRFPTLPVVELQRHQA--SVNAIAWAPHSSCHICTAGDD---SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS 234 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 234 (253)
+|..+ ++..+..+.. .+..++|+|+....+++++.| -.|.+||++....+. ..+.+|...|.++.|++
T Consensus 191 lr~~~-pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~------k~~~~H~~GilslsWc~ 263 (1049)
T KOG0307|consen 191 LRKKK-PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL------KILEGHQRGILSLSWCP 263 (1049)
T ss_pred ccCCC-cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch------hhhcccccceeeeccCC
Confidence 99864 4665555443 578999999998888888865 479999999988776 56679999999999999
Q ss_pred CC-CceEEEEcCCcEEEEEC
Q 035558 235 SQ-PDWVAIAFSTKLQILRV 253 (253)
Q Consensus 235 ~~-~~~~~~~~~~~i~vw~l 253 (253)
.+ .++++++.|+++.+|+.
T Consensus 264 ~D~~lllSsgkD~~ii~wN~ 283 (1049)
T KOG0307|consen 264 QDPRLLLSSGKDNRIICWNP 283 (1049)
T ss_pred CCchhhhcccCCCCeeEecC
Confidence 88 56779999999999973
No 148
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=1.9e-21 Score=149.97 Aligned_cols=228 Identities=8% Similarity=0.033 Sum_probs=156.6
Q ss_pred ceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEE-EEEeCCCeEEEEeccCceeeeeee
Q 035558 6 DLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRI-GTSSIDTTCTIWDIEREAVDTQLI 82 (253)
Q Consensus 6 ~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~ 82 (253)
.++++++ + .|++||+.++ +....+..+. .+.+++|+ ++++.+ ++++.++.|++||..+++....+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~----~~~~~~~~~~------~~~~l~~~-~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 70 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL----EVTRTFPVGQ------RPRGITLS-KDGKLLYVCASDSDTIQVIDLATGEVIGTLP 70 (300)
T ss_pred cEEEEecCCCEEEEEECCCC----ceEEEEECCC------CCCceEEC-CCCCEEEEEECCCCeEEEEECCCCcEEEecc
Confidence 4677766 4 9999999886 6677777654 46789999 777765 667788999999999888777666
Q ss_pred cccccEEEEEec-CCCeEEE-EeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558 83 AHDKEVYDIAWG-GVGVFAS-VSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160 (253)
Q Consensus 83 ~~~~~v~~~~~~-~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~ 160 (253)
.+.. +..++|+ +++.+++ ++.++.+++||+++.+....+. . ...+..++|+| ++.+++++..++..+.+||.
T Consensus 71 ~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~---~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~ 144 (300)
T TIGR03866 71 SGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP---V-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDT 144 (300)
T ss_pred CCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee---C-CCCcceEEECC-CCCEEEEEecCCCeEEEEeC
Confidence 5443 4678898 7776654 4568999999998865333221 1 12467899999 89999988877654778898
Q ss_pred CCCCCCeeeecccccceeEEEEecCCCCeE-EEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558 161 RFPTLPVVELQRHQASVNAIAWAPHSSCHI-CTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW 239 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 239 (253)
++... ..... ....+..++|+|++ ++| +++..++.|++||+++++.....................++|+|+++.+
T Consensus 145 ~~~~~-~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~ 221 (300)
T TIGR03866 145 KTYEI-VDNVL-VDQRPRFAEFTADG-KELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTA 221 (300)
T ss_pred CCCeE-EEEEE-cCCCccEEEECCCC-CEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEE
Confidence 76542 33222 23345789999999 466 4555799999999998753220000000000011234578999999875
Q ss_pred E-EEEcCCcEEEEEC
Q 035558 240 V-AIAFSTKLQILRV 253 (253)
Q Consensus 240 ~-~~~~~~~i~vw~l 253 (253)
+ +.+.++.+.+|++
T Consensus 222 ~~~~~~~~~i~v~d~ 236 (300)
T TIGR03866 222 FVALGPANRVAVVDA 236 (300)
T ss_pred EEEcCCCCeEEEEEC
Confidence 4 4556778999974
No 149
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=3.3e-21 Score=148.69 Aligned_cols=225 Identities=13% Similarity=0.126 Sum_probs=155.1
Q ss_pred CCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEE-EeCCCeEEEEeccCceee
Q 035558 2 CQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGT-SSIDTTCTIWDIEREAVD 78 (253)
Q Consensus 2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~ 78 (253)
|+...++++++ + .|++||..++ +....+..+. .+..++|+ ++++.+++ +..++.|++||+++.+.+
T Consensus 40 ~dg~~l~~~~~~~~~v~~~d~~~~----~~~~~~~~~~------~~~~~~~~-~~g~~l~~~~~~~~~l~~~d~~~~~~~ 108 (300)
T TIGR03866 40 KDGKLLYVCASDSDTIQVIDLATG----EVIGTLPSGP------DPELFALH-PNGKILYIANEDDNLVTVIDIETRKVL 108 (300)
T ss_pred CCCCEEEEEECCCCeEEEEECCCC----cEEEeccCCC------CccEEEEC-CCCCEEEEEcCCCCeEEEEECCCCeEE
Confidence 44444445655 4 9999999886 5555555543 34678899 77776654 456899999999988777
Q ss_pred eeeecccccEEEEEec-CCCeEEEEeCCC-cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE-eCCCeE
Q 035558 79 TQLIAHDKEVYDIAWG-GVGVFASVSADG-SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII-MDSAKV 155 (253)
Q Consensus 79 ~~~~~~~~~v~~~~~~-~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~~~~~i 155 (253)
..+.. ...+.+++|+ ++..++++..++ .+..||.++.+....... ......++|+| ++..+++++ .++. |
T Consensus 109 ~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~s~-dg~~l~~~~~~~~~-v 181 (300)
T TIGR03866 109 AEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV----DQRPRFAEFTA-DGKELWVSSEIGGT-V 181 (300)
T ss_pred eEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc----CCCccEEEECC-CCCEEEEEcCCCCE-E
Confidence 66652 3456889999 999999888765 467789887653332211 12456799999 787776554 4666 9
Q ss_pred EEEECCCCCCCeeeecccc-------cceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCcee
Q 035558 156 VVLDIRFPTLPVVELQRHQ-------ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIE 228 (253)
Q Consensus 156 ~~~d~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 228 (253)
.+||+++.+. +..+..+. .....++|+|++...+++.+.++.+.+||+++.+.. ....+...+.
T Consensus 182 ~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~--------~~~~~~~~~~ 252 (300)
T TIGR03866 182 SVIDVATRKV-IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL--------DYLLVGQRVW 252 (300)
T ss_pred EEEEcCccee-eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE--------EEEEeCCCcc
Confidence 9999987653 33332211 123568899999433444556778999999875532 2223456789
Q ss_pred EEEEcCCCCceEEE-EcCCcEEEEEC
Q 035558 229 QLQWSSSQPDWVAI-AFSTKLQILRV 253 (253)
Q Consensus 229 ~~~~~~~~~~~~~~-~~~~~i~vw~l 253 (253)
+++|+|++++++++ +.++.|++|++
T Consensus 253 ~~~~~~~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 253 QLAFTPDEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred eEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 99999999987765 46899999985
No 150
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.91 E-value=3.3e-22 Score=149.12 Aligned_cols=208 Identities=18% Similarity=0.297 Sum_probs=167.2
Q ss_pred ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-------eeeeeeecccccEEEEEec--CCCe
Q 035558 28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-------AVDTQLIAHDKEVYDIAWG--GVGV 98 (253)
Q Consensus 28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~--~~~~ 98 (253)
+..-.+.+|+ ++|..++|+|.+.+.||+|+.|.+|.||.+-.+ +.+..+.+|...|--++|+ -.+.
T Consensus 72 ~~~P~v~GHt-----~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NV 146 (472)
T KOG0303|consen 72 ASYPLVCGHT-----APVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNV 146 (472)
T ss_pred CCCCCccCcc-----ccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhh
Confidence 3445677888 999999999999999999999999999998654 3566788999999999999 8889
Q ss_pred EEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccccc-ce
Q 035558 99 FASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQA-SV 177 (253)
Q Consensus 99 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~i 177 (253)
|++++.|.+|.+||+.+++....+ .|...|+++.|+. +|.++++.+.|.. |+|||.+++.. +..-.+|.+ .-
T Consensus 147 Llsag~Dn~v~iWnv~tgeali~l----~hpd~i~S~sfn~-dGs~l~TtckDKk-vRv~dpr~~~~-v~e~~~heG~k~ 219 (472)
T KOG0303|consen 147 LLSAGSDNTVSIWNVGTGEALITL----DHPDMVYSMSFNR-DGSLLCTTCKDKK-VRVIDPRRGTV-VSEGVAHEGAKP 219 (472)
T ss_pred HhhccCCceEEEEeccCCceeeec----CCCCeEEEEEecc-CCceeeeecccce-eEEEcCCCCcE-eeecccccCCCc
Confidence 999999999999999999843332 2777999999999 9999999999999 99999999764 666677776 34
Q ss_pred eEEEEecCCCCeEEEec---CCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE-EEEcCCcEEEEEC
Q 035558 178 NAIAWAPHSSCHICTAG---DDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV-AIAFSTKLQILRV 253 (253)
Q Consensus 178 ~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~vw~l 253 (253)
..+-|-.++ .++.||- .+..+.+||..+.+.|. .......++.|.---|.++.+.+. ++-.|+.||.|++
T Consensus 220 ~Raifl~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~-----~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEi 293 (472)
T KOG0303|consen 220 ARAIFLASG-KIFTTGFSRMSERQIALWDPNNLEEPI-----ALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEI 293 (472)
T ss_pred ceeEEeccC-ceeeeccccccccceeccCcccccCcc-----eeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEe
Confidence 567788888 4555554 58899999999888765 223334566676666888877544 6667899999874
No 151
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.7e-21 Score=154.03 Aligned_cols=224 Identities=17% Similarity=0.272 Sum_probs=181.4
Q ss_pred eEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecc
Q 035558 7 LLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAH 84 (253)
Q Consensus 7 ~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 84 (253)
.||.+- + .|.+|++..+ +-+...+.+++. ..|-+++|+ ++..|++.+.+|.|.-||+.+++....+...
T Consensus 39 ~lAvsRt~g~IEiwN~~~~---w~~~~vi~g~~d----rsIE~L~W~--e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~ 109 (691)
T KOG2048|consen 39 QLAVSRTDGNIEIWNLSNN---WFLEPVIHGPED----RSIESLAWA--EGGRLFSSGLSGSITEWDLHTLKQKYNIDSN 109 (691)
T ss_pred ceeeeccCCcEEEEccCCC---ceeeEEEecCCC----CceeeEEEc--cCCeEEeecCCceEEEEecccCceeEEecCC
Confidence 355554 5 9999999875 455666777664 789999998 4566788889999999999999999999888
Q ss_pred cccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCC
Q 035558 85 DKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFP 163 (253)
Q Consensus 85 ~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~ 163 (253)
.+.|++++.+ .+..++.|++||.+..++...++ +.........++.+.+++|+| ++..++.|+.||. |++||..++
T Consensus 110 gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~-I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~-Iriwd~~~~ 186 (691)
T KOG2048|consen 110 GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK-ITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGV-IRIWDVKSG 186 (691)
T ss_pred CcceeEEEeCCccceEEeecCCceEEEEecCCce-EEEEeecccccceEEEEEecC-CccEEEecccCce-EEEEEcCCC
Confidence 8999999999 88999999999977777776554 222233345567999999999 9999999999998 999999987
Q ss_pred CCCee-------eecc-cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC
Q 035558 164 TLPVV-------ELQR-HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS 235 (253)
Q Consensus 164 ~~~~~-------~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 235 (253)
.. ++ .+.. ...-|+++.|-.++ .+++|..-|+|++||...+.... ....|...|.+++-.++
T Consensus 187 ~t-~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiq-------S~~~h~adVl~Lav~~~ 256 (691)
T KOG2048|consen 187 QT-LHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQ-------SHSCHDADVLALAVADN 256 (691)
T ss_pred ce-EEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchhh-------hhhhhhcceeEEEEcCC
Confidence 64 33 1111 33458899998776 89999999999999999887554 56678999999999999
Q ss_pred CCceEEEEcCCcEEEEE
Q 035558 236 QPDWVAIAFSTKLQILR 252 (253)
Q Consensus 236 ~~~~~~~~~~~~i~vw~ 252 (253)
+.+++++|.|+.+.-+.
T Consensus 257 ~d~vfsaGvd~~ii~~~ 273 (691)
T KOG2048|consen 257 EDRVFSAGVDPKIIQYS 273 (691)
T ss_pred CCeEEEccCCCceEEEE
Confidence 88999999999887654
No 152
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.6e-22 Score=143.89 Aligned_cols=219 Identities=11% Similarity=0.194 Sum_probs=165.0
Q ss_pred EEeecC-cEEEEEccCCc----c----ccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558 8 LATSSD-FLRVWRISDED----R----RVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD 78 (253)
Q Consensus 8 l~~~~~-~v~iw~~~~~~----~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 78 (253)
+|.+.. .|.-+++.... . .+.+...+..|. ++|++++.+ +.++|+|+.|-+|+|||++....+
T Consensus 5 IvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~-----~sitavAVs---~~~~aSGssDetI~IYDm~k~~ql 76 (362)
T KOG0294|consen 5 IVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHA-----GSITALAVS---GPYVASGSSDETIHIYDMRKRKQL 76 (362)
T ss_pred EEeeeeeEEEEEEeccCccccccccceeeeccccccccc-----cceeEEEec---ceeEeccCCCCcEEEEeccchhhh
Confidence 333334 66666665431 1 122345567777 999999986 899999999999999999999999
Q ss_pred eeeecccccEEEEEec-CC--CeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558 79 TQLIAHDKEVYDIAWG-GV--GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV 155 (253)
Q Consensus 79 ~~~~~~~~~v~~~~~~-~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i 155 (253)
..+-.|.+.|+++.|. +- +.|++|+.||.|.+|+...-. .+.....|.+.|+.++.+| .+++.++.+.|+. +
T Consensus 77 g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~---~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~-l 151 (362)
T KOG0294|consen 77 GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE---LLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQV-L 151 (362)
T ss_pred cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE---EeeeecccccccceeEecC-CCceEEEEcCCce-e
Confidence 9999999999999999 43 389999999999999998775 4444456777899999999 9999999999998 9
Q ss_pred EEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC
Q 035558 156 VVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS 235 (253)
Q Consensus 156 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 235 (253)
+.||+-.++... .+. -....+.+.|+|.|+ +++.++. ..|-+|.+.+..... ......++.++.|-..
T Consensus 152 r~WNLV~Gr~a~-v~~-L~~~at~v~w~~~Gd-~F~v~~~-~~i~i~q~d~A~v~~--------~i~~~~r~l~~~~l~~ 219 (362)
T KOG0294|consen 152 RTWNLVRGRVAF-VLN-LKNKATLVSWSPQGD-HFVVSGR-NKIDIYQLDNASVFR--------EIENPKRILCATFLDG 219 (362)
T ss_pred eeehhhcCccce-eec-cCCcceeeEEcCCCC-EEEEEec-cEEEEEecccHhHhh--------hhhccccceeeeecCC
Confidence 999998876422 221 122234499999996 6666664 468999988765221 1122356778888755
Q ss_pred CCceEEEEcCCcEEEEE
Q 035558 236 QPDWVAIAFSTKLQILR 252 (253)
Q Consensus 236 ~~~~~~~~~~~~i~vw~ 252 (253)
+ .+++++.+..+++||
T Consensus 220 ~-~L~vG~d~~~i~~~D 235 (362)
T KOG0294|consen 220 S-ELLVGGDNEWISLKD 235 (362)
T ss_pred c-eEEEecCCceEEEec
Confidence 4 688999999999987
No 153
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.91 E-value=2.6e-21 Score=156.33 Aligned_cols=233 Identities=11% Similarity=0.159 Sum_probs=176.5
Q ss_pred eEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeeccc
Q 035558 7 LLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHD 85 (253)
Q Consensus 7 ~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 85 (253)
+++..++ .+++|++.++ +.+.+++++. ..|+++.=+ |--+.++.|..+|+|.+++++.++.+.+++...
T Consensus 175 IvvGs~~G~lql~Nvrt~----K~v~~f~~~~-----s~IT~ieqs-PaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~ 244 (910)
T KOG1539|consen 175 IVVGSSQGRLQLWNVRTG----KVVYTFQEFF-----SRITAIEQS-PALDVVAIGLENGTVIIFNLKFDKILMSFKQDW 244 (910)
T ss_pred EEEeecCCcEEEEEeccC----cEEEEecccc-----cceeEeccC-CcceEEEEeccCceEEEEEcccCcEEEEEEccc
Confidence 3444445 9999999998 9999999999 899999988 778899999999999999999999999998446
Q ss_pred ccEEEEEec-CCC-eEEEEeCCCcEEEEEcCCCCCeeeeecc--------------------------------------
Q 035558 86 KEVYDIAWG-GVG-VFASVSADGSVRVFDLRDKEHSTIIYES-------------------------------------- 125 (253)
Q Consensus 86 ~~v~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------------------------------- 125 (253)
++|+.++|. ||+ .+++|+..|.+.+||++..+....+...
T Consensus 245 g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~p 324 (910)
T KOG1539|consen 245 GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVP 324 (910)
T ss_pred cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcc
Confidence 999999999 666 6677777899999999765422111100
Q ss_pred ------CC------------------------------------------------------------------------
Q 035558 126 ------SE------------------------------------------------------------------------ 127 (253)
Q Consensus 126 ------~~------------------------------------------------------------------------ 127 (253)
.+
T Consensus 325 R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~ 404 (910)
T KOG1539|consen 325 RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFE 404 (910)
T ss_pred hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecc
Confidence 00
Q ss_pred ------------------------------------CC------CCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC
Q 035558 128 ------------------------------------PD------TPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL 165 (253)
Q Consensus 128 ------------------------------------~~------~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~ 165 (253)
+. ..+++++.++ .|++.+.|...|. |-+|+++++-.
T Consensus 405 ~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~-Id~fNmQSGi~ 482 (910)
T KOG1539|consen 405 NAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGT-IDRFNMQSGIH 482 (910)
T ss_pred cchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCe-EEEEEcccCee
Confidence 00 2344445554 5555555555555 66666665432
Q ss_pred Ceeee---cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC-------------------------------
Q 035558 166 PVVEL---QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV------------------------------- 211 (253)
Q Consensus 166 ~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------------------------------- 211 (253)
...+ ..|..+|++++...-+ +.+++++.+|.+++||........
T Consensus 483 -r~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~v 560 (910)
T KOG1539|consen 483 -RKSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRV 560 (910)
T ss_pred -ecccccCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEE
Confidence 4445 4789999999999888 799999999999999998754100
Q ss_pred ---CCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 212 ---EGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 212 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
....-...+.+|+++|++++|||+|+.+++++.|+.|++||+
T Consensus 561 vD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 561 VDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred EEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 000112456689999999999999999999999999999996
No 154
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.5e-22 Score=144.11 Aligned_cols=195 Identities=15% Similarity=0.202 Sum_probs=155.6
Q ss_pred eeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeee
Q 035558 45 LTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIY 123 (253)
Q Consensus 45 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 123 (253)
-.|+.|+ +.|.+||+|..||.|.|||+.+...-..+.+|..+|++++|+ +|++|++++.|..|.+||+..+.+...+.
T Consensus 26 a~~~~Fs-~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFS-RWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEec-cCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 5689999 899999999999999999999998888899999999999999 99999999999999999999998665553
Q ss_pred ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc---cccceeEEEEecCCCCeEEEecCCCcEE
Q 035558 124 ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR---HQASVNAIAWAPHSSCHICTAGDDSQAL 200 (253)
Q Consensus 124 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 200 (253)
. .++|+.+.|+|.+.+.+++.-.+.. -.+.++..+...+..... -+..-.+..|.+.| +++++|...|.+.
T Consensus 105 f----~spv~~~q~hp~k~n~~va~~~~~s-p~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g-~yIitGtsKGkll 178 (405)
T KOG1273|consen 105 F----DSPVWGAQWHPRKRNKCVATIMEES-PVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRG-KYIITGTSKGKLL 178 (405)
T ss_pred c----cCccceeeeccccCCeEEEEEecCC-cEEEEecCCceeeccCCCccccccccccccccCCC-CEEEEecCcceEE
Confidence 3 3489999999977777777777766 667776653211111110 11122334688888 6999999999999
Q ss_pred EEeccCCCCCCCCCCCCeeeccC-CCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 201 IWDLSSMGQPVEGGLDPILAYTA-GAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 201 iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
++|..+.+... .+... ...|..+.++..|+.++.-+.|..||.+++
T Consensus 179 v~~a~t~e~va-------s~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~ 225 (405)
T KOG1273|consen 179 VYDAETLECVA-------SFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEI 225 (405)
T ss_pred EEecchheeee-------eeeechheeeeEEEEeccCcEEEEecCCceEEEEeh
Confidence 99999986543 22222 478899999999999999999999999874
No 155
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=8.1e-22 Score=143.23 Aligned_cols=235 Identities=16% Similarity=0.243 Sum_probs=174.3
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
..|.+||.|. + .|.|||+.+. ...+.+.+|. .+|++++|+ +++++|++++.|..|.+||+..+.+++.
T Consensus 33 ~~G~~lAvGc~nG~vvI~D~~T~----~iar~lsaH~-----~pi~sl~WS-~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 33 RWGDYLAVGCANGRVVIYDFDTF----RIARMLSAHV-----RPITSLCWS-RDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cCcceeeeeccCCcEEEEEcccc----chhhhhhccc-----cceeEEEec-CCCCEeeeecCCceeEEEeccCCCceeE
Confidence 3578899887 4 9999999996 7788899999 899999999 9999999999999999999999998888
Q ss_pred eecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCC-CCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558 81 LIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSE-PDTPLVRLGWNKQDPRYMATIIMDSAKVVV 157 (253)
Q Consensus 81 ~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~ 157 (253)
++ ...+|+...|+ +.+.+++.-.+..-.+-++..+.....-....+ .+....+..|++ .|++|++|...|. +.+
T Consensus 103 ir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGk-llv 179 (405)
T KOG1273|consen 103 IR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGK-LLV 179 (405)
T ss_pred EE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC-CCCEEEEecCcce-EEE
Confidence 87 67899999999 666666666666667777765432111111111 111223345777 9999999999999 999
Q ss_pred EECCCCCCCeeeecccc-cceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC-CCCCCCee---eccCCCceeEEEE
Q 035558 158 LDIRFPTLPVVELQRHQ-ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV-EGGLDPIL---AYTAGAEIEQLQW 232 (253)
Q Consensus 158 ~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~---~~~~~~~v~~~~~ 232 (253)
||..+.+ ++..++... ..|.++.++..| .+|+.-+.|..||.|+++....+. ....++.. -.-...+-.++.|
T Consensus 180 ~~a~t~e-~vas~rits~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccf 257 (405)
T KOG1273|consen 180 YDAETLE-CVASFRITSVQAIKQIIVSRKG-RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCF 257 (405)
T ss_pred Eecchhe-eeeeeeechheeeeEEEEeccC-cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheee
Confidence 9999865 467666555 678999999999 699999999999999998533221 00011111 1112445577889
Q ss_pred cCCCCceEEEE-cCCcEEEEE
Q 035558 233 SSSQPDWVAIA-FSTKLQILR 252 (253)
Q Consensus 233 ~~~~~~~~~~~-~~~~i~vw~ 252 (253)
+.+|.++++++ .-..+.||+
T Consensus 258 s~dgeYv~a~s~~aHaLYIWE 278 (405)
T KOG1273|consen 258 SGDGEYVCAGSARAHALYIWE 278 (405)
T ss_pred cCCccEEEeccccceeEEEEe
Confidence 99998777655 345688886
No 156
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=7.3e-22 Score=157.49 Aligned_cols=201 Identities=13% Similarity=0.151 Sum_probs=161.9
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec----CCCeEEEEeCCCcEEEEEcCCCCC
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG----GVGVFASVSADGSVRVFDLRDKEH 118 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~ 118 (253)
..+.+++.+ |++++||+|..-|+++||++...+....+.+|+..|.|+.|+ ...+|++++.|..|++||...+-
T Consensus 460 ~G~R~~~vS-p~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny- 537 (1080)
T KOG1408|consen 460 FGFRALAVS-PDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY- 537 (1080)
T ss_pred cceEEEEEC-CCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc-
Confidence 468899999 999999999999999999999999999999999999999999 56789999999999999998765
Q ss_pred eeeeeccCCCCCCeeEEEeeCCCC-CEEEEEEeCCCeEEEEECCCCCCCeeeeccc-----ccceeEEEEecCCCCeEEE
Q 035558 119 STIIYESSEPDTPLVRLGWNKQDP-RYMATIIMDSAKVVVLDIRFPTLPVVELQRH-----QASVNAIAWAPHSSCHICT 192 (253)
Q Consensus 119 ~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~l~~ 192 (253)
..+....+|...|+++.|--.+. ..+++++.|.. |++--.++... ...+..| ...++.|+..|.. +++++
T Consensus 538 -~l~qtld~HSssITsvKFa~~gln~~MiscGADks-imFr~~qk~~~-g~~f~r~t~t~~ktTlYDm~Vdp~~-k~v~t 613 (1080)
T KOG1408|consen 538 -DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS-IMFRVNQKASS-GRLFPRHTQTLSKTTLYDMAVDPTS-KLVVT 613 (1080)
T ss_pred -chhhhhcccccceeEEEEeecCCceEEEeccCchh-hheehhccccC-ceeccccccccccceEEEeeeCCCc-ceEEE
Confidence 34445567788999999987332 56888888886 65543332221 2222222 3468999999998 69999
Q ss_pred ecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 193 AGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 193 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
++.|..|+||+++++++.. ......+|.+....+...|.|-|+++.+.|.++.+++.
T Consensus 614 ~cQDrnirif~i~sgKq~k----~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df 670 (1080)
T KOG1408|consen 614 VCQDRNIRIFDIESGKQVK----SFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDF 670 (1080)
T ss_pred EecccceEEEeccccceee----eecccccCCCceEEEEECCCccEEEEeecCCceEEEEe
Confidence 9999999999999988654 01233457778889999999999999999999999873
No 157
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.89 E-value=2.5e-21 Score=156.00 Aligned_cols=223 Identities=17% Similarity=0.280 Sum_probs=167.8
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee--eeee----eccccc
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV--DTQL----IAHDKE 87 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~----~~~~~~ 87 (253)
.+.+|++... ..+...+... .+|+++.|+|.++++++.|..+|.|.+||++.+.. ...+ ..|..+
T Consensus 223 ~~~vW~~~~p---~~Pe~~~~~~------s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~ 293 (555)
T KOG1587|consen 223 VLLVWSLKNP---NTPELVLESP------SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEP 293 (555)
T ss_pred eEEEEecCCC---CCceEEEecC------CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcC
Confidence 5889999874 2344444443 58999999999999999999999999999987764 2222 268899
Q ss_pred EEEEEec-C--CCeEEEEeCCCcEEEEEcCCCCCeeeeec---------cCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558 88 VYDIAWG-G--VGVFASVSADGSVRVFDLRDKEHSTIIYE---------SSEPDTPLVRLGWNKQDPRYMATIIMDSAKV 155 (253)
Q Consensus 88 v~~~~~~-~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i 155 (253)
++.+.|. + +.-|++++.||.|..|+++.-..+..... .......+++++|.+.+.+.+++|+..|. |
T Consensus 294 v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~-v 372 (555)
T KOG1587|consen 294 VTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGK-V 372 (555)
T ss_pred eEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcE-E
Confidence 9999998 3 35599999999999999886543221111 11223478999999999999999999887 6
Q ss_pred EEEECC---CCC----CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCcee
Q 035558 156 VVLDIR---FPT----LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIE 228 (253)
Q Consensus 156 ~~~d~~---~~~----~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 228 (253)
..-+.. ... +++..+..|.++|+++.++|-+...+++++ |.+++||.......|. .....+...++
T Consensus 373 ~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl------~~~~~~~~~v~ 445 (555)
T KOG1587|consen 373 YKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPL------LSLDSSPDYVT 445 (555)
T ss_pred EEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcc------hhhhhccceee
Confidence 653322 222 224456678899999999999976666766 9999999988555554 45566777899
Q ss_pred EEEEcCCCCceE-EEEcCCcEEEEEC
Q 035558 229 QLQWSSSQPDWV-AIAFSTKLQILRV 253 (253)
Q Consensus 229 ~~~~~~~~~~~~-~~~~~~~i~vw~l 253 (253)
+++|||..+.++ ++..+|.+.+|||
T Consensus 446 ~vaWSptrpavF~~~d~~G~l~iWDL 471 (555)
T KOG1587|consen 446 DVAWSPTRPAVFATVDGDGNLDIWDL 471 (555)
T ss_pred eeEEcCcCceEEEEEcCCCceehhhh
Confidence 999999987666 5566999999986
No 158
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=4.1e-21 Score=140.00 Aligned_cols=239 Identities=13% Similarity=0.201 Sum_probs=171.0
Q ss_pred CCCCCceEEeecC-cEEEEEccCCc---c-----ccceeeeecCCCCccccCCeeEEEec------CCCCCEEEEEeCCC
Q 035558 1 ECQKPDLLATSSD-FLRVWRISDED---R-----RVELKSLLNGNKNSEYCGPLTSFDWN------EAEPRRIGTSSIDT 65 (253)
Q Consensus 1 sp~~~~~l~~~~~-~v~iw~~~~~~---~-----~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~l~~~~~dg 65 (253)
||+..-+|+..-+ .+++|++.... + .......++-.. ...|...+|- .|+.+++++.+.+.
T Consensus 58 SPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~e----g~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 58 SPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQE----GETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred CCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEecc----CCEEEEEEeeeccccCCCccceeeeccccC
Confidence 4555555555556 99999985420 0 011111222111 1456676664 26778999999999
Q ss_pred eEEEEeccCceeeeeeec--ccc---cEEEEEec-CCCeEEEEeCCCcEEEEEc-CCCCCeeee----eccCCCCCCeeE
Q 035558 66 TCTIWDIEREAVDTQLIA--HDK---EVYDIAWG-GVGVFASVSADGSVRVFDL-RDKEHSTII----YESSEPDTPLVR 134 (253)
Q Consensus 66 ~i~vwd~~~~~~~~~~~~--~~~---~v~~~~~~-~~~~l~~~~~dg~i~i~d~-~~~~~~~~~----~~~~~~~~~i~~ 134 (253)
-|++||.-+++....+++ |.. ...+++|+ +|.+|++| ....|++||+ |.+...... ....+..+.+.+
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc 212 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISC 212 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeee
Confidence 999999999998877763 433 44689999 99988775 5678999999 444322111 112344568899
Q ss_pred EEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEec-CCCcEEEEeccCCCCCCCC
Q 035558 135 LGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAG-DDSQALIWDLSSMGQPVEG 213 (253)
Q Consensus 135 ~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 213 (253)
++|+|.+...++++++... +-+|.-.... |+..+.+|.+.|+.++|+++|. .|++|. .|-.|..||++....+.
T Consensus 213 ~a~sP~~~~~~a~gsY~q~-~giy~~~~~~-pl~llggh~gGvThL~~~edGn-~lfsGaRk~dkIl~WDiR~~~~pv-- 287 (406)
T KOG2919|consen 213 FAFSPMDSKTLAVGSYGQR-VGIYNDDGRR-PLQLLGGHGGGVTHLQWCEDGN-KLFSGARKDDKILCWDIRYSRDPV-- 287 (406)
T ss_pred eeccCCCCcceeeecccce-eeeEecCCCC-ceeeecccCCCeeeEEeccCcC-eecccccCCCeEEEEeehhccchh--
Confidence 9999988889999998887 8887766544 6899999999999999999995 777777 58899999999987665
Q ss_pred CCCCeeeccCCC---ceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 214 GLDPILAYTAGA---EIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 214 ~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
..+..|.. .-.-....|.++.|++++.+|.|++|++
T Consensus 288 ----~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdl 326 (406)
T KOG2919|consen 288 ----YALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDL 326 (406)
T ss_pred ----hhhhhhccCccceEEEecCCCCceeeccCCCccEEEEec
Confidence 34444533 3334556788987777889999999985
No 159
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.8e-21 Score=145.56 Aligned_cols=242 Identities=15% Similarity=0.209 Sum_probs=179.3
Q ss_pred CCCceEEeecC--cEEEEEccCC--ccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558 3 QKPDLLATSSD--FLRVWRISDE--DRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD 78 (253)
Q Consensus 3 ~~~~~l~~~~~--~v~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 78 (253)
.++++||+|+| .+++|+++.. ...++++.....|. ...|.|++|+ ...+++++|..+++|...|+++.+.+
T Consensus 66 ~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H----~SNIF~L~F~-~~N~~~~SG~~~~~VI~HDiEt~qsi 140 (609)
T KOG4227|consen 66 HNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPH----RSNIFSLEFD-LENRFLYSGERWGTVIKHDIETKQSI 140 (609)
T ss_pred cCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCcc----ccceEEEEEc-cCCeeEecCCCcceeEeeecccceee
Confidence 46889999996 9999998753 11224444433322 1789999999 88899999999999999999998877
Q ss_pred eeee--cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558 79 TQLI--AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV 155 (253)
Q Consensus 79 ~~~~--~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i 155 (253)
..+. ...+.|+.+..+ -.+.|++.+.++.|.+||++....................+.|+|....+|++.+..++ +
T Consensus 141 ~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G-~ 219 (609)
T KOG4227|consen 141 YVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGG-P 219 (609)
T ss_pred eeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCC-C
Confidence 7665 223589999999 88899999999999999999876333333333444578899999999999999999999 9
Q ss_pred EEEECCCCCCCeee-----------------------------------------------ec-ccc-------cceeEE
Q 035558 156 VVLDIRFPTLPVVE-----------------------------------------------LQ-RHQ-------ASVNAI 180 (253)
Q Consensus 156 ~~~d~~~~~~~~~~-----------------------------------------------~~-~~~-------~~i~~~ 180 (253)
.+||.+....++.. ++ .|. ..+.++
T Consensus 220 ~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~ 299 (609)
T KOG4227|consen 220 NVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSM 299 (609)
T ss_pred CceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeee
Confidence 99999875431110 00 011 134455
Q ss_pred EEecCCCCeEEEecCCCcEEEEeccCCCCCC----------------CCCCCCeeeccCCCceeEEEEcCCCCceEEEEc
Q 035558 181 AWAPHSSCHICTAGDDSQALIWDLSSMGQPV----------------EGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAF 244 (253)
Q Consensus 181 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 244 (253)
+|..+ +.+++|+.+-.|.+|.+....... ........+.+|..-++.+.|+|....+++.+-
T Consensus 300 ~F~~D--~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGV 377 (609)
T KOG4227|consen 300 TFIDD--YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGV 377 (609)
T ss_pred eeecc--eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccch
Confidence 55544 469999999999999987543111 011223567799999999999999877778889
Q ss_pred CCcEEEEE
Q 035558 245 STKLQILR 252 (253)
Q Consensus 245 ~~~i~vw~ 252 (253)
.+.+++|.
T Consensus 378 E~~~KlWS 385 (609)
T KOG4227|consen 378 ENSFKLWS 385 (609)
T ss_pred hhheeccc
Confidence 99999994
No 160
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=2.2e-21 Score=153.79 Aligned_cols=237 Identities=12% Similarity=0.164 Sum_probs=182.9
Q ss_pred CCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce----e
Q 035558 4 KPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA----V 77 (253)
Q Consensus 4 ~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~ 77 (253)
+++.+++-+. ..++|..... ........+.||. +.|.+++|+ |.|.+|++.+.|.+-|++-.-..+ .
T Consensus 327 n~~~ii~~g~~Gg~hlWkt~d~-~~w~~~~~iSGH~-----~~V~dv~W~-psGeflLsvs~DQTTRlFa~wg~q~~wHE 399 (764)
T KOG1063|consen 327 NSNVIIAHGRTGGFHLWKTKDK-TFWTQEPVISGHV-----DGVKDVDWD-PSGEFLLSVSLDQTTRLFARWGRQQEWHE 399 (764)
T ss_pred CCCEEEEecccCcEEEEeccCc-cceeecccccccc-----ccceeeeec-CCCCEEEEeccccceeeecccccccceee
Confidence 4455555553 9999994332 4455666778898 899999999 899999999999999998765222 3
Q ss_pred eeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCC--------------------------------CCee----
Q 035558 78 DTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDK--------------------------------EHST---- 120 (253)
Q Consensus 78 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~--------------------------------~~~~---- 120 (253)
+...+-|...++|++|- ....|++|.++..+|+|+.... +...
T Consensus 400 iaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~ 479 (764)
T KOG1063|consen 400 IARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGET 479 (764)
T ss_pred ecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccc
Confidence 44445688899999998 5778999999999999976210 0000
Q ss_pred -------------------------------------eeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC----eEEEEE
Q 035558 121 -------------------------------------IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA----KVVVLD 159 (253)
Q Consensus 121 -------------------------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~----~i~~~d 159 (253)
.+.+.-+|...|++++.+| +++++|+++.... .|++|+
T Consensus 480 ~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~ 558 (764)
T KOG1063|consen 480 NTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWN 558 (764)
T ss_pred ccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEe
Confidence 0001122556799999999 9999999886542 489999
Q ss_pred CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558 160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW 239 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 239 (253)
..+..+ ++.+..|+-.|+.++|+||+ ++|++.|.|+++.+|......... ........|..-|.+..|+|++.++
T Consensus 559 t~~W~~-~~~L~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~e---~~fa~~k~HtRIIWdcsW~pde~~F 633 (764)
T KOG1063|consen 559 TANWLQ-VQELEGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKDE---FRFACLKAHTRIIWDCSWSPDEKYF 633 (764)
T ss_pred ccchhh-hheecccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccchh---hhhccccccceEEEEcccCccccee
Confidence 988665 67899999999999999999 799999999999999986554332 1112356799999999999999999
Q ss_pred EEEEcCCcEEEEEC
Q 035558 240 VAIAFSTKLQILRV 253 (253)
Q Consensus 240 ~~~~~~~~i~vw~l 253 (253)
++++.|..++||++
T Consensus 634 aTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 634 ATASRDKKVKVWEE 647 (764)
T ss_pred EEecCCceEEEEec
Confidence 99999999999974
No 161
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.4e-20 Score=136.37 Aligned_cols=209 Identities=18% Similarity=0.321 Sum_probs=154.0
Q ss_pred cCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc----eeeeeeecccccEEEEEec---CCCeEEEEeCCC
Q 035558 34 NGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE----AVDTQLIAHDKEVYDIAWG---GVGVFASVSADG 106 (253)
Q Consensus 34 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~---~~~~l~~~~~dg 106 (253)
.+|. +-|.++.|. +.|+.+|+++.|++|+|||.+.. .+....+.|.+.|..+.|. -|+.+|+++.|+
T Consensus 10 s~h~-----DlihdVs~D-~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr 83 (361)
T KOG2445|consen 10 SGHK-----DLIHDVSFD-FYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR 83 (361)
T ss_pred cCCc-----ceeeeeeec-ccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCC
Confidence 4566 789999999 89999999999999999997544 3666788999999999998 789999999999
Q ss_pred cEEEEEcCCCC------CeeeeeccCCCCCCeeEEEeeCCC-CCEEEEEEeCCCeEEEEECCCCCC-----Ceeeec---
Q 035558 107 SVRVFDLRDKE------HSTIIYESSEPDTPLVRLGWNKQD-PRYMATIIMDSAKVVVLDIRFPTL-----PVVELQ--- 171 (253)
Q Consensus 107 ~i~i~d~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~i~~~d~~~~~~-----~~~~~~--- 171 (253)
++.||.-.... ............+.|+.+.|.|.. |-.+|+++.||. ++||+.-.... ...++.
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~-lRIYEA~dp~nLs~W~Lq~Ei~~~~ 162 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGI-LRIYEAPDPMNLSQWTLQHEIQNVI 162 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcE-EEEEecCCccccccchhhhhhhhcc
Confidence 99999763211 112223344556699999999953 567888888988 99998765321 122222
Q ss_pred ----ccccceeEEEEecCC--CCeEEEecCC-----CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC---
Q 035558 172 ----RHQASVNAIAWAPHS--SCHICTAGDD-----SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP--- 237 (253)
Q Consensus 172 ----~~~~~i~~~~~~~~~--~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--- 237 (253)
.+..+..|+.|+|.. +.+|+.|+.+ +.++||......... .....+.+|..+|++++|.|+-.
T Consensus 163 ~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw---~kva~L~d~~dpI~di~wAPn~Gr~y 239 (361)
T KOG2445|consen 163 DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKW---LKVAELPDHTDPIRDISWAPNIGRSY 239 (361)
T ss_pred CCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCccee---eeehhcCCCCCcceeeeeccccCCce
Confidence 356678899999842 2378888865 589999877654221 11235558999999999999743
Q ss_pred ceE-EEEcCCcEEEEEC
Q 035558 238 DWV-AIAFSTKLQILRV 253 (253)
Q Consensus 238 ~~~-~~~~~~~i~vw~l 253 (253)
+++ +++.|| |+||++
T Consensus 240 ~~lAvA~kDg-v~I~~v 255 (361)
T KOG2445|consen 240 HLLAVATKDG-VRIFKV 255 (361)
T ss_pred eeEEEeecCc-EEEEEE
Confidence 344 455566 999985
No 162
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=5.5e-22 Score=148.90 Aligned_cols=197 Identities=16% Similarity=0.196 Sum_probs=155.0
Q ss_pred eEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeec
Q 035558 46 TSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYE 124 (253)
Q Consensus 46 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 124 (253)
.+++|+ .++..+++|+.||++|||+..+...+.....|...|.++.|+ ++.+|++.+.| ..++|+.+++........
T Consensus 148 k~vaf~-~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFN-GDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEc-CCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 578999 899999999999999999987777777788899999999999 99999999999 899999999965444332
Q ss_pred cCCCCCCeeEEEeeCCCC---C-EEEEEEeCCCeEEEEECCCCCC----CeeeecccccceeEEEEecCCCCeEEEecCC
Q 035558 125 SSEPDTPLVRLGWNKQDP---R-YMATIIMDSAKVVVLDIRFPTL----PVVELQRHQASVNAIAWAPHSSCHICTAGDD 196 (253)
Q Consensus 125 ~~~~~~~i~~~~~~~~~~---~-~l~~~~~~~~~i~~~d~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 196 (253)
. ..+.....+.|.. ++ . ++++.-..+..|..||+..... +..+.......|.+++.+++| ++++.|+.|
T Consensus 226 ~-~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG-kf~AlGT~d 302 (398)
T KOG0771|consen 226 F-SKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG-KFLALGTMD 302 (398)
T ss_pred c-ccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC-cEEEEeccC
Confidence 2 2333566777876 33 2 3444434443477777754432 222233334579999999999 799999999
Q ss_pred CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 197 SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 197 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
|.|.|++..+.+... .....|...|+.+.|+|+.+++.+.+.+....|..|
T Consensus 303 GsVai~~~~~lq~~~------~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQ------YVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred CcEEEEEeceeeeeE------eehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 999999999988665 566679999999999999999999999998887653
No 163
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.89 E-value=2.4e-21 Score=139.18 Aligned_cols=197 Identities=19% Similarity=0.325 Sum_probs=154.3
Q ss_pred CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecC-CCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNE-AEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
||+.-+++-.+ .|.+|+++... +....+......++....++-+|+| .+++.+++. .|+++..||+++.+....
T Consensus 133 Pns~klasm~dn~i~l~~l~ess---~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~s 208 (370)
T KOG1007|consen 133 PNSDKLASMDDNNIVLWSLDESS---KIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNS 208 (370)
T ss_pred CCCCeeEEeccCceEEEEcccCc---chheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcc
Confidence 37777888778 99999998862 2133333333333336788999997 577777765 589999999998877666
Q ss_pred ee-cccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558 81 LI-AHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV 157 (253)
Q Consensus 81 ~~-~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~ 157 (253)
+. +|...|.++.|+ ...+|++|+.||.|++||.|..+. .+.....|...+.++.|+|...+++++++.|.. |.+
T Consensus 209 I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~--pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~-V~L 285 (370)
T KOG1007|consen 209 IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF--PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA-VNL 285 (370)
T ss_pred hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--cccccCCCceEEEEEEecCccceEEEecCCCce-eEE
Confidence 65 788899999999 566899999999999999998773 455666777799999999988999999999998 999
Q ss_pred EECCCCC----------------------------CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccC
Q 035558 158 LDIRFPT----------------------------LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSS 206 (253)
Q Consensus 158 ~d~~~~~----------------------------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 206 (253)
|...... ..+.++..|+..|++++|+.-.+-.+++-+.||++.|=.+..
T Consensus 286 sca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 286 SCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred EeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 8653211 024456779999999999998888889999999998876654
No 164
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1.3e-21 Score=151.83 Aligned_cols=232 Identities=15% Similarity=0.239 Sum_probs=170.4
Q ss_pred CCceEEeec-C-cEEEEEccC----CccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc--
Q 035558 4 KPDLLATSS-D-FLRVWRISD----EDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-- 75 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-- 75 (253)
....|++++ + .+++|++.. .....+++.++++|+ ++|.|++.. +++..+++|+.||+|+.|++...
T Consensus 305 sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~-----gPVl~v~v~-~n~~~~ysgg~Dg~I~~w~~p~n~d 378 (577)
T KOG0642|consen 305 SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHE-----GPVLCVVVP-SNGEHCYSGGIDGTIRCWNLPPNQD 378 (577)
T ss_pred CCCeEEEeccccchhhhhhcccCCccccceeeeEEEeccc-----CceEEEEec-CCceEEEeeccCceeeeeccCCCCC
Confidence 334566777 5 999999932 124567889999999 999999998 89999999999999999965421
Q ss_pred --------eeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEE
Q 035558 76 --------AVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMA 146 (253)
Q Consensus 76 --------~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 146 (253)
.....+.||.+.|+.++++ ....|++++.||++++|+...... ..+......+.-.++.+-.......+
T Consensus 379 p~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~--~~f~~~~e~g~Plsvd~~ss~~a~~~ 456 (577)
T KOG0642|consen 379 PDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP--CTFGEPKEHGYPLSVDRTSSRPAHSL 456 (577)
T ss_pred cccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc--cccCCccccCCcceEeeccchhHhhh
Confidence 1345677999999999999 888899999999999999887764 22222222235566666542223333
Q ss_pred EEEeCCCeEEEEECCCCCCCeeeecc-------cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCee
Q 035558 147 TIIMDSAKVVVLDIRFPTLPVVELQR-------HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPIL 219 (253)
Q Consensus 147 ~~~~~~~~i~~~d~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 219 (253)
+....+. -.++++..... +..+.. -...++.+.++|.++ +.+++..|+.|+++|..++.... .
T Consensus 457 ~s~~~~~-~~~~~~ev~s~-~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~~~~l~-------s 526 (577)
T KOG0642|consen 457 ASFRFGY-TSIDDMEVVSD-LLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKTGKILH-------S 526 (577)
T ss_pred hhccccc-ccchhhhhhhh-eeeccccCCCcccccCccceEEecCCCC-eeEecccCCceecccccccccch-------h
Confidence 3222222 33334333221 222221 123577889999985 99999999999999999987544 6
Q ss_pred eccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 220 AYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 220 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
...|...++++++.|+|.++++++.|+.+++|++
T Consensus 527 ~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 527 MVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred eeeccceecceeecCCCceEEeecCCceeehhhc
Confidence 6678999999999999999999999999999975
No 165
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.1e-20 Score=147.88 Aligned_cols=228 Identities=18% Similarity=0.208 Sum_probs=181.0
Q ss_pred CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee--
Q 035558 3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT-- 79 (253)
Q Consensus 3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-- 79 (253)
++++++.++.+ .|.-||+.+. +....++... ++|.+++.+ +.+..++.|++||.++.++...++...
T Consensus 79 e~~RLFS~g~sg~i~EwDl~~l----k~~~~~d~~g-----g~IWsiai~-p~~~~l~IgcddGvl~~~s~~p~~I~~~r 148 (691)
T KOG2048|consen 79 EGGRLFSSGLSGSITEWDLHTL----KQKYNIDSNG-----GAIWSIAIN-PENTILAIGCDDGVLYDFSIGPDKITYKR 148 (691)
T ss_pred cCCeEEeecCCceEEEEecccC----ceeEEecCCC-----cceeEEEeC-CccceEEeecCCceEEEEecCCceEEEEe
Confidence 35666666667 9999999987 7777777776 899999999 778899999999988888887776433
Q ss_pred eeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeee-----ccCCCCCCeeEEEeeCCCCCEEEEEEeCCC
Q 035558 80 QLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIY-----ESSEPDTPLVRLGWNKQDPRYMATIIMDSA 153 (253)
Q Consensus 80 ~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 153 (253)
.+...++.|.+++|+ ++..+++|+.||.|++||..++....... .....+.-|+++.|- ....|++|...|.
T Consensus 149 ~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~ 226 (691)
T KOG2048|consen 149 SLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGT 226 (691)
T ss_pred ecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCce
Confidence 344457899999999 99999999999999999999987655221 112233467888877 4568899988888
Q ss_pred eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEc
Q 035558 154 KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWS 233 (253)
Q Consensus 154 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 233 (253)
|.+||...+.. ++.+..|.+.|.+++..+++ .++++++.|+.|..|...+..... ........|...+.+++..
T Consensus 227 -V~FWd~~~gTL-iqS~~~h~adVl~Lav~~~~-d~vfsaGvd~~ii~~~~~~~~~~w---v~~~~r~~h~hdvrs~av~ 300 (691)
T KOG2048|consen 227 -VTFWDSIFGTL-IQSHSCHDADVLALAVADNE-DRVFSAGVDPKIIQYSLTTNKSEW---VINSRRDLHAHDVRSMAVI 300 (691)
T ss_pred -EEEEcccCcch-hhhhhhhhcceeEEEEcCCC-CeEEEccCCCceEEEEecCCccce---eeeccccCCcccceeeeee
Confidence 99999998775 88899999999999999998 499999999999999887765411 1112344688899999998
Q ss_pred CCCCceEEEEcCCcEEE
Q 035558 234 SSQPDWVAIAFSTKLQI 250 (253)
Q Consensus 234 ~~~~~~~~~~~~~~i~v 250 (253)
++ .+++++.|..+.+
T Consensus 301 ~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 301 EN--ALISGGRDFTLAI 315 (691)
T ss_pred cc--eEEecceeeEEEE
Confidence 87 5888888887765
No 166
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.88 E-value=9.2e-21 Score=150.37 Aligned_cols=229 Identities=14% Similarity=0.173 Sum_probs=172.6
Q ss_pred CCCCceEEeecCcEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce-----
Q 035558 2 CQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA----- 76 (253)
Q Consensus 2 p~~~~~l~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----- 76 (253)
|+..++++++++.+.+||.+.+ ....++++|+ +.|.+++|+ .+|..+++|+.|..|.+|+.+-.-
T Consensus 22 PDGsqL~lAAg~rlliyD~ndG----~llqtLKgHK-----DtVycVAys-~dGkrFASG~aDK~VI~W~~klEG~LkYS 91 (1081)
T KOG1538|consen 22 PDGTQLILAAGSRLLVYDTSDG----TLLQPLKGHK-----DTVYCVAYA-KDGKRFASGSADKSVIIWTSKLEGILKYS 91 (1081)
T ss_pred CCCceEEEecCCEEEEEeCCCc----cccccccccc-----ceEEEEEEc-cCCceeccCCCceeEEEecccccceeeec
Confidence 6666777777779999999998 8999999999 899999999 999999999999999999865321
Q ss_pred ---eeeee---------------------------ecc--cccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeee
Q 035558 77 ---VDTQL---------------------------IAH--DKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIY 123 (253)
Q Consensus 77 ---~~~~~---------------------------~~~--~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 123 (253)
.++.+ ..| ...+.+.+|. +|++|+.|-.+|+|.+-+-. +++...+.
T Consensus 92 H~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~ 170 (1081)
T KOG1538|consen 92 HNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIE 170 (1081)
T ss_pred cCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEe
Confidence 11110 001 2457778888 99999999999999997544 33444555
Q ss_pred ccCCCCCCeeEEEeeCCCC----CEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcE
Q 035558 124 ESSEPDTPLVRLGWNKQDP----RYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQA 199 (253)
Q Consensus 124 ~~~~~~~~i~~~~~~~~~~----~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i 199 (253)
.+.+.+.+|.+++|+|..+ ..+++.....+ +.+|.+.... +..-+.-.-...|+.+.|+|+ +++.|+.|+.+
T Consensus 171 Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT-LSFy~LsG~~--Igk~r~L~FdP~CisYf~NGE-y~LiGGsdk~L 246 (1081)
T KOG1538|consen 171 RPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT-LSFYQLSGKQ--IGKDRALNFDPCCISYFTNGE-YILLGGSDKQL 246 (1081)
T ss_pred CCCCCCCCceEEEecCCCCCCccceEEEEeccce-eEEEEeccee--ecccccCCCCchhheeccCCc-EEEEccCCCce
Confidence 6667788999999999543 46777776666 8888876422 222222233457899999995 99999999999
Q ss_pred EEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 200 LIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 200 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
.+|-.+. -.. -........|+.++..|+++.+..++.||++--+++
T Consensus 247 ~~fTR~G-vrL-------GTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 247 SLFTRDG-VRL-------GTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred EEEeecC-eEE-------eeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 9995433 211 133446789999999999999999999999876653
No 167
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=9.8e-21 Score=141.32 Aligned_cols=197 Identities=17% Similarity=0.249 Sum_probs=152.5
Q ss_pred CCCCCceEEeecC--cEEEEEccCCc---cccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc
Q 035558 1 ECQKPDLLATSSD--FLRVWRISDED---RRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE 75 (253)
Q Consensus 1 sp~~~~~l~~~~~--~v~iw~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 75 (253)
.|.+...+|+|++ +|.||++..+. ...+++..+.+|. ..|--+.|+|.-.+.|++++.|.+|.+||+.++
T Consensus 90 ~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~-----rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tg 164 (472)
T KOG0303|consen 90 CPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQ-----RRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTG 164 (472)
T ss_pred CccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecc-----eeEEEEeecccchhhHhhccCCceEEEEeccCC
Confidence 4888999999995 99999987641 2235678899999 899999999888899999999999999999999
Q ss_pred eeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCC-CeeEEEeeCCCCCEEEEEEeC--
Q 035558 76 AVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDT-PLVRLGWNKQDPRYMATIIMD-- 151 (253)
Q Consensus 76 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~~~~~~-- 151 (253)
+.+.++. |..-|+++.|+ +|.+|++.+.|..|++||.++++... ....|++ .-..+.|-. ++. +++.+..
T Consensus 165 eali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~---e~~~heG~k~~Raifl~-~g~-i~tTGfsr~ 238 (472)
T KOG0303|consen 165 EALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVS---EGVAHEGAKPARAIFLA-SGK-IFTTGFSRM 238 (472)
T ss_pred ceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEee---ecccccCCCcceeEEec-cCc-eeeeccccc
Confidence 9888887 99999999999 99999999999999999999998433 3333332 334455655 677 4444432
Q ss_pred -CCeEEEEECCCCCCCeeeec-ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558 152 -SAKVVVLDIRFPTLPVVELQ-RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 152 -~~~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
..++-+||..+.++|+.... ..+..|.---|.|+.....++|-.|+.||-|.+....
T Consensus 239 seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 239 SERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 23499999988777643322 2345677778889885344566689999999998754
No 168
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.88 E-value=3.6e-20 Score=149.40 Aligned_cols=239 Identities=17% Similarity=0.230 Sum_probs=177.4
Q ss_pred CCCCCceEEeecC--cEEEEEccCCccc-cc-eeeeecCCCCccccCCeeEEEecCCCC--CEEEEEeCCCeEEEEeccC
Q 035558 1 ECQKPDLLATSSD--FLRVWRISDEDRR-VE-LKSLLNGNKNSEYCGPLTSFDWNEAEP--RRIGTSSIDTTCTIWDIER 74 (253)
Q Consensus 1 sp~~~~~l~~~~~--~v~iw~~~~~~~~-~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~ 74 (253)
+|.++.++++|.. .|-+||+..+... .. .......|. .+++.+.|- .+. .-+++++.||.|..|+++.
T Consensus 251 ~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~-----~~v~~vvW~-~~~~~~~f~s~ssDG~i~~W~~~~ 324 (555)
T KOG1587|consen 251 CPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHS-----EPVTAVVWL-QNEHNTEFFSLSSDGSICSWDTDM 324 (555)
T ss_pred ccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCC-----cCeEEEEEe-ccCCCCceEEEecCCcEeeeeccc
Confidence 4778899999985 9999999886331 11 112223455 899999997 333 4488999999999998764
Q ss_pred cee-e-----eeee------cccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCC-e----eeeeccCCCCCCeeEE
Q 035558 75 EAV-D-----TQLI------AHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEH-S----TIIYESSEPDTPLVRL 135 (253)
Q Consensus 75 ~~~-~-----~~~~------~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~-~----~~~~~~~~~~~~i~~~ 135 (253)
... . .... .-...+++++|. +...|+.|+++|.|.--+-..... . ........|.++|+.+
T Consensus 325 l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v 404 (555)
T KOG1587|consen 325 LSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAV 404 (555)
T ss_pred cccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEee
Confidence 331 1 1111 123468899999 889999999999988744333221 1 1233445677899999
Q ss_pred EeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCC-CCCCC
Q 035558 136 GWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQ-PVEGG 214 (253)
Q Consensus 136 ~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~ 214 (253)
.++|....++++++ |.+ +++|.......|+..+..+...+++++|+|-.+..|+++..||.|.+||+..... |.
T Consensus 405 ~~nPF~~k~fls~g-DW~-vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv--- 479 (555)
T KOG1587|consen 405 SRNPFYPKNFLSVG-DWT-VRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV--- 479 (555)
T ss_pred ecCCCccceeeeec-cce-eEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc---
Confidence 99998888888877 777 9999988556688888888889999999999888999999999999999986542 22
Q ss_pred CCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 215 LDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 215 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
.....+....+.+.|++.++.++++...|.+.+|+|
T Consensus 480 ---~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 480 ---LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred ---ccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 222233667788899999987778888999999986
No 169
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.3e-20 Score=147.35 Aligned_cols=225 Identities=15% Similarity=0.221 Sum_probs=172.1
Q ss_pred CCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce-----
Q 035558 4 KPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA----- 76 (253)
Q Consensus 4 ~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----- 76 (253)
.|.+||+|++ +||||.+.++ ++++++.-- +.|.|++|+|.....+++++....+.+.+..-|.
T Consensus 411 ~G~wlasGsdDGtvriWEi~Tg----Rcvr~~~~d------~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~ 480 (733)
T KOG0650|consen 411 SGEWLASGSDDGTVRIWEIATG----RCVRTVQFD------SEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVG 480 (733)
T ss_pred CcceeeecCCCCcEEEEEeecc----eEEEEEeec------ceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhc
Confidence 7889999996 9999999998 888887655 5799999996433334444444445555432210
Q ss_pred --------------------------------eeeeeecccccEEEEEec-CCCeEEEEeCC---CcEEEEEcCCCCCee
Q 035558 77 --------------------------------VDTQLIAHDKEVYDIAWG-GVGVFASVSAD---GSVRVFDLRDKEHST 120 (253)
Q Consensus 77 --------------------------------~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d---g~i~i~d~~~~~~~~ 120 (253)
-+.....|..+|.++.|+ .|++|++...+ ..|.|+++......
T Consensus 481 ~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ- 559 (733)
T KOG0650|consen 481 PTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ- 559 (733)
T ss_pred chhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc-
Confidence 011223477899999999 99999998764 46889988876532
Q ss_pred eeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEE
Q 035558 121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQAL 200 (253)
Q Consensus 121 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 200 (253)
.......+.+.++.|+| ...+|++++... |++||+.... .++.+......|.+++.+|.|+ -|+.|+.|+.+.
T Consensus 560 --~PF~kskG~vq~v~FHP-s~p~lfVaTq~~--vRiYdL~kqe-lvKkL~tg~kwiS~msihp~GD-nli~gs~d~k~~ 632 (733)
T KOG0650|consen 560 --SPFRKSKGLVQRVKFHP-SKPYLFVATQRS--VRIYDLSKQE-LVKKLLTGSKWISSMSIHPNGD-NLILGSYDKKMC 632 (733)
T ss_pred --CchhhcCCceeEEEecC-CCceEEEEeccc--eEEEehhHHH-HHHHHhcCCeeeeeeeecCCCC-eEEEecCCCeeE
Confidence 23334455899999999 666666666543 9999998744 3667776778899999999996 899999999999
Q ss_pred EEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 201 IWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 201 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
.||+.-..+|. ..+.-|...+++|+||+.-+.+++++.|+.+.|+.
T Consensus 633 WfDldlsskPy------k~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 633 WFDLDLSSKPY------KTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred EEEcccCcchh------HHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 99999888776 57778999999999999999777888889998874
No 170
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=8.4e-20 Score=144.98 Aligned_cols=233 Identities=19% Similarity=0.274 Sum_probs=176.5
Q ss_pred CceEEeec-C-cEEEEEccCCccc-----------------ccee----------eeecCCCCccccCCeeEEEecCCCC
Q 035558 5 PDLLATSS-D-FLRVWRISDEDRR-----------------VELK----------SLLNGNKNSEYCGPLTSFDWNEAEP 55 (253)
Q Consensus 5 ~~~l~~~~-~-~v~iw~~~~~~~~-----------------~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~ 55 (253)
.-+||+++ | .||||.+...+.. .... ..+.||+ +-|.++.|+ |.+
T Consensus 206 ~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe-----DWV~sv~W~-p~~ 279 (764)
T KOG1063|consen 206 DLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE-----DWVYSVWWH-PEG 279 (764)
T ss_pred cEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc-----cceEEEEEc-cch
Confidence 34677777 4 9999998654200 0111 2234788 899999999 778
Q ss_pred CEEEEEeCCCeEEEEeccCce-------eeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCC
Q 035558 56 RRIGTSSIDTTCTIWDIEREA-------VDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSE 127 (253)
Q Consensus 56 ~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 127 (253)
..|++++.|.++.+|...+.. .+..+.+.........|+ +++.+++-+.-|-.++|...............+
T Consensus 280 ~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSG 359 (764)
T KOG1063|consen 280 LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISG 359 (764)
T ss_pred hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccc
Confidence 889999999999999887552 122233445568889999 999999999999999998444443344445568
Q ss_pred CCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC------------------------------------------
Q 035558 128 PDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL------------------------------------------ 165 (253)
Q Consensus 128 ~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~------------------------------------------ 165 (253)
|...|..++|+| .|.++++.+.|.+ -+++-.-..+.
T Consensus 360 H~~~V~dv~W~p-sGeflLsvs~DQT-TRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aP 437 (764)
T KOG1063|consen 360 HVDGVKDVDWDP-SGEFLLSVSLDQT-TRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAP 437 (764)
T ss_pred ccccceeeeecC-CCCEEEEeccccc-eeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCc
Confidence 888999999999 8999999988876 55542210000
Q ss_pred -------------------------------------------------------------------------------C
Q 035558 166 -------------------------------------------------------------------------------P 166 (253)
Q Consensus 166 -------------------------------------------------------------------------------~ 166 (253)
.
T Consensus 438 k~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPE 517 (764)
T KOG1063|consen 438 KSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPE 517 (764)
T ss_pred HHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchh
Confidence 1
Q ss_pred eeeecccccceeEEEEecCCCCeEEEecCC-----CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558 167 VVELQRHQASVNAIAWAPHSSCHICTAGDD-----SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA 241 (253)
Q Consensus 167 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 241 (253)
++.+-+|...|++++.+|++ +++++++.. ..|++|+..+..+.. .+.+|.-.|+.++|||++++|++
T Consensus 518 v~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~~~~-------~L~~HsLTVT~l~FSpdg~~LLs 589 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWLQVQ-------ELEGHSLTVTRLAFSPDGRYLLS 589 (764)
T ss_pred hHHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchhhhh-------eecccceEEEEEEECCCCcEEEE
Confidence 33345788899999999999 699998853 578999999877654 78899999999999999999999
Q ss_pred EEcCCcEEEEEC
Q 035558 242 IAFSTKLQILRV 253 (253)
Q Consensus 242 ~~~~~~i~vw~l 253 (253)
++.|..+.+|+.
T Consensus 590 vsRDRt~sl~~~ 601 (764)
T KOG1063|consen 590 VSRDRTVSLYEV 601 (764)
T ss_pred eecCceEEeeee
Confidence 999999999973
No 171
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.87 E-value=3.3e-19 Score=132.12 Aligned_cols=227 Identities=16% Similarity=0.208 Sum_probs=164.8
Q ss_pred CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCC--eEEEEeccCceeee
Q 035558 3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT--TCTIWDIEREAVDT 79 (253)
Q Consensus 3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~ 79 (253)
++..+|..|+. ..++|..+.. .. -.|...+- ..|..+-|+ ..++|..+.+. .+++++++....+.
T Consensus 15 qd~~~lsvGs~~Gyk~~~~~~~----~k----~~~~~~~~-~~IvEmLFS---SSLvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 15 QDSTLLSVGSKDGYKIFSCSPF----EK----CFSKDTEG-VSIVEMLFS---SSLVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred cceeEEEccCCCceeEEecCch----HH----hhcccCCC-eEEEEeecc---cceeEEEecCCCceEEEEEcccCceEE
Confidence 45567777886 8888888764 21 11111100 356666776 55666655543 58999998887777
Q ss_pred eeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEE-EEeCCCeEEEE
Q 035558 80 QLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT-IIMDSAKVVVL 158 (253)
Q Consensus 80 ~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~~~~~i~~~ 158 (253)
.+. ...+|.++.++ .+.|+++-++ .|+|||+++.+....+...+.+...+..+++++ .+.++|. ++.+.+.|.+|
T Consensus 83 e~~-fpt~IL~VrmN-r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 83 EIF-FPTSILAVRMN-RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred EEe-cCCceEEEEEc-cceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCC-CCceEEecCCCCCceEEEE
Confidence 665 46789999886 4445555444 499999999987776666545555677777766 5556664 34444459999
Q ss_pred ECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCc-EEEEeccCCCCCCCCCCCCeeecc-CCCceeEEEEcCCC
Q 035558 159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQ-ALIWDLSSMGQPVEGGLDPILAYT-AGAEIEQLQWSSSQ 236 (253)
Q Consensus 159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~ 236 (253)
|+.+.+ ++..+..|++++.+++|+++| .+|||+|+.|+ ||||.+.+++... ....+ -...|.+++|+|++
T Consensus 159 d~~nl~-~v~~I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~G~kl~------eFRRG~~~~~IySL~Fs~ds 230 (391)
T KOG2110|consen 159 DTINLQ-PVNTINAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPEGQKLY------EFRRGTYPVSIYSLSFSPDS 230 (391)
T ss_pred Ecccce-eeeEEEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCCccEee------eeeCCceeeEEEEEEECCCC
Confidence 999866 588999999999999999999 79999998886 5899999988655 12222 24578999999999
Q ss_pred CceEEEEcCCcEEEEEC
Q 035558 237 PDWVAIAFSTKLQILRV 253 (253)
Q Consensus 237 ~~~~~~~~~~~i~vw~l 253 (253)
++|.+.+..++|++|+|
T Consensus 231 ~~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 231 QFLAASSNTETVHIFKL 247 (391)
T ss_pred CeEEEecCCCeEEEEEe
Confidence 98888899999999986
No 172
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=1.4e-20 Score=137.47 Aligned_cols=188 Identities=18% Similarity=0.297 Sum_probs=144.8
Q ss_pred ceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee--
Q 035558 6 DLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL-- 81 (253)
Q Consensus 6 ~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-- 81 (253)
-++|+++. .|+|.|+..+ ++...+.+|. .+|+.+.++|.+.+++++++.|..|++|++++..++..+
T Consensus 106 p~la~~G~~GvIrVid~~~~----~~~~~~~ghG-----~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSG----QCSKNYRGHG-----GSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred eeEEeecceeEEEEEecchh----hhccceeccC-----ccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc
Confidence 35666664 9999999998 9999999999 899999999888999999999999999999999988776
Q ss_pred -ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCe----------------------e--ee-------------
Q 035558 82 -IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHS----------------------T--II------------- 122 (253)
Q Consensus 82 -~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~----------------------~--~~------------- 122 (253)
.+|.+.|.++.|+ ++..+++++.|.++++|++..++.. . +.
T Consensus 177 ~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDC 256 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDC 256 (385)
T ss_pred cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHH
Confidence 4799999999999 9999999999999999999733200 0 00
Q ss_pred -------------------ecc-----------------------CCCCCCeeE--EEeeCCCCCEEEEEEeCCCeEEEE
Q 035558 123 -------------------YES-----------------------SEPDTPLVR--LGWNKQDPRYMATIIMDSAKVVVL 158 (253)
Q Consensus 123 -------------------~~~-----------------------~~~~~~i~~--~~~~~~~~~~l~~~~~~~~~i~~~ 158 (253)
..+ ......|.- .+|+| -++.||.|...|. |.+|
T Consensus 257 vrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~la~gnq~g~-v~vw 334 (385)
T KOG1034|consen 257 VRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-WQKMLALGNQSGK-VYVW 334 (385)
T ss_pred HHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-HHHHHhhccCCCc-EEEE
Confidence 000 001112222 23445 5667788888888 9999
Q ss_pred ECCCCCCCee-eecc--cccceeEEEEecCCCCeEEEecCCCcEEEEecc
Q 035558 159 DIRFPTLPVV-ELQR--HQASVNAIAWAPHSSCHICTAGDDSQALIWDLS 205 (253)
Q Consensus 159 d~~~~~~~~~-~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 205 (253)
|++....+.. ++.. ....|...+|+.++ .+|+....|++|.-||..
T Consensus 335 dL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dg-s~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 335 DLDNNEPPKCTTLTHSKSGSTVRQTSFSRDG-SILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ECCCCCCccCceEEeccccceeeeeeecccC-cEEEEEeCCCcEEEEEee
Confidence 9998664322 2221 23578999999999 599999999999999864
No 173
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=8.9e-20 Score=136.55 Aligned_cols=228 Identities=18% Similarity=0.338 Sum_probs=153.3
Q ss_pred eEEeec-C-cEEEEEccCCc-----cccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEecc------
Q 035558 7 LLATSS-D-FLRVWRISDED-----RRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE------ 73 (253)
Q Consensus 7 ~l~~~~-~-~v~iw~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~------ 73 (253)
.+++|+ | .|++|.+.... ...+....+..|. ..|+++.|+ +++++|++|+.+|.|.+|...
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~-----~aVN~vRf~-p~gelLASg~D~g~v~lWk~~~~~~~~ 101 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHT-----RAVNVVRFS-PDGELLASGGDGGEVFLWKQGDVRIFD 101 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCc-----ceeEEEEEc-CCcCeeeecCCCceEEEEEecCcCCcc
Confidence 788877 5 99999987641 2345667788888 899999999 899999999999999999876
Q ss_pred --C-----c---eeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCC
Q 035558 74 --R-----E---AVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDP 142 (253)
Q Consensus 74 --~-----~---~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 142 (253)
+ . .....+.+|...|..++|+ +++++++++.|..+++||+..++.... ...|...+.-++|.| -+
T Consensus 102 ~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~---~~dh~~yvqgvawDp-l~ 177 (434)
T KOG1009|consen 102 ADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAI---LDDHEHYVQGVAWDP-LN 177 (434)
T ss_pred ccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEee---ccccccccceeecch-hh
Confidence 2 1 1344567899999999999 999999999999999999998873322 233333444455554 44
Q ss_pred CEEEEEEeCCC---------------------------------------------------------------------
Q 035558 143 RYMATIIMDSA--------------------------------------------------------------------- 153 (253)
Q Consensus 143 ~~l~~~~~~~~--------------------------------------------------------------------- 153 (253)
+++++-+.|..
T Consensus 178 qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~ 257 (434)
T KOG1009|consen 178 QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGG 257 (434)
T ss_pred hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCc
Confidence 44444333332
Q ss_pred ----eEEEEECCCCCCCeeeecccccceeEEEEecC--------C---------CCeEEEecCCCcEEEEeccCCCCCCC
Q 035558 154 ----KVVVLDIRFPTLPVVELQRHQASVNAIAWAPH--------S---------SCHICTAGDDSQALIWDLSSMGQPVE 212 (253)
Q Consensus 154 ----~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~--------~---------~~~l~~~~~dg~i~iwd~~~~~~~~~ 212 (253)
..++|+-...+.|...+..-..+...+.|+|- . ...++.++ ...+.+||.+......
T Consensus 258 ~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~- 335 (434)
T KOG1009|consen 258 VFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLA- 335 (434)
T ss_pred eeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceE-
Confidence 12333333333344444444444555555441 0 01233333 3467777776644222
Q ss_pred CCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEE
Q 035558 213 GGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQIL 251 (253)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw 251 (253)
....-|-..|+.++|+++|..++..+.||...+.
T Consensus 336 -----~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~v 369 (434)
T KOG1009|consen 336 -----VVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLV 369 (434)
T ss_pred -----EEeeeeeeeecceeecCCCcEEEEeccCCceEEE
Confidence 3444588999999999999988888989876543
No 174
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3e-20 Score=144.28 Aligned_cols=219 Identities=15% Similarity=0.241 Sum_probs=164.4
Q ss_pred ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee-cccccEEEEEec---CCCeEEEEe
Q 035558 28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI-AHDKEVYDIAWG---GVGVFASVS 103 (253)
Q Consensus 28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~---~~~~l~~~~ 103 (253)
...+.+.||+ +.|+++.|+ .+|.+|++|+.|-.+.|||.-..+.+..+. +|...|.++.|- +++++++|.
T Consensus 41 ~lE~eL~GH~-----GCVN~LeWn-~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 41 DLEAELTGHT-----GCVNCLEWN-ADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred chhhhhcccc-----ceecceeec-CCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc
Confidence 4556788999 999999999 999999999999999999998888887775 899999999998 778999999
Q ss_pred CCCcEEEEEcCCCCC-------eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeee------
Q 035558 104 ADGSVRVFDLRDKEH-------STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVEL------ 170 (253)
Q Consensus 104 ~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~------ 170 (253)
.|..|+++|+...+. .........|...|..++-.|..+..+.+++.||. |+-||+|....+-...
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt-irQyDiREph~c~p~~~~~~~l 193 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT-IRQYDIREPHVCNPDEDCPSIL 193 (758)
T ss_pred CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc-eeeecccCCccCCccccccHHH
Confidence 999999999985331 11222233455577788888866799999999999 9999999855322221
Q ss_pred ---cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCC-----CCC-------eeeccCC--------C--
Q 035558 171 ---QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGG-----LDP-------ILAYTAG--------A-- 225 (253)
Q Consensus 171 ---~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~-------~~~~~~~--------~-- 225 (253)
...--...++..+|..+.+|++|+.|-..++||.+....+.... ..| ....+|. .
T Consensus 194 ~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~ 273 (758)
T KOG1310|consen 194 VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYI 273 (758)
T ss_pred HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccce
Confidence 12223567899999998999999999999999965433222100 001 1111221 1
Q ss_pred -ceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 226 -EIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 226 -~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
-++-+.|+|+|..++..-....|.+++|
T Consensus 274 ~~~t~vtfnpNGtElLvs~~gEhVYlfdv 302 (758)
T KOG1310|consen 274 TCCTYVTFNPNGTELLVSWGGEHVYLFDV 302 (758)
T ss_pred eeeEEEEECCCCcEEEEeeCCeEEEEEee
Confidence 2466889999998887766777888875
No 175
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.85 E-value=3.5e-19 Score=136.97 Aligned_cols=226 Identities=12% Similarity=0.187 Sum_probs=168.6
Q ss_pred CceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558 5 PDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI 82 (253)
Q Consensus 5 ~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 82 (253)
.+.+++++ + .+++|+ +. ++..+..-. .++.|+.|+ |.+ .++.|+..|...+.|.++...+..-.
T Consensus 380 ~~q~~T~gqdk~v~lW~-~~-----k~~wt~~~~------d~~~~~~fh-psg-~va~Gt~~G~w~V~d~e~~~lv~~~~ 445 (626)
T KOG2106|consen 380 KNQLLTCGQDKHVRLWN-DH-----KLEWTKIIE------DPAECADFH-PSG-VVAVGTATGRWFVLDTETQDLVTIHT 445 (626)
T ss_pred hhheeeccCcceEEEcc-CC-----ceeEEEEec------CceeEeecc-Ccc-eEEEeeccceEEEEecccceeEEEEe
Confidence 34555555 6 999999 33 444333222 578899999 667 89999999999999999866665444
Q ss_pred cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558 83 AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR 161 (253)
Q Consensus 83 ~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~ 161 (253)
. ..++++++|+ +|.+||.|+.|+.|++|.+............... .+|+.+.|++ +++++.+-+.|-. |..|...
T Consensus 446 d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g-s~ithLDwS~-Ds~~~~~~S~d~e-iLyW~~~ 521 (626)
T KOG2106|consen 446 D-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG-SPITHLDWSS-DSQFLVSNSGDYE-ILYWKPS 521 (626)
T ss_pred c-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC-ceeEEeeecC-CCceEEeccCceE-EEEEccc
Confidence 4 8899999999 9999999999999999999877644333332222 6999999999 9999999888877 9999443
Q ss_pred CCCC--Ceeee---------------cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCC
Q 035558 162 FPTL--PVVEL---------------QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAG 224 (253)
Q Consensus 162 ~~~~--~~~~~---------------~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 224 (253)
.-.+ +++.+ ..+...|+.++-+.+. .++++|...|+|++|...-.+.. .......+|+
T Consensus 522 ~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~-~~lA~gdd~g~v~lf~yPc~s~r----A~~he~~ghs 596 (626)
T KOG2106|consen 522 ECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCE-KLLASGDDFGKVHLFSYPCSSPR----APSHEYGGHS 596 (626)
T ss_pred cCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhh-hhhhccccCceEEEEccccCCCc----ccceeecccc
Confidence 2211 01111 1234455556666666 58999999999999987643321 1224667899
Q ss_pred CceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 225 AEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 225 ~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
+-|++++|.-..+.+++.+.|..|..|++
T Consensus 597 ~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 597 SHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred ceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 99999999999888999889999999986
No 176
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.5e-19 Score=127.22 Aligned_cols=201 Identities=14% Similarity=0.158 Sum_probs=144.7
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc----------eeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEE
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE----------AVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFD 112 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d 112 (253)
..|.+-+|+ |.+++|++|..+|.|.+..+.+. ..+-..++|.++|+.++|+ ..+|++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~s-p~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAIS-PSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhC-CcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-hhheeecc-CceEEEee
Confidence 356677888 78999999999999999988642 1344457899999999997 55677766 59999998
Q ss_pred cCCCCCe---eee-------eccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEE
Q 035558 113 LRDKEHS---TII-------YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAW 182 (253)
Q Consensus 113 ~~~~~~~---~~~-------~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~ 182 (253)
.+..... +.+ .......-.|++|...| ..+-++.++.|+. ++-||+++++. ..++++|+..|.++.-
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~~-~y~~dlE~G~i-~r~~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDGV-IYQVDLEDGRI-QREYRGHTDYVHSVVG 164 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCeE-EEEEEecCCEE-EEEEcCCcceeeeeee
Confidence 7654320 111 11011122689999999 5555555667888 99999999874 7899999999999998
Q ss_pred ecCCCCeEEEecCCCcEEEEeccCCCCCCCCC--CCCeeeccC-CCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 183 APHSSCHICTAGDDSQALIWDLSSMGQPVEGG--LDPILAYTA-GAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 183 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
-...+ .+++|++||++|+||+++.+...... ..+..+..| +..|-+++-+.+ ++.++....+.+|+|
T Consensus 165 R~~~~-qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed---WlvCGgGp~lslwhL 234 (325)
T KOG0649|consen 165 RNANG-QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED---WLVCGGGPKLSLWHL 234 (325)
T ss_pred cccCc-ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc---eEEecCCCceeEEec
Confidence 55443 79999999999999999988544211 222333333 455777776654 666677778888875
No 177
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1e-18 Score=127.48 Aligned_cols=238 Identities=12% Similarity=0.148 Sum_probs=168.7
Q ss_pred CCCCceEEeec-C-cEEEEEccCCcc---ccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce
Q 035558 2 CQKPDLLATSS-D-FLRVWRISDEDR---RVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA 76 (253)
Q Consensus 2 p~~~~~l~~~~-~-~v~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 76 (253)
|+-..++++.- + ++++|.+....+ ....+..-..|-...+...|..+-.. .++.+|++++.|..|.+|+++ |+
T Consensus 142 pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~lw~lk-Gq 219 (420)
T KOG2096|consen 142 PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKICLWDLK-GQ 219 (420)
T ss_pred CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEEEEecC-Cc
Confidence 55555555554 3 899998765311 11111111111122233667677766 788999999999999999999 88
Q ss_pred eeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCC-----CCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558 77 VDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDK-----EHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM 150 (253)
Q Consensus 77 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 150 (253)
.++.+......-+..+.+ +|+++++++.---|++|.+--. +.....+...+|...|..++|+| +...+++.+.
T Consensus 220 ~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSk 298 (420)
T KOG2096|consen 220 LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSK 298 (420)
T ss_pred eeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEEec
Confidence 888887767777788889 9999999999888999987432 23344556778999999999999 9999999999
Q ss_pred CCCeEEEEECCCCC----CC--eeee----cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeee
Q 035558 151 DSAKVVVLDIRFPT----LP--VVEL----QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILA 220 (253)
Q Consensus 151 ~~~~i~~~d~~~~~----~~--~~~~----~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 220 (253)
||. +++||+.-.. .| ++.. ..-.+....++.+|+| +.|+.+ ....+++|..+.++.. +...
T Consensus 299 DG~-wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g-~~lA~s-~gs~l~~~~se~g~~~------~~~e 369 (420)
T KOG2096|consen 299 DGK-WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG-DSLAVS-FGSDLKVFASEDGKDY------PELE 369 (420)
T ss_pred CCc-EEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC-cEEEee-cCCceEEEEcccCccc------hhHH
Confidence 999 9999985321 11 1211 1112334489999999 455544 4568999999987643 2456
Q ss_pred ccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 221 YTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 221 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
..|...|.+++|+++|++ ++.+.|..++++.
T Consensus 370 ~~h~~~Is~is~~~~g~~-~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 370 DIHSTTISSISYSSDGKY-IATCGDRYVRVIR 400 (420)
T ss_pred HhhcCceeeEEecCCCcE-Eeeecceeeeeec
Confidence 679999999999999985 4555577777764
No 178
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.84 E-value=3.3e-19 Score=126.73 Aligned_cols=228 Identities=14% Similarity=0.187 Sum_probs=164.2
Q ss_pred ceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee-----
Q 035558 6 DLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD----- 78 (253)
Q Consensus 6 ~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~----- 78 (253)
++|.+|.. .|++|++.+. +....++.+.. ..|+.+.-- ++ ..+.+-+.|+.+.+|++.-+..+
T Consensus 26 ~rL~sg~~~G~V~~w~lqt~----r~~~~~r~~g~----~~it~lq~~-p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si 95 (323)
T KOG0322|consen 26 ERLMSGLSVGIVKMWVLQTE----RDLPLIRLFGR----LFITNLQSI-PN-DSLDTQGRDPLLILWTIAYSAFISIHSI 95 (323)
T ss_pred hhhhcccccceEEEEEeecC----ccchhhhhhcc----ceeeceeec-CC-cchhhcCCCceEEEEEccCcceEEEeee
Confidence 34556654 9999999997 66777774432 678888876 44 56778889999999998652100
Q ss_pred --------------------eee----------------------------ecccccEEEEEec--CCC--eEEEEeCCC
Q 035558 79 --------------------TQL----------------------------IAHDKEVYDIAWG--GVG--VFASVSADG 106 (253)
Q Consensus 79 --------------------~~~----------------------------~~~~~~v~~~~~~--~~~--~l~~~~~dg 106 (253)
+.+ .+..+.+.+..+. ++. +++.|-++|
T Consensus 96 ~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsg 175 (323)
T KOG0322|consen 96 VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESG 175 (323)
T ss_pred eccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCC
Confidence 000 0112345555554 333 567788899
Q ss_pred cEEEEEcCCCCCe-------eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC--CCe-eeecccccc
Q 035558 107 SVRVFDLRDKEHS-------TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT--LPV-VELQRHQAS 176 (253)
Q Consensus 107 ~i~i~d~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~--~~~-~~~~~~~~~ 176 (253)
.+.+||+.++... +.......++.++.++.+.+ .-+.=++++.+.. +..|.+.... .++ .++......
T Consensus 176 hvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dk-l~~~Sl~~s~gslq~~~e~~lknpG 253 (323)
T KOG0322|consen 176 HVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDK-LVMYSLNHSTGSLQIRKEITLKNPG 253 (323)
T ss_pred eEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCcccc-ceeeeeccccCcccccceEEecCCC
Confidence 9999999987422 23334456778999999987 4445566666776 8888876542 111 122223456
Q ss_pred eeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 177 VNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 177 i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
+..+..-||+ +.++|++.|++||||..++..... .+.-|...|++++|+|+.+.+++++.|.+|.+|+|
T Consensus 254 v~gvrIRpD~-KIlATAGWD~RiRVyswrtl~pLA-------VLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 254 VSGVRIRPDG-KILATAGWDHRIRVYSWRTLNPLA-------VLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ccceEEccCC-cEEeecccCCcEEEEEeccCCchh-------hhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 8889999999 799999999999999999987554 77789999999999999888889999999999986
No 179
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=7.3e-19 Score=133.73 Aligned_cols=198 Identities=12% Similarity=0.163 Sum_probs=156.6
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc--eeeeeeecccccEEEEEec-CCC-eEEEEeCCCcEEEEEcCCCCC
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE--AVDTQLIAHDKEVYDIAWG-GVG-VFASVSADGSVRVFDLRDKEH 118 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~ 118 (253)
+.|+++.|+ |....+++++.|+++++|.+... ..++.+.-...+|.+.+|. +|. .+++++....++.||+.+.+.
T Consensus 214 ~~I~sv~FH-p~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 214 GGITSVQFH-PTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred CCceEEEec-CCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 789999999 88999999999999999988643 3566666667899999999 777 899999999999999998874
Q ss_pred eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCc
Q 035558 119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQ 198 (253)
Q Consensus 119 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 198 (253)
.+.-......+..+..+..+| ++++|+..+..|. |++....+... +..++ ..+.|..++|+.++ +.|++++.+|.
T Consensus 293 ~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~-I~lLhakT~el-i~s~K-ieG~v~~~~fsSds-k~l~~~~~~Ge 367 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGH-IHLLHAKTKEL-ITSFK-IEGVVSDFTFSSDS-KELLASGGTGE 367 (514)
T ss_pred ccccCCCCcccchhheeEecC-CCCeEEEcccCce-EEeehhhhhhh-hheee-eccEEeeEEEecCC-cEEEEEcCCce
Confidence 433332222234677788899 8999999999998 99998887653 55555 36789999999999 68888888999
Q ss_pred EEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 199 ALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 199 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
|.+||++...... .......-.-++++.++++.++++++..|.|.||+
T Consensus 368 V~v~nl~~~~~~~------rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 368 VYVWNLRQNSCLH------RFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred EEEEecCCcceEE------EEeecCccceeeeeecCCCceEEeccCcceEEEec
Confidence 9999999875432 12222233446778889999888888889898886
No 180
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.8e-19 Score=134.93 Aligned_cols=206 Identities=12% Similarity=0.163 Sum_probs=156.7
Q ss_pred eeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc------eeeeeee-cccccEEEEEec-CCCeEE
Q 035558 29 LKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE------AVDTQLI-AHDKEVYDIAWG-GVGVFA 100 (253)
Q Consensus 29 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~------~~~~~~~-~~~~~v~~~~~~-~~~~l~ 100 (253)
+.+.+.+|. +.|.++.|+ .++++|++|+.|..+++|+++.. +++.... .|...|.+++|. .+.++.
T Consensus 48 ~qKD~~~H~-----GCiNAlqFS-~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~ 121 (609)
T KOG4227|consen 48 CQKDVREHT-----GCINALQFS-HNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLY 121 (609)
T ss_pred hhhhhhhhc-----cccceeeec-cCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEe
Confidence 344566777 999999999 88999999999999999998643 3444333 356899999999 899999
Q ss_pred EEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeee--eccccccee
Q 035558 101 SVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE--LQRHQASVN 178 (253)
Q Consensus 101 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~~i~ 178 (253)
+|..+++|.+.|+++.+.+.+.. .....+.|+.+..+| ..+.+++.+.++. |.+||.+....+... .........
T Consensus 122 SG~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P-~DN~~~~~t~~~~-V~~~D~Rd~~~~~~~~~~AN~~~~F~ 198 (609)
T KOG4227|consen 122 SGERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHP-TDNTLIVVTRAKL-VSFIDNRDRQNPISLVLPANSGKNFY 198 (609)
T ss_pred cCCCcceeEeeecccceeeeeec-ccCcccceeecccCC-CCceEEEEecCce-EEEEeccCCCCCCceeeecCCCccce
Confidence 99999999999999987544332 234456899999999 6889999999998 999999986644332 233455788
Q ss_pred EEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEE
Q 035558 179 AIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA 243 (253)
Q Consensus 179 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 243 (253)
++.|+|..+.+|++.+..+-+.+||++....+.........+......-.++.|+|.|..+++.-
T Consensus 199 t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR 263 (609)
T KOG4227|consen 199 TAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR 263 (609)
T ss_pred eeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh
Confidence 99999999889999999999999999988765521111112222233346778999888777643
No 181
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.2e-19 Score=142.09 Aligned_cols=201 Identities=11% Similarity=0.188 Sum_probs=161.1
Q ss_pred CCeeEEEecCCCCCEEEEEeCC---CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCC
Q 035558 43 GPLTSFDWNEAEPRRIGTSSID---TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEH 118 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~ 118 (253)
.+|..+.|+ ..|.+|++..-+ ..|.|+++...+....|+-..+.|.++.|+ ...+|+.++. ..|++||+.....
T Consensus 522 k~i~~vtWH-rkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqel 599 (733)
T KOG0650|consen 522 KSIRQVTWH-RKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQEL 599 (733)
T ss_pred Cccceeeee-cCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHH
Confidence 789999999 899999988654 478899998777666676677889999999 6666666654 5799999987653
Q ss_pred eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCc
Q 035558 119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQ 198 (253)
Q Consensus 119 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 198 (253)
.+.+.. ....|..++.+| .|..|+.++.++. +..+|+.-..++.+.+..|...+++++|++.-+ ++++|+.||+
T Consensus 600 vKkL~t---g~kwiS~msihp-~GDnli~gs~d~k-~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgt 673 (733)
T KOG0650|consen 600 VKKLLT---GSKWISSMSIHP-NGDNLILGSYDKK-MCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGT 673 (733)
T ss_pred HHHHhc---CCeeeeeeeecC-CCCeEEEecCCCe-eEEEEcccCcchhHHhhhhhhhhhhhhhccccc-eeeeecCCCc
Confidence 333322 223899999999 8999999999999 999999988889999999999999999999985 9999999999
Q ss_pred EEEEeccCCCCCCC--CCCCCeeeccCCCc----eeEEEEcCCCCceEEEEcCCcEEEE
Q 035558 199 ALIWDLSSMGQPVE--GGLDPILAYTAGAE----IEQLQWSSSQPDWVAIAFSTKLQIL 251 (253)
Q Consensus 199 i~iwd~~~~~~~~~--~~~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~i~vw 251 (253)
+.||.-.-...... .......+.+|... |..+.|||..+.+++++.|+.|++|
T Consensus 674 v~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 674 VIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 99996543322110 01122455677554 8999999999999999999999998
No 182
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=3.7e-18 Score=141.71 Aligned_cols=232 Identities=16% Similarity=0.194 Sum_probs=163.9
Q ss_pred eEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEec-CCCCCEEEEEeCCCeEEEEeccC-----ceee
Q 035558 7 LLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWN-EAEPRRIGTSSIDTTCTIWDIER-----EAVD 78 (253)
Q Consensus 7 ~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~vwd~~~-----~~~~ 78 (253)
.++++. . .|++||.+.+ +....+..+.. ....|+.+.+- ..+..++++|+.||.|+||+--. .+.+
T Consensus 1078 ~i~~ad~r~~i~vwd~e~~----~~l~~F~n~~~--~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLV 1151 (1387)
T KOG1517|consen 1078 QIAAADDRERIRVWDWEKG----RLLNGFDNGAF--PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELV 1151 (1387)
T ss_pred eeEEcCCcceEEEEecccC----ceeccccCCCC--CCCccceeeeecccchhheeeeccCceEEEecccccccCCceeE
Confidence 345555 4 9999999987 66555554431 11578888874 24567899999999999997432 2333
Q ss_pred eeeec-------ccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558 79 TQLIA-------HDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM 150 (253)
Q Consensus 79 ~~~~~-------~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 150 (253)
..+.+ ..+.=.-+.|. ...+|++++.-..|+|||........-+ ..+.+..++++.-+...++.+++|-.
T Consensus 1152 Taw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~di--P~~s~t~vTaLS~~~~~gn~i~AGfa 1229 (1387)
T KOG1517|consen 1152 TAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADI--PYGSSTLVTALSADLVHGNIIAAGFA 1229 (1387)
T ss_pred EeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeec--ccCCCccceeecccccCCceEEEeec
Confidence 33321 11111345677 6666777777889999999987643322 23445578888776657899999999
Q ss_pred CCCeEEEEECCCCCC--Ceeeecccccc--eeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC---
Q 035558 151 DSAKVVVLDIRFPTL--PVVELQRHQAS--VNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA--- 223 (253)
Q Consensus 151 ~~~~i~~~d~~~~~~--~~~~~~~~~~~--i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--- 223 (253)
||. |++||.|.... .+...+.|+.. |..+.+.+.|-..|++|+.||.|++||++...... ......|
T Consensus 1230 DGs-vRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~-----~~~iv~~~~y 1303 (1387)
T KOG1517|consen 1230 DGS-VRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET-----FLTIVAHWEY 1303 (1387)
T ss_pred CCc-eEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc-----cceeeecccc
Confidence 999 99999997653 56777888887 99999999885569999999999999999852211 1122222
Q ss_pred CCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 224 GAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 224 ~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
++..+++..|+..+ ++|+|..+.++||++
T Consensus 1304 Gs~lTal~VH~hap-iiAsGs~q~ikIy~~ 1332 (1387)
T KOG1517|consen 1304 GSALTALTVHEHAP-IIASGSAQLIKIYSL 1332 (1387)
T ss_pred CccceeeeeccCCC-eeeecCcceEEEEec
Confidence 34699999999987 555555599999975
No 183
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.5e-18 Score=144.00 Aligned_cols=244 Identities=19% Similarity=0.264 Sum_probs=167.8
Q ss_pred CCCceEEeec-C-cEEEEEccCCc-cccceeeeec---CCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce
Q 035558 3 QKPDLLATSS-D-FLRVWRISDED-RRVELKSLLN---GNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA 76 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~-~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 76 (253)
++..++.+++ | .||||+-.... +..+.+.... ++........ .-+.|...+|.++ +++.-..|+|||.....
T Consensus 1121 ~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~-~v~dWqQ~~G~Ll-~tGd~r~IRIWDa~~E~ 1198 (1387)
T KOG1517|consen 1121 QDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTG-LVVDWQQQSGHLL-VTGDVRSIRIWDAHKEQ 1198 (1387)
T ss_pred cchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCC-eeeehhhhCCeEE-ecCCeeEEEEEecccce
Confidence 3445666666 5 99999864431 2334443333 3321111122 3467884445544 44557899999999888
Q ss_pred eeeeee-cccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCC--eeEEEeeCCCCCEEEEEEeC
Q 035558 77 VDTQLI-AHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTP--LVRLGWNKQDPRYMATIIMD 151 (253)
Q Consensus 77 ~~~~~~-~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~l~~~~~~ 151 (253)
....+. +....|+++.-+ .++.+++|..||.|++||.+.......+.....|... |..+.+.+..-..+++|+.+
T Consensus 1199 ~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~ 1278 (1387)
T KOG1517|consen 1199 VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD 1278 (1387)
T ss_pred eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccC
Confidence 777665 455678888877 7899999999999999999987653344333344434 99999998333469999999
Q ss_pred CCeEEEEECCCC-CCCeeeecccc--c-ceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCce
Q 035558 152 SAKVVVLDIRFP-TLPVVELQRHQ--A-SVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEI 227 (253)
Q Consensus 152 ~~~i~~~d~~~~-~~~~~~~~~~~--~-~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v 227 (253)
|. |++||+|.. .+....+..|. + ..+++..+++.+ .+++|+. +.|+||++....... ....+.........+
T Consensus 1279 G~-I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~-~k~n~~F~~q~~gs~ 1354 (1387)
T KOG1517|consen 1279 GD-IQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNI-IKYNPGFMGQRIGSV 1354 (1387)
T ss_pred Ce-EEEEecccCcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhcc-cccCcccccCcCCCc
Confidence 99 999999984 33233344333 3 589999999985 8999988 999999997654221 112233333445677
Q ss_pred eEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 228 EQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
.+++|||....+++++.|+.|.||.
T Consensus 1355 scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1355 SCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred ceeeecchhHhhhhccCCceEEEee
Confidence 9999999987777888899999885
No 184
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=1.3e-19 Score=143.14 Aligned_cols=200 Identities=21% Similarity=0.386 Sum_probs=153.9
Q ss_pred CCCCCceEEeecC--cEEEEEccCC---ccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc
Q 035558 1 ECQKPDLLATSSD--FLRVWRISDE---DRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE 75 (253)
Q Consensus 1 sp~~~~~l~~~~~--~v~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 75 (253)
+|-+.+.||+++| .|++|.+..+ +....+...+.+|. ..|+++.|+|-..+.|++++.|-+|++||+.++
T Consensus 636 dPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~-----eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~ 710 (1012)
T KOG1445|consen 636 DPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHG-----EKITSLRFHPLAADVLAVASYDSTIELWDLANA 710 (1012)
T ss_pred CCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeeccc-----ceEEEEEecchhhhHhhhhhccceeeeeehhhh
Confidence 4778888888886 9999999764 23356677888998 899999999888899999999999999999999
Q ss_pred eeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCC-CCeeEEEeeCCCCCEEEEEEeCCC
Q 035558 76 AVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPD-TPLVRLGWNKQDPRYMATIIMDSA 153 (253)
Q Consensus 76 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~~~~ 153 (253)
+....+.+|++.|.+++|+ +|+.+++.+.||+|++|+-++... .+++..+.. ..-..+.|.- ++.++++.+.|..
T Consensus 711 ~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~--pv~Eg~gpvgtRgARi~wac-dgr~viv~Gfdk~ 787 (1012)
T KOG1445|consen 711 KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ--PVYEGKGPVGTRGARILWAC-DGRIVIVVGFDKS 787 (1012)
T ss_pred hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC--ccccCCCCccCcceeEEEEe-cCcEEEEeccccc
Confidence 9999999999999999999 999999999999999999998763 333332221 2445567777 8899988887653
Q ss_pred ---eEEEEECCCCC-CCeeeecccc-cceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558 154 ---KVVVLDIRFPT-LPVVELQRHQ-ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 154 ---~i~~~d~~~~~-~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
.|.+||..+.. .++....-.. ..+.--.+.+|...+|++|-.|..|.+|.+-..+
T Consensus 788 SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 788 SERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred chhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence 47888877644 2333222111 1122234566765678899999999999987644
No 185
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.83 E-value=3.9e-20 Score=149.82 Aligned_cols=225 Identities=20% Similarity=0.306 Sum_probs=168.0
Q ss_pred CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
..|.++++|+| .|+||..++. .+...++||. +.|+.++.+ .+..++++++.|..|++|.+.++.++..
T Consensus 200 rtg~~Iitgsdd~lvKiwS~et~----~~lAs~rGhs-----~ditdlavs-~~n~~iaaaS~D~vIrvWrl~~~~pvsv 269 (1113)
T KOG0644|consen 200 RTGRYIITGSDDRLVKIWSMETA----RCLASCRGHS-----GDITDLAVS-SNNTMIAAASNDKVIRVWRLPDGAPVSV 269 (1113)
T ss_pred cccceEeecCccceeeeeeccch----hhhccCCCCc-----cccchhccc-hhhhhhhhcccCceEEEEecCCCchHHH
Confidence 35789999997 9999999887 8999999999 899999998 8888999999999999999999999999
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeee---------------eec------------cCCCCCCe
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTI---------------IYE------------SSEPDTPL 132 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~---------------~~~------------~~~~~~~i 132 (253)
+++|++.|++++|+ -. +.+.||++++||.+-.-.... +.. .....-..
T Consensus 270 LrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~ 345 (1113)
T KOG0644|consen 270 LRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEF 345 (1113)
T ss_pred HhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchh
Confidence 99999999999998 32 778999999999981110000 000 00000112
Q ss_pred eEEEeeCCCCCEEEEEE-----------eCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEE
Q 035558 133 VRLGWNKQDPRYMATII-----------MDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALI 201 (253)
Q Consensus 133 ~~~~~~~~~~~~l~~~~-----------~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i 201 (253)
-+++|.. ....+++.+ .+-. +++|++.++.. .+.+.+|...+..+.++|.+++...+++.||...|
T Consensus 346 ~~l~~~~-~~lif~t~ssd~~~~~~~ar~~~~-~~vwnl~~g~l-~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~i 422 (1113)
T KOG0644|consen 346 EQLAWRS-NLLIFVTRSSDLSSIVVTARNDHR-LCVWNLYTGQL-LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTII 422 (1113)
T ss_pred hHhhhhc-cceEEEeccccccccceeeeeeeE-eeeeecccchh-hhhhcccccceeeeeecCCCcHhhhhccCCCceEe
Confidence 2233332 222222222 2333 78888888764 77888899999999999999877789999999999
Q ss_pred EeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEE
Q 035558 202 WDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQIL 251 (253)
Q Consensus 202 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw 251 (253)
||+..+.... ....+ ...+..-+|+++|+.++....-|.+.|+
T Consensus 423 wdi~eg~pik------~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 423 WDIWEGIPIK------HYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred eecccCCcce------eeecc-cceeeccccCCCCceEecCCCCCceEEe
Confidence 9998876443 23344 4566678899999877666666666664
No 186
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=5.3e-17 Score=130.41 Aligned_cols=219 Identities=20% Similarity=0.340 Sum_probs=167.5
Q ss_pred cEEEEEccC-CccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC-CCeEEEEeccCceeeeeeecccccEEEE
Q 035558 14 FLRVWRISD-EDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI-DTTCTIWDIEREAVDTQLIAHDKEVYDI 91 (253)
Q Consensus 14 ~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 91 (253)
.+++|+... . .....+..|. ..|..++|+ +++..+++++. |+.+++|+...+..+..+.+|...|.++
T Consensus 135 ~~~~~~~~~~~----~~~~~~~~~~-----~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 204 (466)
T COG2319 135 TVKLWDLSTPG----KLIRTLEGHS-----ESVTSLAFS-PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL 204 (466)
T ss_pred cEEEEEecCCC----eEEEEEecCc-----ccEEEEEEC-CCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEE
Confidence 999999987 4 6778888898 889999999 77878888885 9999999999888888888899999999
Q ss_pred Eec-CCC-eEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeee
Q 035558 92 AWG-GVG-VFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE 169 (253)
Q Consensus 92 ~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~ 169 (253)
+|+ ++. .+++++.|+.|++||...+..... ....+.... ...|+| ++.++++++.++. +++|+++........
T Consensus 205 ~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~-~~~~~~~~~~~~~~~ 279 (466)
T COG2319 205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS--TLSGHSDSV-VSSFSP-DGSLLASGSSDGT-IRLWDLRSSSSLLRT 279 (466)
T ss_pred EEcCCcceEEEEecCCCcEEEEECCCCcEEee--ecCCCCcce-eEeECC-CCCEEEEecCCCc-EEEeeecCCCcEEEE
Confidence 999 776 555669999999998885553221 233333333 227888 6688888999998 999999876643444
Q ss_pred ecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE-EcCCcE
Q 035558 170 LQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI-AFSTKL 248 (253)
Q Consensus 170 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~i 248 (253)
+..|...+.++.|.|++ ..+++++.|+.+.+|+........ ......|...+..+.|.+++..++.+ ..++.+
T Consensus 280 ~~~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 353 (466)
T COG2319 280 LSGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGKLLS-----SLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTI 353 (466)
T ss_pred EecCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCCceEE-----EeeecccCCceEEEEECCCCCEEEEeecCCCcE
Confidence 46788899999999977 477778888999999888776443 01124677789999994332344444 577788
Q ss_pred EEEEC
Q 035558 249 QILRV 253 (253)
Q Consensus 249 ~vw~l 253 (253)
.+|++
T Consensus 354 ~~~~~ 358 (466)
T COG2319 354 RLWDL 358 (466)
T ss_pred Eeeec
Confidence 88764
No 187
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.82 E-value=2.3e-18 Score=125.58 Aligned_cols=206 Identities=14% Similarity=0.207 Sum_probs=160.2
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---eeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCC
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---VDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEH 118 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~ 118 (253)
.+|+|.+|+ ++...+|.+..+..|.||.....+ ..++++.|...|+.+.|. ..+.|++|+.|..-++|....+..
T Consensus 11 ~pitchAwn-~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 11 EPITCHAWN-SDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred Cceeeeeec-CCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 789999999 999999999999999999887654 677888999999999999 999999999999999999965544
Q ss_pred eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC---CeeeecccccceeEEEEecCCCCeEEEecC
Q 035558 119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL---PVVELQRHQASVNAIAWAPHSSCHICTAGD 195 (253)
Q Consensus 119 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 195 (253)
.+.......++...+++.|+| .++.||+|+.... |.+|-++.... ..+.-+.+...|++++|+|++ -+|++|+.
T Consensus 90 WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~-isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn-VLlaaGs~ 166 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSP-KENKFAVGSGARL-ISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN-VLLAAGST 166 (361)
T ss_pred eccceeEEEeccceeeEeecC-cCceEEeccCccE-EEEEEEecccceehhhhhCCccccceeeeeccCCc-ceeccccc
Confidence 444444445666899999999 9999999988776 88888765431 123344567889999999998 59999999
Q ss_pred CCcEEEEeccCCC---CCCCCCCC--------CeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 196 DSQALIWDLSSMG---QPVEGGLD--------PILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 196 dg~i~iwd~~~~~---~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
|+..+||..--.. +|...... ........+.+.++.|+|+|..+.-.+.|..+.+-+
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVD 234 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence 9999999753221 11100000 111224578899999999999888888888876643
No 188
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=3.1e-19 Score=133.71 Aligned_cols=195 Identities=17% Similarity=0.259 Sum_probs=150.2
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---------eeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEE
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---------VDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFD 112 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d 112 (253)
.+|.++.|.+...+.+++|+.|..|++|.++.+. ....+..|...|+.+.|+ ++++|++|+.+|.|.+|-
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 6899999995455599999999999999887543 344566899999999999 999999999999999997
Q ss_pred cC--------C-----CCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeE
Q 035558 113 LR--------D-----KEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNA 179 (253)
Q Consensus 113 ~~--------~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~ 179 (253)
.. + .+..........|...|+.++|+| +++++++++.|+. +++||+..+.. ...+..|...+..
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns-~~l~Dv~~G~l-~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNS-VRLWDVHAGQL-LAILDDHEHYVQG 170 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccce-EEEEEecccee-Eeeccccccccce
Confidence 76 2 112233334455777999999999 9999999999998 99999999775 7888899999999
Q ss_pred EEEecCCCCeEEEecCCCcEEEEeccCCCCCC------------CCCCCCeeeccC----CCceeEEEEcCCCCceEE
Q 035558 180 IAWAPHSSCHICTAGDDSQALIWDLSSMGQPV------------EGGLDPILAYTA----GAEIEQLQWSSSQPDWVA 241 (253)
Q Consensus 180 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------------~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~ 241 (253)
++|.|-+ +++++-+.|...+.+++....... .+.+......-| ..-...++|+|+|..+++
T Consensus 171 vawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvt 247 (434)
T KOG1009|consen 171 VAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVT 247 (434)
T ss_pred eecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEc
Confidence 9999998 799999999888887776543211 000111111112 234567899999986663
No 189
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.82 E-value=5.6e-20 Score=139.92 Aligned_cols=219 Identities=16% Similarity=0.125 Sum_probs=177.4
Q ss_pred CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
.+|+.|+.++. .|-.+|..+. ++...+... ..|.++.|- .+.+++|++ ....++|||-. |..++.
T Consensus 139 rnGrhlllgGrKGHlAa~Dw~t~----~L~~Ei~v~------Etv~Dv~~L-Hneq~~AVA-QK~y~yvYD~~-GtElHC 205 (545)
T KOG1272|consen 139 RNGRHLLLGGRKGHLAAFDWVTK----KLHFEINVM------ETVRDVTFL-HNEQFFAVA-QKKYVYVYDNN-GTELHC 205 (545)
T ss_pred CCccEEEecCCccceeeeecccc----eeeeeeehh------hhhhhhhhh-cchHHHHhh-hhceEEEecCC-CcEEee
Confidence 36777777764 9999999986 777666665 478999998 788888776 56789999986 666777
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
++.| ..|..+.|. ..-+|++++..|.++.-|+.+++.+..+. ...+.+..|+-+| -...+-+|...|. |.+|.
T Consensus 206 lk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~---t~~G~~~vm~qNP-~NaVih~GhsnGt-VSlWS 279 (545)
T KOG1272|consen 206 LKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR---TGAGRTDVMKQNP-YNAVIHLGHSNGT-VSLWS 279 (545)
T ss_pred hhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHH---ccCCccchhhcCC-ccceEEEcCCCce-EEecC
Confidence 7754 578889999 77789999999999999999998544443 3344788888899 6777888888887 99999
Q ss_pred CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558 160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW 239 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 239 (253)
... ++|+..+..|.++|.++++.++| +|++|.+.|..++|||++...++. .... ..+...+++|..| +
T Consensus 280 P~s-kePLvKiLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~~ql~-------t~~t-p~~a~~ls~Sqkg--l 347 (545)
T KOG1272|consen 280 PNS-KEPLVKILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRNFYQLH-------TYRT-PHPASNLSLSQKG--L 347 (545)
T ss_pred CCC-cchHHHHHhcCCCcceEEECCCC-cEEeecccccceeEeeeccccccc-------eeec-CCCcccccccccc--c
Confidence 887 45788899999999999999999 799999999999999999987554 3332 4567788888765 7
Q ss_pred EEEEcCCcEEEEE
Q 035558 240 VAIAFSTKLQILR 252 (253)
Q Consensus 240 ~~~~~~~~i~vw~ 252 (253)
+|++....+.||.
T Consensus 348 LA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 348 LALSYGDHVQIWK 360 (545)
T ss_pred eeeecCCeeeeeh
Confidence 8899999999995
No 190
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=9.1e-17 Score=129.03 Aligned_cols=227 Identities=20% Similarity=0.356 Sum_probs=172.2
Q ss_pred CCceEEeec-C-cEEEEEccCCccccc-eeeeecCCCCccccCCeeEEEe-cCCCCC-EEEEEeC-CCeEEEEeccC-ce
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVE-LKSLLNGNKNSEYCGPLTSFDW-NEAEPR-RIGTSSI-DTTCTIWDIER-EA 76 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~-~~~~~~-~l~~~~~-dg~i~vwd~~~-~~ 76 (253)
.+..++.++ + .+.+|+.... . ....+..+.. ..+..+.+ + +++. .++..+. |+.+.+|+... ..
T Consensus 76 ~~~~~~~~~~d~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~ 146 (466)
T COG2319 76 DGELLLSGSSDGTIKLWDLDNG----EKLIKSLEGLHD----SSVSKLALSS-PDGNSILLASSSLDGTVKLWDLSTPGK 146 (466)
T ss_pred CCcEEEEecCCCcEEEEEcCCC----ceeEEEEeccCC----CceeeEEEEC-CCcceEEeccCCCCccEEEEEecCCCe
Confidence 445555555 6 9999999885 3 5566665431 25666666 6 5565 5555444 89999999998 77
Q ss_pred eeeeeecccccEEEEEec-CCCeEEEEeC-CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCC-EEEEEEeCCC
Q 035558 77 VDTQLIAHDKEVYDIAWG-GVGVFASVSA-DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPR-YMATIIMDSA 153 (253)
Q Consensus 77 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~~~~ 153 (253)
....+..|...|..++|+ ++..+++++. |+.+++|++........+ ..+...+.+++|+| ++. .+++++.++.
T Consensus 147 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~-~~~~~~~~~~~d~~ 222 (466)
T COG2319 147 LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL---AGHTDPVSSLAFSP-DGGLLIASGSSDGT 222 (466)
T ss_pred EEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEee---ccCCCceEEEEEcC-CcceEEEEecCCCc
Confidence 788888999999999999 8878888885 999999999985533333 34677999999998 676 5555577887
Q ss_pred eEEEEECCCCCCCee-eecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEE
Q 035558 154 KVVVLDIRFPTLPVV-ELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQW 232 (253)
Q Consensus 154 ~i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 232 (253)
|++||.+.... .. .+..|.... ...|+|++ .++++++.|+.+++|++....... .....|...+.++.|
T Consensus 223 -i~~wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~ 292 (466)
T COG2319 223 -IRLWDLSTGKL-LRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLL------RTLSGHSSSVLSVAF 292 (466)
T ss_pred -EEEEECCCCcE-EeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEE------EEEecCCccEEEEEE
Confidence 99998885442 44 577787775 44899998 688899999999999999876521 122678999999999
Q ss_pred cCCCCceEEEEcCCcEEEEEC
Q 035558 233 SSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 233 ~~~~~~~~~~~~~~~i~vw~l 253 (253)
+|++..+++++.|+.+++|++
T Consensus 293 ~~~~~~~~~~~~d~~~~~~~~ 313 (466)
T COG2319 293 SPDGKLLASGSSDGTVRLWDL 313 (466)
T ss_pred CCCCCEEEEeeCCCcEEEEEc
Confidence 998887888888888899863
No 191
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.81 E-value=2.3e-16 Score=117.25 Aligned_cols=175 Identities=16% Similarity=0.224 Sum_probs=136.0
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec---ccccEEE
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA---HDKEVYD 90 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~ 90 (253)
.+++.++... ..+..+.-. .+|.++.++ .++|++.-.+ .|+|||+++.++++++.. +...+.+
T Consensus 69 ~Lkv~~~Kk~----~~ICe~~fp------t~IL~VrmN---r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~A 134 (391)
T KOG2110|consen 69 KLKVVHFKKK----TTICEIFFP------TSILAVRMN---RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCA 134 (391)
T ss_pred eEEEEEcccC----ceEEEEecC------CceEEEEEc---cceEEEEEcc-cEEEEecccceeehhhhccCCCccceEe
Confidence 5777777654 333333322 579999987 5667776655 499999999998887753 4556777
Q ss_pred EEec-CCCeEEEEe--CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCe
Q 035558 91 IAWG-GVGVFASVS--ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPV 167 (253)
Q Consensus 91 ~~~~-~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~ 167 (253)
++.+ .+.+++.-+ ..|.|.+||..+-+....+ ..|++.+.+++|++ +|.+||+++..|+.|+|+.+.++++ +
T Consensus 135 lS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I---~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~k-l 209 (391)
T KOG2110|consen 135 LSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTI---NAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQK-L 209 (391)
T ss_pred eccCCCCceEEecCCCCCceEEEEEcccceeeeEE---EecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccE-e
Confidence 7777 667777533 4688999999988744444 47888999999999 9999999999999999999988775 7
Q ss_pred eeeccc--ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558 168 VELQRH--QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 168 ~~~~~~--~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
.+++.. ...|.+++|+|++ ++|++.|..++|.+|.+....
T Consensus 210 ~eFRRG~~~~~IySL~Fs~ds-~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 210 YEFRRGTYPVSIYSLSFSPDS-QFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eeeeCCceeeEEEEEEECCCC-CeEEEecCCCeEEEEEecccc
Confidence 777643 3468999999999 699999999999999987654
No 192
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.3e-17 Score=134.49 Aligned_cols=230 Identities=14% Similarity=0.213 Sum_probs=166.3
Q ss_pred CCCceEEeecCcEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCC--CEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEP--RRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
+...+++..++.|.||...++ .++..+.+|. .+++.+.+.|... .++.+++.||.|++||...+.++.+
T Consensus 27 D~k~l~~~~~~~V~VyS~~Tg----~~i~~l~~~~-----a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt 97 (792)
T KOG1963|consen 27 DAKFLFLCTGNFVKVYSTATG----ECITSLEDHT-----APLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKT 97 (792)
T ss_pred CCcEEEEeeCCEEEEEecchH----hhhhhccccc-----CccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEE
Confidence 344444444459999999998 8888999999 8999999986554 5677999999999999998876655
Q ss_pred eecccccEEEE-----------------------------------------------------------EecCCCeEEE
Q 035558 81 LIAHDKEVYDI-----------------------------------------------------------AWGGVGVFAS 101 (253)
Q Consensus 81 ~~~~~~~v~~~-----------------------------------------------------------~~~~~~~l~~ 101 (253)
+..+ .++.++ .++....+..
T Consensus 98 ~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~ 176 (792)
T KOG1963|consen 98 FDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKG 176 (792)
T ss_pred EecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEE
Confidence 4321 111111 1110111112
Q ss_pred EeCCCcEEEEEcCCCCCeeee-eccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCC---CCCCeeeecccccce
Q 035558 102 VSADGSVRVFDLRDKEHSTII-YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF---PTLPVVELQRHQASV 177 (253)
Q Consensus 102 ~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~---~~~~~~~~~~~~~~i 177 (253)
...+..+.+|+..+....... .....|.-.+++.+++| +++++|++..||+ |.+|.--. .......+.-|...|
T Consensus 177 i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGr-I~vw~d~~~~~~~~t~t~lHWH~~~V 254 (792)
T KOG1963|consen 177 IVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGR-ILVWRDFGSSDDSETCTLLHWHHDEV 254 (792)
T ss_pred EEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCc-EEEEeccccccccccceEEEeccccc
Confidence 222344555655553311111 11123444689999999 9999999999999 99995433 223356778899999
Q ss_pred eEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 178 NAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
++++|+++| .+|++|+..|.+.+|.+.++++ ..+..-+++|..+.++|++.....+..|+.|.+.++
T Consensus 255 ~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k--------qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 255 NSLSFSSDG-AYLLSGGREGVLVLWQLETGKK--------QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred ceeEEecCC-ceEeecccceEEEEEeecCCCc--------ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence 999999999 5999999999999999999873 266677899999999999998888899999988753
No 193
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=5.5e-17 Score=114.43 Aligned_cols=228 Identities=16% Similarity=0.209 Sum_probs=152.4
Q ss_pred ceEEeecC-cEEEEEccCCccc--cceeeeecC--CCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 6 DLLATSSD-FLRVWRISDEDRR--VELKSLLNG--NKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 6 ~~l~~~~~-~v~iw~~~~~~~~--~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
++|.++++ .|+-|..++..+. .+....++. |......-.|+++...|..+..|. ++.|+.++-||+++++....
T Consensus 73 ~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 73 DFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDGRIQRE 151 (325)
T ss_pred hheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCCEEEEE
Confidence 46777787 9998887664221 122222221 221222246889999855555554 55799999999999999999
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCC-------CCCCeeEEEeeCCCCCEEEEEEeCC
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSE-------PDTPLVRLGWNKQDPRYMATIIMDS 152 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~l~~~~~~~ 152 (253)
+++|++.|.++.-. ....+++|++||++|+||.++.++...+..... ....|.+++- +...+++|+..
T Consensus 152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGgGp- 227 (325)
T KOG0649|consen 152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGGGP- 227 (325)
T ss_pred EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecCCC-
Confidence 99999999999986 777899999999999999999998776654322 2235666665 45677766544
Q ss_pred CeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEE
Q 035558 153 AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQW 232 (253)
Q Consensus 153 ~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 232 (253)
. +.+|.++..+ +...+. -..++..+.|..+ .++++++.+.+.-|.+..--+. .........++..|
T Consensus 228 ~-lslwhLrsse-~t~vfp-ipa~v~~v~F~~d---~vl~~G~g~~v~~~~l~Gvl~a--------~ip~~s~~c~s~s~ 293 (325)
T KOG0649|consen 228 K-LSLWHLRSSE-STCVFP-IPARVHLVDFVDD---CVLIGGEGNHVQSYTLNGVLQA--------NIPVESTACYSASW 293 (325)
T ss_pred c-eeEEeccCCC-ceEEEe-cccceeEeeeecc---eEEEeccccceeeeeeccEEEE--------eccCCccceeeecc
Confidence 3 9999999865 344443 3456777888754 5778888889999977652211 11222334555555
Q ss_pred cCCCCceE-EEEcCCcEEEEE
Q 035558 233 SSSQPDWV-AIAFSTKLQILR 252 (253)
Q Consensus 233 ~~~~~~~~-~~~~~~~i~vw~ 252 (253)
+..--.++ +++..+.+.|++
T Consensus 294 ~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 294 QTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred cCCceEEEEecccceeeeeee
Confidence 43322244 567777777763
No 194
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=4.9e-18 Score=131.84 Aligned_cols=206 Identities=14% Similarity=0.222 Sum_probs=155.8
Q ss_pred CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558 4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI 82 (253)
Q Consensus 4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 82 (253)
+..++++++| .+.+.+-.. +..+.+.+|. +.+.+-.|+ ++|.-|+++++||.|++|... |....++.
T Consensus 75 ~d~~~i~s~DGkf~il~k~~-----rVE~sv~AH~-----~A~~~gRW~-~dGtgLlt~GEDG~iKiWSrs-GMLRStl~ 142 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSA-----RVERSISAHA-----AAISSGRWS-PDGAGLLTAGEDGVIKIWSRS-GMLRSTVV 142 (737)
T ss_pred cceEEEEcCCceEEEecccc-----hhhhhhhhhh-----hhhhhcccC-CCCceeeeecCCceEEEEecc-chHHHHHh
Confidence 3446666667 888887665 7778888998 899999999 899999999999999999864 55555555
Q ss_pred cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558 83 AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR 161 (253)
Q Consensus 83 ~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~ 161 (253)
....+|+|++|. +.+.++.+- .+.+.+=-+.... .+..-..|.+-|.++.|+| ..+++++|+.|-. .++||..
T Consensus 143 Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~---k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~k-fKvWD~~ 216 (737)
T KOG1524|consen 143 QNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANS---KIIRWRAHDGLVLSLSWST-QSNIIASGGEDFR-FKIWDAQ 216 (737)
T ss_pred hcCceeEEEEECCCCCceEEec-CCeEEEeeccccc---ceeEEeccCcEEEEeecCc-cccceeecCCcee-EEeeccc
Confidence 567899999999 555555443 3456665555443 2233347888999999999 8999999999998 9999986
Q ss_pred CCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558 162 FPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA 241 (253)
Q Consensus 162 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 241 (253)
. .++..-..|+.+|++++|+|+. .++.+|. +++| .+ ....+.|..++||+||..+.+
T Consensus 217 G--~~Lf~S~~~ey~ITSva~npd~--~~~v~S~-nt~R------~~------------~p~~GSifnlsWS~DGTQ~a~ 273 (737)
T KOG1524|consen 217 G--ANLFTSAAEEYAITSVAFNPEK--DYLLWSY-NTAR------FS------------SPRVGSIFNLSWSADGTQATC 273 (737)
T ss_pred C--cccccCChhccceeeeeecccc--ceeeeee-eeee------ec------------CCCccceEEEEEcCCCceeec
Confidence 4 3477777899999999999993 5666653 3343 11 123578999999999998877
Q ss_pred EEcCCcEEE
Q 035558 242 IAFSTKLQI 250 (253)
Q Consensus 242 ~~~~~~i~v 250 (253)
++..|.+.+
T Consensus 274 gt~~G~v~~ 282 (737)
T KOG1524|consen 274 GTSTGQLIV 282 (737)
T ss_pred cccCceEEE
Confidence 777776643
No 195
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=3.8e-16 Score=122.19 Aligned_cols=229 Identities=12% Similarity=0.116 Sum_probs=144.2
Q ss_pred ecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe-CCCeEEEEeccC-cee--eeeeeccc
Q 035558 11 SSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS-IDTTCTIWDIER-EAV--DTQLIAHD 85 (253)
Q Consensus 11 ~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~-~~~--~~~~~~~~ 85 (253)
+.+ .|++|++... ..++.+..+... .....++++ +++++|++++ .++.|.+|++.. ++. ..... ..
T Consensus 9 ~~~~~I~~~~~~~~-g~l~~~~~~~~~------~~~~~l~~s-pd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~ 79 (330)
T PRK11028 9 PESQQIHVWNLNHE-GALTLLQVVDVP------GQVQPMVIS-PDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LP 79 (330)
T ss_pred CCCCCEEEEEECCC-CceeeeeEEecC------CCCccEEEC-CCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CC
Confidence 345 9999999643 334455555432 345678999 7888876654 578899999863 332 22222 23
Q ss_pred ccEEEEEec-CCCeEEEEeC-CCcEEEEEcCCCCCe-eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCC
Q 035558 86 KEVYDIAWG-GVGVFASVSA-DGSVRVFDLRDKEHS-TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF 162 (253)
Q Consensus 86 ~~v~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~ 162 (253)
.....++++ +++.+++++. ++.|.+|++.+.... ....... .......++++| +++++++++.....|.+||+.+
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECC
Confidence 456789999 8888877764 889999999753211 1121111 122567788999 8888877776655599999976
Q ss_pred CCCCe------eeecccccceeEEEEecCCCCeEEEecC-CCcEEEEeccCCCCCCCCCCCCeeec----cCCCceeEEE
Q 035558 163 PTLPV------VELQRHQASVNAIAWAPHSSCHICTAGD-DSQALIWDLSSMGQPVEGGLDPILAY----TAGAEIEQLQ 231 (253)
Q Consensus 163 ~~~~~------~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~v~~~~ 231 (253)
..... .... .......++|+|++ ++++++.. +++|.+|++......... ....... .+......+.
T Consensus 158 ~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~i~ 234 (330)
T PRK11028 158 DGHLVAQEPAEVTTV-EGAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEIEC-VQTLDMMPADFSDTRWAADIH 234 (330)
T ss_pred CCcccccCCCceecC-CCCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCEEE-EEEEecCCCcCCCCccceeEE
Confidence 33211 1111 12346789999999 57776665 999999999743211100 0000000 1122344689
Q ss_pred EcCCCCceEEEE-cCCcEEEEEC
Q 035558 232 WSSSQPDWVAIA-FSTKLQILRV 253 (253)
Q Consensus 232 ~~~~~~~~~~~~-~~~~i~vw~l 253 (253)
++|++++++++. .++.|.+|++
T Consensus 235 ~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 235 ITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred ECCCCCEEEEecCCCCeEEEEEE
Confidence 999999777765 4688999864
No 196
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=4.4e-16 Score=121.86 Aligned_cols=231 Identities=12% Similarity=0.107 Sum_probs=145.3
Q ss_pred CCceEEee-c-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe-CCCeEEEEeccCce---
Q 035558 4 KPDLLATS-S-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS-IDTTCTIWDIEREA--- 76 (253)
Q Consensus 4 ~~~~l~~~-~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~--- 76 (253)
++++|.++ . + .|.+|+++.. ..+....... .. .....++|+ ++++++++++ .++.|.+|++++..
T Consensus 45 d~~~lyv~~~~~~~i~~~~~~~~-g~l~~~~~~~-~~-----~~p~~i~~~-~~g~~l~v~~~~~~~v~v~~~~~~g~~~ 116 (330)
T PRK11028 45 DKRHLYVGVRPEFRVLSYRIADD-GALTFAAESP-LP-----GSPTHISTD-HQGRFLFSASYNANCVSVSPLDKDGIPV 116 (330)
T ss_pred CCCEEEEEECCCCcEEEEEECCC-CceEEeeeec-CC-----CCceEEEEC-CCCCEEEEEEcCCCeEEEEEECCCCCCC
Confidence 45555444 3 3 8999999732 2222222222 11 345689999 7888877765 47899999996432
Q ss_pred -eeeeeecccccEEEEEec-CCCeEEE-EeCCCcEEEEEcCCCCCeee----eeccCCCCCCeeEEEeeCCCCCEEEEEE
Q 035558 77 -VDTQLIAHDKEVYDIAWG-GVGVFAS-VSADGSVRVFDLRDKEHSTI----IYESSEPDTPLVRLGWNKQDPRYMATII 149 (253)
Q Consensus 77 -~~~~~~~~~~~v~~~~~~-~~~~l~~-~~~dg~i~i~d~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 149 (253)
.+..+. +......++++ +++++++ ...++.|.+||+.+...... .... ........++|+| ++++++++.
T Consensus 117 ~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~-~~g~~p~~~~~~p-dg~~lyv~~ 193 (330)
T PRK11028 117 APIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT-VEGAGPRHMVFHP-NQQYAYCVN 193 (330)
T ss_pred Cceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec-CCCCCCceEEECC-CCCEEEEEe
Confidence 222222 23346778889 8877755 45579999999987432211 0111 1123567899999 899988887
Q ss_pred eCCCeEEEEECCCCCC---Ceeeeccc------ccceeEEEEecCCCCeEEEec-CCCcEEEEeccCCCCCCCCCCCCee
Q 035558 150 MDSAKVVVLDIRFPTL---PVVELQRH------QASVNAIAWAPHSSCHICTAG-DDSQALIWDLSSMGQPVEGGLDPIL 219 (253)
Q Consensus 150 ~~~~~i~~~d~~~~~~---~~~~~~~~------~~~i~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 219 (253)
.....|.+||+..... .+..+... ......+.++|++ ++|+++. .++.|.+|++....... .
T Consensus 194 ~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg-~~lyv~~~~~~~I~v~~i~~~~~~~-------~ 265 (330)
T PRK11028 194 ELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG-RHLYACDRTASLISVFSVSEDGSVL-------S 265 (330)
T ss_pred cCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC-CEEEEecCCCCeEEEEEEeCCCCeE-------E
Confidence 7444599999974211 12222211 1123368899999 5777775 57999999997543221 1
Q ss_pred eccC---CCceeEEEEcCCCCceEEEEc-CCcEEEEEC
Q 035558 220 AYTA---GAEIEQLQWSSSQPDWVAIAF-STKLQILRV 253 (253)
Q Consensus 220 ~~~~---~~~v~~~~~~~~~~~~~~~~~-~~~i~vw~l 253 (253)
..++ ......++++|++++++++.. ++.|.+|++
T Consensus 266 ~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 266 FEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred EeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 1211 235568999999998886664 889999964
No 197
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.78 E-value=9.3e-17 Score=117.28 Aligned_cols=226 Identities=17% Similarity=0.240 Sum_probs=168.9
Q ss_pred CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEec-cCce--e
Q 035558 3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDI-EREA--V 77 (253)
Q Consensus 3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~-~~~~--~ 77 (253)
+++..+|.+-. .|.||..... +.++...+++.|. ..|+.++|+ +..+.|++++.|..-+||.. ..++ .
T Consensus 20 ~drt~iAv~~~~~evhiy~~~~~-~~w~~~htls~Hd-----~~vtgvdWa-p~snrIvtcs~drnayVw~~~~~~~Wkp 92 (361)
T KOG1523|consen 20 SDRTQIAVSPNNHEVHIYSMLGA-DLWEPAHTLSEHD-----KIVTGVDWA-PKSNRIVTCSHDRNAYVWTQPSGGTWKP 92 (361)
T ss_pred CCCceEEeccCCceEEEEEecCC-CCceeceehhhhC-----cceeEEeec-CCCCceeEccCCCCccccccCCCCeecc
Confidence 35556666664 9999998875 4477888888888 899999999 88889999999999999998 4444 4
Q ss_pred eeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeee-ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558 78 DTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIY-ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV 155 (253)
Q Consensus 78 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i 155 (253)
...+..++...+++.|+ .++.|++|+....|.+|-++..+..-+-. ......+.|.+++|+| ++-++++|+.|+. .
T Consensus 93 tlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k-~ 170 (361)
T KOG1523|consen 93 TLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGK-C 170 (361)
T ss_pred ceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-CcceecccccCcc-e
Confidence 44556688999999999 99999999999999999998776431111 1223455899999999 8899999999998 8
Q ss_pred EEEECC-----CCC--------CC----eeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCe
Q 035558 156 VVLDIR-----FPT--------LP----VVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPI 218 (253)
Q Consensus 156 ~~~d~~-----~~~--------~~----~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 218 (253)
+++..- ... .| +.++....+.+..+.|+|+| ..|+-.+.|..+.+-|.....+.. .
T Consensus 171 rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG-~~lawv~Hds~v~~~da~~p~~~v------~ 243 (361)
T KOG1523|consen 171 RVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG-NRLAWVGHDSTVSFVDAAGPSERV------Q 243 (361)
T ss_pred eEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC-CEeeEecCCCceEEeecCCCchhc------c
Confidence 888541 110 01 22333456789999999999 599999999999999988775322 1
Q ss_pred eeccCCCceeEEEEcCCCCceEEEEcC
Q 035558 219 LAYTAGAEIEQLQWSSSQPDWVAIAFS 245 (253)
Q Consensus 219 ~~~~~~~~v~~~~~~~~~~~~~~~~~~ 245 (253)
......-|..++.|-.+.. +++++.|
T Consensus 244 ~~~~~~lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 244 SVATAQLPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred chhhccCCceeeEeecCCc-eeecCCC
Confidence 2222236777888866543 5555555
No 198
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=6.7e-18 Score=127.17 Aligned_cols=191 Identities=18% Similarity=0.237 Sum_probs=147.0
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
.++..|++++ | ++|+|+.... ..+.....|. ..|.++.|+ +++.+|++-+.| ..+||+.+++..++.
T Consensus 154 ~~gs~latgg~dg~lRv~~~Ps~----~t~l~e~~~~-----~eV~DL~FS-~dgk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 154 GDGSKLATGGTDGTLRVWEWPSM----LTILEEIAHH-----AEVKDLDFS-PDGKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred CCCCEeeeccccceEEEEecCcc----hhhhhhHhhc-----CccccceeC-CCCcEEEEecCC-ceEEEEeccCchhhh
Confidence 3567888887 5 9999997665 6666777777 899999999 999999999999 899999999966655
Q ss_pred ee--cccccEEEEEec-CC-----CeEEEEeCCCcEEEEEcCCCCCee--eeeccCCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558 81 LI--AHDKEVYDIAWG-GV-----GVFASVSADGSVRVFDLRDKEHST--IIYESSEPDTPLVRLGWNKQDPRYMATIIM 150 (253)
Q Consensus 81 ~~--~~~~~v~~~~~~-~~-----~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 150 (253)
.. ........+.|. ++ ..++....-+.|+.||+....... ...........|++++.++ +|++++.|+.
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~ 301 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTM 301 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEecc
Confidence 43 233455677888 55 233444456678888776543211 1111222233899999999 9999999999
Q ss_pred CCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCC
Q 035558 151 DSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM 207 (253)
Q Consensus 151 ~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 207 (253)
+|. |.+++..+.+.....-+.|...|+.+.|+|+. +++++-+.|..+.|..+.-.
T Consensus 302 dGs-Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 302 DGS-VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred CCc-EEEEEeceeeeeEeehhhheeeeeeEEEcCCc-CcccccccCCceeEEEEeec
Confidence 999 99999988776555667899999999999998 79999999999999988763
No 199
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=8.7e-17 Score=129.72 Aligned_cols=205 Identities=14% Similarity=0.112 Sum_probs=138.1
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC---CeEEEEeccCcee--eeeeecccccE
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID---TTCTIWDIEREAV--DTQLIAHDKEV 88 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~--~~~~~~~~~~v 88 (253)
.|.+||.+.. ....+..|. ..+.+.+|+ |+++.|+.++.+ ..|++||+.+++. +..+.++ .
T Consensus 185 ~i~i~d~dg~-----~~~~lt~~~-----~~v~~p~wS-PDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~ 250 (429)
T PRK01742 185 EVRVADYDGF-----NQFIVNRSS-----QPLMSPAWS-PDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---N 250 (429)
T ss_pred EEEEECCCCC-----CceEeccCC-----CccccceEc-CCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---c
Confidence 8999998773 244566666 688999999 899988887643 3699999987753 3333333 3
Q ss_pred EEEEec-CCCeEEEEe-CCCcEEEE--EcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe-CCCeEEEEECCCC
Q 035558 89 YDIAWG-GVGVFASVS-ADGSVRVF--DLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM-DSAKVVVLDIRFP 163 (253)
Q Consensus 89 ~~~~~~-~~~~l~~~~-~dg~i~i~--d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-~~~~i~~~d~~~~ 163 (253)
..++|+ +++.|+.++ .+|.+.|| |+.++.. ..+ ..+...+....|+| +++.|+.++. ++. ..+|++...
T Consensus 251 ~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~l---t~~~~~~~~~~wSp-DG~~i~f~s~~~g~-~~I~~~~~~ 324 (429)
T PRK01742 251 GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQL---TSGAGNNTEPSWSP-DGQSILFTSDRSGS-PQVYRMSAS 324 (429)
T ss_pred CceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-Eee---ccCCCCcCCEEECC-CCCEEEEEECCCCC-ceEEEEECC
Confidence 468999 998888764 68876665 5555542 222 23344677899999 8887776654 555 888877543
Q ss_pred CCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEE
Q 035558 164 TLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA 243 (253)
Q Consensus 164 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 243 (253)
......+ .+.. ....|+|+| ++|+..+.++ +.+||+.++.... ..... ...+++|+|+++.++.++
T Consensus 325 ~~~~~~l-~~~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~g~~~~-------lt~~~--~~~~~~~sPdG~~i~~~s 390 (429)
T PRK01742 325 GGGASLV-GGRG--YSAQISADG-KTLVMINGDN-VVKQDLTSGSTEV-------LSSTF--LDESPSISPNGIMIIYSS 390 (429)
T ss_pred CCCeEEe-cCCC--CCccCCCCC-CEEEEEcCCC-EEEEECCCCCeEE-------ecCCC--CCCCceECCCCCEEEEEE
Confidence 3323333 3333 457899999 5787777655 5669998765321 11111 234678999999888888
Q ss_pred cCCcEEEEE
Q 035558 244 FSTKLQILR 252 (253)
Q Consensus 244 ~~~~i~vw~ 252 (253)
.++...+|.
T Consensus 391 ~~g~~~~l~ 399 (429)
T PRK01742 391 TQGLGKVLQ 399 (429)
T ss_pred cCCCceEEE
Confidence 888888775
No 200
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=5.3e-17 Score=121.37 Aligned_cols=194 Identities=19% Similarity=0.208 Sum_probs=150.0
Q ss_pred CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC--CeEEEEeccCceeeee
Q 035558 4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID--TTCTIWDIEREAVDTQ 80 (253)
Q Consensus 4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~ 80 (253)
++.++.+.++ .+++|....++--......+..+ ..+..+.-+|....++++|+.. ..+++||++..+.+..
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g------~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~ 188 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG------PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWS 188 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccceeeecC------CceeeeccCCCCCceEecCchhcccceeeeecccceeeee
Confidence 4555555555 99999998542112334444444 3566777776677888889988 8899999998755443
Q ss_pred eec-------c--cccEEEEEec-C--CCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558 81 LIA-------H--DKEVYDIAWG-G--VGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI 148 (253)
Q Consensus 81 ~~~-------~--~~~v~~~~~~-~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 148 (253)
-+. - .-.++++.|. . ...|++++.-+.+++||.+.+..+ +......+.+++++...| .++++++|
T Consensus 189 aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP--V~~fd~~E~~is~~~l~p-~gn~Iy~g 265 (412)
T KOG3881|consen 189 AKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP--VAQFDFLENPISSTGLTP-SGNFIYTG 265 (412)
T ss_pred ccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcc--eeEeccccCcceeeeecC-CCcEEEEe
Confidence 221 1 2245678888 4 789999999999999999977643 333334456999999999 99999999
Q ss_pred EeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558 149 IMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 149 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
...+. +..+|++........+.+..+.|.++..+|.+ .+|++++-|..+||+|+.+.+
T Consensus 266 n~~g~-l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~-~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 266 NTKGQ-LAKFDLRGGKLLGCGLKGITGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred cccch-hheecccCceeeccccCCccCCcceEEEcCCC-ceEEeeccceeEEEeecccch
Confidence 99998 99999999887566688899999999999998 599999999999999999844
No 201
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.77 E-value=3.5e-17 Score=127.00 Aligned_cols=212 Identities=15% Similarity=0.206 Sum_probs=147.6
Q ss_pred CceEEeec-CcEEEEEccCCcccccee--eeecCCCCccccCCeeEEEecC----CCCCEEEEEeCCCeEEEEeccCcee
Q 035558 5 PDLLATSS-DFLRVWRISDEDRRVELK--SLLNGNKNSEYCGPLTSFDWNE----AEPRRIGTSSIDTTCTIWDIEREAV 77 (253)
Q Consensus 5 ~~~l~~~~-~~v~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~dg~i~vwd~~~~~~ 77 (253)
|+.|+-.- +.+.+|+.....+..+.+ +.+++- ..+|-+|+. +.+--++.|-.-|.|.+.|....+.
T Consensus 135 gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt-------~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~ 207 (636)
T KOG2394|consen 135 GDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGT-------SPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEV 207 (636)
T ss_pred CCEEEEecCCeEEEEEccCcchhccchhhhcccCC-------CCceecccccccCCCCcceEEeeccCceEEecchhhHH
Confidence 44444443 488888887531111211 222222 223344421 4455677788889999988765332
Q ss_pred eeeee----cccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCC--------------Ceee-----------eeccC
Q 035558 78 DTQLI----AHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKE--------------HSTI-----------IYESS 126 (253)
Q Consensus 78 ~~~~~----~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~--------------~~~~-----------~~~~~ 126 (253)
...+. ..+..++++.|- +...|+.+-.+|.+.+||..-.. ...+ +....
T Consensus 208 sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~ 287 (636)
T KOG2394|consen 208 SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWH 287 (636)
T ss_pred HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeE
Confidence 22121 134789999999 77888899999999999874211 0000 00111
Q ss_pred CCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccC
Q 035558 127 EPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSS 206 (253)
Q Consensus 127 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 206 (253)
..++.|..++|+| ++++||+.+.||. ++|+|..+.+. +..++..-+...|++|+||| +|+++|++|.-|.||.+..
T Consensus 288 ~~~g~in~f~FS~-DG~~LA~VSqDGf-LRvF~fdt~eL-lg~mkSYFGGLLCvcWSPDG-KyIvtGGEDDLVtVwSf~e 363 (636)
T KOG2394|consen 288 IGEGSINEFAFSP-DGKYLATVSQDGF-LRIFDFDTQEL-LGVMKSYFGGLLCVCWSPDG-KYIVTGGEDDLVTVWSFEE 363 (636)
T ss_pred eccccccceeEcC-CCceEEEEecCce-EEEeeccHHHH-HHHHHhhccceEEEEEcCCc-cEEEecCCcceEEEEEecc
Confidence 1345788999999 9999999999999 99999988653 55666667889999999999 7999999999999999998
Q ss_pred CCCCCCCCCCCeeeccCCCceeEEEEcC
Q 035558 207 MGQPVEGGLDPILAYTAGAEIEQLQWSS 234 (253)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 234 (253)
.+... .-.+|..+|..|+|.|
T Consensus 364 rRVVA-------RGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 364 RRVVA-------RGQGHKSWVSVVAFDP 384 (636)
T ss_pred ceEEE-------eccccccceeeEeecc
Confidence 76543 6678999999999983
No 202
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=6.8e-19 Score=142.79 Aligned_cols=203 Identities=17% Similarity=0.232 Sum_probs=152.0
Q ss_pred cceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCC
Q 035558 27 VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSAD 105 (253)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d 105 (253)
.+.++.+.+|. ..|.|+.|. ..+.++++|+.|..++||..+++.+....++|.+.|++++.+ +...+++++.|
T Consensus 180 mk~ikrLlgH~-----naVyca~fD-rtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D 253 (1113)
T KOG0644|consen 180 MKNIKRLLGHR-----NAVYCAIFD-RTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASND 253 (1113)
T ss_pred HHHHHHHHhhh-----hheeeeeec-cccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccC
Confidence 35566678888 899999999 899999999999999999999999999999999999999999 88899999999
Q ss_pred CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeee---e-cccccceeEEE
Q 035558 106 GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE---L-QRHQASVNAIA 181 (253)
Q Consensus 106 g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~---~-~~~~~~i~~~~ 181 (253)
..|++|.+..+.++.++ .+|++.|++++|+|.. +.+.||. +++||.+-... ... + ......+.++.
T Consensus 254 ~vIrvWrl~~~~pvsvL---rghtgavtaiafsP~~-----sss~dgt-~~~wd~r~~~~-~y~prp~~~~~~~~~~s~~ 323 (1113)
T KOG0644|consen 254 KVIRVWRLPDGAPVSVL---RGHTGAVTAIAFSPRA-----SSSDDGT-CRIWDARLEPR-IYVPRPLKFTEKDLVDSIL 323 (1113)
T ss_pred ceEEEEecCCCchHHHH---hccccceeeeccCccc-----cCCCCCc-eEecccccccc-ccCCCCCCcccccceeeee
Confidence 99999999998854444 5788899999999932 5566777 99999982110 000 0 00112233333
Q ss_pred EecCCCCeEEEec-------------------------------------CCCcEEEEeccCCCCCCCCCCCCeeeccCC
Q 035558 182 WAPHSSCHICTAG-------------------------------------DDSQALIWDLSSMGQPVEGGLDPILAYTAG 224 (253)
Q Consensus 182 ~~~~~~~~l~~~~-------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 224 (253)
|..++ .-++|++ .+-.+.+|++.++... ....+|.
T Consensus 324 ~~~~~-~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~-------H~l~ghs 395 (1113)
T KOG0644|consen 324 FENNG-DRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLL-------HNLMGHS 395 (1113)
T ss_pred ccccc-cccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhh-------hhhcccc
Confidence 33333 1333333 3444555665555433 2566789
Q ss_pred CceeEEEEcCCCCceE-EEEcCCcEEEEEC
Q 035558 225 AEIEQLQWSSSQPDWV-AIAFSTKLQILRV 253 (253)
Q Consensus 225 ~~v~~~~~~~~~~~~~-~~~~~~~i~vw~l 253 (253)
..+..+.++|.++.+. +++.|+...||++
T Consensus 396 d~~yvLd~Hpfn~ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 396 DEVYVLDVHPFNPRIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred cceeeeeecCCCcHhhhhccCCCceEeeec
Confidence 9999999999988665 8999999999985
No 203
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=5.4e-16 Score=126.59 Aligned_cols=240 Identities=15% Similarity=0.191 Sum_probs=161.5
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
++++++|++. + .|.+|.--..+........+.=|. .+|++++|+ ++|.+|++|+..|.+-+|.+++++ .+-
T Consensus 215 pn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~-----~~V~~L~fS-~~G~~LlSGG~E~VLv~Wq~~T~~-kqf 287 (792)
T KOG1963|consen 215 PNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH-----DEVNSLSFS-SDGAYLLSGGREGVLVLWQLETGK-KQF 287 (792)
T ss_pred cccceEEEeccCCcEEEEeccccccccccceEEEecc-----cccceeEEe-cCCceEeecccceEEEEEeecCCC-ccc
Confidence 5677888887 4 999997544112223345566676 799999999 999999999999999999999988 555
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccC--------CCCCCeeEEEeeCCCCCEEEEEEeC
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESS--------EPDTPLVRLGWNKQDPRYMATIIMD 151 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~l~~~~~~ 151 (253)
++.-.++|..+.++ ++++.+....|..|.+....+......+.... ...+-.+.++++| ..+.++..+..
T Consensus 288 LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~ 366 (792)
T KOG1963|consen 288 LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHP 366 (792)
T ss_pred ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCC
Confidence 66678899999999 99999999999999998775443222221111 1122344455555 44444444444
Q ss_pred CCeEEEEECCCCCC------------------------------------------------------------------
Q 035558 152 SAKVVVLDIRFPTL------------------------------------------------------------------ 165 (253)
Q Consensus 152 ~~~i~~~d~~~~~~------------------------------------------------------------------ 165 (253)
+. |.+||+.+...
T Consensus 367 g~-vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~ 445 (792)
T KOG1963|consen 367 GH-VQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFI 445 (792)
T ss_pred ce-EEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeE
Confidence 44 55555533211
Q ss_pred -CeeeecccccceeEEEEecCCCC-eEEEecCCCcEEEEeccCCCCCCCCCCC---CeeeccCCCceeEEEEcCCCCceE
Q 035558 166 -PVVELQRHQASVNAIAWAPHSSC-HICTAGDDSQALIWDLSSMGQPVEGGLD---PILAYTAGAEIEQLQWSSSQPDWV 240 (253)
Q Consensus 166 -~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~ 240 (253)
.......|...+...++.+.-.. .+++++.||.++||-+...+........ .....-|..++++++|+.+|. ++
T Consensus 446 L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs-ll 524 (792)
T KOG1963|consen 446 LNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS-LL 524 (792)
T ss_pred EEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCc-EE
Confidence 01112345555555555443223 7899999999999999655433311111 011112789999999999996 99
Q ss_pred EEEcCCcEEEEE
Q 035558 241 AIAFSTKLQILR 252 (253)
Q Consensus 241 ~~~~~~~i~vw~ 252 (253)
+++.++.|.+|+
T Consensus 525 a~s~~~~Itiwd 536 (792)
T KOG1963|consen 525 AVSFDDTITIWD 536 (792)
T ss_pred EEecCCEEEEec
Confidence 999999999997
No 204
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=2.6e-16 Score=117.72 Aligned_cols=198 Identities=12% Similarity=0.124 Sum_probs=156.0
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce----eeeeeecccccEEEEEec--CCCeEEEEeCC--CcEEEEEcC
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA----VDTQLIAHDKEVYDIAWG--GVGVFASVSAD--GSVRVFDLR 114 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d--g~i~i~d~~ 114 (253)
.+|..+... ...|++|-.+|.+.+|..+.+. .+..+..+ ..+..|.-+ ....+++|+.. ..+.+||+.
T Consensus 106 ~~I~gl~~~---dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle 181 (412)
T KOG3881|consen 106 KSIKGLKLA---DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLE 181 (412)
T ss_pred ccccchhhc---CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecc
Confidence 566666653 4567788899999999988443 23333333 456667766 67788889999 889999999
Q ss_pred CCCCeeeeeccC------CCCCCeeEEEeeCCC--CCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCC
Q 035558 115 DKEHSTIIYESS------EPDTPLVRLGWNKQD--PRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHS 186 (253)
Q Consensus 115 ~~~~~~~~~~~~------~~~~~i~~~~~~~~~--~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 186 (253)
+.+.+-.-...+ .-.-+++.+.|-| . ...||+++.-+. +++||.+.+..|+..+.--+.+++++...|.+
T Consensus 182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hq-vR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g 259 (412)
T KOG3881|consen 182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQ-VRLYDTRHQRRPVAQFDFLENPISSTGLTPSG 259 (412)
T ss_pred cceeeeeccCCCCccccceeeeeeccceecC-CCCCceEEEEeccee-EEEecCcccCcceeEeccccCcceeeeecCCC
Confidence 874211111000 1122677888988 4 678999999988 99999999999999999889999999999999
Q ss_pred CCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 187 SCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 187 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
+++++|..-|.+..||++.+.... ..+.+..+.|+++..+|..+.++++|-|..+||+++
T Consensus 260 -n~Iy~gn~~g~l~~FD~r~~kl~g------~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 260 -NFIYTGNTKGQLAKFDLRGGKLLG------CGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred -cEEEEecccchhheecccCceeec------cccCCccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence 699999999999999999988654 456778999999999999998999999999999985
No 205
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.76 E-value=1.7e-16 Score=133.69 Aligned_cols=212 Identities=17% Similarity=0.182 Sum_probs=150.5
Q ss_pred ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce-------eeeeeecccccEEEEEec-CCCeE
Q 035558 28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA-------VDTQLIAHDKEVYDIAWG-GVGVF 99 (253)
Q Consensus 28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~-~~~~l 99 (253)
..+..+..|. ..+..++.+++++.++++|+.||+|++|+.+... ...++......+.++.+. .++.+
T Consensus 1039 ~lVAhL~Ehs-----~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1039 ILVAHLHEHS-----SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred eEeehhhhcc-----ccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 5666777777 7888999997777999999999999999986422 222333346788899998 99999
Q ss_pred EEEeCCCcEEEEEcCCCCCee-----eeeccCCCCCCeeEE-EeeCCCCC-EEEEEEeCCCeEEEEECCCCCCCee--ee
Q 035558 100 ASVSADGSVRVFDLRDKEHST-----IIYESSEPDTPLVRL-GWNKQDPR-YMATIIMDSAKVVVLDIRFPTLPVV--EL 170 (253)
Q Consensus 100 ~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~i~~~-~~~~~~~~-~l~~~~~~~~~i~~~d~~~~~~~~~--~~ 170 (253)
|.++.||.|++.++...+... .........+.+.+| +|...... .++.+...++ |..||+++... .. +.
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~-iv~~D~r~~~~-~w~lk~ 1191 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSR-IVSWDTRMRHD-AWRLKN 1191 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccc-eEEecchhhhh-HHhhhc
Confidence 999999999999998732111 111112223344443 45543455 5666666666 99999998653 22 23
Q ss_pred cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC---ceEE-EE-cC
Q 035558 171 QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP---DWVA-IA-FS 245 (253)
Q Consensus 171 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~-~~-~~ 245 (253)
....+.|++++.+|.+ .++++|...|.+.+||++-..... ....++..++..+..+|..+ ..++ +. ..
T Consensus 1192 ~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~------sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ 1264 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPIL------SWEHPARAPIRHVWLCPTYPQESVSVSAGSSSN 1264 (1431)
T ss_pred CccccceeEEEecCCc-eEEEEecCCceEEEEEeecCceee------cccCcccCCcceEEeeccCCCCceEEEecccCC
Confidence 3345789999999999 699999999999999999765322 34445668888888877654 3443 33 56
Q ss_pred CcEEEEEC
Q 035558 246 TKLQILRV 253 (253)
Q Consensus 246 ~~i~vw~l 253 (253)
+.+.+|++
T Consensus 1265 nevs~wn~ 1272 (1431)
T KOG1240|consen 1265 NEVSTWNM 1272 (1431)
T ss_pred Cceeeeec
Confidence 78999975
No 206
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=1.5e-15 Score=110.97 Aligned_cols=229 Identities=14% Similarity=0.152 Sum_probs=154.3
Q ss_pred CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEE-EEeCC------CeEEEEeccC
Q 035558 3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIG-TSSID------TTCTIWDIER 74 (253)
Q Consensus 3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~d------g~i~vwd~~~ 74 (253)
+|...++++.+ ..+||+.+.- +.....+.+... -.+..+-|- .++++ .|+.+ ..|.|||-..
T Consensus 15 QD~ScFava~~~Gfriyn~~P~----ke~~~r~~~~~G---~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 15 QDHSCFAVATDTGFRIYNCDPF----KESASRQFIDGG---FKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred cCCceEEEEecCceEEEecCch----hhhhhhccccCc---hhhhhHhhh---hceEEEecCCCCCCCCCceEEEEeccc
Confidence 45667788888 9999998753 322222222210 123333332 33443 33333 3799999666
Q ss_pred ceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCC-CCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC
Q 035558 75 EAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRD-KEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA 153 (253)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 153 (253)
.+++.++. ...+|.++.+. .+.+++.- ++.|.+|.+.. .+....+.....++ .+.+++=+. +..+||.-|...+
T Consensus 85 ~~~i~el~-f~~~I~~V~l~-r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPk-GlC~~~~~~-~k~~LafPg~k~G 159 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLR-RDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPK-GLCSLCPTS-NKSLLAFPGFKTG 159 (346)
T ss_pred CcEEEEEE-eccceeeEEEc-CCeEEEEe-cCeEEEEEcCCChhheeeeecccCCC-ceEeecCCC-CceEEEcCCCccc
Confidence 66777665 57899999986 44454443 66899999984 44444444333343 344444333 4456666565555
Q ss_pred eEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEEecCCCc-EEEEeccCCCCCCCCCCCCeeecc-CCCceeEE
Q 035558 154 KVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQ-ALIWDLSSMGQPVEGGLDPILAYT-AGAEIEQL 230 (253)
Q Consensus 154 ~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~ 230 (253)
.|.+-|+..... +-..+.+|...|.+++.+-+| .++||+|..|+ |||||..++.... ....+ ....|.++
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l~------E~RRG~d~A~iy~i 232 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLLQ------ELRRGVDRADIYCI 232 (346)
T ss_pred eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEee------eeecCCchheEEEE
Confidence 699999987553 357889999999999999999 69999998886 6899999988655 22222 36689999
Q ss_pred EEcCCCCceEEEEcCCcEEEEEC
Q 035558 231 QWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 231 ~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
+|||+..++++++..++++|+.+
T Consensus 233 aFSp~~s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 233 AFSPNSSWLAVSSDKGTLHIFSL 255 (346)
T ss_pred EeCCCccEEEEEcCCCeEEEEEe
Confidence 99999997778888899999864
No 207
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.8e-16 Score=116.70 Aligned_cols=185 Identities=14% Similarity=0.265 Sum_probs=136.9
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee-cccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCC-
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI-AHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEH- 118 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~- 118 (253)
..+..++|+ +.-..++++..|-.|++||-.. +....++ .....|++++|- ....|+.|+..| |.+|.......
T Consensus 99 ~dlr~~aWh-qH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 99 IDLRGVAWH-QHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred cceeeEeec-hhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 457789999 5666788899999999999876 4444444 345789999999 777888888776 89997653221
Q ss_pred ----------eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCC
Q 035558 119 ----------STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSC 188 (253)
Q Consensus 119 ----------~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 188 (253)
...+...++| .+|++|+|++ ++..+++++.+...|.+||..++.. +.......+.+.-+.|+|+++
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~-~pL~~~glgg~slLkwSPdgd- 251 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQK-IPLIPKGLGGFSLLKWSPDGD- 251 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCc-ccccccCCCceeeEEEcCCCC-
Confidence 1122334455 4999999999 8999999999888899999998653 222223356788899999994
Q ss_pred eEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558 189 HICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA 241 (253)
Q Consensus 189 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 241 (253)
+|+++.-|+..++|+....-... ....+ .+.|....|+|.|+.++-
T Consensus 252 ~lfaAt~davfrlw~e~q~wt~e------rw~lg-sgrvqtacWspcGsfLLf 297 (445)
T KOG2139|consen 252 VLFAATCDAVFRLWQENQSWTKE------RWILG-SGRVQTACWSPCGSFLLF 297 (445)
T ss_pred EEEEecccceeeeehhcccceec------ceecc-CCceeeeeecCCCCEEEE
Confidence 99999999999999654432211 12233 348999999999997763
No 208
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=3.3e-16 Score=122.65 Aligned_cols=193 Identities=14% Similarity=0.214 Sum_probs=145.8
Q ss_pred eEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeec
Q 035558 46 TSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYE 124 (253)
Q Consensus 46 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 124 (253)
..++++.++..+++.|+ ...|+-++++.|+.+..+....+.++++..+ ...+|++|+.+|.|..||.+.......+..
T Consensus 137 RDm~y~~~scDly~~gs-g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~ 215 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDA 215 (703)
T ss_pred ccccccCCCccEEEeec-CcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeec
Confidence 35566655566666555 4578889999999999888777999999999 888999999999999999998875544432
Q ss_pred cCC---CC-----CCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCC-eEEEecC
Q 035558 125 SSE---PD-----TPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSC-HICTAGD 195 (253)
Q Consensus 125 ~~~---~~-----~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~ 195 (253)
... +. ..|+++.|+. ++-.+++|..+|. +.|||+|..+..+..-....-+|..+.|.+.+.+ .+++ ..
T Consensus 216 ~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~-v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~D 292 (703)
T KOG2321|consen 216 ASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGS-VLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MD 292 (703)
T ss_pred ccccCCCccccccCcceEEEecC-CceeEEeeccCCc-EEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cc
Confidence 211 22 2599999997 7999999999999 9999999876433444445668999999886433 4444 44
Q ss_pred CCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEE
Q 035558 196 DSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQI 250 (253)
Q Consensus 196 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~v 250 (253)
...++|||-.+++. .........++.+++-|++..++++-.+..+..
T Consensus 293 k~~~kiWd~~~Gk~--------~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 293 KRILKIWDECTGKP--------MASIEPTSDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred hHHhhhcccccCCc--------eeeccccCCcCceeeecCCceEEEecCCCccee
Confidence 67899999988773 244445566999999999887777777665544
No 209
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.5e-15 Score=112.83 Aligned_cols=212 Identities=15% Similarity=0.236 Sum_probs=143.1
Q ss_pred cC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc----ee--------e
Q 035558 12 SD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE----AV--------D 78 (253)
Q Consensus 12 ~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~--------~ 78 (253)
.| .|++|+-.. +....++.... ..|++++|-|-.+..|+.|...| |.+|..... .. .
T Consensus 118 nddvVriy~kss-----t~pt~Lks~sQ----rnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~ 187 (445)
T KOG2139|consen 118 NDDVVRIYDKSS-----TCPTKLKSVSQ----RNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHL 187 (445)
T ss_pred cCcEEEEeccCC-----CCCceecchhh----cceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccch
Confidence 35 999999776 44444443332 57999999987788888888765 899976432 11 1
Q ss_pred eee--ecccccEEEEEec-CCCeEEEEeC-CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCe
Q 035558 79 TQL--IAHDKEVYDIAWG-GVGVFASVSA-DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAK 154 (253)
Q Consensus 79 ~~~--~~~~~~v~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~ 154 (253)
+.+ ++| .+|++|+|+ ++..+++++. |..|.+||..++...... ....+.+.-+.|+| ++.+|.++.-|+.
T Consensus 188 qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~---~~glgg~slLkwSP-dgd~lfaAt~dav- 261 (445)
T KOG2139|consen 188 QVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI---PKGLGGFSLLKWSP-DGDVLFAATCDAV- 261 (445)
T ss_pred hheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc---ccCCCceeeEEEcC-CCCEEEEecccce-
Confidence 112 244 689999999 9999998875 677999999999865444 23334788999999 9999999999998
Q ss_pred EEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCC----CC----C-----eeec
Q 035558 155 VVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGG----LD----P-----ILAY 221 (253)
Q Consensus 155 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~----~-----~~~~ 221 (253)
.++|+.........-.. ..+.|...+|+|+|..+|++++.. -++|.+....+..... .. + ....
T Consensus 262 frlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgs--p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ 338 (445)
T KOG2139|consen 262 FRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGS--PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTIC 338 (445)
T ss_pred eeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCC--ceEEEEeecCCCccccCcccceeeeeeccchhhhhh
Confidence 99996655443222222 345899999999996566666644 4556554433221000 00 0 0000
Q ss_pred c----CCCceeEEEEcCCCCceEEE
Q 035558 222 T----AGAEIEQLQWSSSQPDWVAI 242 (253)
Q Consensus 222 ~----~~~~v~~~~~~~~~~~~~~~ 242 (253)
. -.+++.+++|.|.|.++++.
T Consensus 339 ag~~l~cgeaq~lawDpsGeyLav~ 363 (445)
T KOG2139|consen 339 AGQRLCCGEAQCLAWDPSGEYLAVI 363 (445)
T ss_pred cCcccccCccceeeECCCCCEEEEE
Confidence 1 15678999999999866543
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.74 E-value=7e-17 Score=128.69 Aligned_cols=189 Identities=13% Similarity=0.156 Sum_probs=141.5
Q ss_pred CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeee
Q 035558 44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTII 122 (253)
Q Consensus 44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 122 (253)
.|..++|- |+|..|+.+.. ..+.+||...|..++++++|++.|.+++|+ +|..|++|+.|..|.+|.-.-.. .+
T Consensus 14 ci~d~afk-PDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG---~L 88 (1081)
T KOG1538|consen 14 CINDIAFK-PDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG---IL 88 (1081)
T ss_pred chheeEEC-CCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc---ee
Confidence 68899999 88888877754 579999999999999999999999999999 99999999999999999765443 12
Q ss_pred eccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEE
Q 035558 123 YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIW 202 (253)
Q Consensus 123 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iw 202 (253)
. -.|...|.||.|+| -...+++++-.. .-+|...... +...+ ....+.+.+|..|| ++|+.|-.+|+|.+-
T Consensus 89 -k-YSH~D~IQCMsFNP-~~h~LasCsLsd--FglWS~~qK~--V~K~k-ss~R~~~CsWtnDG-qylalG~~nGTIsiR 159 (1081)
T KOG1538|consen 89 -K-YSHNDAIQCMSFNP-ITHQLASCSLSD--FGLWSPEQKS--VSKHK-SSSRIICCSWTNDG-QYLALGMFNGTISIR 159 (1081)
T ss_pred -e-eccCCeeeEeecCc-hHHHhhhcchhh--ccccChhhhh--HHhhh-hheeEEEeeecCCC-cEEEEeccCceEEee
Confidence 1 14566999999999 888888888765 6678765432 22222 24568899999999 799999999999987
Q ss_pred eccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC-----ceEEEEcCCcEEEE
Q 035558 203 DLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP-----DWVAIAFSTKLQIL 251 (253)
Q Consensus 203 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~i~vw 251 (253)
+-....... .....+.+++|.+++|+|... .+..+..+.++.++
T Consensus 160 Nk~gEek~~-----I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy 208 (1081)
T KOG1538|consen 160 NKNGEEKVK-----IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFY 208 (1081)
T ss_pred cCCCCcceE-----EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEE
Confidence 543322211 112234688999999999743 22334444555444
No 211
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.73 E-value=2.5e-17 Score=117.31 Aligned_cols=158 Identities=22% Similarity=0.305 Sum_probs=121.4
Q ss_pred CCeeEEEecCCCC--CEEEEEeCCCeEEEEeccCce----------eeeeeecccccEEEEEec-CCCeEEEEeCCCcEE
Q 035558 43 GPLTSFDWNEAEP--RRIGTSSIDTTCTIWDIEREA----------VDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVR 109 (253)
Q Consensus 43 ~~v~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~----------~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~ 109 (253)
+.+.+..+.-..+ -++++|.++|.+.+||+.++. .......|..+|.++.|. .-+.=++|+.+..+.
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence 5566666431222 356788899999999999873 333445789999999998 555557888888899
Q ss_pred EEEcCCCCCeeeee-ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCC
Q 035558 110 VFDLRDKEHSTIIY-ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSC 188 (253)
Q Consensus 110 i~d~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 188 (253)
+|.+.-......+. ...-.+-.+..+..-| +++.+|+++.|++ |++|..++.. |+..+..|.+.|++++|+|+. .
T Consensus 231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~R-iRVyswrtl~-pLAVLkyHsagvn~vAfspd~-~ 306 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHR-IRVYSWRTLN-PLAVLKYHSAGVNAVAFSPDC-E 306 (323)
T ss_pred eeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCc-EEEEEeccCC-chhhhhhhhcceeEEEeCCCC-c
Confidence 99887542111111 1111122677888888 9999999999999 9999999976 699999999999999999998 4
Q ss_pred eEEEecCCCcEEEEec
Q 035558 189 HICTAGDDSQALIWDL 204 (253)
Q Consensus 189 ~l~~~~~dg~i~iwd~ 204 (253)
++++++.|++|.+|++
T Consensus 307 lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 307 LMAAASKDARISLWKL 322 (323)
T ss_pred hhhhccCCceEEeeec
Confidence 9999999999999986
No 212
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.73 E-value=2.4e-16 Score=122.65 Aligned_cols=175 Identities=12% Similarity=0.205 Sum_probs=133.0
Q ss_pred CCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCee
Q 035558 55 PRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLV 133 (253)
Q Consensus 55 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~ 133 (253)
...++.++.||.+.+.+-. ++....+..|.+.+.+-.|+ +|.-|+++++||.|++|.-...-. ......+.+|+
T Consensus 75 ~d~~~i~s~DGkf~il~k~-~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLR----Stl~Q~~~~v~ 149 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKS-ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLR----STVVQNEESIR 149 (737)
T ss_pred cceEEEEcCCceEEEeccc-chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHH----HHHhhcCceeE
Confidence 3567788899999887754 66777788999999999999 999999999999999997544321 11123344899
Q ss_pred EEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCC
Q 035558 134 RLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEG 213 (253)
Q Consensus 134 ~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 213 (253)
|++|.|+..+.+.+. .+ . +.+=.+..... +...++|.+-|.++.|+|.. .++++|++|-..+|||.....
T Consensus 150 c~~W~p~S~~vl~c~-g~-h-~~IKpL~~n~k-~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~~----- 219 (737)
T KOG1524|consen 150 CARWAPNSNSIVFCQ-GG-H-ISIKPLAANSK-IIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGAN----- 219 (737)
T ss_pred EEEECCCCCceEEec-CC-e-EEEeecccccc-eeEEeccCcEEEEeecCccc-cceeecCCceeEEeecccCcc-----
Confidence 999999544555443 22 2 77766765554 67788999999999999998 599999999999999976532
Q ss_pred CCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEE
Q 035558 214 GLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQ 249 (253)
Q Consensus 214 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~ 249 (253)
......|..+|++++|.|+ . +++.++-+.+|
T Consensus 220 ---Lf~S~~~ey~ITSva~npd-~-~~~v~S~nt~R 250 (737)
T KOG1524|consen 220 ---LFTSAAEEYAITSVAFNPE-K-DYLLWSYNTAR 250 (737)
T ss_pred ---cccCChhccceeeeeeccc-c-ceeeeeeeeee
Confidence 1355678999999999999 4 44444444444
No 213
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.73 E-value=1.5e-16 Score=123.64 Aligned_cols=159 Identities=21% Similarity=0.331 Sum_probs=126.7
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc--------------e--------------eeeeeecccccEEEEEec
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE--------------A--------------VDTQLIAHDKEVYDIAWG 94 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--------------~--------------~~~~~~~~~~~v~~~~~~ 94 (253)
..|+++.|-|-+...++.+-.+|.+++||.+-. . ++..+.--++.|...+|+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 689999999777888888889999999976421 0 111122234578889999
Q ss_pred -CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccc
Q 035558 95 -GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRH 173 (253)
Q Consensus 95 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 173 (253)
|+++||+.+.||.+||||+.+.+....+.... +...|++|+| |+++|++|+.|+- |.||.+...+. +..-++|
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF---GGLLCvcWSP-DGKyIvtGGEDDL-VtVwSf~erRV-VARGqGH 373 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF---GGLLCVCWSP-DGKYIVTGGEDDL-VTVWSFEERRV-VARGQGH 373 (636)
T ss_pred CCCceEEEEecCceEEEeeccHHHHHHHHHhhc---cceEEEEEcC-CccEEEecCCcce-EEEEEeccceE-EEecccc
Confidence 99999999999999999999887544443333 3899999999 9999999999998 99999987553 7788899
Q ss_pred ccceeEEEEecC-----------------------------------C------------CCeEEEecCCCcEEEEeccC
Q 035558 174 QASVNAIAWAPH-----------------------------------S------------SCHICTAGDDSQALIWDLSS 206 (253)
Q Consensus 174 ~~~i~~~~~~~~-----------------------------------~------------~~~l~~~~~dg~i~iwd~~~ 206 (253)
...|..++|.|- + ...|.+.+.|-.+.+||+..
T Consensus 374 kSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlte 453 (636)
T KOG2394|consen 374 KSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTE 453 (636)
T ss_pred ccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecch
Confidence 999999999830 0 13577888999999999976
Q ss_pred C
Q 035558 207 M 207 (253)
Q Consensus 207 ~ 207 (253)
.
T Consensus 454 D 454 (636)
T KOG2394|consen 454 D 454 (636)
T ss_pred h
Confidence 4
No 214
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=3e-14 Score=104.26 Aligned_cols=217 Identities=16% Similarity=0.182 Sum_probs=149.0
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEecc-Cceeeeeeec--ccccEEE
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE-REAVDTQLIA--HDKEVYD 90 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~--~~~~v~~ 90 (253)
.|-|||=... +++.++.-. .+|.++.+. ...|++.- .+.|+||.+. ..+.+..+.. ......+
T Consensus 76 kviIWDD~k~----~~i~el~f~------~~I~~V~l~---r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~ 141 (346)
T KOG2111|consen 76 KVIIWDDLKE----RCIIELSFN------SEIKAVKLR---RDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCS 141 (346)
T ss_pred eEEEEecccC----cEEEEEEec------cceeeEEEc---CCeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEe
Confidence 7999994443 666666544 589999987 55677665 5789999987 4455554432 2233555
Q ss_pred EEec-CCCeEEE-EeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCee
Q 035558 91 IAWG-GVGVFAS-VSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVV 168 (253)
Q Consensus 91 ~~~~-~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~ 168 (253)
++-. +..+|+. |-.-|.|++-|+...+.-. -.....|.+.|.|++.+. +|.++|+++..|+.|+|||..++.. +.
T Consensus 142 ~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~-p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~-l~ 218 (346)
T KOG2111|consen 142 LCPTSNKSLLAFPGFKTGQVQIVDLASTKPNA-PSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTL-LQ 218 (346)
T ss_pred ecCCCCceEEEcCCCccceEEEEEhhhcCcCC-ceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcE-ee
Confidence 5544 5555554 3456999999998776421 122247788999999999 9999999999999999999999774 66
Q ss_pred eecc--cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCC--CC------CCCe---------eeccCCCceeE
Q 035558 169 ELQR--HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVE--GG------LDPI---------LAYTAGAEIEQ 229 (253)
Q Consensus 169 ~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~------~~~~---------~~~~~~~~v~~ 229 (253)
+++. ....|++|+|+|+. .+|+++|..|++.||.++....... .. ..|. .+.-..++..-
T Consensus 219 E~RRG~d~A~iy~iaFSp~~-s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~ 297 (346)
T KOG2111|consen 219 ELRRGVDRADIYCIAFSPNS-SWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCI 297 (346)
T ss_pred eeecCCchheEEEEEeCCCc-cEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEE
Confidence 6653 34579999999999 6999999999999999986442221 00 0000 00111345556
Q ss_pred EEEcCCCCceEEEEcCCcE
Q 035558 230 LQWSSSQPDWVAIAFSTKL 248 (253)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~i 248 (253)
++|-.+...+++.+.|+.-
T Consensus 298 ~~fg~~~nsvi~i~~Dgsy 316 (346)
T KOG2111|consen 298 IAFGSETNTVIAICADGSY 316 (346)
T ss_pred EEecCCCCeEEEEEeCCcE
Confidence 6777664457777777643
No 215
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=7.9e-17 Score=125.56 Aligned_cols=215 Identities=11% Similarity=0.053 Sum_probs=146.9
Q ss_pred eeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc--------eeeeeeecccccEEEEEec-CCCeEE
Q 035558 30 KSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE--------AVDTQLIAHDKEVYDIAWG-GVGVFA 100 (253)
Q Consensus 30 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--------~~~~~~~~~~~~v~~~~~~-~~~~l~ 100 (253)
..++..|. +.|+.+.|+ +....|++++.||+|++|+++.. +++.++++|.++|.|+++. ++..++
T Consensus 287 k~tl~s~~-----d~ir~l~~~-~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~y 360 (577)
T KOG0642|consen 287 KFTLRSHD-----DCIRALAFH-PSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCY 360 (577)
T ss_pred eeeeecch-----hhhhhhhcC-CCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEE
Confidence 34566666 789999998 77778999999999999999432 3778899999999999999 999999
Q ss_pred EEeCCCcEEEEEcCCCC-------CeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccc
Q 035558 101 SVSADGSVRVFDLRDKE-------HSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRH 173 (253)
Q Consensus 101 ~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 173 (253)
+|+.||+|+.|++.... .........+|...++.+++++ ....|++++.||+ ++.|+......+.......
T Consensus 361 sgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgT-vr~w~~~~~~~~~f~~~~e 438 (577)
T KOG0642|consen 361 SGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGT-VRLWEPTEESPCTFGEPKE 438 (577)
T ss_pred eeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCce-EEeeccCCcCccccCCccc
Confidence 99999999999775322 1122234457888999999999 8888999999999 9999987654322222222
Q ss_pred ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 174 QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 174 ~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
.+...++.+-.......++...-+.--++++..................-...+..+.++|.....+++..+..|++++
T Consensus 439 ~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~d 517 (577)
T KOG0642|consen 439 HGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFD 517 (577)
T ss_pred cCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccc
Confidence 3344566665543222333223333333343333322100000000111235678899999998888999999999876
No 216
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.72 E-value=2.9e-17 Score=125.37 Aligned_cols=218 Identities=13% Similarity=0.176 Sum_probs=166.8
Q ss_pred CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558 4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI 82 (253)
Q Consensus 4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 82 (253)
+..++|++.. .++|||-.. ..+..++.| ..|..+.|- |..-+|++++..|.++.-|+.+|+.+..+.
T Consensus 181 neq~~AVAQK~y~yvYD~~G-----tElHClk~~------~~v~rLeFL-PyHfLL~~~~~~G~L~Y~DVS~GklVa~~~ 248 (545)
T KOG1272|consen 181 NEQFFAVAQKKYVYVYDNNG-----TELHCLKRH------IRVARLEFL-PYHFLLVAASEAGFLKYQDVSTGKLVASIR 248 (545)
T ss_pred chHHHHhhhhceEEEecCCC-----cEEeehhhc------Cchhhhccc-chhheeeecccCCceEEEeechhhhhHHHH
Confidence 5567888887 999999876 556666666 478999999 778889999999999999999999999998
Q ss_pred cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558 83 AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR 161 (253)
Q Consensus 83 ~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~ 161 (253)
.-.+.+..|+-+ -+..+-+|...|+|.+|.....++ +.....|.++|.++++++ +|.++++++.|.. ++|||+|
T Consensus 249 t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP---LvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~-~kIWDlR 323 (545)
T KOG1272|consen 249 TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP---LVKILCHRGPVSSIAVDR-GGRYMATTGLDRK-VKIWDLR 323 (545)
T ss_pred ccCCccchhhcCCccceEEEcCCCceEEecCCCCcch---HHHHHhcCCCcceEEECC-CCcEEeecccccc-eeEeeec
Confidence 888889889888 778899999999999999887774 334446777999999999 9999999999999 9999999
Q ss_pred CCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558 162 FPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA 241 (253)
Q Consensus 162 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 241 (253)
+..+ +.++.. ..+...+++|..| +++.+....+.||.=.....+ ....|........+|.++.|.|-.. ++.
T Consensus 324 ~~~q-l~t~~t-p~~a~~ls~Sqkg---lLA~~~G~~v~iw~d~~~~s~--~~~~pYm~H~~~~~V~~l~FcP~ED-vLG 395 (545)
T KOG1272|consen 324 NFYQ-LHTYRT-PHPASNLSLSQKG---LLALSYGDHVQIWKDALKGSG--HGETPYMNHRCGGPVEDLRFCPYED-VLG 395 (545)
T ss_pred cccc-cceeec-CCCcccccccccc---ceeeecCCeeeeehhhhcCCC--CCCcchhhhccCcccccceeccHHH-eee
Confidence 9775 444443 4466778888776 444455668999943221111 0112333344466999999999875 665
Q ss_pred EEcCC
Q 035558 242 IAFST 246 (253)
Q Consensus 242 ~~~~~ 246 (253)
.|..+
T Consensus 396 IGH~~ 400 (545)
T KOG1272|consen 396 IGHAG 400 (545)
T ss_pred ccccC
Confidence 44433
No 217
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=5.4e-17 Score=126.47 Aligned_cols=173 Identities=17% Similarity=0.152 Sum_probs=130.6
Q ss_pred eeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCC-EEEEEEeCCCe
Q 035558 77 VDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPR-YMATIIMDSAK 154 (253)
Q Consensus 77 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~~~~~ 154 (253)
..+.+.+|++-|.+++|+ +|.+|++|+.|-.+.|||.-..+....+ ..+|...|.++.|-|..++ ++++|..|..
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~- 118 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKL- 118 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcce-
Confidence 445678999999999999 9999999999999999999866644444 3477889999999997665 5556666666
Q ss_pred EEEEECCC---------CCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCC---eeecc
Q 035558 155 VVVLDIRF---------PTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDP---ILAYT 222 (253)
Q Consensus 155 i~~~d~~~---------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~ 222 (253)
|+++|+.. ...+...+..|...|..++-.|++++.+.++++||+|+-+|++....-......+ .....
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence 99999985 2334566778999999999999999999999999999999999854211000001 11112
Q ss_pred CCCceeEEEEcCCCCceEE-EEcCCcEEEEE
Q 035558 223 AGAEIEQLQWSSSQPDWVA-IAFSTKLQILR 252 (253)
Q Consensus 223 ~~~~v~~~~~~~~~~~~~~-~~~~~~i~vw~ 252 (253)
.--...++..+|..+++++ ++.|-..++++
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD 229 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYD 229 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhh
Confidence 2345688999999887775 45566666654
No 218
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.71 E-value=2.4e-15 Score=108.88 Aligned_cols=228 Identities=17% Similarity=0.138 Sum_probs=158.4
Q ss_pred cEEEEEccCCccccceeeeecCCCCcccc-CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce--eeeeeecccccEEE
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYC-GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA--VDTQLIAHDKEVYD 90 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~ 90 (253)
.|.++..+.. .....+++-...... ....++.|+ +.+..++++..+|.+.+-+..... .++.++.|.-+++-
T Consensus 96 ~i~~~r~~~~----~ss~~L~~ls~~ki~~~~~lslD~~-~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wt 170 (339)
T KOG0280|consen 96 QIQLYRNDED----ESSVHLRGLSSKKISVVEALSLDIS-TSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWT 170 (339)
T ss_pred eEEEEeeccc----eeeeeecccchhhhhheeeeEEEee-ccCceEEEEcCCCcEEEEecceeeeeecccccccceeeee
Confidence 7777776654 223333332211110 124577888 778889999999999866655444 34578899999999
Q ss_pred EEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCee
Q 035558 91 IAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVV 168 (253)
Q Consensus 91 ~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~ 168 (253)
..|+ +.+++.+|+.|+.+..||+|.++. ........|...|.++.-+|..+.+|++|++|.. |++||.|+..+|+.
T Consensus 171 a~f~~~~pnlvytGgDD~~l~~~D~R~p~~-~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm~kPl~ 248 (339)
T KOG0280|consen 171 AKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNMGKPLF 248 (339)
T ss_pred eecccCCCceEEecCCCceEEEEEecCCcc-eeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcccCccc
Confidence 9999 889999999999999999995552 2333355677799999999989999999999999 99999998887776
Q ss_pred eecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE-EcCCc
Q 035558 169 ELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI-AFSTK 247 (253)
Q Consensus 169 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~ 247 (253)
.-.- .+.|+.+.++|.-...|+.++.-+-.+|-+........ .........|.+-+..-.|......++++ ..|+.
T Consensus 249 ~~~v-~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~--~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~ 325 (339)
T KOG0280|consen 249 KAKV-GGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEF--QIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKK 325 (339)
T ss_pred cCcc-ccceEEEEecchhhhHHHHHHHhcCceEEEecccccch--heeeeccccccceeeccccccccceeeeeeccccc
Confidence 5543 47899999999653345555555567888777654321 00112344567777777785544434443 45666
Q ss_pred EE-EE
Q 035558 248 LQ-IL 251 (253)
Q Consensus 248 i~-vw 251 (253)
++ +|
T Consensus 326 ~~~~W 330 (339)
T KOG0280|consen 326 IRQLW 330 (339)
T ss_pred eeeee
Confidence 44 66
No 219
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.71 E-value=5.8e-15 Score=124.74 Aligned_cols=243 Identities=11% Similarity=0.106 Sum_probs=160.2
Q ss_pred CCCCCceEEeecC--cEEEEEccCCc---cccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc
Q 035558 1 ECQKPDLLATSSD--FLRVWRISDED---RRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE 75 (253)
Q Consensus 1 sp~~~~~l~~~~~--~v~iw~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 75 (253)
+++.+.++++|++ +|++|+...-. ...+...++.... .++.++... .+++.+|.++.||.|++.+++..
T Consensus 1057 s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~-----sr~~~vt~~-~~~~~~Av~t~DG~v~~~~id~~ 1130 (1431)
T KOG1240|consen 1057 SSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEG-----SRVEKVTMC-GNGDQFAVSTKDGSVRVLRIDHY 1130 (1431)
T ss_pred cCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccC-----CceEEEEec-cCCCeEEEEcCCCeEEEEEcccc
Confidence 3567789999995 99999987631 1123333333233 678889888 88999999999999999998762
Q ss_pred e-------eeeeeecc-cccEE-EEEec--CCC-eEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCC
Q 035558 76 A-------VDTQLIAH-DKEVY-DIAWG--GVG-VFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPR 143 (253)
Q Consensus 76 ~-------~~~~~~~~-~~~v~-~~~~~--~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 143 (253)
. .......+ .+.+. ..+|. ... .++.+..-+.|..||+++......+..... .+.|++++.+| .++
T Consensus 1131 ~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~-hG~vTSi~idp-~~~ 1208 (1431)
T KOG1240|consen 1131 NVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR-HGLVTSIVIDP-WCN 1208 (1431)
T ss_pred ccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc-ccceeEEEecC-Cce
Confidence 1 11111212 23333 33444 444 788888899999999998764444433333 35899999999 888
Q ss_pred EEEEEEeCCCeEEEEECCCCCCCeeee-cccccceeEEEEecCCC--CeEEEec--CCCcEEEEeccCCCCCCC---C--
Q 035558 144 YMATIIMDSAKVVVLDIRFPTLPVVEL-QRHQASVNAIAWAPHSS--CHICTAG--DDSQALIWDLSSMGQPVE---G-- 213 (253)
Q Consensus 144 ~l~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~--~~l~~~~--~dg~i~iwd~~~~~~~~~---~-- 213 (253)
.++.|+..|. +.+||+|-.. ++... .++..+++.+..+|-.+ ...++++ ..+.|.+|++.++..... .
T Consensus 1209 WlviGts~G~-l~lWDLRF~~-~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~ 1286 (1431)
T KOG1240|consen 1209 WLVIGTSRGQ-LVLWDLRFRV-PILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDG 1286 (1431)
T ss_pred EEEEecCCce-EEEEEeecCc-eeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCC
Confidence 9999999998 9999999754 34443 23557888888887543 3454444 578999999998753320 0
Q ss_pred -----CCCCee--eccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 214 -----GLDPIL--AYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 214 -----~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
...|.. ...+.-......+..-+..+++++.|..|+.||.
T Consensus 1287 ~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1287 APILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred CcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence 000110 0012222233344444556889999999999984
No 220
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.5e-14 Score=116.65 Aligned_cols=206 Identities=9% Similarity=0.070 Sum_probs=128.7
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC---CeEEEEeccCceeeeeeecccccEEE
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID---TTCTIWDIEREAVDTQLIAHDKEVYD 90 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~ 90 (253)
.|.++|.+. .....+..+. ..+.+.+|+ |+++.|+..+.+ ..|++||+.+++... +....+.+..
T Consensus 177 ~L~~~D~dG-----~~~~~l~~~~-----~~v~~p~wS-PDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~ 244 (427)
T PRK02889 177 QLQISDADG-----QNAQSALSSP-----EPIISPAWS-PDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSA 244 (427)
T ss_pred EEEEECCCC-----CCceEeccCC-----CCcccceEc-CCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccc
Confidence 677777754 3333444555 678899999 889888876643 369999998886443 3334455678
Q ss_pred EEec-CCCeEE-EEeCCCcEEEEEcC--CCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCC
Q 035558 91 IAWG-GVGVFA-SVSADGSVRVFDLR--DKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLP 166 (253)
Q Consensus 91 ~~~~-~~~~l~-~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~ 166 (253)
.+|+ +++.|+ +.+.+|...+|.++ ++. ...+ ..+........|+| +++.|+..+..++...+|.+......
T Consensus 245 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~l---t~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~ 319 (427)
T PRK02889 245 PAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRL---TQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGA 319 (427)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCC-cEEC---CCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCc
Confidence 8999 888776 56778887777654 333 2222 22233456788999 88888766654322666654322211
Q ss_pred eeeecccccceeEEEEecCCCCeEEEecCCC---cEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEE
Q 035558 167 VVELQRHQASVNAIAWAPHSSCHICTAGDDS---QALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA 243 (253)
Q Consensus 167 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 243 (253)
...+..+.......+|+|+| ++++..+.++ .|.+||+.++.... +. .........|+|+++.++..+
T Consensus 320 ~~~lt~~g~~~~~~~~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~~~~--------lt-~~~~~~~p~~spdg~~l~~~~ 389 (427)
T PRK02889 320 AQRVTFTGSYNTSPRISPDG-KLLAYISRVGGAFKLYVQDLATGQVTA--------LT-DTTRDESPSFAPNGRYILYAT 389 (427)
T ss_pred eEEEecCCCCcCceEECCCC-CEEEEEEccCCcEEEEEEECCCCCeEE--------cc-CCCCccCceECCCCCEEEEEE
Confidence 23332223334568999999 5777665443 69999998765221 11 122346789999999877655
Q ss_pred cCC
Q 035558 244 FST 246 (253)
Q Consensus 244 ~~~ 246 (253)
.++
T Consensus 390 ~~~ 392 (427)
T PRK02889 390 QQG 392 (427)
T ss_pred ecC
Confidence 443
No 221
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2.8e-16 Score=120.68 Aligned_cols=219 Identities=19% Similarity=0.283 Sum_probs=170.2
Q ss_pred cceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee-cccccEEEEEec---CCCeEEEE
Q 035558 27 VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI-AHDKEVYDIAWG---GVGVFASV 102 (253)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~---~~~~l~~~ 102 (253)
+.+...|..|. +.|..|.|+ ..+..|++|+.|..|.+||...++....+. +|...|..-.|- +...++++
T Consensus 132 ~~l~~kL~~H~-----GcVntV~FN-~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~ 205 (559)
T KOG1334|consen 132 LRLQKKLNKHK-----GCVNTVHFN-QRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTS 205 (559)
T ss_pred hhhhhcccCCC-----Cccceeeec-ccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceec
Confidence 45566778888 999999999 999999999999999999999888776665 798888888886 77789999
Q ss_pred eCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC--Ceeeeccccc---ce
Q 035558 103 SADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL--PVVELQRHQA---SV 177 (253)
Q Consensus 103 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~---~i 177 (253)
+.||.+++=.+..............|.++|..++.-|.+...|.+++.|+. +.-+|++.... .+..-..+.. ..
T Consensus 206 s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~-v~~~Dlr~~~pa~~~~cr~~~~~~~v~L 284 (559)
T KOG1334|consen 206 SRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAV-VFHIDLRQDVPAEKFVCREADEKERVGL 284 (559)
T ss_pred cccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccc-eeeeeeccCCccceeeeeccCCccceee
Confidence 999999998877655444344445677799999999988999999999998 99999987542 1222223333 57
Q ss_pred eEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCC----CCC-eeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 178 NAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGG----LDP-ILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
+.++..|.....+++++.|-.+++||.+......... ..| .......-.|++++++.++..++++-.|..|.+++
T Consensus 285 ~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~ 364 (559)
T KOG1334|consen 285 YTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFN 364 (559)
T ss_pred eeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEec
Confidence 8899999887799999999999999998765432111 001 11113356789999998888899888888888764
No 222
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.70 E-value=5.6e-15 Score=105.97 Aligned_cols=147 Identities=16% Similarity=0.358 Sum_probs=96.9
Q ss_pred EEEec-CCCeEEEEeC----------CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE--eCCCeEE
Q 035558 90 DIAWG-GVGVFASVSA----------DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII--MDSAKVV 156 (253)
Q Consensus 90 ~~~~~-~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~~~~~i~ 156 (253)
.+.|+ .|+.|+.-.. -+...+|.++........... ...++|.+++|+| +++.|++.. .+.. |.
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~WsP-~g~~favi~g~~~~~-v~ 86 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWSP-NGNEFAVIYGSMPAK-VT 86 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEEECc-CCCEEEEEEccCCcc-cE
Confidence 45666 6655443322 234666666544322222222 2234799999999 777765543 3455 99
Q ss_pred EEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecC---CCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEc
Q 035558 157 VLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGD---DSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWS 233 (253)
Q Consensus 157 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 233 (253)
+||++ ..++..+. ...++.+.|+|+| ++|++++. .|.|.+||+++.+.. ....| ..++.++|+
T Consensus 87 lyd~~--~~~i~~~~--~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~~i--------~~~~~-~~~t~~~Ws 152 (194)
T PF08662_consen 87 LYDVK--GKKIFSFG--TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKKKI--------STFEH-SDATDVEWS 152 (194)
T ss_pred EEcCc--ccEeEeec--CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCEEe--------ecccc-CcEEEEEEc
Confidence 99997 22355554 5678899999999 68888764 467999999965532 22333 347899999
Q ss_pred CCCCceEEEEc------CCcEEEEEC
Q 035558 234 SSQPDWVAIAF------STKLQILRV 253 (253)
Q Consensus 234 ~~~~~~~~~~~------~~~i~vw~l 253 (253)
|+|++++++.. |+.++||+.
T Consensus 153 PdGr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 153 PDGRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred CCCCEEEEEEeccceeccccEEEEEe
Confidence 99999886653 788999973
No 223
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=2.7e-14 Score=115.16 Aligned_cols=205 Identities=13% Similarity=0.099 Sum_probs=131.5
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe---CCCeEEEEeccCceeeeeeecccccEEE
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS---IDTTCTIWDIEREAVDTQLIAHDKEVYD 90 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 90 (253)
.|.++|.+.. . .+.+..+. ..+.+.+|+ |+++.|+..+ .+..|++|++.+++... +....+.+..
T Consensus 180 ~l~~~d~dg~----~-~~~lt~~~-----~~~~~p~wS-PDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~ 247 (429)
T PRK03629 180 ELRVSDYDGY----N-QFVVHRSP-----QPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGA 247 (429)
T ss_pred eEEEEcCCCC----C-CEEeecCC-----CceeeeEEc-CCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCC
Confidence 6888888763 2 23333444 578899999 8998887654 23579999998875332 2222334456
Q ss_pred EEec-CCCeEEEE-eCCC--cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC-C-eEEEEECCCCC
Q 035558 91 IAWG-GVGVFASV-SADG--SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS-A-KVVVLDIRFPT 164 (253)
Q Consensus 91 ~~~~-~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-~-~i~~~d~~~~~ 164 (253)
.+|+ +++.|+.. +.+| .|.+||+.+++... +. .....+....|+| +++.|+..+.++ . .|+++|+.+..
T Consensus 248 ~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt---~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~ 322 (429)
T PRK03629 248 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VT---DGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGA 322 (429)
T ss_pred eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-cc---CCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCC
Confidence 8999 99887755 4455 48889998775322 21 2233677899999 888887776554 2 25555665543
Q ss_pred CCeeeecccccceeEEEEecCCCCeEEEec-CC--CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558 165 LPVVELQRHQASVNAIAWAPHSSCHICTAG-DD--SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA 241 (253)
Q Consensus 165 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 241 (253)
...+..+........|+|+| ++|+..+ .+ ..|.+||+.++... .+.. ........|+|+|+.++.
T Consensus 323 --~~~lt~~~~~~~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~g~~~--------~Lt~-~~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 323 --PQRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGVQ--------VLTD-TFLDETPSIAPNGTMVIY 390 (429)
T ss_pred --eEEeecCCCCccCEEECCCC-CEEEEEEccCCCceEEEEECCCCCeE--------EeCC-CCCCCCceECCCCCEEEE
Confidence 34444344456678999999 4665544 33 35888898776522 1111 122346789999998887
Q ss_pred EEcCCc
Q 035558 242 IAFSTK 247 (253)
Q Consensus 242 ~~~~~~ 247 (253)
.+.++.
T Consensus 391 ~s~~~~ 396 (429)
T PRK03629 391 SSSQGM 396 (429)
T ss_pred EEcCCC
Confidence 777665
No 224
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=2.2e-14 Score=116.06 Aligned_cols=202 Identities=12% Similarity=0.112 Sum_probs=130.2
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC---CeEEEEeccCceeeeeeecccccEEE
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID---TTCTIWDIEREAVDTQLIAHDKEVYD 90 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~ 90 (253)
.|.+||.+. ...+.+..+. ..+.+.+|+ |+++.|+..+.+ ..|++||+.+++... +....+...+
T Consensus 185 ~l~i~D~~g-----~~~~~lt~~~-----~~v~~p~wS-pDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~ 252 (433)
T PRK04922 185 ALQVADSDG-----YNPQTILRSA-----EPILSPAWS-PDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGA 252 (433)
T ss_pred EEEEECCCC-----CCceEeecCC-----CccccccCC-CCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccC
Confidence 688888865 3333444555 678899999 889888877633 469999998776433 3333445567
Q ss_pred EEec-CCCeEE-EEeCCC--cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC-C-eEEEEECCCCC
Q 035558 91 IAWG-GVGVFA-SVSADG--SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS-A-KVVVLDIRFPT 164 (253)
Q Consensus 91 ~~~~-~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-~-~i~~~d~~~~~ 164 (253)
.+|+ +++.++ +.+.+| .|++||+.+++... + ..+.......+|+| +++.|+..+..+ . .|+++|+.++.
T Consensus 253 ~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-l---t~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~ 327 (433)
T PRK04922 253 PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-L---TNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGS 327 (433)
T ss_pred ceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-C---ccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCC
Confidence 8999 888665 455555 59999998876322 2 22223456789999 888888776433 2 26666766543
Q ss_pred CCeeeecccccceeEEEEecCCCCeEEEecCC-C--cEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558 165 LPVVELQRHQASVNAIAWAPHSSCHICTAGDD-S--QALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA 241 (253)
Q Consensus 165 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 241 (253)
...+..+......++|+|+| ++++..+.+ + .|.+||+.++... . ..+........|+|+++.++.
T Consensus 328 --~~~lt~~g~~~~~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~~~--------~-Lt~~~~~~~p~~spdG~~i~~ 395 (433)
T PRK04922 328 --AERLTFQGNYNARASVSPDG-KKIAMVHGSGGQYRIAVMDLSTGSVR--------T-LTPGSLDESPSFAPNGSMVLY 395 (433)
T ss_pred --eEEeecCCCCccCEEECCCC-CEEEEEECCCCceeEEEEECCCCCeE--------E-CCCCCCCCCceECCCCCEEEE
Confidence 33333333445578999999 466654433 2 6899998765421 1 122223456799999997765
Q ss_pred EEc
Q 035558 242 IAF 244 (253)
Q Consensus 242 ~~~ 244 (253)
.+.
T Consensus 396 ~s~ 398 (433)
T PRK04922 396 ATR 398 (433)
T ss_pred EEe
Confidence 544
No 225
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=4.1e-14 Score=114.63 Aligned_cols=202 Identities=11% Similarity=0.122 Sum_probs=134.2
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC---CCeEEEEeccCceeeeeeecccccEEE
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI---DTTCTIWDIEREAVDTQLIAHDKEVYD 90 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~ 90 (253)
.|.++|.+. ...+.+..+. ..+.+.+|+ |+++.|+..+. +..|++||+.+++.. .+..+.+.+..
T Consensus 183 ~l~~~d~dg-----~~~~~lt~~~-----~~v~~p~wS-pDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~ 250 (435)
T PRK05137 183 RLAIMDQDG-----ANVRYLTDGS-----SLVLTPRFS-PNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFA 250 (435)
T ss_pred EEEEECCCC-----CCcEEEecCC-----CCeEeeEEC-CCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccC
Confidence 677888765 3344555666 689999999 78988887653 468999999887643 34445667788
Q ss_pred EEec-CCCeEE-EEeCCCc--EEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC--CeEEEEECCCCC
Q 035558 91 IAWG-GVGVFA-SVSADGS--VRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS--AKVVVLDIRFPT 164 (253)
Q Consensus 91 ~~~~-~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~--~~i~~~d~~~~~ 164 (253)
.+|+ +++.|+ +.+.++. |.+||+.++.... + ..+........|+| +++.|+..+..+ ..|+++|+....
T Consensus 251 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-L---t~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~ 325 (435)
T PRK05137 251 PRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-L---TDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSN 325 (435)
T ss_pred cEECCCCCEEEEEEecCCCceEEEEECCCCceEE-c---cCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCC
Confidence 8999 888765 5555655 7777888765322 2 22333566789999 888888766432 238888876543
Q ss_pred CCeeeecccccceeEEEEecCCCCeEEEecCC---CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558 165 LPVVELQRHQASVNAIAWAPHSSCHICTAGDD---SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA 241 (253)
Q Consensus 165 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 241 (253)
...+..+...+....|+|+| +.|+..+.+ ..|.+||+...... . ......+..+.|+|+|+.++.
T Consensus 326 --~~~lt~~~~~~~~~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~~~~~--------~-lt~~~~~~~p~~spDG~~i~~ 393 (435)
T PRK05137 326 --PRRISFGGGRYSTPVWSPRG-DLIAFTKQGGGQFSIGVMKPDGSGER--------I-LTSGFLVEGPTWAPNGRVIMF 393 (435)
T ss_pred --eEEeecCCCcccCeEECCCC-CEEEEEEcCCCceEEEEEECCCCceE--------e-ccCCCCCCCCeECCCCCEEEE
Confidence 34444445556778999999 466655432 36778887554321 1 112234677899999987765
Q ss_pred EEc
Q 035558 242 IAF 244 (253)
Q Consensus 242 ~~~ 244 (253)
.+.
T Consensus 394 ~~~ 396 (435)
T PRK05137 394 FRQ 396 (435)
T ss_pred EEc
Confidence 443
No 226
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.5e-16 Score=120.99 Aligned_cols=232 Identities=20% Similarity=0.207 Sum_probs=159.4
Q ss_pred CCCceEEeecC--cEEEEEccCCccccce-eeeecCCCCccccCCeeEEEecCC-CCCEEEEEeCCCeEEEEeccCce-e
Q 035558 3 QKPDLLATSSD--FLRVWRISDEDRRVEL-KSLLNGNKNSEYCGPLTSFDWNEA-EPRRIGTSSIDTTCTIWDIEREA-V 77 (253)
Q Consensus 3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~-~ 77 (253)
+.|..|+++++ .|.+||.... +. .....+|. ..|..-.|-|. +..-+++.+.||.+++=.+.... .
T Consensus 152 ~~Gd~l~SgSDD~~vv~WdW~~~----~~~l~f~SGH~-----~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~ 222 (559)
T KOG1334|consen 152 QRGDVLASGSDDLQVVVWDWVSG----SPKLSFESGHC-----NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYV 222 (559)
T ss_pred ccCceeeccCccceEEeehhhcc----Ccccccccccc-----cchhhhhccCCCCCcCceeccccCceeeeeeccccce
Confidence 46889999997 9999999875 33 34445777 56666667753 34568899999999987654332 2
Q ss_pred --eeeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCC---CeeEEEeeCCCCCEEEEEEe
Q 035558 78 --DTQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDT---PLVRLGWNKQDPRYMATIIM 150 (253)
Q Consensus 78 --~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~l~~~~~ 150 (253)
...+..|.++|..++.- ....|.+++.|+.+.-+|+++......+......+. ....++.+|.+.+.+++++.
T Consensus 223 e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~ 302 (559)
T KOG1334|consen 223 ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGS 302 (559)
T ss_pred ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCCh
Confidence 33455799999999998 788999999999999999998754333332222222 44555556655555666655
Q ss_pred CCCeEEEEECCCCCC-----------------------------------------------------------------
Q 035558 151 DSAKVVVLDIRFPTL----------------------------------------------------------------- 165 (253)
Q Consensus 151 ~~~~i~~~d~~~~~~----------------------------------------------------------------- 165 (253)
+.. +++||.+...+
T Consensus 303 dqf-~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~ 381 (559)
T KOG1334|consen 303 DQF-ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQ 381 (559)
T ss_pred hhh-hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhh
Confidence 555 55555543211
Q ss_pred Ceee-eccccc--ceeEEE-EecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558 166 PVVE-LQRHQA--SVNAIA-WAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA 241 (253)
Q Consensus 166 ~~~~-~~~~~~--~i~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 241 (253)
.++. +++|.. .|..+- |-|.. .|+++||.-|.|.||+-.+++... ...+-..-|++|.=+|.-+.|++
T Consensus 382 ~~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCGhIFiW~K~t~eii~-------~MegDr~VVNCLEpHP~~PvLAs 453 (559)
T KOG1334|consen 382 YVKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCGHIFIWDKKTGEIIR-------FMEGDRHVVNCLEPHPHLPVLAS 453 (559)
T ss_pred ccchhhcccccccccceeeeccCcc-ceEEecCccceEEEEecchhHHHH-------HhhcccceEeccCCCCCCchhhc
Confidence 0111 344433 244443 34555 599999999999999998877543 44444448999999999998889
Q ss_pred EEcCCcEEEEE
Q 035558 242 IAFSTKLQILR 252 (253)
Q Consensus 242 ~~~~~~i~vw~ 252 (253)
+|-|..|+||-
T Consensus 454 SGid~DVKIWT 464 (559)
T KOG1334|consen 454 SGIDHDVKIWT 464 (559)
T ss_pred cCCccceeeec
Confidence 99999999994
No 227
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=9.1e-15 Score=118.07 Aligned_cols=203 Identities=15% Similarity=0.141 Sum_probs=132.1
Q ss_pred CCceEEeec----C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe-CCCeEEEE--eccCc
Q 035558 4 KPDLLATSS----D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS-IDTTCTIW--DIERE 75 (253)
Q Consensus 4 ~~~~l~~~~----~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vw--d~~~~ 75 (253)
+++.|+..+ + .|++||+.++ ..+.+..+.+|. ..++|+ |+++.|+.+. .+|.+.|| |+.++
T Consensus 214 DG~~la~~s~~~~~~~i~i~dl~tg--~~~~l~~~~g~~--------~~~~wS-PDG~~La~~~~~~g~~~Iy~~d~~~~ 282 (429)
T PRK01742 214 DGSKLAYVSFENKKSQLVVHDLRSG--ARKVVASFRGHN--------GAPAFS-PDGSRLAFASSKDGVLNIYVMGANGG 282 (429)
T ss_pred CCCEEEEEEecCCCcEEEEEeCCCC--ceEEEecCCCcc--------CceeEC-CCCCEEEEEEecCCcEEEEEEECCCC
Confidence 555566543 2 6999999874 112233344433 368999 8898887764 67765554 66555
Q ss_pred eeeeeeecccccEEEEEec-CCCeEEEEe-CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC
Q 035558 76 AVDTQLIAHDKEVYDIAWG-GVGVFASVS-ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA 153 (253)
Q Consensus 76 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 153 (253)
+ ...+..+...+....|+ +++.++.++ .+|...+|++.......... .+.. ....|+| +++.+++.+.+ .
T Consensus 283 ~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l---~~~~--~~~~~Sp-DG~~ia~~~~~-~ 354 (429)
T PRK01742 283 T-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV---GGRG--YSAQISA-DGKTLVMINGD-N 354 (429)
T ss_pred C-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe---cCCC--CCccCCC-CCCEEEEEcCC-C
Confidence 4 34455566778899999 888776555 57888999876543222221 1221 4578999 88888887764 4
Q ss_pred eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEc
Q 035558 154 KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWS 233 (253)
Q Consensus 154 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 233 (253)
+.+||+.++.. ..+... .....+.|+|+| ++|+.++.++.+.+|++....... ...+..|.+.+...+|+
T Consensus 355 -i~~~Dl~~g~~--~~lt~~-~~~~~~~~sPdG-~~i~~~s~~g~~~~l~~~~~~G~~-----~~~l~~~~g~~~~p~ws 424 (429)
T PRK01742 355 -VVKQDLTSGST--EVLSST-FLDESPSISPNG-IMIIYSSTQGLGKVLQLVSADGRF-----KARLPGSDGQVKFPAWS 424 (429)
T ss_pred -EEEEECCCCCe--EEecCC-CCCCCceECCCC-CEEEEEEcCCCceEEEEEECCCCc-----eEEccCCCCCCCCcccC
Confidence 77799987652 222211 123567899999 689988889999988874322111 13555677888999999
Q ss_pred CC
Q 035558 234 SS 235 (253)
Q Consensus 234 ~~ 235 (253)
|-
T Consensus 425 p~ 426 (429)
T PRK01742 425 PY 426 (429)
T ss_pred CC
Confidence 85
No 228
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.64 E-value=1e-13 Score=100.58 Aligned_cols=224 Identities=13% Similarity=0.157 Sum_probs=155.4
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecC--CCCC-EEEEEeCCCeEEEEeccCceeeeeeecc---c--
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNE--AEPR-RIGTSSIDTTCTIWDIEREAVDTQLIAH---D-- 85 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~-- 85 (253)
.+.+|++... + .....+++.-.. +.++.+.|.. .++. .++-+..+|.|.++..........+++- .
T Consensus 47 kl~Lys~~d~-~-~~~l~~~q~~dt----s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~ 120 (339)
T KOG0280|consen 47 KLHLYSLEDM-K-LSPLDTLQCTDT----STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKIS 120 (339)
T ss_pred ceEEEeeccc-c-cCccceeeeecc----cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhh
Confidence 4677877664 1 111222222111 5677777752 3444 5666777899999987655433333321 1
Q ss_pred -ccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCC
Q 035558 86 -KEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFP 163 (253)
Q Consensus 86 -~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~ 163 (253)
....++.|+ .+..++++-.+|.+.+-+..... ......-..|+-++..++|+..+.+++.+|+.|+. +..||+|.+
T Consensus 121 ~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-l~~~D~R~p 198 (339)
T KOG0280|consen 121 VVEALSLDISTSGTKIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-LSCWDIRIP 198 (339)
T ss_pred heeeeEEEeeccCceEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCceEEecCCCce-EEEEEecCC
Confidence 123466777 77889999999999966554432 22223445677788999999888899999999998 999999965
Q ss_pred CCCeee-ecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC-ceEE
Q 035558 164 TLPVVE-LQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP-DWVA 241 (253)
Q Consensus 164 ~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~ 241 (253)
...+.. .+.|...|.++.-+|..+.++++|+.|-.|++||.++..+|. ....-.+.|+.+.++|.-. .+++
T Consensus 199 ~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl-------~~~~v~GGVWRi~~~p~~~~~lL~ 271 (339)
T KOG0280|consen 199 KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL-------FKAKVGGGVWRIKHHPEIFHRLLA 271 (339)
T ss_pred cceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcc-------ccCccccceEEEEecchhhhHHHH
Confidence 544443 566889999999999877899999999999999999888775 4445568999999999754 2345
Q ss_pred EEcCCcEEEEE
Q 035558 242 IAFSTKLQILR 252 (253)
Q Consensus 242 ~~~~~~i~vw~ 252 (253)
++.-+..+|.+
T Consensus 272 ~CMh~G~ki~~ 282 (339)
T KOG0280|consen 272 ACMHNGAKILD 282 (339)
T ss_pred HHHhcCceEEE
Confidence 55555555554
No 229
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.62 E-value=1.6e-13 Score=101.61 Aligned_cols=240 Identities=14% Similarity=0.207 Sum_probs=163.5
Q ss_pred CCCceEEeecC--cEEEEEccCCc-cccceeeeecCCCCc-------cccCCeeEEEecCC-CCCEEEEEeCCCeEEEEe
Q 035558 3 QKPDLLATSSD--FLRVWRISDED-RRVELKSLLNGNKNS-------EYCGPLTSFDWNEA-EPRRIGTSSIDTTCTIWD 71 (253)
Q Consensus 3 ~~~~~l~~~~~--~v~iw~~~~~~-~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd 71 (253)
..|++||+|.. .|.++.-.... .++.....++.|... +....|..+.|.++ +...++..+.|.+|++|.
T Consensus 35 ~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWK 114 (433)
T KOG1354|consen 35 HYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWK 114 (433)
T ss_pred cccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeee
Confidence 46899999985 88888765431 234455666666522 12257888999843 345566777899999998
Q ss_pred ccCcee-----------------------------------eeee-ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcC
Q 035558 72 IEREAV-----------------------------------DTQL-IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLR 114 (253)
Q Consensus 72 ~~~~~~-----------------------------------~~~~-~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~ 114 (253)
+..... .+.+ .+|+--|.++.++ +...++++ .|-.|.+|+++
T Consensus 115 i~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnle 193 (433)
T KOG1354|consen 115 IRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWNLE 193 (433)
T ss_pred eeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cceeeeecccc
Confidence 754210 0111 2577889999999 88888875 57789999998
Q ss_pred CCCCeeeeeccCCC-----CCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCC-----eee----------ecccc
Q 035558 115 DKEHSTIIYESSEP-----DTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLP-----VVE----------LQRHQ 174 (253)
Q Consensus 115 ~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~-----~~~----------~~~~~ 174 (253)
-....-.+.....+ ...|++..|+|...+.++-++..|. |++.|+|....+ +.. +..--
T Consensus 194 i~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt-IrLcDmR~~aLCd~hsKlfEepedp~~rsffseiI 272 (433)
T KOG1354|consen 194 IIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT-IRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEII 272 (433)
T ss_pred ccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc-EEEeechhhhhhcchhhhhccccCCcchhhHHHHh
Confidence 55432222222221 1368899999988888888888888 999999954321 111 11112
Q ss_pred cceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC------------CCce---eEEEEcCCCCce
Q 035558 175 ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA------------GAEI---EQLQWSSSQPDW 239 (253)
Q Consensus 175 ~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------------~~~v---~~~~~~~~~~~~ 239 (253)
..|..+.|+++| +++++-.. -+|++||+.....|. ....-| ...| ..++|+-++.++
T Consensus 273 sSISDvKFs~sG-ryilsRDy-ltvk~wD~nme~~pv------~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v 344 (433)
T KOG1354|consen 273 SSISDVKFSHSG-RYILSRDY-LTVKLWDLNMEAKPV------ETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYV 344 (433)
T ss_pred hhhhceEEccCC-cEEEEecc-ceeEEEeccccCCcc------eEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceE
Confidence 468889999999 78888653 689999998776665 222222 1222 468899999899
Q ss_pred EEEEcCCcEEEEE
Q 035558 240 VAIAFSTKLQILR 252 (253)
Q Consensus 240 ~~~~~~~~i~vw~ 252 (253)
++|+..+.+++++
T Consensus 345 ~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 345 MTGSYNNVFRVFN 357 (433)
T ss_pred ecccccceEEEec
Confidence 9999999999986
No 230
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.62 E-value=2e-13 Score=98.01 Aligned_cols=149 Identities=17% Similarity=0.393 Sum_probs=100.6
Q ss_pred eEEEecCCCCCEEEEEeC----------CCeEEEEeccC-ceeeeeeec-ccccEEEEEec-CCCeEEEE--eCCCcEEE
Q 035558 46 TSFDWNEAEPRRIGTSSI----------DTTCTIWDIER-EAVDTQLIA-HDKEVYDIAWG-GVGVFASV--SADGSVRV 110 (253)
Q Consensus 46 ~~~~~~~~~~~~l~~~~~----------dg~i~vwd~~~-~~~~~~~~~-~~~~v~~~~~~-~~~~l~~~--~~dg~i~i 110 (253)
..+.|+ ++|+.|+.-.. -|...+|.++. +.....+.- ..++|.+++|+ +++.|++. ..++.|.+
T Consensus 9 ~~~~W~-~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQ-PSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEec-ccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 367888 77776654432 12344555532 223333432 34579999999 88876554 46789999
Q ss_pred EEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC--CeEEEEECCCCCCCeeeecccccceeEEEEecCCCC
Q 035558 111 FDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS--AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSC 188 (253)
Q Consensus 111 ~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 188 (253)
||++.. .+.... ...+..+.|+| +|+++++++.++ +.|.+||.++.+. +.... | ..++.++|+|+| +
T Consensus 88 yd~~~~----~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~-i~~~~-~-~~~t~~~WsPdG-r 156 (194)
T PF08662_consen 88 YDVKGK----KIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKK-ISTFE-H-SDATDVEWSPDG-R 156 (194)
T ss_pred EcCccc----EeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEE-eeccc-c-CcEEEEEEcCCC-C
Confidence 999732 222222 33778999999 999999987542 2499999996442 44433 3 347899999999 6
Q ss_pred eEEEecC------CCcEEEEeccC
Q 035558 189 HICTAGD------DSQALIWDLSS 206 (253)
Q Consensus 189 ~l~~~~~------dg~i~iwd~~~ 206 (253)
+|+++.. |+.++||+...
T Consensus 157 ~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 157 YLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEEEEEeccceeccccEEEEEecC
Confidence 8887763 88999999864
No 231
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.62 E-value=3.3e-14 Score=118.35 Aligned_cols=190 Identities=17% Similarity=0.201 Sum_probs=142.6
Q ss_pred CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558 4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI 82 (253)
Q Consensus 4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 82 (253)
+..+....++ .+.+||.... ......+..+.... ....-+-++ .+.-++++|+.-+.|.+|+....+.-..+.
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~----~~~~~i~~~er~~l-~~~~~~g~s-~~~~~i~~gsv~~~iivW~~~~dn~p~~l~ 172 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNS----SVLSKIQSDERCTL-YSSLIIGDS-AEELYIASGSVFGEIIVWKPHEDNKPIRLK 172 (967)
T ss_pred cceEEEEEcCceEEEEecccC----ceehhcCCCceEEE-EeEEEEecc-CcEEEEEeccccccEEEEeccccCCcceec
Confidence 3444445555 9999998875 44444433321000 122223345 667789999999999999987443333578
Q ss_pred cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558 83 AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR 161 (253)
Q Consensus 83 ~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~ 161 (253)
+|++.|.++.|+ +++++++.|+|.++++|++.+.+... ....+|...+..+.|.| + .+++++.|.. .++|+..
T Consensus 173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~-n--~i~t~gedct-crvW~~~ 246 (967)
T KOG0974|consen 173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLP-N--RIITVGEDCT-CRVWGVN 246 (967)
T ss_pred ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEecc-c--eeEEeccceE-EEEEecc
Confidence 999999999999 99999999999999999999987443 23447778999999998 4 9999999998 9999765
Q ss_pred CCCCCeeeecccc-cceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558 162 FPTLPVVELQRHQ-ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 162 ~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
... +..+..|. ..|..++..+.. ..++|++.|+.+++||+....
T Consensus 247 ~~~--l~~y~~h~g~~iw~~~~~~~~-~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 247 GTQ--LEVYDEHSGKGIWKIAVPIGV-IIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred cce--ehhhhhhhhcceeEEEEcCCc-eEEEeeccCcchhhhhhhccc
Confidence 433 44666665 479999999987 599999999999999987643
No 232
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=6.7e-14 Score=109.95 Aligned_cols=190 Identities=18% Similarity=0.281 Sum_probs=147.1
Q ss_pred CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
++-+++.+|++ .|+-++++.+ +.+..+.... +.++++..+ +...+|++|+.+|.|..||.+....+..+
T Consensus 144 ~scDly~~gsg~evYRlNLEqG----rfL~P~~~~~-----~~lN~v~in-~~hgLla~Gt~~g~VEfwDpR~ksrv~~l 213 (703)
T KOG2321|consen 144 PSCDLYLVGSGSEVYRLNLEQG----RFLNPFETDS-----GELNVVSIN-EEHGLLACGTEDGVVEFWDPRDKSRVGTL 213 (703)
T ss_pred CCccEEEeecCcceEEEEcccc----cccccccccc-----ccceeeeec-CccceEEecccCceEEEecchhhhhheee
Confidence 34567777776 9999999998 7777777766 789999999 77789999999999999999877655444
Q ss_pred e------cccc-----cEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE
Q 035558 82 I------AHDK-----EVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII 149 (253)
Q Consensus 82 ~------~~~~-----~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 149 (253)
. .|.+ .|+++.|+ ++-.+++|..+|.+.|||+++.++. +...+..+.+|..+.|.+.++. -.+.+
T Consensus 214 ~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl--~~kdh~~e~pi~~l~~~~~~~q-~~v~S 290 (703)
T KOG2321|consen 214 DAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL--LVKDHGYELPIKKLDWQDTDQQ-NKVVS 290 (703)
T ss_pred ecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce--eecccCCccceeeecccccCCC-ceEEe
Confidence 3 2333 49999999 7999999999999999999998853 3333455569999999884333 22334
Q ss_pred eCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558 150 MDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 150 ~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
.|...++|||-.+++. ...+.. ...++.+|+-|+++ +++++-.++.+..|-+....
T Consensus 291 ~Dk~~~kiWd~~~Gk~-~asiEp-t~~lND~C~~p~sG-m~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 291 MDKRILKIWDECTGKP-MASIEP-TSDLNDFCFVPGSG-MFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred cchHHhhhcccccCCc-eeeccc-cCCcCceeeecCCc-eEEEecCCCcceeEEccccC
Confidence 4555599999988763 555553 45699999999985 99999999999888777644
No 233
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.61 E-value=8.2e-13 Score=106.82 Aligned_cols=204 Identities=15% Similarity=0.182 Sum_probs=132.8
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC---CeEEEEeccCceeeeeeecccccEEE
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID---TTCTIWDIEREAVDTQLIAHDKEVYD 90 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~ 90 (253)
.|.++|.+.. . .+.+..+. ..+...+|+ +++++|+.+..+ ..|++||+.+++... +..+...+.+
T Consensus 171 ~l~~~d~~g~----~-~~~l~~~~-----~~~~~p~~S-pdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~ 238 (417)
T TIGR02800 171 ELQVADYDGA----N-PQTITRSR-----EPILSPAWS-PDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGA 238 (417)
T ss_pred eEEEEcCCCC----C-CEEeecCC-----CceecccCC-CCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccc
Confidence 5778887653 2 33344454 568888999 899988877643 479999998875433 3335556677
Q ss_pred EEec-CCCeEE-EEeCCC--cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC--eEEEEECCCCC
Q 035558 91 IAWG-GVGVFA-SVSADG--SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA--KVVVLDIRFPT 164 (253)
Q Consensus 91 ~~~~-~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~--~i~~~d~~~~~ 164 (253)
++|+ +++.|+ +.+.++ .|++||+.++.... +. .+........|+| +++.|+..+..++ .|+++|+.+.+
T Consensus 239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~---~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~ 313 (417)
T TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LT---NGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGE 313 (417)
T ss_pred eEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-CC---CCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCC
Confidence 8999 887665 444444 58888988765322 21 2222445678999 8888776654332 37777877543
Q ss_pred CCeeeecccccceeEEEEecCCCCeEEEecCCC---cEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558 165 LPVVELQRHQASVNAIAWAPHSSCHICTAGDDS---QALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA 241 (253)
Q Consensus 165 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 241 (253)
...+..+......+.|+|++ ++++.++.++ .|.+||+.+.... .... ........|+|+++.++.
T Consensus 314 --~~~l~~~~~~~~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~~~~~--------~l~~-~~~~~~p~~spdg~~l~~ 381 (417)
T TIGR02800 314 --VRRLTFRGGYNASPSWSPDG-DLIAFVHREGGGFNIAVMDLDGGGER--------VLTD-TGLDESPSFAPNGRMILY 381 (417)
T ss_pred --EEEeecCCCCccCeEECCCC-CEEEEEEccCCceEEEEEeCCCCCeE--------EccC-CCCCCCceECCCCCEEEE
Confidence 34444455667788999999 5777776665 7888888764321 1111 122345689999988876
Q ss_pred EEcCC
Q 035558 242 IAFST 246 (253)
Q Consensus 242 ~~~~~ 246 (253)
.+.++
T Consensus 382 ~~~~~ 386 (417)
T TIGR02800 382 ATTRG 386 (417)
T ss_pred EEeCC
Confidence 66554
No 234
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.61 E-value=7.3e-15 Score=108.11 Aligned_cols=215 Identities=15% Similarity=0.299 Sum_probs=152.0
Q ss_pred CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCE-EEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRR-IGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
++|+++|++++ .+.|-|..+- +..+.+..- +.|.-+.|. .+..+ |.....++.|.+|++...+-...
T Consensus 18 p~g~yiAs~~~yrlviRd~~tl----q~~qlf~cl------dki~yieW~-ads~~ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 18 PCGNYIASLSRYRLVIRDSETL----QLHQLFLCL------DKIVYIEWK-ADSCHILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred CCCCeeeeeeeeEEEEeccchh----hHHHHHHHH------HHhhheeee-ccceeeeeeeeccceEEEEEeecceeEEE
Confidence 68899999999 8888888774 544444332 467788998 66554 45567888999999999888888
Q ss_pred eecccccEEEEEec-CCC-eEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558 81 LIAHDKEVYDIAWG-GVG-VFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL 158 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~ 158 (253)
+.....++.+++|+ +++ .|.+...|-.|.+|.+.+.+.... . ..+..+..++|+| ++++.+.++..+. ...+
T Consensus 87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~--~--~pK~~~kg~~f~~-dg~f~ai~sRrDC-kdyv 160 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL--P--HPKTNVKGYAFHP-DGQFCAILSRRDC-KDYV 160 (447)
T ss_pred eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe--c--ccccCceeEEECC-CCceeeeeecccH-HHHH
Confidence 88778899999999 885 566677799999999998873322 2 2233568899999 9999998887654 3333
Q ss_pred ECCCCC--CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC
Q 035558 159 DIRFPT--LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ 236 (253)
Q Consensus 159 d~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 236 (253)
.+..-+ ..+..+....-..+.+.|+||| ..|+ +||---..+ .....-+-.+..++|+|.+
T Consensus 161 ~i~~c~~W~ll~~f~~dT~DltgieWsPdg-~~la---------Vwd~~Leyk--------v~aYe~~lG~k~v~wsP~~ 222 (447)
T KOG4497|consen 161 QISSCKAWILLKEFKLDTIDLTGIEWSPDG-NWLA---------VWDNVLEYK--------VYAYERGLGLKFVEWSPCN 222 (447)
T ss_pred HHHhhHHHHHHHhcCCCcccccCceECCCC-cEEE---------Eecchhhhe--------eeeeeeccceeEEEecccc
Confidence 332111 1234444455567889999999 4554 455332111 1223334678899999999
Q ss_pred CceEEEEcCCcEEEEE
Q 035558 237 PDWVAIAFSTKLQILR 252 (253)
Q Consensus 237 ~~~~~~~~~~~i~vw~ 252 (253)
+.+..++.|+.+||.+
T Consensus 223 qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 223 QFLAVGSYDQMLRVLN 238 (447)
T ss_pred ceEEeeccchhhhhhc
Confidence 8777888999888753
No 235
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.60 E-value=9.2e-15 Score=117.97 Aligned_cols=237 Identities=19% Similarity=0.327 Sum_probs=168.6
Q ss_pred CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCC--CCCEEEEEeCCCeEEEEeccCce---ee
Q 035558 5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEA--EPRRIGTSSIDTTCTIWDIEREA---VD 78 (253)
Q Consensus 5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~---~~ 78 (253)
|+=+|.++. .+.+-|++....++..+.-+.. -.|-.+.|+|. ....+++.+ ...-.+|++.... ..
T Consensus 36 grdi~lAsr~gl~i~dld~p~~ppr~l~h~tp-------w~vad~qws~h~a~~~wiVsts-~qkaiiwnlA~ss~~aIe 107 (1081)
T KOG0309|consen 36 GRDIVLASRQGLYIIDLDDPFTPPRWLHHITP-------WQVADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKSSSNAIE 107 (1081)
T ss_pred cchhhhhhhcCeEEEeccCCCCCceeeeccCc-------chhcceecccCCCCceeEEecC-cchhhhhhhhcCCccceE
Confidence 444555665 7888888775333343333333 23667788752 233455444 5566789986432 33
Q ss_pred eeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558 79 TQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV 156 (253)
Q Consensus 79 ~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~ 156 (253)
..+.+|...|+++.|+ ....+++++.|-.+..||+++... .++...........++|+-.++..+|+... ..|.
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~p~vlasshg--~~i~ 183 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKDPNVLASSHG--NDIF 183 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccCceeeecccCcchhhhccC--CceE
Confidence 4556899999999999 888999999999999999999873 333333444467789999877777775433 3399
Q ss_pred EEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC-------------------------
Q 035558 157 VLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV------------------------- 211 (253)
Q Consensus 157 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------------------------- 211 (253)
+||++.+..++..+++|...|++++|+......+.+++.||+|+.||........
T Consensus 184 vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~m 263 (1081)
T KOG0309|consen 184 VWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIM 263 (1081)
T ss_pred EEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEec
Confidence 9999999999999999999999999988655588999999999999987543100
Q ss_pred -----------------------CCCCCCeeeccCCCceeEEEEcCCCC----------ceEEEEcCCcEEEEEC
Q 035558 212 -----------------------EGGLDPILAYTAGAEIEQLQWSSSQP----------DWVAIAFSTKLQILRV 253 (253)
Q Consensus 212 -----------------------~~~~~~~~~~~~~~~v~~~~~~~~~~----------~~~~~~~~~~i~vw~l 253 (253)
........+.+|...|....|-..+. .|++-+.|..+++|.+
T Consensus 264 p~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI 338 (1081)
T KOG0309|consen 264 PMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPI 338 (1081)
T ss_pred cccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeec
Confidence 00122345667888887777754332 5889999999999975
No 236
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.3e-12 Score=105.56 Aligned_cols=204 Identities=10% Similarity=0.092 Sum_probs=127.4
Q ss_pred CCCceEEeec----C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEE-eCCC--eEEEEeccC
Q 035558 3 QKPDLLATSS----D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTS-SIDT--TCTIWDIER 74 (253)
Q Consensus 3 ~~~~~l~~~~----~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg--~i~vwd~~~ 74 (253)
++|+.|+..+ + .+.+|++.++ ..+.+..+.+ .+....|+ |+++.|+.. +.+| .|++||+++
T Consensus 208 PDG~~la~~s~~~g~~~i~i~dl~~G--~~~~l~~~~~--------~~~~~~~S-PDG~~La~~~~~~g~~~I~~~d~~t 276 (429)
T PRK03629 208 PDGSKLAYVTFESGRSALVIQTLANG--AVRQVASFPR--------HNGAPAFS-PDGSKLAFALSKTGSLNLYVMDLAS 276 (429)
T ss_pred CCCCEEEEEEecCCCcEEEEEECCCC--CeEEccCCCC--------CcCCeEEC-CCCCEEEEEEcCCCCcEEEEEECCC
Confidence 3455555432 3 8999999775 1122222333 33468899 788877754 4444 589999988
Q ss_pred ceeeeeeecccccEEEEEec-CCCeEEEEeCC-CcEEEE--EcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558 75 EAVDTQLIAHDKEVYDIAWG-GVGVFASVSAD-GSVRVF--DLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM 150 (253)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d-g~i~i~--d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 150 (253)
++... +..+...+....|+ +++.|+..+.+ +...+| |+.+++.. .+.. .........|+| +++.|+..+.
T Consensus 277 g~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~---~~~~~~~~~~Sp-DG~~Ia~~~~ 350 (429)
T PRK03629 277 GQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW---EGSQNQDADVSS-DGKFMVMVSS 350 (429)
T ss_pred CCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec---CCCCccCEEECC-CCCEEEEEEc
Confidence 76544 33344567889999 99988777654 444454 66655422 2221 122456788999 8888887665
Q ss_pred CC--CeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCc---EEEEeccCCCCCCCCCCCCeeeccCCC
Q 035558 151 DS--AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQ---ALIWDLSSMGQPVEGGLDPILAYTAGA 225 (253)
Q Consensus 151 ~~--~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~ 225 (253)
++ ..|.+||+.++. ...+.. ........|+||| +.|+.++.++. +.++++.... . ..+..|..
T Consensus 351 ~~g~~~I~~~dl~~g~--~~~Lt~-~~~~~~p~~SpDG-~~i~~~s~~~~~~~l~~~~~~G~~-~-------~~l~~~~~ 418 (429)
T PRK03629 351 NGGQQHIAKQDLATGG--VQVLTD-TFLDETPSIAPNG-TMVIYSSSQGMGSVLNLVSTDGRF-K-------ARLPATDG 418 (429)
T ss_pred cCCCceEEEEECCCCC--eEEeCC-CCCCCCceECCCC-CEEEEEEcCCCceEEEEEECCCCC-e-------EECccCCC
Confidence 43 238889987754 333332 1223467899999 57877776664 5666664332 2 24556778
Q ss_pred ceeEEEEcCC
Q 035558 226 EIEQLQWSSS 235 (253)
Q Consensus 226 ~v~~~~~~~~ 235 (253)
.+...+|+|-
T Consensus 419 ~~~~p~Wsp~ 428 (429)
T PRK03629 419 QVKFPAWSPY 428 (429)
T ss_pred CcCCcccCCC
Confidence 8889999984
No 237
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.57 E-value=5.1e-12 Score=99.68 Aligned_cols=193 Identities=18% Similarity=0.256 Sum_probs=147.9
Q ss_pred CCCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEec------C-------------CCCCEEE
Q 035558 1 ECQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWN------E-------------AEPRRIG 59 (253)
Q Consensus 1 sp~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~-------------~~~~~l~ 59 (253)
+|+...++|... + .+++|+...+ +....+...... .+..++..|. | .+...++
T Consensus 1 ~~~~~~~~A~~~~~g~l~iw~t~~~----~~~~e~~p~~~~--s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lv 74 (541)
T KOG4547|consen 1 SPPALDYFALSTGDGRLRIWDTAKN----QLQQEFAPIASL--SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLV 74 (541)
T ss_pred CCchhheEeecCCCCeEEEEEccCc----eeeeeeccchhc--cCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEE
Confidence 577777888766 4 9999999886 555444432110 0333444442 1 1234688
Q ss_pred EEeCCCeEEEEeccCceeeeeee--cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEE
Q 035558 60 TSSIDTTCTIWDIEREAVDTQLI--AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLG 136 (253)
Q Consensus 60 ~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~ 136 (253)
-|...|.|.+|++..++....+. .|.+.|.++.++ +-..|.+++.|+.+..|+........ ........+.+++
T Consensus 75 lgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~---~~~~~~~~~~sl~ 151 (541)
T KOG4547|consen 75 LGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIR---IWKEQKPLVSSLC 151 (541)
T ss_pred eecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeee---eeccCCCccceEE
Confidence 89999999999999999887776 689999999999 88999999999999999998886333 3334444788999
Q ss_pred eeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecC-----CCCeEEEecCCCcEEEEeccCC
Q 035558 137 WNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPH-----SSCHICTAGDDSQALIWDLSSM 207 (253)
Q Consensus 137 ~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~ 207 (253)
.+| ++..+++++.. |++||+.+.+. +..|.+|.++|.++.|-.+ |..+|.+...+.-+.+|-+...
T Consensus 152 is~-D~~~l~~as~~---ik~~~~~~kev-v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 152 ISP-DGKILLTASRQ---IKVLDIETKEV-VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred EcC-CCCEEEeccce---EEEEEccCceE-EEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 999 79999988754 99999998664 8999999999999999887 6456666667888889987763
No 238
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.56 E-value=1.7e-12 Score=96.21 Aligned_cols=227 Identities=14% Similarity=0.228 Sum_probs=160.1
Q ss_pred CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEecc----Cceee
Q 035558 4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE----REAVD 78 (253)
Q Consensus 4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~----~~~~~ 78 (253)
+..++....| ++|||--.... +....+..... .++++++++ ++...|+.|-.+|++.-+.+. .....
T Consensus 36 e~gv~~~s~drtvrv~lkrds~---q~wpsI~~~mP----~~~~~~~y~-~e~~~L~vg~~ngtvtefs~sedfnkm~~~ 107 (404)
T KOG1409|consen 36 EEGVISVSEDRTVRVWLKRDSG---QYWPSIYHYMP----SPCSAMEYV-SESRRLYVGQDNGTVTEFALSEDFNKMTFL 107 (404)
T ss_pred CCCeEEccccceeeeEEecccc---ccCchhhhhCC----CCceEeeee-ccceEEEEEEecceEEEEEhhhhhhhcchh
Confidence 3334444445 99999765431 22222222111 678999999 888899999999999888654 33455
Q ss_pred eeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558 79 TQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV 157 (253)
Q Consensus 79 ~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~ 157 (253)
+....|...+..+-|+ ....+++.+.|..+.---.+.+....-.... ...+.+.+.- .+..+|...+. |..
T Consensus 108 r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~----~~~t~~~~d~---~~~fvGd~~gq-vt~ 179 (404)
T KOG1409|consen 108 KDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE----TPASALQFDA---LYAFVGDHSGQ-ITM 179 (404)
T ss_pred hhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee----ccCCCCceee---EEEEecccccc-eEE
Confidence 5566899999999999 9999999999988766555555422111110 0112222221 13344444444 555
Q ss_pred EECCCCC-CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC
Q 035558 158 LDIRFPT-LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ 236 (253)
Q Consensus 158 ~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 236 (253)
-.+.... .++.++.+|.+.+.+++|.|.. ++|++|..|..+.+||+....... ....+|...|..+..-+.-
T Consensus 180 lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g~~------~el~gh~~kV~~l~~~~~t 252 (404)
T KOG1409|consen 180 LKLEQNGCQLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGRKGTA------YELQGHNDKVQALSYAQHT 252 (404)
T ss_pred EEEeecCCceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccCCccee------eeeccchhhhhhhhhhhhh
Confidence 4443322 4578899999999999999987 699999999999999998776544 6788999999999998888
Q ss_pred CceEEEEcCCcEEEEEC
Q 035558 237 PDWVAIAFSTKLQILRV 253 (253)
Q Consensus 237 ~~~~~~~~~~~i~vw~l 253 (253)
+.+++++.|+.|.+|++
T Consensus 253 ~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 253 RQLISCGEDGGIVVWNM 269 (404)
T ss_pred eeeeeccCCCeEEEEec
Confidence 88999999999999986
No 239
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.55 E-value=2.2e-13 Score=100.96 Aligned_cols=204 Identities=16% Similarity=0.240 Sum_probs=138.4
Q ss_pred cCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---eeeeeec-----ccccEEEEEec--CCCeEEEEeCCCcEEEE
Q 035558 42 CGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---VDTQLIA-----HDKEVYDIAWG--GVGVFASVSADGSVRVF 111 (253)
Q Consensus 42 ~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~-----~~~~v~~~~~~--~~~~l~~~~~dg~i~i~ 111 (253)
+.-|.+++++ .+...++++ .|=.|.+|+++-.. .+-.++. ...-|++..|+ ..+.|+-.+..|+|++.
T Consensus 164 tyhiNSIS~N-sD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 164 TYHINSISVN-SDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC 241 (433)
T ss_pred eeEeeeeeec-CccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence 3778999999 888888887 47789999987432 1222222 24578899999 77889999999999999
Q ss_pred EcCCCCC----eeeeeccCC---------CCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccccc---
Q 035558 112 DLRDKEH----STIIYESSE---------PDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQA--- 175 (253)
Q Consensus 112 d~~~~~~----~~~~~~~~~---------~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--- 175 (253)
|++.... .+....... .-..|..+.|++ +|+++++-.+- +|++||+.....|+..++-|..
T Consensus 242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~-sGryilsRDyl--tvk~wD~nme~~pv~t~~vh~~lr~ 318 (433)
T KOG1354|consen 242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH-SGRYILSRDYL--TVKLWDLNMEAKPVETYPVHEYLRS 318 (433)
T ss_pred echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc-CCcEEEEeccc--eeEEEeccccCCcceEEeehHhHHH
Confidence 9995421 111111111 113688899999 99999975543 4999999877778888776642
Q ss_pred ---------c---eeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCC---C---------CCCeeec----------
Q 035558 176 ---------S---VNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEG---G---------LDPILAY---------- 221 (253)
Q Consensus 176 ---------~---i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~---------~~~~~~~---------- 221 (253)
. -..++|+.++ .+++||+.....++|+...+...... . ..+....
T Consensus 319 kLc~lYEnD~IfdKFec~~sg~~-~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~ 397 (433)
T KOG1354|consen 319 KLCSLYENDAIFDKFECSWSGND-SYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEI 397 (433)
T ss_pred HHHHHhhccchhheeEEEEcCCc-ceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCcccccc
Confidence 1 2347888888 59999999999999996655421100 0 0011111
Q ss_pred -----cCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 222 -----TAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 222 -----~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
.....+...+|+|... .+|++.-+.+.++.
T Consensus 398 ~vd~ldf~kkilh~aWhp~en-~ia~aatnnlyif~ 432 (433)
T KOG1354|consen 398 SVDALDFRKKILHTAWHPKEN-SIAVAATNNLYIFQ 432 (433)
T ss_pred ccchhhhhhHHHhhccCCccc-eeeeeecCceEEec
Confidence 1123456778999986 66666666777763
No 240
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.55 E-value=1.2e-10 Score=91.52 Aligned_cols=241 Identities=12% Similarity=0.121 Sum_probs=147.1
Q ss_pred CCCCceEEeec---C--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe-CCCeEEEEeccC-
Q 035558 2 CQKPDLLATSS---D--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS-IDTTCTIWDIER- 74 (253)
Q Consensus 2 p~~~~~l~~~~---~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~- 74 (253)
|.+..+.++.. + .|..|++......++.+....... .....++++ +++++|+++. .+|.|.++++..
T Consensus 46 ~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g-----~~p~~i~~~-~~g~~l~vany~~g~v~v~~l~~~ 119 (345)
T PF10282_consen 46 PDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG-----SSPCHIAVD-PDGRFLYVANYGGGSVSVFPLDDD 119 (345)
T ss_dssp TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS-----SCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTT
T ss_pred eCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC-----CCcEEEEEe-cCCCEEEEEEccCCeEEEEEccCC
Confidence 44554555543 2 788888876323344444444222 345578998 7888888776 589999999976
Q ss_pred ceeeee---ee----------cccccEEEEEec-CCCeEEEEe-CCCcEEEEEcCCCCC-eee-eeccCCCCCCeeEEEe
Q 035558 75 EAVDTQ---LI----------AHDKEVYDIAWG-GVGVFASVS-ADGSVRVFDLRDKEH-STI-IYESSEPDTPLVRLGW 137 (253)
Q Consensus 75 ~~~~~~---~~----------~~~~~v~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~-~~~-~~~~~~~~~~i~~~~~ 137 (253)
+..... +. .......++.++ +++++++.. ....|.+|++..... ... .............++|
T Consensus 120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f 199 (345)
T PF10282_consen 120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF 199 (345)
T ss_dssp SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE
T ss_pred cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEE
Confidence 332221 11 112456789999 888777654 345799999987652 211 1112233447899999
Q ss_pred eCCCCCEEEEEEeCCCeEEEEECCCCCCCe---eeecc------cccceeEEEEecCCCCeEEE-ecCCCcEEEEeccCC
Q 035558 138 NKQDPRYMATIIMDSAKVVVLDIRFPTLPV---VELQR------HQASVNAIAWAPHSSCHICT-AGDDSQALIWDLSSM 207 (253)
Q Consensus 138 ~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~---~~~~~------~~~~i~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~ 207 (253)
+| +++++++.......|.++++......+ ..+.. .......++++|++ ++|++ ...+++|.+|++...
T Consensus 200 ~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg-~~lyvsnr~~~sI~vf~~d~~ 277 (345)
T PF10282_consen 200 SP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDG-RFLYVSNRGSNSISVFDLDPA 277 (345)
T ss_dssp -T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTS-SEEEEEECTTTEEEEEEECTT
T ss_pred cC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCC-CEEEEEeccCCEEEEEEEecC
Confidence 99 888888877776679999988322111 11111 11257789999999 56654 446789999999543
Q ss_pred CCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEE-cCCcEEEEEC
Q 035558 208 GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA-FSTKLQILRV 253 (253)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~vw~l 253 (253)
.... .............+.++++|++++++++. .++.|.+|++
T Consensus 278 ~g~l---~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 278 TGTL---TLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp TTTE---EEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred CCce---EEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 2111 00112222355589999999999888665 5678888863
No 241
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.55 E-value=1.1e-12 Score=103.44 Aligned_cols=187 Identities=12% Similarity=0.163 Sum_probs=146.4
Q ss_pred CCCCCEEEEEeCCCeEEEEeccCceeeeeeec---ccccEEEEEec---------------------CCCeEEEEeCCCc
Q 035558 52 EAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA---HDKEVYDIAWG---------------------GVGVFASVSADGS 107 (253)
Q Consensus 52 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~---------------------~~~~l~~~~~dg~ 107 (253)
|+...++|..+.||.+++|+...++..+.+.. -.+...+..|. +...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 46678999999999999999998876665542 12333444443 2346788888999
Q ss_pred EEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCC
Q 035558 108 VRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSS 187 (253)
Q Consensus 108 i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 187 (253)
|.+|+...++.... .....|.+.|.++.++. +...|.+++.|.. +..|+...... ..........+.+++.+||+
T Consensus 82 v~~ys~~~g~it~~-~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~-v~~~~~~~~~~-~~~~~~~~~~~~sl~is~D~- 156 (541)
T KOG4547|consen 82 VLLYSVAGGEITAK-LSTDKHYGNVNEILDAQ-RLGCIYSVGADLK-VVYILEKEKVI-IRIWKEQKPLVSSLCISPDG- 156 (541)
T ss_pred EEEEEecCCeEEEE-EecCCCCCcceeeeccc-ccCceEecCCcee-EEEEeccccee-eeeeccCCCccceEEEcCCC-
Confidence 99999998874333 33456777999999987 8889999999998 99999987553 67777788889999999998
Q ss_pred CeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC-----CCceEE-EEcCCcEEEEE
Q 035558 188 CHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS-----QPDWVA-IAFSTKLQILR 252 (253)
Q Consensus 188 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~-~~~~~~i~vw~ 252 (253)
..|++++ +.|++||+++.+... .+.+|.++|++++|... |.++++ ...+..+.+|.
T Consensus 157 ~~l~~as--~~ik~~~~~~kevv~-------~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 157 KILLTAS--RQIKVLDIETKEVVI-------TFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred CEEEecc--ceEEEEEccCceEEE-------EecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence 5888887 689999999987654 88899999999999877 677775 44555666664
No 242
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.9e-11 Score=99.27 Aligned_cols=202 Identities=13% Similarity=0.117 Sum_probs=124.0
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC---CeEEEEeccCceeeeeeecccccEEE
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID---TTCTIWDIEREAVDTQLIAHDKEVYD 90 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~ 90 (253)
.|.++|.+.. . ...+..+. ..+....|+ |+++.|+..+.+ ..|.+||+.+++... +....+.+..
T Consensus 180 ~l~~~d~~g~----~-~~~l~~~~-----~~~~~p~wS-pDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~ 247 (430)
T PRK00178 180 TLQRSDYDGA----R-AVTLLQSR-----EPILSPRWS-PDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGA 247 (430)
T ss_pred EEEEECCCCC----C-ceEEecCC-----CceeeeeEC-CCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCC
Confidence 4777777653 2 33344444 678899999 888888766533 369999998876433 3223344557
Q ss_pred EEec-CCCeEE-EEeCCC--cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC-C-eEEEEECCCCC
Q 035558 91 IAWG-GVGVFA-SVSADG--SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS-A-KVVVLDIRFPT 164 (253)
Q Consensus 91 ~~~~-~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-~-~i~~~d~~~~~ 164 (253)
.+|+ +++.|+ +...+| .|.++|+.++.... +. .+........|+| +++.++..+..+ . .|+++|+.+++
T Consensus 248 ~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt---~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~ 322 (430)
T PRK00178 248 PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VT---NHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGR 322 (430)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cc---cCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCC
Confidence 8999 888776 444555 58888998775322 21 2233456678999 788777665432 2 37777876654
Q ss_pred CCeeeecccccceeEEEEecCCCCeEEEec-CCC--cEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558 165 LPVVELQRHQASVNAIAWAPHSSCHICTAG-DDS--QALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA 241 (253)
Q Consensus 165 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 241 (253)
...+...........|+|++. .++..+ .++ .|.++|+.++.... +. .........|+|+|+.++.
T Consensus 323 --~~~lt~~~~~~~~~~~Spdg~-~i~~~~~~~~~~~l~~~dl~tg~~~~--------lt-~~~~~~~p~~spdg~~i~~ 390 (430)
T PRK00178 323 --AERVTFVGNYNARPRLSADGK-TLVMVHRQDGNFHVAAQDLQRGSVRI--------LT-DTSLDESPSVAPNGTMLIY 390 (430)
T ss_pred --EEEeecCCCCccceEECCCCC-EEEEEEccCCceEEEEEECCCCCEEE--------cc-CCCCCCCceECCCCCEEEE
Confidence 232222222334578999994 665544 343 57788887765221 11 1112234589999987765
Q ss_pred EEc
Q 035558 242 IAF 244 (253)
Q Consensus 242 ~~~ 244 (253)
.+.
T Consensus 391 ~~~ 393 (430)
T PRK00178 391 ATR 393 (430)
T ss_pred EEe
Confidence 443
No 243
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.52 E-value=9.7e-12 Score=91.95 Aligned_cols=220 Identities=19% Similarity=0.291 Sum_probs=145.6
Q ss_pred eEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCC-CEEEEEeCCCeEEEEeccCceeeeeeec
Q 035558 7 LLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEP-RRIGTSSIDTTCTIWDIEREAVDTQLIA 83 (253)
Q Consensus 7 ~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 83 (253)
.|.+.. + .|.+|++... +-...++... +++.+++|+ |++ ..|.+...+-.|.||.+.+.+... ++-
T Consensus 63 ilC~~yk~~~vqvwsl~Qp----ew~ckIdeg~-----agls~~~WS-PdgrhiL~tseF~lriTVWSL~t~~~~~-~~~ 131 (447)
T KOG4497|consen 63 ILCVAYKDPKVQVWSLVQP----EWYCKIDEGQ-----AGLSSISWS-PDGRHILLTSEFDLRITVWSLNTQKGYL-LPH 131 (447)
T ss_pred eeeeeeccceEEEEEeecc----eeEEEeccCC-----CcceeeeEC-CCcceEeeeecceeEEEEEEeccceeEE-ecc
Confidence 334444 4 9999999886 6566666665 789999999 677 556667778899999998776443 222
Q ss_pred ccccEEEEEec-CCCeEEEEeCCC------------------------------------cEEEEEcCCCCCeeeeeccC
Q 035558 84 HDKEVYDIAWG-GVGVFASVSADG------------------------------------SVRVFDLRDKEHSTIIYESS 126 (253)
Q Consensus 84 ~~~~v~~~~~~-~~~~l~~~~~dg------------------------------------~i~i~d~~~~~~~~~~~~~~ 126 (253)
.+..+..++|+ ++++.+.++.-. .+-+||---.- .++...
T Consensus 132 pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Ley---kv~aYe 208 (447)
T KOG4497|consen 132 PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY---KVYAYE 208 (447)
T ss_pred cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhh---eeeeee
Confidence 23456778888 888777665421 12222211111 111111
Q ss_pred CCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC-----------------------------------------
Q 035558 127 EPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL----------------------------------------- 165 (253)
Q Consensus 127 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~----------------------------------------- 165 (253)
..-.+..++|+| .++++++|++|+. +++.+--+.+.
T Consensus 209 -~~lG~k~v~wsP-~~qflavGsyD~~-lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~ 285 (447)
T KOG4497|consen 209 -RGLGLKFVEWSP-CNQFLAVGSYDQM-LRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE 285 (447)
T ss_pred -eccceeEEEecc-ccceEEeeccchh-hhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc
Confidence 113688899999 9999999999987 77654311000
Q ss_pred ----------------C--eeeec------ccccceeEEEEecCCCCeEEEecC--CCcEEEEeccCCCCCCCCCCCCee
Q 035558 166 ----------------P--VVELQ------RHQASVNAIAWAPHSSCHICTAGD--DSQALIWDLSSMGQPVEGGLDPIL 219 (253)
Q Consensus 166 ----------------~--~~~~~------~~~~~i~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~ 219 (253)
+ +..++ .....+.-++|++|. ++++|-.. -+.+-+||++..+.- .
T Consensus 286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~~PnalW~Wdlq~l~l~--------a 356 (447)
T KOG4497|consen 286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS-TYAATRNDKYPNALWLWDLQNLKLH--------A 356 (447)
T ss_pred cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc-eEEeeecCCCCceEEEEechhhhhh--------h
Confidence 0 01111 112346678999998 68887653 478999999986632 3
Q ss_pred eccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 220 AYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 220 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
......+|....|+|..+.++.+.....+.+|.
T Consensus 357 vLiQk~piraf~WdP~~prL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 357 VLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWA 389 (447)
T ss_pred hhhhccceeEEEeCCCCceEEEEcCCceEEEEc
Confidence 334567899999999999999888888888885
No 244
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.51 E-value=1.8e-11 Score=96.36 Aligned_cols=185 Identities=14% Similarity=0.139 Sum_probs=125.0
Q ss_pred CEE-EEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCee
Q 035558 56 RRI-GTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLV 133 (253)
Q Consensus 56 ~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~ 133 (253)
+++ ++-..++.|.+.|..+.+.+..+......-..+.++ +++++++++.||.|.++|+.+.+....+.... ...
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~----~~~ 81 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG----NPR 81 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS----EEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC----Ccc
Confidence 444 455678999999999999999888654444557788 99999999999999999999998655554322 567
Q ss_pred EEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccc-------ccceeEEEEecCCCCeEEEecCCCcEEEEeccC
Q 035558 134 RLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRH-------QASVNAIAWAPHSSCHICTAGDDSQALIWDLSS 206 (253)
Q Consensus 134 ~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 206 (253)
.+++++ ++++++++......+.++|.++.+ +++.+... ...+.++..+|..+.++++.-+-+.|.+.|...
T Consensus 82 ~i~~s~-DG~~~~v~n~~~~~v~v~D~~tle-~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 82 GIAVSP-DGKYVYVANYEPGTVSVIDAETLE-PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEE---TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred eEEEcC-CCCEEEEEecCCCceeEecccccc-ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 899999 999999888766669999999866 36655432 235677888888753555555668888888877
Q ss_pred CCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE-EcCCcEEEEE
Q 035558 207 MGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI-AFSTKLQILR 252 (253)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~i~vw~ 252 (253)
.+.+. ..............|+|++++++++ ..++.+-+++
T Consensus 160 ~~~~~------~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD 200 (369)
T PF02239_consen 160 PKNLK------VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVID 200 (369)
T ss_dssp SSCEE------EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred ccccc------eeeecccccccccccCcccceeeecccccceeEEEe
Confidence 64332 2344456678899999999987754 4556666665
No 245
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.51 E-value=1.9e-12 Score=108.14 Aligned_cols=183 Identities=16% Similarity=0.178 Sum_probs=143.4
Q ss_pred CCEEEEEeCCCeEEEEeccCceeeeeeecccccE-EEE---Eec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCC
Q 035558 55 PRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEV-YDI---AWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPD 129 (253)
Q Consensus 55 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v-~~~---~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 129 (253)
..+++.++.+..+.+||...+.....+....... .++ -++ +.-++++|+.-+.|.+|+....+.+. ...+|+
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~---~l~GHe 175 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI---RLKGHE 175 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc---eecccC
Confidence 4567788888899999998777666665322211 111 122 45588999999999999998444322 345889
Q ss_pred CCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCC
Q 035558 130 TPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQ 209 (253)
Q Consensus 130 ~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 209 (253)
+.|.++.|+. ++.++++.+.|.. +++|++.+.+.......+|+..+..++|.|+ .++++++|-+.++|+......
T Consensus 176 G~iF~i~~s~-dg~~i~s~SdDRs-iRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~~l 250 (967)
T KOG0974|consen 176 GSIFSIVTSL-DGRYIASVSDDRS-IRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNGTQL 250 (967)
T ss_pred CceEEEEEcc-CCcEEEEEecCcc-eeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEEEEEeccccee
Confidence 9999999998 9999999999998 9999999987655577789999999999997 799999999999996554321
Q ss_pred CCCCCCCCeeeccC-CCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 210 PVEGGLDPILAYTA-GAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 210 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
....+| ...|.+++..++....++++.|+.+++|++
T Consensus 251 --------~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 251 --------EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred --------hhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 144455 567999999999888889999999999974
No 246
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.2e-11 Score=100.19 Aligned_cols=202 Identities=15% Similarity=0.140 Sum_probs=124.5
Q ss_pred CCceEEeec----C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEE-EEeCCC--eEEEEeccCc
Q 035558 4 KPDLLATSS----D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIG-TSSIDT--TCTIWDIERE 75 (253)
Q Consensus 4 ~~~~l~~~~----~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg--~i~vwd~~~~ 75 (253)
+++.|+..+ + .|.+|++..+ +. ..+.... +...+.+|+ ++++.|+ +.+.+| .|++||+.++
T Consensus 214 Dg~~la~~s~~~~~~~l~~~dl~~g----~~-~~l~~~~-----g~~~~~~~S-pDG~~l~~~~s~~g~~~Iy~~d~~~g 282 (433)
T PRK04922 214 DGKKLAYVSFERGRSAIYVQDLATG----QR-ELVASFR-----GINGAPSFS-PDGRRLALTLSRDGNPEIYVMDLGSR 282 (433)
T ss_pred CCCEEEEEecCCCCcEEEEEECCCC----CE-EEeccCC-----CCccCceEC-CCCCEEEEEEeCCCCceEEEEECCCC
Confidence 555555544 2 7999999875 22 2222333 334578999 7887665 555555 5999999887
Q ss_pred eeeeeeecccccEEEEEec-CCCeEEEEeC-CCc--EEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC
Q 035558 76 AVDTQLIAHDKEVYDIAWG-GVGVFASVSA-DGS--VRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMD 151 (253)
Q Consensus 76 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 151 (253)
+.. .+..+.......+|+ +++.++.++. +|. |.++|+.+++... +.. . .......+|+| +++.|+..+.+
T Consensus 283 ~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~-~--g~~~~~~~~Sp-DG~~Ia~~~~~ 356 (433)
T PRK04922 283 QLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTF-Q--GNYNARASVSP-DGKKIAMVHGS 356 (433)
T ss_pred CeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eec-C--CCCccCEEECC-CCCEEEEEECC
Confidence 643 344455555678999 9988887664 454 6666766655322 221 1 12344689999 88888876544
Q ss_pred C--CeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecC-C--CcEEEEeccCCCCCCCCCCCCeeeccCCCc
Q 035558 152 S--AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGD-D--SQALIWDLSSMGQPVEGGLDPILAYTAGAE 226 (253)
Q Consensus 152 ~--~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 226 (253)
+ ..|.+||+.+.. ...+. +........|+|+| ++++..+. . +.|.++++.... . ..+..+.+.
T Consensus 357 ~~~~~I~v~d~~~g~--~~~Lt-~~~~~~~p~~spdG-~~i~~~s~~~g~~~L~~~~~~g~~-~-------~~l~~~~g~ 424 (433)
T PRK04922 357 GGQYRIAVMDLSTGS--VRTLT-PGSLDESPSFAPNG-SMVLYATREGGRGVLAAVSTDGRV-R-------QRLVSADGE 424 (433)
T ss_pred CCceeEEEEECCCCC--eEECC-CCCCCCCceECCCC-CEEEEEEecCCceEEEEEECCCCc-e-------EEcccCCCC
Confidence 3 248999997654 23333 22244567999999 56655443 2 356677775432 1 233344566
Q ss_pred eeEEEEcC
Q 035558 227 IEQLQWSS 234 (253)
Q Consensus 227 v~~~~~~~ 234 (253)
+...+|+|
T Consensus 425 ~~~p~wsp 432 (433)
T PRK04922 425 VREPAWSP 432 (433)
T ss_pred CCCCccCC
Confidence 77788887
No 247
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=6.2e-12 Score=101.61 Aligned_cols=175 Identities=15% Similarity=0.150 Sum_probs=110.0
Q ss_pred CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCC---CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC
Q 035558 65 TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSAD---GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ 140 (253)
Q Consensus 65 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 140 (253)
..|.++|.. +.....+..+...+.+.+|+ +++.|+..+.+ ..|.+||+.+++... +.. ..+.....+|+|
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~---~~g~~~~~~~SP- 249 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VAN---FKGSNSAPAWSP- 249 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eec---CCCCccceEECC-
Confidence 367777774 44444455677889999999 99988877643 359999998876422 221 223556889999
Q ss_pred CCCEEEE-EEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEE-EecCCCcEEEEeccCCCCCCCCCCCCe
Q 035558 141 DPRYMAT-IIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHIC-TAGDDSQALIWDLSSMGQPVEGGLDPI 218 (253)
Q Consensus 141 ~~~~l~~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~ 218 (253)
+++.|+. .+.++. ..+|.+.........+..+........|+|+|. .|+ ++..+|...+|.+....... .
T Consensus 250 DG~~la~~~~~~g~-~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~-~l~f~s~~~g~~~Iy~~~~~~g~~------~ 321 (427)
T PRK02889 250 DGRTLAVALSRDGN-SQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGR-SIYFTSDRGGAPQIYRMPASGGAA------Q 321 (427)
T ss_pred CCCEEEEEEccCCC-ceEEEEECCCCCcEECCCCCCCCcCeEEcCCCC-EEEEEecCCCCcEEEEEECCCCce------E
Confidence 8877764 455665 555554322222455555555567789999994 555 44456777788765322111 1
Q ss_pred eeccCCCceeEEEEcCCCCceEEEEcCC---cEEEEEC
Q 035558 219 LAYTAGAEIEQLQWSSSQPDWVAIAFST---KLQILRV 253 (253)
Q Consensus 219 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~i~vw~l 253 (253)
............+|+|+|+.++..+.++ .|.+|++
T Consensus 322 ~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~ 359 (427)
T PRK02889 322 RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDL 359 (427)
T ss_pred EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEEC
Confidence 1122223345678999999777655443 4777764
No 248
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=9.8e-11 Score=94.42 Aligned_cols=196 Identities=15% Similarity=0.127 Sum_probs=114.7
Q ss_pred CCeeEEEecCCCCCE--E-EEEeCCC--eEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeC-----CCcEEEE
Q 035558 43 GPLTSFDWNEAEPRR--I-GTSSIDT--TCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSA-----DGSVRVF 111 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~--l-~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-----dg~i~i~ 111 (253)
..+.+-+|+ |+++. + ++...+| .|.+.++.+++... +....+.....+|+ +++.|+..+. +..+..|
T Consensus 185 ~~~~sP~wS-PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~ 262 (428)
T PRK01029 185 SLSITPTWM-HIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSF 262 (428)
T ss_pred CCcccceEc-cCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEe
Confidence 445677899 78764 2 2444443 58888888775333 22234445568999 9988876553 3334557
Q ss_pred EcCCCC--CeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe-CCC-eEEEEECCCCCCCeeeecccccceeEEEEecCCC
Q 035558 112 DLRDKE--HSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM-DSA-KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSS 187 (253)
Q Consensus 112 d~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-~~~-~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 187 (253)
++..+. ....+.. .........+|+| +++.|+..+. ++. .|.++++.........+..+...+....|+|+|
T Consensus 263 ~~~~g~~g~~~~lt~--~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG- 338 (428)
T PRK01029 263 SLETGAIGKPRRLLN--EAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG- 338 (428)
T ss_pred ecccCCCCcceEeec--CCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC-
Confidence 776531 2222222 1112345689999 8887776654 443 244445542222234444445567789999999
Q ss_pred CeEEEec-CC--CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEc-C--CcEEEEE
Q 035558 188 CHICTAG-DD--SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAF-S--TKLQILR 252 (253)
Q Consensus 188 ~~l~~~~-~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~--~~i~vw~ 252 (253)
+.|+..+ .+ ..|.+||+.+++.. .+......+....|+|+++.++..+. . ..+.+++
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~~--------~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRDY--------QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCeE--------EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 4665544 33 46899999876532 22222345677899999987764332 2 3455554
No 249
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.48 E-value=5.9e-11 Score=93.48 Aligned_cols=182 Identities=13% Similarity=0.122 Sum_probs=125.0
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEe
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAW 93 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 93 (253)
.|.+.|..+. +.+..+.... ..-..+.|+ ++++++++++.||.|.++|+.+.+.+.+++.- .....+++
T Consensus 17 ~v~viD~~t~----~~~~~i~~~~-----~~h~~~~~s-~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~ 85 (369)
T PF02239_consen 17 SVAVIDGATN----KVVARIPTGG-----APHAGLKFS-PDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAV 85 (369)
T ss_dssp EEEEEETTT-----SEEEEEE-ST-----TEEEEEE-T-T-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE
T ss_pred EEEEEECCCC----eEEEEEcCCC-----CceeEEEec-CCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEE
Confidence 9999999886 7788887654 333456788 89999999999999999999999999888853 45678999
Q ss_pred c-CCCeEEEEe-CCCcEEEEEcCCCCCeeeeeccC----CCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCe
Q 035558 94 G-GVGVFASVS-ADGSVRVFDLRDKEHSTIIYESS----EPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPV 167 (253)
Q Consensus 94 ~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~ 167 (253)
+ ++++++++. ..+.+.++|.++.+..+.+.... ..+..+..+..+| ....+++.-.+...|.+.|........
T Consensus 86 s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 86 SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp --TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccccc
Confidence 9 999888765 68999999999988666554321 1345677888888 666666666665559888987765433
Q ss_pred eeecccccceeEEEEecCCCCeE-EEecCCCcEEEEeccCCC
Q 035558 168 VELQRHQASVNAIAWAPHSSCHI-CTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 168 ~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~ 208 (253)
.....-........|+|++ +++ ++...++.|.++|.++.+
T Consensus 165 ~~~i~~g~~~~D~~~dpdg-ry~~va~~~sn~i~viD~~~~k 205 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDG-RYFLVAANGSNKIAVIDTKTGK 205 (369)
T ss_dssp EEEEE--TTEEEEEE-TTS-SEEEEEEGGGTEEEEEETTTTE
T ss_pred eeeecccccccccccCccc-ceeeecccccceeEEEeeccce
Confidence 3333344567889999999 555 445667788899887764
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=5.3e-11 Score=96.65 Aligned_cols=183 Identities=13% Similarity=0.125 Sum_probs=109.3
Q ss_pred CCeeEEEecCCCCCEEEEEeC-CC--eEEEEeccCceeeeeeecccccEEEEEec-CCCeEEE-EeCCCc--EEEEEcCC
Q 035558 43 GPLTSFDWNEAEPRRIGTSSI-DT--TCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFAS-VSADGS--VRVFDLRD 115 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~-~~~dg~--i~i~d~~~ 115 (253)
..+.+..|+ |+++.|+..+. ++ .|++||+.+++... +....+.....+|+ +++.|+. .+.+|. |.++|+.+
T Consensus 218 ~~~~~p~wS-PDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t 295 (448)
T PRK04792 218 EPLMSPAWS-PDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT 295 (448)
T ss_pred CcccCceEC-CCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC
Confidence 578899999 88988876643 22 68899998776432 22223334567999 8887764 566665 77778877
Q ss_pred CCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC-CC-eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEe
Q 035558 116 KEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMD-SA-KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTA 193 (253)
Q Consensus 116 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~-~~-~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 193 (253)
++... + ..+.......+|+| +++.|+..+.. +. .|+++|+.+++ ...+..........+|+|+|. +|+..
T Consensus 296 g~~~~-l---t~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~--~~~Lt~~g~~~~~~~~SpDG~-~l~~~ 367 (448)
T PRK04792 296 KALTR-I---TRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGK--VSRLTFEGEQNLGGSITPDGR-SMIMV 367 (448)
T ss_pred CCeEE-C---ccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCC--EEEEecCCCCCcCeeECCCCC-EEEEE
Confidence 65322 2 12223556789999 88877766543 22 36667776544 333322222334579999995 66544
Q ss_pred c-CCCc--EEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEc
Q 035558 194 G-DDSQ--ALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAF 244 (253)
Q Consensus 194 ~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 244 (253)
+ .++. |.++|+.++... .+... .......|+|+++.++....
T Consensus 368 ~~~~g~~~I~~~dl~~g~~~--------~lt~~-~~d~~ps~spdG~~I~~~~~ 412 (448)
T PRK04792 368 NRTNGKFNIARQDLETGAMQ--------VLTST-RLDESPSVAPNGTMVIYSTT 412 (448)
T ss_pred EecCCceEEEEEECCCCCeE--------EccCC-CCCCCceECCCCCEEEEEEe
Confidence 4 4454 445666655421 11111 11224479999987764443
No 251
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.47 E-value=4.3e-13 Score=117.56 Aligned_cols=185 Identities=14% Similarity=0.175 Sum_probs=142.8
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee-cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCee
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI-AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHST 120 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~ 120 (253)
..|.++.=+ |...+.++|+.||.|++|.-..++.+..++ .-+..|+.+.|+ .|+.+..+..||.+.+|... ++
T Consensus 2209 ~~v~r~~sH-p~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~----pk 2283 (2439)
T KOG1064|consen 2209 ENVRRMTSH-PSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS----PK 2283 (2439)
T ss_pred CceeeecCC-CCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC----Cc
Confidence 456666667 667788999999999999998888777776 234889999999 99999999999999999887 23
Q ss_pred eeeccCCCCCCeeEEEeeCCCCCEEEEEEe--CCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCc
Q 035558 121 IIYESSEPDTPLVRLGWNKQDPRYMATIIM--DSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQ 198 (253)
Q Consensus 121 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 198 (253)
+......|+.....+.|-- ..+++++. |++.+.+||.-.....-..-.+|.+.++++++-|.. ++|++|+.+|.
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~-qllisggr~G~ 2359 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKH-QLLISGGRKGE 2359 (2439)
T ss_pred ceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcc-eEEEecCCcCc
Confidence 4555566777788888853 56666653 444599999865442222227899999999999998 79999999999
Q ss_pred EEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 199 ALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 199 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
|++||++..+.. |.-+. ++ ...++++++..|.++||++
T Consensus 2360 v~l~D~rqrql~------------h~~~~----~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLR------------HTFQA----LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred EEEeehHHHHHH------------HHhhh----hh-hhheeeccCcccceEEEEc
Confidence 999999875422 21121 55 4557889999999999986
No 252
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.45 E-value=1.1e-12 Score=114.98 Aligned_cols=181 Identities=18% Similarity=0.237 Sum_probs=141.8
Q ss_pred CCCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 2 CQKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 2 p~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
|.+.-||..++| .|++|....+ +.+..++.-.. +.|+.+.|+ ..|+.+..+..||.+.+|... .+....
T Consensus 2218 p~~~~Yltgs~dgsv~~~~w~~~----~~v~~~rt~g~----s~vtr~~f~-~qGnk~~i~d~dg~l~l~q~~-pk~~~s 2287 (2439)
T KOG1064|consen 2218 PSDPYYLTGSQDGSVRMFEWGHG----QQVVCFRTAGN----SRVTRSRFN-HQGNKFGIVDGDGDLSLWQAS-PKPYTS 2287 (2439)
T ss_pred CCCceEEecCCCceEEEEeccCC----CeEEEeeccCc----chhhhhhhc-ccCCceeeeccCCceeecccC-Ccceec
Confidence 556666666667 9999999886 55555543322 679999999 899999999999999999987 667777
Q ss_pred eecccccEEEEEecCCCeEEEEe---CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558 81 LIAHDKEVYDIAWGGVGVFASVS---ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV 157 (253)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~ 157 (253)
.+.|.....+..|- +..+++++ .++.+.+||..-......+. ..|.+.++++++-| ..++|++|+.+|- |++
T Consensus 2288 ~qchnk~~~Df~Fi-~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P-~~qllisggr~G~-v~l 2362 (2439)
T KOG1064|consen 2288 WQCHNKALSDFRFI-GSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP-KHQLLISGGRKGE-VCL 2362 (2439)
T ss_pred cccCCccccceeee-ehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC-cceEEEecCCcCc-EEE
Confidence 88899999998886 46667664 47889999987654333333 67788999999999 8999999999999 999
Q ss_pred EECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCC
Q 035558 158 LDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQ 209 (253)
Q Consensus 158 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 209 (253)
||++..+. ++.++. +. .. .++++|+..|.++||++.....
T Consensus 2363 ~D~rqrql-~h~~~~---------~~-~~-~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2363 FDIRQRQL-RHTFQA---------LD-TR-EYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred eehHHHHH-HHHhhh---------hh-hh-heeeccCcccceEEEEccccch
Confidence 99987543 444443 44 33 4899999999999999988753
No 253
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=5.8e-11 Score=93.43 Aligned_cols=110 Identities=20% Similarity=0.352 Sum_probs=78.8
Q ss_pred CCCCeeEEEeeCCCCCEEE-EEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecC---CCcEEEEe
Q 035558 128 PDTPLVRLGWNKQDPRYMA-TIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGD---DSQALIWD 203 (253)
Q Consensus 128 ~~~~i~~~~~~~~~~~~l~-~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~i~iwd 203 (253)
.+++|.++.|+| +++.++ +-|.--..+.+||++- .++..+. +++-+++-|+|.| ++++.++- -|.|-|||
T Consensus 269 k~GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr~--~~v~df~--egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwD 342 (566)
T KOG2315|consen 269 KEGPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLRG--KPVFDFP--EGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWD 342 (566)
T ss_pred CCCCceEEEECC-CCCEEEEEEecccceEEEEcCCC--CEeEeCC--CCCccceEECCCC-CEEEEeecCCCCCceEEEe
Confidence 367999999999 565444 4444444499999984 2355554 5778899999999 67777664 58999999
Q ss_pred ccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEc------CCcEEEEE
Q 035558 204 LSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAF------STKLQILR 252 (253)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~i~vw~ 252 (253)
+.+.+... .-....-+-+.|+|+|++++++.. |+.++||+
T Consensus 343 v~n~K~i~---------~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 343 VPNRKLIA---------KFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred ccchhhcc---------ccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 99955332 112234456789999999996544 57888887
No 254
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=8e-11 Score=95.58 Aligned_cols=171 Identities=13% Similarity=0.116 Sum_probs=114.0
Q ss_pred CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeC---CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC
Q 035558 65 TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSA---DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ 140 (253)
Q Consensus 65 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 140 (253)
..|.++|... .....+..+...+...+|+ +++.|+..+. +..|.+||+.+++.. .+. ...+.+...+|+|
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~---~~~g~~~~~~~SP- 255 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVG---NFPGMTFAPRFSP- 255 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Eee---cCCCcccCcEECC-
Confidence 3788999864 4445566678899999999 9998887764 468999999887632 222 2233667889999
Q ss_pred CCCEEEEE-EeCCC-eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEec-CCC--cEEEEeccCCCCCCCCCC
Q 035558 141 DPRYMATI-IMDSA-KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAG-DDS--QALIWDLSSMGQPVEGGL 215 (253)
Q Consensus 141 ~~~~l~~~-~~~~~-~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~ 215 (253)
+++.|+.. +.++. .|++||+.+.. ...+..+........|+|+| +.|+..+ .+| .|.++|+..+..
T Consensus 256 DG~~la~~~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~~------ 326 (435)
T PRK05137 256 DGRKVVMSLSQGGNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSNP------ 326 (435)
T ss_pred CCCEEEEEEecCCCceEEEEECCCCc--eEEccCCCCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCCe------
Confidence 88776544 44432 37777887654 45566566667789999999 4666554 444 577777665432
Q ss_pred CCeeeccCCCceeEEEEcCCCCceEEEEcCC---cEEEEE
Q 035558 216 DPILAYTAGAEIEQLQWSSSQPDWVAIAFST---KLQILR 252 (253)
Q Consensus 216 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~i~vw~ 252 (253)
..+..+...+....|+|+|+.++....++ .+.+|+
T Consensus 327 --~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d 364 (435)
T PRK05137 327 --RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMK 364 (435)
T ss_pred --EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEE
Confidence 12222345567789999999777655432 355554
No 255
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.42 E-value=4e-11 Score=89.11 Aligned_cols=191 Identities=14% Similarity=0.208 Sum_probs=135.8
Q ss_pred ceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec
Q 035558 6 DLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA 83 (253)
Q Consensus 6 ~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 83 (253)
..|..+-+ ++.-+.+...-+.....+....|. ..+..+-|+ ....++++.+.|..+.---.+.+..+..+.
T Consensus 81 ~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~-----~~v~~~if~-~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~- 153 (404)
T KOG1409|consen 81 RRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQ-----ARVSAIVFS-LTHEWVLSTGKDKQFAWHCTESGNRLGGYN- 153 (404)
T ss_pred eEEEEEEecceEEEEEhhhhhhhcchhhhhhhhh-----cceeeEEec-CCceeEEEeccccceEEEeeccCCcccceE-
Confidence 34455544 566565544333345566677787 899999999 778899999999776544445444333222
Q ss_pred ccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCC
Q 035558 84 HDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFP 163 (253)
Q Consensus 84 ~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~ 163 (253)
-....+++.+. -.+...|...|.|.+..+..... ..+....++...+.+++|.| ....+.++..|.. +.+||+...
T Consensus 154 ~~~~~t~~~~d-~~~~fvGd~~gqvt~lr~~~~~~-~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~-vi~wdigg~ 229 (404)
T KOG1409|consen 154 FETPASALQFD-ALYAFVGDHSGQITMLKLEQNGC-QLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHS-VIMWDIGGR 229 (404)
T ss_pred eeccCCCCcee-eEEEEecccccceEEEEEeecCC-ceEEEEcCcccceEEEEEcC-CCcEEEeccccCc-eEEEeccCC
Confidence 11122223332 11555666677777777765543 35566678888999999999 8889999998888 999999877
Q ss_pred CCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558 164 TLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 164 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
.....++.+|...|..+...+.- +.|++++.||.|.+|++....
T Consensus 230 ~g~~~el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 230 KGTAYELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred cceeeeeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEecccee
Confidence 76678889999999999888876 699999999999999987543
No 256
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.41 E-value=9.2e-10 Score=97.50 Aligned_cols=243 Identities=10% Similarity=0.079 Sum_probs=146.1
Q ss_pred CCCCceEEeecC--cEEEEEccCCccccceeeeecCCCCc---------cccCCeeEEEecCCCCCEEEEE-eCCCeEEE
Q 035558 2 CQKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNS---------EYCGPLTSFDWNEAEPRRIGTS-SIDTTCTI 69 (253)
Q Consensus 2 p~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~v 69 (253)
+.+++++++-.. .|+++|... .....+.+-... ..-.....+++. ++++.|+.+ ..++.|++
T Consensus 577 ~~~g~lyVaDs~n~rI~v~d~~G-----~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd-~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 577 LLNNRLFISDSNHNRIVVTDLDG-----NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYN-AKKNLLYVADTENHALRE 650 (1057)
T ss_pred CCCCeEEEEECCCCeEEEEeCCC-----CEEEEEccCCCcCCCCCchhccccCCCcEEEEe-CCCCEEEEEeCCCceEEE
Confidence 345667776554 899999875 323222220000 000235688998 666655554 45578999
Q ss_pred EeccCceeeeeeecc-----------------cccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeec-----c
Q 035558 70 WDIEREAVDTQLIAH-----------------DKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYE-----S 125 (253)
Q Consensus 70 wd~~~~~~~~~~~~~-----------------~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~ 125 (253)
+|+.++. +.++.+- -.....++++ ++.++++...++.|++||..++........ .
T Consensus 651 id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~ 729 (1057)
T PLN02919 651 IDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNL 729 (1057)
T ss_pred EecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccC
Confidence 9987654 3222110 1134678888 456677777889999999877642111100 0
Q ss_pred CC------CCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCee------------eeccc--------ccceeE
Q 035558 126 SE------PDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVV------------ELQRH--------QASVNA 179 (253)
Q Consensus 126 ~~------~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~------------~~~~~--------~~~i~~ 179 (253)
.. .-.....++++| +++.|+++...+..|++||+.+....+. .+... -....+
T Consensus 730 ~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 730 NGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 00 012456799999 7776666555544599999886432110 01000 113468
Q ss_pred EEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCC------CeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 180 IAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLD------PILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 180 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
++++++| .++++-+.+++|++||..++......... -............++++++|+.+++-+.++.|++|++
T Consensus 809 vavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 809 VLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 9999999 58888889999999999765422100000 0001122346789999999987778888999999985
No 257
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.41 E-value=2.1e-09 Score=84.67 Aligned_cols=232 Identities=13% Similarity=0.131 Sum_probs=144.5
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC----CCeEEEEeccCc--e--eeeeeeccc
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI----DTTCTIWDIERE--A--VDTQLIAHD 85 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~--~--~~~~~~~~~ 85 (253)
.|.+|+++.....+........- ....-++++ +++++|.+... ++.|..|++... + .+.......
T Consensus 14 gI~~~~~d~~~g~l~~~~~~~~~------~~Ps~l~~~-~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g 86 (345)
T PF10282_consen 14 GIYVFRFDEETGTLTLVQTVAEG------ENPSWLAVS-PDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG 86 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEEES------SSECCEEE--TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS
T ss_pred cEEEEEEcCCCCCceEeeeecCC------CCCceEEEE-eCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC
Confidence 78999985543445545544332 345678898 78888888876 568999988764 2 333333334
Q ss_pred ccEEEEEec-CCCeEEEEe-CCCcEEEEEcCCCCCeeee---ecc--------CCCCCCeeEEEeeCCCCCEEEEEEeCC
Q 035558 86 KEVYDIAWG-GVGVFASVS-ADGSVRVFDLRDKEHSTII---YES--------SEPDTPLVRLGWNKQDPRYMATIIMDS 152 (253)
Q Consensus 86 ~~v~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~~---~~~--------~~~~~~i~~~~~~~~~~~~l~~~~~~~ 152 (253)
.....++++ ++++++++. .+|.|.++++.....+... ... ........++.|+| +++++++.....
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~ 165 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGA 165 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTT
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCC
Confidence 556778998 888888876 4899999999875322221 100 11223678899999 888888877655
Q ss_pred CeEEEEECCCCCCCeee---ec-ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCee---eccCCC
Q 035558 153 AKVVVLDIRFPTLPVVE---LQ-RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPIL---AYTAGA 225 (253)
Q Consensus 153 ~~i~~~d~~~~~~~~~~---~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~ 225 (253)
..|.+|++......+.. +. ........++|+|++....++.-.++.|.++++............... ......
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~ 245 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN 245 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSS
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccC
Confidence 56999999875522322 21 234567889999999534455667899999999833211100000000 011223
Q ss_pred ceeEEEEcCCCCceEEEE-cCCcEEEEEC
Q 035558 226 EIEQLQWSSSQPDWVAIA-FSTKLQILRV 253 (253)
Q Consensus 226 ~v~~~~~~~~~~~~~~~~-~~~~i~vw~l 253 (253)
....|+++|++++++++. ..+.|.+|++
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 688999999999777554 5667888764
No 258
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.40 E-value=1.1e-11 Score=88.68 Aligned_cols=150 Identities=15% Similarity=0.192 Sum_probs=100.7
Q ss_pred CCCCEEEEEeCCCeEEEEeccCce-eeeeeecccccEEEEEec-CCCeEEEEe-----CCCcEEEEEcCCCCCeeeeecc
Q 035558 53 AEPRRIGTSSIDTTCTIWDIEREA-VDTQLIAHDKEVYDIAWG-GVGVFASVS-----ADGSVRVFDLRDKEHSTIIYES 125 (253)
Q Consensus 53 ~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~-~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~ 125 (253)
-.++.++++..||.+.+.+.+... ....+..-...-.+.++. .++.+.++. .-+..+.|+++..+. +...
T Consensus 99 ~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t---~~~~ 175 (319)
T KOG4714|consen 99 MTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKT---LIPS 175 (319)
T ss_pred ccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccc---cccc
Confidence 346779999999999999876521 111111111111122222 344443332 223466676665542 2111
Q ss_pred CCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEecc
Q 035558 126 SEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLS 205 (253)
Q Consensus 126 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 205 (253)
......|.+++-+|....++++|+.+|. +.+||.|+...|...+..|+.+++.+.|+|..+..|+++++||.+.-||..
T Consensus 176 ~~~~~~v~~l~~hp~qq~~v~cgt~dg~-~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 176 KKALDAVTALCSHPAQQHLVCCGTDDGI-VGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred ccccccchhhhCCcccccEEEEecCCCe-EEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 2222359999999955566666666666 999999998888888999999999999999888899999999999999987
Q ss_pred C
Q 035558 206 S 206 (253)
Q Consensus 206 ~ 206 (253)
+
T Consensus 255 ~ 255 (319)
T KOG4714|consen 255 T 255 (319)
T ss_pred C
Confidence 4
No 259
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.40 E-value=2.7e-11 Score=89.10 Aligned_cols=238 Identities=13% Similarity=0.185 Sum_probs=156.8
Q ss_pred CCceEEeecC--cEEEEEccCC-ccccceeeeecCCCCc-------cccCCeeEEEecCCC-CCEEEEEeCCCeEEEEec
Q 035558 4 KPDLLATSSD--FLRVWRISDE-DRRVELKSLLNGNKNS-------EYCGPLTSFDWNEAE-PRRIGTSSIDTTCTIWDI 72 (253)
Q Consensus 4 ~~~~l~~~~~--~v~iw~~~~~-~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~vwd~ 72 (253)
.|.+|++|.. .|.+|.-... ..+++....+++|... +....|..+.|..+. ...++..+.|.+|++|.+
T Consensus 37 tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKi 116 (460)
T COG5170 37 TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKI 116 (460)
T ss_pred ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeee
Confidence 5788999984 8888876543 1334555667777621 122467888887433 345666678999999987
Q ss_pred cCce-------------------------------------ee-----eee-ecccccEEEEEec-CCCeEEEEeCCCcE
Q 035558 73 EREA-------------------------------------VD-----TQL-IAHDKEVYDIAWG-GVGVFASVSADGSV 108 (253)
Q Consensus 73 ~~~~-------------------------------------~~-----~~~-~~~~~~v~~~~~~-~~~~l~~~~~dg~i 108 (253)
.... .+ +.. ..|.--|.++.++ +...++++ .|-.|
T Consensus 117 yeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrI 195 (460)
T COG5170 117 YEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSA-DDLRI 195 (460)
T ss_pred ecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeec-cceee
Confidence 5420 00 011 3567778899999 77777664 57789
Q ss_pred EEEEcCCCCCeeeeeccCCCC-----CCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCe-----ee---------
Q 035558 109 RVFDLRDKEHSTIIYESSEPD-----TPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPV-----VE--------- 169 (253)
Q Consensus 109 ~i~d~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~-----~~--------- 169 (253)
.+|++.-....-.+.....+. ..|++..|+|...+.+.-.+..|. |++-|+|....+. ..
T Consensus 196 NLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~-Ikl~DlRq~alcdn~~klfe~~~D~v~~~ 274 (460)
T COG5170 196 NLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE-IKLNDLRQSALCDNSKKLFELTIDGVDVD 274 (460)
T ss_pred eeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc-EEehhhhhhhhccCchhhhhhccCcccch
Confidence 999988665333333222222 268899999977888888888888 9999999543211 11
Q ss_pred -ecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC------------CCce---eEEEEc
Q 035558 170 -LQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA------------GAEI---EQLQWS 233 (253)
Q Consensus 170 -~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------------~~~v---~~~~~~ 233 (253)
+.+-...|..+.|+++| +++++-+. -++++||++..+.|. ....-| ...| ..+.|+
T Consensus 275 ff~eivsSISD~kFs~ng-ryIlsRdy-ltvkiwDvnm~k~pi------kTi~~h~~l~~~l~d~YEnDaifdkFeisfS 346 (460)
T COG5170 275 FFEEIVSSISDFKFSDNG-RYILSRDY-LTVKIWDVNMAKNPI------KTIPMHCDLMDELNDVYENDAIFDKFEISFS 346 (460)
T ss_pred hHHHHhhhhcceEEcCCC-cEEEEecc-ceEEEEecccccCCc------eeechHHHHHHHHHhhhhccceeeeEEEEec
Confidence 11223468889999999 68877664 689999999888765 121111 2222 357788
Q ss_pred CCCCceEEEEcCCcEEEE
Q 035558 234 SSQPDWVAIAFSTKLQIL 251 (253)
Q Consensus 234 ~~~~~~~~~~~~~~i~vw 251 (253)
-+.+.+++++..+..-++
T Consensus 347 gd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 347 GDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred CCcccccccccccceeee
Confidence 888888888877766554
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=6e-10 Score=89.91 Aligned_cols=197 Identities=13% Similarity=0.129 Sum_probs=115.9
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC-CC----eEEEEeccCc---eeeeeeeccc
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI-DT----TCTIWDIERE---AVDTQLIAHD 85 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg----~i~vwd~~~~---~~~~~~~~~~ 85 (253)
.|.+.++..+ ..+.+..+. +.....+|+ |+++.|+..+. +| .+..|++..+ +.........
T Consensus 212 ~I~~~~l~~g--~~~~lt~~~--------g~~~~p~wS-PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~ 280 (428)
T PRK01029 212 KIFLGSLENP--AGKKILALQ--------GNQLMPTFS-PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF 280 (428)
T ss_pred eEEEEECCCC--CceEeecCC--------CCccceEEC-CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCC
Confidence 7888888764 112222233 334467899 88988776542 23 3444676642 2222222222
Q ss_pred ccEEEEEec-CCCeEEEEe-CCCcEEEEE--cCCC-CCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC--CeEEEE
Q 035558 86 KEVYDIAWG-GVGVFASVS-ADGSVRVFD--LRDK-EHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS--AKVVVL 158 (253)
Q Consensus 86 ~~v~~~~~~-~~~~l~~~~-~dg~i~i~d--~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~--~~i~~~ 158 (253)
......+|+ +++.|+..+ .+|...+|. +... .....+. .....+....|+| +++.|+..+.++ ..|.+|
T Consensus 281 ~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt---~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~ 356 (428)
T PRK01029 281 GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT---KKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVY 356 (428)
T ss_pred CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec---cCCCCccceeECC-CCCEEEEEEcCCCCcEEEEE
Confidence 344677999 998777665 467655554 4321 2122222 2223567889999 888888766542 248999
Q ss_pred ECCCCCCCeeeecccccceeEEEEecCCCCeEE-EecC--CCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC
Q 035558 159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHIC-TAGD--DSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS 235 (253)
Q Consensus 159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 235 (253)
|+.+++ ...+......+....|+|+|. .|+ ++.. ...|.++|+..++.. .+....+.+...+|+|.
T Consensus 357 dl~~g~--~~~Lt~~~~~~~~p~wSpDG~-~L~f~~~~~g~~~L~~vdl~~g~~~--------~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 357 DLATGR--DYQLTTSPENKESPSWAIDSL-HLVYSAGNSNESELYLISLITKKTR--------KIVIGSGEKRFPSWGAF 425 (428)
T ss_pred ECCCCC--eEEccCCCCCccceEECCCCC-EEEEEECCCCCceEEEEECCCCCEE--------EeecCCCcccCceecCC
Confidence 998765 334433334567899999994 554 4443 356778888765422 23334455677889875
Q ss_pred C
Q 035558 236 Q 236 (253)
Q Consensus 236 ~ 236 (253)
.
T Consensus 426 ~ 426 (428)
T PRK01029 426 P 426 (428)
T ss_pred C
Confidence 4
No 261
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.38 E-value=4.1e-10 Score=81.27 Aligned_cols=223 Identities=9% Similarity=0.049 Sum_probs=143.5
Q ss_pred ceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCee---EEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 6 DLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLT---SFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 6 ~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
.+||.|+. .+.+|...+.+ ........|. ..|+ ..+ .....+..++.|.++++.+++.+.....
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~---~h~~~cd~sn-----n~v~~~~r~c---d~~~~~~i~sndht~k~~~~~~~s~~~~ 153 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTND---GHLYQCDVSN-----NDVTLVKRYC---DLKFPLNIASNDHTGKTMVVSGDSNKFA 153 (344)
T ss_pred cEEEeccccceeeeecccCcc---cceeeecccc-----cchhhhhhhc---ccccceeeccCCcceeEEEEecCcccce
Confidence 45677654 99999988641 2233333333 1121 111 1223456678899999998876543333
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
+.-..-.+.+++++ +++++++.+....|..|.+...............+..-.+..|+. ....+|++..||. +.|||
T Consensus 154 ~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~-~~I~D 231 (344)
T KOG4532|consen 154 VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGT-CAIYD 231 (344)
T ss_pred eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCc-EEEEE
Confidence 22112337888999 999999999999999999986643222211122233556788988 8889999999999 99999
Q ss_pred CCCCCCCeeee----cccccceeEEEEecCCCC-eEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCc-eeEEEEc
Q 035558 160 IRFPTLPVVEL----QRHQASVNAIAWAPHSSC-HICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAE-IEQLQWS 233 (253)
Q Consensus 160 ~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~ 233 (253)
+|....|.... ..|.+.+..+.|++-|.- +|+..-.-+.+.+.|+++...-......+...+.|... |..-.|+
T Consensus 232 VR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~ 311 (344)
T KOG4532|consen 232 VRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFN 311 (344)
T ss_pred ecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccccccccc
Confidence 99877654432 358899999999986643 44444456889999999987433211222233445444 7777787
Q ss_pred CCCCceEE
Q 035558 234 SSQPDWVA 241 (253)
Q Consensus 234 ~~~~~~~~ 241 (253)
.++....+
T Consensus 312 ~~n~s~~v 319 (344)
T KOG4532|consen 312 NENESNDV 319 (344)
T ss_pred CCCccccc
Confidence 77654443
No 262
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.37 E-value=6.1e-09 Score=76.07 Aligned_cols=225 Identities=11% Similarity=0.081 Sum_probs=133.7
Q ss_pred CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
++|++||...| .|.|-..... -...+...+.+++.. -.-..++|+ +++.+||.+...|+|+++|+...+ +..+
T Consensus 7 ~~Gk~lAi~qd~~iEiRsa~Dd--f~si~~kcqVpkD~~--PQWRkl~WS-pD~tlLa~a~S~G~i~vfdl~g~~-lf~I 80 (282)
T PF15492_consen 7 SDGKLLAILQDQCIEIRSAKDD--FSSIIGKCQVPKDPN--PQWRKLAWS-PDCTLLAYAESTGTIRVFDLMGSE-LFVI 80 (282)
T ss_pred CCCcEEEEEeccEEEEEeccCC--chheeEEEecCCCCC--chheEEEEC-CCCcEEEEEcCCCeEEEEecccce-eEEc
Confidence 68899999998 8888776653 112333333333111 356789999 999999999999999999998544 2233
Q ss_pred ec-------ccccEEEEEec--C-----CCeEEEEeCCCcEEEEEcCCC--C---CeeeeeccCCCCCCeeEEEeeCCCC
Q 035558 82 IA-------HDKEVYDIAWG--G-----VGVFASVSADGSVRVFDLRDK--E---HSTIIYESSEPDTPLVRLGWNKQDP 142 (253)
Q Consensus 82 ~~-------~~~~v~~~~~~--~-----~~~l~~~~~dg~i~i~d~~~~--~---~~~~~~~~~~~~~~i~~~~~~~~~~ 142 (253)
.. -...|..|.|. . ...|+.-..+|.++-|-+..+ + ....+.........|.++.++| ..
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h 159 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KH 159 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CC
Confidence 21 23567777776 2 225677778888888776332 2 1122222233455899999999 66
Q ss_pred CEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeE-EEecCCCcE------EEEeccCCCCCCCCCC
Q 035558 143 RYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHI-CTAGDDSQA------LIWDLSSMGQPVEGGL 215 (253)
Q Consensus 143 ~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i------~iwd~~~~~~~~~~~~ 215 (253)
++|++||.... + .. . -.+-...+++-..-.+.+.+. ++...|+.. .+|.+-+...-
T Consensus 160 ~LLlVgG~~~~-------~--~~-~--s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~f----- 222 (282)
T PF15492_consen 160 RLLLVGGCEQN-------Q--DG-M--SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFF----- 222 (282)
T ss_pred CEEEEeccCCC-------C--Cc-c--ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeee-----
Confidence 77777765433 0 00 0 011122333333333333222 222222211 22322221100
Q ss_pred CCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 216 DPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 216 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
.........|..+..||+|+.|++...+|.|.+|++
T Consensus 223 --s~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 223 --SRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEI 258 (282)
T ss_pred --eccccCCCceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence 011234678999999999999999999999999986
No 263
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=6.4e-10 Score=90.36 Aligned_cols=203 Identities=13% Similarity=0.176 Sum_probs=119.5
Q ss_pred CCceEEeec----C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEE-EEeCCC--eEEEEeccCc
Q 035558 4 KPDLLATSS----D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIG-TSSIDT--TCTIWDIERE 75 (253)
Q Consensus 4 ~~~~l~~~~----~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg--~i~vwd~~~~ 75 (253)
+++.|+..+ . .|.+|++.++ +.. .+.... +.+...+|+ |+++.|+ +.+.+| .|++||+.++
T Consensus 209 DG~~la~~s~~~~~~~l~~~~l~~g----~~~-~l~~~~-----g~~~~~~~S-pDG~~la~~~~~~g~~~Iy~~d~~~~ 277 (430)
T PRK00178 209 DGKRIAYVSFEQKRPRIFVQNLDTG----RRE-QITNFE-----GLNGAPAWS-PDGSKLAFVLSKDGNPEIYVMDLASR 277 (430)
T ss_pred CCCEEEEEEcCCCCCEEEEEECCCC----CEE-EccCCC-----CCcCCeEEC-CCCCEEEEEEccCCCceEEEEECCCC
Confidence 455555433 2 6889999875 222 222222 334568899 7888776 444455 6888899877
Q ss_pred eeeeeeecccccEEEEEec-CCCeEEEEeC-CC--cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC
Q 035558 76 AVDTQLIAHDKEVYDIAWG-GVGVFASVSA-DG--SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMD 151 (253)
Q Consensus 76 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 151 (253)
+.. .+..+........|+ +++.++..+. +| .|.++|+.+++....... . .......|+| +++.++..+..
T Consensus 278 ~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~--~--~~~~~~~~Sp-dg~~i~~~~~~ 351 (430)
T PRK00178 278 QLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV--G--NYNARPRLSA-DGKTLVMVHRQ 351 (430)
T ss_pred CeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC--C--CCccceEECC-CCCEEEEEEcc
Confidence 643 344455556678899 8887776654 33 477778777653222211 1 1334578999 88888877654
Q ss_pred CC--eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEE-ecCCCc--EEEEeccCCCCCCCCCCCCeeeccCCCc
Q 035558 152 SA--KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICT-AGDDSQ--ALIWDLSSMGQPVEGGLDPILAYTAGAE 226 (253)
Q Consensus 152 ~~--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 226 (253)
++ .|.++|+.++. ...+.. ........|+|+|. .++. ...++. |.++++..... ..+..+.+.
T Consensus 352 ~~~~~l~~~dl~tg~--~~~lt~-~~~~~~p~~spdg~-~i~~~~~~~g~~~l~~~~~~g~~~--------~~l~~~~g~ 419 (430)
T PRK00178 352 DGNFHVAAQDLQRGS--VRILTD-TSLDESPSVAPNGT-MLIYATRQQGRGVLMLVSINGRVR--------LPLPTAQGE 419 (430)
T ss_pred CCceEEEEEECCCCC--EEEccC-CCCCCCceECCCCC-EEEEEEecCCceEEEEEECCCCce--------EECcCCCCC
Confidence 32 37888988754 233322 22223568999994 5554 444444 55555543221 123334556
Q ss_pred eeEEEEcCC
Q 035558 227 IEQLQWSSS 235 (253)
Q Consensus 227 v~~~~~~~~ 235 (253)
+...+|+|-
T Consensus 420 ~~~p~ws~~ 428 (430)
T PRK00178 420 VREPSWSPY 428 (430)
T ss_pred cCCCccCCC
Confidence 777888874
No 264
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=1.4e-08 Score=76.46 Aligned_cols=228 Identities=12% Similarity=0.141 Sum_probs=146.2
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe-CCCeEEEEeccC-ceeee--eeeccccc--
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS-IDTTCTIWDIER-EAVDT--QLIAHDKE-- 87 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~-~~~~~--~~~~~~~~-- 87 (253)
.|-.|.++..+..+..+....... .+-+.++++ +++++++++. ..|.|.++-++. |.+.. .+..|.+.
T Consensus 65 gvaay~iD~~~G~Lt~ln~~~~~g-----~~p~yvsvd-~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p 138 (346)
T COG2706 65 GVAAYRIDPDDGRLTFLNRQTLPG-----SPPCYVSVD-EDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGP 138 (346)
T ss_pred cEEEEEEcCCCCeEEEeeccccCC-----CCCeEEEEC-CCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCC
Confidence 666676665323333333222222 344789999 8898988886 457899998865 33221 12235444
Q ss_pred --------EEEEEec-CCCeEEEEeC-CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558 88 --------VYDIAWG-GVGVFASVSA-DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV 157 (253)
Q Consensus 88 --------v~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~ 157 (253)
+....+. +++++++... -..|.+|++..+................+.|.|+| ++++..+...=.++|.+
T Consensus 139 ~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v 217 (346)
T COG2706 139 HERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDV 217 (346)
T ss_pred CccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEE
Confidence 7788888 8888887753 34699999996653222222223445788999999 99988887776666999
Q ss_pred EECCCCCCCeeeeccc---------ccceeEEEEecCCCCeEEEec-CCCcEEEEeccCCCCCCCCCCCCeeeccCCCce
Q 035558 158 LDIRFPTLPVVELQRH---------QASVNAIAWAPHSSCHICTAG-DDSQALIWDLSSMGQPVEGGLDPILAYTAGAEI 227 (253)
Q Consensus 158 ~d~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v 227 (253)
|........+..++.+ ......+..+|+| ++|.++. ....|.+|.+....... ........+....
T Consensus 218 ~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~~g~L---~~~~~~~teg~~P 293 (346)
T COG2706 218 LEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPDGGKL---ELVGITPTEGQFP 293 (346)
T ss_pred EEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCC-CEEEEecCCCCeEEEEEEcCCCCEE---EEEEEeccCCcCC
Confidence 9988743223333322 2356778999999 6887776 35588899887654322 0011222345557
Q ss_pred eEEEEcCCCCceEEEEcC-CcEEEEE
Q 035558 228 EQLQWSSSQPDWVAIAFS-TKLQILR 252 (253)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~-~~i~vw~ 252 (253)
+...++|.+++|+++..+ +.+.+++
T Consensus 294 R~F~i~~~g~~Liaa~q~sd~i~vf~ 319 (346)
T COG2706 294 RDFNINPSGRFLIAANQKSDNITVFE 319 (346)
T ss_pred ccceeCCCCCEEEEEccCCCcEEEEE
Confidence 899999999988877654 5577765
No 265
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=8.1e-09 Score=77.67 Aligned_cols=228 Identities=12% Similarity=0.115 Sum_probs=143.7
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC---CeEEEEeccC--ceee--eeeecccc
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID---TTCTIWDIER--EAVD--TQLIAHDK 86 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~--~~~~--~~~~~~~~ 86 (253)
.|++|++++.............- +..+-++|+ ++.+.|.++-.+ |.|-.|.+.. |+.. ........
T Consensus 17 gI~v~~ld~~~g~l~~~~~v~~~------~nptyl~~~-~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~ 89 (346)
T COG2706 17 GIYVFNLDTKTGELSLLQLVAEL------GNPTYLAVN-PDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS 89 (346)
T ss_pred ceEEEEEeCcccccchhhhcccc------CCCceEEEC-CCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC
Confidence 89999998643333333333322 567889999 888888887554 6676666653 4422 22222233
Q ss_pred cEEEEEec-CCCeEEEEeC-CCcEEEEEcCCCCCeeeeeccCCCCC----------CeeEEEeeCCCCCEEEEEEeCCCe
Q 035558 87 EVYDIAWG-GVGVFASVSA-DGSVRVFDLRDKEHSTIIYESSEPDT----------PLVRLGWNKQDPRYMATIIMDSAK 154 (253)
Q Consensus 87 ~v~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~----------~i~~~~~~~~~~~~l~~~~~~~~~ 154 (253)
+.+.++++ ++++++++.. -|.|.++-++....+........|.+ .+....+.| +++++++..-.--.
T Consensus 90 ~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dr 168 (346)
T COG2706 90 PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDR 168 (346)
T ss_pred CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCce
Confidence 44888999 8988888765 68899999976432222111111111 277889999 89888887654434
Q ss_pred EEEEECCCCCCC---eeeecccccceeEEEEecCCCCeEEEec-CCCcEEEEeccCCCCCC----CCCCCCeeeccCCCc
Q 035558 155 VVVLDIRFPTLP---VVELQRHQASVNAIAWAPHSSCHICTAG-DDSQALIWDLSSMGQPV----EGGLDPILAYTAGAE 226 (253)
Q Consensus 155 i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~ 226 (253)
|.+|++..+... ...+ .-......|.|+|++ ++..... .+++|.+|......... .....| .-+.....
T Consensus 169 i~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~-k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP-~dF~g~~~ 245 (346)
T COG2706 169 IFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNG-KYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP-EDFTGTNW 245 (346)
T ss_pred EEEEEcccCcccccccccc-CCCCCcceEEEcCCC-cEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc-cccCCCCc
Confidence 999999865421 1122 234456889999999 5766555 69999999998753211 111112 22334667
Q ss_pred eeEEEEcCCCCceEEEEcC-CcEEEEE
Q 035558 227 IEQLQWSSSQPDWVAIAFS-TKLQILR 252 (253)
Q Consensus 227 v~~~~~~~~~~~~~~~~~~-~~i~vw~ 252 (253)
...|..+|+|++|.++... +.|-+++
T Consensus 246 ~aaIhis~dGrFLYasNRg~dsI~~f~ 272 (346)
T COG2706 246 AAAIHISPDGRFLYASNRGHDSIAVFS 272 (346)
T ss_pred eeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 8899999999977665432 3444443
No 266
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.33 E-value=6.6e-10 Score=89.99 Aligned_cols=171 Identities=13% Similarity=0.140 Sum_probs=111.2
Q ss_pred CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCC---CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC
Q 035558 65 TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSAD---GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ 140 (253)
Q Consensus 65 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 140 (253)
..|.++|..... ...+..+...+...+|+ +++.++.+..+ ..|++||+.+++.... . ...+.+..++|+|
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~---~~~~~~~~~~~sp- 243 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-A---SFPGMNGAPAFSP- 243 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-e---cCCCCccceEECC-
Confidence 368888876443 44455566778899999 99998887654 4799999988753222 1 2223566789999
Q ss_pred CCCEEEEE-EeCC-CeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEec-CCC--cEEEEeccCCCCCCCCCC
Q 035558 141 DPRYMATI-IMDS-AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAG-DDS--QALIWDLSSMGQPVEGGL 215 (253)
Q Consensus 141 ~~~~l~~~-~~~~-~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~ 215 (253)
+++.|+.. +.++ ..|++||+.+.. ...+..+........|+|++. .|+..+ .++ .|.++|+.+.+.
T Consensus 244 Dg~~l~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~s~dg~-~l~~~s~~~g~~~iy~~d~~~~~~------ 314 (417)
T TIGR02800 244 DGSKLAVSLSKDGNPDIYVMDLDGKQ--LTRLTNGPGIDTEPSWSPDGK-SIAFTSDRGGSPQIYMMDADGGEV------ 314 (417)
T ss_pred CCCEEEEEECCCCCccEEEEECCCCC--EEECCCCCCCCCCEEECCCCC-EEEEEECCCCCceEEEEECCCCCE------
Confidence 77766644 3332 238888987643 444554555556789999994 665444 444 466667665431
Q ss_pred CCeeeccCCCceeEEEEcCCCCceEEEEcCC---cEEEEE
Q 035558 216 DPILAYTAGAEIEQLQWSSSQPDWVAIAFST---KLQILR 252 (253)
Q Consensus 216 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~i~vw~ 252 (253)
..+..+......+.|+|+++.++..+.++ .|.+|+
T Consensus 315 --~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d 352 (417)
T TIGR02800 315 --RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMD 352 (417)
T ss_pred --EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEe
Confidence 12333455677889999998777666654 566665
No 267
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.31 E-value=1.5e-10 Score=96.06 Aligned_cols=180 Identities=14% Similarity=0.118 Sum_probs=136.6
Q ss_pred CceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558 5 PDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI 82 (253)
Q Consensus 5 ~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 82 (253)
+..+..|+ . .+-.+|+++. +..+...-.. ..|+-++ .+++.+++|...|+|.+-|.++.+.++++.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~----~e~r~~~v~a-----~~v~imR---~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~ 214 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTE----KETRTTNVSA-----SGVTIMR---YNNRNLFCGDTRGTVFLRDPNSFETIHTFD 214 (1118)
T ss_pred Ccceeecchhhheeeeecccc----eeeeeeeccC-----CceEEEE---ecCcEEEeecccceEEeecCCcCceeeeee
Confidence 44555555 3 7777888775 4444433332 3465555 458999999999999999999999999999
Q ss_pred cccccEEEEEecCCCeEEEEeC---------CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC
Q 035558 83 AHDKEVYDIAWGGVGVFASVSA---------DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA 153 (253)
Q Consensus 83 ~~~~~v~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 153 (253)
+|.+.|.++.. .|++|++|+. |..|++||+|+.+...++....+ ..-+.|+|.-...+++++..|.
T Consensus 215 aHs~siSDfDv-~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~----P~flrf~Psl~t~~~V~S~sGq 289 (1118)
T KOG1275|consen 215 AHSGSISDFDV-QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG----PQFLRFHPSLTTRLAVTSQSGQ 289 (1118)
T ss_pred ccccceeeeec-cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC----chhhhhcccccceEEEEecccc
Confidence 99999987666 5889999875 56689999999875555543332 2567899977888999999998
Q ss_pred eEEEEECCCCCCC---eeeecccccceeEEEEecCCCCeEEEecCCCcEEEEe
Q 035558 154 KVVVLDIRFPTLP---VVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWD 203 (253)
Q Consensus 154 ~i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd 203 (253)
..+.|..+...| +..+......+.++++++++ ..++.|..+|.|.+|.
T Consensus 290 -~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 290 -FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNG-DALAFGDHEGHVNLWA 340 (1118)
T ss_pred -eeeccccccCCCccceeEEccCCCcceeEEecCCC-ceEEEecccCcEeeec
Confidence 999994443333 44444455669999999999 6999999999999997
No 268
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=6.4e-12 Score=99.12 Aligned_cols=168 Identities=20% Similarity=0.195 Sum_probs=120.4
Q ss_pred eeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-------eeeeeeecccccEEEEEec-CCCeEEE
Q 035558 30 KSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-------AVDTQLIAHDKEVYDIAWG-GVGVFAS 101 (253)
Q Consensus 30 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~-~~~~l~~ 101 (253)
+..+.+|. ..|..++-- .+.+.+++++.|.+|++|.++.. .+..+++.|+.+|.++.|. +.+.+++
T Consensus 728 L~nf~GH~-----~~iRai~Ai-dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S 801 (1034)
T KOG4190|consen 728 LCNFTGHQ-----EKIRAIAAI-DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS 801 (1034)
T ss_pred eecccCcH-----HHhHHHHhc-ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee
Confidence 45677887 777777665 67888999999999999998642 2556778999999999999 8778776
Q ss_pred EeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC-CCCEEEEE-EeCCCeEEEEECCCCCCCeeee-----cccc
Q 035558 102 VSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ-DPRYMATI-IMDSAKVVVLDIRFPTLPVVEL-----QRHQ 174 (253)
Q Consensus 102 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~-~~~~~~i~~~d~~~~~~~~~~~-----~~~~ 174 (253)
+ ||-|++||.--+.....+...+.+. .+..+..-|+ +..+++.+ +...+ |+++|.|..+- ..++ .+..
T Consensus 802 c--D~giHlWDPFigr~Laq~~dapk~~-a~~~ikcl~nv~~~iliAgcsaeST-VKl~DaRsce~-~~E~kVcna~~Pn 876 (1034)
T KOG4190|consen 802 C--DGGIHLWDPFIGRLLAQMEDAPKEG-AGGNIKCLENVDRHILIAGCSAEST-VKLFDARSCEW-TCELKVCNAPGPN 876 (1034)
T ss_pred c--cCcceeecccccchhHhhhcCcccC-CCceeEecccCcchheeeeccchhh-heeeecccccc-eeeEEeccCCCCc
Confidence 6 8889999987665444333222222 3333333332 33444444 45555 99999998652 2222 2344
Q ss_pred cceeEEEEecCCCCeEEEecCCCcEEEEeccCCCC
Q 035558 175 ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQ 209 (253)
Q Consensus 175 ~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 209 (253)
..+.+++..|.| +.++.+-..|+|.+.|.++++.
T Consensus 877 a~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~v 910 (1034)
T KOG4190|consen 877 ALTRAIAVADKG-NKLAAALSNGCIAILDARNGKV 910 (1034)
T ss_pred hheeEEEeccCc-chhhHHhcCCcEEEEecCCCce
Confidence 568899999999 6999999999999999999873
No 269
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.30 E-value=2.6e-09 Score=77.24 Aligned_cols=177 Identities=8% Similarity=0.020 Sum_probs=121.7
Q ss_pred CCCCEEEEEeCCCeEEEEeccCcee-eeeeecccccEEEEEe-c-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCC
Q 035558 53 AEPRRIGTSSIDTTCTIWDIEREAV-DTQLIAHDKEVYDIAW-G-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPD 129 (253)
Q Consensus 53 ~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~-~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 129 (253)
.....|+.|+..|...+|...+.+. .+....|...|+-+.= . ...-+..++.|.++++.++..+..........
T Consensus 82 ~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~--- 158 (344)
T KOG4532|consen 82 NKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN--- 158 (344)
T ss_pred ccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc---
Confidence 3456899999999999999986652 3333334443332221 1 23356677889999998887665333332221
Q ss_pred CCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeee--ecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCC
Q 035558 130 TPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE--LQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM 207 (253)
Q Consensus 130 ~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 207 (253)
-...+++.++ ++.++++.+.... |-.|.+....+.+.. ....+..-.+..|+... ..+|++..||++.|||++..
T Consensus 159 ~~~ns~~~sn-d~~~~~~Vgds~~-Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 159 LTQNSLHYSN-DPSWGSSVGDSRR-VFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred cceeeeEEcC-CCceEEEecCCCc-ceEEEeCCccceeeeeEecccCCCceeeeeccCc-ceEEEEecCCcEEEEEeccc
Confidence 2478899999 9999999988887 999998775543322 22334445678899887 58999999999999999998
Q ss_pred CCCCCCCCCCeeeccCCCceeEEEEcCCCC
Q 035558 208 GQPVEGGLDPILAYTAGAEIEQLQWSSSQP 237 (253)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 237 (253)
..|.... ......|.+.+..+.|++-|.
T Consensus 236 ~tpm~~~--sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 236 ATPMAEI--SSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred ccchhhh--cccCCCCCCceEEEEecCCCc
Confidence 7665211 123345899999999998665
No 270
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.29 E-value=9.3e-11 Score=86.33 Aligned_cols=206 Identities=13% Similarity=0.224 Sum_probs=138.7
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce-----eeeeeeccc------------ccEEEEEec---CCCeEEEE
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA-----VDTQLIAHD------------KEVYDIAWG---GVGVFASV 102 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~---~~~~l~~~ 102 (253)
..|+++.|. ..|.++++|...|.|.++..+... ....+++|. ..|..+.|. ....++..
T Consensus 27 d~ItaVefd-~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 27 DKITAVEFD-ETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred ceeeEEEec-cccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 579999999 889999999999999999876433 222344553 468889998 44578888
Q ss_pred eCCCcEEEEEcCCCCCe----------------------------------eeee------ccCCCCCCeeEEEeeCCCC
Q 035558 103 SADGSVRVFDLRDKEHS----------------------------------TIIY------ESSEPDTPLVRLGWNKQDP 142 (253)
Q Consensus 103 ~~dg~i~i~d~~~~~~~----------------------------------~~~~------~~~~~~~~i~~~~~~~~~~ 142 (253)
+.|.+|++|.+...... ..+. ....|...|.++.|+. +.
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~ 184 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DK 184 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-ch
Confidence 89999999998654100 0000 0123445678899987 66
Q ss_pred CEEEEEEeCCCeEEEEECCCCCCC--eeeecccc-----cceeEEEEecCCCCeEEEecCCCcEEEEeccCCC------C
Q 035558 143 RYMATIIMDSAKVVVLDIRFPTLP--VVELQRHQ-----ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG------Q 209 (253)
Q Consensus 143 ~~l~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~-----~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~ 209 (253)
..++++. +=+ |.+|++.-.... +..++.|. .-|++..|+|.....+.-.+..|.|++-|++... .
T Consensus 185 et~lSaD-dLr-INLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLLSAD-DLR-INLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heeeecc-cee-eeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 6666543 334 999998765432 33444443 4689999999876778888889999999998432 1
Q ss_pred CCCCCCC---CeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 210 PVEGGLD---PILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 210 ~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
..+.... ...+.+-...|..+.|+++|+++++ -.-.++++|++
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls-RdyltvkiwDv 308 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS-RDYLTVKIWDV 308 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE-eccceEEEEec
Confidence 1110011 1112233567889999999985554 44467999985
No 271
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=2.4e-09 Score=87.07 Aligned_cols=204 Identities=14% Similarity=0.115 Sum_probs=117.1
Q ss_pred CCceEEeec----C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEE-EeCCCe--EEEEeccCc
Q 035558 4 KPDLLATSS----D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGT-SSIDTT--CTIWDIERE 75 (253)
Q Consensus 4 ~~~~l~~~~----~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~--i~vwd~~~~ 75 (253)
+|+.|+..+ . .|.+||+.++ ..+.+..+. ......+|+ |+++.|+. .+.+|. |+++|++++
T Consensus 228 DG~~La~~s~~~g~~~L~~~dl~tg--~~~~lt~~~--------g~~~~~~wS-PDG~~La~~~~~~g~~~Iy~~dl~tg 296 (448)
T PRK04792 228 DGRKLAYVSFENRKAEIFVQDIYTQ--VREKVTSFP--------GINGAPRFS-PDGKKLALVLSKDGQPEIYVVDIATK 296 (448)
T ss_pred CCCEEEEEEecCCCcEEEEEECCCC--CeEEecCCC--------CCcCCeeEC-CCCCEEEEEEeCCCCeEEEEEECCCC
Confidence 455555432 1 6888888774 111222222 223467899 78887654 556664 788888877
Q ss_pred eeeeeeecccccEEEEEec-CCCeEEEEeC-CC--cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC
Q 035558 76 AVDTQLIAHDKEVYDIAWG-GVGVFASVSA-DG--SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMD 151 (253)
Q Consensus 76 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 151 (253)
+.. .+..+.......+|+ +++.++..+. ++ .|.++|+.+++...... ... .....+|+| +++.++..+.+
T Consensus 297 ~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~--~g~--~~~~~~~Sp-DG~~l~~~~~~ 370 (448)
T PRK04792 297 ALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF--EGE--QNLGGSITP-DGRSMIMVNRT 370 (448)
T ss_pred CeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec--CCC--CCcCeeECC-CCCEEEEEEec
Confidence 643 344455556778999 8887766553 44 46666776665322221 111 234568999 88888777664
Q ss_pred CC--eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCc--EEEEeccCCCCCCCCCCCCeeeccCCCce
Q 035558 152 SA--KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQ--ALIWDLSSMGQPVEGGLDPILAYTAGAEI 227 (253)
Q Consensus 152 ~~--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~v 227 (253)
+. .|.++|+.++. ...+... .......|+|+|..++++...++. +.+++..... . ..+..+.+.+
T Consensus 371 ~g~~~I~~~dl~~g~--~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~-~-------~~l~~~~g~~ 439 (448)
T PRK04792 371 NGKFNIARQDLETGA--MQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRF-K-------ARLPAGQGEV 439 (448)
T ss_pred CCceEEEEEECCCCC--eEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc-e-------EECcCCCCCc
Confidence 43 35667777654 2333222 122345899999534444545554 5566653322 1 2333445567
Q ss_pred eEEEEcCC
Q 035558 228 EQLQWSSS 235 (253)
Q Consensus 228 ~~~~~~~~ 235 (253)
...+|+|-
T Consensus 440 ~~p~Wsp~ 447 (448)
T PRK04792 440 KSPAWSPF 447 (448)
T ss_pred CCCccCCC
Confidence 78888873
No 272
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.28 E-value=7.1e-09 Score=80.72 Aligned_cols=146 Identities=14% Similarity=0.137 Sum_probs=111.1
Q ss_pred CCCCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCC-eEEEEeccCceee
Q 035558 1 ECQKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT-TCTIWDIEREAVD 78 (253)
Q Consensus 1 sp~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~ 78 (253)
++.+|++++..+. ...+.+...+ -.++ -+|. ..|.-..+. .+++-++.|..|| .+-|+|.++++..
T Consensus 328 a~~~Gd~ia~VSRGkaFi~~~~~~----~~iq--v~~~-----~~VrY~r~~-~~~e~~vigt~dgD~l~iyd~~~~e~k 395 (668)
T COG4946 328 AVVNGDYIALVSRGKAFIMRPWDG----YSIQ--VGKK-----GGVRYRRIQ-VDPEGDVIGTNDGDKLGIYDKDGGEVK 395 (668)
T ss_pred ccCCCcEEEEEecCcEEEECCCCC----eeEE--cCCC-----CceEEEEEc-cCCcceEEeccCCceEEEEecCCceEE
Confidence 4678999999987 8777776664 2222 2444 567777777 6777899999999 8999999987744
Q ss_pred eeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC---Ce
Q 035558 79 TQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS---AK 154 (253)
Q Consensus 79 ~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~---~~ 154 (253)
. +...-+.|.++..+ +|.+++.+.....+.+.|+.+++.. .+ .....+-|+.+.|+| +++++|-+--+| +.
T Consensus 396 r-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~-~i--dkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~ 470 (668)
T COG4946 396 R-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR-LI--DKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQS 470 (668)
T ss_pred E-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee-Ee--cccccceeEEEEEcC-CceeEEEecCcceeeee
Confidence 4 44466889999999 9999999999999999999998732 22 223445899999999 999999775554 24
Q ss_pred EEEEECCCC
Q 035558 155 VVVLDIRFP 163 (253)
Q Consensus 155 i~~~d~~~~ 163 (253)
|+++|+...
T Consensus 471 Iklydm~~~ 479 (668)
T COG4946 471 IKLYDMDGG 479 (668)
T ss_pred EEEEecCCC
Confidence 889988754
No 273
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.27 E-value=2.2e-10 Score=86.78 Aligned_cols=155 Identities=11% Similarity=0.060 Sum_probs=106.1
Q ss_pred eEEEecCCCCCEEEEEeCCCeEEEEeccCcee----eeeeecccccEEEEEec-CCCeEEEEeCC---CcEEEEEcCCCC
Q 035558 46 TSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV----DTQLIAHDKEVYDIAWG-GVGVFASVSAD---GSVRVFDLRDKE 117 (253)
Q Consensus 46 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~-~~~~l~~~~~d---g~i~i~d~~~~~ 117 (253)
..+..+ ++++++|.+..+....++++..... ..... -...-+++.|. +......+..- ..+.+|....+.
T Consensus 66 ~~~~~s-~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 66 ALVLTS-DSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccC-CCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 344455 7888999998888877777654332 22111 22233445555 44444444433 444444444332
Q ss_pred CeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeee-ecccccceeEEEEecCCCCeEEEecCC
Q 035558 118 HSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE-LQRHQASVNAIAWAPHSSCHICTAGDD 196 (253)
Q Consensus 118 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~d 196 (253)
.....+|.+.++.++|+| |+++|+++..|+. |++-....... +.. ..+|...|..++.-++. .|+++|.|
T Consensus 144 ----~~~~lGhvSml~dVavS~-D~~~IitaDRDEk-IRvs~ypa~f~-IesfclGH~eFVS~isl~~~~--~LlS~sGD 214 (390)
T KOG3914|consen 144 ----CEPILGHVSMLLDVAVSP-DDQFIITADRDEK-IRVSRYPATFV-IESFCLGHKEFVSTISLTDNY--LLLSGSGD 214 (390)
T ss_pred ----cchhhhhhhhhheeeecC-CCCEEEEecCCce-EEEEecCcccc-hhhhccccHhheeeeeeccCc--eeeecCCC
Confidence 223347778999999999 8899999999998 99877765443 333 45699999999998874 69999999
Q ss_pred CcEEEEeccCCCCCC
Q 035558 197 SQALIWDLSSMGQPV 211 (253)
Q Consensus 197 g~i~iwd~~~~~~~~ 211 (253)
+++++||+++++.+.
T Consensus 215 ~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 215 KTLRLWDITSGKLLD 229 (390)
T ss_pred CcEEEEecccCCccc
Confidence 999999999988653
No 274
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.25 E-value=5.2e-08 Score=75.65 Aligned_cols=231 Identities=10% Similarity=0.053 Sum_probs=137.1
Q ss_pred CCCCCceEEeec---------C--cEEEEEccCCccccceeeeecCCCCcc--ccCCeeEEEecCCCCCEEEEEe-C-CC
Q 035558 1 ECQKPDLLATSS---------D--FLRVWRISDEDRRVELKSLLNGNKNSE--YCGPLTSFDWNEAEPRRIGTSS-I-DT 65 (253)
Q Consensus 1 sp~~~~~l~~~~---------~--~v~iw~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~-~-dg 65 (253)
||+...+.++.+ + .|.+||..+. +....+....... ....-..++++ +++++|+... . +.
T Consensus 54 spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~----~~~~~i~~p~~p~~~~~~~~~~~~ls-~dgk~l~V~n~~p~~ 128 (352)
T TIGR02658 54 ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH----LPIADIELPEGPRFLVGTYPWMTSLT-PDNKTLLFYQFSPSP 128 (352)
T ss_pred CCCCCEEEEEeccccccccCCCCCEEEEEECccC----cEEeEEccCCCchhhccCccceEEEC-CCCCEEEEecCCCCC
Confidence 567777777776 4 9999999997 7776665433111 00223467888 8999888765 3 68
Q ss_pred eEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccC--C-----CCCCeeEEEee
Q 035558 66 TCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESS--E-----PDTPLVRLGWN 138 (253)
Q Consensus 66 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~-----~~~~i~~~~~~ 138 (253)
.|.+.|+.+++.+..+... +...-...+ ...+..-+.||......+............. . ...+ .|.
T Consensus 129 ~V~VvD~~~~kvv~ei~vp-~~~~vy~t~-e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~ 202 (352)
T TIGR02658 129 AVGVVDLEGKAFVRMMDVP-DCYHIFPTA-NDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYS 202 (352)
T ss_pred EEEEEECCCCcEEEEEeCC-CCcEEEEec-CCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC----ceE
Confidence 9999999999988877642 222222222 2222233456655554444332211111000 0 0112 345
Q ss_pred CCCCCEEEEEEeCCCeEEEEECCCCC----CCeeeec-------ccccceeEEEEecCCCCeEEEec----------CCC
Q 035558 139 KQDPRYMATIIMDSAKVVVLDIRFPT----LPVVELQ-------RHQASVNAIAWAPHSSCHICTAG----------DDS 197 (253)
Q Consensus 139 ~~~~~~l~~~~~~~~~i~~~d~~~~~----~~~~~~~-------~~~~~i~~~~~~~~~~~~l~~~~----------~dg 197 (253)
+.++.++.+... |. |.+.|+.... .+...+. -..+.+.-++++|++. .++... ..+
T Consensus 203 ~~dg~~~~vs~e-G~-V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~-~lyV~~~~~~~~thk~~~~ 279 (352)
T TIGR02658 203 NKSGRLVWPTYT-GK-IFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD-RIYLLADQRAKWTHKTASR 279 (352)
T ss_pred cCCCcEEEEecC-Ce-EEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC-EEEEEecCCccccccCCCC
Confidence 546666665544 76 9999975432 1122211 1233444599999995 555532 225
Q ss_pred cEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC-ceEEEE-cCCcEEEEEC
Q 035558 198 QALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP-DWVAIA-FSTKLQILRV 253 (253)
Q Consensus 198 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-~~~~i~vw~l 253 (253)
.|.++|..+.+.. ....-...+..++++|+++ .+++.. .++.|.++|+
T Consensus 280 ~V~ViD~~t~kvi--------~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 280 FLFVVDAKTGKRL--------RKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred EEEEEECCCCeEE--------EEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence 7999999887643 2223456899999999998 666555 5777888874
No 275
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.25 E-value=4.1e-11 Score=97.43 Aligned_cols=199 Identities=15% Similarity=0.286 Sum_probs=150.4
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-eeeeeeeccc--ccEEEEEec---CCCeEEEEeCCCcEEEEEcCCC
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-AVDTQLIAHD--KEVYDIAWG---GVGVFASVSADGSVRVFDLRDK 116 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~--~~v~~~~~~---~~~~l~~~~~dg~i~i~d~~~~ 116 (253)
+.+.++..+ |.++-++.++.-| +.+.|+... ....-+. |- -.|-++.|+ ...+-++......-.+|++...
T Consensus 25 ~~~~a~si~-p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 25 GGFNAVSIN-PSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred Ccccceeec-cccchhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 467788888 7788888888776 556676543 2222222 22 345677787 2334444444555678998876
Q ss_pred CCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCC
Q 035558 117 EHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDD 196 (253)
Q Consensus 117 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 196 (253)
....+-+...+|...|+.+-|+|.....+++++.|.. ++.||+++...++.....-...-..++|+-..+ .+.+.+..
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~-vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p-~vlasshg 179 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTY-VHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDP-NVLASSHG 179 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeecccccc-ceeeeccCCCcceeeeecccccCceeeecccCc-chhhhccC
Confidence 6555556666788899999999999999999999998 999999999888887776666778899998776 45555667
Q ss_pred CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC-CCceEEEEcCCcEEEEE
Q 035558 197 SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS-QPDWVAIAFSTKLQILR 252 (253)
Q Consensus 197 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~i~vw~ 252 (253)
+.|++||++.+..|. ....+|...|+.++|... ...+++.+.|+.++.|+
T Consensus 180 ~~i~vwd~r~gs~pl------~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~ 230 (1081)
T KOG0309|consen 180 NDIFVWDLRKGSTPL------CSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWD 230 (1081)
T ss_pred CceEEEeccCCCcce------EEecccceeeehHHHhhhhhhhhcccCCCCceeeec
Confidence 889999999999876 677789999999999764 23477899999999996
No 276
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.25 E-value=3.8e-10 Score=85.54 Aligned_cols=154 Identities=10% Similarity=0.067 Sum_probs=106.8
Q ss_pred EEEEEec-CCCeEEEEeCCCcEEEEEcCCCCC-eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC--eEEEEECCCC
Q 035558 88 VYDIAWG-GVGVFASVSADGSVRVFDLRDKEH-STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA--KVVVLDIRFP 163 (253)
Q Consensus 88 v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~--~i~~~d~~~~ 163 (253)
+..+..+ .++++|.+..+....+++++...+ .+........ ..-+.+.|.. +.....++...|- .+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~-~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~- 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP-KRPTAISFIR-EDTSVLVADKAGDVYSFDILSADS- 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc-cCcceeeeee-ccceEEEEeecCCceeeeeecccc-
Confidence 3444555 788888888888888888876653 2222211111 1334455554 3344444443333 244444443
Q ss_pred CCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEE
Q 035558 164 TLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA 243 (253)
Q Consensus 164 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 243 (253)
.+...+.+|-..++.++|+||+ ++++++..|..|+|-......... ....+|..-|..++.-++.. |+++|
T Consensus 142 -~~~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~Ie------sfclGH~eFVS~isl~~~~~-LlS~s 212 (390)
T KOG3914|consen 142 -GRCEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFVIE------SFCLGHKEFVSTISLTDNYL-LLSGS 212 (390)
T ss_pred -cCcchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccchh------hhccccHhheeeeeeccCce-eeecC
Confidence 3356677899999999999999 799999999999998777655333 46778999999999998864 88999
Q ss_pred cCCcEEEEEC
Q 035558 244 FSTKLQILRV 253 (253)
Q Consensus 244 ~~~~i~vw~l 253 (253)
.|+++++|++
T Consensus 213 GD~tlr~Wd~ 222 (390)
T KOG3914|consen 213 GDKTLRLWDI 222 (390)
T ss_pred CCCcEEEEec
Confidence 9999999985
No 277
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.24 E-value=1.1e-08 Score=79.73 Aligned_cols=217 Identities=12% Similarity=0.042 Sum_probs=145.2
Q ss_pred CCCceEEeec-CcEEEEEccCCccccceeee-ec---CCCCccccCCeeEEE-ecCCCCCEEEEEeCCCeEEEEeccCce
Q 035558 3 QKPDLLATSS-DFLRVWRISDEDRRVELKSL-LN---GNKNSEYCGPLTSFD-WNEAEPRRIGTSSIDTTCTIWDIEREA 76 (253)
Q Consensus 3 ~~~~~l~~~~-~~v~iw~~~~~~~~~~~~~~-~~---~~~~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~vwd~~~~~ 76 (253)
.+|..++-.. +.|.+||..+. ..+.+.. +. ..+.+.+..+..-+. |++.++++++..+. |...+.+...+-
T Consensus 276 sDGkrIvFq~~GdIylydP~td--~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~ 352 (668)
T COG4946 276 SDGKRIVFQNAGDIYLYDPETD--SLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY 352 (668)
T ss_pred CCCcEEEEecCCcEEEeCCCcC--cceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe
Confidence 3555555544 49999999873 1111111 01 111111112222233 66678999999886 678888776665
Q ss_pred eeeeeecccccEEEEEec-CCCeEEEEeCCC-cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCe
Q 035558 77 VDTQLIAHDKEVYDIAWG-GVGVFASVSADG-SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAK 154 (253)
Q Consensus 77 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~ 154 (253)
.++. +|.+.|.-..+. +++-++.|..|| .+-++|.++++.... ...-+.|.++..+| +++.++++.....
T Consensus 353 ~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~----e~~lg~I~av~vs~-dGK~~vvaNdr~e- 424 (668)
T COG4946 353 SIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI----EKDLGNIEAVKVSP-DGKKVVVANDRFE- 424 (668)
T ss_pred eEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe----eCCccceEEEEEcC-CCcEEEEEcCceE-
Confidence 5542 467778888888 888999999999 899999998863222 23445899999999 9999888876666
Q ss_pred EEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCC----cEEEEeccCCCCCCCCCCCCeeeccCCCceeEE
Q 035558 155 VVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDS----QALIWDLSSMGQPVEGGLDPILAYTAGAEIEQL 230 (253)
Q Consensus 155 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~ 230 (253)
+.++|+.++.. ...-+...+-|+..+|+|++ +++|-+--+| .|+++|+..++... .......=.+-
T Consensus 425 l~vididngnv-~~idkS~~~lItdf~~~~ns-r~iAYafP~gy~tq~Iklydm~~~Kiy~--------vTT~ta~DfsP 494 (668)
T COG4946 425 LWVIDIDNGNV-RLIDKSEYGLITDFDWHPNS-RWIAYAFPEGYYTQSIKLYDMDGGKIYD--------VTTPTAYDFSP 494 (668)
T ss_pred EEEEEecCCCe-eEecccccceeEEEEEcCCc-eeEEEecCcceeeeeEEEEecCCCeEEE--------ecCCcccccCc
Confidence 99999998763 23333456789999999999 6898776554 78999998876321 11122222345
Q ss_pred EEcCCCCceE
Q 035558 231 QWSSSQPDWV 240 (253)
Q Consensus 231 ~~~~~~~~~~ 240 (253)
+|.|++++|.
T Consensus 495 aFD~d~ryLY 504 (668)
T COG4946 495 AFDPDGRYLY 504 (668)
T ss_pred ccCCCCcEEE
Confidence 7788887654
No 278
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=3.6e-09 Score=86.83 Aligned_cols=227 Identities=16% Similarity=0.161 Sum_probs=161.1
Q ss_pred CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCC-----------CCEEEEEeCCCeEEEEec
Q 035558 5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAE-----------PRRIGTSSIDTTCTIWDI 72 (253)
Q Consensus 5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~l~~~~~dg~i~vwd~ 72 (253)
+.++|-|+. .|.+-|..+- +.++.+..|+ ..|+.+.|.|.. .-+||++...|.|.+||+
T Consensus 26 ~GLiAygshslV~VVDs~s~----q~iqsie~h~-----s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~ 96 (1062)
T KOG1912|consen 26 SGLIAYGSHSLVSVVDSRSL----QLIQSIELHQ-----SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF 96 (1062)
T ss_pred cceEEEecCceEEEEehhhh----hhhhccccCc-----cceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence 457888887 8999998875 8899999999 899999998521 236788889999999999
Q ss_pred cCceeeeeeecccccEEEEEec----CC-CeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEE
Q 035558 73 EREAVDTQLIAHDKEVYDIAWG----GV-GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 147 (253)
Q Consensus 73 ~~~~~~~~~~~~~~~v~~~~~~----~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 147 (253)
..+..+..+..|..++.+++|- +. ..|+.-....++.+|+..+++ .+...........|+.+.|.+.+.+..
T Consensus 97 ~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~---k~Wk~~ys~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 97 VLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE---KFWKYDYSHEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred hhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc---eeeccccCCcceeeeeeCCCCcceEEE
Confidence 9998888888899999999997 23 467777778899999999997 455544444477889999999999888
Q ss_pred EEeCCCeEEEEECCCCCC---Ceeeec---cccc-------------------------ceeEEEEecCCCCeEEEecCC
Q 035558 148 IIMDSAKVVVLDIRFPTL---PVVELQ---RHQA-------------------------SVNAIAWAPHSSCHICTAGDD 196 (253)
Q Consensus 148 ~~~~~~~i~~~d~~~~~~---~~~~~~---~~~~-------------------------~i~~~~~~~~~~~~l~~~~~d 196 (253)
-+..|. +.+.+.-...+ +.+.++ .|.. ....++|+|.-. -++....-
T Consensus 174 l~s~g~-vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~r-n~lfi~~p 251 (1062)
T KOG1912|consen 174 LGSKGF-VLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWR-NILFITFP 251 (1062)
T ss_pred EccCce-EEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhh-ceEEEEec
Confidence 888887 66665432221 122211 1211 112356788653 33333456
Q ss_pred CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC--CceEEEEcCCcEEEEE
Q 035558 197 SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ--PDWVAIAFSTKLQILR 252 (253)
Q Consensus 197 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~i~vw~ 252 (253)
..+.++|++-..... ...-..+.+.-+.|-|+. ..+++.-.+|.+.+|.
T Consensus 252 rellv~dle~~~~l~-------vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 252 RELLVFDLEYECCLA-------VVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred cceEEEcchhhceeE-------EEEeccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence 779999998765433 222233444455666654 4577999999999884
No 279
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=4.1e-10 Score=91.57 Aligned_cols=221 Identities=15% Similarity=0.290 Sum_probs=154.0
Q ss_pred CCceEEeec-C-cEEEEEccCCc-----------cccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEE
Q 035558 4 KPDLLATSS-D-FLRVWRISDED-----------RRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIW 70 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~-----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 70 (253)
+..++|+|+ + .+++..+.+.. ..+...+++.||. +.|.-+.|+ .+.+.|-+...+|.|.||
T Consensus 25 e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~-----~sV~vvTWN-e~~QKLTtSDt~GlIiVW 98 (1189)
T KOG2041|consen 25 ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHN-----ASVMVVTWN-ENNQKLTTSDTSGLIIVW 98 (1189)
T ss_pred cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCc-----ceEEEEEec-cccccccccCCCceEEEE
Confidence 345788877 4 88888876531 1233456788998 999999999 788889999999999999
Q ss_pred eccCceeeeeee--cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEE
Q 035558 71 DIEREAVDTQLI--AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 147 (253)
Q Consensus 71 d~~~~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 147 (253)
-+-.+.-...+. ..++.|.+++|+ +|..+...-.||.|.+=.++.+. +....-.......+.|++ +...++.
T Consensus 99 mlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR----IwgKeLkg~~l~hv~ws~-D~~~~Lf 173 (1189)
T KOG2041|consen 99 MLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR----IWGKELKGQLLAHVLWSE-DLEQALF 173 (1189)
T ss_pred eeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce----ecchhcchheccceeecc-cHHHHHh
Confidence 998776333332 346788999999 99999999999999888777664 222212222456788999 7777777
Q ss_pred EEeCCCeEEEEECCCCCC------Ceee----ecccccceeEEEEe--------cCCCCeEEEecCCCcEEEEeccCCCC
Q 035558 148 IIMDSAKVVVLDIRFPTL------PVVE----LQRHQASVNAIAWA--------PHSSCHICTAGDDSQALIWDLSSMGQ 209 (253)
Q Consensus 148 ~~~~~~~i~~~d~~~~~~------~~~~----~~~~~~~i~~~~~~--------~~~~~~l~~~~~dg~i~iwd~~~~~~ 209 (253)
+-..|. +++||....-. +... +......|..+.|. |+.+ .|+.+-..|.+.|-.-.+...
T Consensus 174 ~~ange-~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 174 KKANGE-THLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred hhcCCc-EEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEcCceehhhhhcCCCC
Confidence 777777 99999764211 1000 11111235555554 5775 899999999999876655544
Q ss_pred CCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcC
Q 035558 210 PVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFS 245 (253)
Q Consensus 210 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 245 (253)
| .....+-.+....|+++|..++.+|.+
T Consensus 252 P--------vv~dtgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 252 P--------VVVDTGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred C--------eEEecccEeecceecCCCcEEEEccCc
Confidence 4 334445789999999999865555544
No 280
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.18 E-value=2.8e-10 Score=81.72 Aligned_cols=195 Identities=13% Similarity=0.077 Sum_probs=119.7
Q ss_pred eeEEEecCCCCCEEEEEeCCCeEEEEeccCceee------------eeeecccccEEEEEec-CCCeEEEEeCCCcEEEE
Q 035558 45 LTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD------------TQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVF 111 (253)
Q Consensus 45 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~------------~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~ 111 (253)
|+.+.+. ....|+++..++.+.....-++.+. ..+..|.++-.+-+.+ .++-++++..||.+.++
T Consensus 39 ~~~~~~v--~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLS--AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeech--hhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 6666665 3455667766766665554433322 2222233322222223 56778999999999999
Q ss_pred EcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE-----eCCCeEEEEECCCCCCCeeeecccccceeEEEEecCC
Q 035558 112 DLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII-----MDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHS 186 (253)
Q Consensus 112 d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-----~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 186 (253)
+.+... +...........-.+.+... .++.+.+++ .-+. .+.|+++..+..+...+. ...|.+++-+|..
T Consensus 117 s~~~~~--~~~~~i~~~~~~~as~~~~~-~~~~i~s~~~g~~n~~d~-~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~q 191 (319)
T KOG4714|consen 117 STDKDL--ALMSRIPSIHSGSASRKICR-HGNSILSGGCGNWNAQDN-FYANTLDPIKTLIPSKKA-LDAVTALCSHPAQ 191 (319)
T ss_pred echHHH--hhhhhcccccccccccceee-cccEEecCCcceEeeccc-eeeecccccccccccccc-cccchhhhCCccc
Confidence 987632 11111111111111122222 334443322 1223 667777654322222222 2349999999987
Q ss_pred CCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC-CceEEEEcCCcEEEEE
Q 035558 187 SCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ-PDWVAIAFSTKLQILR 252 (253)
Q Consensus 187 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~i~vw~ 252 (253)
.+++++|+.||.+.+||.++...|. ..+..|..+++.+-|+|.. ..|++++.||.+-.|+
T Consensus 192 q~~v~cgt~dg~~~l~d~rn~~~p~------S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 192 QHLVCCGTDDGIVGLWDARNVAMPV------SLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred ccEEEEecCCCeEEEEEcccccchH------HHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 6788999999999999999987665 5677899999999999965 4688999999998886
No 281
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=6.1e-10 Score=88.23 Aligned_cols=192 Identities=16% Similarity=0.265 Sum_probs=133.4
Q ss_pred CCceEEeec-C-cEEEEEccCCcccc---ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRV---ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD 78 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 78 (253)
+.+-+++++ | +|++|.+....+.. .+..+++.|+ .+|.++.|- .+-+.+++ .||-|.+||.-.++.+
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHk-----k~i~~igfL-~~lr~i~S--cD~giHlWDPFigr~L 817 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHK-----KPIHDIGFL-ADLRSIAS--CDGGIHLWDPFIGRLL 817 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhcc-----Ccccceeee-eccceeee--ccCcceeecccccchh
Confidence 334455555 6 99999997643333 4788899999 899999998 66667665 4788999998777755
Q ss_pred eeee-----cccccEEEEEecCCCeEE-EEeCCCcEEEEEcCCCCCeeeee--ccCCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558 79 TQLI-----AHDKEVYDIAWGGVGVFA-SVSADGSVRVFDLRDKEHSTIIY--ESSEPDTPLVRLGWNKQDPRYMATIIM 150 (253)
Q Consensus 79 ~~~~-----~~~~~v~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~ 150 (253)
..+. +..+.|.++.--+...++ .++...+|+++|-+..+-..... ....++.-+.+++..| .|+.++++-.
T Consensus 818 aq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LS 896 (1034)
T KOG4190|consen 818 AQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALS 896 (1034)
T ss_pred HhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhc
Confidence 5332 222344444332444444 44789999999999876433332 3355666789999998 9999999999
Q ss_pred CCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEE-EeccCCC
Q 035558 151 DSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALI-WDLSSMG 208 (253)
Q Consensus 151 ~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~ 208 (253)
+|. |.+.|.|++.. +...+.-+.....++- |.. +.|+....|.++.+ |..-.+.
T Consensus 897 nGc-i~~LDaR~G~v-INswrpmecdllqlaa-psd-q~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 897 NGC-IAILDARNGKV-INSWRPMECDLLQLAA-PSD-QALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred CCc-EEEEecCCCce-eccCCcccchhhhhcC-chh-HHHHhhcccceeEeeehhcCCe
Confidence 998 99999998764 5555544444444443 444 57888888999998 8766554
No 282
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.14 E-value=3e-09 Score=88.65 Aligned_cols=186 Identities=12% Similarity=0.107 Sum_probs=138.0
Q ss_pred CCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeE
Q 035558 55 PRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVR 134 (253)
Q Consensus 55 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 134 (253)
+..++-|+....+..+|+++.+..+...-..+.|.-|+. +++.+.+|...|+|.+-|.++-+ .+.....|.+.|..
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~-Nnr~lf~G~t~G~V~LrD~~s~~---~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY-NNRNLFCGDTRGTVFLRDPNSFE---TIHTFDAHSGSISD 222 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe-cCcEEEeecccceEEeecCCcCc---eeeeeeccccceee
Confidence 455666666667888899888877766544445666665 58899999999999999998887 45555677777777
Q ss_pred EEeeCCCCCEEEEEEeCCC--------eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccC
Q 035558 135 LGWNKQDPRYMATIIMDSA--------KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSS 206 (253)
Q Consensus 135 ~~~~~~~~~~l~~~~~~~~--------~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 206 (253)
+.. .|++|+++|...+ .|+|||+|+.+. +..+.-+.++ .-+.|+|.-...+++++..|...+-|..+
T Consensus 223 fDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 223 FDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred eec---cCCeEEEeecccccccccccchhhhhhhhhhhc-cCCcccccCc-hhhhhcccccceEEEEecccceeeccccc
Confidence 665 7899999987653 279999998764 4434433333 56789998767899999999999999665
Q ss_pred CCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 207 MGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
...|. .........+..+.++.+++++..++.+..+|.|.+|.
T Consensus 298 lsNP~---~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 298 LSNPP---AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cCCCc---cceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 55443 11233444566799999999999777888999999994
No 283
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.7e-08 Score=77.03 Aligned_cols=84 Identities=21% Similarity=0.388 Sum_probs=71.7
Q ss_pred ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec--CCCeEEEEeCC
Q 035558 28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG--GVGVFASVSAD 105 (253)
Q Consensus 28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d 105 (253)
+....+..+. ..|.+++|+|.+..++..++.+..|+|.|+++...+..+..+ ..+++++|. +.+++..|-..
T Consensus 184 kssq~lp~~g-----~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~n 257 (463)
T KOG1645|consen 184 KSSQILPGEG-----SFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQN 257 (463)
T ss_pred chhhcccccc-----hhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccC
Confidence 4444556666 789999999766678999999999999999999988888877 789999999 66788888899
Q ss_pred CcEEEEEcCCCC
Q 035558 106 GSVRVFDLRDKE 117 (253)
Q Consensus 106 g~i~i~d~~~~~ 117 (253)
|.|.+||++..+
T Consensus 258 G~VlvyD~R~~~ 269 (463)
T KOG1645|consen 258 GMVLVYDMRQPE 269 (463)
T ss_pred ceEEEEEccCCC
Confidence 999999999765
No 284
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=3.4e-08 Score=78.32 Aligned_cols=225 Identities=16% Similarity=0.264 Sum_probs=134.9
Q ss_pred CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC-----------CCeEEEE
Q 035558 3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI-----------DTTCTIW 70 (253)
Q Consensus 3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~i~vw 70 (253)
|.|.+|++--. .|.+|--.. +..++.+ .|. .|.-+.|| |+.++|++-+. ...++||
T Consensus 220 P~GTYL~t~Hk~GI~lWGG~~----f~r~~RF-~Hp------~Vq~idfS-P~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 220 PKGTYLVTFHKQGIALWGGES----FDRIQRF-YHP------GVQFIDFS-PNEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred CCceEEEEEeccceeeecCcc----HHHHHhc-cCC------CceeeecC-CccceEEEecCCccccCcccCCCceEEEE
Confidence 45778888777 899996444 2444444 343 58889999 89999998652 2579999
Q ss_pred eccCceeeeeeecc--cccEE-EEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEE
Q 035558 71 DIEREAVDTQLIAH--DKEVY-DIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMA 146 (253)
Q Consensus 71 d~~~~~~~~~~~~~--~~~v~-~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 146 (253)
|+.+|.....+... ...++ -..|+ ++.++|.-..+ .|.||+..+-. .+....-.-..|....|+| .+++||
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~---lld~Kslki~gIr~FswsP-~~~llA 362 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFM---LLDKKSLKISGIRDFSWSP-TSNLLA 362 (698)
T ss_pred EccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCcee---eecccccCCccccCcccCC-CcceEE
Confidence 99999988877652 22222 46889 89988877664 58888765422 1111111122455566666 444444
Q ss_pred EEEeC---------------------------------------------------------CCeEEEEECCCCCCCeee
Q 035558 147 TIIMD---------------------------------------------------------SAKVVVLDIRFPTLPVVE 169 (253)
Q Consensus 147 ~~~~~---------------------------------------------------------~~~i~~~d~~~~~~~~~~ 169 (253)
-=... .+ +-|+.++....|+..
T Consensus 363 Ywtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n-~eIfrireKdIpve~ 441 (698)
T KOG2314|consen 363 YWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSN-LEIFRIREKDIPVEV 441 (698)
T ss_pred EEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEee-EEEEEeeccCCCcee
Confidence 21100 01 223333332223322
Q ss_pred ecccccceeEEEEecCCCCeEEEecC--CCcEEEEeccC-CCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE---E
Q 035558 170 LQRHQASVNAIAWAPHSSCHICTAGD--DSQALIWDLSS-MGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI---A 243 (253)
Q Consensus 170 ~~~~~~~i~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~ 243 (253)
+. -...|...+|.|.|+++.+..+. ..++.+|.+++ ...+. ....-.....+.+.|+|.|+.++++ +
T Consensus 442 ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~------lVk~~dk~~~N~vfwsPkG~fvvva~l~s 514 (698)
T KOG2314|consen 442 VE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS------LVKELDKKFANTVFWSPKGRFVVVAALVS 514 (698)
T ss_pred ee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchh------hhhhhcccccceEEEcCCCcEEEEEEecc
Confidence 22 24567888999999755554443 47889999884 33322 1111123567889999999976643 3
Q ss_pred cCCcEEEEE
Q 035558 244 FSTKLQILR 252 (253)
Q Consensus 244 ~~~~i~vw~ 252 (253)
..+.+.+++
T Consensus 515 ~~g~l~F~D 523 (698)
T KOG2314|consen 515 RRGDLEFYD 523 (698)
T ss_pred cccceEEEe
Confidence 456666665
No 285
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.11 E-value=9.4e-08 Score=85.09 Aligned_cols=159 Identities=11% Similarity=0.048 Sum_probs=106.2
Q ss_pred eeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec---------------ccccEEEEEec-CCC-eEEEEeCCCc
Q 035558 45 LTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA---------------HDKEVYDIAWG-GVG-VFASVSADGS 107 (253)
Q Consensus 45 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---------------~~~~v~~~~~~-~~~-~l~~~~~dg~ 107 (253)
-..++++|.++.++++.+.++.|++||..++... .+.+ .-.....++++ +++ ++++-+.++.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 3578999446777788788899999999776532 1111 01235678998 776 5566667899
Q ss_pred EEEEEcCCCCCeeeee----------ccCCC--------CCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeee
Q 035558 108 VRVFDLRDKEHSTIIY----------ESSEP--------DTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE 169 (253)
Q Consensus 108 i~i~d~~~~~~~~~~~----------~~~~~--------~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~ 169 (253)
|++||+.++....... ..... -.....+++++ +++++++-..++. |++||..+.. +..
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~r-IrviD~~tg~--v~t 839 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHK-IKKLDPATKR--VTT 839 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCE-EEEEECCCCe--EEE
Confidence 9999998764211110 00000 11345788998 7877666666666 9999987643 222
Q ss_pred ecc--------------cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCC
Q 035558 170 LQR--------------HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQ 209 (253)
Q Consensus 170 ~~~--------------~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 209 (253)
+.+ +-.....++++++| +++++-+.++.|++||+.+...
T Consensus 840 iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 840 LAGTGKAGFKDGKALKAQLSEPAGLALGENG-RLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EeccCCcCCCCCcccccccCCceEEEEeCCC-CEEEEECCCCEEEEEECCCCcc
Confidence 211 12356789999999 6888888999999999988653
No 286
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=6e-09 Score=85.76 Aligned_cols=186 Identities=14% Similarity=0.161 Sum_probs=125.4
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeee
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTI 121 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~ 121 (253)
..+.|++++ +.+|+-|+.+|.|++++... .. .+...|... . +|.++++|+.||+|.+-.+-+.+....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 467777776 78999999999999999863 33 333334433 5 899999999999999999888775443
Q ss_pred eeccCCCCCCeeEEEeeCC----CCCEEEEEEeCCCeEEEEECCCCCCCe-eeecccccceeEEEEecCCCCeEEEecCC
Q 035558 122 IYESSEPDTPLVRLGWNKQ----DPRYMATIIMDSAKVVVLDIRFPTLPV-VELQRHQASVNAIAWAPHSSCHICTAGDD 196 (253)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 196 (253)
.. ...++.+++++|+ ..+.+++||..| +.++.-+-.+... ..+..-.++|.++.|. | .++|-++.+
T Consensus 109 ~d----f~rpiksial~Pd~~~~~sk~fv~GG~ag--lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g-~lIAWand~ 179 (846)
T KOG2066|consen 109 YD----FKRPIKSIALHPDFSRQQSKQFVSGGMAG--LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--G-NLIAWANDD 179 (846)
T ss_pred Ee----cCCcceeEEeccchhhhhhhheeecCcce--EEEehhhhhcCccceeeecCccceEEEEec--C-cEEEEecCC
Confidence 32 2238899999994 256788887766 7777654433211 2355567899999998 4 478888766
Q ss_pred CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 197 SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 197 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
| |+|||+...+....... +............+.|.+..+ +..|...+|+|..
T Consensus 180 G-v~vyd~~~~~~l~~i~~-p~~~~R~e~fpphl~W~~~~~--LVIGW~d~v~i~~ 231 (846)
T KOG2066|consen 180 G-VKVYDTPTRQRLTNIPP-PSQSVRPELFPPHLHWQDEDR--LVIGWGDSVKICS 231 (846)
T ss_pred C-cEEEeccccceeeccCC-CCCCCCcccCCCceEecCCCe--EEEecCCeEEEEE
Confidence 5 89999998775431111 111112233345678888764 4455555666654
No 287
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=1.7e-09 Score=88.11 Aligned_cols=158 Identities=16% Similarity=0.274 Sum_probs=120.7
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---------------eeeeeecccccEEEEEec-CCCeEEEEeCCC
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---------------VDTQLIAHDKEVYDIAWG-GVGVFASVSADG 106 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------------~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg 106 (253)
....+++|+ .+..+++.|+.||.++|..+.+.. .-+++.+|...|.-+.|+ ..+.|-+...+|
T Consensus 15 vkL~c~~WN-ke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 15 VKLHCAEWN-KESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred ceEEEEEEc-ccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 568899999 899999999999999999886532 335677999999999999 888999999999
Q ss_pred cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCC
Q 035558 107 SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHS 186 (253)
Q Consensus 107 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 186 (253)
.|.+|-+-.+.-...+.. ....+.|.+++|+. +|..|...-.||. |.+=.+.....--+.+++ .....+.|++|.
T Consensus 94 lIiVWmlykgsW~EEMiN-nRnKSvV~SmsWn~-dG~kIcIvYeDGa-vIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMIN-NRNKSVVVSMSWNL-DGTKICIVYEDGA-VIVGSVDGNRIWGKELKG--QLLAHVLWSEDL 168 (1189)
T ss_pred eEEEEeeecccHHHHHhh-CcCccEEEEEEEcC-CCcEEEEEEccCC-EEEEeeccceecchhcch--heccceeecccH
Confidence 999999887753222222 23445899999999 8888888888887 766666543321222332 224478999998
Q ss_pred CCeEEEecCCCcEEEEeccCC
Q 035558 187 SCHICTAGDDSQALIWDLSSM 207 (253)
Q Consensus 187 ~~~l~~~~~dg~i~iwd~~~~ 207 (253)
..++.+-..|.+.+||.+..
T Consensus 169 -~~~Lf~~ange~hlydnqgn 188 (1189)
T KOG2041|consen 169 -EQALFKKANGETHLYDNQGN 188 (1189)
T ss_pred -HHHHhhhcCCcEEEeccccc
Confidence 57777888899999998754
No 288
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.08 E-value=1.5e-06 Score=65.21 Aligned_cols=211 Identities=8% Similarity=-0.009 Sum_probs=128.1
Q ss_pred CCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558 2 CQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT 79 (253)
Q Consensus 2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 79 (253)
|.++.++.+.- . .|..|+...+ ....+... ....+.+..++ ..++.+...+ +.++|..+++...
T Consensus 9 ~~~g~l~~~D~~~~~i~~~~~~~~-----~~~~~~~~-------~~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 9 PRDGRLYWVDIPGGRIYRVDPDTG-----EVEVIDLP-------GPNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTV 74 (246)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTT-----EEEEEESS-------SEEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEE
T ss_pred CCCCEEEEEEcCCCEEEEEECCCC-----eEEEEecC-------CCceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEE
Confidence 34677777765 3 8888888874 22222222 25577776344 4555555544 5666988886443
Q ss_pred eeec-----ccccEEEEEec-CCCeEEEEeCC--------CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEE
Q 035558 80 QLIA-----HDKEVYDIAWG-GVGVFASVSAD--------GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYM 145 (253)
Q Consensus 80 ~~~~-----~~~~v~~~~~~-~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 145 (253)
.... .....+++++. ++++.++.... |.|..++.. ++ ....... -...+.++|+| +++.|
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~---~~~pNGi~~s~-dg~~l 148 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADG---LGFPNGIAFSP-DGKTL 148 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEE---ESSEEEEEEET-TSSEE
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-EEEEecC---cccccceEECC-cchhe
Confidence 3332 34678899999 88877776644 456666666 33 2222221 12578899999 88877
Q ss_pred EEEEeCCCeEEEEECCCCCCCe---e---eecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCee
Q 035558 146 ATIIMDSAKVVVLDIRFPTLPV---V---ELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPIL 219 (253)
Q Consensus 146 ~~~~~~~~~i~~~d~~~~~~~~---~---~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 219 (253)
+++......|..+++......+ . .+....+..-.+++..+| ++.++....+.|.+++.. ++... .
T Consensus 149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~-G~~~~-------~ 219 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPD-GKLLR-------E 219 (246)
T ss_dssp EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SCEEE-------E
T ss_pred eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCC-ccEEE-------E
Confidence 7666555559999987543211 1 122222347889999999 577777778999999987 44222 2
Q ss_pred eccCCCceeEEEEc-CCCCceEE
Q 035558 220 AYTAGAEIEQLQWS-SSQPDWVA 241 (253)
Q Consensus 220 ~~~~~~~v~~~~~~-~~~~~~~~ 241 (253)
..-....+++++|. ++...|+.
T Consensus 220 i~~p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 220 IELPVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp EE-SSSSEEEEEEESTTSSEEEE
T ss_pred EcCCCCCEEEEEEECCCCCEEEE
Confidence 22224589999994 56554543
No 289
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.06 E-value=3.8e-07 Score=68.49 Aligned_cols=194 Identities=14% Similarity=0.089 Sum_probs=123.9
Q ss_pred EEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeecc
Q 035558 47 SFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYES 125 (253)
Q Consensus 47 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 125 (253)
+..|.+.++.++++-...+.|..|+..+++... +... . ...+++. .+..++.+...+ +.++|..+++........
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-~-~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-G-PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS-S-EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC-C-CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 567884478888887788999999998776433 2212 2 6677777 556666666655 555698887543333331
Q ss_pred -CC-CCCCeeEEEeeCCCCCEEEEEEeC--------CCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecC
Q 035558 126 -SE-PDTPLVRLGWNKQDPRYMATIIMD--------SAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGD 195 (253)
Q Consensus 126 -~~-~~~~i~~~~~~~~~~~~l~~~~~~--------~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 195 (253)
.. .....+.+++.| ++++.++.... +. |..++.. .+ +..+...-...+.++|+|++..++++-+.
T Consensus 80 ~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~-v~~~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGS-VYRIDPD-GK--VTVVADGLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp TTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEE-EEEEETT-SE--EEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred CCCcccCCCceEEEcC-CCCEEEEecCCCccccccccc-eEEECCC-Ce--EEEEecCcccccceEECCcchheeecccc
Confidence 12 344788999999 88866665433 33 6666766 22 34344345567899999999534457788
Q ss_pred CCcEEEEeccCCCCCCCCCCCCeee---ccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 196 DSQALIWDLSSMGQPVEGGLDPILA---YTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 196 dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
.+.|..|++....... ...... .......-.+++..+|..+++.-..+.|.+++
T Consensus 155 ~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~ 211 (246)
T PF08450_consen 155 NGRIWRFDLDADGGEL---SNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFD 211 (246)
T ss_dssp TTEEEEEEEETTTCCE---EEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred cceeEEEeccccccce---eeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence 8999999997544311 001111 11223578899999998777777788888775
No 290
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.06 E-value=1.4e-07 Score=82.68 Aligned_cols=198 Identities=15% Similarity=0.240 Sum_probs=123.4
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEecc----C-------------------ceeeeeeec----------------
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE----R-------------------EAVDTQLIA---------------- 83 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~----~-------------------~~~~~~~~~---------------- 83 (253)
..|.+++|| |++..|+..+.++++.+.... . |+....|+|
T Consensus 121 ~GI~a~~WS-PD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 121 SGILAASWS-PDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred CcEEEEEEC-CCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 679999999 899999999989988775421 0 010111110
Q ss_pred --------ccccEEEEEec-CCCeEEEEeC---C---CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558 84 --------HDKEVYDIAWG-GVGVFASVSA---D---GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI 148 (253)
Q Consensus 84 --------~~~~v~~~~~~-~~~~l~~~~~---d---g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 148 (253)
....-..++|. ||.+||+.+. . ..+++|+-+ +. .........+--..++|.| .|++||+.
T Consensus 200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~---L~stSE~v~gLe~~l~WrP-sG~lIA~~ 274 (928)
T PF04762_consen 200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GE---LQSTSEPVDGLEGALSWRP-SGNLIASS 274 (928)
T ss_pred ccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ce---EEeccccCCCccCCccCCC-CCCEEEEE
Confidence 12234567898 9999998874 3 479999876 32 2222222223345689999 99999988
Q ss_pred EeCC--CeEEEEECCCCCCCeeeec--ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCC
Q 035558 149 IMDS--AKVVVLDIRFPTLPVVELQ--RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAG 224 (253)
Q Consensus 149 ~~~~--~~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 224 (253)
.... ..|.+|.-...+.-...++ .....|..++|++++ ..|+..-.|. |.+|-..+..--. +-...+...
T Consensus 275 q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWYL----Kqei~~~~~ 348 (928)
T PF04762_consen 275 QRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWYL----KQEIRFSSS 348 (928)
T ss_pred EEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEEE----EEEEEccCC
Confidence 7622 2377776543321122222 345679999999999 5888876555 9999888865222 001222334
Q ss_pred CceeEEEEcCCCCceE-EEEcCCcEEEEE
Q 035558 225 AEIEQLQWSSSQPDWV-AIAFSTKLQILR 252 (253)
Q Consensus 225 ~~v~~~~~~~~~~~~~-~~~~~~~i~vw~ 252 (253)
..+..+.|+|..+.-+ ....++.+..++
T Consensus 349 ~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 349 ESVNFVKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred CCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence 4455699999876544 444446665543
No 291
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=8.6e-10 Score=82.29 Aligned_cols=165 Identities=15% Similarity=0.223 Sum_probs=113.4
Q ss_pred EEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCC-----CeeeeeccCCCCCCe
Q 035558 59 GTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKE-----HSTIIYESSEPDTPL 132 (253)
Q Consensus 59 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~~~i 132 (253)
++.+.+..|-+-|++++- .+.+. ..+.|.++.|. .++++..|+..|.|..+|++... +...+ .|.+.|
T Consensus 228 fs~G~sqqv~L~nvetg~-~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl----yh~Ssv 301 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGH-QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL----YHDSSV 301 (425)
T ss_pred ecccccceeEEEEeeccc-ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE----EcCcch
Confidence 444556678888988764 23343 56789999999 89999999999999999999762 11222 345578
Q ss_pred eEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC--CeeeecccccceeEE--EEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558 133 VRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL--PVVELQRHQASVNAI--AWAPHSSCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~i~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
+++..-..++.+|++.+.+|. |++||+|..+. .+.++.+|...-.-+ ...+.. ..+++++.|...|||.++.+.
T Consensus 302 tslq~Lq~s~q~LmaS~M~gk-ikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGK-IKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred hhhhhhccccceEeeccCcCc-eeEeeehhhhcccceeeeeccccccccccccccccc-ceEEEccCeeEEEEEecccCc
Confidence 887765547789999999999 99999997542 266667665432222 234444 488899999999999999876
Q ss_pred CCCCCCCCCeeeccCCCceeEEEEcC
Q 035558 209 QPVEGGLDPILAYTAGAEIEQLQWSS 234 (253)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~v~~~~~~~ 234 (253)
... +.|.........+.+++|..
T Consensus 380 Ll~---tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 380 LLC---TIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred eee---ccCCCCccccccccceehhc
Confidence 433 11112222334566666643
No 292
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.04 E-value=1.6e-06 Score=65.34 Aligned_cols=218 Identities=11% Similarity=0.061 Sum_probs=135.1
Q ss_pred CCCCCceEEeecC---cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe-----CCCeEEEEec
Q 035558 1 ECQKPDLLATSSD---FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS-----IDTTCTIWDI 72 (253)
Q Consensus 1 sp~~~~~l~~~~~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~i~vwd~ 72 (253)
+|..+..++.+-. ...+||..++ +....+.......|.+ .-.|+ +++++|++.- ..|.|-|||.
T Consensus 13 ~p~~~~avafaRRPG~~~~v~D~~~g----~~~~~~~a~~gRHFyG---Hg~fs-~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 13 HPTRPEAVAFARRPGTFALVFDCRTG----QLLQRLWAPPGRHFYG---HGVFS-PDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred CCCCCeEEEEEeCCCcEEEEEEcCCC----ceeeEEcCCCCCEEec---CEEEc-CCCCEEEEeccccCCCcEEEEEEEC
Confidence 3667778888875 8999999987 5555554443222211 35688 8999998863 3578999999
Q ss_pred c-CceeeeeeecccccEEEEEec-CCCeEEEEe------------------CCCcEEEEEcCCCCCeeeeec-cCCCCCC
Q 035558 73 E-REAVDTQLIAHDKEVYDIAWG-GVGVFASVS------------------ADGSVRVFDLRDKEHSTIIYE-SSEPDTP 131 (253)
Q Consensus 73 ~-~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~~~~-~~~~~~~ 131 (253)
. +.+.+..+..|.-....+.+. +++.|+.+- .+-.+...|.++++....... ...+...
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 8 566778888777677788888 887776652 122344445555543322211 1335558
Q ss_pred eeEEEeeCCCCCEEEEEEeCCC------eEEEEECCCCCC----CeeeecccccceeEEEEecCCCCeEEEecCCCcEEE
Q 035558 132 LVRLGWNKQDPRYMATIIMDSA------KVVVLDIRFPTL----PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALI 201 (253)
Q Consensus 132 i~~~~~~~~~~~~l~~~~~~~~------~i~~~d~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i 201 (253)
|..+++.+ ++..+...-..+- .+-+++....-. +......-...+-+|++++++....+|+=..+.+.+
T Consensus 165 iRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 165 IRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred eeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 99999998 6665555443331 133333322100 011112234679999999998534455558899999
Q ss_pred EeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC
Q 035558 202 WDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ 236 (253)
Q Consensus 202 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 236 (253)
||..++... ....-..+..++-.+++
T Consensus 244 ~d~~tg~~~---------~~~~l~D~cGva~~~~~ 269 (305)
T PF07433_consen 244 WDAATGRLL---------GSVPLPDACGVAPTDDG 269 (305)
T ss_pred EECCCCCEe---------eccccCceeeeeecCCc
Confidence 999988732 22234456677777665
No 293
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=9.8e-07 Score=71.14 Aligned_cols=179 Identities=8% Similarity=-0.010 Sum_probs=106.2
Q ss_pred CeeEEEecCCCCCE-EEEEeC---CCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEE-EeCC--CcEEEEEcCC
Q 035558 44 PLTSFDWNEAEPRR-IGTSSI---DTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFAS-VSAD--GSVRVFDLRD 115 (253)
Q Consensus 44 ~v~~~~~~~~~~~~-l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~-~~~d--g~i~i~d~~~ 115 (253)
....-.|+ |+++. ++..+. +..|+++|+.+++...... ..+......|+ +++.++. .+.+ ..|.++|+.+
T Consensus 189 ~~~~p~wS-pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWA-NKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEEC-CCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 45678999 78874 554333 3579999998876544332 44556677899 8876654 3333 4577788877
Q ss_pred CCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC-C-eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEe
Q 035558 116 KEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS-A-KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTA 193 (253)
Q Consensus 116 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-~-~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 193 (253)
++. ..+..... ......|+| +++.|+..+..+ . .|.++|+.++.. ..+...... ...|+|+|. .|+..
T Consensus 267 g~~-~~LT~~~~---~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rlt~~g~~--~~~~SPDG~-~Ia~~ 336 (419)
T PRK04043 267 KTL-TQITNYPG---IDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSV--EQVVFHGKN--NSSVSTYKN-YIVYS 336 (419)
T ss_pred CcE-EEcccCCC---ccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCe--EeCccCCCc--CceECCCCC-EEEEE
Confidence 652 22322221 233457999 887777666432 2 478888876542 222211111 248999995 55544
Q ss_pred c-CC--------CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEE
Q 035558 194 G-DD--------SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA 243 (253)
Q Consensus 194 ~-~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 243 (253)
+ .. ..|.+.|+.++... .+... .......|+|+|+.++-..
T Consensus 337 ~~~~~~~~~~~~~~I~v~d~~~g~~~--------~LT~~-~~~~~p~~SPDG~~I~f~~ 386 (419)
T PRK04043 337 SRETNNEFGKNTFNLYLISTNSDYIR--------RLTAN-GVNQFPRFSSDGGSIMFIK 386 (419)
T ss_pred EcCCCcccCCCCcEEEEEECCCCCeE--------ECCCC-CCcCCeEECCCCCEEEEEE
Confidence 4 32 36777887766422 12211 2233578999998766433
No 294
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=2.2e-09 Score=80.17 Aligned_cols=160 Identities=8% Similarity=0.117 Sum_probs=110.6
Q ss_pred EEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-----eeeeee
Q 035558 8 LATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-----AVDTQL 81 (253)
Q Consensus 8 l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----~~~~~~ 81 (253)
+++|.+ .|-+-++.++ ..+.+. -+ +.|.++.|. ..+++++.|..+|.|..+|++.. .+.+.+
T Consensus 228 fs~G~sqqv~L~nvetg-----~~qsf~-sk-----sDVfAlQf~-~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl 295 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETG-----HQQSFQ-SK-----SDVFALQFA-GSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL 295 (425)
T ss_pred ecccccceeEEEEeecc-----cccccc-cc-----hhHHHHHhc-ccCCeeEecccCCcEEEEEeeecccCCCcceEEE
Confidence 445555 7777777773 344444 33 679999998 78999999999999999999865 233444
Q ss_pred ecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCee--EEEeeCCCCCEEEEEEeCCCeEEE
Q 035558 82 IAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLV--RLGWNKQDPRYMATIIMDSAKVVV 157 (253)
Q Consensus 82 ~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~l~~~~~~~~~i~~ 157 (253)
-|...|+++... ++.+|++.+.+|+|++||++.-++..-+....+|...-. -+..++ ....+++++.|.. .++
T Consensus 296 -yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcy-tRi 372 (425)
T KOG2695|consen 296 -YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCY-TRI 372 (425)
T ss_pred -EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCeeE-EEE
Confidence 389999999887 788999999999999999998776444444444432222 233455 5566777777766 999
Q ss_pred EECCCCCCCeeeecc----cccceeEEEEe
Q 035558 158 LDIRFPTLPVVELQR----HQASVNAIAWA 183 (253)
Q Consensus 158 ~d~~~~~~~~~~~~~----~~~~i~~~~~~ 183 (253)
|.++.+.. +.+++. -+..+.+++|.
T Consensus 373 Wsl~~ghL-l~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 373 WSLDSGHL-LCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred EecccCce-eeccCCCCccccccccceehh
Confidence 99998663 444332 12234555554
No 295
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.98 E-value=2e-07 Score=73.27 Aligned_cols=223 Identities=10% Similarity=0.165 Sum_probs=142.3
Q ss_pred CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCe---------------
Q 035558 3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTT--------------- 66 (253)
Q Consensus 3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--------------- 66 (253)
+.|.+|++... .|.+|.-... ..+..+. | ..|..+.|+ |++.+|.+-+..+.
T Consensus 42 P~G~~l~~~~~~~V~~~~g~~~----~~l~~~~-~------~~V~~~~fS-P~~kYL~tw~~~pi~~pe~e~sp~~~~n~ 109 (561)
T COG5354 42 PLGTYLFSEHAAGVECWGGPSK----AKLVRFR-H------PDVKYLDFS-PNEKYLVTWSREPIIEPEIEISPFTSKNN 109 (561)
T ss_pred CcchheehhhccceEEccccch----hheeeee-c------CCceecccC-cccceeeeeccCCccChhhccCCccccCc
Confidence 45777777776 9999998775 4333433 3 358899999 89999998765443
Q ss_pred EEEEeccCceeeeeeeccccc--EE-EEEec-CCCeEEEEeCCCcEEEEEcCCCCCe-eeeeccCCCCCCeeEEEeeCC-
Q 035558 67 CTIWDIEREAVDTQLIAHDKE--VY-DIAWG-GVGVFASVSADGSVRVFDLRDKEHS-TIIYESSEPDTPLVRLGWNKQ- 140 (253)
Q Consensus 67 i~vwd~~~~~~~~~~~~~~~~--v~-~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~i~~~~~~~~- 140 (253)
+.+||..++..+..+.....+ .+ -+.|+ ++.++|-. ....++++++ +.... ..... .....+....|+|.
T Consensus 110 ~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~--lr~~gi~dFsisP~~ 185 (561)
T COG5354 110 VFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKN--LRPVGILDFSISPEG 185 (561)
T ss_pred eeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhh--ccccceeeEEecCCC
Confidence 899999999998888765555 55 67888 77777655 3446999998 43311 11111 11237888899984
Q ss_pred CCCEEEEE-----EeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEec-----------CCCcEEEEec
Q 035558 141 DPRYMATI-----IMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAG-----------DDSQALIWDL 204 (253)
Q Consensus 141 ~~~~l~~~-----~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-----------~dg~i~iwd~ 204 (253)
+...|+.- +.... +++|.+..... +.+..--...=..+.|++.|. +|+.-- ....++++++
T Consensus 186 n~~~la~~tPEk~~kpa~-~~i~sIp~~s~-l~tk~lfk~~~~qLkW~~~g~-~ll~l~~t~~ksnKsyfgesnLyl~~~ 262 (561)
T COG5354 186 NHDELAYWTPEKLNKPAM-VRILSIPKNSV-LVTKNLFKVSGVQLKWQVLGK-YLLVLVMTHTKSNKSYFGESNLYLLRI 262 (561)
T ss_pred CCceEEEEccccCCCCcE-EEEEEccCCCe-eeeeeeEeecccEEEEecCCc-eEEEEEEEeeecccceeccceEEEEee
Confidence 33344432 23444 88888875442 322222222335688999884 443221 1356788888
Q ss_pred cCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEE--cCCcEEEEE
Q 035558 205 SSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA--FSTKLQILR 252 (253)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~i~vw~ 252 (253)
+....+. . ....++|...+|.|.++.+..++ ....+.+++
T Consensus 263 ~e~~i~V-------~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~ 304 (561)
T COG5354 263 TERSIPV-------E-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD 304 (561)
T ss_pred cccccce-------e-ccccccceeeeecccCCceeEEecccccceeecc
Confidence 8555432 2 25688999999999998877544 344444443
No 296
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2.4e-08 Score=77.23 Aligned_cols=203 Identities=17% Similarity=0.139 Sum_probs=143.8
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccC---ceeeeeeecccccEEEEEec-CCCeEEEEeC-CCcEEEEEcCCCC
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER---EAVDTQLIAHDKEVYDIAWG-GVGVFASVSA-DGSVRVFDLRDKE 117 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~~ 117 (253)
+.|+.+.. ...+++.+++.||.++.|.-.. -+.+..+..|-..|.+++.+ ++.++.+.+. |..++++|+.+-.
T Consensus 10 d~i~hv~~--tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D 87 (558)
T KOG0882|consen 10 DVITHVFP--TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD 87 (558)
T ss_pred ceeeeEee--ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence 56666553 4678999999999999998654 23555667889999999999 9999999887 9999999998766
Q ss_pred CeeeeeccCCCCCCeeEEEeeCCCC---CEEEEEEeCCCeEEEEECCCCC-CCeeeecccccceeEEEEecCCCCeEEEe
Q 035558 118 HSTIIYESSEPDTPLVRLGWNKQDP---RYMATIIMDSAKVVVLDIRFPT-LPVVELQRHQASVNAIAWAPHSSCHICTA 193 (253)
Q Consensus 118 ~~~~~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 193 (253)
....+....- . ..+.|....+ ..++++..+.+.+.++|-+... +......-|..+|..+.++|-++ .+++.
T Consensus 88 minmiKL~~l-P---g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s~vSi 162 (558)
T KOG0882|consen 88 MINMIKLVDL-P---GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-SAVSI 162 (558)
T ss_pred hhhhcccccC-C---CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc-ceeec
Confidence 4322222111 1 1223322122 2566666666569999987655 33455566999999999999994 88888
Q ss_pred cCCCcEEEEeccC-CCCCCC-------CCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 194 GDDSQALIWDLSS-MGQPVE-------GGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 194 ~~dg~i~iwd~~~-~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
...|.|.-|.... .+.|.. ................++.|+|++..+...+.|..|+++.
T Consensus 163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~ 229 (558)
T KOG0882|consen 163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFV 229 (558)
T ss_pred cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEE
Confidence 8999999998874 222210 0011122233466788999999999888888999999875
No 297
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.95 E-value=2.5e-09 Score=55.57 Aligned_cols=37 Identities=30% Similarity=0.691 Sum_probs=34.6
Q ss_pred CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEe
Q 035558 166 PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWD 203 (253)
Q Consensus 166 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd 203 (253)
++..+.+|...|++++|+|++ .+|++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 477899999999999999998 6999999999999997
No 298
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=3.7e-07 Score=72.69 Aligned_cols=219 Identities=12% Similarity=0.202 Sum_probs=128.3
Q ss_pred CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC-----CeEEEEeccCcee
Q 035558 4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID-----TTCTIWDIEREAV 77 (253)
Q Consensus 4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~ 77 (253)
|+.++|.-.. +|.||+...- .++..-.-.- ..|....|+ |.++.||--... ..+.+-.+-+++.
T Consensus 316 DdKy~Arm~~~sisIyEtpsf----~lld~Kslki-----~gIr~Fsws-P~~~llAYwtpe~~~~parvtL~evPs~~~ 385 (698)
T KOG2314|consen 316 DDKYFARMTGNSISIYETPSF----MLLDKKSLKI-----SGIRDFSWS-PTSNLLAYWTPETNNIPARVTLMEVPSKRE 385 (698)
T ss_pred CCceeEEeccceEEEEecCce----eeecccccCC-----ccccCcccC-CCcceEEEEcccccCCcceEEEEecCccce
Confidence 5566776654 8888887652 2221111111 568899999 677777644321 1344555555555
Q ss_pred eeeeecccccEEEEEec-CCCeEEEE----------eCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEE
Q 035558 78 DTQLIAHDKEVYDIAWG-GVGVFASV----------SADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMA 146 (253)
Q Consensus 78 ~~~~~~~~~~v~~~~~~-~~~~l~~~----------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 146 (253)
+++-+-+.-.=..|-|- +|.+|+.- +.--.+.|+.++....+...... ...|...+|-| .|+.++
T Consensus 386 iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel---ke~vi~FaWEP-~gdkF~ 461 (698)
T KOG2314|consen 386 IRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL---KESVIAFAWEP-HGDKFA 461 (698)
T ss_pred eeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec---chheeeeeecc-CCCeEE
Confidence 54443332222334455 67766542 11123667777766533222222 23788999999 676665
Q ss_pred EEEeC--CCeEEEEECCC-CCCC--eeeecccccceeEEEEecCCCCeEEEec---CCCcEEEEeccCCCCCCCCCCCCe
Q 035558 147 TIIMD--SAKVVVLDIRF-PTLP--VVELQRHQASVNAIAWAPHSSCHICTAG---DDSQALIWDLSSMGQPVEGGLDPI 218 (253)
Q Consensus 147 ~~~~~--~~~i~~~d~~~-~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~ 218 (253)
+-+.. ..++.+|-..+ ...+ +..+. ....+.+.|+|.| ++++.+. ..|.+.++|+.......
T Consensus 462 vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG-~fvvva~l~s~~g~l~F~D~~~a~~k~------- 531 (698)
T KOG2314|consen 462 VISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKG-RFVVVAALVSRRGDLEFYDTDYADLKD------- 531 (698)
T ss_pred EEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCC-cEEEEEEecccccceEEEecchhhhhh-------
Confidence 54432 23489998874 2222 33333 3567899999999 6776654 57999999998533221
Q ss_pred eeccCCCceeEEEEcCCCCceEEEEcCC
Q 035558 219 LAYTAGAEIEQLQWSSSQPDWVAIAFST 246 (253)
Q Consensus 219 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 246 (253)
.........+.+.|.|.|++++++++..
T Consensus 532 ~~~~eh~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 532 TASPEHFAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred ccCccccccccceECCCCCEEEEeeehh
Confidence 1222234567889999999988776543
No 299
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=3.9e-07 Score=72.45 Aligned_cols=149 Identities=20% Similarity=0.363 Sum_probs=102.8
Q ss_pred EEEecCCCCCEEEEEe--CC---------CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEE--EeCCCcEEEEE
Q 035558 47 SFDWNEAEPRRIGTSS--ID---------TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFAS--VSADGSVRVFD 112 (253)
Q Consensus 47 ~~~~~~~~~~~l~~~~--~d---------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~--~~~dg~i~i~d 112 (253)
.+.|++....+|+.++ -| .++++.+++.....-.+. ..++|.++.|+ +++.|++ |-.=.++.+||
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifn 300 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFN 300 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEc
Confidence 5778843333443332 22 367787877444443343 47899999999 8776554 45677899999
Q ss_pred cCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC--CeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeE
Q 035558 113 LRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS--AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHI 190 (253)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 190 (253)
++..- +.. -.+++=+++-|+| .+++++.+|.++ +.+-+||..+.+ .+..+..-. -+-..|+|+| .++
T Consensus 301 lr~~~----v~d--f~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K-~i~~~~a~~--tt~~eW~PdG-e~f 369 (566)
T KOG2315|consen 301 LRGKP----VFD--FPEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRK-LIAKFKAAN--TTVFEWSPDG-EYF 369 (566)
T ss_pred CCCCE----eEe--CCCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchh-hccccccCC--ceEEEEcCCC-cEE
Confidence 98653 332 2234667899999 999999888754 239999999844 466666433 3557999999 588
Q ss_pred EEecC------CCcEEEEeccCC
Q 035558 191 CTAGD------DSQALIWDLSSM 207 (253)
Q Consensus 191 ~~~~~------dg~i~iwd~~~~ 207 (253)
+|+.. |+.++||+....
T Consensus 370 lTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 370 LTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred EEEeccccEEecCCeEEEEecCc
Confidence 87764 799999998653
No 300
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=1.4e-06 Score=70.20 Aligned_cols=171 Identities=8% Similarity=0.048 Sum_probs=100.4
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEE-EeCC--CeEEEEeccCceeeeeeecccccEEE
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGT-SSID--TTCTIWDIEREAVDTQLIAHDKEVYD 90 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~ 90 (253)
.|.++|+.++ +...... .. +......|+ |+++.++. .+.+ ..|.++|+.+++... +..+......
T Consensus 214 ~Iyv~dl~tg----~~~~lt~-~~-----g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~~d~~ 281 (419)
T PRK04043 214 TLYKYNLYTG----KKEKIAS-SQ-----GMLVVSDVS-KDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPGIDVN 281 (419)
T ss_pred EEEEEECCCC----cEEEEec-CC-----CcEEeeEEC-CCCCEEEEEEccCCCcEEEEEECCCCcEEE-cccCCCccCc
Confidence 7889998775 3332222 22 445567899 78876654 3333 468888887776433 3333333345
Q ss_pred EEec-CCCeEEEEeC-CC--cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC--------CeEEEE
Q 035558 91 IAWG-GVGVFASVSA-DG--SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS--------AKVVVL 158 (253)
Q Consensus 91 ~~~~-~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~--------~~i~~~ 158 (253)
..|+ +++.|+..+. .+ .|.+.|+.+++..+.... +. ....|+| +++.++...... ..|.+.
T Consensus 282 p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~----~~~~~SP-DG~~Ia~~~~~~~~~~~~~~~~I~v~ 354 (419)
T PRK04043 282 GNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK----NNSSVST-YKNYIVYSSRETNNEFGKNTFNLYLI 354 (419)
T ss_pred cEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CC----cCceECC-CCCEEEEEEcCCCcccCCCCcEEEEE
Confidence 5799 8887776653 33 577778877664333221 11 1248999 888877766542 248888
Q ss_pred ECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCc--EEEEeccC
Q 035558 159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQ--ALIWDLSS 206 (253)
Q Consensus 159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~ 206 (253)
|+.++. ...+... .......|+|||..++++....+. +.+.++..
T Consensus 355 d~~~g~--~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 355 STNSDY--IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred ECCCCC--eEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 987654 3444332 233458899999533344433333 45555544
No 301
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.93 E-value=9.8e-10 Score=88.28 Aligned_cols=217 Identities=18% Similarity=0.307 Sum_probs=137.7
Q ss_pred eEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe----CCCeEEEEeccCc--eee
Q 035558 7 LLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS----IDTTCTIWDIERE--AVD 78 (253)
Q Consensus 7 ~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~--~~~ 78 (253)
+++.|.. .|-+-.+..... .-.....+|. .+.++++|++-+.+.||+|- .|..+.|||+.++ .+.
T Consensus 72 IlavG~atG~I~l~s~r~~hd--Ss~E~tp~~a-----r~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPk 144 (783)
T KOG1008|consen 72 ILAVGSATGNISLLSVRHPHD--SSAEVTPGYA-----RPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPK 144 (783)
T ss_pred hhhhccccCceEEeecCCccc--ccceeccccc-----ccccccccccccHHHHHhhhhhhcccCCccceecccccCCCc
Confidence 4555553 666666655311 1223344455 78999999977788888873 3567999999876 222
Q ss_pred e--eeec-ccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCe
Q 035558 79 T--QLIA-HDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAK 154 (253)
Q Consensus 79 ~--~~~~-~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~ 154 (253)
. .+.+ ......+++|. +..++++|.....+.++|++........ -....+..+...|..++++++.. ++.
T Consensus 145 e~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s----vnTk~vqG~tVdp~~~nY~cs~~-dg~- 218 (783)
T KOG1008|consen 145 ESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS----VNTKYVQGITVDPFSPNYFCSNS-DGD- 218 (783)
T ss_pred cccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh----hhhhhcccceecCCCCCceeccc-cCc-
Confidence 1 2222 23455688999 8999999999999999999954311111 11114555677777778887765 776
Q ss_pred EEEEE-CCCCCCCeeeeccccc----ceeEEEEecCCCCeEEEecC-CCcEEEEeccCCCCCCC---------CCCCCee
Q 035558 155 VVVLD-IRFPTLPVVELQRHQA----SVNAIAWAPHSSCHICTAGD-DSQALIWDLSSMGQPVE---------GGLDPIL 219 (253)
Q Consensus 155 i~~~d-~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~---------~~~~~~~ 219 (253)
|.+|| .++.+.++..+...+. .+..++|+|...-++++... .++|+.+|+..-..+.- ....+..
T Consensus 219 iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q 298 (783)
T KOG1008|consen 219 IAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQ 298 (783)
T ss_pred eeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeeeccccccc
Confidence 99999 6666666555554333 38999999976557777775 58999999875432210 0001111
Q ss_pred eccCCCceeEEEEcCCC
Q 035558 220 AYTAGAEIEQLQWSSSQ 236 (253)
Q Consensus 220 ~~~~~~~v~~~~~~~~~ 236 (253)
..+.-+.|....||+..
T Consensus 299 ~~~~~s~I~~f~wH~~s 315 (783)
T KOG1008|consen 299 PNSQCSGIDFFTWHTAS 315 (783)
T ss_pred ccccccceeecCcCcCC
Confidence 11223567788888765
No 302
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.92 E-value=6.8e-09 Score=53.91 Aligned_cols=38 Identities=21% Similarity=0.525 Sum_probs=35.5
Q ss_pred ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEe
Q 035558 28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWD 71 (253)
Q Consensus 28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 71 (253)
+++.++++|. .+|++++|+ +++++|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~-----~~i~~i~~~-~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHS-----SSINSIAWS-PDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSS-----SSEEEEEEE-TTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCC-----CcEEEEEEe-cccccceeeCCCCEEEEEC
Confidence 5678899999 899999999 8899999999999999997
No 303
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=1.6e-09 Score=90.31 Aligned_cols=161 Identities=11% Similarity=0.128 Sum_probs=115.3
Q ss_pred cceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCC
Q 035558 27 VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSAD 105 (253)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d 105 (253)
++..+.++.|. ...+|++|+ ...++|+.|+..|.|+++++.+|.......+|..+|+-+.=+ ++..+++.+.-
T Consensus 1091 Fr~w~~frd~~-----~~fTc~afs-~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~ 1164 (1516)
T KOG1832|consen 1091 FRSWRSFRDET-----ALFTCIAFS-GGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSS 1164 (1516)
T ss_pred cccchhhhccc-----cceeeEEee-cCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccc
Confidence 45566777777 889999999 889999999999999999999999999999999999999999 88877765543
Q ss_pred C--cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeee-ec---ccccceeE
Q 035558 106 G--SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE-LQ---RHQASVNA 179 (253)
Q Consensus 106 g--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~-~~---~~~~~i~~ 179 (253)
. ...+|++..... .... -..-.++.|+. ....-+.|..... ..+||+.+... +.+ +. +....-+.
T Consensus 1165 S~PlsaLW~~~s~~~--~~Hs----f~ed~~vkFsn-~~q~r~~gt~~d~-a~~YDvqT~~~-l~tylt~~~~~~y~~n~ 1235 (1516)
T KOG1832|consen 1165 SSPLSALWDASSTGG--PRHS----FDEDKAVKFSN-SLQFRALGTEADD-ALLYDVQTCSP-LQTYLTDTVTSSYSNNL 1235 (1516)
T ss_pred cCchHHHhccccccC--cccc----ccccceeehhh-hHHHHHhcccccc-eEEEecccCcH-HHHhcCcchhhhhhccc
Confidence 3 477898876321 1111 11455788886 3333344444444 99999998764 333 22 12223477
Q ss_pred EEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558 180 IAWAPHSSCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 180 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
..|+|+. .+++ .|| .+||++..+
T Consensus 1236 a~FsP~D-~LIl---ndG--vLWDvR~~~ 1258 (1516)
T KOG1832|consen 1236 AHFSPCD-TLIL---NDG--VLWDVRIPE 1258 (1516)
T ss_pred cccCCCc-ceEe---eCc--eeeeeccHH
Confidence 8999987 4554 355 479998865
No 304
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.89 E-value=1.3e-06 Score=69.88 Aligned_cols=218 Identities=13% Similarity=-0.015 Sum_probs=122.3
Q ss_pred CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec
Q 035558 5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA 83 (253)
Q Consensus 5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 83 (253)
+.+++...+ .|..||..++ +.+...+............+.... +..++.+..+|.+..+|.++++.+.....
T Consensus 146 ~~v~v~~~~g~l~a~d~~tG----~~~W~~~~~~~~~~~~~~~sp~~~---~~~v~~~~~~g~v~ald~~tG~~~W~~~~ 218 (377)
T TIGR03300 146 GLVVVRTNDGRLTALDAATG----ERLWTYSRVTPALTLRGSASPVIA---DGGVLVGFAGGKLVALDLQTGQPLWEQRV 218 (377)
T ss_pred CEEEEECCCCeEEEEEcCCC----ceeeEEccCCCceeecCCCCCEEE---CCEEEEECCCCEEEEEEccCCCEeeeecc
Confidence 444554455 8888888776 444444332200000000011111 24677888889999999999886654321
Q ss_pred cc----cc---EE----EEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC
Q 035558 84 HD----KE---VY----DIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS 152 (253)
Q Consensus 84 ~~----~~---v~----~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 152 (253)
.. .. .. ...+ .+..++.++.+|.+..+|.++++.. ...... ....... .+..+++++.++
T Consensus 219 ~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~---W~~~~~--~~~~p~~---~~~~vyv~~~~G 289 (377)
T TIGR03300 219 ALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVL---WKRDAS--SYQGPAV---DDNRLYVTDADG 289 (377)
T ss_pred ccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEE---EeeccC--CccCceE---eCCEEEEECCCC
Confidence 10 00 00 0111 3567888888999999999988632 221111 1112222 456777777788
Q ss_pred CeEEEEECCCCCCCeeeeccc-ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCce-eEE
Q 035558 153 AKVVVLDIRFPTLPVVELQRH-QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEI-EQL 230 (253)
Q Consensus 153 ~~i~~~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v-~~~ 230 (253)
. +..+|..+++. +...... .....+... .+ ..+++++.+|.+.++|..+++... ....+...+ .+.
T Consensus 290 ~-l~~~d~~tG~~-~W~~~~~~~~~~ssp~i--~g-~~l~~~~~~G~l~~~d~~tG~~~~-------~~~~~~~~~~~sp 357 (377)
T TIGR03300 290 V-VVALDRRSGSE-LWKNDELKYRQLTAPAV--VG-GYLVVGDFEGYLHWLSREDGSFVA-------RLKTDGSGIASPP 357 (377)
T ss_pred e-EEEEECCCCcE-EEccccccCCccccCEE--EC-CEEEEEeCCCEEEEEECCCCCEEE-------EEEcCCCccccCC
Confidence 7 99999987653 3333111 111222222 24 378899999999999998876432 222233222 222
Q ss_pred EEcCCCCceEEEEcCCcEEEEE
Q 035558 231 QWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 231 ~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
++. ++ .++.++.||.|..|+
T Consensus 358 ~~~-~~-~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 358 VVV-GD-GLLVQTRDGDLYAFR 377 (377)
T ss_pred EEE-CC-EEEEEeCCceEEEeC
Confidence 333 33 488899999887763
No 305
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.86 E-value=6.5e-07 Score=78.59 Aligned_cols=204 Identities=16% Similarity=0.273 Sum_probs=133.3
Q ss_pred CeeEEEecCCCCCEEEEEeC---C---CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeC---CCcEEEEEc
Q 035558 44 PLTSFDWNEAEPRRIGTSSI---D---TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSA---DGSVRVFDL 113 (253)
Q Consensus 44 ~v~~~~~~~~~~~~l~~~~~---d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~---dg~i~i~d~ 113 (253)
.-..++|- .||.++|+.+. . ..++||+.+ |+...+-..-.+--.+++|. .|+++|+... ...|.+|.-
T Consensus 211 ~~~~ISWR-GDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr 288 (928)
T PF04762_consen 211 GRVRISWR-GDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER 288 (928)
T ss_pred CceEEEEC-CCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec
Confidence 44578998 99999998764 2 579999987 55443333223334568999 9999988765 345666665
Q ss_pred CCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCe-eeecc-cccceeEEEEecCCCCeEE
Q 035558 114 RDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPV-VELQR-HQASVNAIAWAPHSSCHIC 191 (253)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~~l~ 191 (253)
+..+.-............|..++|++ ++..||+.-.+ . |.+|-..+..--+ +.+.. ....+..+.|+|..+..|.
T Consensus 289 NGLrhgeF~l~~~~~~~~v~~l~Wn~-ds~iLAv~~~~-~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~ 365 (928)
T PF04762_consen 289 NGLRHGEFTLRFDPEEEKVIELAWNS-DSEILAVWLED-R-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLH 365 (928)
T ss_pred CCcEeeeEecCCCCCCceeeEEEECC-CCCEEEEEecC-C-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEE
Confidence 54433222222223445899999999 99999986644 4 9999987754212 22221 2234555999998887788
Q ss_pred EecCCCcEEEEecc----CCCC--C------------------C--CCCCCCe--eeccCCCceeEEEEcCCCCceEEEE
Q 035558 192 TAGDDSQALIWDLS----SMGQ--P------------------V--EGGLDPI--LAYTAGAEIEQLQWSSSQPDWVAIA 243 (253)
Q Consensus 192 ~~~~dg~i~iwd~~----~~~~--~------------------~--~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~ 243 (253)
....+|.+..++.. .... + . ...++|. .......+|..++|++++..+++..
T Consensus 366 v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~ 445 (928)
T PF04762_consen 366 VLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLT 445 (928)
T ss_pred EEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEE
Confidence 88877877665542 2110 0 0 0001121 2223478899999999988788999
Q ss_pred cCCcEEEEE
Q 035558 244 FSTKLQILR 252 (253)
Q Consensus 244 ~~~~i~vw~ 252 (253)
.|+.+.+|.
T Consensus 446 ~d~~l~~~~ 454 (928)
T PF04762_consen 446 SDGSLSIYE 454 (928)
T ss_pred CCCCEEEEE
Confidence 999999886
No 306
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=1e-06 Score=73.07 Aligned_cols=173 Identities=13% Similarity=0.104 Sum_probs=116.1
Q ss_pred CceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558 5 PDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI 82 (253)
Q Consensus 5 ~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 82 (253)
+..++-|.- .|++.+.+.. . .+...|. .. . .+|.++++|+.||+|.|-.+-+.+....+.
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~-----~-~~~~~~s-----~~------~-~~Gey~asCS~DGkv~I~sl~~~~~~~~~d 110 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGN-----P-KTNFDHS-----SS------I-LEGEYVASCSDDGKVVIGSLFTDDEITQYD 110 (846)
T ss_pred cceeeeccccceEEEEecCCc-----c-ccccccc-----cc------c-cCCceEEEecCCCcEEEeeccCCccceeEe
Confidence 345555553 6777776652 2 3333343 21 3 679999999999999999988887776655
Q ss_pred cccccEEEEEec-C-----CCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558 83 AHDKEVYDIAWG-G-----VGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV 156 (253)
Q Consensus 83 ~~~~~v~~~~~~-~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~ 156 (253)
...++.+++++ + .+.+++|+..| +.++.-+--...... .....+++|.++.| .+++||=++..| |+
T Consensus 111 -f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W---~g~lIAWand~G--v~ 182 (846)
T KOG2066|consen 111 -FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKW---RGNLIAWANDDG--VK 182 (846)
T ss_pred -cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEe---cCcEEEEecCCC--cE
Confidence 45688899887 4 56899999999 777754322211122 23455679999999 578888887666 99
Q ss_pred EEECCCCCCCeeeecc-c-----ccceeEEEEecCCCCeEEEecCCCcEEEEeccCC
Q 035558 157 VLDIRFPTLPVVELQR-H-----QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM 207 (253)
Q Consensus 157 ~~d~~~~~~~~~~~~~-~-----~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 207 (253)
+||+.+.+. +..++. + ......+.|.++. .|+.|= ..+|+|..++..
T Consensus 183 vyd~~~~~~-l~~i~~p~~~~R~e~fpphl~W~~~~--~LVIGW-~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 183 VYDTPTRQR-LTNIPPPSQSVRPELFPPHLHWQDED--RLVIGW-GDSVKICSIKKR 235 (846)
T ss_pred EEeccccce-eeccCCCCCCCCcccCCCceEecCCC--eEEEec-CCeEEEEEEecc
Confidence 999987553 333222 1 2234568888875 566665 447999988843
No 307
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=8.6e-07 Score=74.08 Aligned_cols=195 Identities=12% Similarity=0.146 Sum_probs=124.5
Q ss_pred CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeeccccc-EEEEEec-CCCeEEEEeCCCc-----EEEEEcCCC
Q 035558 44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKE-VYDIAWG-GVGVFASVSADGS-----VRVFDLRDK 116 (253)
Q Consensus 44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~-~~~~l~~~~~dg~-----i~i~d~~~~ 116 (253)
.|.+ |+ +++..++.|+.+|.|.+.+-. .+.++.++.+... |..+-.. ..++|++.+.|+. +++||++..
T Consensus 27 ~isc--~~-s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 27 AISC--CS-SSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred ceeE--Ec-CCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence 4444 44 778899999999998887653 4455777777766 4443333 4468888777654 999999754
Q ss_pred CC---eeee-----ec--cCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC---CCCCCeeeecccccceeEEEEe
Q 035558 117 EH---STII-----YE--SSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR---FPTLPVVELQRHQASVNAIAWA 183 (253)
Q Consensus 117 ~~---~~~~-----~~--~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~---~~~~~~~~~~~~~~~i~~~~~~ 183 (253)
+. +..+ .. .+....++.+++.+. +-+.+|+|-.+|. |..+.-. .......-......+|+.+++.
T Consensus 103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~-V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~ 180 (933)
T KOG2114|consen 103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGL-VICYKGDILRDRGSRQDYSHRGKEPITGLALR 180 (933)
T ss_pred CCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcE-EEEEcCcchhccccceeeeccCCCCceeeEEe
Confidence 21 2222 22 222356889999998 6777777777776 8777432 1111122222345799999999
Q ss_pred cCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 184 PHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 184 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
.++...++++ .-..|.+|.+.... |. ......|+..+++.++++....+++++. ..+.+++
T Consensus 181 ~d~~s~lFv~-Tt~~V~~y~l~gr~-p~-----~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~ 241 (933)
T KOG2114|consen 181 SDGKSVLFVA-TTEQVMLYSLSGRT-PS-----LKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYD 241 (933)
T ss_pred cCCceeEEEE-ecceeEEEEecCCC-cc-----eeeeccCCccceeeecCCCCccEEEecC-ceEEEEc
Confidence 9984323333 34679999998544 43 2346678889999999887654555443 3455553
No 308
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.81 E-value=2.3e-09 Score=86.22 Aligned_cols=198 Identities=14% Similarity=0.220 Sum_probs=130.3
Q ss_pred CCeeEEEecC-CCCCEEEEEeCCCeEEEEeccCcee--eeeeecccccEEEEEec--CCCeEEEEeC----CCcEEEEEc
Q 035558 43 GPLTSFDWNE-AEPRRIGTSSIDTTCTIWDIEREAV--DTQLIAHDKEVYDIAWG--GVGVFASVSA----DGSVRVFDL 113 (253)
Q Consensus 43 ~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~--~~~~l~~~~~----dg~i~i~d~ 113 (253)
..+.|+++.- .+...++.|..+|.|-+-.++...- -...+++..+.++++|+ |.+.||.|-. |-.+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 4566777652 2335788999999999988765432 23345678899999999 7888888743 667999999
Q ss_pred CCCC--CeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEE
Q 035558 114 RDKE--HSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHIC 191 (253)
Q Consensus 114 ~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 191 (253)
.+.- +...............+++|.. +.+++++|..... ++++|+|........+ .+..+..+...|-.+.+++
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~-~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRS-VHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred ccccCCCccccccccccccCcccccccc-Ccchhhcccccch-hhhhhhhhhhhhhhhh--hhhhcccceecCCCCCcee
Confidence 8762 1111111112233566888885 7788888887777 9999999543222222 3456777888885445777
Q ss_pred EecCCCcEEEEe-ccCCCCCCCCCCCCeeeccC-----CCceeEEEEcCCCCceEEEEc--CCcEEEEE
Q 035558 192 TAGDDSQALIWD-LSSMGQPVEGGLDPILAYTA-----GAEIEQLQWSSSQPDWVAIAF--STKLQILR 252 (253)
Q Consensus 192 ~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~--~~~i~vw~ 252 (253)
+-. ||.|.+|| .++.+.+. ....| ...+..++|.|....+++... .+.|+.++
T Consensus 213 s~~-dg~iAiwD~~rnienpl-------~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlyd 273 (783)
T KOG1008|consen 213 SNS-DGDIAIWDTYRNIENPL-------QIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYD 273 (783)
T ss_pred ccc-cCceeeccchhhhccHH-------HHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEec
Confidence 666 99999999 55555443 22222 225899999998776665433 34455554
No 309
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=4.4e-06 Score=70.03 Aligned_cols=188 Identities=13% Similarity=0.150 Sum_probs=118.1
Q ss_pred eEEeecCcEEEEEccCCccccceeeeecCCCCccccCC-eeEEEecCCCCCEEEEEeCCC-----eEEEEeccCce----
Q 035558 7 LLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGP-LTSFDWNEAEPRRIGTSSIDT-----TCTIWDIEREA---- 76 (253)
Q Consensus 7 ~l~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~---- 76 (253)
.+|.|+...+||-++.. .+....++.+. .. |..+..- ...++|++.+.|+ .|++|+++..+
T Consensus 37 ~vvigt~~G~V~~Ln~s---~~~~~~fqa~~-----~siv~~L~~~-~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 37 SVVIGTADGRVVILNSS---FQLIRGFQAYE-----QSIVQFLYIL-NKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred eEEEeeccccEEEeccc---ceeeehheecc-----hhhhhHhhcc-cCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 44444433344444433 25557778777 45 4444333 4446788877665 48999987531
Q ss_pred --eee--eeec-----ccccEEEEEec-CCCeEEEEeCCCcEEEEEcC--CCCCeeeeeccCCCCCCeeEEEeeCCCCCE
Q 035558 77 --VDT--QLIA-----HDKEVYDIAWG-GVGVFASVSADGSVRVFDLR--DKEHSTIIYESSEPDTPLVRLGWNKQDPRY 144 (253)
Q Consensus 77 --~~~--~~~~-----~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 144 (253)
++. .+.+ ...++.+++.+ +-..++.|-.+|.|..+.-+ .....+..... ..+.+|+.+++.. ++..
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~-~~~~pITgL~~~~-d~~s 185 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSH-RGKEPITGLALRS-DGKS 185 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeec-cCCCCceeeEEec-CCce
Confidence 221 1112 35678899999 98999999999999988432 22222233333 3345999999987 6655
Q ss_pred EEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558 145 MATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 145 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
++.+..... |.+|.+.........+..|...++|..+++..+ .+++++ +..+.+|+....+
T Consensus 186 ~lFv~Tt~~-V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~-qfIca~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 186 VLFVATTEQ-VMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTY-QFICAG-SEFLYFYDSDGRG 246 (933)
T ss_pred eEEEEecce-eEEEEecCCCcceeeeccCCccceeeecCCCCc-cEEEec-CceEEEEcCCCcc
Confidence 333344455 999999854422445777888999999998764 344444 3568999887543
No 310
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.80 E-value=8.2e-06 Score=65.35 Aligned_cols=219 Identities=12% Similarity=-0.023 Sum_probs=117.9
Q ss_pred CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec
Q 035558 5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA 83 (253)
Q Consensus 5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 83 (253)
+.+++.+.+ .+..+|..++ +.+....... .+.+.-. ..+..++.++.+|.|+.+|.++++.+..+..
T Consensus 106 ~~v~v~~~~g~l~ald~~tG----~~~W~~~~~~------~~~~~p~--v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDG----KELWRAKLSS------EVLSPPL--VANGLVVVRTNDGRLTALDAATGERLWTYSR 173 (377)
T ss_pred CEEEEEcCCCEEEEEECCCC----cEeeeeccCc------eeecCCE--EECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence 334444445 8888888776 4444333221 1211100 1245677778899999999999987766653
Q ss_pred ccccEE-----EEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeecc-CCCCCCe---eEEEeeC-CCCCEEEEEEeCCC
Q 035558 84 HDKEVY-----DIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYES-SEPDTPL---VRLGWNK-QDPRYMATIIMDSA 153 (253)
Q Consensus 84 ~~~~v~-----~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~i---~~~~~~~-~~~~~l~~~~~~~~ 153 (253)
...... .... .+..++.+..+|.+..+|.++++..-..... ......+ ..+.-+| -.+..+++++.++.
T Consensus 174 ~~~~~~~~~~~sp~~-~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~ 252 (377)
T TIGR03300 174 VTPALTLRGSASPVI-ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGR 252 (377)
T ss_pred CCCceeecCCCCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCE
Confidence 222111 1111 2456778888999999999888632211100 0000000 0000011 02456777777887
Q ss_pred eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC-CCceeEEEE
Q 035558 154 KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA-GAEIEQLQW 232 (253)
Q Consensus 154 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~ 232 (253)
+..+|.++++. +..... . ....... .+ ..++.++.||.+..+|..+++..- ..... .....+...
T Consensus 253 -l~a~d~~tG~~-~W~~~~-~-~~~~p~~--~~-~~vyv~~~~G~l~~~d~~tG~~~W-------~~~~~~~~~~ssp~i 318 (377)
T TIGR03300 253 -VAALDLRSGRV-LWKRDA-S-SYQGPAV--DD-NRLYVTDADGVVVALDRRSGSELW-------KNDELKYRQLTAPAV 318 (377)
T ss_pred -EEEEECCCCcE-EEeecc-C-CccCceE--eC-CEEEEECCCCeEEEEECCCCcEEE-------ccccccCCccccCEE
Confidence 99999987653 333321 1 1122222 34 378888899999999998876332 00000 111111112
Q ss_pred cCCCCceEEEEcCCcEEEEE
Q 035558 233 SSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 233 ~~~~~~~~~~~~~~~i~vw~ 252 (253)
.+..+++++.++.+.+++
T Consensus 319 --~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 319 --VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred --ECCEEEEEeCCCEEEEEE
Confidence 234577777788777775
No 311
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.80 E-value=7.2e-06 Score=61.17 Aligned_cols=215 Identities=14% Similarity=0.032 Sum_probs=120.7
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEe
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAW 93 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 93 (253)
.|..||..++ +.+....-... . ....+... ..+..+++++.++.|..||..+++.+..... ..++.....
T Consensus 4 ~l~~~d~~tG----~~~W~~~~~~~--~-~~~~~~~~--~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~ 73 (238)
T PF13360_consen 4 TLSALDPRTG----KELWSYDLGPG--I-GGPVATAV--PDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV 73 (238)
T ss_dssp EEEEEETTTT----EEEEEEECSSS--C-SSEEETEE--EETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE
T ss_pred EEEEEECCCC----CEEEEEECCCC--C-CCccceEE--EeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee
Confidence 6788888776 55555432110 0 22222222 2466777788999999999999998877663 222111112
Q ss_pred cCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCC-CCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc
Q 035558 94 GGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPD-TPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR 172 (253)
Q Consensus 94 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 172 (253)
..+..++.+..++.+..+|..+++..-......... .......... .+..++++..++. |..+|.++++. +.....
T Consensus 74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-l~~~d~~tG~~-~w~~~~ 150 (238)
T PF13360_consen 74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGK-LVALDPKTGKL-LWKYPV 150 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSE-EEEEETTTTEE-EEEEES
T ss_pred ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEeccCc-EEEEecCCCcE-EEEeec
Confidence 246666777788899999999988544422211111 1111222222 3677777777777 99999998764 444433
Q ss_pred cccc----------eeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE
Q 035558 173 HQAS----------VNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI 242 (253)
Q Consensus 173 ~~~~----------i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 242 (253)
.... +..-....++ .++.++.++.+..+|+++++.. .... ...+..+ ....+..++..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~~d~~tg~~~--------w~~~-~~~~~~~-~~~~~~~l~~~ 218 (238)
T PF13360_consen 151 GEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGRVVAVDLATGEKL--------WSKP-ISGIYSL-PSVDGGTLYVT 218 (238)
T ss_dssp STT-SS--EEEETTEEEEEECCTT--EEEEECCTSSEEEEETTTTEEE--------EEEC-SS-ECEC-EECCCTEEEEE
T ss_pred CCCCCCcceeeecccccceEEECC--EEEEEcCCCeEEEEECCCCCEE--------EEec-CCCccCC-ceeeCCEEEEE
Confidence 2211 1122222233 6666777775444498887621 1111 2223332 23455566666
Q ss_pred EcCCcEEEEEC
Q 035558 243 AFSTKLQILRV 253 (253)
Q Consensus 243 ~~~~~i~vw~l 253 (253)
+.++.+..|++
T Consensus 219 ~~~~~l~~~d~ 229 (238)
T PF13360_consen 219 SSDGRLYALDL 229 (238)
T ss_dssp ETTTEEEEEET
T ss_pred eCCCEEEEEEC
Confidence 68888888874
No 312
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.80 E-value=5.3e-06 Score=66.87 Aligned_cols=112 Identities=14% Similarity=0.206 Sum_probs=79.9
Q ss_pred eeEEEecCCCCCEEEEE----eCCCeE----EEEeccCceee----eeeecccccEEEEEec-CCCeEEEEeCCCcEEEE
Q 035558 45 LTSFDWNEAEPRRIGTS----SIDTTC----TIWDIEREAVD----TQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVF 111 (253)
Q Consensus 45 v~~~~~~~~~~~~l~~~----~~dg~i----~vwd~~~~~~~----~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~ 111 (253)
..++.|+-.++..+.+. +.+|.+ .+|+....+.. ..+ ..+..|.+.+++ +.+.++.|+.||.|.+|
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 35777874455666554 334432 45666544321 122 467889999999 99999999999999999
Q ss_pred EcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC
Q 035558 112 DLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT 164 (253)
Q Consensus 112 d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~ 164 (253)
|...+..... ...-..+.++|+| ++.++++|+..|. +.+||+.-..
T Consensus 287 D~~~~~t~~~-----ka~~~P~~iaWHp-~gai~~V~s~qGe-lQ~FD~ALsp 332 (545)
T PF11768_consen 287 DTTRGVTLLA-----KAEFIPTLIAWHP-DGAIFVVGSEQGE-LQCFDMALSP 332 (545)
T ss_pred EcCCCeeeee-----eecccceEEEEcC-CCcEEEEEcCCce-EEEEEeecCc
Confidence 9987642211 2223678899999 9999999999998 9999987544
No 313
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.76 E-value=1.7e-06 Score=69.57 Aligned_cols=145 Identities=11% Similarity=0.219 Sum_probs=95.2
Q ss_pred ccEEEEEec--CCCeEEEE----eCCCc----EEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558 86 KEVYDIAWG--GVGVFASV----SADGS----VRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV 155 (253)
Q Consensus 86 ~~v~~~~~~--~~~~l~~~----~~dg~----i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i 155 (253)
....++.|+ ++..+.+. +.+|. -.+|++..++...........++.+.+++++| +...++.|+.||. |
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgS-i 283 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGS-I 283 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCe-E
Confidence 344667777 55556554 23443 34566665543222222224455899999999 8999999999999 9
Q ss_pred EEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC---CCCCCC------eeeccCCCc
Q 035558 156 VVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV---EGGLDP------ILAYTAGAE 226 (253)
Q Consensus 156 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~------~~~~~~~~~ 226 (253)
.+||..... .......-.++.++|+|+| .++++|+.-|.+.+||+.-..... .+...| ...+.+...
T Consensus 284 iLyD~~~~~---t~~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~ 359 (545)
T PF11768_consen 284 ILYDTTRGV---TLLAKAEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSS 359 (545)
T ss_pred EEEEcCCCe---eeeeeecccceEEEEcCCC-cEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCcch
Confidence 999987643 3333344567889999999 599999999999999997543211 111111 122345677
Q ss_pred eeEEEEcCCC
Q 035558 227 IEQLQWSSSQ 236 (253)
Q Consensus 227 v~~~~~~~~~ 236 (253)
+..+.|.+..
T Consensus 360 L~~iqW~~~~ 369 (545)
T PF11768_consen 360 LVHIQWAPAP 369 (545)
T ss_pred hheeEeccCC
Confidence 7888998543
No 314
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=9.6e-08 Score=74.02 Aligned_cols=195 Identities=14% Similarity=0.145 Sum_probs=136.5
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC-CCeEEEEeccCceeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI-DTTCTIWDIEREAVDT 79 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~ 79 (253)
...+++.+++ | .++.|.-..- ...+.+..+..|. ..|.+++.+ .++.++.+.+. |..++++|+++-..+.
T Consensus 18 tka~fiiqASlDGh~KFWkKs~i-sGvEfVKhFraHL-----~~I~sl~~S-~dg~L~~Sv~d~Dhs~KvfDvEn~Dmin 90 (558)
T KOG0882|consen 18 TKAKFIIQASLDGHKKFWKKSRI-SGVEFVKHFRAHL-----GVILSLAVS-YDGWLFRSVEDPDHSVKVFDVENFDMIN 90 (558)
T ss_pred ehhheEEeeecchhhhhcCCCCc-cceeehhhhHHHH-----HHHHhhhcc-ccceeEeeccCcccceeEEEeeccchhh
Confidence 3455677777 5 9999986542 2235566677777 888999988 88999999777 9999999998776554
Q ss_pred eeecccccEEEEEec--CCC---eEE-EEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC
Q 035558 80 QLIAHDKEVYDIAWG--GVG---VFA-SVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA 153 (253)
Q Consensus 80 ~~~~~~~~v~~~~~~--~~~---~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 153 (253)
-++- ......+.|. .+. .++ +.-.++.+.++|-....+.... ....|..+|..+.++| .+..+++....|-
T Consensus 91 miKL-~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~-fkklH~sPV~~i~y~q-a~Ds~vSiD~~gm 167 (558)
T KOG0882|consen 91 MIKL-VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY-FKKLHFSPVKKIRYNQ-AGDSAVSIDISGM 167 (558)
T ss_pred hccc-ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccce-ecccccCceEEEEeec-cccceeeccccce
Confidence 3331 1222333444 331 333 3446889999998877644333 3345667999999999 8888888877777
Q ss_pred eEEEEECCC-CCCC-------------eeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCC
Q 035558 154 KVVVLDIRF-PTLP-------------VVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQ 209 (253)
Q Consensus 154 ~i~~~d~~~-~~~~-------------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 209 (253)
|.-|.... .+.| +..+........++.|+|++ ..+.+-+.|..|+++++.+++.
T Consensus 168 -VEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 168 -VEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred -eEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc-CcccccCcccEEEEEEeccchh
Confidence 99998773 1111 11122334567899999999 5899989999999999998873
No 315
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=6e-07 Score=74.28 Aligned_cols=195 Identities=9% Similarity=0.086 Sum_probs=133.3
Q ss_pred CCCCCceEEeecC---cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecC--CCC-CEEEEEeCCCeEEEEeccC
Q 035558 1 ECQKPDLLATSSD---FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNE--AEP-RRIGTSSIDTTCTIWDIER 74 (253)
Q Consensus 1 sp~~~~~l~~~~~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~-~~l~~~~~dg~i~vwd~~~ 74 (253)
||+...++.+.+| .|-+||.... ..+..++.|. .++..++|-| ++. ..|++-....+|.+|+..+
T Consensus 74 S~~~~~lliAsaD~~GrIil~d~~~~----s~~~~l~~~~-----~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdt 144 (1062)
T KOG1912|consen 74 SPSSSQLLIASADISGRIILVDFVLA----SVINWLSHSN-----DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDT 144 (1062)
T ss_pred CccccceeEEeccccCcEEEEEehhh----hhhhhhcCCC-----cchhheeeeeccCcchheeEEecCCcEEEEEEccC
Confidence 3454555555555 9999999887 6677788887 8899999864 223 5666667778999999999
Q ss_pred ceeeeeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCe----eeeeccCCC----------------CC--
Q 035558 75 EAVDTQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHS----TIIYESSEP----------------DT-- 130 (253)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~----------------~~-- 130 (253)
|+.............|+.+. +.+.+..-+..|.+.+.+.-...++ +.++....+ ..
T Consensus 145 G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~ 224 (1062)
T KOG1912|consen 145 GEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTP 224 (1062)
T ss_pred CceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCC
Confidence 99888877666677788888 8888888888888887766433211 111110010 00
Q ss_pred -------CeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCC-eEEEecCCCcEEEE
Q 035558 131 -------PLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSC-HICTAGDDSQALIW 202 (253)
Q Consensus 131 -------~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~iw 202 (253)
....++|+| .-+.++....... +.++|++-.. ++....-..+.+.-+.+-|+..+ .|++...||.+.+|
T Consensus 225 ~sa~fity~a~faf~p-~~rn~lfi~~pre-llv~dle~~~-~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 225 ASAYFITYCAQFAFSP-HWRNILFITFPRE-LLVFDLEYEC-CLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred cchhHHHHHHhhhcCh-hhhceEEEEeccc-eEEEcchhhc-eeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEE
Confidence 122367788 4444444455555 9999998744 46666656666677888887633 78889999999999
Q ss_pred eccCC
Q 035558 203 DLSSM 207 (253)
Q Consensus 203 d~~~~ 207 (253)
-.+..
T Consensus 302 vrk~~ 306 (1062)
T KOG1912|consen 302 VRKEE 306 (1062)
T ss_pred Eeecc
Confidence 76653
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=4.2e-07 Score=69.58 Aligned_cols=163 Identities=13% Similarity=0.162 Sum_probs=105.4
Q ss_pred EEEEeccCceeeeeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCE
Q 035558 67 CTIWDIEREAVDTQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRY 144 (253)
Q Consensus 67 i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 144 (253)
+++.+..+.+..+-+..+...|.+++|+ +..++..++.+.+|++.|+++....... ..+ ..+++++|+-++.++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy---~a~-~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY---IAY-NQIWSCCWDLDERHV 250 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe---ecc-CCceeeeeccCCcce
Confidence 4444444444555566788899999999 5558999999999999999998643333 233 389999999977788
Q ss_pred EEEEEeCCCeEEEEECCCCCCCeeeeccc--ccceeEEEEe------cCCCCeEEEecCCCcEEEEeccCCCCCCCCCCC
Q 035558 145 MATIIMDSAKVVVLDIRFPTLPVVELQRH--QASVNAIAWA------PHSSCHICTAGDDSQALIWDLSSMGQPVEGGLD 216 (253)
Q Consensus 145 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~i~~~~~~------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 216 (253)
|+.|-.+|. |.+||+|..+.++..+.+. ..+|..++.- +.+ .+|+..+.+ +..|++.....-. .
T Consensus 251 IYaGl~nG~-VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~g-glLv~~lt~--l~f~ei~~s~~~~----p 322 (463)
T KOG1645|consen 251 IYAGLQNGM-VLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSG-GLLVFALTV--LQFYEIVFSAECL----P 322 (463)
T ss_pred eEEeccCce-EEEEEccCCCchHhhhhhhhccCcceeecccCcccccccc-ceEEeeehh--hhhhhhhccccCC----C
Confidence 888888888 9999999988766666542 2344444332 334 255555544 4556655432111 1
Q ss_pred CeeeccCCCceeEEEEcCCCCceEE
Q 035558 217 PILAYTAGAEIEQLQWSSSQPDWVA 241 (253)
Q Consensus 217 ~~~~~~~~~~v~~~~~~~~~~~~~~ 241 (253)
+....+..+...+++.++..+.++.
T Consensus 323 ~vlele~pG~cismqy~~~snh~l~ 347 (463)
T KOG1645|consen 323 CVLELEPPGICISMQYHGVSNHLLL 347 (463)
T ss_pred cccccCCCcceeeeeecCccceEEE
Confidence 1122233556667777665555554
No 317
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.65 E-value=2.2e-05 Score=58.52 Aligned_cols=184 Identities=10% Similarity=0.025 Sum_probs=110.3
Q ss_pred CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee-
Q 035558 4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL- 81 (253)
Q Consensus 4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~- 81 (253)
++.++++..+ .|..||..++ +.+....... ++..... ..+..++.++.++.|+.+|.++++.+...
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG----~~~W~~~~~~------~~~~~~~--~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~ 103 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTG----KVLWRFDLPG------PISGAPV--VDGGRVYVGTSDGSLYALDAKTGKVLWSIY 103 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTS----EEEEEEECSS------CGGSGEE--EETTEEEEEETTSEEEEEETTTSCEEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCC----CEEEEeeccc------cccceee--ecccccccccceeeeEecccCCcceeeeec
Confidence 4555555455 9999999887 6666555422 1111111 23566777778889999999999988774
Q ss_pred eccc---ccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCC-CCCe-------eEEEeeCCCCCEEEEEE
Q 035558 82 IAHD---KEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEP-DTPL-------VRLGWNKQDPRYMATII 149 (253)
Q Consensus 82 ~~~~---~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~i-------~~~~~~~~~~~~l~~~~ 149 (253)
.... ......... .++.++.+..++.|..+|.++++..-........ ...+ ..+.+. ++ .+..++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~ 180 (238)
T PF13360_consen 104 LTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS--DG-RVYVSS 180 (238)
T ss_dssp E-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC--TT-EEEEEC
T ss_pred cccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE--CC-EEEEEc
Confidence 3221 111223333 5788888888999999999999743333221111 1111 223332 33 777777
Q ss_pred eCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558 150 MDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 150 ~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
.++. +..+|+.+++. +.... ...+..+ ..+.+ ..|+.++.++.+..||+++++
T Consensus 181 ~~g~-~~~~d~~tg~~-~w~~~--~~~~~~~-~~~~~-~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 181 GDGR-VVAVDLATGEK-LWSKP--ISGIYSL-PSVDG-GTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp CTSS-EEEEETTTTEE-EEEEC--SS-ECEC-EECCC-TEEEEEETTTEEEEEETTTTE
T ss_pred CCCe-EEEEECCCCCE-EEEec--CCCccCC-ceeeC-CEEEEEeCCCEEEEEECCCCC
Confidence 7776 44449988763 33222 2223331 34555 377777799999999999976
No 318
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.61 E-value=8.8e-05 Score=55.20 Aligned_cols=200 Identities=8% Similarity=0.061 Sum_probs=111.0
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecc-cccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCC--
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAH-DKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEH-- 118 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~-- 118 (253)
..+..++|+|.++.++++....+.|..++.+ ++.+..+.-. .+..-.+++. ++.++++--.++.+.++++.....
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 5699999995556677788888889888875 7777766532 3567888998 676666665689999999944321
Q ss_pred -ee---eee--ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCC--CCCCee--ee------cccccceeEEEE
Q 035558 119 -ST---IIY--ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF--PTLPVV--EL------QRHQASVNAIAW 182 (253)
Q Consensus 119 -~~---~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~--~~~~~~--~~------~~~~~~i~~~~~ 182 (253)
.. .+. .....+..+-.++|+|..+.++ ++-...- ..+|.++. ....+. .. ......+.++++
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~ 178 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKP-KRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY 178 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSS-EEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCC-hhhEEEccccCccceeeccccccccccceeccccceEE
Confidence 11 111 1123445788999999444444 4455544 66666553 111111 11 112345788999
Q ss_pred ecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeecc-------CCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 183 APHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYT-------AGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 183 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
+|..+++++....+..|..+|.. ++... ...+.. .-.+.-.|+|.++|. +..++.-+...+++
T Consensus 179 ~p~t~~lliLS~es~~l~~~d~~-G~~~~-----~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f~ 248 (248)
T PF06977_consen 179 DPRTGHLLILSDESRLLLELDRQ-GRVVS-----SLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFYRFE 248 (248)
T ss_dssp ETTTTEEEEEETTTTEEEEE-TT---EEE-----EEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEEEE
T ss_pred cCCCCeEEEEECCCCeEEEECCC-CCEEE-----EEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCceEEEeC
Confidence 99876788888889999999843 33111 011111 124577899999996 66677777666653
No 319
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.60 E-value=3.4e-05 Score=61.22 Aligned_cols=205 Identities=15% Similarity=0.226 Sum_probs=121.4
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCee-EEEecCCCCCEEEEEeCCCeEEEEeccCceee-eeeecc-cccEEE
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLT-SFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD-TQLIAH-DKEVYD 90 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~-~~~v~~ 90 (253)
.+.+||..++ ..+..+.+.... .... -+.|+ .+..++|-- ....++|+++ +.... ..+... ...|..
T Consensus 109 ~~~vwd~~sg----~iv~sf~~~~q~---~~~Wp~~k~s-~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~d 178 (561)
T COG5354 109 NVFVWDIASG----MIVFSFNGISQP---YLGWPVLKFS-IDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILD 178 (561)
T ss_pred ceeEEeccCc----eeEeeccccCCc---ccccceeeee-ecchhhhhh-ccCeEEEEec-CCccccCchhhccccceee
Confidence 4899999998 777777776621 1133 56777 667666544 3457999997 33311 111111 245777
Q ss_pred EEec---CCCeEEE-----EeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe-----------C
Q 035558 91 IAWG---GVGVFAS-----VSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM-----------D 151 (253)
Q Consensus 91 ~~~~---~~~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----------~ 151 (253)
..|+ ++..|+. .+.++.+++|.+..+........... .-..+.|++ .++++++--. .
T Consensus 179 FsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~---~~~qLkW~~-~g~~ll~l~~t~~ksnKsyfge 254 (561)
T COG5354 179 FSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV---SGVQLKWQV-LGKYLLVLVMTHTKSNKSYFGE 254 (561)
T ss_pred EEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee---cccEEEEec-CCceEEEEEEEeeecccceecc
Confidence 7777 3334443 45678899999986653332222111 234688888 6666554211 1
Q ss_pred CCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEE-ecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEE
Q 035558 152 SAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICT-AGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQL 230 (253)
Q Consensus 152 ~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~ 230 (253)
.. +++++++....++. ..-.++|...+|.|.+.++.+. |-.+-.+.++|++..- .......+=+.+
T Consensus 255 sn-Lyl~~~~e~~i~V~--~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl----------~~~~Pe~~rNT~ 321 (561)
T COG5354 255 SN-LYLLRITERSIPVE--KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL----------RFYFPEQKRNTI 321 (561)
T ss_pred ce-EEEEeeccccccee--ccccccceeeeecccCCceeEEecccccceeecccccce----------EEecCCcccccc
Confidence 23 88888885443332 2557899999999998544333 3578889999988742 222223333445
Q ss_pred EEcCCCCceEEEEcC
Q 035558 231 QWSSSQPDWVAIAFS 245 (253)
Q Consensus 231 ~~~~~~~~~~~~~~~ 245 (253)
.|+|.+++++.++.+
T Consensus 322 ~fsp~~r~il~agF~ 336 (561)
T COG5354 322 FFSPHERYILFAGFD 336 (561)
T ss_pred cccCcccEEEEecCC
Confidence 556665555554444
No 320
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.60 E-value=3.9e-05 Score=59.92 Aligned_cols=103 Identities=18% Similarity=0.033 Sum_probs=73.6
Q ss_pred CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeC----------CCcEEEEEcCCCCCeeeeeccCCC----C
Q 035558 65 TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSA----------DGSVRVFDLRDKEHSTIIYESSEP----D 129 (253)
Q Consensus 65 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~----~ 129 (253)
++|.+.|..+++.+..+..-..+- .+ ++ +++.++.+.. +..|.+||..+.+....+.....+ .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 799999999999888887433333 34 78 7777766654 789999999999866555432221 1
Q ss_pred CCeeEEEeeCCCCCEEEEEEeC-CCeEEEEECCCCCCCeeeec
Q 035558 130 TPLVRLGWNKQDPRYMATIIMD-SAKVVVLDIRFPTLPVVELQ 171 (253)
Q Consensus 130 ~~i~~~~~~~~~~~~l~~~~~~-~~~i~~~d~~~~~~~~~~~~ 171 (253)
.....++++| +++++++...+ ...|.+.|+.+.+. +.++.
T Consensus 105 ~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kv-v~ei~ 145 (352)
T TIGR02658 105 TYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAF-VRMMD 145 (352)
T ss_pred CccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcE-EEEEe
Confidence 1344789999 99999887755 55599999998663 44444
No 321
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.58 E-value=8.9e-05 Score=54.80 Aligned_cols=188 Identities=10% Similarity=0.114 Sum_probs=100.3
Q ss_pred CCCceEEeecC--cEEEEEccCCccccceeeeecCC-CCccccCCeeEEEecCCC-----CCEEEEEeCCCeEEEEeccC
Q 035558 3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGN-KNSEYCGPLTSFDWNEAE-----PRRIGTSSIDTTCTIWDIER 74 (253)
Q Consensus 3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~vwd~~~ 74 (253)
+++.+||.+.. +|++||+... .+...-..+ ...+...+|-.+.|-+.. ...|+.-..+|.++-|-+..
T Consensus 53 pD~tlLa~a~S~G~i~vfdl~g~----~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~ 128 (282)
T PF15492_consen 53 PDCTLLAYAESTGTIRVFDLMGS----ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSV 128 (282)
T ss_pred CCCcEEEEEcCCCeEEEEecccc----eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEc
Confidence 45567776654 9999999863 222221222 122333678888886432 22455566788887776532
Q ss_pred c-----eeeeeee---cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEE
Q 035558 75 E-----AVDTQLI---AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYM 145 (253)
Q Consensus 75 ~-----~~~~~~~---~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 145 (253)
+ +....+. .+...|.++.|+ ..++|+.|+.... +.+. .......+++-..-...+.+.
T Consensus 129 gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~-------s~a~~~GLtaWRiL~~~Pyyk 195 (282)
T PF15492_consen 129 GTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM-------SKASSCGLTAWRILSDSPYYK 195 (282)
T ss_pred ccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc-------ccccccCceEEEEcCCCCcEE
Confidence 2 2333333 246789999999 7777777764322 0000 001111222222211112222
Q ss_pred EEEEeCCC------eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCC
Q 035558 146 ATIIMDSA------KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQ 209 (253)
Q Consensus 146 ~~~~~~~~------~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 209 (253)
-+...+.. +-.++.+-+.+. ..........|..|..+||| .+|++...+|.|.+|++.+...
T Consensus 196 ~v~~~~~~~~~~~~~~~~~~~~~~~~-fs~~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 196 QVTSSEDDITASSKRRGLLRIPSFKF-FSRQGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred EccccCccccccccccceeeccceee-eeccccCCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcchh
Confidence 22222111 012222221110 01112235679999999999 6999999999999999998764
No 322
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.57 E-value=0.00014 Score=56.91 Aligned_cols=188 Identities=12% Similarity=0.088 Sum_probs=109.3
Q ss_pred CCEEEEEeC----------CCeEEEEeccCc----eeeeee--ecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCC
Q 035558 55 PRRIGTSSI----------DTTCTIWDIERE----AVDTQL--IAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEH 118 (253)
Q Consensus 55 ~~~l~~~~~----------dg~i~vwd~~~~----~~~~~~--~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 118 (253)
..+++.|+. .|.|.++++... ..+..+ ....++|++++-.++.++++. .+.|.+|++...+.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~--g~~l~v~~l~~~~~ 119 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAV--GNKLYVYDLDNSKT 119 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEE--TTEEEEEEEETTSS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEee--cCEEEEEEccCccc
Confidence 567777753 289999999874 122211 235788999887744433333 47899999998872
Q ss_pred eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc--cccceeEEEEecCCCCeEEEecCC
Q 035558 119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR--HQASVNAIAWAPHSSCHICTAGDD 196 (253)
Q Consensus 119 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~d 196 (253)
.......... ..+.++... ++++++|....+ +.++..+.....+..+.. ....++++.|-+++ ..++.+..+
T Consensus 120 l~~~~~~~~~-~~i~sl~~~---~~~I~vgD~~~s-v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~ 193 (321)
T PF03178_consen 120 LLKKAFYDSP-FYITSLSVF---KNYILVGDAMKS-VSLLRYDEENNKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKD 193 (321)
T ss_dssp EEEEEEE-BS-SSEEEEEEE---TTEEEEEESSSS-EEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETT
T ss_pred chhhheecce-EEEEEEecc---ccEEEEEEcccC-EEEEEEEccCCEEEEEEecCCCccEEEEEEecCC-cEEEEEcCC
Confidence 3333222222 256666654 568999988887 888755542222333322 34568889998777 489999999
Q ss_pred CcEEEEeccCCCCCCCCC---CCCeeeccCCCceeEE---EEcCC--CC------ceEEEEcCCcEEE
Q 035558 197 SQALIWDLSSMGQPVEGG---LDPILAYTAGAEIEQL---QWSSS--QP------DWVAIAFSTKLQI 250 (253)
Q Consensus 197 g~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~v~~~---~~~~~--~~------~~~~~~~~~~i~v 250 (253)
|.+.++............ ......+..+..|+++ ++.|. +. .++.++.+|.|.+
T Consensus 194 gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 194 GNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp SEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred CeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 999999887432111111 1122333457788888 55552 22 2777888888764
No 323
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.51 E-value=0.00011 Score=59.32 Aligned_cols=216 Identities=12% Similarity=0.020 Sum_probs=118.1
Q ss_pred CceEEeecC-cEEEEEccCCccccceeeeecCCCCc----cccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558 5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNS----EYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT 79 (253)
Q Consensus 5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 79 (253)
+.+++..++ .+..+|..++ +.+......... ....++ . .+..++.++.+|.+..+|.++++.+.
T Consensus 161 ~~v~v~~~~g~l~ald~~tG----~~~W~~~~~~~~~~~~~~~sP~----v---~~~~v~~~~~~g~v~a~d~~~G~~~W 229 (394)
T PRK11138 161 GLVLVHTSNGMLQALNESDG----AVKWTVNLDVPSLTLRGESAPA----T---AFGGAIVGGDNGRVSAVLMEQGQLIW 229 (394)
T ss_pred CEEEEECCCCEEEEEEccCC----CEeeeecCCCCcccccCCCCCE----E---ECCEEEEEcCCCEEEEEEccCChhhh
Confidence 444444445 7888888776 444444322100 000111 1 12356667788999999999888665
Q ss_pred eeeccc----c---cEEEEEec---CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE
Q 035558 80 QLIAHD----K---EVYDIAWG---GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII 149 (253)
Q Consensus 80 ~~~~~~----~---~v~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 149 (253)
...... . ....+... .+..++.++.+|.+..+|..+++. +...... ....+.. .+..+++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~---~W~~~~~--~~~~~~~---~~~~vy~~~ 301 (394)
T PRK11138 230 QQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI---VWKREYG--SVNDFAV---DGGRIYLVD 301 (394)
T ss_pred eeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE---EEeecCC--CccCcEE---ECCEEEEEc
Confidence 433110 0 00011111 355677778899999999998863 2221111 1112222 455677777
Q ss_pred eCCCeEEEEECCCCCCCeeeeccc-ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCcee
Q 035558 150 MDSAKVVVLDIRFPTLPVVELQRH-QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIE 228 (253)
Q Consensus 150 ~~~~~i~~~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 228 (253)
.++. +..+|..+++. +-....- .....+.... + ..|+.++.||.+.+.|..+++... ...-....+.
T Consensus 302 ~~g~-l~ald~~tG~~-~W~~~~~~~~~~~sp~v~--~-g~l~v~~~~G~l~~ld~~tG~~~~-------~~~~~~~~~~ 369 (394)
T PRK11138 302 QNDR-VYALDTRGGVE-LWSQSDLLHRLLTAPVLY--N-GYLVVGDSEGYLHWINREDGRFVA-------QQKVDSSGFL 369 (394)
T ss_pred CCCe-EEEEECCCCcE-EEcccccCCCcccCCEEE--C-CEEEEEeCCCEEEEEECCCCCEEE-------EEEcCCCcce
Confidence 7887 99999987653 2222110 1112222222 3 378889999999999998876432 1111112222
Q ss_pred -EEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 229 -QLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 229 -~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
+... .++ .++.++.++.+..+++
T Consensus 370 s~P~~-~~~-~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 370 SEPVV-ADD-KLLIQARDGTVYAITR 393 (394)
T ss_pred eCCEE-ECC-EEEEEeCCceEEEEeC
Confidence 1222 233 5888899999988764
No 324
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.45 E-value=0.00029 Score=53.49 Aligned_cols=201 Identities=12% Similarity=0.031 Sum_probs=122.1
Q ss_pred CeeEEEecCCCCCEEEEEeCCC-eEEEEeccCceeeeeeecccccEE--EEEec-CCCeEEEEe-----CCCcEEEEEcC
Q 035558 44 PLTSFDWNEAEPRRIGTSSIDT-TCTIWDIEREAVDTQLIAHDKEVY--DIAWG-GVGVFASVS-----ADGSVRVFDLR 114 (253)
Q Consensus 44 ~v~~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~--~~~~~-~~~~l~~~~-----~dg~i~i~d~~ 114 (253)
....++.+|..+..++.+-.-| ...+||..+++....+....+.-. .-.|+ ++++|++.- ..|.|-+||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 3446778855777777777766 467899999988777654333322 45788 999998864 35889999999
Q ss_pred CCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE------------------eCCCeEEEEECCCCCCCee--ee--cc
Q 035558 115 DKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII------------------MDSAKVVVLDIRFPTLPVV--EL--QR 172 (253)
Q Consensus 115 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~------------------~~~~~i~~~d~~~~~~~~~--~~--~~ 172 (253)
..- ..+.+...+.-....+.+.| ++..|+++. .+.+ +.+.|.++++. +. .+ ..
T Consensus 86 ~~~--~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~ps-L~~ld~~sG~l-l~q~~Lp~~~ 160 (305)
T PF07433_consen 86 RGY--RRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPS-LVYLDARSGAL-LEQVELPPDL 160 (305)
T ss_pred CCc--EEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCc-eEEEecCCCce-eeeeecCccc
Confidence 332 34444444444566788999 786666652 1122 44455555542 22 24 33
Q ss_pred cccceeEEEEecCCCCeEEEecCCCc-------EEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE-EEEc
Q 035558 173 HQASVNAIAWAPHSSCHICTAGDDSQ-------ALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV-AIAF 244 (253)
Q Consensus 173 ~~~~i~~~~~~~~~~~~l~~~~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~ 244 (253)
|...|..+++.++| ..++..-..|. +.+++.... +................+-+|++++++..++ ++-.
T Consensus 161 ~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr 237 (305)
T PF07433_consen 161 HQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR 237 (305)
T ss_pred cccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC
Confidence 67789999999998 34444333221 222222221 1100011112234467899999999997665 4446
Q ss_pred CCcEEEEE
Q 035558 245 STKLQILR 252 (253)
Q Consensus 245 ~~~i~vw~ 252 (253)
.+.+.+|+
T Consensus 238 Gg~~~~~d 245 (305)
T PF07433_consen 238 GGRVAVWD 245 (305)
T ss_pred CCEEEEEE
Confidence 77888886
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.43 E-value=0.00015 Score=63.53 Aligned_cols=158 Identities=16% Similarity=0.265 Sum_probs=99.1
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEec----cCc-------------------eeeeeeeccc--------------
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDI----ERE-------------------AVDTQLIAHD-------------- 85 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~----~~~-------------------~~~~~~~~~~-------------- 85 (253)
..|.+++|+ +++..++..+..+++.+-.- -.. +....+++..
T Consensus 110 ~GI~aaswS-~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~ 188 (1265)
T KOG1920|consen 110 NGISAASWS-PDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKA 188 (1265)
T ss_pred CceEEEeec-CCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccc
Confidence 679999999 89999998888888766432 111 1111122111
Q ss_pred -------ccEEEEEec-CCCeEEEE-----eCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe--
Q 035558 86 -------KEVYDIAWG-GVGVFASV-----SADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM-- 150 (253)
Q Consensus 86 -------~~v~~~~~~-~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-- 150 (253)
+.=+.+.|- +|+++++. .....|++||-+ +.. .... ....+--.+++|-| .|..+++-..
T Consensus 189 ~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~L-ns~s--e~~~~l~~~LsWkP-sgs~iA~iq~~~ 263 (1265)
T KOG1920|consen 189 LEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GAL-NSTS--EPVEGLQHSLSWKP-SGSLIAAIQCKT 263 (1265)
T ss_pred ccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chh-hccc--CcccccccceeecC-CCCeEeeeeecC
Confidence 111348899 99999883 223789999987 321 1111 12222445799999 8888887643
Q ss_pred -CCCeEEEEECCCCCCC--eeeecccccceeEEEEecCCCCeEEE---ecCCCcEEEEeccCCC
Q 035558 151 -DSAKVVVLDIRFPTLP--VVELQRHQASVNAIAWAPHSSCHICT---AGDDSQALIWDLSSMG 208 (253)
Q Consensus 151 -~~~~i~~~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~---~~~dg~i~iwd~~~~~ 208 (253)
++. |.++.-.....- ...+......+..++|+.+++ .|++ ......|++|-+.+..
T Consensus 264 sd~~-IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 264 SDSD-IVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred CCCc-EEEEecCCccccccccCCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCeE
Confidence 334 888875432211 222333445599999999995 7776 4555569999888754
No 326
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.37 E-value=0.00015 Score=63.41 Aligned_cols=199 Identities=15% Similarity=0.217 Sum_probs=123.5
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEc----CCCC
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDL----RDKE 117 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~----~~~~ 117 (253)
..|.++.|. .+.+.++.+..+|.|.+-|.++..... .-.-...|.+++|+ +++.++..+..+++.+-+- -..+
T Consensus 69 ~~i~s~~fl-~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 69 DEIVSVQFL-ADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred cceEEEEEe-cccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 589999999 888889999999999999888765322 22245789999999 9999998888777766432 1111
Q ss_pred Ce-------------------eeeeccCC------------------CCCCeeEEEeeCCCCCEEEEEEe---CC-CeEE
Q 035558 118 HS-------------------TIIYESSE------------------PDTPLVRLGWNKQDPRYMATIIM---DS-AKVV 156 (253)
Q Consensus 118 ~~-------------------~~~~~~~~------------------~~~~i~~~~~~~~~~~~l~~~~~---~~-~~i~ 156 (253)
.. ..+....+ ....=+++.|-- +|.++|+... .+ +.|+
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEE
Confidence 00 00100000 011223588876 8999998432 22 4599
Q ss_pred EEECCCCCCCeeee-cccccceeEEEEecCCCCeEEEec---CCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEE
Q 035558 157 VLDIRFPTLPVVEL-QRHQASVNAIAWAPHSSCHICTAG---DDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQW 232 (253)
Q Consensus 157 ~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 232 (253)
+||.. +. +... ....+.-.+++|-|.| .++++-. .|+.|.+|.......-. ..........++..++|
T Consensus 226 V~drE-g~--Lns~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~hg~----f~l~~p~de~~ve~L~W 297 (1265)
T KOG1920|consen 226 VYDRE-GA--LNSTSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRHGE----FVLPFPLDEKEVEELAW 297 (1265)
T ss_pred Eeccc-ch--hhcccCcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccccc----cccCCcccccchheeee
Confidence 99977 22 1111 1122334579999998 4776543 56789999876544221 00111122334999999
Q ss_pred cCCCCceEE---EEcCCcEEEEE
Q 035558 233 SSSQPDWVA---IAFSTKLQILR 252 (253)
Q Consensus 233 ~~~~~~~~~---~~~~~~i~vw~ 252 (253)
+.++..++. ......|++|-
T Consensus 298 ns~sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 298 NSNSDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred cCCCCceeeeecccccceEEEEE
Confidence 999874443 34444599995
No 327
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.36 E-value=1.6e-05 Score=65.40 Aligned_cols=157 Identities=10% Similarity=0.091 Sum_probs=105.4
Q ss_pred CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee-cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeee
Q 035558 44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI-AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTI 121 (253)
Q Consensus 44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~ 121 (253)
.|.--++. .++++++.|+.-|.+++|+...++....-. +-.+.+.....+ +..++|.|+..|.|.++-+....+...
T Consensus 35 ~v~lTc~d-st~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 35 RVKLTCVD-ATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred eEEEEEee-cCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 34333444 679999999999999999998776443222 334555666677 788899999999999998887654444
Q ss_pred eecc---CCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCC---CCCeeeecccccceeEEEEecCCCCeEEEecC
Q 035558 122 IYES---SEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFP---TLPVVELQRHQASVNAIAWAPHSSCHICTAGD 195 (253)
Q Consensus 122 ~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 195 (253)
++.. ..|...|++++|++ ++..+.+|...|. |..-.+... ..+.+.+..-...|-.+.+... .+|++...
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gk-v~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~--~LLVStl~ 189 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGK-VVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQS--YLLVSTLT 189 (726)
T ss_pred eeeccccccCCceEEEEEecc-cccEEeecCCCce-EEEEEechhhhhccccceeeccCcceEEeecccc--eehHhhhh
Confidence 4322 23466999999999 9999999999998 887777651 1123444445667777776642 24444332
Q ss_pred CCcEEEEeccCC
Q 035558 196 DSQALIWDLSSM 207 (253)
Q Consensus 196 dg~i~iwd~~~~ 207 (253)
.-.+++++..
T Consensus 190 --r~~Lc~tE~e 199 (726)
T KOG3621|consen 190 --RCILCQTEAE 199 (726)
T ss_pred --hhheeecchh
Confidence 2334555543
No 328
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.34 E-value=0.00056 Score=55.30 Aligned_cols=194 Identities=12% Similarity=0.132 Sum_probs=94.9
Q ss_pred EEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce------eeeeeecccccE
Q 035558 15 LRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA------VDTQLIAHDKEV 88 (253)
Q Consensus 15 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~~~v 88 (253)
|++|+... +++..+.-.. +.|.++.|. .+. .|+.-..||.++++|+.... .+....-....+
T Consensus 63 I~iys~sG-----~ll~~i~w~~-----~~iv~~~wt-~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i 130 (410)
T PF04841_consen 63 IQIYSSSG-----KLLSSIPWDS-----GRIVGMGWT-DDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRI 130 (410)
T ss_pred EEEECCCC-----CEeEEEEECC-----CCEEEEEEC-CCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccc
Confidence 77777766 4444444333 578999998 544 45566789999999986333 011111111222
Q ss_pred EEEEec-CCCeEEEEeCCCcEEEEEcCCCC-CeeeeeccCCCCC------CeeE-EEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 89 YDIAWG-GVGVFASVSADGSVRVFDLRDKE-HSTIIYESSEPDT------PLVR-LGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 89 ~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~------~i~~-~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
....+. +|-.++ ..++.+.+..--... ........+.... .... ..++. +....+....++. +.+.+
T Consensus 131 ~~~~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~-i~~i~ 206 (410)
T PF04841_consen 131 FAIWFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGET-IYIID 206 (410)
T ss_pred cccccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec-CcceEEEEecCCE-EEEEE
Confidence 222333 332223 334444443222211 1111111111000 0000 12333 3333333333333 55444
Q ss_pred CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC
Q 035558 160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ 236 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 236 (253)
-.... .+. ..+++..|+.||++ +++|.-..+|.+.+....-.+... ............+.|.-++
T Consensus 207 ~~~~~----~i~-~~~~i~~iavSpng-~~iAl~t~~g~l~v~ssDf~~~~~------e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 207 ENSFK----QID-SDGPIIKIAVSPNG-KFIALFTDSGNLWVVSSDFSEKLC------EFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred ccccc----ccc-CCCCeEEEEECCCC-CEEEEEECCCCEEEEECcccceeE------EeecCcCCCCcEEEEECCC
Confidence 33211 122 24689999999999 699988899999888764433221 1111223455667776554
No 329
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.31 E-value=0.00064 Score=54.89 Aligned_cols=184 Identities=14% Similarity=0.010 Sum_probs=102.7
Q ss_pred CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeE-EEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558 5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTS-FDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI 82 (253)
Q Consensus 5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 82 (253)
+.+++.+.+ .+..+|..++ +.+...+... .+.+ -.. .+..++.++.++.|..+|.++++.+....
T Consensus 121 ~~v~v~~~~g~l~ald~~tG----~~~W~~~~~~------~~~ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDG----EVAWQTKVAG------EALSRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred CEEEEEcCCCEEEEEECCCC----CCcccccCCC------ceecCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 344444445 8999999887 5555444332 1111 111 24566777889999999999999877665
Q ss_pred cccccE-----EEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCC-CCC---eeEEEeeC-CCCCEEEEEEeCC
Q 035558 83 AHDKEV-----YDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEP-DTP---LVRLGWNK-QDPRYMATIIMDS 152 (253)
Q Consensus 83 ~~~~~v-----~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~---i~~~~~~~-~~~~~l~~~~~~~ 152 (253)
.....+ ..-.. .+..++.++.+|.+..+|..+++..-........ ... ...+.-+| -.+..+++++.++
T Consensus 188 ~~~~~~~~~~~~sP~v-~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g 266 (394)
T PRK11138 188 LDVPSLTLRGESAPAT-AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNG 266 (394)
T ss_pred CCCCcccccCCCCCEE-ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCC
Confidence 321110 00011 2345677788999999999887632211100000 000 00111111 0234566667777
Q ss_pred CeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCC
Q 035558 153 AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQ 209 (253)
Q Consensus 153 ~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 209 (253)
. +..+|..+++. +..... .....+.. .+ ..++.++.+|.+..+|..+++.
T Consensus 267 ~-l~ald~~tG~~-~W~~~~--~~~~~~~~--~~-~~vy~~~~~g~l~ald~~tG~~ 316 (394)
T PRK11138 267 N-LVALDLRSGQI-VWKREY--GSVNDFAV--DG-GRIYLVDQNDRVYALDTRGGVE 316 (394)
T ss_pred e-EEEEECCCCCE-EEeecC--CCccCcEE--EC-CEEEEEcCCCeEEEEECCCCcE
Confidence 7 99999988763 322221 11112222 24 3677788899999999988763
No 330
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.27 E-value=0.00021 Score=57.17 Aligned_cols=198 Identities=12% Similarity=0.111 Sum_probs=102.6
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee--c------ccccEEEEEec----C--C---CeEEEEeCC
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI--A------HDKEVYDIAWG----G--V---GVFASVSAD 105 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~------~~~~v~~~~~~----~--~---~~l~~~~~d 105 (253)
++|++++.+ +-.+++.|..+|.+.|.|++....+..-. . ....|+++.|. . + -.+++|...
T Consensus 87 g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 87 GPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp -SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred CcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 789999986 67799999999999999998877655422 2 23467888887 2 2 268888999
Q ss_pred CcEEEEEcCC-C-CCe--eeeeccCCCCCCeeEEE-eeCC--------------------CCCEEEEEEeCCCeEEEEEC
Q 035558 106 GSVRVFDLRD-K-EHS--TIIYESSEPDTPLVRLG-WNKQ--------------------DPRYMATIIMDSAKVVVLDI 160 (253)
Q Consensus 106 g~i~i~d~~~-~-~~~--~~~~~~~~~~~~i~~~~-~~~~--------------------~~~~l~~~~~~~~~i~~~d~ 160 (253)
|.+.+|.+.- . ... ........+.+++..+. ++.. ...++++++ +.. ++++..
T Consensus 165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~~-irv~~~ 242 (395)
T PF08596_consen 165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ESD-IRVFKP 242 (395)
T ss_dssp SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSE-EEEE-T
T ss_pred CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-ccc-eEEEeC
Confidence 9999998852 1 111 11111112334554443 3221 112444444 444 999998
Q ss_pred CCCCCCeeeecccccceeEEEEe-----cCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC
Q 035558 161 RFPTLPVVELQRHQASVNAIAWA-----PHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS 235 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 235 (253)
.+.+...+.+ ........+.+- ..+ ..|++-..+|.|++|.+...+...... .........+....++++
T Consensus 243 ~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~G~i~i~SLP~Lkei~~~~---l~~~~d~~~~~~ssis~~ 317 (395)
T PF08596_consen 243 PKSKGAHKSF-DDPFLCSSASVVPTISRNGG-YCLVCLFNNGSIRIYSLPSLKEIKSVS---LPPPLDSRRLSSSSISRN 317 (395)
T ss_dssp T---EEEEE--SS-EEEEEEEEEEEE-EEEE-EEEEEEETTSEEEEEETTT--EEEEEE----SS---HHHHTT-EE-TT
T ss_pred CCCcccceee-ccccccceEEEEeecccCCc-eEEEEEECCCcEEEEECCCchHhhccc---CCCccccccccccEECCC
Confidence 8766433333 222333444553 234 578888899999999999877443000 000112234456667888
Q ss_pred CCceEEEEcCCcEEE
Q 035558 236 QPDWVAIAFSTKLQI 250 (253)
Q Consensus 236 ~~~~~~~~~~~~i~v 250 (253)
|. ++.-.....+.+
T Consensus 318 Gd-i~~~~gpsE~~l 331 (395)
T PF08596_consen 318 GD-IFYWTGPSEIQL 331 (395)
T ss_dssp S--EEEE-SSSEEEE
T ss_pred CC-EEEEeCcccEEE
Confidence 86 443333334433
No 331
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.26 E-value=0.00048 Score=55.12 Aligned_cols=200 Identities=11% Similarity=0.069 Sum_probs=108.4
Q ss_pred CeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee-------------------------------------------eee
Q 035558 44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV-------------------------------------------DTQ 80 (253)
Q Consensus 44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-------------------------------------------~~~ 80 (253)
.|+.++|. ++..-|+.|...|.|-||.....+. ...
T Consensus 3 ~v~~vs~a-~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFA-PETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEE-TTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEec-CCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 58899999 6667788899999999886543210 011
Q ss_pred eecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeecc-----CCCCCCeeEEEeeC---C-CC---CEEEEE
Q 035558 81 LIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYES-----SEPDTPLVRLGWNK---Q-DP---RYMATI 148 (253)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~~~i~~~~~~~---~-~~---~~l~~~ 148 (253)
+....++|++++.++-.+++.|.++|.+.+.|+|.+..+...... ......++++.|.. . ++ -.+++|
T Consensus 82 ~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp E---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 122367899999988889999999999999999887633221111 12334678888862 1 22 356666
Q ss_pred EeCCCeEEEEECCC-C-CC----CeeeecccccceeEEE-EecCC--------------------CCeEEEecCCCcEEE
Q 035558 149 IMDSAKVVVLDIRF-P-TL----PVVELQRHQASVNAIA-WAPHS--------------------SCHICTAGDDSQALI 201 (253)
Q Consensus 149 ~~~~~~i~~~d~~~-~-~~----~~~~~~~~~~~i~~~~-~~~~~--------------------~~~l~~~~~dg~i~i 201 (253)
...|. +.+|.+-- . .. .......+.++|..+. ++.+. +.++++++ +..+++
T Consensus 162 Tn~G~-v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~~irv 239 (395)
T PF08596_consen 162 TNSGN-VLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ESDIRV 239 (395)
T ss_dssp ETTSE-EEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEE
T ss_pred eCCCC-EEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-ccceEE
Confidence 66666 98887742 1 11 1111123445555554 32210 12444444 678999
Q ss_pred EeccCCCCCCCCCCCCeeeccCCCceeEEEEc-----CCCCceEEEEcCCcEEEEEC
Q 035558 202 WDLSSMGQPVEGGLDPILAYTAGAEIEQLQWS-----SSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 202 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~i~vw~l 253 (253)
+...+.+... ..+........+.+- ..+..|++...+|.++++.|
T Consensus 240 ~~~~~~k~~~-------K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL 289 (395)
T PF08596_consen 240 FKPPKSKGAH-------KSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL 289 (395)
T ss_dssp E-TT---EEE-------EE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred EeCCCCcccc-------eeeccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence 9888765432 223222233344442 24556778889999999864
No 332
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.18 E-value=0.00046 Score=57.43 Aligned_cols=181 Identities=13% Similarity=0.019 Sum_probs=103.7
Q ss_pred CCCCceEEeecC---cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCC----eEEEEeccC
Q 035558 2 CQKPDLLATSSD---FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT----TCTIWDIER 74 (253)
Q Consensus 2 p~~~~~l~~~~~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~vwd~~~ 74 (253)
|++|..+...++ .+.+.|.++. +....+.--. ....+.++ +++.++++.+.+. ++..-+..+
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etm----eV~~qV~Vdg------npd~v~~s-pdGk~afvTsyNsE~G~tl~em~a~e 269 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETM----EVAWQVMVDG------NLDNVDTD-YDGKYAFSTCYNSEEGVTLAEMMAAE 269 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccc----eEEEEEEeCC------CcccceEC-CCCCEEEEeccCcccCcceeeecccc
Confidence 345555544443 6777777764 4444443322 23456777 6788887775321 222222222
Q ss_pred ceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCC-----CCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558 75 EAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRD-----KEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI 148 (253)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 148 (253)
......+.- ..+. ++. ++++... .++.|.+.|.++ .+....+... .....+.++| ++++++++
T Consensus 270 ~d~~vvfni--~~ie--a~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVG----KsPHGV~vSP-DGkylyVa 338 (635)
T PRK02888 270 RDWVVVFNI--ARIE--EAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVP----KNPHGVNTSP-DGKYFIAN 338 (635)
T ss_pred CceEEEEch--HHHH--HhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECC----CCccceEECC-CCCEEEEe
Confidence 111111110 0000 222 4555444 367899999988 2222222221 2567799999 89988888
Q ss_pred EeCCCeEEEEECCCCCCC-----------eeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccC
Q 035558 149 IMDSAKVVVLDIRFPTLP-----------VVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSS 206 (253)
Q Consensus 149 ~~~~~~i~~~d~~~~~~~-----------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 206 (253)
+.-...+.++|+.+.+.. +.+..- .......+|.++| +...+..-|..|..|++..
T Consensus 339 nklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 339 GKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence 775555999999875421 122222 2233457899998 5788888999999999986
No 333
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.17 E-value=0.00023 Score=60.43 Aligned_cols=70 Identities=16% Similarity=0.260 Sum_probs=61.6
Q ss_pred CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcC
Q 035558 44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLR 114 (253)
Q Consensus 44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~ 114 (253)
.+++++|+ |..-.|+.|-.-|.+.+|...+.+.-.....|+.+|..+.|+ +|..++++..-|.+.+|...
T Consensus 61 hatSLCWH-pe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 61 HATSLCWH-PEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ehhhhccC-hHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 35689999 777888999889999999998777666666899999999999 99999999999999999876
No 334
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.15 E-value=2.5e-05 Score=64.28 Aligned_cols=119 Identities=8% Similarity=0.047 Sum_probs=83.5
Q ss_pred CeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCC
Q 035558 131 PLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQP 210 (253)
Q Consensus 131 ~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 210 (253)
.+.--+++. ++.+++.|+..|. +++|+-..+........+-.+.+.....+++. .++|.|+..|.|.++.+.....+
T Consensus 35 ~v~lTc~ds-t~~~l~~GsS~G~-lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 35 RVKLTCVDA-TEEYLAMGSSAGS-VYLYNRHTGEMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred eEEEEEeec-CCceEEEecccce-EEEEecCchhhhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccCCC
Confidence 344444555 7899999999998 99999776543233333344556667788887 68889999999999998874332
Q ss_pred CCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 211 VEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 211 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
......+ .-..|...|++++|++++..+++|...|.|..-+|
T Consensus 112 ~~~~~t~-~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L 153 (726)
T KOG3621|consen 112 DLDYVTP-CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTEL 153 (726)
T ss_pred cceeecc-ccccCCceEEEEEecccccEEeecCCCceEEEEEe
Confidence 2100001 11237889999999999999999999998876543
No 335
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.15 E-value=0.00016 Score=62.08 Aligned_cols=146 Identities=16% Similarity=0.056 Sum_probs=99.7
Q ss_pred CCCEEEEE-eCCCeEEEEeccCceeeeeeeccccc-EEEEEec------CCCeEEEEeCCCcEEEEEcCCCCCeeee--e
Q 035558 54 EPRRIGTS-SIDTTCTIWDIEREAVDTQLIAHDKE-VYDIAWG------GVGVFASVSADGSVRVFDLRDKEHSTII--Y 123 (253)
Q Consensus 54 ~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~------~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~ 123 (253)
+.++|+.- .....|+-.|++.|+.+..+..+... |.+++-. .+..-+.|-.+..+..||.|-....... .
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 44454443 34578999999999999999877644 6666432 2445667777888999999975421111 1
Q ss_pred ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEe
Q 035558 124 ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWD 203 (253)
Q Consensus 124 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd 203 (253)
..-.......|++-+ ...+||+|+.+|. |++||- .+......+.+-..+|..|..+.|| +++++.+ +..+.+++
T Consensus 572 k~Y~~~~~Fs~~aTt--~~G~iavgs~~G~-IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DG-kwilaTc-~tyLlLi~ 645 (794)
T PF08553_consen 572 KQYSSKNNFSCFATT--EDGYIAVGSNKGD-IRLYDR-LGKRAKTALPGLGDPIIGIDVTADG-KWILATC-KTYLLLID 645 (794)
T ss_pred cccccCCCceEEEec--CCceEEEEeCCCc-EEeecc-cchhhhhcCCCCCCCeeEEEecCCC-cEEEEee-cceEEEEE
Confidence 111223356666655 5678999999999 999994 3344455667778899999999999 4655444 56777887
Q ss_pred cc
Q 035558 204 LS 205 (253)
Q Consensus 204 ~~ 205 (253)
..
T Consensus 646 t~ 647 (794)
T PF08553_consen 646 TL 647 (794)
T ss_pred Ee
Confidence 63
No 336
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=2e-05 Score=64.11 Aligned_cols=93 Identities=15% Similarity=0.350 Sum_probs=74.6
Q ss_pred CeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccccccee-EEEEecCCCCeEEEecCCCcEEEEeccCCCC
Q 035558 131 PLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVN-AIAWAPHSSCHICTAGDDSQALIWDLSSMGQ 209 (253)
Q Consensus 131 ~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 209 (253)
.+..+.|+| .-.+||.+..+|. +.+..+.. + .+..+..+...++ +++|.||| ++|+.|-.||+|++.|++++..
T Consensus 22 ~i~~~ewnP-~~dLiA~~t~~ge-lli~R~n~-q-Rlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 22 NIKRIEWNP-KMDLIATRTEKGE-LLIHRLNW-Q-RLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ceEEEEEcC-ccchhheeccCCc-EEEEEecc-c-eeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEccCCCc
Confidence 678899999 8899999999998 88888773 3 3777776777777 99999999 7999999999999999999875
Q ss_pred CCCCCCCCeeeccCCCceeEEEEcC
Q 035558 210 PVEGGLDPILAYTAGAEIEQLQWSS 234 (253)
Q Consensus 210 ~~~~~~~~~~~~~~~~~v~~~~~~~ 234 (253)
.. .....-...|.++-|.|
T Consensus 97 l~------~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LV------SFLFSVETDISKGIWDR 115 (665)
T ss_pred ee------ccccccccchheeeccc
Confidence 43 12334456777777764
No 337
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.10 E-value=6.4e-06 Score=69.62 Aligned_cols=152 Identities=12% Similarity=0.057 Sum_probs=104.6
Q ss_pred eeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC-e
Q 035558 77 VDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA-K 154 (253)
Q Consensus 77 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~-~ 154 (253)
....++.|+...++++|+ +.++|+.|+..|.|+++++.++.. ......|...|+.+.=+. ++..+++.+.... .
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~---e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM---EESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPL 1168 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc---cccccccccccccccccC-CcceeeeeccccCch
Confidence 445667788899999999 999999999999999999999873 233356777888888877 6666666554443 4
Q ss_pred EEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcC
Q 035558 155 VVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS 234 (253)
Q Consensus 155 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 234 (253)
..+|++.....+.+.+.. -.++.|+... +.-+.|..-....+||+++....... .....+....=+...|+|
T Consensus 1169 saLW~~~s~~~~~Hsf~e----d~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~ty---lt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFDE----DKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTY---LTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred HHHhccccccCccccccc----cceeehhhhH-HHHHhcccccceEEEecccCcHHHHh---cCcchhhhhhccccccCC
Confidence 679999876566666654 3467888765 45556666677899999998744300 000111122225667888
Q ss_pred CCCceE
Q 035558 235 SQPDWV 240 (253)
Q Consensus 235 ~~~~~~ 240 (253)
+...++
T Consensus 1241 ~D~LIl 1246 (1516)
T KOG1832|consen 1241 CDTLIL 1246 (1516)
T ss_pred CcceEe
Confidence 876443
No 338
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.09 E-value=0.00086 Score=52.54 Aligned_cols=174 Identities=10% Similarity=0.081 Sum_probs=103.1
Q ss_pred CeEEEEeccCceeeeeee-cccccEEEEEec----C----CCeEEEEeC----------CCcEEEEEcCCC----CCeee
Q 035558 65 TTCTIWDIEREAVDTQLI-AHDKEVYDIAWG----G----VGVFASVSA----------DGSVRVFDLRDK----EHSTI 121 (253)
Q Consensus 65 g~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~----~----~~~l~~~~~----------dg~i~i~d~~~~----~~~~~ 121 (253)
..|++.|..+.+.+..+. .....+.+++.. + ..+++.|.. .|.|.++++... .....
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 357888888777665554 123344444433 2 356776643 288999999984 23333
Q ss_pred eeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccccc--ceeEEEEecCCCCeEEEecCCCcE
Q 035558 122 IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQA--SVNAIAWAPHSSCHICTAGDDSQA 199 (253)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~dg~i 199 (253)
+... ..+++|++++-- .+. ++++. .+. |.+|++...+. +.....+.. .+.++... + .+++.|.....+
T Consensus 82 i~~~-~~~g~V~ai~~~--~~~-lv~~~-g~~-l~v~~l~~~~~-l~~~~~~~~~~~i~sl~~~--~-~~I~vgD~~~sv 151 (321)
T PF03178_consen 82 IHST-EVKGPVTAICSF--NGR-LVVAV-GNK-LYVYDLDNSKT-LLKKAFYDSPFYITSLSVF--K-NYILVGDAMKSV 151 (321)
T ss_dssp EEEE-EESS-EEEEEEE--TTE-EEEEE-TTE-EEEEEEETTSS-EEEEEEE-BSSSEEEEEEE--T-TEEEEEESSSSE
T ss_pred EEEE-eecCcceEhhhh--CCE-EEEee-cCE-EEEEEccCccc-chhhheecceEEEEEEecc--c-cEEEEEEcccCE
Confidence 3332 235588888765 344 44433 344 99999987662 333333333 45555444 5 489999988889
Q ss_pred EEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 200 LIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 200 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
.++......... ...........++++.+-+++..++++..++.+.+++
T Consensus 152 ~~~~~~~~~~~l----~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~ 200 (321)
T PF03178_consen 152 SLLRYDEENNKL----ILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLR 200 (321)
T ss_dssp EEEEEETTTE-E----EEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEE
T ss_pred EEEEEEccCCEE----EEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEE
Confidence 988666532211 0112222456788999986666788999999998876
No 339
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=3.4e-05 Score=62.82 Aligned_cols=93 Identities=15% Similarity=0.224 Sum_probs=75.7
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEE-EEEec-CCCeEEEEeCCCcEEEEEcCCCCCee
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVY-DIAWG-GVGVFASVSADGSVRVFDLRDKEHST 120 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~ 120 (253)
..|.-+.|+ |.-.++|.+..+|.|.+..+. -+.+.++..+..+++ +++|. +|+.++.|-.||+|++.|+.++....
T Consensus 21 ~~i~~~ewn-P~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWN-PKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEc-CccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 457789999 889999999999999999988 666777876777777 99999 99999999999999999999987433
Q ss_pred eeeccCCCCCCeeEEEeeC
Q 035558 121 IIYESSEPDTPLVRLGWNK 139 (253)
Q Consensus 121 ~~~~~~~~~~~i~~~~~~~ 139 (253)
.. ....+..|.++-|.+
T Consensus 99 ~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SF--LFSVETDISKGIWDR 115 (665)
T ss_pred cc--ccccccchheeeccc
Confidence 21 223344777888864
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.06 E-value=0.0028 Score=51.56 Aligned_cols=209 Identities=14% Similarity=0.190 Sum_probs=105.9
Q ss_pred CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
|++++++.+++ .-.|+..... +.... +.-....|. . .+.+|+-..++.|.++.--..+....+
T Consensus 42 pngr~v~V~g~geY~iyt~~~~----r~k~~----------G~g~~~vw~-~-~n~yAv~~~~~~I~I~kn~~~~~~k~i 105 (443)
T PF04053_consen 42 PNGRFVLVCGDGEYEIYTALAW----RNKAF----------GSGLSFVWS-S-RNRYAVLESSSTIKIYKNFKNEVVKSI 105 (443)
T ss_dssp TTSSEEEEEETTEEEEEETTTT----EEEEE----------EE-SEEEE--T-SSEEEEE-TTS-EEEEETTEE-TT---
T ss_pred CCCCEEEEEcCCEEEEEEccCC----ccccc----------CceeEEEEe-c-CccEEEEECCCeEEEEEcCccccceEE
Confidence 46777777776 7777764331 22221 233478888 5 555777777888999632223322233
Q ss_pred ecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558 82 IAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR 161 (253)
Q Consensus 82 ~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~ 161 (253)
+. ...+..+- .|.+|+..+.+ .|.+||+.+++....+ ... +|..+.|++ ++++++..+.+. +.+++..
T Consensus 106 ~~-~~~~~~If--~G~LL~~~~~~-~i~~yDw~~~~~i~~i---~v~--~vk~V~Ws~-~g~~val~t~~~--i~il~~~ 173 (443)
T PF04053_consen 106 KL-PFSVEKIF--GGNLLGVKSSD-FICFYDWETGKLIRRI---DVS--AVKYVIWSD-DGELVALVTKDS--IYILKYN 173 (443)
T ss_dssp ---SS-EEEEE---SSSEEEEETT-EEEEE-TTT--EEEEE---SS---E-EEEEE-T-TSSEEEEE-S-S--EEEEEE-
T ss_pred cC-CcccceEE--cCcEEEEECCC-CEEEEEhhHcceeeEE---ecC--CCcEEEEEC-CCCEEEEEeCCe--EEEEEec
Confidence 31 11233332 37777776655 8999999999744444 221 478999999 899999887665 6666543
Q ss_pred CC---------C-CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEE
Q 035558 162 FP---------T-LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQ 231 (253)
Q Consensus 162 ~~---------~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 231 (253)
.. - .....+..-...|.+.+|..+ -++.|... .++- +-.+... ....-..++.=+.
T Consensus 174 ~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~--~lkY--l~~Ge~~--------~i~~ld~~~yllg 239 (443)
T PF04053_consen 174 LEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN--HLKY--LVNGETG--------IIAHLDKPLYLLG 239 (443)
T ss_dssp HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT--EEEE--EETTEEE--------EEEE-SS--EEEE
T ss_pred chhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC--eEEE--EEcCCcc--------eEEEcCCceEEEE
Confidence 22 0 013333333567889999876 25666543 6665 4444321 2222255666677
Q ss_pred EcCCCCceEEEEcCCcEEEEEC
Q 035558 232 WSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 232 ~~~~~~~~~~~~~~~~i~vw~l 253 (253)
..|....+.....+..+..+.+
T Consensus 240 y~~~~~~ly~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 240 YLPKENRLYLIDRDGNVISYEL 261 (443)
T ss_dssp EETTTTEEEEE-TT--EEEEE-
T ss_pred EEccCCEEEEEECCCCEEEEEE
Confidence 7776667778888877776653
No 341
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.05 E-value=0.001 Score=53.82 Aligned_cols=156 Identities=16% Similarity=0.181 Sum_probs=90.3
Q ss_pred CCeeEEEecCCCCCEEEEE---eCC-CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEE-eCCCc--EEEEEcC
Q 035558 43 GPLTSFDWNEAEPRRIGTS---SID-TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASV-SADGS--VRVFDLR 114 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~---~~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~-~~dg~--i~i~d~~ 114 (253)
..+..-+|+ +++..++-. ... ..+.++++++++....+. ..+.-..-+|+ +++.|+.+ ..||. |.+.|+.
T Consensus 193 ~~~~~p~ws-~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 193 SLILTPAWS-PDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred cceeccccC-cCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 456667788 666654433 222 469999999887544443 23333446888 77766654 45665 5566777
Q ss_pred CCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC--eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEE
Q 035558 115 DKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA--KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICT 192 (253)
Q Consensus 115 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 192 (253)
+....+ +....+ .-..=.|+| +|+.++..+..++ .|.++|..... ...+......-..-.|+|+|. +++.
T Consensus 271 ~~~~~~-Lt~~~g---i~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~--~~riT~~~~~~~~p~~SpdG~-~i~~ 342 (425)
T COG0823 271 GKNLPR-LTNGFG---INTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQ--VTRLTFSGGGNSNPVWSPDGD-KIVF 342 (425)
T ss_pred CCccee-cccCCc---cccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCc--eeEeeccCCCCcCccCCCCCC-EEEE
Confidence 666332 222222 223557899 8888887766554 35666666544 233333333333678999995 5554
Q ss_pred ec-CCCc--EEEEeccCCC
Q 035558 193 AG-DDSQ--ALIWDLSSMG 208 (253)
Q Consensus 193 ~~-~dg~--i~iwd~~~~~ 208 (253)
.+ .+|. |.+.|+.+..
T Consensus 343 ~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 343 ESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred EeccCCceeeEEeccCCCC
Confidence 44 3455 5556555544
No 342
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.05 E-value=0.0003 Score=60.41 Aligned_cols=139 Identities=12% Similarity=0.076 Sum_probs=87.5
Q ss_pred CCCeEEEE-eCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEe----eCCCCCEEEEEEeCCCeEEEEECCCCCCCeee
Q 035558 95 GVGVFASV-SADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGW----NKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE 169 (253)
Q Consensus 95 ~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~ 169 (253)
+.++|+.- .....|+-.|++.++.+....... ..+|..++= ...++.....|-.++. +..||.|-....+..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~--~~~v~~~~p~~K~aqlt~e~tflGls~n~-lfriDpR~~~~k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHD--DIPVVDIAPDSKFAQLTNEQTFLGLSDNS-LFRIDPRLSGNKLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCC--CcceeEecccccccccCCCceEEEECCCc-eEEeccCCCCCceee
Confidence 44444443 456789999999988443332211 123444432 1112334455555666 999999975432222
Q ss_pred ecc----cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcC
Q 035558 170 LQR----HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFS 245 (253)
Q Consensus 170 ~~~----~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 245 (253)
-.. ......|++-..+| +||+|+.+|.||+||--. .... ..+.+-+.+|..|..+.+|+++++.+..
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g-~~AK------T~lp~lG~pI~~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLG-KRAK------TALPGLGDPIIGIDVTADGKWILATCKT 639 (794)
T ss_pred ccccccccCCCceEEEecCCc--eEEEEeCCCcEEeecccc-hhhh------hcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence 111 23457788888887 899999999999999433 2221 3455678999999999999977766644
No 343
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.04 E-value=0.0009 Score=42.69 Aligned_cols=100 Identities=13% Similarity=0.200 Sum_probs=66.0
Q ss_pred eeEEEecCCC---CCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeee
Q 035558 45 LTSFDWNEAE---PRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTI 121 (253)
Q Consensus 45 v~~~~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 121 (253)
|+++++...+ .+.|++|+.|..|++|+-+ +.+..+. ..+.|+++.-.....|+.+..+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R----- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRSQR----- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCcce-----
Confidence 5666665433 3689999999999999864 4565565 356788888775688999999999999976432
Q ss_pred eeccCCCCCCeeEEEeeCCCC---CEEEEEEeCCC
Q 035558 122 IYESSEPDTPLVRLGWNKQDP---RYMATIIMDSA 153 (253)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~~~~ 153 (253)
+...... ..+.++++..-++ ..|++|=.+|.
T Consensus 74 lWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGk 107 (111)
T PF14783_consen 74 LWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGK 107 (111)
T ss_pred eeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCe
Confidence 2221122 2466666543222 35677666665
No 344
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.97 E-value=0.0042 Score=51.94 Aligned_cols=109 Identities=10% Similarity=0.153 Sum_probs=71.9
Q ss_pred CCCEEEEEEeCCCeEEEEECCC----CCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCC
Q 035558 141 DPRYMATIIMDSAKVVVLDIRF----PTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLD 216 (253)
Q Consensus 141 ~~~~l~~~~~~~~~i~~~d~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 216 (253)
++++...+ ++. |.+.|.++ ... +...-.-......++++|||..+++++..+.++.|.|+.+.+........
T Consensus 287 dGK~~~V~--gn~-V~VID~~t~~~~~~~-v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 287 AGKFKTIG--GSK-VPVVDGRKAANAGSA-LTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred CCCEEEEC--CCE-EEEEECCccccCCcc-eEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 56665552 344 99999987 232 33333345567899999999544456667999999999987643211111
Q ss_pred Ce----eeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 217 PI----LAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 217 ~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
+. ....-+......+|.++|..+.+.-.|+.+..|++
T Consensus 363 ~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~ 403 (635)
T PRK02888 363 PRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNI 403 (635)
T ss_pred ccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEeh
Confidence 11 11122445567889999887778888999999985
No 345
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.94 E-value=0.0071 Score=49.04 Aligned_cols=167 Identities=14% Similarity=0.133 Sum_probs=85.5
Q ss_pred eEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCe-----eEEEeeCC
Q 035558 66 TCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPL-----VRLGWNKQ 140 (253)
Q Consensus 66 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i-----~~~~~~~~ 140 (253)
.|++|+.. |+.+..+.-..+.|.++.|.+...|+....||.++++|+.... ............| ....+..
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~--~fsl~~~i~~~~v~e~~i~~~~~~~- 137 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF--QFSLGEEIEEEKVLECRIFAIWFYK- 137 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce--eechhhhccccCcccccccccccCC-
Confidence 58999886 5556665533489999999955667777899999999997443 1111111111122 2222222
Q ss_pred CCCEEEEEEeCCCeEEEEECCCCCCCeeee---cc-----ccc-ceeE-EEEecCCCCeEEEecCCCcEEEEeccCCCCC
Q 035558 141 DPRYMATIIMDSAKVVVLDIRFPTLPVVEL---QR-----HQA-SVNA-IAWAPHSSCHICTAGDDSQALIWDLSSMGQP 210 (253)
Q Consensus 141 ~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~---~~-----~~~-~i~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 210 (253)
+| ++.-..++. +.+..--........+ .. +.. .... ..++.+. ...+....++.+.+.+-...+.
T Consensus 138 ~G--ivvLt~~~~-~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~~~- 212 (410)
T PF04841_consen 138 NG--IVVLTGNNR-FYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENSFKQ- 212 (410)
T ss_pred CC--EEEECCCCe-EEEEeCccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEcccccc-
Confidence 33 222233443 4333221111001111 10 000 0111 2234444 2444444555565444332210
Q ss_pred CCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEE
Q 035558 211 VEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQIL 251 (253)
Q Consensus 211 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw 251 (253)
....+++..++.||+++.++....++.+.+.
T Consensus 213 ----------i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ 243 (410)
T PF04841_consen 213 ----------IDSDGPIIKIAVSPNGKFIALFTDSGNLWVV 243 (410)
T ss_pred ----------ccCCCCeEEEEECCCCCEEEEEECCCCEEEE
Confidence 1234689999999999977767777777664
No 346
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.88 E-value=0.0052 Score=45.90 Aligned_cols=186 Identities=11% Similarity=0.137 Sum_probs=98.0
Q ss_pred CCCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---
Q 035558 2 CQKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA--- 76 (253)
Q Consensus 2 p~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--- 76 (253)
|+++.++++..+ .|.-++.+. +.++.+.-..- +..-.|++. .++.++++--.++.+.++++....
T Consensus 31 pd~~tLfaV~d~~~~i~els~~G-----~vlr~i~l~g~----~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 31 PDTGTLFAVQDEPGEIYELSLDG-----KVLRRIPLDGF----GDYEGITYL-GNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp TTTTEEEEEETTTTEEEEEETT-------EEEEEE-SS-----SSEEEEEE--STTEEEEEETTTTEEEEEEE----TT-
T ss_pred CCCCeEEEEECCCCEEEEEcCCC-----CEEEEEeCCCC----CCceeEEEE-CCCEEEEEEcCCCcEEEEEEecccccc
Confidence 666777777775 776667653 44444432221 346688887 666666655568999999884321
Q ss_pred ---eeeeee-----cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCC---CCCeeeeec-----cCCCCCCeeEEEeeC
Q 035558 77 ---VDTQLI-----AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRD---KEHSTIIYE-----SSEPDTPLVRLGWNK 139 (253)
Q Consensus 77 ---~~~~~~-----~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~-----~~~~~~~i~~~~~~~ 139 (253)
....+. .++..+-.++|. .++.|+.+-+.....++.++. ......... .......+..++++|
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p 180 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDP 180 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEET
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcC
Confidence 112221 244568899999 666666777777777887765 211111110 112233678899999
Q ss_pred CCCCEEEEEEeCCCeEEEEECCCCCCCeee--ecc--c-----ccceeEEEEecCCCCeEEEecCCCcEEEE
Q 035558 140 QDPRYMATIIMDSAKVVVLDIRFPTLPVVE--LQR--H-----QASVNAIAWAPHSSCHICTAGDDSQALIW 202 (253)
Q Consensus 140 ~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~--~~~--~-----~~~i~~~~~~~~~~~~l~~~~~dg~i~iw 202 (253)
.++.+++.+..+.. |..+|.. ++ ++.. +.. | -...-.|+|.++| .|+..++-+..++|
T Consensus 181 ~t~~lliLS~es~~-l~~~d~~-G~-~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G--~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 181 RTGHLLILSDESRL-LLELDRQ-GR-VVSSLSLDRGFHGLSKDIPQPEGIAFDPDG--NLYIVSEPNLFYRF 247 (248)
T ss_dssp TTTEEEEEETTTTE-EEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT----EEEEETTTEEEEE
T ss_pred CCCeEEEEECCCCe-EEEECCC-CC-EEEEEEeCCcccCcccccCCccEEEECCCC--CEEEEcCCceEEEe
Confidence 76777766555555 8888844 33 2332 222 1 1246789999998 45555666655554
No 347
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.87 E-value=5.5e-05 Score=38.03 Aligned_cols=38 Identities=34% Similarity=0.662 Sum_probs=32.1
Q ss_pred ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEe
Q 035558 28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWD 71 (253)
Q Consensus 28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 71 (253)
++...+..|. ..|.++.|+ +++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~-----~~i~~~~~~-~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHT-----GPVTSVAFS-PDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecC-----CceeEEEEC-CCCCEEEEecCCCeEEEcC
Confidence 4456667777 789999999 6778999999999999996
No 348
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.86 E-value=6.3e-05 Score=37.80 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=32.1
Q ss_pred eeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEE
Q 035558 76 AVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFD 112 (253)
Q Consensus 76 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d 112 (253)
+....+..|...|.++.|+ .+..+++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4456667788999999999 789999999999999996
No 349
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.82 E-value=0.0074 Score=48.13 Aligned_cols=233 Identities=12% Similarity=0.054 Sum_probs=100.4
Q ss_pred CCceEEeec-C--cEEEEEccCCccccceeeeecC---CCCccccCCeeEEEecCCCCCEEEEEeC------CCeEEEEe
Q 035558 4 KPDLLATSS-D--FLRVWRISDEDRRVELKSLLNG---NKNSEYCGPLTSFDWNEAEPRRIGTSSI------DTTCTIWD 71 (253)
Q Consensus 4 ~~~~l~~~~-~--~v~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~vwd 71 (253)
+.++|+..+ + .|.|.|+.+....+++.++++. +..... ..-..+-.- ++++.++++-. -|-+.+.|
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~-s~PHT~Hcl-p~G~imIS~lGd~~G~g~Ggf~llD 163 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGL-SRPHTVHCL-PDGRIMISALGDADGNGPGGFVLLD 163 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-E-EEEEEEEE--SS--EEEEEEEETTS-S--EEEEE-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCC-CCCceeeec-CCccEEEEeccCCCCCCCCcEEEEc
Confidence 345666655 4 9999999865455566666654 111111 111122222 67888887632 23577788
Q ss_pred ccCceeeeeeecc---cccEEEEEec-CCCeEEEEe--------------------CCCcEEEEEcCCCCCeeeeeccCC
Q 035558 72 IEREAVDTQLIAH---DKEVYDIAWG-GVGVFASVS--------------------ADGSVRVFDLRDKEHSTIIYESSE 127 (253)
Q Consensus 72 ~~~~~~~~~~~~~---~~~v~~~~~~-~~~~l~~~~--------------------~dg~i~i~d~~~~~~~~~~~~~~~ 127 (253)
-++.+........ ...-.++-|. ..+.++|.. ...++.+||+.+.+..+.+.....
T Consensus 164 ~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 164 GETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred CccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 8777666555432 1223455555 556666553 246799999999886666554332
Q ss_pred CCCCeeEEEee--CCCCCEEEEEE-eCCCeEEEEEC-CCCC---CCeeeecc-----------------cccceeEEEEe
Q 035558 128 PDTPLVRLGWN--KQDPRYMATII-MDSAKVVVLDI-RFPT---LPVVELQR-----------------HQASVNAIAWA 183 (253)
Q Consensus 128 ~~~~i~~~~~~--~~~~~~l~~~~-~~~~~i~~~d~-~~~~---~~~~~~~~-----------------~~~~i~~~~~~ 183 (253)
+ .....+.|. | +..+=.+++ -..+ |..|-- ..+. +.+..+.. -..-|+.+..|
T Consensus 244 g-~~pLEvRflH~P-~~~~gFvg~aLss~-i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS 320 (461)
T PF05694_consen 244 G-QMPLEVRFLHDP-DANYGFVGCALSSS-IWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS 320 (461)
T ss_dssp E-EEEEEEEE-SST-T--EEEEEEE--EE-EEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred C-CceEEEEecCCC-CccceEEEEeccce-EEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence 1 134556654 4 334433333 3333 544433 3221 11222211 13457899999
Q ss_pred cCCCCeEE-EecCCCcEEEEeccCCCCCCCCCCC-----------C-eeeccCCCceeEEEEcCCCCceEEE
Q 035558 184 PHSSCHIC-TAGDDSQALIWDLSSMGQPVEGGLD-----------P-ILAYTAGAEIEQLQWSSSQPDWVAI 242 (253)
Q Consensus 184 ~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~-----------~-~~~~~~~~~v~~~~~~~~~~~~~~~ 242 (253)
.|. ++|. ++-.+|.|+.||+.....|....+. + ..-..-.+...-++.|.||+++...
T Consensus 321 lDD-rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 321 LDD-RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp TTS--EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred cCC-CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 998 6665 4557999999999998876511100 0 0000112344677888888876643
No 350
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.82 E-value=0.01 Score=47.22 Aligned_cols=208 Identities=15% Similarity=0.175 Sum_probs=108.9
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee-c-------c-
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI-A-------H- 84 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~-------~- 84 (253)
.+.++|+.++ +....... . ..+....|+ |+++.++-.. ++.|.+++..+++..+.-. + -
T Consensus 24 ~y~i~d~~~~----~~~~l~~~-~-----~~~~~~~~s-P~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~ 91 (353)
T PF00930_consen 24 DYYIYDIETG----EITPLTPP-P-----PKLQDAKWS-PDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVP 91 (353)
T ss_dssp EEEEEETTTT----EEEESS-E-E-----TTBSEEEE--SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB-
T ss_pred eEEEEecCCC----ceEECcCC-c-----cccccceee-cCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCcc
Confidence 7888999884 33322222 3 578899999 8899988875 6789999987765332111 1 0
Q ss_pred --------cccEEEEEec-CCCeEEEEeCC-Cc-----------------------------------EEEEEcCCCCCe
Q 035558 85 --------DKEVYDIAWG-GVGVFASVSAD-GS-----------------------------------VRVFDLRDKEHS 119 (253)
Q Consensus 85 --------~~~v~~~~~~-~~~~l~~~~~d-g~-----------------------------------i~i~d~~~~~~~ 119 (253)
-+.-..+-|+ ++++|+....| .. +.++|+.+++..
T Consensus 92 dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~ 171 (353)
T PF00930_consen 92 DWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT 171 (353)
T ss_dssp -HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC
T ss_pred ceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE
Confidence 0122456788 77777665432 11 223344333321
Q ss_pred eeeec--cCCCCCCeeEEEeeCCCCC-EEEEE-EeCCC--eEEEEECCCCCCCeeeecccccc---eeEEEEe-cCCCCe
Q 035558 120 TIIYE--SSEPDTPLVRLGWNKQDPR-YMATI-IMDSA--KVVVLDIRFPTLPVVELQRHQAS---VNAIAWA-PHSSCH 189 (253)
Q Consensus 120 ~~~~~--~~~~~~~i~~~~~~~~~~~-~l~~~-~~~~~--~i~~~d~~~~~~~~~~~~~~~~~---i~~~~~~-~~~~~~ 189 (253)
..... ......-+..+.|.+ ++. +++.- ..+.. .+.++|..++...+......... -....|. +++..+
T Consensus 172 ~~~~~~~~~~~~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~ 250 (353)
T PF00930_consen 172 ELDPPNSLNPQDYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEF 250 (353)
T ss_dssp EE---HHHHTSSEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEE
T ss_pred EeeeccccCCCccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEE
Confidence 11111 012233677888988 666 33332 23332 35667776644322221112222 2345554 776567
Q ss_pred EEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeE-EEEcCCCCceE
Q 035558 190 ICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQ-LQWSSSQPDWV 240 (253)
Q Consensus 190 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~ 240 (253)
|.....||.-+||-+....... ..+....-.|.. +.|+++++.+.
T Consensus 251 l~~s~~~G~~hly~~~~~~~~~------~~lT~G~~~V~~i~~~d~~~~~iy 296 (353)
T PF00930_consen 251 LWISERDGYRHLYLYDLDGGKP------RQLTSGDWEVTSILGWDEDNNRIY 296 (353)
T ss_dssp EEEEETTSSEEEEEEETTSSEE------EESS-SSS-EEEEEEEECTSSEEE
T ss_pred EEEEEcCCCcEEEEEcccccce------eccccCceeecccceEcCCCCEEE
Confidence 7777788877777666544321 233444455644 66777766554
No 351
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.81 E-value=0.0067 Score=44.78 Aligned_cols=63 Identities=11% Similarity=-0.007 Sum_probs=50.0
Q ss_pred CCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEE-ec-CCCeEEEEeCCCcEEEEEcCCCCC
Q 035558 55 PRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIA-WG-GVGVFASVSADGSVRVFDLRDKEH 118 (253)
Q Consensus 55 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~i~d~~~~~~ 118 (253)
+++++.|...|.+++.+.++++....+... +.|.+-+ .. ++.++..++.|+..+..|.++...
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~c 127 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGC 127 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEecccccce
Confidence 678999999999999999999877777632 3333222 23 889999999999999999988753
No 352
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.77 E-value=4.6e-05 Score=54.57 Aligned_cols=141 Identities=15% Similarity=0.045 Sum_probs=78.4
Q ss_pred eEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccce
Q 035558 98 VFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASV 177 (253)
Q Consensus 98 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i 177 (253)
.+..-+.||.|+-++++..+.... ... .+.+..-.+..+.-+++|+.++. |.+|..............-...|
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~r--se~----~~~e~~~v~~~~~~~~vG~~dg~-v~~~n~n~~g~~~d~~~s~~e~i 104 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCR--SER----FIDEGQRVVTASAKLMVGTSDGA-VYVFNWNLEGAHSDRVCSGEESI 104 (238)
T ss_pred hhccccCCcccccchhhhhhhhhh--hhh----hhhcceeecccCceEEeecccce-EEEecCCccchHHHhhhcccccc
Confidence 444557789998888876542111 000 11111112225667888999998 99998763322111111122233
Q ss_pred eEEE-EecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCC-CceeEEEEcCCCCceEEE--EcCCcEEEEEC
Q 035558 178 NAIA-WAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAG-AEIEQLQWSSSQPDWVAI--AFSTKLQILRV 253 (253)
Q Consensus 178 ~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~--~~~~~i~vw~l 253 (253)
.++- -..++ .+..+++.||.|+.|++...+... ....|. .++..+..+..++.+..+ +.+..++.|+|
T Consensus 105 ~~~Ip~~~~~-~~~c~~~~dg~ir~~n~~p~k~~g-------~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 105 DLGIPNGRDS-SLGCVGAQDGRIRACNIKPNKVLG-------YVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred eecccccccc-ceeEEeccCCceeeeccccCceee-------eeccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence 3322 22233 488899999999999998876543 344454 445444444444444444 56666666654
No 353
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.76 E-value=0.0093 Score=44.87 Aligned_cols=201 Identities=9% Similarity=0.090 Sum_probs=116.9
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec-ccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCee
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA-HDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHST 120 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~ 120 (253)
..+.++.|+ |+.+.|++......-.|+=-..|+.+.++.- --...-.++|. ++.+.++--.++.+.++.+.......
T Consensus 86 ~nvS~LTyn-p~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 86 ANVSSLTYN-PDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred ccccceeeC-CCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence 568999999 6777777777777777776667888777651 12234567888 77777777778888888877653211
Q ss_pred e-------eeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC--CCeeeeccc-------ccceeEEEEec
Q 035558 121 I-------IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT--LPVVELQRH-------QASVNAIAWAP 184 (253)
Q Consensus 121 ~-------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~-------~~~i~~~~~~~ 184 (253)
. +......+...-.++|.|.+..++++--.+- +.+|...... ..+.....+ -..|.++.|++
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P--~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP--IGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC--cEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence 1 1112222557788999995555555544444 5555443222 111111111 23577889998
Q ss_pred CCCCeEEEecCCCcEEEEeccCCCCCCCC-CCCCeeeccCCCceeEEEEcCCCCceEEEEcCCc
Q 035558 185 HSSCHICTAGDDSQALIWDLSSMGQPVEG-GLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTK 247 (253)
Q Consensus 185 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 247 (253)
..+.+|+-+.+++.+.-.|....-..... ......+...-...-.|+..++|. +..++.-+.
T Consensus 243 ~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvSEPnl 305 (316)
T COG3204 243 ITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVSEPNL 305 (316)
T ss_pred CCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEEecCCc
Confidence 76668888888888888877654211100 000000011122345678888876 444554443
No 354
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.75 E-value=0.0036 Score=40.01 Aligned_cols=101 Identities=11% Similarity=0.044 Sum_probs=66.7
Q ss_pred eeEEEeeCC---CCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558 132 LVRLGWNKQ---DPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 132 i~~~~~~~~---~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
|++|++... ..+.|++|+.|.. |++|+-.. .+.++.. ...|++++-...+ .++.+..+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~-IRvf~~~e---~~~Ei~e-~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFE-IRVFKGDE---IVAEITE-TDKVTSLCSLGGG--RFAYALANGTVGVYDRSQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcE-EEEEeCCc---EEEEEec-ccceEEEEEcCCC--EEEEEecCCEEEEEeCccee
Confidence 455555432 3368999999988 99998653 3555554 4567777766664 79999999999999764432
Q ss_pred CCCCCCCCCeeeccCCCceeEEEEcCCC----CceEEEEcCCcEE
Q 035558 209 QPVEGGLDPILAYTAGAEIEQLQWSSSQ----PDWVAIAFSTKLQ 249 (253)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~i~ 249 (253)
........+.++++..-. +.++++-.+|.+-
T Consensus 75 ----------WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 ----------WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ----------eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 233344456676655433 2477887787764
No 355
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.00073 Score=58.77 Aligned_cols=96 Identities=17% Similarity=0.275 Sum_probs=68.0
Q ss_pred eEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecc
Q 035558 7 LLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAH 84 (253)
Q Consensus 7 ~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 84 (253)
.++.|++ .+-..|...+ +.. .|.+....++|++++|+ .++.+++.|-.+|.|.+||...++..+.+..|
T Consensus 101 ~ivi~Ts~ghvl~~d~~~n------L~~--~~~ne~v~~~Vtsvafn-~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~ 171 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGN------LGP--LHQNERVQGPVTSVAFN-QDGSLLLAGLGDGHVTVWDMHRAKILKVITEH 171 (1206)
T ss_pred eEEEEcCchhhhhhhhhcc------cch--hhcCCccCCcceeeEec-CCCceeccccCCCcEEEEEccCCcceeeeeec
Confidence 3444443 6666665542 111 23333344899999999 99999999999999999999999988888777
Q ss_pred cccEEEEEec----CCCeEEEEeCCCcEEEEEc
Q 035558 85 DKEVYDIAWG----GVGVFASVSADGSVRVFDL 113 (253)
Q Consensus 85 ~~~v~~~~~~----~~~~l~~~~~dg~i~i~d~ 113 (253)
..+.+.+-+. ++..++++...|. +|.+
T Consensus 172 ~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 172 GAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 6666655544 5557888887886 5544
No 356
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.62 E-value=0.0045 Score=50.23 Aligned_cols=164 Identities=16% Similarity=0.176 Sum_probs=93.2
Q ss_pred eEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEe---CC-CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC
Q 035558 66 TCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVS---AD-GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ 140 (253)
Q Consensus 66 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~---~d-g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 140 (253)
.+.+-|.. +.....+......+..-+|+ ++..++... .. ..+.++|+.+++....... .+.-..-+|+|
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~----~g~~~~P~fsp- 247 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF----NGNNGAPAFSP- 247 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc----CCccCCccCCC-
Confidence 34444443 43344444344556666777 666544332 22 3589999998876555432 22334568999
Q ss_pred CCCEEEEEE-eCCC-eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCe
Q 035558 141 DPRYMATII-MDSA-KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPI 218 (253)
Q Consensus 141 ~~~~l~~~~-~~~~-~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 218 (253)
+++.++.+. .++. .|.++|+.... +..+....+.-..-.|+|+|..+.++.+..|.-.||-........ .
T Consensus 248 DG~~l~f~~~rdg~~~iy~~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~------~ 319 (425)
T COG0823 248 DGSKLAFSSSRDGSPDIYLMDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV------T 319 (425)
T ss_pred CCCEEEEEECCCCCccEEEEcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce------e
Confidence 666666554 4443 37777887755 333443333334678999996555677777877777555433211 1
Q ss_pred eeccCCCceeEEEEcCCCCceEEEE
Q 035558 219 LAYTAGAEIEQLQWSSSQPDWVAIA 243 (253)
Q Consensus 219 ~~~~~~~~v~~~~~~~~~~~~~~~~ 243 (253)
........-..-.|+|+|+.++..+
T Consensus 320 riT~~~~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 320 RLTFSGGGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred EeeccCCCCcCccCCCCCCEEEEEe
Confidence 2222222222678999999777554
No 357
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.024 Score=45.58 Aligned_cols=191 Identities=15% Similarity=0.094 Sum_probs=117.0
Q ss_pred eEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeC---CCcEEEEEcCCCCCeee
Q 035558 46 TSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSA---DGSVRVFDLRDKEHSTI 121 (253)
Q Consensus 46 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~---dg~i~i~d~~~~~~~~~ 121 (253)
..++.++...+.++....++.|.+.|..+.+......--. ....+++. ++..+..+.. ++++.+.|-.+.+....
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 3566773333455565567899999987777666655222 56778888 7766655544 68888888888775444
Q ss_pred eeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeee-----ecccccceeEEEEecCCCCeEEEecCC
Q 035558 122 IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE-----LQRHQASVNAIAWAPHSSCHICTAGDD 196 (253)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~l~~~~~d 196 (253)
.... ..+ ..++++| +++.+++...+.+.|.+.|..... +.. ...-......+.++|++.+..++...+
T Consensus 156 ~~vG---~~P-~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~--v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 156 IPVG---NTP-TGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNS--VVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred EecC---CCc-ceEEECC-CCCeEEEEecCCCeEEEEeCCCcc--eeccccccccccCCCCceEEECCCCCEEEEEeccC
Confidence 2221 123 7899999 888777776555559999976543 221 111223446789999995333333333
Q ss_pred --CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE-EcCCcEEE
Q 035558 197 --SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI-AFSTKLQI 250 (253)
Q Consensus 197 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~i~v 250 (253)
+.+...|..+..... .....+.. ....+..+|++..+... ...+.+.+
T Consensus 229 ~~~~v~~id~~~~~v~~-----~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 229 GSNNVLKIDTATGNVTA-----TDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred CCceEEEEeCCCceEEE-----eccccccC-CCCceeECCCCCEEEEEecCCCeEEE
Confidence 688888888765322 00111122 45677888888766544 22344444
No 358
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.59 E-value=0.01 Score=48.41 Aligned_cols=139 Identities=12% Similarity=0.114 Sum_probs=70.8
Q ss_pred ccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE-ECC
Q 035558 84 HDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL-DIR 161 (253)
Q Consensus 84 ~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~-d~~ 161 (253)
....+..+.++ +++.++. +.||.-.++...... ... .+....++|.+ .+ .+|+-..... |.++ ++.
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r---~k~-----~G~g~~~vw~~-~n-~yAv~~~~~~-I~I~kn~~ 98 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWR---NKA-----FGSGLSFVWSS-RN-RYAVLESSST-IKIYKNFK 98 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTE---EEE-----EEE-SEEEE-T-SS-EEEEE-TTS--EEEEETTE
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCc---ccc-----cCceeEEEEec-Cc-cEEEEECCCe-EEEEEcCc
Confidence 44567889999 8888877 557777777633222 111 12456788987 44 4666665666 9986 333
Q ss_pred CCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558 162 FPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA 241 (253)
Q Consensus 162 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 241 (253)
... ...+.. ...+..+.. | .+|+..+.+ .|.+||..+++.. ..-.-.+|..+.|++++. +++
T Consensus 99 ~~~--~k~i~~-~~~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~~i---------~~i~v~~vk~V~Ws~~g~-~va 160 (443)
T PF04053_consen 99 NEV--VKSIKL-PFSVEKIFG---G-NLLGVKSSD-FICFYDWETGKLI---------RRIDVSAVKYVIWSDDGE-LVA 160 (443)
T ss_dssp E-T--T------SS-EEEEE----S-SSEEEEETT-EEEEE-TTT--EE---------EEESS-E-EEEEE-TTSS-EEE
T ss_pred ccc--ceEEcC-CcccceEEc---C-cEEEEECCC-CEEEEEhhHccee---------eEEecCCCcEEEEECCCC-EEE
Confidence 221 223322 123444433 6 577666644 8999999987632 122233589999999997 555
Q ss_pred EEcCCcEEEEE
Q 035558 242 IAFSTKLQILR 252 (253)
Q Consensus 242 ~~~~~~i~vw~ 252 (253)
...+..+.|++
T Consensus 161 l~t~~~i~il~ 171 (443)
T PF04053_consen 161 LVTKDSIYILK 171 (443)
T ss_dssp EE-S-SEEEEE
T ss_pred EEeCCeEEEEE
Confidence 55566777764
No 359
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.59 E-value=0.0003 Score=59.71 Aligned_cols=110 Identities=12% Similarity=0.217 Sum_probs=79.9
Q ss_pred eeEEEeeCCCCCEEEEEEe---CCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558 132 LVRLGWNKQDPRYMATIIM---DSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 132 i~~~~~~~~~~~~l~~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
-+-..|+| ...++++++. .+++|.||--. ++ |..... ..-.+++++|+|.. ..|+.|-.-|.+.+|.....+
T Consensus 18 sti~SWHP-sePlfAVA~fS~er~GSVtIfadt-GE-Pqr~Vt-~P~hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e 92 (1416)
T KOG3617|consen 18 STISSWHP-SEPLFAVASFSPERGGSVTIFADT-GE-PQRDVT-YPVHATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTE 92 (1416)
T ss_pred ccccccCC-CCceeEEEEecCCCCceEEEEecC-CC-CCcccc-cceehhhhccChHH-HHHhhccccceeEEEecCCce
Confidence 34467999 7777877764 23348777432 22 222111 22346779999987 588888899999999887755
Q ss_pred CCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 209 QPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
.- .....|..+|..+.||++|..++++..-+.+.+|+.
T Consensus 93 ~h-------tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~ 130 (1416)
T KOG3617|consen 93 TH-------TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRY 130 (1416)
T ss_pred ee-------eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEe
Confidence 33 256679999999999999999999999999999974
No 360
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.58 E-value=0.016 Score=42.82 Aligned_cols=144 Identities=11% Similarity=-0.077 Sum_probs=93.1
Q ss_pred CCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCe
Q 035558 53 AEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPL 132 (253)
Q Consensus 53 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i 132 (253)
....+++.|+..+.+.-.|.++++.+..-. -...|.+-+.--+++++.|+..|.+++.+.+++........... .-
T Consensus 21 dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~---vk 96 (354)
T KOG4649|consen 21 DSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET---VK 96 (354)
T ss_pred CCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhh---hc
Confidence 456788999999999999999998765432 23344433333477899999999999999999963322222111 11
Q ss_pred eEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEec
Q 035558 133 VRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDL 204 (253)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~ 204 (253)
......+ ++.++..++.|+. .+..|.++.. ++...+...+...+-+..|-. ..|+.+...|.+.--..
T Consensus 97 ~~a~~d~-~~glIycgshd~~-~yalD~~~~~-cVykskcgG~~f~sP~i~~g~-~sly~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 97 VRAQCDF-DGGLIYCGSHDGN-FYALDPKTYG-CVYKSKCGGGTFVSPVIAPGD-GSLYAAITAGAVLAVTK 164 (354)
T ss_pred cceEEcC-CCceEEEecCCCc-EEEecccccc-eEEecccCCceeccceecCCC-ceEEEEeccceEEEEcc
Confidence 1233445 8899999999999 9999998855 466655444444445555622 24555555555544333
No 361
>PHA02713 hypothetical protein; Provisional
Probab=97.49 E-value=0.01 Score=50.14 Aligned_cols=148 Identities=3% Similarity=-0.055 Sum_probs=79.6
Q ss_pred CCCEEEEEeCCC-----eEEEEeccCce--eeeeeecccccEEEEEecCCCeEEEEeCCC--------------------
Q 035558 54 EPRRIGTSSIDT-----TCTIWDIEREA--VDTQLIAHDKEVYDIAWGGVGVFASVSADG-------------------- 106 (253)
Q Consensus 54 ~~~~l~~~~~dg-----~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg-------------------- 106 (253)
++.+.+.|+.++ .+..||..+.+ .+..+....... +++..++.+.+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~-~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSY-GMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccc-cEEEECCEEEEEeCCCccccccccccccccccccccc
Confidence 577778887654 47889987664 222222111111 11212677888887653
Q ss_pred ---cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC-----CeEEEEECCC-CC-CCeeeecccccc
Q 035558 107 ---SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS-----AKVVVLDIRF-PT-LPVVELQRHQAS 176 (253)
Q Consensus 107 ---~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-----~~i~~~d~~~-~~-~~~~~~~~~~~~ 176 (253)
.+..||.++.+-. .+.......... +++.. ++.+.+.|+.++ ..+..||..+ .+ ..+..+......
T Consensus 430 ~~~~ve~YDP~td~W~-~v~~m~~~r~~~-~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 430 SSNKVIRYDTVNNIWE-TLPNFWTGTIRP-GVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred ccceEEEECCCCCeEe-ecCCCCcccccC-cEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence 4777888776421 111111111111 22222 567777777542 2267899886 33 223334333333
Q ss_pred eeEEEEecCCCCeEEEecCCC--cEEEEeccCCCC
Q 035558 177 VNAIAWAPHSSCHICTAGDDS--QALIWDLSSMGQ 209 (253)
Q Consensus 177 i~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~ 209 (253)
...+.+ ++ ++.++|+.|+ .+..||..+.+-
T Consensus 506 ~~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 506 LHTILH--DN-TIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred ceeEEE--CC-EEEEEeeecceeehhhcCcccccc
Confidence 333333 34 6888999888 777888877664
No 362
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.46 E-value=0.031 Score=43.31 Aligned_cols=196 Identities=13% Similarity=0.104 Sum_probs=101.9
Q ss_pred EecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeecc--
Q 035558 49 DWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYES-- 125 (253)
Q Consensus 49 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-- 125 (253)
.|.|..+.++.+--..+.|.-|+..+++.. .+. +.+.+.++... .+..|+++.. -+.+++.+++.....+...
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence 355333445666667788999988766422 222 23344555544 5555555532 3667777555432222221
Q ss_pred CCCCCCeeEEEeeCCCCCEEEEEEe-----C-----CCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecC
Q 035558 126 SEPDTPLVRLGWNKQDPRYMATIIM-----D-----SAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGD 195 (253)
Q Consensus 126 ~~~~~~i~~~~~~~~~~~~l~~~~~-----~-----~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 195 (253)
.......+.+...| ++.+.+.... . .+.++.+|. ... .+..+..+-..-++|+|+|++..++++=+.
T Consensus 107 ~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~-~~~l~~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 107 GLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGG-VVRLLDDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred CCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCC-EEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence 12223566778888 6666554433 1 112444443 222 244445445667899999999544455556
Q ss_pred CCcEEEEeccCCCCCCCCCCCCeeec-cCCCceeEEEEcCCCCceEEEEcC-CcEEEEE
Q 035558 196 DSQALIWDLSSMGQPVEGGLDPILAY-TAGAEIEQLQWSSSQPDWVAIAFS-TKLQILR 252 (253)
Q Consensus 196 dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~-~~i~vw~ 252 (253)
.+.|.-|++......... ....... ...+..-.++...+|..++++..+ +.|.+|+
T Consensus 184 ~~~i~r~~~d~~~g~~~~-~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~ 241 (307)
T COG3386 184 ANRIHRYDLDPATGPIGG-RRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFN 241 (307)
T ss_pred CCeEEEEecCcccCccCC-cceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEEC
Confidence 688888888742211100 1111122 234455566666677655433332 2555543
No 363
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.44 E-value=0.034 Score=47.28 Aligned_cols=172 Identities=12% Similarity=0.099 Sum_probs=90.9
Q ss_pred CCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEe------CCC--cEEEEEcCCCCCeeeeeccCCCCCCeeE
Q 035558 64 DTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVS------ADG--SVRVFDLRDKEHSTIIYESSEPDTPLVR 134 (253)
Q Consensus 64 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~------~dg--~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 134 (253)
+|.+.-.+-.....+.-..+....+.+.+.+ +++.++..- .|. .|.+++. +.....+.. + . ....
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~~~lt~--g-~-~~t~ 401 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVAVQVLE--G-H-SLTR 401 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcceeeec--C-C-CCCC
Confidence 6666554432222222222333467788888 888777665 244 4444454 222233322 1 1 3677
Q ss_pred EEeeCCCCCEEEEEEeCCC-----------eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEE--
Q 035558 135 LGWNKQDPRYMATIIMDSA-----------KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALI-- 201 (253)
Q Consensus 135 ~~~~~~~~~~l~~~~~~~~-----------~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i-- 201 (253)
-.|+| ++..+++...... .+.+.++..+.. .. .....|..+.|+|||. .++... +|.|.+
T Consensus 402 PsWsp-DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~-~~---~~~g~Issl~wSpDG~-RiA~i~-~g~v~Va~ 474 (591)
T PRK13616 402 PSWSL-DADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAV-AS---RVPGPISELQLSRDGV-RAAMII-GGKVYLAV 474 (591)
T ss_pred ceECC-CCCceEEEecCcceEEEeccCCCceEEEEeccCchh-hh---ccCCCcCeEEECCCCC-EEEEEE-CCEEEEEE
Confidence 88999 7776666543222 133334433221 11 2345799999999995 555443 477777
Q ss_pred -EeccCCCCCCCCCCCCeeec-cCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 202 -WDLSSMGQPVEGGLDPILAY-TAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 202 -wd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
-....+.... ..+..+. .-...+.++.|.+++. |+.+..+....+|.
T Consensus 475 Vvr~~~G~~~l---~~~~~l~~~l~~~~~~l~W~~~~~-L~V~~~~~~~~v~~ 523 (591)
T PRK13616 475 VEQTEDGQYAL---TNPREVGPGLGDTAVSLDWRTGDS-LVVGRSDPEHPVWY 523 (591)
T ss_pred EEeCCCCceee---cccEEeecccCCccccceEecCCE-EEEEecCCCCceEE
Confidence 3323332111 2222232 2344568899999987 55555555555554
No 364
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.043 Score=44.16 Aligned_cols=191 Identities=12% Similarity=0.073 Sum_probs=118.5
Q ss_pred CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC---CCeEEEEeccCcee
Q 035558 3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI---DTTCTIWDIEREAV 77 (253)
Q Consensus 3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~ 77 (253)
......+...+ .|.+.|.... +.......-. ....++++ +++..+..+.. ++++.+.|..+.+.
T Consensus 84 ~~~~vyv~~~~~~~v~vid~~~~----~~~~~~~vG~------~P~~~~~~-~~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 84 AGNKVYVTTGDSNTVSVIDTATN----TVLGSIPVGL------GPVGLAVD-PDGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred CCCeEEEecCCCCeEEEEcCccc----ceeeEeeecc------CCceEEEC-CCCCEEEEEecccCCceEEEEeCCCCeE
Confidence 34445555533 8888886664 3333332221 34578888 66655555544 68999999998888
Q ss_pred eeeeecccccEEEEEec-CCCeEEEE-eCCCcEEEEEcCCCCCee-eeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC--
Q 035558 78 DTQLIAHDKEVYDIAWG-GVGVFASV-SADGSVRVFDLRDKEHST-IIYESSEPDTPLVRLGWNKQDPRYMATIIMDS-- 152 (253)
Q Consensus 78 ~~~~~~~~~~v~~~~~~-~~~~l~~~-~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-- 152 (253)
......-..+ ..+++. ++..++.. ..++.|.+.|........ ..............+.++| ++..+.+.....
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~-~g~~~yV~~~~~~~ 230 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP-DGNRVYVANDGSGS 230 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECC-CCCEEEEEeccCCC
Confidence 8775543344 888999 88855554 478999999977665321 0000111222456788999 777666655544
Q ss_pred CeEEEEECCCCCCCeee-ecccccceeEEEEecCCCCeEEEe-cCCCcEEEEeccCCC
Q 035558 153 AKVVVLDIRFPTLPVVE-LQRHQASVNAIAWAPHSSCHICTA-GDDSQALIWDLSSMG 208 (253)
Q Consensus 153 ~~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~ 208 (253)
..+...|..+... ... ..........+..+|++ ..+.+. +..+.+.+-|..+..
T Consensus 231 ~~v~~id~~~~~v-~~~~~~~~~~~~~~v~~~p~g-~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 231 NNVLKIDTATGNV-TATDLPVGSGAPRGVAVDPAG-KAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred ceEEEEeCCCceE-EEeccccccCCCCceeECCCC-CEEEEEecCCCeEEEEeCCCCc
Confidence 2388888887552 221 11111145678999999 466655 455888888887755
No 365
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.41 E-value=0.044 Score=43.67 Aligned_cols=150 Identities=13% Similarity=0.102 Sum_probs=74.3
Q ss_pred cccEEEEEec-CCCeEEEE--eCC---CcEEEEEcCCCCCeeeeeccC-CCCCCeeEEEee-CCCCCEEEEEEeCCC-eE
Q 035558 85 DKEVYDIAWG-GVGVFASV--SAD---GSVRVFDLRDKEHSTIIYESS-EPDTPLVRLGWN-KQDPRYMATIIMDSA-KV 155 (253)
Q Consensus 85 ~~~v~~~~~~-~~~~l~~~--~~d---g~i~i~d~~~~~~~~~~~~~~-~~~~~i~~~~~~-~~~~~~l~~~~~~~~-~i 155 (253)
...+..+.|. ++..|+.. ..+ ..+.++|..++.......... ..-..-....|. +.+..++.....+|- .|
T Consensus 183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hl 262 (353)
T PF00930_consen 183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHL 262 (353)
T ss_dssp SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEE
T ss_pred ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEE
Confidence 3456778888 66633332 222 236677877765433332211 111122345554 634455555555554 24
Q ss_pred EEEECCCCCCCeeeecccccceeE-EEEecCCCCeEEEecCC--CcEEEEeccCC-CCCCCCCCCCeeeccCCCceeEEE
Q 035558 156 VVLDIRFPTLPVVELQRHQASVNA-IAWAPHSSCHICTAGDD--SQALIWDLSSM-GQPVEGGLDPILAYTAGAEIEQLQ 231 (253)
Q Consensus 156 ~~~d~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~l~~~~~d--g~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~v~~~~ 231 (253)
.+++..... ...+....-.|.. +.+++++..+.+++..+ +.-.+|.+.-. .... ..+......-..+.
T Consensus 263 y~~~~~~~~--~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~------~~LT~~~~~~~~~~ 334 (353)
T PF00930_consen 263 YLYDLDGGK--PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP------KCLTCEDGDHYSAS 334 (353)
T ss_dssp EEEETTSSE--EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE------EESSTTSSTTEEEE
T ss_pred EEEcccccc--eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe------EeccCCCCCceEEE
Confidence 444554432 4455544555644 77888875555677653 34445544433 1111 12222222226999
Q ss_pred EcCCCCceEEE
Q 035558 232 WSSSQPDWVAI 242 (253)
Q Consensus 232 ~~~~~~~~~~~ 242 (253)
|||++++++-.
T Consensus 335 ~Spdg~y~v~~ 345 (353)
T PF00930_consen 335 FSPDGKYYVDT 345 (353)
T ss_dssp E-TTSSEEEEE
T ss_pred ECCCCCEEEEE
Confidence 99999987743
No 366
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.40 E-value=0.056 Score=44.78 Aligned_cols=180 Identities=12% Similarity=0.224 Sum_probs=101.5
Q ss_pred CCeeEEEecCCCCCEEEEEe---CCCeEEEEeccCceeeeeeecccccEEEEEec-----CCCeEEEEeCCCcEEEEEcC
Q 035558 43 GPLTSFDWNEAEPRRIGTSS---IDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-----GVGVFASVSADGSVRVFDLR 114 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-----~~~~l~~~~~dg~i~i~d~~ 114 (253)
-++..++|- ||+.++-.. .+|.+++=| .+.+. .-.-|..+.|. +...+++......|.+|.+.
T Consensus 20 HPvhGlaWT--DGkqVvLT~L~l~~gE~kfGd---s~viG----qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWT--DGKQVVLTDLQLHNGEPKFGD---SKVIG----QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEec--CCCEEEEEeeeeeCCccccCC---ccEee----ccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 368899995 676665432 233333211 12232 33468889998 23356666778889999886
Q ss_pred CC--CCeeeee----ccC-CCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCC
Q 035558 115 DK--EHSTIIY----ESS-EPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSS 187 (253)
Q Consensus 115 ~~--~~~~~~~----~~~-~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 187 (253)
-. +..+.+. +.. ...---..+.|+| ....|++-...+. -.+++.+.....++.--...+.|.|.+|.+||.
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dv-SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDV-SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQ 168 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCce-eEeeeeeeCCceEEEeccCCceEEEEEecCcCC
Confidence 22 1111111 100 0000123478999 7777777666654 456666655544444334578899999999997
Q ss_pred CeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC
Q 035558 188 CHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ 236 (253)
Q Consensus 188 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 236 (253)
+++++.+..=.-++||-....... ......+.-++.|.++.-.-+.
T Consensus 169 RLVVAvGSsLHSyiWd~~qKtL~~---CsfcPVFdv~~~Icsi~AT~ds 214 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDSAQKTLHR---CSFCPVFDVGGYICSIEATVDS 214 (671)
T ss_pred EEEEEeCCeEEEEEecCchhhhhh---CCcceeecCCCceEEEEEeccc
Confidence 666666666677888865432110 1112333445566666554443
No 367
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.0057 Score=49.58 Aligned_cols=134 Identities=10% Similarity=0.042 Sum_probs=84.4
Q ss_pred eEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC------CCEEEEEEeCCCeEEEEECCCCCC-Ceeee
Q 035558 98 VFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD------PRYMATIIMDSAKVVVLDIRFPTL-PVVEL 170 (253)
Q Consensus 98 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~ 170 (253)
+|.++.....++-.|++.++.+..-.. +. .|.-+.+.|.. ...-++|-.+.+ |.-||.|-... .+...
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~---~~-di~mv~~t~d~K~~Ql~~e~TlvGLs~n~-vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKF---ED-DINMVDITPDFKFAQLTSEQTLVGLSDNS-VFRIDPRVQGKNKLAVV 422 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeec---cC-CcceeeccCCcchhcccccccEEeecCCc-eEEecccccCcceeeee
Confidence 344556666788889988874332221 11 25555665521 112234445666 99999986543 22222
Q ss_pred cccc----cceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcC
Q 035558 171 QRHQ----ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFS 245 (253)
Q Consensus 171 ~~~~----~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 245 (253)
+.|. ....|.+-..+| ++++||.+|.||+||. .+.... ..+.+-+.+|..|..+.+|+.+++.+..
T Consensus 423 q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AK------TAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAK------TALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred eccccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhh------hcccccCCceeeEEeeccCcEEEEeccc
Confidence 3322 235566666666 8999999999999998 333222 3667789999999999999976665543
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.0057 Score=49.57 Aligned_cols=146 Identities=12% Similarity=0.086 Sum_probs=94.6
Q ss_pred CCCEE-EEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-C-------CCeEEEEeCCCcEEEEEcCCCCCeeeee-
Q 035558 54 EPRRI-GTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-G-------VGVFASVSADGSVRVFDLRDKEHSTIIY- 123 (253)
Q Consensus 54 ~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~-------~~~l~~~~~dg~i~i~d~~~~~~~~~~~- 123 (253)
+.++| .++.....|+-.|++.|+.+..++-+.. |.-+.+. + ...-+.|-.|..|.-||.|-........
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 34444 4555556788889999999999987766 5444444 1 1223456678889999998554311111
Q ss_pred cc-C-CCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEE
Q 035558 124 ES-S-EPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALI 201 (253)
Q Consensus 124 ~~-~-~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i 201 (253)
.. . .......|++-. ...+|++|+.+|. |++||- .+......+++-..+|..+..+.+|. +++..+ +..+.+
T Consensus 423 q~kqy~~k~nFsc~aTT--~sG~IvvgS~~Gd-IRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGK-wil~Tc-~tyLlL 496 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATT--ESGYIVVGSLKGD-IRLYDR-IGRRAKTALPGLGDAIKHVDVTADGK-WILATC-KTYLLL 496 (644)
T ss_pred eccccccccccceeeec--CCceEEEeecCCc-EEeehh-hhhhhhhcccccCCceeeEEeeccCc-EEEEec-ccEEEE
Confidence 11 1 111133444433 5678999999999 999997 44444566778888999999999994 544433 567777
Q ss_pred EeccC
Q 035558 202 WDLSS 206 (253)
Q Consensus 202 wd~~~ 206 (253)
-++.-
T Consensus 497 i~t~~ 501 (644)
T KOG2395|consen 497 IDTLI 501 (644)
T ss_pred EEEec
Confidence 76653
No 369
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.0013 Score=57.27 Aligned_cols=99 Identities=16% Similarity=0.137 Sum_probs=72.1
Q ss_pred CCCEEEEEeCCCeEEEEeccCc-eeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCC
Q 035558 54 EPRRIGTSSIDTTCTIWDIERE-AVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTP 131 (253)
Q Consensus 54 ~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 131 (253)
-+..++.|+..|.+...|.... .....=..-.++|++++|+ ++..++.|-.+|.|.+||+..++..+.+.....+...
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 3567888998999988887643 1111111235799999999 9999999999999999999998877777766665556
Q ss_pred eeEEEeeCCCCCEEEEEEeCCC
Q 035558 132 LVRLGWNKQDPRYMATIIMDSA 153 (253)
Q Consensus 132 i~~~~~~~~~~~~l~~~~~~~~ 153 (253)
+..+.+.. ++..++++...|.
T Consensus 178 vi~v~~t~-~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 178 VIFVGRTS-QNSKLLTSDTGGS 198 (1206)
T ss_pred EEEEEEeC-CCcEEEEccCCCc
Confidence 66666665 4455666655553
No 370
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.05 Score=41.16 Aligned_cols=156 Identities=14% Similarity=0.143 Sum_probs=102.4
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee---eeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCe
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT---QLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHS 119 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 119 (253)
.-+..+.++ +++...+..+.-++|.|+.+..... .+.. .+--.++.. .|++...+..|.-+.+.|+.+...+
T Consensus 87 ~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~v-sGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 87 DLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYV-SGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEe-cCCEEEEeeccCcEEEEECCCCCCc
Confidence 345667766 6677777777889999998765332 2221 122233333 6888888886777889999998876
Q ss_pred eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccccc-ceeEEEEecCCCCeEEEecCCCc
Q 035558 120 TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQA-SVNAIAWAPHSSCHICTAGDDSQ 198 (253)
Q Consensus 120 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~~~~~dg~ 198 (253)
...-......+....++. .|++-.++..+++ +.+.|+.....|+..-.-..+ .+.++..+++. -+++... --
T Consensus 162 ~lagrya~~~~d~~~v~I---SGn~AYvA~~d~G-L~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr-~y~vvy~--eg 234 (370)
T COG5276 162 QLAGRYALPGGDTHDVAI---SGNYAYVAWRDGG-LTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNR-AYLVVYD--EG 234 (370)
T ss_pred eeeeeeccCCCCceeEEE---ecCeEEEEEeCCC-eEEEEccCCCCCeEEEEEecCCceEEEEecCCe-eEEEEcc--cc
Confidence 665555444444456666 5678888889999 999999998876544333333 68888888775 2444433 34
Q ss_pred EEEEeccCCCCC
Q 035558 199 ALIWDLSSMGQP 210 (253)
Q Consensus 199 i~iwd~~~~~~~ 210 (253)
+.+-|....+.+
T Consensus 235 vlivd~s~~ssp 246 (370)
T COG5276 235 VLIVDVSGPSSP 246 (370)
T ss_pred eEEEecCCCCCc
Confidence 566666665533
No 371
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.22 E-value=0.096 Score=43.74 Aligned_cols=197 Identities=13% Similarity=0.086 Sum_probs=103.4
Q ss_pred CCceEEeecC-cEEEEEccCCccccceeeeecCCCC-ccccCCee--EEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558 4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKN-SEYCGPLT--SFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT 79 (253)
Q Consensus 4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~v~--~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 79 (253)
++.+++...+ .|.-.|..++ +.+..++.... ......+. .+... ++..++.++.+|.|+.+|.++++.+.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG----~~~W~~~~~~~~~~~~~~~~~~g~~~~--~~~~V~v~~~~g~v~AlD~~TG~~~W 134 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATG----KVLWRYDPKLPADRGCCDVVNRGVAYW--DPRKVFFGTFDGRLVALDAETGKQVW 134 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCC----hhhceeCCCCCccccccccccCCcEEc--cCCeEEEecCCCeEEEEECCCCCEee
Confidence 3445555555 8888898887 44444433221 00000111 11221 22678888899999999999999887
Q ss_pred eeeccccc-----EE-EEEecCCCeEEEEe---------CCCcEEEEEcCCCCCeeeeeccCCCC---------------
Q 035558 80 QLIAHDKE-----VY-DIAWGGVGVFASVS---------ADGSVRVFDLRDKEHSTIIYESSEPD--------------- 129 (253)
Q Consensus 80 ~~~~~~~~-----v~-~~~~~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~--------------- 129 (253)
........ +. ...+ .+..++.++ .+|.+..+|..+++..-.........
T Consensus 135 ~~~~~~~~~~~~~i~ssP~v-~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 213 (488)
T cd00216 135 KFGNNDQVPPGYTMTGAPTI-VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGP 213 (488)
T ss_pred eecCCCCcCcceEecCCCEE-ECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecC
Confidence 66532210 11 1111 234455553 36789999998887432221110000
Q ss_pred --CCe-eEEEeeCCCCCEEEEEEeCC-----------------CeEEEEECCCCCCCeeeec--cccc----ceeEEEEe
Q 035558 130 --TPL-VRLGWNKQDPRYMATIIMDS-----------------AKVVVLDIRFPTLPVVELQ--RHQA----SVNAIAWA 183 (253)
Q Consensus 130 --~~i-~~~~~~~~~~~~l~~~~~~~-----------------~~i~~~d~~~~~~~~~~~~--~~~~----~i~~~~~~ 183 (253)
..+ ...++.+ .+..+++++.++ ..+.-+|..+++. +-.++ .|.. ......+.
T Consensus 214 ~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~-~W~~~~~~~~~~~~~~~s~p~~~ 291 (488)
T cd00216 214 GGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV-KWFYQTTPHDLWDYDGPNQPSLA 291 (488)
T ss_pred CCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE-EEEeeCCCCCCcccccCCCCeEE
Confidence 001 1234444 455666666544 1388888888764 33332 1110 00011111
Q ss_pred ----cCCC--CeEEEecCCCcEEEEeccCCCC
Q 035558 184 ----PHSS--CHICTAGDDSQALIWDLSSMGQ 209 (253)
Q Consensus 184 ----~~~~--~~l~~~~~dg~i~iwd~~~~~~ 209 (253)
-++. ..++.++.+|.+...|.++++.
T Consensus 292 ~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~ 323 (488)
T cd00216 292 DIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL 323 (488)
T ss_pred eccccCCCeeEEEEEECCCceEEEEECCCCcE
Confidence 1221 2577888899999999988763
No 372
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.21 E-value=0.066 Score=41.66 Aligned_cols=152 Identities=13% Similarity=0.125 Sum_probs=88.3
Q ss_pred CCCEEEEEeCCCeEEEEecc-Cceeeeee----ecccccEE-EEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccC
Q 035558 54 EPRRIGTSSIDTTCTIWDIE-REAVDTQL----IAHDKEVY-DIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESS 126 (253)
Q Consensus 54 ~~~~l~~~~~dg~i~vwd~~-~~~~~~~~----~~~~~~v~-~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 126 (253)
..+.+.+-+.||.+.-..+. .|+..+.. ..-..++. .-++. .+..++--+.+|.|+-.|+...... ......
T Consensus 146 ~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~-~~~~~~ 224 (342)
T PF06433_consen 146 GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAK-FGKPWS 224 (342)
T ss_dssp ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEE-EEEEEE
T ss_pred CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccc-ccCccc
Confidence 34567778889999888886 44433221 11122232 33444 5556666889999999999876521 111100
Q ss_pred ---------C-CCCCeeEEEeeCCCCCEEEEEEeC---------CCeEEEEECCCCCCCeeeecccccceeEEEEecCCC
Q 035558 127 ---------E-PDTPLVRLGWNKQDPRYMATIIMD---------SAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSS 187 (253)
Q Consensus 127 ---------~-~~~~i~~~~~~~~~~~~l~~~~~~---------~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 187 (253)
+ ..+.-.-+++++ ..+.|.+.-.. +..|.++|+.+.+. +.++.. ..++.+|+.+.+..
T Consensus 225 ~~t~~e~~~~WrPGG~Q~~A~~~-~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr-v~Ri~l-~~~~~Si~Vsqd~~ 301 (342)
T PF06433_consen 225 LLTDAEKADGWRPGGWQLIAYHA-ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR-VARIPL-EHPIDSIAVSQDDK 301 (342)
T ss_dssp SS-HHHHHTTEEE-SSS-EEEET-TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE-EEEEEE-EEEESEEEEESSSS
T ss_pred ccCccccccCcCCcceeeeeecc-ccCeEEEEecCCCCCCccCCceEEEEEECCCCeE-EEEEeC-CCccceEEEccCCC
Confidence 0 012344578887 34343332211 12588889988664 666653 34688999998774
Q ss_pred CeEEEe-cCCCcEEEEeccCCCC
Q 035558 188 CHICTA-GDDSQALIWDLSSMGQ 209 (253)
Q Consensus 188 ~~l~~~-~~dg~i~iwd~~~~~~ 209 (253)
-+|++. ..++.+.+||..+++.
T Consensus 302 P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 302 PLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp -EEEEEETTTTEEEEEETTT--E
T ss_pred cEEEEEcCCCCeEEEEeCcCCcE
Confidence 466554 5689999999999864
No 373
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.16 E-value=0.15 Score=44.84 Aligned_cols=228 Identities=10% Similarity=0.064 Sum_probs=134.0
Q ss_pred CCCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC-----------C---Ce
Q 035558 2 CQKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI-----------D---TT 66 (253)
Q Consensus 2 p~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------d---g~ 66 (253)
+.-++-|+.+.+ .+++..++.- +. -..+++.-+ .....+++. +....+++.+. . ..
T Consensus 681 ~a~~d~l~~~~~~~l~i~tid~i-qk-l~irtvpl~------~~prrI~~q-~~sl~~~v~s~r~e~~~~~~~ee~~~s~ 751 (1096)
T KOG1897|consen 681 DAYPDSLASANGGALTIGTIDEI-QK-LHIRTVPLG------ESPRRICYQ-ESSLTFGVLSNRIESSAEYYGEEYEVSF 751 (1096)
T ss_pred ccCCceEEEecCCceEEEEecch-hh-cceeeecCC------CChhheEec-ccceEEEEEecccccchhhcCCcceEEE
Confidence 445666777776 8888887663 11 223344444 345667776 32333332221 1 13
Q ss_pred EEEEeccCceeeeeeec-cc---ccEEEEEec-C-CCeEEEEe----------CCCcEEEEEcCCCCCeeeeeccCCCCC
Q 035558 67 CTIWDIEREAVDTQLIA-HD---KEVYDIAWG-G-VGVFASVS----------ADGSVRVFDLRDKEHSTIIYESSEPDT 130 (253)
Q Consensus 67 i~vwd~~~~~~~~~~~~-~~---~~v~~~~~~-~-~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~ 130 (253)
++++|-++.+.+...+- .. ..|.+..|. + +.+++.|. ..|.|.++.+...+..+.+.+.. -.+
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~-v~G 830 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETV-VKG 830 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeee-ecc
Confidence 66677666554433221 11 234455577 5 56666664 25788888887744444443322 233
Q ss_pred CeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCC
Q 035558 131 PLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQP 210 (253)
Q Consensus 131 ~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 210 (253)
.+.++.-- +++++|.- ... |++|++.+.++ ++.-..+..++..+...-.++ .++.|..-+++.+-..+..+..
T Consensus 831 av~aL~~f--ngkllA~I--n~~-vrLye~t~~~e-Lr~e~~~~~~~~aL~l~v~gd-eI~VgDlm~Sitll~y~~~eg~ 903 (1096)
T KOG1897|consen 831 AVYALVEF--NGKLLAGI--NQS-VRLYEWTTERE-LRIECNISNPIIALDLQVKGD-EIAVGDLMRSITLLQYKGDEGN 903 (1096)
T ss_pred ceeehhhh--CCeEEEec--CcE-EEEEEccccce-ehhhhcccCCeEEEEEEecCc-EEEEeeccceEEEEEEeccCCc
Confidence 55554432 67777653 333 99999987644 555566778899999988884 9999998888888777665533
Q ss_pred CCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEE
Q 035558 211 VEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQIL 251 (253)
Q Consensus 211 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw 251 (253)
. ......-+..+.+++.+-.+.. ++.+..++.+.+.
T Consensus 904 f----~evArD~~p~Wmtaveil~~d~-ylgae~~gNlf~v 939 (1096)
T KOG1897|consen 904 F----EEVARDYNPNWMTAVEILDDDT-YLGAENSGNLFTV 939 (1096)
T ss_pred e----EEeehhhCccceeeEEEecCce-EEeecccccEEEE
Confidence 2 0112223677888888876654 4555555555554
No 374
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.16 E-value=0.0024 Score=34.11 Aligned_cols=30 Identities=10% Similarity=0.312 Sum_probs=27.7
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEecc
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE 73 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 73 (253)
..|..++|+ |..++||.|+.+|.|.++.+.
T Consensus 12 ~~v~~~~w~-P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWC-PTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEEC-CCCCEEEEEECCCeEEEEECC
Confidence 579999999 889999999999999999983
No 375
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.11 E-value=0.043 Score=42.35 Aligned_cols=152 Identities=11% Similarity=0.129 Sum_probs=74.5
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCC-CCCe-
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRD-KEHS- 119 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~-~~~~- 119 (253)
+.+..+.-+ +++++++++.......-||.....-...-+.....|..|.|. ++.+.+.+ ..|.|+.=+... .+..
T Consensus 145 gs~~~~~r~-~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~ 222 (302)
T PF14870_consen 145 GSINDITRS-SDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS 222 (302)
T ss_dssp --EEEEEE--TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred ceeEeEEEC-CCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc
Confidence 567888877 888888887665555677764332222222346789999999 77766654 888888877221 1111
Q ss_pred eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeee--ecccccceeEEEEecCCCCeEEEecCCC
Q 035558 120 TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE--LQRHQASVNAIAWAPHSSCHICTAGDDS 197 (253)
Q Consensus 120 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~dg 197 (253)
..+.......-.+..++|.+ +....++|+ .+. .+.....++.-.+. ...-...++.+.|.+.. .-+.-+.+|
T Consensus 223 ~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg-~G~--l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~--~gf~lG~~G 296 (302)
T PF14870_consen 223 EPIIPIKTNGYGILDLAYRP-PNEIWAVGG-SGT--LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD--KGFVLGQDG 296 (302)
T ss_dssp --B-TTSS--S-EEEEEESS-SS-EEEEES-TT---EEEESSTTSS-EE-GGGTTSSS---EEEEEETT--EEEEE-STT
T ss_pred cccCCcccCceeeEEEEecC-CCCEEEEeC-Ccc--EEEeCCCCccceECccccCCCCceEEEEEcCCC--ceEEECCCc
Confidence 11111112222588899998 666666554 443 34444444321121 11224457888887664 444555678
Q ss_pred cEEEE
Q 035558 198 QALIW 202 (253)
Q Consensus 198 ~i~iw 202 (253)
.|.-|
T Consensus 297 ~ll~~ 301 (302)
T PF14870_consen 297 VLLRY 301 (302)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77554
No 376
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.08 E-value=0.043 Score=45.43 Aligned_cols=148 Identities=15% Similarity=0.167 Sum_probs=85.2
Q ss_pred ccEEEEEecCCCeE-EEEe--CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC----CCCEEEEEEeCCCeEEEE
Q 035558 86 KEVYDIAWGGVGVF-ASVS--ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ----DPRYMATIIMDSAKVVVL 158 (253)
Q Consensus 86 ~~v~~~~~~~~~~l-~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~~~~~i~~~ 158 (253)
.++..++|.||+.+ ++.- .+|.+++=|- .++.. -..|..+.|.|. ...+||+-. ... |.+|
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds------~viGq----FEhV~GlsW~P~~~~~~paLLAVQH-kkh-VtVW 87 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS------KVIGQ----FEHVHGLSWAPPCTADTPALLAVQH-KKH-VTVW 87 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCc------cEeec----cceeeeeeecCcccCCCCceEEEec-cce-EEEE
Confidence 58899999955544 3431 2333322111 12211 126888999884 235666543 444 9999
Q ss_pred ECCCCC----CCeeeecc-cc----cceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeE
Q 035558 159 DIRFPT----LPVVELQR-HQ----ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQ 229 (253)
Q Consensus 159 d~~~~~----~~~~~~~~-~~----~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~ 229 (253)
.+.-.. +.+..... .. ---....|+|..+ .|+.-.....-.+++++...... ..-....+.|.+
T Consensus 88 qL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srV------kaDi~~~G~IhC 160 (671)
T PF15390_consen 88 QLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRV------KADIKTSGLIHC 160 (671)
T ss_pred EeccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceE------EEeccCCceEEE
Confidence 886321 11111111 11 1224578999985 66665555454567777655433 344466789999
Q ss_pred EEEcCCCCceE-EEEcCCcEEEEE
Q 035558 230 LQWSSSQPDWV-AIAFSTKLQILR 252 (253)
Q Consensus 230 ~~~~~~~~~~~-~~~~~~~i~vw~ 252 (253)
.+|.+||++++ |.++.=.-.+||
T Consensus 161 ACWT~DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 161 ACWTKDGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred EEecCcCCEEEEEeCCeEEEEEec
Confidence 99999999877 455544556775
No 377
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.05 E-value=0.13 Score=42.03 Aligned_cols=160 Identities=17% Similarity=0.201 Sum_probs=89.6
Q ss_pred CeeEEEecCCCCCEEEEE-eCCC----eEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCC-----------
Q 035558 44 PLTSFDWNEAEPRRIGTS-SIDT----TCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADG----------- 106 (253)
Q Consensus 44 ~v~~~~~~~~~~~~l~~~-~~dg----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg----------- 106 (253)
.+...+++ |+++++|-+ +..| .|+++|+++++.+...-... ....+.|. +++.|+....+.
T Consensus 125 ~~~~~~~S-pdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVS-PDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEET-TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeEC-CCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 34467788 888887755 4444 59999999997655321111 12238999 767665554332
Q ss_pred cEEEEEcCCCCCe-eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC---eEEEEECCCC---CCCeeeecccccce-e
Q 035558 107 SVRVFDLRDKEHS-TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA---KVVVLDIRFP---TLPVVELQRHQASV-N 178 (253)
Q Consensus 107 ~i~i~d~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~---~i~~~d~~~~---~~~~~~~~~~~~~i-~ 178 (253)
.|+.|.+.+.... ..++...........+..++ ++++++.....+. .+.+.|+... ......+......+ .
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~ 281 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY 281 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence 3788888776543 34444433332366788888 8888776655443 3788888774 22344444333333 3
Q ss_pred EEEEecCCCCeEEEec---CCCcEEEEeccCCC
Q 035558 179 AIAWAPHSSCHICTAG---DDSQALIWDLSSMG 208 (253)
Q Consensus 179 ~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~ 208 (253)
.+... .+ .+++... ..+.|.-.++....
T Consensus 282 ~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 282 YVDHH-GD-RLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp EEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTS
T ss_pred EEEcc-CC-EEEEeeCCCCCCcEEEEecccccc
Confidence 34433 33 3444332 34667667776654
No 378
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=97.03 E-value=0.029 Score=47.51 Aligned_cols=107 Identities=14% Similarity=0.235 Sum_probs=65.7
Q ss_pred CEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEe--cCCCCeEEEecCCCcEEEEeccCCC----CCCCCCCC
Q 035558 143 RYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWA--PHSSCHICTAGDDSQALIWDLSSMG----QPVEGGLD 216 (253)
Q Consensus 143 ~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~ 216 (253)
+.+++...++..+.|||.+.............+.|..+.|. |++ +.+++.+..+.|.+|--.... .|.-....
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~ 119 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIR 119 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchhhhcCCcccceeE
Confidence 34555566676799999987652222222456789999986 577 577788888999998543221 11100001
Q ss_pred CeeeccCC-CceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 217 PILAYTAG-AEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 217 ~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
......++ .+|.+..|.++|. +.++.++.+.|++
T Consensus 120 ~i~i~~~T~h~Igds~Wl~~G~--LvV~sGNqlfv~d 154 (631)
T PF12234_consen 120 KIDISSHTPHPIGDSIWLKDGT--LVVGSGNQLFVFD 154 (631)
T ss_pred EEEeecCCCCCccceeEecCCe--EEEEeCCEEEEEC
Confidence 12223443 6899999999985 3444456677653
No 379
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.03 E-value=0.17 Score=43.08 Aligned_cols=177 Identities=9% Similarity=0.010 Sum_probs=94.4
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC-C-----eEEEEeccCceeee--eeeccc
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID-T-----TCTIWDIEREAVDT--QLIAHD 85 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g-----~i~vwd~~~~~~~~--~~~~~~ 85 (253)
.+..||...+ .+.....+.... .-.+++.. ++...++|+.| | .+..||....+-.. .+....
T Consensus 302 ~ve~yd~~~~--~w~~~a~m~~~r------~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R 371 (571)
T KOG4441|consen 302 SVECYDPKTN--EWSSLAPMPSPR------CRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR 371 (571)
T ss_pred eeEEecCCcC--cEeecCCCCccc------ccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcc
Confidence 5777777763 223333333222 23345553 56788889888 3 56778887765222 222111
Q ss_pred ccEEEEEecCCCeEEEEeCCCc-----EEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC-----eE
Q 035558 86 KEVYDIAWGGVGVFASVSADGS-----VRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA-----KV 155 (253)
Q Consensus 86 ~~v~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~-----~i 155 (253)
.. .+++..++.+.+.|+.||. +-.||.++.+-. ..............+.+ ++.+.++||.++. ++
T Consensus 372 ~~-~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~-~va~m~~~r~~~gv~~~---~g~iYi~GG~~~~~~~l~sv 446 (571)
T KOG4441|consen 372 SD-FGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWT-PVAPMLTRRSGHGVAVL---GGKLYIIGGGDGSSNCLNSV 446 (571)
T ss_pred cc-ceeEEECCEEEEEeccccccccccEEEecCCCCccc-ccCCCCcceeeeEEEEE---CCEEEEEcCcCCCccccceE
Confidence 11 1222227889999999865 677787776521 11111111112222222 7888888886653 37
Q ss_pred EEEECCCCC-CCeeeecccccceeEEEEecCCCCeEEEecCCCc-----EEEEeccCCC
Q 035558 156 VVLDIRFPT-LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQ-----ALIWDLSSMG 208 (253)
Q Consensus 156 ~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~ 208 (253)
..||..+.. ..+..+..-... ..++.-. + .+.+.|+.|+. |..||..+.+
T Consensus 447 e~YDP~t~~W~~~~~M~~~R~~-~g~a~~~-~-~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 447 ECYDPETNTWTLIAPMNTRRSG-FGVAVLN-G-KIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred EEEcCCCCceeecCCccccccc-ceEEEEC-C-EEEEECCccCCCccceEEEEcCCCCc
Confidence 788887754 112222211111 1233333 3 57788887763 6678877755
No 380
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.01 E-value=0.0033 Score=33.54 Aligned_cols=30 Identities=23% Similarity=0.616 Sum_probs=27.3
Q ss_pred ccceeEEEEecCCCCeEEEecCCCcEEEEec
Q 035558 174 QASVNAIAWAPHSSCHICTAGDDSQALIWDL 204 (253)
Q Consensus 174 ~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~ 204 (253)
...|..++|+|..+ +||.++.||.|.+|.+
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC
Confidence 35689999999995 9999999999999998
No 381
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.079 Score=38.06 Aligned_cols=178 Identities=11% Similarity=0.086 Sum_probs=92.4
Q ss_pred CCceEEeecC----cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558 4 KPDLLATSSD----FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT 79 (253)
Q Consensus 4 ~~~~l~~~~~----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 79 (253)
++.++.+.+. .|++||+.++ +.+..-.-.....|...|+.+ .+ .+..-.-.+|.-..+|..+.+.+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~g----q~~~s~~l~~~~~FgEGit~~----gd-~~y~LTw~egvaf~~d~~t~~~lg 125 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTG----QEIFSEKLAPDTVFGEGITKL----GD-YFYQLTWKEGVAFKYDADTLEELG 125 (262)
T ss_pred CCEEEEeccccccceeEEEeccCc----eEEEEeecCCccccccceeec----cc-eEEEEEeccceeEEEChHHhhhhc
Confidence 5667777662 9999999976 433332222222222334322 12 222333467888999999888777
Q ss_pred eeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeee--ccCCCCCCeeEEEeeCCCCCEEEEEE--------
Q 035558 80 QLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIY--ESSEPDTPLVRLGWNKQDPRYMATII-------- 149 (253)
Q Consensus 80 ~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~-------- 149 (253)
.+. .++.=+.++.. +..|+.+....+++.-|.++-.....+. ....+-..++.+.|- +|.+.|-.=
T Consensus 126 ~~~-y~GeGWgLt~d-~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI 201 (262)
T COG3823 126 RFS-YEGEGWGLTSD-DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARI 201 (262)
T ss_pred ccc-cCCcceeeecC-CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEE
Confidence 665 34555666654 4445555555566666655433222211 111111233344443 333322221
Q ss_pred --eCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEec
Q 035558 150 --MDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAG 194 (253)
Q Consensus 150 --~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 194 (253)
..|..+..+|+......+..-..|..-.+.+++.|++++++++|-
T Consensus 202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 223323334544332222233345667899999999877777774
No 382
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.93 E-value=0.11 Score=44.75 Aligned_cols=147 Identities=11% Similarity=0.145 Sum_probs=90.5
Q ss_pred CCEEEEEeCCCeEEEEeccCceeee------eee----------------cccccEEEEEec---CCCeEEEEeCCCcEE
Q 035558 55 PRRIGTSSIDTTCTIWDIEREAVDT------QLI----------------AHDKEVYDIAWG---GVGVFASVSADGSVR 109 (253)
Q Consensus 55 ~~~l~~~~~dg~i~vwd~~~~~~~~------~~~----------------~~~~~v~~~~~~---~~~~l~~~~~dg~i~ 109 (253)
.++++.|. .+.|.||++....... .+. .-...|+.|... +...|+.|.+||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 66777765 6799999986432210 000 012346666555 677899999999999
Q ss_pred EEEcCCC-----------C------CeeeeeccCCCCCCeeEEEee--CCCCCEEEEEEeCCCeEEEEECCCC--CCCee
Q 035558 110 VFDLRDK-----------E------HSTIIYESSEPDTPLVRLGWN--KQDPRYMATIIMDSAKVVVLDIRFP--TLPVV 168 (253)
Q Consensus 110 i~d~~~~-----------~------~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~~~~~i~~~d~~~~--~~~~~ 168 (253)
+|.++.- + .+.+.... .-...++.++++ . ..++||+++.... |.||-.... +....
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~-~~rlIAVSsNs~~-VTVFaf~l~~~r~~~~ 204 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYK-KSRLIAVSSNSQE-VTVFAFALVDERFYHV 204 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecC-cceEEEEecCCce-EEEEEEeccccccccc
Confidence 9976310 0 00111111 122378889998 5 6677777776666 777754432 21111
Q ss_pred eecccccceeEEEEecCC--CC---eEEEecCCCcEEEEecc
Q 035558 169 ELQRHQASVNAIAWAPHS--SC---HICTAGDDSQALIWDLS 205 (253)
Q Consensus 169 ~~~~~~~~i~~~~~~~~~--~~---~l~~~~~dg~i~iwd~~ 205 (253)
.-..+...|.++.|-++. +. .+++++-.|.+.+|++.
T Consensus 205 ~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 205 PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred cccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 122356678899998754 12 67888999999999983
No 383
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.93 E-value=0.14 Score=40.61 Aligned_cols=205 Identities=12% Similarity=0.056 Sum_probs=94.6
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEe
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAW 93 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 93 (253)
.+.+.|+.++ + +..+..... .......++ ++.+.++-...+..|+-.|+++.+....+......+-...|
T Consensus 61 nly~lDL~t~----~-i~QLTdg~g----~~~~g~~~s-~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~ 130 (386)
T PF14583_consen 61 NLYLLDLATG----E-ITQLTDGPG----DNTFGGFLS-PDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTW 130 (386)
T ss_dssp EEEEEETTT-----E-EEE---SS-----B-TTT-EE--TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEE
T ss_pred ceEEEEcccC----E-EEECccCCC----CCccceEEe-cCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccce
Confidence 7888888884 3 333433321 222345566 55666655555568888999998765555555555544555
Q ss_pred c---CCCeEEEEeC----------------------CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558 94 G---GVGVFASVSA----------------------DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI 148 (253)
Q Consensus 94 ~---~~~~l~~~~~----------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 148 (253)
. ++..++-.-. ...|.-.|+.+++.. .+.. ....+..+.|+|.++.+|+.|
T Consensus 131 v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~-~v~~---~~~wlgH~~fsP~dp~li~fC 206 (386)
T PF14583_consen 131 VANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK-VVFE---DTDWLGHVQFSPTDPTLIMFC 206 (386)
T ss_dssp EE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE-EEEE---ESS-EEEEEEETTEEEEEEEE
T ss_pred eeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee-EEEe---cCccccCcccCCCCCCEEEEe
Confidence 4 4444432211 123444566665532 2222 123788999999888888887
Q ss_pred EeCC--C-eEEEEECCCCCCCeeeecccc--cceeEEEEecCCCCeEEEec----CCCcEEEEeccCCCCCCCCCCCCee
Q 035558 149 IMDS--A-KVVVLDIRFPTLPVVELQRHQ--ASVNAIAWAPHSSCHICTAG----DDSQALIWDLSSMGQPVEGGLDPIL 219 (253)
Q Consensus 149 ~~~~--~-~i~~~d~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~ 219 (253)
-... . .-++|-+++.......+..+. ..+..=-|.|+|..+...+- .+..|.-+|+.++... .
T Consensus 207 HEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~--------~ 278 (386)
T PF14583_consen 207 HEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR--------R 278 (386)
T ss_dssp E-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE--------E
T ss_pred ccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce--------E
Confidence 5422 1 124565544332233333332 23444578999964444222 3445666677665421 1
Q ss_pred eccCCCceeEEEEcCCCCceEEE
Q 035558 220 AYTAGAEIEQLQWSSSQPDWVAI 242 (253)
Q Consensus 220 ~~~~~~~v~~~~~~~~~~~~~~~ 242 (253)
.....+...+--+++++ ++++
T Consensus 279 -~~~~p~~~H~~ss~Dg~-L~vG 299 (386)
T PF14583_consen 279 -LMEMPWCSHFMSSPDGK-LFVG 299 (386)
T ss_dssp -EEEE-SEEEEEE-TTSS-EEEE
T ss_pred -EEeCCceeeeEEcCCCC-EEEe
Confidence 11222344555677886 4443
No 384
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.89 E-value=0.0035 Score=45.22 Aligned_cols=65 Identities=9% Similarity=0.042 Sum_probs=50.0
Q ss_pred CCCCEEEEEeCCCeEEEEeccCceeeeeeeccc-ccEEEEEec-CCCeEEEE--eCCCcEEEEEcCCCC
Q 035558 53 AEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHD-KEVYDIAWG-GVGVFASV--SADGSVRVFDLRDKE 117 (253)
Q Consensus 53 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~-~~~~l~~~--~~dg~i~i~d~~~~~ 117 (253)
.++.+..++..||.|+.|+.+..+.+.....|+ .++..+... .++.++.+ |.|..++.|++....
T Consensus 112 ~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 112 RDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred cccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence 345588899999999999999888777766777 566666666 77777777 788888888887554
No 385
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.87 E-value=0.13 Score=39.28 Aligned_cols=143 Identities=14% Similarity=0.168 Sum_probs=79.4
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeee-----
Q 035558 95 GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE----- 169 (253)
Q Consensus 95 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~----- 169 (253)
.++.|+.|..+| +.++++........+... ..|..+...| +-+.+++-+ |+. +.++++.........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~----~~I~ql~vl~-~~~~llvLs-d~~-l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKL----SSITQLSVLP-ELNLLLVLS-DGQ-LYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeec----ceEEEEEEec-ccCEEEEEc-CCc-cEEEEchhhccccccccccc
Confidence 578899999999 999999433322222221 1499999998 555555544 366 999998765432210
Q ss_pred --------ecccccceeEEE--EecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558 170 --------LQRHQASVNAIA--WAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW 239 (253)
Q Consensus 170 --------~~~~~~~i~~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 239 (253)
.......+...+ -.+.+...|+.+ ...+|.+|......... ........-...+.+++|.++ .
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f---~~~~ke~~lp~~~~~i~~~~~---~ 150 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSF---SKLLKEISLPDPPSSIAFLGN---K 150 (275)
T ss_pred cccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccc---cceeEEEEcCCCcEEEEEeCC---E
Confidence 111223344444 123332344444 45599999887742110 011233445688899999843 3
Q ss_pred EEEEcCCcEEEEE
Q 035558 240 VAIAFSTKLQILR 252 (253)
Q Consensus 240 ~~~~~~~~i~vw~ 252 (253)
++.+..+...+.+
T Consensus 151 i~v~~~~~f~~id 163 (275)
T PF00780_consen 151 ICVGTSKGFYLID 163 (275)
T ss_pred EEEEeCCceEEEe
Confidence 3333344444444
No 386
>PHA03098 kelch-like protein; Provisional
Probab=96.85 E-value=0.22 Score=42.19 Aligned_cols=147 Identities=11% Similarity=0.010 Sum_probs=72.4
Q ss_pred CCCEEEEEeCC-----CeEEEEeccCceee--eeeecccccEEEEEecCCCeEEEEeCC------CcEEEEEcCCCCCee
Q 035558 54 EPRRIGTSSID-----TTCTIWDIEREAVD--TQLIAHDKEVYDIAWGGVGVFASVSAD------GSVRVFDLRDKEHST 120 (253)
Q Consensus 54 ~~~~l~~~~~d-----g~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~ 120 (253)
++..++.|+.+ ..+..||..+.+-. ..+...... .+++..++..++.|+.+ ..+..||..+.+-.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~- 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWS- 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeee-
Confidence 46777778765 24677888765422 112111111 12222267777777732 35888998876421
Q ss_pred eeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC-------CeEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEE
Q 035558 121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDS-------AKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICT 192 (253)
Q Consensus 121 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-------~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~ 192 (253)
.....+..... .++... ++.+++.||.+. ..+.+||..+.+- .+..+.........+.+ ++ ++++.
T Consensus 420 ~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~-~iyv~ 493 (534)
T PHA03098 420 KGSPLPISHYG-GCAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NN-KIYVV 493 (534)
T ss_pred ecCCCCccccC-ceEEEE--CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CC-EEEEE
Confidence 11111111111 122222 566677776432 1278889876541 11111111111111222 44 56777
Q ss_pred ecCC-----CcEEEEeccCCC
Q 035558 193 AGDD-----SQALIWDLSSMG 208 (253)
Q Consensus 193 ~~~d-----g~i~iwd~~~~~ 208 (253)
|+.+ +.+.+||..+..
T Consensus 494 GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 494 GGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred cCCcCCcccceeEEEeCCCCE
Confidence 7754 467888877654
No 387
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.80 E-value=0.15 Score=38.97 Aligned_cols=143 Identities=15% Similarity=0.148 Sum_probs=82.9
Q ss_pred CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee--
Q 035558 4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ-- 80 (253)
Q Consensus 4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-- 80 (253)
.++.|+.|.+ .+.+++.... .......+. .+|..+... ++-+.+++-+ |+.++++++........
T Consensus 6 ~~~~L~vGt~~Gl~~~~~~~~---~~~~~i~~~-------~~I~ql~vl-~~~~~llvLs-d~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 6 WGDRLLVGTEDGLYVYDLSDP---SKPTRILKL-------SSITQLSVL-PELNLLLVLS-DGQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred CCCEEEEEECCCEEEEEecCC---ccceeEeec-------ceEEEEEEe-cccCEEEEEc-CCccEEEEchhhccccccc
Confidence 3456666665 8999998332 122222222 358888888 5566665554 59999999876543331
Q ss_pred ------------eecccccEEEEE-ec--CCCeEEEEeCCCcEEEEEcCCCCC-e-eeeeccCCCCCCeeEEEeeCCCCC
Q 035558 81 ------------LIAHDKEVYDIA-WG--GVGVFASVSADGSVRVFDLRDKEH-S-TIIYESSEPDTPLVRLGWNKQDPR 143 (253)
Q Consensus 81 ------------~~~~~~~v~~~~-~~--~~~~l~~~~~dg~i~i~d~~~~~~-~-~~~~~~~~~~~~i~~~~~~~~~~~ 143 (253)
.......+...+ -. .+...+.......|.+|....... . ....+..- ...+.+++|. ++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~---~~ 149 (275)
T PF00780_consen 74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL---GN 149 (275)
T ss_pred cccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe---CC
Confidence 011223455555 11 344444444555899998876421 1 22222222 2488899997 45
Q ss_pred EEEEEEeCCCeEEEEECCCCC
Q 035558 144 YMATIIMDSAKVVVLDIRFPT 164 (253)
Q Consensus 144 ~l~~~~~~~~~i~~~d~~~~~ 164 (253)
.++++..++ ..+.|+.+..
T Consensus 150 ~i~v~~~~~--f~~idl~~~~ 168 (275)
T PF00780_consen 150 KICVGTSKG--FYLIDLNTGS 168 (275)
T ss_pred EEEEEeCCc--eEEEecCCCC
Confidence 666666444 8889998644
No 388
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.79 E-value=0.15 Score=38.61 Aligned_cols=197 Identities=13% Similarity=0.127 Sum_probs=108.9
Q ss_pred CCCCceEEeecC---cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC-----CeEEEEecc
Q 035558 2 CQKPDLLATSSD---FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID-----TTCTIWDIE 73 (253)
Q Consensus 2 p~~~~~l~~~~~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~ 73 (253)
|..+.-++.+-. ...++|.+.. +...++...+...| .-.=.|| +++.+|...-.| |.|-|||.+
T Consensus 77 p~~~ravafARrPGtf~~vfD~~~~----~~pv~~~s~~~RHf---yGHGvfs-~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 77 PALPRAVAFARRPGTFAMVFDPNGA----QEPVTLVSQEGRHF---YGHGVFS-PDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred CCCcceEEEEecCCceEEEECCCCC----cCcEEEecccCcee---ecccccC-CCCcEEEeecCCCCCCCceEEEEecc
Confidence 555566666654 6778888776 33333322221111 1122477 889988866433 689999987
Q ss_pred Cc-eeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEE--------EcCCCCCeeeeec-----------c--CCCCC
Q 035558 74 RE-AVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVF--------DLRDKEHSTIIYE-----------S--SEPDT 130 (253)
Q Consensus 74 ~~-~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~--------d~~~~~~~~~~~~-----------~--~~~~~ 130 (253)
.+ +.+..+..|.-....+.+. |++.++.+. |-|... ++.+.++...+.. . ..+.-
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~l 226 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQL 226 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhc
Confidence 44 3566777888778889999 999888764 333333 2222222111111 0 11223
Q ss_pred CeeEEEeeCCCCCEEEEEEeCCCe---EEEEECCCCCCCeeeec-------ccccceeEEEEecCCCCeEEEecCCCcEE
Q 035558 131 PLVRLGWNKQDPRYMATIIMDSAK---VVVLDIRFPTLPVVELQ-------RHQASVNAIAWAPHSSCHICTAGDDSQAL 200 (253)
Q Consensus 131 ~i~~~~~~~~~~~~l~~~~~~~~~---i~~~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 200 (253)
.|..++..+ ++..+..+-+.|.. --+.-.....+++..+. .-...|-+++.+.+.....+|+=..+...
T Consensus 227 SiRHld~g~-dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v 305 (366)
T COG3490 227 SIRHLDIGR-DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV 305 (366)
T ss_pred ceeeeeeCC-CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence 677777776 66666655444320 00111111112222222 12346778888876543445555777888
Q ss_pred EEeccCCCC
Q 035558 201 IWDLSSMGQ 209 (253)
Q Consensus 201 iwd~~~~~~ 209 (253)
+||..++..
T Consensus 306 i~da~tG~v 314 (366)
T COG3490 306 IWDAATGAV 314 (366)
T ss_pred EEEcCCCcE
Confidence 999999874
No 389
>PHA02713 hypothetical protein; Provisional
Probab=96.74 E-value=0.059 Score=45.71 Aligned_cols=93 Identities=6% Similarity=0.002 Sum_probs=51.4
Q ss_pred eEEEEeccCcee--eeeeecccccEEEEEecCCCeEEEEeCCC------cEEEEEcCC-CCCeeeeeccCCCCCCeeEEE
Q 035558 66 TCTIWDIEREAV--DTQLIAHDKEVYDIAWGGVGVFASVSADG------SVRVFDLRD-KEHSTIIYESSEPDTPLVRLG 136 (253)
Q Consensus 66 ~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~l~~~~~dg------~i~i~d~~~-~~~~~~~~~~~~~~~~i~~~~ 136 (253)
.+..||.++.+- +..+...... .+++..++.+.+.|+.++ .+..||.++ ++ ...+...+........+.
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~-~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~-W~~~~~m~~~r~~~~~~~ 510 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIR-PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG-WELITTTESRLSALHTIL 510 (557)
T ss_pred eEEEECCCCCeEeecCCCCccccc-CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCC-eeEccccCcccccceeEE
Confidence 477788877652 2222211111 122222677777777542 467899887 43 233333333222222233
Q ss_pred eeCCCCCEEEEEEeCC--CeEEEEECCCCC
Q 035558 137 WNKQDPRYMATIIMDS--AKVVVLDIRFPT 164 (253)
Q Consensus 137 ~~~~~~~~l~~~~~~~--~~i~~~d~~~~~ 164 (253)
+ ++.+.++|+.++ . +..||..+.+
T Consensus 511 ~---~~~iyv~Gg~~~~~~-~e~yd~~~~~ 536 (557)
T PHA02713 511 H---DNTIMMLHCYESYML-QDTFNVYTYE 536 (557)
T ss_pred E---CCEEEEEeeecceee-hhhcCccccc
Confidence 3 778889998887 4 7778877654
No 390
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.73 E-value=0.16 Score=38.22 Aligned_cols=175 Identities=12% Similarity=0.073 Sum_probs=95.3
Q ss_pred CCceEEeecC----cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558 4 KPDLLATSSD----FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT 79 (253)
Q Consensus 4 ~~~~l~~~~~----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 79 (253)
++.++-+++. .|+.+|+.++ +......-.. .-|.. .++.. +..+..-.=.++...+||..+.+.+.
T Consensus 55 ~g~LyESTG~yG~S~l~~~d~~tg----~~~~~~~l~~-~~FgE---Git~~--~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 55 DGTLYESTGLYGQSSLRKVDLETG----KVLQSVPLPP-RYFGE---GITIL--GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp TTEEEEEECSTTEEEEEEEETTTS----SEEEEEE-TT-T--EE---EEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CCEEEEeCCCCCcEEEEEEECCCC----cEEEEEECCc-cccce---eEEEE--CCEEEEEEecCCeEEEEccccceEEE
Confidence 4556666552 8999999986 4443332221 11112 33443 34444455578999999999998888
Q ss_pred eeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeecc--CCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558 80 QLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYES--SEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV 157 (253)
Q Consensus 80 ~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~ 157 (253)
++. ..+.=+.++. +++.|+.......++.+|..+-+....+... ...-..++.+.|. ++.+.|=.=.... |..
T Consensus 125 ~~~-y~~EGWGLt~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~-I~~ 199 (264)
T PF05096_consen 125 TFP-YPGEGWGLTS-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDR-IVR 199 (264)
T ss_dssp EEE--SSS--EEEE-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSE-EEE
T ss_pred EEe-cCCcceEEEc-CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCe-EEE
Confidence 876 3456677775 4666666666778999998876644433321 1122356667775 3443333222333 555
Q ss_pred EECCCCCCCeeee---------------cccccceeEEEEecCCCCeEEEec
Q 035558 158 LDIRFPTLPVVEL---------------QRHQASVNAIAWAPHSSCHICTAG 194 (253)
Q Consensus 158 ~d~~~~~~~~~~~---------------~~~~~~i~~~~~~~~~~~~l~~~~ 194 (253)
.|..++.. +..+ .....-.+.+|+.|..+++++||-
T Consensus 200 Idp~tG~V-~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 200 IDPETGKV-VGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EETTT-BE-EEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EeCCCCeE-EEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 56555431 1111 011356899999998877777775
No 391
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=96.73 E-value=0.13 Score=37.22 Aligned_cols=149 Identities=15% Similarity=0.224 Sum_probs=85.7
Q ss_pred CeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC-----eEEEE-ECCCC---CCCe
Q 035558 97 GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA-----KVVVL-DIRFP---TLPV 167 (253)
Q Consensus 97 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~-----~i~~~-d~~~~---~~~~ 167 (253)
+.|..+...+.|.+|++.+.... .+..... -+.|..+.++. .|+++++--.+.. .+++| +.+.. ..++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~-~~~~F~T-v~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECP-LLCTFST-VGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCc-eeEEEcc-hhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 55555566788999999944432 2222222 24899999999 8999998765442 25655 22221 1222
Q ss_pred e-eeccc---------------------ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCC-----CCCCCeee
Q 035558 168 V-ELQRH---------------------QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVE-----GGLDPILA 220 (253)
Q Consensus 168 ~-~~~~~---------------------~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~ 220 (253)
. ++.+| ..++.+++.+|-.+ -|+.|+ ++++.+|.+........ .-+.....
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG-~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~ 183 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTG-NLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLID 183 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCC-CEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhh
Confidence 1 22221 34677888888664 455555 56889998876443110 00000011
Q ss_pred ccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 221 YTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 221 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
..-+-.+..+++..+ ++|..++..+++++|
T Consensus 184 ~~~~~~p~~v~ic~~---yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 184 HIDNFKPTQVAICEG---YIAVMSDLEVLVLKL 213 (215)
T ss_pred eecCceEEEEEEEee---EEEEecCCEEEEEEE
Confidence 111334567777643 778888888998875
No 392
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.72 E-value=0.19 Score=39.16 Aligned_cols=137 Identities=13% Similarity=0.129 Sum_probs=81.5
Q ss_pred CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEe----------CCCcEEEEEcCCCCCeeeeeccCCCC----
Q 035558 65 TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVS----------ADGSVRVFDLRDKEHSTIIYESSEPD---- 129 (253)
Q Consensus 65 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~---- 129 (253)
+.++++|..+++.+..+.. +-.-.+..+ +++.+++++ ..-.|.+||..+-.....+..+.++.
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999998887776653 222335566 777777643 34569999999886544443333211
Q ss_pred CCeeEEEeeCCCCCEEEEEEeCC-CeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558 130 TPLVRLGWNKQDPRYMATIIMDS-AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 130 ~~i~~~~~~~~~~~~l~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
.....++++. +++++++....- .+|.|.|+...+. +.++.. ..+..+ -|.++.-+.+-+.||++.-..+....
T Consensus 95 ~~~~~~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kv-v~ei~~--PGC~~i--yP~~~~~F~~lC~DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 95 PYKNMFALSA-DGKFLYVQNFTPATSVTVVDLAAKKV-VGEIDT--PGCWLI--YPSGNRGFSMLCGDGSLLTVTLDADG 168 (342)
T ss_dssp --GGGEEE-T-TSSEEEEEEESSSEEEEEEETTTTEE-EEEEEG--TSEEEE--EEEETTEEEEEETTSCEEEEEETSTS
T ss_pred ccccceEEcc-CCcEEEEEccCCCCeEEEEECCCCce-eeeecC--CCEEEE--EecCCCceEEEecCCceEEEEECCCC
Confidence 1334467777 777777665433 2488888887543 444432 122222 24443467777889999988887544
Q ss_pred C
Q 035558 209 Q 209 (253)
Q Consensus 209 ~ 209 (253)
+
T Consensus 169 k 169 (342)
T PF06433_consen 169 K 169 (342)
T ss_dssp S
T ss_pred C
Confidence 3
No 393
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.70 E-value=0.011 Score=30.59 Aligned_cols=32 Identities=13% Similarity=0.076 Sum_probs=25.7
Q ss_pred CCeeEEEeeCCCC--CEEEEEEeCCCeEEEEECCC
Q 035558 130 TPLVRLGWNKQDP--RYMATIIMDSAKVVVLDIRF 162 (253)
Q Consensus 130 ~~i~~~~~~~~~~--~~l~~~~~~~~~i~~~d~~~ 162 (253)
+.+.+++|+|..+ ++|+.+...+. |.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEccc
Confidence 3688999998555 67887777777 99999995
No 394
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.70 E-value=0.29 Score=40.94 Aligned_cols=152 Identities=11% Similarity=0.051 Sum_probs=79.9
Q ss_pred CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCee-EEEecCCCCCEEEEEe---------CCCeEEEEecc
Q 035558 5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLT-SFDWNEAEPRRIGTSS---------IDTTCTIWDIE 73 (253)
Q Consensus 5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~---------~dg~i~vwd~~ 73 (253)
+.+++...+ .|..+|.+++ +.+...+..........+. +..+. +..++.++ .+|.+..+|.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG----~~~W~~~~~~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~ 183 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETG----KQVWKFGNNDQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVE 183 (488)
T ss_pred CeEEEecCCCeEEEEECCCC----CEeeeecCCCCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECC
Confidence 344444445 8999999887 5555544332100000011 11121 24455554 36789999999
Q ss_pred Cceeeeeeecccc--------------------cEE-EEEec-CCCeEEEEeCCC------------------cEEEEEc
Q 035558 74 REAVDTQLIAHDK--------------------EVY-DIAWG-GVGVFASVSADG------------------SVRVFDL 113 (253)
Q Consensus 74 ~~~~~~~~~~~~~--------------------~v~-~~~~~-~~~~l~~~~~dg------------------~i~i~d~ 113 (253)
+++.+..++.... .+. ..++. .+..++.++.++ .|.-+|.
T Consensus 184 TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~ 263 (488)
T cd00216 184 TGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDA 263 (488)
T ss_pred CCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcC
Confidence 9987776653211 011 12333 356777777665 6889999
Q ss_pred CCCCCeeeeeccCCCCC----CeeEEEee---CCCCC---EEEEEEeCCCeEEEEECCCCCC
Q 035558 114 RDKEHSTIIYESSEPDT----PLVRLGWN---KQDPR---YMATIIMDSAKVVVLDIRFPTL 165 (253)
Q Consensus 114 ~~~~~~~~~~~~~~~~~----~i~~~~~~---~~~~~---~l~~~~~~~~~i~~~d~~~~~~ 165 (253)
++++..-.... ..+.. ......+. ..++. .+++++.+|. +...|.++++.
T Consensus 264 ~tG~~~W~~~~-~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~-l~ald~~tG~~ 323 (488)
T cd00216 264 DTGKVKWFYQT-TPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGF-FYVLDRTTGKL 323 (488)
T ss_pred CCCCEEEEeeC-CCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCce-EEEEECCCCcE
Confidence 98874322211 11100 00000111 11232 5677777887 99999998764
No 395
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.07 Score=47.57 Aligned_cols=147 Identities=18% Similarity=0.170 Sum_probs=88.5
Q ss_pred cEEEEEec-CCCe--EEEEeCCCcEEEEEcCCCCCeee-----e---eccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558 87 EVYDIAWG-GVGV--FASVSADGSVRVFDLRDKEHSTI-----I---YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV 155 (253)
Q Consensus 87 ~v~~~~~~-~~~~--l~~~~~dg~i~i~d~~~~~~~~~-----~---~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i 155 (253)
++..+... +... ++..+.+-.|..||+++-..... + ...........++.|+|.-....++...|.. |
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls-l 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS-L 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc-h
Confidence 34444444 5443 33344455799999986432110 0 0111122255678899865666777777777 8
Q ss_pred EEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC
Q 035558 156 VVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS 235 (253)
Q Consensus 156 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 235 (253)
.+..+......+..+. -....++++|+|.| +.++.|-..|++.-|...-..+.. ....| . .....|.+|.|-..
T Consensus 181 ~V~~~~~~~~~v~s~p-~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~leik~~-ip~Pp-~--~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFP-VTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSLEIKSE-IPEPP-V--EENYRVLSVTWLST 254 (1405)
T ss_pred hhhhhhhhhhhhcccC-cccceeeEEecccc-ceeeEecCCCeEEEeecccceeec-ccCCC-c--CCCcceeEEEEecc
Confidence 8877765443233322 35678999999999 699999999999999665432111 00111 1 12678999999877
Q ss_pred CCceE
Q 035558 236 QPDWV 240 (253)
Q Consensus 236 ~~~~~ 240 (253)
...++
T Consensus 255 ~eflv 259 (1405)
T KOG3630|consen 255 QEFLV 259 (1405)
T ss_pred eeEEE
Confidence 65444
No 396
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.53 E-value=0.27 Score=42.90 Aligned_cols=79 Identities=18% Similarity=0.305 Sum_probs=55.2
Q ss_pred CCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCC----------CC--Ceeee--------cccccceeEEEEecCC--C
Q 035558 130 TPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFP----------TL--PVVEL--------QRHQASVNAIAWAPHS--S 187 (253)
Q Consensus 130 ~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~----------~~--~~~~~--------~~~~~~i~~~~~~~~~--~ 187 (253)
-.|..+.++| +|.+++..|..+ |.|..+... +. ....+ ..+...|..+.|+|.+ +
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~--v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRG--VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCc--EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 3788999999 999999988866 555555321 10 01111 1234578899999974 2
Q ss_pred CeEEEecCCCcEEEEeccCCCCCC
Q 035558 188 CHICTAGDDSQALIWDLSSMGQPV 211 (253)
Q Consensus 188 ~~l~~~~~dg~i~iwd~~~~~~~~ 211 (253)
..|+.-..|+++|+||+.....+.
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~~~p~ 185 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDPQHPW 185 (717)
T ss_pred CeEEEEecCCEEEEEecCCCCCCe
Confidence 588888899999999998766543
No 397
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=0.43 Score=40.97 Aligned_cols=179 Identities=11% Similarity=0.156 Sum_probs=89.2
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee--e--ecccccEE
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ--L--IAHDKEVY 89 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~--~~~~~~v~ 89 (253)
.|+||+... +++..+.-.. .++..+.|+ .+. .|+....+|++++|++-... +.. . ......|.
T Consensus 65 ~I~If~~sG-----~lL~~~~w~~-----~~lI~mgWs-~~e-eLI~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ 131 (829)
T KOG2280|consen 65 YIRIFNISG-----QLLGRILWKH-----GELIGMGWS-DDE-ELICVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIV 131 (829)
T ss_pred eEEEEeccc-----cchHHHHhcC-----CCeeeeccc-CCc-eEEEEeccceEEEeecchhh-hcccccccccccCcee
Confidence 477888776 4444433332 467899998 544 45566799999999986332 222 1 12223454
Q ss_pred EEEec-CCCeEEEEeCCCcEEE-EEcCCCCCeeeeeccCCCCCCeeEEEe-eCCC-CCEEEEEEeCCCeEEEEECCCCCC
Q 035558 90 DIAWG-GVGVFASVSADGSVRV-FDLRDKEHSTIIYESSEPDTPLVRLGW-NKQD-PRYMATIIMDSAKVVVLDIRFPTL 165 (253)
Q Consensus 90 ~~~~~-~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~-~~~l~~~~~~~~~i~~~d~~~~~~ 165 (253)
...+. +|=.+++. +|.+.+ -+..... .......+....+..|-.. .|.. ...++-....-. ..++-......
T Consensus 132 ec~~f~~GVavlt~--~g~v~~i~~~~~~~-~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~ 207 (829)
T KOG2280|consen 132 ECRFFHNGVAVLTV--SGQVILINGVEEPK-LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRV 207 (829)
T ss_pred EEEEecCceEEEec--CCcEEEEcCCCcch-hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccc
Confidence 44444 44333333 344433 3333322 1111111122112122222 2211 112221111111 22333332222
Q ss_pred CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCC
Q 035558 166 PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQP 210 (253)
Q Consensus 166 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 210 (253)
....+......+..+..+|+. ++|+--..+|.|.+-+....+..
T Consensus 208 q~~~~~~~~~~~~ki~VS~n~-~~laLyt~~G~i~~vs~D~~~~l 251 (829)
T KOG2280|consen 208 QLHALSWPNSSVVKISVSPNR-RFLALYTETGKIWVVSIDLSQIL 251 (829)
T ss_pred cccccCCCCceEEEEEEcCCc-ceEEEEecCCcEEEEecchhhhh
Confidence 223333334567889999998 69998889999999888765543
No 398
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.44 E-value=0.22 Score=42.42 Aligned_cols=112 Identities=18% Similarity=0.184 Sum_probs=68.8
Q ss_pred eeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee-cccccEEEEEec---CCCeEEEEeCCCcEEEEEcCC-----
Q 035558 45 LTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI-AHDKEVYDIAWG---GVGVFASVSADGSVRVFDLRD----- 115 (253)
Q Consensus 45 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~---~~~~l~~~~~dg~i~i~d~~~----- 115 (253)
..-+.-+ ..+...++-+....+.|||.+.+.....-. ...+.|.++.|. +++.+++.+....|.++--..
T Consensus 32 ~~li~gs-s~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 32 PSLISGS-SIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred cceEeec-ccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 3344444 333333333344579999999876443322 457899999998 888899999999999985421
Q ss_pred CC----CeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558 116 KE----HSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR 161 (253)
Q Consensus 116 ~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~ 161 (253)
.. ..+.+........+|.+..|.+ +|.+++.++ +. +.++|-.
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~sG--Nq-lfv~dk~ 156 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGSG--NQ-LFVFDKW 156 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEec-CCeEEEEeC--CE-EEEECCC
Confidence 11 1122211122224788999997 776655443 22 8888753
No 399
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.12 Score=41.61 Aligned_cols=141 Identities=8% Similarity=0.086 Sum_probs=88.4
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC---
Q 035558 89 YDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL--- 165 (253)
Q Consensus 89 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~--- 165 (253)
+.+-|.|.+..+.+-..|.+.-|-......-.++......+++|.++.|++ |.+.+|+--.+.. |.+++....+.
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSl-DnkilAVQR~~~~-v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSL-DNKILAVQRTSKT-VDFCNFIPDNSQLE 103 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEecc-CcceEEEEecCce-EEEEecCCCchhhH
Confidence 334455444444555556677777665543333333344566999999999 8899998877777 99998743221
Q ss_pred CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE
Q 035558 166 PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 240 (253)
Q Consensus 166 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 240 (253)
...+-+..+..|.+..|..+. -++.-+. .-+-+|.+....... .....|...|+--.|.++.+.++
T Consensus 104 ~~~~ck~k~~~IlGF~W~~s~--e~A~i~~-~G~e~y~v~pekrsl------RlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 104 YTQECKTKNANILGFCWTSST--EIAFITD-QGIEFYQVLPEKRSL------RLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred HHHHhccCcceeEEEEEecCe--eEEEEec-CCeEEEEEchhhhhh------hhhhhcccCccEEEEccccceEe
Confidence 112223334568899998875 4555443 346777766544332 35556778888888888876444
No 400
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.38 E-value=0.29 Score=37.08 Aligned_cols=103 Identities=14% Similarity=0.049 Sum_probs=72.0
Q ss_pred CeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc-cccceeEEEEecCCCCeEEEecC-----CCcEEEEec
Q 035558 131 PLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR-HQASVNAIAWAPHSSCHICTAGD-----DSQALIWDL 204 (253)
Q Consensus 131 ~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~-----dg~i~iwd~ 204 (253)
....++|+|..+.-++.+-.-|+...++|.....+++..... .....-.-.|+|+| .+|+..-. -|.|-|||.
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG-~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDG-RLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCC-cEEEeecCCCCCCCceEEEEec
Confidence 344688999778888888888888899999887764432211 11122234799999 57765543 388999999
Q ss_pred cCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE
Q 035558 205 SSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 240 (253)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 240 (253)
+..-... -....|.-....+.|.+||+.++
T Consensus 148 r~~fqrv------gE~~t~GiGpHev~lm~DGrtlv 177 (366)
T COG3490 148 REGFQRV------GEFSTHGIGPHEVTLMADGRTLV 177 (366)
T ss_pred cccccee------cccccCCcCcceeEEecCCcEEE
Confidence 8654332 35567788888999999998544
No 401
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.37 E-value=0.29 Score=37.01 Aligned_cols=150 Identities=17% Similarity=0.133 Sum_probs=82.2
Q ss_pred cEEEEEec-CCCeEEEEe-CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE-CCCC
Q 035558 87 EVYDIAWG-GVGVFASVS-ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD-IRFP 163 (253)
Q Consensus 87 ~v~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d-~~~~ 163 (253)
.+.+.+.+ +++.++... .++.-.+|-...+....... ....+..-.|++ ++...++...+.. ..++. ....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~----~g~~l~~PS~d~-~g~~W~v~~~~~~-~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL----TGGSLTRPSWDP-DGWVWTVDDGSGG-VRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec----cCCccccccccC-CCCEEEEEcCCCc-eEEEEecCCC
Confidence 67888999 888776655 23333344334333222322 112677778999 6776666665555 56653 2332
Q ss_pred CCCeeeeccc--ccceeEEEEecCCCCeEEEe--cCCCcEEEEeccCCCC--CCCCCCCCeeeccCCCceeEEEEcCCCC
Q 035558 164 TLPVVELQRH--QASVNAIAWAPHSSCHICTA--GDDSQALIWDLSSMGQ--PVEGGLDPILAYTAGAEIEQLQWSSSQP 237 (253)
Q Consensus 164 ~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 237 (253)
.......... ...|..+.++|||.+..+.. ..++.|.+=-+..... +................+.+++|.+++.
T Consensus 99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence 2111222211 12899999999995443333 2457777776553321 1100011112223467899999999987
Q ss_pred ceEEE
Q 035558 238 DWVAI 242 (253)
Q Consensus 238 ~~~~~ 242 (253)
.++..
T Consensus 179 L~V~~ 183 (253)
T PF10647_consen 179 LVVLG 183 (253)
T ss_pred EEEEe
Confidence 44443
No 402
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.24 E-value=0.032 Score=28.92 Aligned_cols=32 Identities=9% Similarity=0.123 Sum_probs=26.9
Q ss_pred CCeeEEEecCCCC--CEEEEEeCCCeEEEEeccC
Q 035558 43 GPLTSFDWNEAEP--RRIGTSSIDTTCTIWDIER 74 (253)
Q Consensus 43 ~~v~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~ 74 (253)
++|.++.|+|..+ ++|+-+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3688999996566 7888888889999999985
No 403
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.18 E-value=0.71 Score=39.56 Aligned_cols=184 Identities=14% Similarity=0.162 Sum_probs=97.6
Q ss_pred CCeeEEEecCCCCCEEEEEe------CCC--eEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCC--------
Q 035558 43 GPLTSFDWNEAEPRRIGTSS------IDT--TCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSAD-------- 105 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~------~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d-------- 105 (253)
..+.+.+++ ++++.++... .|. .|.+++.. +.......+ ...+.-.|+ +++.+.+....
T Consensus 350 ~~vsspaiS-pdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALS-RSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceEC-CCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEec
Confidence 356788899 7888776654 233 45555542 222222222 236777888 87777766533
Q ss_pred ----CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE---EECCCCCCCe---eeecc-cc
Q 035558 106 ----GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV---LDIRFPTLPV---VELQR-HQ 174 (253)
Q Consensus 106 ----g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~---~d~~~~~~~~---~~~~~-~~ 174 (253)
+.+.+.+++.+.... ...+.|..+.|+| ++..++... ++. |++ -....+...+ ..+.. -.
T Consensus 426 ~~~~gql~~~~vd~ge~~~------~~~g~Issl~wSp-DG~RiA~i~-~g~-v~Va~Vvr~~~G~~~l~~~~~l~~~l~ 496 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS------RVPGPISELQLSR-DGVRAAMII-GGK-VYLAVVEQTEDGQYALTNPREVGPGLG 496 (591)
T ss_pred cCCCceEEEEeccCchhhh------ccCCCcCeEEECC-CCCEEEEEE-CCE-EEEEEEEeCCCCceeecccEEeecccC
Confidence 223222333322110 2234799999999 888887765 354 766 3322222111 11222 22
Q ss_pred cceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCc
Q 035558 175 ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTK 247 (253)
Q Consensus 175 ~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 247 (253)
..+.++.|.+++ . |+++..++.-.+|.+.-..... ..........++.+|+=++. .++....++.
T Consensus 497 ~~~~~l~W~~~~-~-L~V~~~~~~~~v~~v~vDG~~~----~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~ 561 (591)
T PRK13616 497 DTAVSLDWRTGD-S-LVVGRSDPEHPVWYVNLDGSNS----DALPSRNLSAPVVAVAASPS--TVYVTDARAV 561 (591)
T ss_pred CccccceEecCC-E-EEEEecCCCCceEEEecCCccc----cccCCCCccCceEEEecCCc--eEEEEcCCce
Confidence 346889999998 4 4455555555666654332211 00011123567777877764 3555444543
No 404
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.3 Score=39.49 Aligned_cols=155 Identities=9% Similarity=0.124 Sum_probs=94.7
Q ss_pred eEEEecCCCCCEEEEEeCCCeEEEEeccCce--eeeee-ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeee
Q 035558 46 TSFDWNEAEPRRIGTSSIDTTCTIWDIEREA--VDTQL-IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTI 121 (253)
Q Consensus 46 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~-~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~ 121 (253)
+.+-|. +.+..+.+...|-+.-|-+.... ..-.+ ...+++|.++.|+ |.+.+|.--.|++|.+++....+....
T Consensus 26 ngvFfD--DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 26 NGVFFD--DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred cceeec--cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence 455565 33333333344556666654332 11122 2356799999999 999999999999999999854432222
Q ss_pred e-eccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEec-CCCcE
Q 035558 122 I-YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAG-DDSQA 199 (253)
Q Consensus 122 ~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i 199 (253)
. .........|..+.|.. ..-+|.....| +-+|-.......+...+.|...|+=..|+++-.-.|++.+ ..+++
T Consensus 104 ~~~~ck~k~~~IlGF~W~~--s~e~A~i~~~G--~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~l 179 (657)
T KOG2377|consen 104 YTQECKTKNANILGFCWTS--STEIAFITDQG--IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVL 179 (657)
T ss_pred HHHHhccCcceeEEEEEec--CeeEEEEecCC--eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecccccccc
Confidence 1 12222333588889985 35666655555 7777766555556777778888888889988732333333 45555
Q ss_pred EEEeccC
Q 035558 200 LIWDLSS 206 (253)
Q Consensus 200 ~iwd~~~ 206 (253)
.=+.++.
T Consensus 180 npf~~~~ 186 (657)
T KOG2377|consen 180 NPFHFRA 186 (657)
T ss_pred ccEEEee
Confidence 4444443
No 405
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.11 E-value=0.46 Score=40.53 Aligned_cols=148 Identities=13% Similarity=0.079 Sum_probs=83.3
Q ss_pred CCCCEEEEEeCCC------eEEEEeccCceee--eeeecccccEEEEEecCCCeEEEEeCC------CcEEEEEcCCCCC
Q 035558 53 AEPRRIGTSSIDT------TCTIWDIEREAVD--TQLIAHDKEVYDIAWGGVGVFASVSAD------GSVRVFDLRDKEH 118 (253)
Q Consensus 53 ~~~~~l~~~~~dg------~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~ 118 (253)
..+.+++.|+.++ .+..+|..+++-. ..+. ....-.+++..++.+.++|+.| ..+..||.++++-
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEECCEEEEEccccCCCcccceEEEecCCCCce
Confidence 3466777777763 6778888877422 2232 2223344444477889999998 3577888888762
Q ss_pred eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC----eEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEEe
Q 035558 119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA----KVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICTA 193 (253)
Q Consensus 119 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~----~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 193 (253)
..+..............+ ++.+.|+||.+|. ++-.||.++.+- .+..+.. ...+.+...-+.++.++|
T Consensus 362 -~~~a~M~~~R~~~~v~~l---~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~---~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 362 -TPVAPMNTKRSDFGVAVL---DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT---RRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred -eccCCccCccccceeEEE---CCEEEEEeccccccccccEEEecCCCCcccccCCCCc---ceeeeEEEEECCEEEEEc
Confidence 222222222111111222 7888999998863 377888876541 1222221 222222222222577778
Q ss_pred cCC------CcEEEEeccCCC
Q 035558 194 GDD------SQALIWDLSSMG 208 (253)
Q Consensus 194 ~~d------g~i~iwd~~~~~ 208 (253)
|.| .++..||..+..
T Consensus 435 G~~~~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNT 455 (571)
T ss_pred CcCCCccccceEEEEcCCCCc
Confidence 755 356778887765
No 406
>PHA03098 kelch-like protein; Provisional
Probab=96.02 E-value=0.71 Score=39.15 Aligned_cols=147 Identities=6% Similarity=-0.047 Sum_probs=70.9
Q ss_pred CCCEEEEEeCCC------eEEEEeccCceeee--eeecccccEEEEEecCCCeEEEEeCC-----CcEEEEEcCCCCCee
Q 035558 54 EPRRIGTSSIDT------TCTIWDIEREAVDT--QLIAHDKEVYDIAWGGVGVFASVSAD-----GSVRVFDLRDKEHST 120 (253)
Q Consensus 54 ~~~~l~~~~~dg------~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~ 120 (253)
++..++.|+.++ .+..||..+.+-.. .+....... +++..++.+++.||.+ ..+..||..+.+-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~- 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWR- 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEEECCEEEEEeCCCCCEecceEEEEcCCCCcee-
Confidence 355666666542 46778877665322 111111111 2222267788888865 34777888766421
Q ss_pred eeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC-----CeEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEEec
Q 035558 121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDS-----AKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICTAG 194 (253)
Q Consensus 121 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-----~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 194 (253)
.....+...... +++.. ++.+.+.||... ..+..||..+..- .+..+...... .+++. .++ ++++.|+
T Consensus 372 ~~~~lp~~r~~~-~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~-~~~-~iyv~GG 445 (534)
T PHA03098 372 EEPPLIFPRYNP-CVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIY-HDG-KIYVIGG 445 (534)
T ss_pred eCCCcCcCCccc-eEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEE-ECC-EEEEECC
Confidence 111111111111 12222 567777777421 2388899876431 11111111111 12222 234 4666676
Q ss_pred CC--------CcEEEEeccCCC
Q 035558 195 DD--------SQALIWDLSSMG 208 (253)
Q Consensus 195 ~d--------g~i~iwd~~~~~ 208 (253)
.+ ..+.+||..+.+
T Consensus 446 ~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred ccCCCCCcccceEEEecCCCCc
Confidence 43 238888888765
No 407
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.94 E-value=0.49 Score=35.66 Aligned_cols=188 Identities=9% Similarity=-0.040 Sum_probs=101.0
Q ss_pred eeEEEecCCCCCEEEEEeCCC--eEEEEeccCceeeeeeecc-cccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeee
Q 035558 45 LTSFDWNEAEPRRIGTSSIDT--TCTIWDIEREAVDTQLIAH-DKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTI 121 (253)
Q Consensus 45 v~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 121 (253)
...+.|. .++.++-+.+.-| .|+.+|+.+++......-. .----.++..++..+.-.=.++...+||..+-+....
T Consensus 47 TQGL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFL-DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEE-ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEec-CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEE
Confidence 4577885 5677777777666 7999999999866544311 1111223333344444445688899999988764443
Q ss_pred eeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc--cc---cceeEEEEecCCCCeEEEecCC
Q 035558 122 IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR--HQ---ASVNAIAWAPHSSCHICTAGDD 196 (253)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~---~~i~~~~~~~~~~~~l~~~~~d 196 (253)
+.- . +.-+.++. ++..|+.+..... ++++|..+.+. ...+.- .. ..++-+.|- +| ...|=.=..
T Consensus 126 ~~y-~---~EGWGLt~---dg~~Li~SDGS~~-L~~~dP~~f~~-~~~i~V~~~g~pv~~LNELE~i-~G-~IyANVW~t 194 (264)
T PF05096_consen 126 FPY-P---GEGWGLTS---DGKRLIMSDGSSR-LYFLDPETFKE-VRTIQVTDNGRPVSNLNELEYI-NG-KIYANVWQT 194 (264)
T ss_dssp EE--S---SS--EEEE---CSSCEEEE-SSSE-EEEE-TTT-SE-EEEEE-EETTEE---EEEEEEE-TT-EEEEEETTS
T ss_pred Eec-C---CcceEEEc---CCCEEEEECCccc-eEEECCcccce-EEEEEEEECCEECCCcEeEEEE-cC-EEEEEeCCC
Confidence 322 1 23344552 6666776666666 99999877553 333321 11 235556665 34 344545555
Q ss_pred CcEEEEeccCCCCCCCCC--------CCCeeeccCCCceeEEEEcCCCCceEEEEc
Q 035558 197 SQALIWDLSSMGQPVEGG--------LDPILAYTAGAEIEQLQWSSSQPDWVAIAF 244 (253)
Q Consensus 197 g~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 244 (253)
..|...|..++....... ...........-.+.|||.|....++..|.
T Consensus 195 d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 195 DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 666666776665321000 000000112456899999998877766553
No 408
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.85 E-value=0.64 Score=36.24 Aligned_cols=182 Identities=10% Similarity=-0.026 Sum_probs=98.5
Q ss_pred CCceEEeecCcEEEEEccCCccccceeeee-cCCCCccccCCeeEEEecCCCCCEEEEEeC-----------CCeEEEEe
Q 035558 4 KPDLLATSSDFLRVWRISDEDRRVELKSLL-NGNKNSEYCGPLTSFDWNEAEPRRIGTSSI-----------DTTCTIWD 71 (253)
Q Consensus 4 ~~~~l~~~~~~v~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~i~vwd 71 (253)
.+..|+++...+.+++.+.+ ......... .+... ...+.+... +++.+.++... -|.|+.++
T Consensus 76 ~~g~Lv~~~~g~~~~~~~~~-~~~t~~~~~~~~~~~----~r~ND~~v~-pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~ 149 (307)
T COG3386 76 AGGRLIACEHGVRLLDPDTG-GKITLLAEPEDGLPL----NRPNDGVVD-PDGRIWFGDMGYFDLGKSEERPTGSLYRVD 149 (307)
T ss_pred CCCeEEEEccccEEEeccCC-ceeEEeccccCCCCc----CCCCceeEc-CCCCEEEeCCCccccCccccCCcceEEEEc
Confidence 34456666667777777553 110111111 11111 345566777 67776654433 12344444
Q ss_pred ccCceeeeeeecccccEEEEEec-CCCeEEEEeC-CCcEEEEEcCC--CCC--eeeeeccCCCCCCeeEEEeeCCCCCEE
Q 035558 72 IEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSA-DGSVRVFDLRD--KEH--STIIYESSEPDTPLVRLGWNKQDPRYM 145 (253)
Q Consensus 72 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-dg~i~i~d~~~--~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l 145 (253)
. .+..+..+..+-..-+.|+|+ +++.++.+.. .+.|.-|++.. ... ...........+..-.++... ++++.
T Consensus 150 p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw 227 (307)
T COG3386 150 P-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLW 227 (307)
T ss_pred C-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEE
Confidence 3 355555555555566889999 8877666654 57888887763 110 011111112233445566666 77777
Q ss_pred EEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEec-CCCCeEEEecC
Q 035558 146 ATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAP-HSSCHICTAGD 195 (253)
Q Consensus 146 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~ 195 (253)
+++...+..|..|+.. ++ .+..+.-....+++++|-- +...+++|+..
T Consensus 228 ~~a~~~g~~v~~~~pd-G~-l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 228 VAAVWGGGRVVRFNPD-GK-LLGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred EecccCCceEEEECCC-Cc-EEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 6555554239999988 44 3555555446677777764 44334444443
No 409
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.83 E-value=0.64 Score=40.71 Aligned_cols=71 Identities=11% Similarity=0.246 Sum_probs=42.6
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccC----------cee---eeee--------ecccccEEEEEec----CCC
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER----------EAV---DTQL--------IAHDKEVYDIAWG----GVG 97 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~----------~~~---~~~~--------~~~~~~v~~~~~~----~~~ 97 (253)
-.|..|..| +++++++..+..|. .|..+-. ++. .+++ ..+...|..+.|+ ++.
T Consensus 85 f~v~~i~~n-~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLN-PTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEEC-CCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 367788899 89999988887664 3433321 110 0011 1223466677777 356
Q ss_pred eEEEEeCCCcEEEEEcCC
Q 035558 98 VFASVSADGSVRVFDLRD 115 (253)
Q Consensus 98 ~l~~~~~dg~i~i~d~~~ 115 (253)
.|+.-..|+++|+||+..
T Consensus 163 ~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISD 180 (717)
T ss_pred eEEEEecCCEEEEEecCC
Confidence 677777777777777753
No 410
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.81 E-value=0.0039 Score=53.65 Aligned_cols=98 Identities=18% Similarity=0.232 Sum_probs=58.5
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecC--CCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEE
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNE--AEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDI 91 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 91 (253)
.+.||+++--...+++...+ |....+...+.-+.|+| ++..++..+..++.|++....+... ..+++|...+.++
T Consensus 154 ~lfVy~vd~l~G~iq~~l~v--~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 154 ELFVYDVDVLQGEIQPQLEV--TPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDM 230 (1283)
T ss_pred hhheeehHhhccccccceEE--eecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccH
Confidence 56778876432222222222 22112224556677775 4567788888889998877654432 3445677666665
Q ss_pred Ee-----------c-CCCeEEEEeCCCcEEEEEcC
Q 035558 92 AW-----------G-GVGVFASVSADGSVRVFDLR 114 (253)
Q Consensus 92 ~~-----------~-~~~~l~~~~~dg~i~i~d~~ 114 (253)
+| + ||..|+.++.||.++.|.+.
T Consensus 231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred HHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 44 4 67777777888877777654
No 411
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.76 E-value=0.79 Score=36.62 Aligned_cols=153 Identities=14% Similarity=0.198 Sum_probs=74.6
Q ss_pred EecCCCCCEEEE-EeCCC--eEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeec
Q 035558 49 DWNEAEPRRIGT-SSIDT--TCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYE 124 (253)
Q Consensus 49 ~~~~~~~~~l~~-~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 124 (253)
+|. .+++.|+- +..|| .+++.|+++++..+--.+.........++ +++.++-......|+-.|+++.+.. .++.
T Consensus 42 ~ft-~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~-~vy~ 119 (386)
T PF14583_consen 42 CFT-DDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEER-VVYE 119 (386)
T ss_dssp -B--TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EE-EEEE
T ss_pred CcC-CCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEE-EEEE
Confidence 455 66755554 44444 67778898887665443322223344555 6666665656678899999998643 3443
Q ss_pred cCCCCCCeeEEEee-CCCCCEEEEEEeC---------------------CCeEEEEECCCCCCCeeeecccccceeEEEE
Q 035558 125 SSEPDTPLVRLGWN-KQDPRYMATIIMD---------------------SAKVVVLDIRFPTLPVVELQRHQASVNAIAW 182 (253)
Q Consensus 125 ~~~~~~~i~~~~~~-~~~~~~l~~~~~~---------------------~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~ 182 (253)
.+. ..+-...|. +.++..++-.-.. ...|.-.|+++++ ...+..-...+..+.|
T Consensus 120 ~p~--~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--~~~v~~~~~wlgH~~f 195 (386)
T PF14583_consen 120 VPD--DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--RKVVFEDTDWLGHVQF 195 (386)
T ss_dssp --T--TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS-EEEEEE
T ss_pred CCc--ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--eeEEEecCccccCccc
Confidence 332 244445554 2244444332110 0125555666544 3444444556788999
Q ss_pred ecCCCCeEEEecC---CCc-EEEEeccCC
Q 035558 183 APHSSCHICTAGD---DSQ-ALIWDLSSM 207 (253)
Q Consensus 183 ~~~~~~~l~~~~~---dg~-i~iwd~~~~ 207 (253)
+|..+.+|+-|-+ |.. -|||-+...
T Consensus 196 sP~dp~li~fCHEGpw~~Vd~RiW~i~~d 224 (386)
T PF14583_consen 196 SPTDPTLIMFCHEGPWDLVDQRIWTINTD 224 (386)
T ss_dssp ETTEEEEEEEEE-S-TTTSS-SEEEEETT
T ss_pred CCCCCCEEEEeccCCcceeceEEEEEEcC
Confidence 9988766666553 332 366766543
No 412
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.70 E-value=0.12 Score=46.23 Aligned_cols=114 Identities=12% Similarity=0.094 Sum_probs=75.9
Q ss_pred CeeEEEeeCCCCCEEEEEE-eCCCeEEEEECCCCCCCe----eeec------ccccceeEEEEecCCCCeEEEecCCCcE
Q 035558 131 PLVRLGWNKQDPRYMATII-MDSAKVVVLDIRFPTLPV----VELQ------RHQASVNAIAWAPHSSCHICTAGDDSQA 199 (253)
Q Consensus 131 ~i~~~~~~~~~~~~l~~~~-~~~~~i~~~d~~~~~~~~----~~~~------~~~~~i~~~~~~~~~~~~l~~~~~dg~i 199 (253)
++..+...+ +....++.. .+|..|..||+++..... .-+. .......++.|+|.-+...+....|+.|
T Consensus 102 pi~~~v~~~-D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFH-DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEecc-CCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 556666666 555544433 334458999998654211 1111 1223567789999876667788899999
Q ss_pred EEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 200 LIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 200 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
++..+....... .........++++|+|.|+.++.+-..|.+.-|.
T Consensus 181 ~V~~~~~~~~~v-------~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~ 226 (1405)
T KOG3630|consen 181 RVKSTKQLAQNV-------TSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYE 226 (1405)
T ss_pred hhhhhhhhhhhh-------cccCcccceeeEEeccccceeeEecCCCeEEEee
Confidence 998877654332 3345577889999999999888888888776553
No 413
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.62 E-value=1.2 Score=37.73 Aligned_cols=196 Identities=9% Similarity=-0.006 Sum_probs=104.2
Q ss_pred CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCe-------eEEEecCCCCCEEEEEeCCCeEEEEeccCc
Q 035558 4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPL-------TSFDWNEAEPRRIGTSSIDTTCTIWDIERE 75 (253)
Q Consensus 4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 75 (253)
++.+++++.+ .|.-.|..++ +.+..+........ .+. ..+++. +..++.++.|+.|.-.|.+++
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TG----k~lW~~~~~~~~~~-~~~~~~~~~~rg~av~---~~~v~v~t~dg~l~ALDa~TG 140 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTG----KELWKYDPKLPDDV-IPVMCCDVVNRGVALY---DGKVFFGTLDARLVALDAKTG 140 (527)
T ss_pred CCEEEEECCCCcEEEEECCCC----ceeeEecCCCCccc-ccccccccccccceEE---CCEEEEEcCCCEEEEEECCCC
Confidence 4445555555 8888898887 55544432110000 010 112222 356777888999999999999
Q ss_pred eeeeeeec--cc--ccEEEEEecCCCeEEEEe------CCCcEEEEEcCCCCCeeeeeccCCC-----------------
Q 035558 76 AVDTQLIA--HD--KEVYDIAWGGVGVFASVS------ADGSVRVFDLRDKEHSTIIYESSEP----------------- 128 (253)
Q Consensus 76 ~~~~~~~~--~~--~~v~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~----------------- 128 (253)
+.+..... +. ..+.+--.-.+..++.+. .+|.|..+|.++++..-........
T Consensus 141 k~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~ 220 (527)
T TIGR03075 141 KVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGA 220 (527)
T ss_pred CEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccccccc
Confidence 98765542 11 112111111233444443 2689999999988743222111110
Q ss_pred -----------CCCe-eEEEeeCCCCCEEEEEEeC-----C----------CeEEEEECCCCCCCeeeecc--ccc----
Q 035558 129 -----------DTPL-VRLGWNKQDPRYMATIIMD-----S----------AKVVVLDIRFPTLPVVELQR--HQA---- 175 (253)
Q Consensus 129 -----------~~~i-~~~~~~~~~~~~l~~~~~~-----~----------~~i~~~d~~~~~~~~~~~~~--~~~---- 175 (253)
...+ ..+++.| ...+++.+..+ + .+|.-.|+++++. .-.++. |..
T Consensus 221 ~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~-~W~~Q~~~~D~wD~d 298 (527)
T TIGR03075 221 KTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKI-KWHYQTTPHDEWDYD 298 (527)
T ss_pred CCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCE-EEeeeCCCCCCcccc
Confidence 0011 1246666 45555555422 1 1366778877663 333332 211
Q ss_pred ---ceeEEEEecCCC--CeEEEecCCCcEEEEeccCCCC
Q 035558 176 ---SVNAIAWAPHSS--CHICTAGDDSQALIWDLSSMGQ 209 (253)
Q Consensus 176 ---~i~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~ 209 (253)
...-+....+|. ..++.+..+|.+.+.|.++++.
T Consensus 299 ~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 299 GVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred CCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 111122324552 3788999999999999998864
No 414
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.57 E-value=0.82 Score=35.51 Aligned_cols=155 Identities=8% Similarity=0.057 Sum_probs=73.2
Q ss_pred cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558 83 AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR 161 (253)
Q Consensus 83 ~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~ 161 (253)
.-.+.+..+.-. ++.+++++.......-||--... ..+... .....|..|.|.| ++.+.+++ ..+. |++=+..
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-w~~~~r--~~~~riq~~gf~~-~~~lw~~~-~Gg~-~~~s~~~ 215 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-WQPHNR--NSSRRIQSMGFSP-DGNLWMLA-RGGQ-IQFSDDP 215 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE----SSS-EEEEEE-T-TS-EEEEE-TTTE-EEEEE-T
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc-ceEEcc--CccceehhceecC-CCCEEEEe-CCcE-EEEccCC
Confidence 345678888877 88888887766666677755432 112221 2234899999999 77776654 4444 7776622
Q ss_pred CC----CCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC
Q 035558 162 FP----TLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP 237 (253)
Q Consensus 162 ~~----~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 237 (253)
.. .+++..+....-.+..++|.+++ ...++|+ .|.+ +.....++.=. .......-...++.+.|.+..+
T Consensus 216 ~~~~~w~~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg-~G~l-~~S~DgGktW~----~~~~~~~~~~n~~~i~f~~~~~ 288 (302)
T PF14870_consen 216 DDGETWSEPIIPIKTNGYGILDLAYRPPN-EIWAVGG-SGTL-LVSTDGGKTWQ----KDRVGENVPSNLYRIVFVNPDK 288 (302)
T ss_dssp TEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS-E----E-GGGTTSSS---EEEEEETTE
T ss_pred CCccccccccCCcccCceeeEEEEecCCC-CEEEEeC-CccE-EEeCCCCccce----ECccccCCCCceEEEEEcCCCc
Confidence 11 11122222223357899999987 4666555 4543 33344443211 0001112355688888876654
Q ss_pred ceEEEEcCCcEEEE
Q 035558 238 DWVAIAFSTKLQIL 251 (253)
Q Consensus 238 ~~~~~~~~~~i~vw 251 (253)
-++.+.++.+--|
T Consensus 289 -gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 289 -GFVLGQDGVLLRY 301 (302)
T ss_dssp -EEEE-STTEEEEE
T ss_pred -eEEECCCcEEEEe
Confidence 5667777765433
No 415
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.41 E-value=0.87 Score=36.90 Aligned_cols=173 Identities=12% Similarity=0.067 Sum_probs=78.5
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe--------------------CCCeEEEEecc
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS--------------------IDTTCTIWDIE 73 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--------------------~dg~i~vwd~~ 73 (253)
.+.+.|-++- +.....+..... ..--..+.|. +..+.++|.. ...++.+||+.
T Consensus 158 gf~llD~~tf----~v~g~We~~~~~--~~~gYDfw~q-pr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~ 230 (461)
T PF05694_consen 158 GFVLLDGETF----EVKGRWEKDRGP--QPFGYDFWYQ-PRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWS 230 (461)
T ss_dssp EEEEE-TTT------EEEE--SB-TT--------EEEE-TTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETT
T ss_pred cEEEEcCccc----cccceeccCCCC--CCCCCCeEEc-CCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECC
Confidence 5566665542 444443332210 0223466777 5666666653 24579999999
Q ss_pred Cceeeeeeecc-c-ccEEEEEec-CCC---eEEEEeCCCcEEEEEc-CCCC--CeeeeeccCC----------------C
Q 035558 74 REAVDTQLIAH-D-KEVYDIAWG-GVG---VFASVSADGSVRVFDL-RDKE--HSTIIYESSE----------------P 128 (253)
Q Consensus 74 ~~~~~~~~~~~-~-~~v~~~~~~-~~~---~l~~~~~dg~i~i~d~-~~~~--~~~~~~~~~~----------------~ 128 (253)
+.+.++++.-- . ..+..+.|. +.. -|+.+-...+|..|-- +.++ ..+++..... -
T Consensus 231 ~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~ 310 (461)
T PF05694_consen 231 TRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAV 310 (461)
T ss_dssp TTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE
T ss_pred CCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccC
Confidence 99999988732 2 346678887 332 2333334445555533 3222 0111111100 0
Q ss_pred CCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc------------------cccceeEEEEecCCCCeE
Q 035558 129 DTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR------------------HQASVNAIAWAPHSSCHI 190 (253)
Q Consensus 129 ~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~------------------~~~~i~~~~~~~~~~~~l 190 (253)
..-|+.+..+. +.++|.++..-.+.|+.||+.....|...-+- -.+....+..|-||.++.
T Consensus 311 P~LitDI~iSl-DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlY 389 (461)
T PF05694_consen 311 PPLITDILISL-DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLY 389 (461)
T ss_dssp ------EEE-T-TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEE
T ss_pred CCceEeEEEcc-CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEE
Confidence 23578899998 88888888876666999999987765433210 112346678888885444
Q ss_pred EEec
Q 035558 191 CTAG 194 (253)
Q Consensus 191 ~~~~ 194 (253)
+|.|
T Consensus 390 vTnS 393 (461)
T PF05694_consen 390 VTNS 393 (461)
T ss_dssp EE--
T ss_pred EEee
Confidence 4544
No 416
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.26 E-value=0.5 Score=38.33 Aligned_cols=75 Identities=12% Similarity=0.029 Sum_probs=52.4
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEE-EEEec-C-C---------------C--eEEEE
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVY-DIAWG-G-V---------------G--VFASV 102 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~-~-~---------------~--~l~~~ 102 (253)
..+.+++.+ |++++.++...-|.|.++|+.++..++.+++..+.=. -+... . . . +++-+
T Consensus 308 R~~~~i~~s-P~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 308 REGESICLS-PSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred ceEEEEEEC-CCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 457889999 7788888888889999999999988887776543211 11111 1 1 1 33455
Q ss_pred eCCCcEEEEEcCCCCC
Q 035558 103 SADGSVRVFDLRDKEH 118 (253)
Q Consensus 103 ~~dg~i~i~d~~~~~~ 118 (253)
-.-|.|.+|.++++..
T Consensus 387 prRg~lEvW~~~~g~R 402 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPR 402 (415)
T ss_pred ccCCeEEEEecCCCCE
Confidence 6788899999888763
No 417
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.25 E-value=0.84 Score=33.68 Aligned_cols=100 Identities=11% Similarity=0.162 Sum_probs=64.0
Q ss_pred eEEEecCCCCCE-EEEEeCCCeEEEEe--ccCce-----eeeeeec----ccccEEEEEec-CCCeEEEEeCCCcEEEEE
Q 035558 46 TSFDWNEAEPRR-IGTSSIDTTCTIWD--IEREA-----VDTQLIA----HDKEVYDIAWG-GVGVFASVSADGSVRVFD 112 (253)
Q Consensus 46 ~~~~~~~~~~~~-l~~~~~dg~i~vwd--~~~~~-----~~~~~~~----~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d 112 (253)
+.++|+ .+.+. .++-+.+-.|.-|| ..++. .+..++. .....-.++.. +|++++++-..++|...|
T Consensus 161 Ngl~Wd-~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 161 NGLAWD-SDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred cccccc-ccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 578888 55544 45556677787787 55553 2222221 11122345667 899999999999999999
Q ss_pred cCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE
Q 035558 113 LRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII 149 (253)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 149 (253)
..+++....+.. +...+++++|--.+-..+++..
T Consensus 240 p~tGK~L~eikl---Pt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 240 PTTGKILLEIKL---PTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CCCCcEEEEEEc---CCCceEEEEecCCCccEEEEEe
Confidence 999985554443 3448999999643334554433
No 418
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.17 E-value=1.1 Score=34.45 Aligned_cols=99 Identities=11% Similarity=0.131 Sum_probs=61.0
Q ss_pred CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEe------CCCcEEEEEcCCCCCeeeeecc-CCCCCCeeEEE
Q 035558 65 TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVS------ADGSVRVFDLRDKEHSTIIYES-SEPDTPLVRLG 136 (253)
Q Consensus 65 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~-~~~~~~i~~~~ 136 (253)
..|++||..+.+-...-.+-.+.|++|.|. +.++++.|. ....+..||+.+..-...-... ....+++..+.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence 468999988776444444566899999998 766766664 3556888998877521111111 12346888888
Q ss_pred eeCCCCCEEE-EEEe-CC-CeEEEEECCCC
Q 035558 137 WNKQDPRYMA-TIIM-DS-AKVVVLDIRFP 163 (253)
Q Consensus 137 ~~~~~~~~l~-~~~~-~~-~~i~~~d~~~~ 163 (253)
+...+...+. .|.. ++ ..|..||-.+.
T Consensus 96 ~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W 125 (281)
T PF12768_consen 96 FISNDGSNFWVAGRSANGSTFLMKYDGSSW 125 (281)
T ss_pred eeccCCceEEEeceecCCCceEEEEcCCce
Confidence 8654555444 3331 22 24777876543
No 419
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.16 E-value=0.91 Score=37.56 Aligned_cols=77 Identities=16% Similarity=0.218 Sum_probs=49.0
Q ss_pred CeeEEEeeCCCCCEEEEEEeCCCeEEEEECCC--CC-------CCe---ee-------ec-ccccceeEEEEecCC--CC
Q 035558 131 PLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF--PT-------LPV---VE-------LQ-RHQASVNAIAWAPHS--SC 188 (253)
Q Consensus 131 ~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~--~~-------~~~---~~-------~~-~~~~~i~~~~~~~~~--~~ 188 (253)
.|..+..++ .|..++.+|.+| |.+..+.. +. ++. .+ +. ...-.+..++|+|+. +.
T Consensus 105 eV~~vl~s~-~GS~VaL~G~~G--i~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~ 181 (741)
T KOG4460|consen 105 EVYQVLLSP-TGSHVALIGIKG--LMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDP 181 (741)
T ss_pred EEEEEEecC-CCceEEEecCCe--eEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCc
Confidence 566677777 788888777777 44444411 00 000 00 00 111246678999987 56
Q ss_pred eEEEecCCCcEEEEeccCCCCC
Q 035558 189 HICTAGDDSQALIWDLSSMGQP 210 (253)
Q Consensus 189 ~l~~~~~dg~i~iwd~~~~~~~ 210 (253)
.|..-+.|..||+||+......
T Consensus 182 hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred eEEEEecCcEEEEEecCCcchh
Confidence 8888889999999999887644
No 420
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.09 E-value=1.1 Score=34.23 Aligned_cols=136 Identities=16% Similarity=0.192 Sum_probs=83.1
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---eeeeeecccccEEE
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---VDTQLIAHDKEVYD 90 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~ 90 (253)
.++|.|+.++ ..+..+..+.-. +--.++.. .+++...+..|.-+.+.|+.+.+ ....+.........
T Consensus 107 GL~IvDIS~P-~sP~~~~~lnt~------gyaygv~v---sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~ 176 (370)
T COG5276 107 GLRIVDISTP-DSPTLIGFLNTD------GYAYGVYV---SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHD 176 (370)
T ss_pred ceEEEeccCC-CCcceeccccCC------ceEEEEEe---cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCcee
Confidence 8999999886 333444444331 12234444 48888888855556778887654 22333333333455
Q ss_pred EEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC
Q 035558 91 IAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL 165 (253)
Q Consensus 91 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~ 165 (253)
++.+ |++-..+..|+-+.+.|+.....+..+.... ....+.++..++ +..+++. .+.+ +.+-|....+.
T Consensus 177 v~IS-Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsd-nr~y~vv--y~eg-vlivd~s~~ss 245 (370)
T COG5276 177 VAIS-GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSD-NRAYLVV--YDEG-VLIVDVSGPSS 245 (370)
T ss_pred EEEe-cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecC-CeeEEEE--cccc-eEEEecCCCCC
Confidence 5554 7777777889999999999887665554332 222677777765 4444443 4445 88888776553
No 421
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.02 E-value=0.0028 Score=50.81 Aligned_cols=140 Identities=15% Similarity=0.225 Sum_probs=92.0
Q ss_pred EEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCe-EEEEeCCCcEEEEEcCCCCCeeeeec
Q 035558 47 SFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGV-FASVSADGSVRVFDLRDKEHSTIIYE 124 (253)
Q Consensus 47 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~ 124 (253)
...|- +++.-++.++.+..+..||-.. +...... .++...+++|. ++.. ++.+-..+.+.+||+.+......-..
T Consensus 39 ~~~w~-~e~~nlavaca~tiv~~YD~ag-q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 39 IHRWR-PEGHNLAVACANTIVIYYDKAG-QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred eeeEe-cCCCceehhhhhhHHHhhhhhc-ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 45677 4444477777788888888763 3333332 35566778888 5554 44566788999999987652222211
Q ss_pred cCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCC
Q 035558 125 SSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDS 197 (253)
Q Consensus 125 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 197 (253)
. .+ .-.-+.|++ ....++.+...+. +.+|+.+..+. ......|...++++++.+.+ +.+.++.|.
T Consensus 116 g-~~--s~sll~wsK-g~~el~ig~~~gn-~viynhgtsR~-iiv~Gkh~RRgtq~av~lEd--~vil~dcd~ 180 (615)
T KOG2247|consen 116 G-TS--SKSLLAWSK-GTPELVIGNNAGN-IVIYNHGTSRR-IIVMGKHQRRGTQIAVTLED--YVILCDCDN 180 (615)
T ss_pred C-cc--hHHHHhhcc-CCccccccccccc-eEEEeccchhh-hhhhcccccceeEEEecccc--eeeecCcHH
Confidence 1 11 112267888 6777778878888 99999987664 44555588899999999986 455555543
No 422
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.95 E-value=1.6 Score=35.15 Aligned_cols=143 Identities=8% Similarity=-0.024 Sum_probs=74.2
Q ss_pred CeeEEEecCCCCCEEEEEe-----------CCC-eEEEEeccC--ce--eeeeeecccccEEEEEec-CCCeEEEEeCCC
Q 035558 44 PLTSFDWNEAEPRRIGTSS-----------IDT-TCTIWDIER--EA--VDTQLIAHDKEVYDIAWG-GVGVFASVSADG 106 (253)
Q Consensus 44 ~v~~~~~~~~~~~~l~~~~-----------~dg-~i~vwd~~~--~~--~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg 106 (253)
....++|. ++++++++-. ..+ .|.+++-.. ++ ....+...-.....+++. ++ +++ +....
T Consensus 15 ~P~~ia~d-~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 15 NPIAVCFD-ERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCceeeEC-CCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 45588998 7888777642 223 677776532 22 223333233456788888 66 444 44444
Q ss_pred cEEEEEcCCCC----Ceeee-eccCC----CCCCeeEEEeeCCCCCEEEEEEeC-------------------CCeEEEE
Q 035558 107 SVRVFDLRDKE----HSTII-YESSE----PDTPLVRLGWNKQDPRYMATIIMD-------------------SAKVVVL 158 (253)
Q Consensus 107 ~i~i~d~~~~~----~~~~~-~~~~~----~~~~i~~~~~~~~~~~~l~~~~~~-------------------~~~i~~~ 158 (253)
..++.|..... ....+ ..... +......++|.| ++.+.++-+.. +. |.-+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~-i~r~ 169 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGG-LFRY 169 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCce-EEEE
Confidence 33444554321 11222 22211 123577899999 77766554421 22 4444
Q ss_pred ECCCCCCCeeeecccccceeEEEEecCCCCeEEEec
Q 035558 159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAG 194 (253)
Q Consensus 159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 194 (253)
|..... ...+...-.....++|+|+| .++++-.
T Consensus 170 ~pdg~~--~e~~a~G~rnp~Gl~~d~~G-~l~~tdn 202 (367)
T TIGR02604 170 NPDGGK--LRVVAHGFQNPYGHSVDSWG-DVFFCDN 202 (367)
T ss_pred ecCCCe--EEEEecCcCCCccceECCCC-CEEEEcc
Confidence 544322 22222222335689999998 4666544
No 423
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.78 E-value=1.4 Score=33.73 Aligned_cols=152 Identities=10% Similarity=0.112 Sum_probs=90.5
Q ss_pred CCCCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558 1 ECQKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT 79 (253)
Q Consensus 1 sp~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 79 (253)
+|++..++++... .--|+=...+ +.++++.-..- ...-++.+. .++.+.++--.++.+.++.+.....+.
T Consensus 94 np~~rtLFav~n~p~~iVElt~~G----dlirtiPL~g~----~DpE~Ieyi-g~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 94 NPDTRTLFAVTNKPAAIVELTKEG----DLIRTIPLTGF----SDPETIEYI-GGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred CCCcceEEEecCCCceEEEEecCC----ceEEEeccccc----CChhHeEEe-cCCEEEEEehhcceEEEEEEcCCccEE
Confidence 4777777777776 4444433333 55555432110 123367776 667777776778888888776553221
Q ss_pred e-----ee----cc-cccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCC-------CCCeeEEEeeCCC
Q 035558 80 Q-----LI----AH-DKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEP-------DTPLVRLGWNKQD 141 (253)
Q Consensus 80 ~-----~~----~~-~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~ 141 (253)
. ++ .+ +...-.++|. .+..|..+-+..-+.||................+ -..+..+.|++..
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~ 244 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAIT 244 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCC
Confidence 1 11 12 4566789999 7778888888888888887754311111111111 1257788999866
Q ss_pred CCEEEEEEeCCCeEEEEECCC
Q 035558 142 PRYMATIIMDSAKVVVLDIRF 162 (253)
Q Consensus 142 ~~~l~~~~~~~~~i~~~d~~~ 162 (253)
+.+++-+..+.. +.-.|...
T Consensus 245 ~~LLVLS~ESr~-l~Evd~~G 264 (316)
T COG3204 245 NSLLVLSDESRR-LLEVDLSG 264 (316)
T ss_pred CcEEEEecCCce-EEEEecCC
Confidence 666666665555 77777654
No 424
>PHA02790 Kelch-like protein; Provisional
Probab=94.77 E-value=2.1 Score=35.82 Aligned_cols=143 Identities=7% Similarity=-0.046 Sum_probs=69.7
Q ss_pred CCCEEEEEeCC--CeEEEEeccCce--eeeeeecccccEEEEEecCCCeEEEEeCCC---cEEEEEcCCCCCeeeeeccC
Q 035558 54 EPRRIGTSSID--TTCTIWDIEREA--VDTQLIAHDKEVYDIAWGGVGVFASVSADG---SVRVFDLRDKEHSTIIYESS 126 (253)
Q Consensus 54 ~~~~l~~~~~d--g~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~ 126 (253)
++...+.|+.+ ..+..||..+++ .+..+...... .+++..++.+.+.|+.++ .+..||.++..- .......
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~-~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W-~~~~~m~ 395 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCN-PAVASINNVIYVIGGHSETDTTTEYLLPNHDQW-QFGPSTY 395 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcc-cEEEEECCEEEEecCcCCCCccEEEEeCCCCEE-EeCCCCC
Confidence 57777777754 357778876554 22222211111 122222788888887654 467888876642 1111111
Q ss_pred CCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEEecCC-----CcEE
Q 035558 127 EPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICTAGDD-----SQAL 200 (253)
Q Consensus 127 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~ 200 (253)
.+......+.+ ++.+.+.|+ . +.+||.++.+- .+..+....... +++.. ++ +..+.||.+ ..+.
T Consensus 396 ~~r~~~~~~~~---~~~IYv~GG---~-~e~ydp~~~~W~~~~~m~~~r~~~-~~~v~-~~-~IYviGG~~~~~~~~~ve 465 (480)
T PHA02790 396 YPHYKSCALVF---GRRLFLVGR---N-AEFYCESSNTWTLIDDPIYPRDNP-ELIIV-DN-KLLLIGGFYRGSYIDTIE 465 (480)
T ss_pred CccccceEEEE---CCEEEEECC---c-eEEecCCCCcEeEcCCCCCCcccc-EEEEE-CC-EEEEECCcCCCcccceEE
Confidence 11111112222 555556553 3 77888876441 122222111122 23322 34 577777754 3566
Q ss_pred EEeccCCC
Q 035558 201 IWDLSSMG 208 (253)
Q Consensus 201 iwd~~~~~ 208 (253)
.||..+.+
T Consensus 466 ~Yd~~~~~ 473 (480)
T PHA02790 466 VYNNRTYS 473 (480)
T ss_pred EEECCCCe
Confidence 77766543
No 425
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.71 E-value=1.4 Score=40.54 Aligned_cols=142 Identities=9% Similarity=0.152 Sum_probs=83.5
Q ss_pred eCCCeEEEEeccCceeeeeeecccccEEEEEec--CC-------CeEEEEeCCCcEEEEEcCCCCCee---ee---eccC
Q 035558 62 SIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG--GV-------GVFASVSADGSVRVFDLRDKEHST---II---YESS 126 (253)
Q Consensus 62 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~-------~~l~~~~~dg~i~i~d~~~~~~~~---~~---~~~~ 126 (253)
+.|..+.+|+.+++.....+.+-...|..+..- .. ++++....--.|.++-+.-.+... .. +...
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 457899999999977666666666666665543 11 233333333345555443221100 00 1111
Q ss_pred CCCCCeeEEEeeCCCCCEEEEEEeCCCeEE--EEECCCCCC-------------------Ceeeec-ccccceeEEEEec
Q 035558 127 EPDTPLVRLGWNKQDPRYMATIIMDSAKVV--VLDIRFPTL-------------------PVVELQ-RHQASVNAIAWAP 184 (253)
Q Consensus 127 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~--~~d~~~~~~-------------------~~~~~~-~~~~~i~~~~~~~ 184 (253)
.....|.++.... +|+.+++|- ||+ ++ +|....+.. .+..+. .+..+|..+....
T Consensus 176 ~dg~~V~~I~~t~-nGRIF~~G~-dg~-lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTE-NGRIFFAGR-DGN-LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEecc-CCcEEEeec-CCC-EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 2233688888554 777777654 445 43 333322110 012223 5677999999998
Q ss_pred CCCCeEEEecCCCcEEEEeccCC
Q 035558 185 HSSCHICTAGDDSQALIWDLSSM 207 (253)
Q Consensus 185 ~~~~~l~~~~~dg~i~iwd~~~~ 207 (253)
.. ..+.+-++.|+|.+||+...
T Consensus 253 SR-~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 253 SR-NILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred cc-ceeeeeccCceEEEEEccCC
Confidence 87 69999999999999999873
No 426
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.60 E-value=1.3 Score=32.71 Aligned_cols=137 Identities=11% Similarity=0.143 Sum_probs=72.7
Q ss_pred CCeeEEEecCCCCCEEEEEeCC---------CeEEEEeccCceeeeeeecccccEEEEEec-CCCeE-EEEeCCCcEEEE
Q 035558 43 GPLTSFDWNEAEPRRIGTSSID---------TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVF-ASVSADGSVRVF 111 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l-~~~~~dg~i~i~ 111 (253)
...+.-..+ |++++++-...| |.++.|-.. ..+..+...-.--+.++|+ +...+ ++-+.+-.|.-|
T Consensus 109 nR~NDgkvd-P~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 109 NRLNDGKVD-PDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred cccccCccC-CCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 345555566 788884432222 233333322 1122222222334578898 65544 455667778778
Q ss_pred E--cCCCCC--eeeeeccCC----CCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEe
Q 035558 112 D--LRDKEH--STIIYESSE----PDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWA 183 (253)
Q Consensus 112 d--~~~~~~--~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~ 183 (253)
| ..++.. ...+..... .....-.++... ++++.++. .++++|...|..+++. +.++.-....|++++|-
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~-~ng~~V~~~dp~tGK~-L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVAT-FNGGTVQKVDPTTGKI-LLEIKLPTPQITSCCFG 262 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEE-ecCcEEEEECCCCCcE-EEEEEcCCCceEEEEec
Confidence 7 444431 112221111 000112233443 55555554 4454599999999875 77777778899999997
Q ss_pred cC
Q 035558 184 PH 185 (253)
Q Consensus 184 ~~ 185 (253)
-.
T Consensus 263 Gk 264 (310)
T KOG4499|consen 263 GK 264 (310)
T ss_pred CC
Confidence 54
No 427
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=94.59 E-value=3.2 Score=37.06 Aligned_cols=146 Identities=15% Similarity=0.139 Sum_probs=85.2
Q ss_pred cccccEEEEEec---C---CC-eEEEEeCCCcEEEEEcC------CCC---------CeeeeeccCCCCCCeeEEEeeCC
Q 035558 83 AHDKEVYDIAWG---G---VG-VFASVSADGSVRVFDLR------DKE---------HSTIIYESSEPDTPLVRLGWNKQ 140 (253)
Q Consensus 83 ~~~~~v~~~~~~---~---~~-~l~~~~~dg~i~i~d~~------~~~---------~~~~~~~~~~~~~~i~~~~~~~~ 140 (253)
.-..+|..|+|. . .. .++..-....+.|+... ... ....+........+...++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 345688888876 1 11 23444445567777621 111 11112111223347888999999
Q ss_pred CCCEEEEEEeCCCeEEEEECCCCC----CCeeeeccccc----------ceeEEEEecCCCCeEEEecCCCcEEEEeccC
Q 035558 141 DPRYMATIIMDSAKVVVLDIRFPT----LPVVELQRHQA----------SVNAIAWAPHSSCHICTAGDDSQALIWDLSS 206 (253)
Q Consensus 141 ~~~~l~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~----------~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 206 (253)
+...||+....|. ..|||+.... ........+.+ .-..+.|.++. ..|+.++ ...+.++|+++
T Consensus 157 ~~~q~AiVD~~G~-Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~-~~lLv~~-r~~l~~~d~~~ 233 (765)
T PF10214_consen 157 DQRQFAIVDEKGN-WSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDS-NRLLVCN-RSKLMLIDFES 233 (765)
T ss_pred ccceEEEEeccCc-EEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCC-CEEEEEc-CCceEEEECCC
Confidence 9999999999998 9999992111 11111111112 23478888876 4666665 45788999987
Q ss_pred CCCCCCCCCCCeeeccCCCceeEEEEcCCC
Q 035558 207 MGQPVEGGLDPILAYTAGAEIEQLQWSSSQ 236 (253)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 236 (253)
..... ..........|.++.-+|..
T Consensus 234 ~~~~~-----~l~~~~~~~~IlDv~~~~~~ 258 (765)
T PF10214_consen 234 NWQTE-----YLVTAKTWSWILDVKRSPDN 258 (765)
T ss_pred CCccc-----hhccCCChhheeeEEecCCc
Confidence 65421 02333456678888888773
No 428
>PHA02790 Kelch-like protein; Provisional
Probab=94.55 E-value=2.4 Score=35.50 Aligned_cols=141 Identities=10% Similarity=-0.061 Sum_probs=67.8
Q ss_pred CCceEEeecC----cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCC---eEEEEeccCce
Q 035558 4 KPDLLATSSD----FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT---TCTIWDIEREA 76 (253)
Q Consensus 4 ~~~~l~~~~~----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~ 76 (253)
++.+.+.|+. .+..|+...+ .+.....+.... .....+. .++.+.+.|+.++ .+..||.++.+
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n--~W~~~~~l~~~r-----~~~~~~~---~~g~IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDA--AWVNMPSLLKPR-----CNPAVAS---INNVIYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCC--eEEECCCCCCCC-----cccEEEE---ECCEEEEecCcCCCCccEEEEeCCCCE
Confidence 4455566652 6777876552 233332222111 1111222 3577778877654 46778887654
Q ss_pred eee--eeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC-
Q 035558 77 VDT--QLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA- 153 (253)
Q Consensus 77 ~~~--~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~- 153 (253)
-.. .+....... +++..++.+.+.| |.+..||.++++- ..+........... ++.. ++.+.++||.++.
T Consensus 388 W~~~~~m~~~r~~~-~~~~~~~~IYv~G---G~~e~ydp~~~~W-~~~~~m~~~r~~~~-~~v~--~~~IYviGG~~~~~ 459 (480)
T PHA02790 388 WQFGPSTYYPHYKS-CALVFGRRLFLVG---RNAEFYCESSNTW-TLIDDPIYPRDNPE-LIIV--DNKLLLIGGFYRGS 459 (480)
T ss_pred EEeCCCCCCccccc-eEEEECCEEEEEC---CceEEecCCCCcE-eEcCCCCCCccccE-EEEE--CCEEEEECCcCCCc
Confidence 221 222111111 2221266666666 4577899877642 22222222221222 2222 6677777775421
Q ss_pred ---eEEEEECCC
Q 035558 154 ---KVVVLDIRF 162 (253)
Q Consensus 154 ---~i~~~d~~~ 162 (253)
.+..||..+
T Consensus 460 ~~~~ve~Yd~~~ 471 (480)
T PHA02790 460 YIDTIEVYNNRT 471 (480)
T ss_pred ccceEEEEECCC
Confidence 266666654
No 429
>PRK13684 Ycf48-like protein; Provisional
Probab=94.48 E-value=1.9 Score=34.11 Aligned_cols=151 Identities=9% Similarity=0.054 Sum_probs=78.6
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEE-EeccCceeeeee-ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCe
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTI-WDIEREAVDTQL-IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHS 119 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~v-wd~~~~~~~~~~-~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~ 119 (253)
..+.++.+. +++.+++++ ..|.+.. ++- .++.-... ..-...++++.+. +++.++. +..|.+++=....+...
T Consensus 173 g~~~~i~~~-~~g~~v~~g-~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 173 GVVRNLRRS-PDGKYVAVS-SRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESW 248 (334)
T ss_pred ceEEEEEEC-CCCeEEEEe-CCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCcc
Confidence 567888888 666666555 4565543 222 12211112 2334678888888 6666555 45676653223333322
Q ss_pred eeeecc-CCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeec---ccccceeEEEEecCCCCeEEEecC
Q 035558 120 TIIYES-SEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQ---RHQASVNAIAWAPHSSCHICTAGD 195 (253)
Q Consensus 120 ~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~~ 195 (253)
...... ......+..+.+.| ++..+++ +.+|. +. .....++. -.... .-....+.+.|..++ +. +..+.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~-~~~~~~~-G~~G~-v~-~S~d~G~t-W~~~~~~~~~~~~~~~~~~~~~~-~~-~~~G~ 321 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRT-PGEIWAG-GGNGT-LL-VSKDGGKT-WEKDPVGEEVPSNFYKIVFLDPE-KG-FVLGQ 321 (334)
T ss_pred ccccCCccccccceeeEEEcC-CCCEEEE-cCCCe-EE-EeCCCCCC-CeECCcCCCCCcceEEEEEeCCC-ce-EEECC
Confidence 221111 11123578888988 6665554 44554 33 33333221 12221 122357778877665 34 55566
Q ss_pred CCcEEEEec
Q 035558 196 DSQALIWDL 204 (253)
Q Consensus 196 dg~i~iwd~ 204 (253)
.|.|.-|+-
T Consensus 322 ~G~il~~~~ 330 (334)
T PRK13684 322 RGVLLRYVG 330 (334)
T ss_pred CceEEEecC
Confidence 788877653
No 430
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.41 E-value=2.3 Score=34.67 Aligned_cols=91 Identities=15% Similarity=0.117 Sum_probs=52.4
Q ss_pred CCCceEEeecC-c-EE---EEEccCCc-cccceeeeecCCCCccccCCeeEEEecC----------CCCCEEEEEeCCCe
Q 035558 3 QKPDLLATSSD-F-LR---VWRISDED-RRVELKSLLNGNKNSEYCGPLTSFDWNE----------AEPRRIGTSSIDTT 66 (253)
Q Consensus 3 ~~~~~l~~~~~-~-v~---iw~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------~~~~~l~~~~~dg~ 66 (253)
+++++||.+.+ . +. -|+..... ..........+.-..+....|+++.|-| ++...++.|..+|.
T Consensus 11 ~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ssG~ 90 (415)
T PF14655_consen 11 PDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVGTSSGY 90 (415)
T ss_pred CCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEEecccE
Confidence 57778888764 2 22 35442210 1112222222222111114677776643 23578999999999
Q ss_pred EEEEeccCceeeeeeecccccEEEEEec
Q 035558 67 CTIWDIEREAVDTQLIAHDKEVYDIAWG 94 (253)
Q Consensus 67 i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 94 (253)
|++|... |.++..-.-|..+|..+...
T Consensus 91 vrfyte~-G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 91 VRFYTEN-GVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred EEEEecc-chHHHHHhcCccceEEEEec
Confidence 9999874 66555445578888888775
No 431
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.33 E-value=1.4 Score=32.02 Aligned_cols=140 Identities=11% Similarity=0.223 Sum_probs=78.7
Q ss_pred CEEEEEeCCCeEEEEeccC--ceeeeeeecccccEEEEEec-CCCeEEEEeCCC------cEEEE-EcCCC----CCee-
Q 035558 56 RRIGTSSIDTTCTIWDIER--EAVDTQLIAHDKEVYDIAWG-GVGVFASVSADG------SVRVF-DLRDK----EHST- 120 (253)
Q Consensus 56 ~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg------~i~i~-d~~~~----~~~~- 120 (253)
+.|+.+.....|.+|+++. .+....+.. -+.|..+.++ .|++++|--.+. .+|+| +.+.. .+..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 5555556678899999983 335556653 4789999999 999999874432 45664 22211 1111
Q ss_pred -------------------eeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC-----Ceeeec-----
Q 035558 121 -------------------IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL-----PVVELQ----- 171 (253)
Q Consensus 121 -------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-----~~~~~~----- 171 (253)
.+.+.+. ..++.+++..|.+|++++.+ ++. +.+|.+..... ....+.
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl-~~~p~ciaCC~~tG~LlVg~--~~~-l~lf~l~~~~~~~~~~~~lDFe~~l~~ 183 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPL-SEPPLCIACCPVTGNLLVGC--GNK-LVLFTLKYQTIQSEKFSFLDFERSLID 183 (215)
T ss_pred EEcccccccCCCCccccceEEEEecC-CCCCCEEEecCCCCCEEEEc--CCE-EEEEEEEEEEEecccccEEechhhhhh
Confidence 0111111 23677888888777776643 333 88887754221 111111
Q ss_pred cccc-ceeEEEEecCCCCeEEEecCCCcEEEEec
Q 035558 172 RHQA-SVNAIAWAPHSSCHICTAGDDSQALIWDL 204 (253)
Q Consensus 172 ~~~~-~i~~~~~~~~~~~~l~~~~~dg~i~iwd~ 204 (253)
-|.+ .+..+++.. .++|..+ +-.++++.+
T Consensus 184 ~~~~~~p~~v~ic~---~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 184 HIDNFKPTQVAICE---GYIAVMS-DLEVLVLKL 213 (215)
T ss_pred eecCceEEEEEEEe---eEEEEec-CCEEEEEEE
Confidence 1111 245566653 3676665 455666654
No 432
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.27 E-value=0.64 Score=38.28 Aligned_cols=145 Identities=14% Similarity=0.112 Sum_probs=85.3
Q ss_pred CCCCEEE-EEeCCCeEEEEeccCceeeeeeecccccEEEEEec---------CCCeEEEEeCCCcEEEEEcCCCCC-eee
Q 035558 53 AEPRRIG-TSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG---------GVGVFASVSADGSVRVFDLRDKEH-STI 121 (253)
Q Consensus 53 ~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~---------~~~~l~~~~~dg~i~i~d~~~~~~-~~~ 121 (253)
.+.++|+ .|..-..++-.|++.|+.+..+..|...+ +.|. +.+.|+ |-.+..|.-.|.+-... +..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEE-eecccceEEecccccCCceee
Confidence 4455544 44555578888999999998888776553 4443 233444 44455555556664431 111
Q ss_pred eeccC-CCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEE
Q 035558 122 IYESS-EPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQAL 200 (253)
Q Consensus 122 ~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 200 (253)
..... .......+.. .. ...++|+++..|- |++||.-... ....+++-...|-.+..+.+|...|+|| ...+.
T Consensus 554 ~esKdY~tKn~Fss~~-tT-esGyIa~as~kGD-irLyDRig~r-AKtalP~lG~aIk~idvta~Gk~ilaTC--k~yll 627 (776)
T COG5167 554 VESKDYKTKNKFSSGM-TT-ESGYIAAASRKGD-IRLYDRIGKR-AKTALPGLGDAIKHIDVTANGKHILATC--KNYLL 627 (776)
T ss_pred eeehhccccccccccc-cc-cCceEEEecCCCc-eeeehhhcch-hhhcCcccccceeeeEeecCCcEEEEee--cceEE
Confidence 11111 0111122222 12 5679999999998 9999965422 2455666777899999999996444554 35677
Q ss_pred EEeccC
Q 035558 201 IWDLSS 206 (253)
Q Consensus 201 iwd~~~ 206 (253)
+-|++-
T Consensus 628 L~d~~i 633 (776)
T COG5167 628 LTDVPI 633 (776)
T ss_pred EEeccc
Confidence 777653
No 433
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.24 E-value=3.8 Score=36.46 Aligned_cols=151 Identities=13% Similarity=0.069 Sum_probs=82.4
Q ss_pred CCEEEEEeCCCeEEEEeccCceeeeeeecccccEE-------------EEEec---CCCeEEEEeC----------CCcE
Q 035558 55 PRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVY-------------DIAWG---GVGVFASVSA----------DGSV 108 (253)
Q Consensus 55 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-------------~~~~~---~~~~l~~~~~----------dg~i 108 (253)
+..++.++.|+.|.-.|.++++....+.. .+.|. .+.-. .+..++.|+. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 45788889999999999999998866531 11110 01111 2455666643 6889
Q ss_pred EEEEcCCCCCeeeeecc-CC-----CCC--------Ce-eEEEeeCCCCCEEEEEE------------------eCCCeE
Q 035558 109 RVFDLRDKEHSTIIYES-SE-----PDT--------PL-VRLGWNKQDPRYMATII------------------MDSAKV 155 (253)
Q Consensus 109 ~i~d~~~~~~~~~~~~~-~~-----~~~--------~i-~~~~~~~~~~~~l~~~~------------------~~~~~i 155 (253)
+-+|.++++..-..... .. ..+ .+ ..++++| ...+++... ..+. |
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~-~~glvy~ptGn~~pd~~g~~r~~~~n~y~~s-l 416 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDE-KLGLVYLPMGNQTPDQWGGDRTPADEKYSSS-L 416 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcC-CCCeEEEeCCCccccccCCccccCcccccce-E
Confidence 99999999743222210 00 000 11 2345555 333333321 1122 6
Q ss_pred EEEECCCCCCCeeeecc--cc-------cceeEEEEec-CCC--CeEEEecCCCcEEEEeccCCCC
Q 035558 156 VVLDIRFPTLPVVELQR--HQ-------ASVNAIAWAP-HSS--CHICTAGDDSQALIWDLSSMGQ 209 (253)
Q Consensus 156 ~~~d~~~~~~~~~~~~~--~~-------~~i~~~~~~~-~~~--~~l~~~~~dg~i~iwd~~~~~~ 209 (253)
.-.|.++++. .-.++. |. ....-+.+.. +|. ..++.++.+|.+.++|.++++.
T Consensus 417 vALD~~TGk~-~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 417 VALDATTGKE-RWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred EEEeCCCCce-EEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 6667776653 333332 21 0111122322 441 2788999999999999998873
No 434
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.20 E-value=0.44 Score=35.13 Aligned_cols=69 Identities=10% Similarity=0.167 Sum_probs=46.0
Q ss_pred EecCCCCeEEEecCCCcEEEEeccCCCCCCCC-CCCCeeec------cCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 182 WAPHSSCHICTAGDDSQALIWDLSSMGQPVEG-GLDPILAY------TAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 182 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
+..++ .+|++-..+|.+++||+.+.+..... ...|.... .....|..+..+.+|.-+++-+ ++....|+
T Consensus 18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence 34455 58999999999999999998755422 11121111 4567889999998887555444 46667665
No 435
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.58 E-value=2.9 Score=34.71 Aligned_cols=136 Identities=10% Similarity=0.045 Sum_probs=77.7
Q ss_pred CCCeEE-EEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC------CCCEEEEEEeCCCeEEEEECCCCCCCe
Q 035558 95 GVGVFA-SVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ------DPRYMATIIMDSAKVVVLDIRFPTLPV 167 (253)
Q Consensus 95 ~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~l~~~~~~~~~i~~~d~~~~~~~~ 167 (253)
+.++++ .|+....++--|++.++.+... ..+. .+ -+.|.|. ....-++|-.+.+ |.-.|.|-....+
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW---~~~d-dv-vVqy~p~~kf~qmt~eqtlvGlS~~s-vFrIDPR~~gNKi 551 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEW---DLKD-DV-VVQYNPYFKFQQMTDEQTLVGLSDYS-VFRIDPRARGNKI 551 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEe---ecCC-cc-eeecCCchhHHhcCccceEEeecccc-eEEecccccCCce
Confidence 444433 4555556666677766632221 1222 22 3455552 1222334445555 7777777554323
Q ss_pred eeecc--c--ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEE
Q 035558 168 VELQR--H--QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA 243 (253)
Q Consensus 168 ~~~~~--~--~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 243 (253)
..... . .....+..-..+| +++.+|..|-|++||.-..... ..+.+.+..|..+..+.+|..++|.+
T Consensus 552 ~v~esKdY~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rAK-------talP~lG~aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 552 KVVESKDYKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRAK-------TALPGLGDAIKHIDVTANGKHILATC 622 (776)
T ss_pred eeeeehhccccccccccccccCc--eEEEecCCCceeeehhhcchhh-------hcCcccccceeeeEeecCCcEEEEee
Confidence 22211 1 1123333333444 8999999999999997654432 25566788999999999999888776
Q ss_pred cC
Q 035558 244 FS 245 (253)
Q Consensus 244 ~~ 245 (253)
..
T Consensus 623 k~ 624 (776)
T COG5167 623 KN 624 (776)
T ss_pred cc
Confidence 54
No 436
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.55 E-value=0.85 Score=33.64 Aligned_cols=65 Identities=9% Similarity=0.155 Sum_probs=46.6
Q ss_pred CCCEEEEEEeCCCeEEEEECCCCCCCeee------ec-------ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCC
Q 035558 141 DPRYMATIIMDSAKVVVLDIRFPTLPVVE------LQ-------RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM 207 (253)
Q Consensus 141 ~~~~l~~~~~~~~~i~~~d~~~~~~~~~~------~~-------~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 207 (253)
.+.++++.+.+|. +++||+.+.+..+.. +. .....|..+.++.+| .-+++-+ +|..+.|+..-.
T Consensus 21 ~~~~Ll~iT~~G~-l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 21 NGSYLLAITSSGL-LYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-NGDSYSYSPDLG 97 (219)
T ss_pred CCCEEEEEeCCCe-EEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEEe-CCCEEEeccccc
Confidence 6788988899998 999999986532211 11 245678889999888 4566554 578899987654
Q ss_pred C
Q 035558 208 G 208 (253)
Q Consensus 208 ~ 208 (253)
.
T Consensus 98 ~ 98 (219)
T PF07569_consen 98 C 98 (219)
T ss_pred e
Confidence 4
No 437
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=93.45 E-value=3.7 Score=33.72 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=25.0
Q ss_pred cceeEEEEecCCCCeEEEecCCCcEEEEeccC
Q 035558 175 ASVNAIAWAPHSSCHICTAGDDSQALIWDLSS 206 (253)
Q Consensus 175 ~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 206 (253)
..|.+++..+.. +.|++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r-~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSR-RLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTT-TEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCc-CEEEEEeCCCcEEEEEEeC
Confidence 448899999988 6999999999999999986
No 438
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.29 E-value=5.2 Score=34.97 Aligned_cols=116 Identities=10% Similarity=0.105 Sum_probs=72.4
Q ss_pred CeeEEEeeCC-CCCEEEEEEeCCCeEEEEECCC-------C----C--------CCeeeecccccceeEEEEe--cCCCC
Q 035558 131 PLVRLGWNKQ-DPRYMATIIMDSAKVVVLDIRF-------P----T--------LPVVELQRHQASVNAIAWA--PHSSC 188 (253)
Q Consensus 131 ~i~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~-------~----~--------~~~~~~~~~~~~i~~~~~~--~~~~~ 188 (253)
.|+.|....- +...|+++..||. |.+|.+.. . . .|...+. -...+++++++ ... +
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~-V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~-r 178 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGD-VLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKS-R 178 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCe-EEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcc-e
Confidence 4555544332 3456666666776 99996521 0 0 1222222 24578999998 666 6
Q ss_pred eEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC---C---ceEEEEcCCcEEEEEC
Q 035558 189 HICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ---P---DWVAIAFSTKLQILRV 253 (253)
Q Consensus 189 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~---~~~~~~~~~~i~vw~l 253 (253)
++|+++....|.||-......... ......+...|.+|+|-++. . .+++++-.|.+-+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~----~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFY----HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccc----cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 899999999999987766432210 01123367788899997764 1 4557888898888764
No 439
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.20 E-value=5.3 Score=34.79 Aligned_cols=52 Identities=19% Similarity=0.360 Sum_probs=39.0
Q ss_pred CeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCC
Q 035558 65 TTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKE 117 (253)
Q Consensus 65 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 117 (253)
-.|+|++.. |+.+..+.-..+++-.+.|++...|+....+|++++|++....
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ 115 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEF 115 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhh
Confidence 458888875 5555544433447888999977788888999999999997654
No 440
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.91 E-value=4.5 Score=33.13 Aligned_cols=148 Identities=11% Similarity=0.143 Sum_probs=87.5
Q ss_pred CCCCEEEEEeCCCeEEEEeccCce-----eeeeeecccccEEEEEec-----CCCeEEEEeCCCcEEEEEcCCCC-----
Q 035558 53 AEPRRIGTSSIDTTCTIWDIEREA-----VDTQLIAHDKEVYDIAWG-----GVGVFASVSADGSVRVFDLRDKE----- 117 (253)
Q Consensus 53 ~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~----- 117 (253)
.+...|+.|+.+|.++||+..... .+... .-..+|..++.- .....++.-.-..+.+|.+....
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence 356789999999999999986543 11111 245688877653 23333344556778888874322
Q ss_pred ----CeeeeeccCCCCCCeeEEEeeCC---C-CCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCe
Q 035558 118 ----HSTIIYESSEPDTPLVRLGWNKQ---D-PRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCH 189 (253)
Q Consensus 118 ----~~~~~~~~~~~~~~i~~~~~~~~---~-~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 189 (253)
....++...-.. ....+..-|. . ..+|.+=+.||. +.+|+-+.... ...+.. ---..-+.|.|.-+ .
T Consensus 114 g~~~~L~~~yeh~l~~-~a~nm~~G~Fgg~~~~~~IcVQS~DG~-L~~feqe~~~f-~~~lp~-~llPgPl~Y~~~tD-s 188 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQR-TAYNMCCGPFGGVKGRDFICVQSMDGS-LSFFEQESFAF-SRFLPD-FLLPGPLCYCPRTD-S 188 (418)
T ss_pred CcEEEEEEEEEEeccc-ceeEEEEEECCCCCCceEEEEEecCce-EEEEeCCcEEE-EEEcCC-CCCCcCeEEeecCC-E
Confidence 112222222211 3333333222 2 467778888998 99999765321 112221 12223468888874 8
Q ss_pred EEEecCCCcEEEEeccC
Q 035558 190 ICTAGDDSQALIWDLSS 206 (253)
Q Consensus 190 l~~~~~dg~i~iwd~~~ 206 (253)
|++++.+..+..|....
T Consensus 189 fvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 189 FVTASSSWTLECYKYQD 205 (418)
T ss_pred EEEecCceeEEEecHHH
Confidence 99999999999987643
No 441
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.54 E-value=3.9 Score=34.11 Aligned_cols=26 Identities=4% Similarity=-0.059 Sum_probs=18.7
Q ss_pred CeeEEEecCCCCCEEEEEeCCCeEEEE
Q 035558 44 PLTSFDWNEAEPRRIGTSSIDTTCTIW 70 (253)
Q Consensus 44 ~v~~~~~~~~~~~~l~~~~~dg~i~vw 70 (253)
.|..+..+ +.|..++-.+.+|.+.++
T Consensus 105 eV~~vl~s-~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLS-PTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEec-CCCceEEEecCCeeEEEE
Confidence 45566677 788888888888866544
No 442
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=92.45 E-value=4 Score=31.44 Aligned_cols=112 Identities=15% Similarity=0.158 Sum_probs=63.3
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe------CCCeEEEEeccCceeeeeeec----
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS------IDTTCTIWDIEREAVDTQLIA---- 83 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~---- 83 (253)
.|.+||.... +-...-.+-. +.|+++.|. .+.++++.|. ....+..||+.+..-. .+.+
T Consensus 17 ~lC~yd~~~~----qW~~~g~~i~-----G~V~~l~~~-~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~ 85 (281)
T PF12768_consen 17 GLCLYDTDNS----QWSSPGNGIS-----GTVTDLQWA-SNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSN 85 (281)
T ss_pred EEEEEECCCC----EeecCCCCce-----EEEEEEEEe-cCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccc
Confidence 8999999884 3222222333 789999997 6667777664 3457888998866522 2222
Q ss_pred -ccccEEEEEec--CCC-eEEEEe-CCCc--EEEEEcCCCCCeeeeec-cCCCCCCeeEEEeeC
Q 035558 84 -HDKEVYDIAWG--GVG-VFASVS-ADGS--VRVFDLRDKEHSTIIYE-SSEPDTPLVRLGWNK 139 (253)
Q Consensus 84 -~~~~v~~~~~~--~~~-~l~~~~-~dg~--i~i~d~~~~~~~~~~~~-~~~~~~~i~~~~~~~ 139 (253)
-.++|..+.+. +.. ..+.|. .+|. |..||=.+-. .+.. .......|..+.+-|
T Consensus 86 ~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~---~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 86 SIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWS---SIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred cCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceE---eccccccCCCCEEEEEEEEe
Confidence 34788888886 444 444443 3343 5555433322 2221 122233566665544
No 443
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=92.34 E-value=6.4 Score=33.50 Aligned_cols=53 Identities=11% Similarity=0.151 Sum_probs=36.6
Q ss_pred eEEEEeccCceeeeeeecccccEEE---------EEec-CCC---eEEEEeCCCcEEEEEcCCCCC
Q 035558 66 TCTIWDIEREAVDTQLIAHDKEVYD---------IAWG-GVG---VFASVSADGSVRVFDLRDKEH 118 (253)
Q Consensus 66 ~i~vwd~~~~~~~~~~~~~~~~v~~---------~~~~-~~~---~l~~~~~dg~i~i~d~~~~~~ 118 (253)
.|.-.|+++++....++.....+++ +... +++ .++.+..+|.+.+.|-++++.
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 5777789999987777642222221 2222 444 788999999999999998874
No 444
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=92.33 E-value=0.75 Score=23.09 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=19.8
Q ss_pred cccceeEEEEecCCCCeEEEecCC--CcEEEE
Q 035558 173 HQASVNAIAWAPHSSCHICTAGDD--SQALIW 202 (253)
Q Consensus 173 ~~~~i~~~~~~~~~~~~l~~~~~d--g~i~iw 202 (253)
....-....|+|||..+++++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344567789999996455566666 776666
No 445
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.05 E-value=7.9 Score=36.00 Aligned_cols=143 Identities=11% Similarity=0.196 Sum_probs=81.5
Q ss_pred ceEEeecCcEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCC--------CEEEEEeCCCeEEEEeccCce-
Q 035558 6 DLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEP--------RRIGTSSIDTTCTIWDIEREA- 76 (253)
Q Consensus 6 ~~l~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~l~~~~~dg~i~vwd~~~~~- 76 (253)
+.=+|-++.+.+|+++++ .....+.+-. ..|..+..-.|.. .+|+.++ --.|.++-+.-.+
T Consensus 92 RaWiTiDn~L~lWny~~~----~e~~~~d~~s-----htIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~~~~ 161 (1311)
T KOG1900|consen 92 RAWITIDNNLFLWNYESD----NELAEYDGLS-----HTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSFDEF 161 (1311)
T ss_pred ceEEEeCCeEEEEEcCCC----Cccccccchh-----hhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEeccc
Confidence 333444449999999986 4444555544 4566665432332 2344443 3456665443221
Q ss_pred ------ee--eeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcC--CCC------C-------------eeeeeccC
Q 035558 77 ------VD--TQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLR--DKE------H-------------STIIYESS 126 (253)
Q Consensus 77 ------~~--~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~--~~~------~-------------~~~~~~~~ 126 (253)
.. ..+......|.++... +|+.|.+|- || .+|.+. ... + ...+....
T Consensus 162 ~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~ 238 (1311)
T KOG1900|consen 162 TGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP 238 (1311)
T ss_pred cCcccccccceeeecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC
Confidence 11 1122234578888866 777777655 55 455442 110 0 00111122
Q ss_pred -CCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCC
Q 035558 127 -EPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFP 163 (253)
Q Consensus 127 -~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~ 163 (253)
.+..+|..+.... ..+.+.+-+..+. |.+||+...
T Consensus 239 ~~~~dpI~qi~ID~-SR~IlY~lsek~~-v~~Y~i~~~ 274 (1311)
T KOG1900|consen 239 GSSKDPIRQITIDN-SRNILYVLSEKGT-VSAYDIGGN 274 (1311)
T ss_pred CCCCCcceeeEecc-ccceeeeeccCce-EEEEEccCC
Confidence 3455899999987 7788888888888 999999874
No 446
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.98 E-value=0.023 Score=45.88 Aligned_cols=139 Identities=13% Similarity=0.188 Sum_probs=90.5
Q ss_pred EEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEE-EEEeCCCeEEEEECCCCCCCe
Q 035558 90 DIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMA-TIIMDSAKVVVLDIRFPTLPV 167 (253)
Q Consensus 90 ~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~~~~~i~~~d~~~~~~~~ 167 (253)
...|- .+.-++.++.+-.+..||-.... +.. ....+....++|+. ++..++ .+...+. +.+||+.+.....
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~----~le-~n~tg~aldm~wDk-egdvlavlAek~~p-iylwd~n~eytqq 111 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQV----ILE-LNPTGKALDMAWDK-EGDVLAVLAEKTGP-IYLWDVNSEYTQQ 111 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcce----ecc-cCCchhHhhhhhcc-ccchhhhhhhcCCC-eeechhhhhhHHH
Confidence 34455 45558888888888888866543 211 12333666788888 555544 4455566 9999998754211
Q ss_pred eeec-ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCC
Q 035558 168 VELQ-RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFST 246 (253)
Q Consensus 168 ~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 246 (253)
..+. .|.... +.|++-. ..++.+...|.+.|++........ ..-.|..+++.++|.+.+. .+.++.|.
T Consensus 112 LE~gg~~s~sl--l~wsKg~-~el~ig~~~gn~viynhgtsR~ii-------v~Gkh~RRgtq~av~lEd~-vil~dcd~ 180 (615)
T KOG2247|consen 112 LESGGTSSKSL--LAWSKGT-PELVIGNNAGNIVIYNHGTSRRII-------VMGKHQRRGTQIAVTLEDY-VILCDCDN 180 (615)
T ss_pred HhccCcchHHH--HhhccCC-ccccccccccceEEEeccchhhhh-------hhcccccceeEEEecccce-eeecCcHH
Confidence 2222 233333 7899988 488999999999999988765432 3344899999999999875 44444443
No 447
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=91.95 E-value=8.8 Score=34.29 Aligned_cols=192 Identities=12% Similarity=0.061 Sum_probs=104.9
Q ss_pred EEEEEeCCCeEEEEeccCceeeee--------eecccccEEE--EEec-CCCeEEEEeCC---CcEEEEEcCCCC-----
Q 035558 57 RIGTSSIDTTCTIWDIEREAVDTQ--------LIAHDKEVYD--IAWG-GVGVFASVSAD---GSVRVFDLRDKE----- 117 (253)
Q Consensus 57 ~l~~~~~dg~i~vwd~~~~~~~~~--------~~~~~~~v~~--~~~~-~~~~l~~~~~d---g~i~i~d~~~~~----- 117 (253)
-+++-..+|.+++|-.+....... +......|+. +++. +++.++.+..+ +.|++|.+.-.-
T Consensus 64 A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~ 143 (753)
T PF11635_consen 64 ACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQ 143 (753)
T ss_pred EEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCc
Confidence 355567889999997743221111 1112344554 4544 56555555544 788887653110
Q ss_pred ---C---eeeeec----c--C--C-----------CCCCeeEEEeeC----C--CCCEEEEEE-eC--CCeEEEEECCCC
Q 035558 118 ---H---STIIYE----S--S--E-----------PDTPLVRLGWNK----Q--DPRYMATII-MD--SAKVVVLDIRFP 163 (253)
Q Consensus 118 ---~---~~~~~~----~--~--~-----------~~~~i~~~~~~~----~--~~~~l~~~~-~~--~~~i~~~d~~~~ 163 (253)
. +..... . . . .-..++.+.|-+ . ....+++.+ .+ ++.|.-|.++..
T Consensus 144 ~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~ 223 (753)
T PF11635_consen 144 QIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREE 223 (753)
T ss_pred cCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEcc
Confidence 0 111100 0 0 0 113666777765 2 233444443 33 445899988764
Q ss_pred CCCeeeec-------------------------ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCC----C
Q 035558 164 TLPVVELQ-------------------------RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEG----G 214 (253)
Q Consensus 164 ~~~~~~~~-------------------------~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~ 214 (253)
...++... ...+.|.+++...-+ .+++..-.||+|.++|..+.+..... .
T Consensus 224 ~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~-~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~ 302 (753)
T PF11635_consen 224 QQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELD-IVVAFAFSDGSIEFRDRNTMKELNETRTNGE 302 (753)
T ss_pred CcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccC-cEEEEEEcCCeEEEEecCcchhhcccccccC
Confidence 43222211 012456677766666 58899999999999999887543311 0
Q ss_pred CC--------CeeeccCCCceeEEEEcCCCCceEEEEcCCcEE
Q 035558 215 LD--------PILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQ 249 (253)
Q Consensus 215 ~~--------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~ 249 (253)
.. .-..+....++.-++|||.+-.++....++.+.
T Consensus 303 ~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 303 PPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred CccccccccccccccccCCCCceEEECcccceEEEEecCCCce
Confidence 00 011122233555689999998888888888754
No 448
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.89 E-value=6 Score=32.25 Aligned_cols=148 Identities=10% Similarity=0.120 Sum_probs=72.8
Q ss_pred eeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCee--e
Q 035558 45 LTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHST--I 121 (253)
Q Consensus 45 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~--~ 121 (253)
...+..+ +++.+++.+.....++-||-....-...-......+..+.+. ++..++++ .+|.+.. ....++... .
T Consensus 241 f~~v~~~-~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRS-PDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFD 317 (398)
T ss_pred eeeEEEc-CCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccc
Confidence 3444555 566666665433222334432110011111234568889998 77777655 5565443 233332110 1
Q ss_pred eeccC--CCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeee---cccccceeEEEEecCCCCeEEEecCC
Q 035558 122 IYESS--EPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVEL---QRHQASVNAIAWAPHSSCHICTAGDD 196 (253)
Q Consensus 122 ~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~d 196 (253)
+.... .....+..+.|.+ ++..+++ +..|. +..- ...++. -... ..-...++.+.|.+++ ..+..+.+
T Consensus 318 f~~~~~~~~~~~l~~v~~~~-d~~~~a~-G~~G~-v~~s-~D~G~t-W~~~~~~~~~~~~ly~v~f~~~~--~g~~~G~~ 390 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRS-KKEAWAA-GGSGI-LLRS-TDGGKS-WKRDKGADNIAANLYSVKFFDDK--KGFVLGND 390 (398)
T ss_pred eeecccCCCCcceEEEEEcC-CCcEEEE-ECCCc-EEEe-CCCCcc-eeEccccCCCCcceeEEEEcCCC--ceEEEeCC
Confidence 11111 1223588898886 6665555 45554 3333 332221 1221 2224568899998776 35555667
Q ss_pred CcEEEE
Q 035558 197 SQALIW 202 (253)
Q Consensus 197 g~i~iw 202 (253)
|.|.-|
T Consensus 391 G~il~~ 396 (398)
T PLN00033 391 GVLLRY 396 (398)
T ss_pred cEEEEe
Confidence 877654
No 449
>PRK10115 protease 2; Provisional
Probab=91.48 E-value=9.5 Score=33.70 Aligned_cols=114 Identities=11% Similarity=0.166 Sum_probs=64.3
Q ss_pred CCeeEEEecCCCCCEEEEEeC-CC----eEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCC------CcEEE
Q 035558 43 GPLTSFDWNEAEPRRIGTSSI-DT----TCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSAD------GSVRV 110 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~-dg----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d------g~i~i 110 (253)
-.+..+.|+ +++++|+.+.. +| .|++.|+.+++.+........ ..++|. +++.|+....+ ..|..
T Consensus 127 ~~l~~~~~S-pdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAIT-PDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEEC-CCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 346778898 78888776532 22 688999988764322211111 458999 77766554432 35778
Q ss_pred EEcCCCC-CeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC--CeEEEEECC
Q 035558 111 FDLRDKE-HSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS--AKVVVLDIR 161 (253)
Q Consensus 111 ~d~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~--~~i~~~d~~ 161 (253)
+++.++. ....+...... ...-..+.+.++.+++..+..+ ..+.+++..
T Consensus 204 h~lgt~~~~d~lv~~e~~~--~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDD--TFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EECCCChhHCeEEEeeCCC--CEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 8888773 12233332221 2222233343666655544433 248888854
No 450
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.38 E-value=7.1 Score=32.08 Aligned_cols=151 Identities=11% Similarity=0.014 Sum_probs=76.8
Q ss_pred EEEec-CCCeEEEEeCCCcEEEEEcCCCCCeee--eeccCC-CCCCee-EEEeeCCCCCEEEEEEeCCCeEE-EEECCCC
Q 035558 90 DIAWG-GVGVFASVSADGSVRVFDLRDKEHSTI--IYESSE-PDTPLV-RLGWNKQDPRYMATIIMDSAKVV-VLDIRFP 163 (253)
Q Consensus 90 ~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~-~~~~i~-~~~~~~~~~~~l~~~~~~~~~i~-~~d~~~~ 163 (253)
.+-.. +++.+..-+. ..+.++++.+...... ....++ ....|+ ++..-. .+.-+.+++.||. |. .+|.+..
T Consensus 225 qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~-vsQWFdvr~~ 301 (733)
T COG4590 225 QLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGL-VSQWFDVRRD 301 (733)
T ss_pred hhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCc-eeeeeeeecC
Confidence 33444 5665555443 5677777765532111 111011 001122 112122 5667788888998 55 4577765
Q ss_pred CCCe----eeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558 164 TLPV----VELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW 239 (253)
Q Consensus 164 ~~~~----~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 239 (253)
..+. ..++-...++..+.-..+. +-+++-+..|++.++.....+.. ....--..+.-+++||.+.++
T Consensus 302 ~~p~l~h~R~f~l~pa~~~~l~pe~~r-kgF~~l~~~G~L~~f~st~~~~l--------L~~~~~~~~~~~~~Sp~~~~L 372 (733)
T COG4590 302 GQPHLNHIRNFKLAPAEVQFLLPETNR-KGFYSLYRNGTLQSFYSTSEKLL--------LFERAYQAPQLVAMSPNQAYL 372 (733)
T ss_pred CCCcceeeeccccCcccceeecccccc-ceEEEEcCCCceeeeecccCcce--------ehhhhhcCcceeeeCcccchh
Confidence 4331 1111122333333322232 46778888899988866553321 222223356678899998755
Q ss_pred EEEEcCCcEEEEEC
Q 035558 240 VAIAFSTKLQILRV 253 (253)
Q Consensus 240 ~~~~~~~~i~vw~l 253 (253)
++ -..+.++++.+
T Consensus 373 l~-e~~gki~~~~l 385 (733)
T COG4590 373 LS-EDQGKIRLAQL 385 (733)
T ss_pred ee-ecCCceEEEEe
Confidence 53 44556776653
No 451
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.32 E-value=2.6 Score=34.39 Aligned_cols=151 Identities=13% Similarity=0.156 Sum_probs=83.9
Q ss_pred CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCee-EEEecCCCCCEEEEEeCCCeEEEE-eccCce---
Q 035558 3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLT-SFDWNEAEPRRIGTSSIDTTCTIW-DIEREA--- 76 (253)
Q Consensus 3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~vw-d~~~~~--- 76 (253)
++++.|..-++ .+.++++.+. ..+..+....... +....|+ .+..- ..+..++.++.||.|.-| |++.+.
T Consensus 230 Pdg~~LYv~~g~~~~v~~L~~r--~l~~rkl~~dspg-~~~~~Vte~l~lL-~Gg~SLLv~~~dG~vsQWFdvr~~~~p~ 305 (733)
T COG4590 230 PDGKTLYVRTGSELVVALLDKR--SLQIRKLVDDSPG-DSRHQVTEQLYLL-SGGFSLLVVHEDGLVSQWFDVRRDGQPH 305 (733)
T ss_pred CCCCEEEEecCCeEEEEeeccc--ccchhhhhhcCCC-chHHHHHHHHHHH-hCceeEEEEcCCCceeeeeeeecCCCCc
Confidence 45666666555 8888888773 1222222222110 0001222 22222 356668888999999877 443321
Q ss_pred --eeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC
Q 035558 77 --VDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA 153 (253)
Q Consensus 77 --~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 153 (253)
.++.++-...++..+.-. +.+-+++-...|++..+.....+. .+... ..+ .+..++++| .++++++- +++
T Consensus 306 l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~--lL~~~-~~~-~~~~~~~Sp-~~~~Ll~e--~~g 378 (733)
T COG4590 306 LNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL--LLFER-AYQ-APQLVAMSP-NQAYLLSE--DQG 378 (733)
T ss_pred ceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc--eehhh-hhc-CcceeeeCc-ccchheee--cCC
Confidence 222333223445544444 566788888999999886655542 12111 111 566789999 77777753 333
Q ss_pred eEEEEECCCCC
Q 035558 154 KVVVLDIRFPT 164 (253)
Q Consensus 154 ~i~~~d~~~~~ 164 (253)
.++++.+.+..
T Consensus 379 ki~~~~l~Nr~ 389 (733)
T COG4590 379 KIRLAQLENRN 389 (733)
T ss_pred ceEEEEecCCC
Confidence 39999887643
No 452
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=90.79 E-value=7.5 Score=31.33 Aligned_cols=187 Identities=14% Similarity=0.107 Sum_probs=98.1
Q ss_pred ceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEec---CCCCCE--EEEEe-CC---CeEEEEeccC
Q 035558 6 DLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWN---EAEPRR--IGTSS-ID---TTCTIWDIER 74 (253)
Q Consensus 6 ~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~--l~~~~-~d---g~i~vwd~~~ 74 (253)
.++++.. + -+.+||++. +.++.+.. +.++.+..- +-+++. |+.++ .+ ..|++|.+..
T Consensus 69 SlIigTdK~~GL~VYdL~G-----k~lq~~~~-------Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~ 136 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLDG-----KELQSLPV-------GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDP 136 (381)
T ss_dssp -EEEEEETTTEEEEEETTS------EEEEE-S-------S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEET
T ss_pred ceEEEEeCCCCEEEEcCCC-----cEEEeecC-------CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecC
Confidence 3444444 4 999999998 44555532 223332221 012332 34443 32 4699997753
Q ss_pred --ceeeeeee-------cccccEEEEEec----CCC-eEEEEeCCCcEEEEEcCCCCC--e--eeeeccCCCCCCeeEEE
Q 035558 75 --EAVDTQLI-------AHDKEVYDIAWG----GVG-VFASVSADGSVRVFDLRDKEH--S--TIIYESSEPDTPLVRLG 136 (253)
Q Consensus 75 --~~~~~~~~-------~~~~~v~~~~~~----~~~-~l~~~~~dg~i~i~d~~~~~~--~--~~~~~~~~~~~~i~~~~ 136 (253)
+. +..+. .....+..+|+- ++. +.+....+|.+..|.+..... + ..+..... .+.+..|.
T Consensus 137 ~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCV 214 (381)
T PF02333_consen 137 DTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCV 214 (381)
T ss_dssp TTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEE
T ss_pred CCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEE
Confidence 32 22221 112346777764 333 566677899999998863221 1 12222222 23778888
Q ss_pred eeCCCCCEEEEEEeCCCeEEEEECCCCCCC----eeeecc--cccceeEEEEe--cCCCCeEEE-ecCCCcEEEEeccCC
Q 035558 137 WNKQDPRYMATIIMDSAKVVVLDIRFPTLP----VVELQR--HQASVNAIAWA--PHSSCHICT-AGDDSQALIWDLSSM 207 (253)
Q Consensus 137 ~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~----~~~~~~--~~~~i~~~~~~--~~~~~~l~~-~~~dg~i~iwd~~~~ 207 (253)
... ....|..+-.+-+ |.-|+.+-.... +....+ ....|-.|++- +++..||+. .-.+++..||+.+..
T Consensus 215 VDD-e~g~LYvgEE~~G-IW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 215 VDD-ETGRLYVGEEDVG-IWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EET-TTTEEEEEETTTE-EEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred Eec-ccCCEEEecCccE-EEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 887 6678888888877 888888643211 111211 23466777764 343235554 446889999998864
Q ss_pred C
Q 035558 208 G 208 (253)
Q Consensus 208 ~ 208 (253)
.
T Consensus 293 ~ 293 (381)
T PF02333_consen 293 N 293 (381)
T ss_dssp -
T ss_pred C
Confidence 3
No 453
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.70 E-value=0.14 Score=44.81 Aligned_cols=136 Identities=13% Similarity=0.109 Sum_probs=73.4
Q ss_pred CeEEEEeccCcee-eeeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCC--CCCe--eeeeccCCCCCCeeEEEe
Q 035558 65 TTCTIWDIEREAV-DTQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRD--KEHS--TIIYESSEPDTPLVRLGW 137 (253)
Q Consensus 65 g~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~--~~~~--~~~~~~~~~~~~i~~~~~ 137 (253)
+.+++-+.++... ...+++..+.+-.+.|- +...+. -.-|.+.+||+.. ++.. ..+.........+.-+.|
T Consensus 111 ~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~w 188 (1283)
T KOG1916|consen 111 NGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSW 188 (1283)
T ss_pred hhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeee
Confidence 4466655543321 12345667788888886 333333 3446788998864 2211 111111122224455666
Q ss_pred eCC--CCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEE-----------EecCCCCeEEEecCCCcEEEEec
Q 035558 138 NKQ--DPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIA-----------WAPHSSCHICTAGDDSQALIWDL 204 (253)
Q Consensus 138 ~~~--~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~~l~~~~~dg~i~iwd~ 204 (253)
.|. +.-++-.+-.++. +++....... ...+..|...+..++ .+||| +.++.++.||.+++|.+
T Consensus 189 cp~~~~~~~ic~~~~~~~-i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 189 CPIAVNKVYICYGLKGGE-IRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFYQI 264 (1283)
T ss_pred cccccccceeeeccCCCc-eeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCccceeee
Confidence 653 2233333333444 7776665432 234445655444433 57888 68899999999988876
Q ss_pred cC
Q 035558 205 SS 206 (253)
Q Consensus 205 ~~ 206 (253)
.-
T Consensus 265 yi 266 (1283)
T KOG1916|consen 265 YI 266 (1283)
T ss_pred ee
Confidence 53
No 454
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.64 E-value=1.8 Score=36.94 Aligned_cols=67 Identities=13% Similarity=0.134 Sum_probs=39.7
Q ss_pred CCCEEEEEEeCCCeEEEEECCC---CCCCeeee--c--------------------ccccceeEEEEec----CCCCeEE
Q 035558 141 DPRYMATIIMDSAKVVVLDIRF---PTLPVVEL--Q--------------------RHQASVNAIAWAP----HSSCHIC 191 (253)
Q Consensus 141 ~~~~l~~~~~~~~~i~~~d~~~---~~~~~~~~--~--------------------~~~~~i~~~~~~~----~~~~~l~ 191 (253)
+...++++..||+ +....... ........ . ........++.++ +. .+|+
T Consensus 157 ~~~~l~v~~~dG~-ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 234 (547)
T PF11715_consen 157 SEANLVVSLQDGG-LLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDD-TFLF 234 (547)
T ss_dssp SSSBEEEEESSS--EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETT-TEEE
T ss_pred CCCEEEEEECCCC-eEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCC-CEEE
Confidence 5678888888998 77666654 11101100 0 0112345555555 44 5999
Q ss_pred EecCCCcEEEEeccCCCC
Q 035558 192 TAGDDSQALIWDLSSMGQ 209 (253)
Q Consensus 192 ~~~~dg~i~iwd~~~~~~ 209 (253)
+.+.|+++|+||+.++..
T Consensus 235 tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EEETTSEEEEEETTTTCE
T ss_pred EEeCCCeEEEEECCCCeE
Confidence 999999999999999876
No 455
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.59 E-value=4.3 Score=28.70 Aligned_cols=27 Identities=15% Similarity=0.290 Sum_probs=21.1
Q ss_pred ceeEEEEcCCC-----C-ceEEEEcCCcEEEEE
Q 035558 226 EIEQLQWSSSQ-----P-DWVAIAFSTKLQILR 252 (253)
Q Consensus 226 ~v~~~~~~~~~-----~-~~~~~~~~~~i~vw~ 252 (253)
.+.+++|||.| + .|++...++.+.||.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~ 119 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYG 119 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEe
Confidence 78999999954 2 355678889999885
No 456
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.54 E-value=7.2 Score=30.68 Aligned_cols=108 Identities=4% Similarity=-0.103 Sum_probs=53.0
Q ss_pred CCCEEEEEeCCC-----eEEEEeccCcee---eeeeecccccE--EEEEecCCCeEEEEeC-----CCcEEEEEcCCCCC
Q 035558 54 EPRRIGTSSIDT-----TCTIWDIEREAV---DTQLIAHDKEV--YDIAWGGVGVFASVSA-----DGSVRVFDLRDKEH 118 (253)
Q Consensus 54 ~~~~l~~~~~dg-----~i~vwd~~~~~~---~~~~~~~~~~v--~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~ 118 (253)
++.+++.|+.++ .+..+|+.+.+- ...+..-..+. .+++..++.+++.|+. ...+..||+.+.+-
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 356667776543 566677765542 11111111111 1222226677777764 23588888887652
Q ss_pred eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC---eEEEEECCCCC
Q 035558 119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA---KVVVLDIRFPT 164 (253)
Q Consensus 119 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~---~i~~~d~~~~~ 164 (253)
. .+....... .....+... ++.+.+.|+.++. .+..||.++.+
T Consensus 152 ~-~~~~~p~~~-r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 152 F-ELPDFPGEP-RVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred e-ECCCCCCCC-CCcceEEEE-CCEEEEEcCCCCccccceEEEecCCCe
Confidence 2 221111111 111122222 5677777776542 25688887644
No 457
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=90.35 E-value=8.3 Score=31.10 Aligned_cols=197 Identities=13% Similarity=0.063 Sum_probs=99.1
Q ss_pred EEEecC--CCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEE--EEEec---CCCe--EEEEe-CC---CcEEEEEc
Q 035558 47 SFDWNE--AEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVY--DIAWG---GVGV--FASVS-AD---GSVRVFDL 113 (253)
Q Consensus 47 ~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~--~~~~~---~~~~--l~~~~-~d---g~i~i~d~ 113 (253)
+|-.+| |..++++....++-+.+||++ |+.++.+.. +.++ ++.+. .++. |+.++ .+ .+|++|.+
T Consensus 58 AIWvnp~dp~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~i 134 (381)
T PF02333_consen 58 AIWVNPADPAKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRI 134 (381)
T ss_dssp EEE--SS-GGG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEE
T ss_pred cEecCCCCcccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEe
Confidence 454554 445678888888999999997 566666642 2333 33322 3332 34443 32 46999988
Q ss_pred CCCCC-eeeeeccC----CCCCCeeEEEe--eCCCCCEEEE-EEeCCCeEEEEECCCCC------CCeeeecccccceeE
Q 035558 114 RDKEH-STIIYESS----EPDTPLVRLGW--NKQDPRYMAT-IIMDSAKVVVLDIRFPT------LPVVELQRHQASVNA 179 (253)
Q Consensus 114 ~~~~~-~~~~~~~~----~~~~~i~~~~~--~~~~~~~l~~-~~~~~~~i~~~d~~~~~------~~~~~~~~~~~~i~~ 179 (253)
..... ...+.... .....++.+++ +|.++.+.+. ...+|. +..|-+.... ..++++.. ...+-.
T Consensus 135 d~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~-~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EG 212 (381)
T PF02333_consen 135 DPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGR-VEQYELTDDGDGKVSATLVREFKV-GSQPEG 212 (381)
T ss_dssp ETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSE-EEEEEEEE-TTSSEEEEEEEEEE--SS-EEE
T ss_pred cCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCce-EEEEEEEeCCCCcEeeEEEEEecC-CCcceE
Confidence 64321 11111100 11124667776 4445655554 444554 8777765322 12445543 346778
Q ss_pred EEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeec---cCCCceeEEEEc--CCCC-ceEEEE-cCCcEEEEE
Q 035558 180 IAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAY---TAGAEIEQLQWS--SSQP-DWVAIA-FSTKLQILR 252 (253)
Q Consensus 180 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~--~~~~-~~~~~~-~~~~i~vw~ 252 (253)
+...... ..|+.+-++--|.-|+.+...... ....... .....|-.|+.- +++. +|++++ .++...||+
T Consensus 213 CVVDDe~-g~LYvgEE~~GIW~y~Aep~~~~~---~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 213 CVVDDET-GRLYVGEEDVGIWRYDAEPEGGND---RTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp EEEETTT-TEEEEEETTTEEEEEESSCCC-S-----EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred EEEeccc-CCEEEecCccEEEEEecCCCCCCc---ceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 8888877 489999999877777776433221 0011111 134567777763 3443 555544 455677775
No 458
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.21 E-value=4.1 Score=27.32 Aligned_cols=106 Identities=11% Similarity=0.167 Sum_probs=60.5
Q ss_pred Eec-CCCeEEEEeCCCcEEEEEcCCCCC--------eeeeeccCCCCCCeeEEE---eeCC-CCCEEEEEEeCCCeEEEE
Q 035558 92 AWG-GVGVFASVSADGSVRVFDLRDKEH--------STIIYESSEPDTPLVRLG---WNKQ-DPRYMATIIMDSAKVVVL 158 (253)
Q Consensus 92 ~~~-~~~~l~~~~~dg~i~i~d~~~~~~--------~~~~~~~~~~~~~i~~~~---~~~~-~~~~l~~~~~~~~~i~~~ 158 (253)
.|. ....|+.++.-|+|.+++...... ...+ .....|++++ |.|. +...|+.|+.. . +..|
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L----Nin~~italaaG~l~~~~~~D~LliGt~t-~-llaY 78 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL----NINQEITALAAGRLKPDDGRDCLLIGTQT-S-LLAY 78 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE----ECCCceEEEEEEecCCCCCcCEEEEeccc-e-EEEE
Confidence 455 455788888889999998764431 1111 1222566664 4432 34566666554 4 9999
Q ss_pred ECCCCCCCeeeecccccceeEEEEecC---CCCeEEEecCCCcEEEEeccC
Q 035558 159 DIRFPTLPVVELQRHQASVNAIAWAPH---SSCHICTAGDDSQALIWDLSS 206 (253)
Q Consensus 159 d~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~dg~i~iwd~~~ 206 (253)
|...... +. .+.-...++++.+-.- ...++++|+ +..|.-||.+.
T Consensus 79 DV~~N~d-~F-yke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G 126 (136)
T PF14781_consen 79 DVENNSD-LF-YKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEG 126 (136)
T ss_pred EcccCch-hh-hhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCC
Confidence 9987664 22 2223456777766431 112444444 56677666554
No 459
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=89.74 E-value=7.3 Score=29.52 Aligned_cols=152 Identities=14% Similarity=0.130 Sum_probs=85.5
Q ss_pred CeeEEEecCCCCCEEEEEe---CCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEE-cCCCCC
Q 035558 44 PLTSFDWNEAEPRRIGTSS---IDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFD-LRDKEH 118 (253)
Q Consensus 44 ~v~~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d-~~~~~~ 118 (253)
.+.+.+++ ++++.++... ....++++... ....... ....+..-.|. ++...+....+...+++. ...+..
T Consensus 25 ~~~s~AvS-~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVS-PDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEEC-CCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 67889999 7888776655 33355555443 2222221 22367777888 877776666666666664 233332
Q ss_pred eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC--CCeEEEEECCCCC--------CCeeeecccccceeEEEEecCCCC
Q 035558 119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMD--SAKVVVLDIRFPT--------LPVVELQRHQASVNAIAWAPHSSC 188 (253)
Q Consensus 119 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~--~~~i~~~d~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~ 188 (253)
.............|..+.++| ++..++....+ +..|.+--+.... .+..........+..+.|.+++ .
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~ 178 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-T 178 (253)
T ss_pred eeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-E
Confidence 222222222222899999999 88877766532 2236655432111 1122222334678999999998 4
Q ss_pred eEEEecC-CCcEEE
Q 035558 189 HICTAGD-DSQALI 201 (253)
Q Consensus 189 ~l~~~~~-dg~i~i 201 (253)
+++.+.. ++.+..
T Consensus 179 L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 179 LVVLGRSAGGPVVR 192 (253)
T ss_pred EEEEeCCCCCceeE
Confidence 6555543 443444
No 460
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=89.61 E-value=9.1 Score=30.44 Aligned_cols=52 Identities=4% Similarity=-0.033 Sum_probs=26.3
Q ss_pred CCCEEEEEeCC-----------CeEEEEeccCceeeeeeecccc---cEEEEEecCCCeEEEEeCC
Q 035558 54 EPRRIGTSSID-----------TTCTIWDIEREAVDTQLIAHDK---EVYDIAWGGVGVFASVSAD 105 (253)
Q Consensus 54 ~~~~l~~~~~d-----------g~i~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~l~~~~~d 105 (253)
++.+.+.|+.+ ..+..||..+.+-......... ....+...++.+.+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 46777777753 2467788876652221101111 1111212277788887764
No 461
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.39 E-value=3.8 Score=28.98 Aligned_cols=31 Identities=16% Similarity=0.478 Sum_probs=25.8
Q ss_pred ceeEEEEecCC-----CCeEEEecCCCcEEEEeccC
Q 035558 176 SVNAIAWAPHS-----SCHICTAGDDSQALIWDLSS 206 (253)
Q Consensus 176 ~i~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~ 206 (253)
.+.+++|+|.| ..+|++...++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68899999943 23889999999999998774
No 462
>PLN02193 nitrile-specifier protein
Probab=89.08 E-value=12 Score=31.28 Aligned_cols=150 Identities=11% Similarity=-0.002 Sum_probs=70.8
Q ss_pred CCCEEEEEeCC-----CeEEEEeccCceeee--eeecccccE--EEEEecCCCeEEEEeCCC-----cEEEEEcCCCCCe
Q 035558 54 EPRRIGTSSID-----TTCTIWDIEREAVDT--QLIAHDKEV--YDIAWGGVGVFASVSADG-----SVRVFDLRDKEHS 119 (253)
Q Consensus 54 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~--~~~~~~~~v--~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~ 119 (253)
++.+++.|+.+ ..+.++|+.+.+-.. .+.....+. .+++..++.+++.|+.++ .+..||+.+.+-.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 45666667654 357788887765222 111001111 122222667777777543 3677887765421
Q ss_pred eeeec--cCCCCCCeeEEEeeCCCCCEEEEEEeCC---CeEEEEECCCCCC-Ceeeec--ccccceeEEEEecCCCCeEE
Q 035558 120 TIIYE--SSEPDTPLVRLGWNKQDPRYMATIIMDS---AKVVVLDIRFPTL-PVVELQ--RHQASVNAIAWAPHSSCHIC 191 (253)
Q Consensus 120 ~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~~~---~~i~~~d~~~~~~-~~~~~~--~~~~~i~~~~~~~~~~~~l~ 191 (253)
..... ....... ..++.. ++++++.++.++ ..+.+||+.+.+- .+.... .......+++. -++ ++++
T Consensus 308 ~~~~~~~~~~~R~~-~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~-~~~-~iyv 382 (470)
T PLN02193 308 HCSTPGDSFSIRGG-AGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA-VGK-HIVI 382 (470)
T ss_pred eCCCCCCCCCCCCC-cEEEEE--CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE-ECC-EEEE
Confidence 11100 0011111 122222 566777776543 2389999887541 111110 00111122222 233 5777
Q ss_pred EecCC--------------CcEEEEeccCCC
Q 035558 192 TAGDD--------------SQALIWDLSSMG 208 (253)
Q Consensus 192 ~~~~d--------------g~i~iwd~~~~~ 208 (253)
.|+.+ ..+.+||+.+..
T Consensus 383 ~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 383 FGGEIAMDPLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred ECCccCCccccccCccceeccEEEEEcCcCE
Confidence 77753 247888887654
No 463
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=89.07 E-value=8 Score=29.09 Aligned_cols=137 Identities=13% Similarity=0.064 Sum_probs=69.8
Q ss_pred EEEEeccCceeeeeeec-ccccEEEEEec-CCCeEEEEeC-C--CcEEEEEcCCCCCe-eeeec--cCCCCCCeeEEEee
Q 035558 67 CTIWDIEREAVDTQLIA-HDKEVYDIAWG-GVGVFASVSA-D--GSVRVFDLRDKEHS-TIIYE--SSEPDTPLVRLGWN 138 (253)
Q Consensus 67 i~vwd~~~~~~~~~~~~-~~~~v~~~~~~-~~~~l~~~~~-d--g~i~i~d~~~~~~~-~~~~~--~~~~~~~i~~~~~~ 138 (253)
-.+||+.+++... +.. ......+-.+. +|+++.+|+. + ..+++++....... ..... ......+--+..--
T Consensus 48 s~~yD~~tn~~rp-l~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRP-LTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEe-ccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 3478888776332 221 11122222344 8889988875 2 34777776541100 01100 01111122333444
Q ss_pred CCCCCEEEEEEeCCCeEEEEECCCCC-CCee--eecc-----cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558 139 KQDPRYMATIIMDSAKVVVLDIRFPT-LPVV--ELQR-----HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 139 ~~~~~~l~~~~~~~~~i~~~d~~~~~-~~~~--~~~~-----~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
| +|+.|+.|+.......+|.-+... .... .+.. ...---.+...|+| ++++.+..+. .|||..+.+
T Consensus 127 ~-DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG-~lFi~an~~s--~i~d~~~n~ 200 (243)
T PF07250_consen 127 P-DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDG-NLFIFANRGS--IIYDYKTNT 200 (243)
T ss_pred C-CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCC-CEEEEEcCCc--EEEeCCCCe
Confidence 5 899999998887646666653221 1111 1110 01112346678999 6888887654 456777664
No 464
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=88.61 E-value=11 Score=30.28 Aligned_cols=98 Identities=7% Similarity=0.021 Sum_probs=50.0
Q ss_pred CeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-----e---eeeeeec----ccccEEEEEec-CCCeEEEEeCC-----
Q 035558 44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-----A---VDTQLIA----HDKEVYDIAWG-GVGVFASVSAD----- 105 (253)
Q Consensus 44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----~---~~~~~~~----~~~~v~~~~~~-~~~~l~~~~~d----- 105 (253)
....+++. +++ +++ +......++.|.... + .+..+.. +......++|. ++.+.++-+..
T Consensus 73 ~p~Gi~~~-~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~ 149 (367)
T TIGR02604 73 MVTGLAVA-VGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV 149 (367)
T ss_pred CccceeEe-cCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee
Confidence 45688887 666 444 444433334354321 1 1122222 13446788888 87766654421
Q ss_pred --------------CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE
Q 035558 106 --------------GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII 149 (253)
Q Consensus 106 --------------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 149 (253)
|.|.-+|..+.+. ..+. .+. .....++|+| +++++++-.
T Consensus 150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a--~G~-rnp~Gl~~d~-~G~l~~tdn 202 (367)
T TIGR02604 150 TRPGTSDESRQGLGGGLFRYNPDGGKL-RVVA--HGF-QNPYGHSVDS-WGDVFFCDN 202 (367)
T ss_pred ccCCCccCcccccCceEEEEecCCCeE-EEEe--cCc-CCCccceECC-CCCEEEEcc
Confidence 3344444444331 1121 111 2456789999 888876644
No 465
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=87.93 E-value=14 Score=30.66 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=34.4
Q ss_pred CeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC-Ceeeec-----ccccceeEEEEecCC
Q 035558 131 PLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL-PVVELQ-----RHQASVNAIAWAPHS 186 (253)
Q Consensus 131 ~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~-----~~~~~i~~~~~~~~~ 186 (253)
..+.|+|.| ++++|++--..|. |++++...... .+..+. ........|+++|+-
T Consensus 31 ~Pw~maflP-DG~llVtER~~G~-I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGP-DNQLWVTERATGK-ILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcC-CCeEEEEEecCCE-EEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 567899999 7876665433576 98887654321 121111 135678899999874
No 466
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=87.89 E-value=2.3 Score=21.47 Aligned_cols=30 Identities=13% Similarity=0.138 Sum_probs=21.4
Q ss_pred CCCEEEE-EeCCCeEEEEeccCceeeeeeec
Q 035558 54 EPRRIGT-SSIDTTCTIWDIEREAVDTQLIA 83 (253)
Q Consensus 54 ~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~ 83 (253)
++++|++ ...++.|.++|..+++.+..+..
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 4454444 44578999999988887777664
No 467
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=87.57 E-value=22 Score=32.35 Aligned_cols=148 Identities=9% Similarity=0.013 Sum_probs=82.6
Q ss_pred CCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCe
Q 035558 54 EPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPL 132 (253)
Q Consensus 54 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i 132 (253)
.++.|+-... ..||+++-. .....+.. .+.++....+ +...++.++.++.+...++..... .. .....-+..|
T Consensus 460 ~g~~lvQvTs-~~iRl~ss~--~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l-~e-~~~~~~e~ev 533 (1096)
T KOG1897|consen 460 NGNQLVQVTS-NSIRLVSSA--GLRSEWRP-PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGL-RE-VSHKEFEYEV 533 (1096)
T ss_pred CCceEEEEec-ccEEEEcch--hhhhcccC-CCceEEEEEeecceEEEEecCccEEEEEEeeccce-ee-eeeheeccee
Confidence 3444444433 346666654 22333442 3334444444 666777888788787777776651 11 1222334589
Q ss_pred eEEEeeCC--CCC---EEEEEEeCCCeEEEEECCCCCCCeee-ecc--cccceeEEEEecCCCCeEEEecCCCcEEEEec
Q 035558 133 VRLGWNKQ--DPR---YMATIIMDSAKVVVLDIRFPTLPVVE-LQR--HQASVNAIAWAPHSSCHICTAGDDSQALIWDL 204 (253)
Q Consensus 133 ~~~~~~~~--~~~---~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~ 204 (253)
.|+.++|- +.+ ++++|..+...+.+.-+.......+. +.. -...|.-.++-.+. .+|.++..||.+.-|-+
T Consensus 534 aCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~-~yLlvalgdG~l~~fv~ 612 (1096)
T KOG1897|consen 534 ACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDI-HYLLVALGDGALLYFVL 612 (1096)
T ss_pred EEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccc-eEEEEEcCCceEEEEEE
Confidence 99999874 333 78888888874444444332221121 111 11234445555555 69999999999987766
Q ss_pred cCCC
Q 035558 205 SSMG 208 (253)
Q Consensus 205 ~~~~ 208 (253)
....
T Consensus 613 d~~t 616 (1096)
T KOG1897|consen 613 DINT 616 (1096)
T ss_pred Eccc
Confidence 5443
No 468
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=87.15 E-value=1.9 Score=20.48 Aligned_cols=26 Identities=15% Similarity=0.004 Sum_probs=20.7
Q ss_pred CCEEEEEeCCCeEEEEeccCceeeee
Q 035558 55 PRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 55 ~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
+..++.++.+|.+..+|.++++.+..
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEE
Confidence 33677788899999999998886654
No 469
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=87.05 E-value=14 Score=29.39 Aligned_cols=106 Identities=15% Similarity=0.241 Sum_probs=53.9
Q ss_pred cEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeec----cCCCCCCeeEEEeeCC--CCCEEEEEEeCC-------
Q 035558 87 EVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYE----SSEPDTPLVRLGWNKQ--DPRYMATIIMDS------- 152 (253)
Q Consensus 87 ~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~~i~~~~~~~~--~~~~l~~~~~~~------- 152 (253)
..++|+|. +++++++ ...|.|++++ ..+.....+.. ....+.....++++|. ...+|.+.....
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 45789999 8776665 6699999999 33322112211 2234457899999982 223443333311
Q ss_pred -CeEEEEECCCCCC-------Ceeeecc---cccceeEEEEecCCCCeEEEecC
Q 035558 153 -AKVVVLDIRFPTL-------PVVELQR---HQASVNAIAWAPHSSCHICTAGD 195 (253)
Q Consensus 153 -~~i~~~d~~~~~~-------~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~~ 195 (253)
..|.-|....... .+..+.. ....-..|.|.|+| .+.++.+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCC
Confidence 1244444433210 0111121 23345679999999 55555543
No 470
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=86.72 E-value=23 Score=31.81 Aligned_cols=160 Identities=16% Similarity=0.229 Sum_probs=93.8
Q ss_pred CCeeEEEec---C---CCCCEEEEEeCCCeEEEEeccCc---------------eeeeeeec---ccccEEEEEec--CC
Q 035558 43 GPLTSFDWN---E---AEPRRIGTSSIDTTCTIWDIERE---------------AVDTQLIA---HDKEVYDIAWG--GV 96 (253)
Q Consensus 43 ~~v~~~~~~---~---~~~~~l~~~~~dg~i~vwd~~~~---------------~~~~~~~~---~~~~v~~~~~~--~~ 96 (253)
.+|..|+|. . ...++|++-. ...+.|+..+-. .++..+.. -..+..+++|+ +.
T Consensus 80 ~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~ 158 (765)
T PF10214_consen 80 SPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQ 158 (765)
T ss_pred CCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCcc
Confidence 789999987 2 1234565544 456777772211 12333331 23467789999 77
Q ss_pred CeEEEEeCCCcEEEEEcCCCC--CeeeeeccCC----------CCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC
Q 035558 97 GVFASVSADGSVRVFDLRDKE--HSTIIYESSE----------PDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT 164 (253)
Q Consensus 97 ~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~----------~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~ 164 (253)
..||.....|...+||+.... .......... ....-..+.|.+ +.+.|++++... +.++|+++..
T Consensus 159 ~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~r~~--l~~~d~~~~~ 235 (765)
T PF10214_consen 159 RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCNRSK--LMLIDFESNW 235 (765)
T ss_pred ceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEcCCc--eEEEECCCCC
Confidence 899999999999999992211 1011110000 112334678877 666777766554 9999998765
Q ss_pred CCe-eeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCC
Q 035558 165 LPV-VELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM 207 (253)
Q Consensus 165 ~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 207 (253)
... .........|..+.-+|..+.+++.-. ...|...++...
T Consensus 236 ~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~ 278 (765)
T PF10214_consen 236 QTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSS 278 (765)
T ss_pred ccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCC
Confidence 311 122223457888888887433333332 256777777763
No 471
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=86.35 E-value=29 Score=32.46 Aligned_cols=112 Identities=7% Similarity=0.002 Sum_probs=64.0
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-eeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCee
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-AVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHST 120 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~ 120 (253)
++|..++=- .| +|+++ ....|.+|+++.. ..+.. .--.-++.-.... -.++++.|.--..|.+.-........
T Consensus 1098 GtVsavceV--~G-~l~~~-~GqKI~v~~l~r~~~ligV-aFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rl 1172 (1366)
T KOG1896|consen 1098 GTVSAVCEV--RG-HLLSS-QGQKIIVRKLDRDSELIGV-AFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRL 1172 (1366)
T ss_pred cceEEEEEe--cc-EEEEc-cCcEEEEEEeccCCcceee-EEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEE
Confidence 788877643 44 45554 3468999999544 33221 1122334433444 46677777766777777665443222
Q ss_pred eeeccCCCCCCeeEEEeeCCCC-CEEEEEEeCCCeEEEEEC
Q 035558 121 IIYESSEPDTPLVRLGWNKQDP-RYMATIIMDSAKVVVLDI 160 (253)
Q Consensus 121 ~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~i~~~d~ 160 (253)
.+.......-.++++.|--+.+ -.++++..+++ |++|-.
T Consensus 1173 sL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rN-i~vy~Y 1212 (1366)
T KOG1896|consen 1173 SLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRN-IHVYMY 1212 (1366)
T ss_pred EEeecCCchhhceeeeeEEcCCeeEEEEEcCCCc-EEEEEe
Confidence 2222222333677888866333 35777778888 888754
No 472
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=86.16 E-value=15 Score=28.94 Aligned_cols=63 Identities=3% Similarity=0.013 Sum_probs=35.1
Q ss_pred CCCEEEEEeC-----CCeEEEEeccCcee--eeeeecccccEEEEEec-CCCeEEEEeCCCc----EEEEEcCCCC
Q 035558 54 EPRRIGTSSI-----DTTCTIWDIEREAV--DTQLIAHDKEVYDIAWG-GVGVFASVSADGS----VRVFDLRDKE 117 (253)
Q Consensus 54 ~~~~l~~~~~-----dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~----i~i~d~~~~~ 117 (253)
++.+.+.|+. ...+..||+.+.+- +..+... ......+.. ++.+++.|+.++. +..||.++.+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 4666677664 23578888876642 2222211 111222223 6778888877643 5678888765
No 473
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=85.80 E-value=3.2 Score=20.94 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=19.1
Q ss_pred CCCEEEEEEeCCCeEEEEECCCCCCCeeeec
Q 035558 141 DPRYMATIIMDSAKVVVLDIRFPTLPVVELQ 171 (253)
Q Consensus 141 ~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~ 171 (253)
+++.++++......|.++|..+... +..+.
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~-~~~i~ 31 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKV-IATIP 31 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeE-EEEEE
Confidence 5666666666555599999976542 44443
No 474
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.51 E-value=25 Score=32.63 Aligned_cols=32 Identities=3% Similarity=0.089 Sum_probs=25.8
Q ss_pred CeeEEEecCCCCCEEEEEeCCCeEEEEeccCce
Q 035558 44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA 76 (253)
Q Consensus 44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 76 (253)
....++|. +...+++.|+..|.|+++-...-+
T Consensus 37 ~~~~~afD-~~q~llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 37 TPSALAFD-PTQGLLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred CCcceeec-cccceEEEEEecccEEEecccceE
Confidence 45578888 788999999999999998765433
No 475
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=85.43 E-value=16 Score=28.55 Aligned_cols=116 Identities=10% Similarity=0.086 Sum_probs=68.0
Q ss_pred eeEEEecCCCCCEEEEEeCCCeEEEEeccC------c-eeeeeeec-----ccccEEEEEec-CCC------------eE
Q 035558 45 LTSFDWNEAEPRRIGTSSIDTTCTIWDIER------E-AVDTQLIA-----HDKEVYDIAWG-GVG------------VF 99 (253)
Q Consensus 45 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~------~-~~~~~~~~-----~~~~v~~~~~~-~~~------------~l 99 (253)
-..|+++ |.+.+-++....+...+||... . .++-.+.. .....+.+.|+ ... .+
T Consensus 25 ~WGia~~-p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYR-PGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEec-CCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 4689999 6677777777778999999861 1 12223321 12456777776 322 36
Q ss_pred EEEeCCCcEEEEEcCCCCC---e-eeeeccCCCCCCe-eEEEeeCC-CCCEEEEEEeCCCeEEEEECCC
Q 035558 100 ASVSADGSVRVFDLRDKEH---S-TIIYESSEPDTPL-VRLGWNKQ-DPRYMATIIMDSAKVVVLDIRF 162 (253)
Q Consensus 100 ~~~~~dg~i~i~d~~~~~~---~-~~~~~~~~~~~~i-~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~ 162 (253)
+.+++||+|.-|...-... . ..+... ...+.+ .-+++-.. .+++|..+....+.|.++|-.-
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~-s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f 171 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDA-SQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF 171 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEcc-CCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence 8889999999998543322 1 122211 111223 33555431 3567776666555599998654
No 476
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.07 E-value=2.6 Score=35.99 Aligned_cols=37 Identities=22% Similarity=0.234 Sum_probs=27.7
Q ss_pred CeeEEEecCC----CCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 44 PLTSFDWNEA----EPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 44 ~v~~~~~~~~----~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
....++.+ . +..++++.+.|+.+|+||+.+++++...
T Consensus 216 ~~~~~~~~-~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVS-SSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE------ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEe-cceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 44555665 4 6789999999999999999999885543
No 477
>PLN02153 epithiospecifier protein
Probab=85.02 E-value=18 Score=28.80 Aligned_cols=64 Identities=11% Similarity=0.123 Sum_probs=33.8
Q ss_pred CCCEEEEEeCC-----CeEEEEeccCceee--eeeec---cccc-EEEEEecCCCeEEEEeCC-----------CcEEEE
Q 035558 54 EPRRIGTSSID-----TTCTIWDIEREAVD--TQLIA---HDKE-VYDIAWGGVGVFASVSAD-----------GSVRVF 111 (253)
Q Consensus 54 ~~~~l~~~~~d-----g~i~vwd~~~~~~~--~~~~~---~~~~-v~~~~~~~~~~l~~~~~d-----------g~i~i~ 111 (253)
++.+++.|+.+ ..+.+||+.+.+-. ..+.. .... -.+++..++.+++.|+.+ ..+.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 45666777643 25778888765422 22210 0111 112222266777777754 247788
Q ss_pred EcCCCC
Q 035558 112 DLRDKE 117 (253)
Q Consensus 112 d~~~~~ 117 (253)
|..+.+
T Consensus 165 d~~~~~ 170 (341)
T PLN02153 165 NIADGK 170 (341)
T ss_pred ECCCCe
Confidence 887764
No 478
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=84.80 E-value=9.6 Score=25.61 Aligned_cols=105 Identities=10% Similarity=0.110 Sum_probs=59.4
Q ss_pred EecCCCCCEEEEEeCCCeEEEEeccCce--------eeeeeecccccEEEEEec------CCCeEEEEeCCCcEEEEEcC
Q 035558 49 DWNEAEPRRIGTSSIDTTCTIWDIEREA--------VDTQLIAHDKEVYDIAWG------GVGVFASVSADGSVRVFDLR 114 (253)
Q Consensus 49 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~--------~~~~~~~~~~~v~~~~~~------~~~~l~~~~~dg~i~i~d~~ 114 (253)
.|. .....|+.++.-|.|.|++..... .+..+. -...|++|+-. ..+.|+.|+. ..+..||+.
T Consensus 5 kfD-G~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~ 81 (136)
T PF14781_consen 5 KFD-GVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE 81 (136)
T ss_pred EeC-CCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence 444 344567888888999999876432 233333 34567776543 3456777664 469999999
Q ss_pred CCCCeeeeeccCCCCCCeeEEEee---CCCCCEEEEEEeCCCeEEEEECCC
Q 035558 115 DKEHSTIIYESSEPDTPLVRLGWN---KQDPRYMATIIMDSAKVVVLDIRF 162 (253)
Q Consensus 115 ~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~l~~~~~~~~~i~~~d~~~ 162 (253)
.+.. .+++ .-...+.++.+- .....++++|+ +.. |.-||...
T Consensus 82 ~N~d--~Fyk--e~~DGvn~i~~g~~~~~~~~l~ivGG-ncs-i~Gfd~~G 126 (136)
T PF14781_consen 82 NNSD--LFYK--EVPDGVNAIVIGKLGDIPSPLVIVGG-NCS-IQGFDYEG 126 (136)
T ss_pred cCch--hhhh--hCccceeEEEEEecCCCCCcEEEECc-eEE-EEEeCCCC
Confidence 8763 2222 112256666552 21234444443 333 66666543
No 479
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=84.71 E-value=3.4 Score=20.63 Aligned_cols=26 Identities=15% Similarity=0.017 Sum_probs=21.9
Q ss_pred EEEEEeCCCeEEEEeccCceeeeeee
Q 035558 57 RIGTSSIDTTCTIWDIEREAVDTQLI 82 (253)
Q Consensus 57 ~l~~~~~dg~i~vwd~~~~~~~~~~~ 82 (253)
.++.++.+|.|+-.|.++|+.+..++
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeee
Confidence 45667899999999999999887776
No 480
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=84.29 E-value=21 Score=29.16 Aligned_cols=174 Identities=13% Similarity=0.189 Sum_probs=86.8
Q ss_pred cEEEEEccCCccccceee-eecCCCCccccCCeeEEEecCCCCCEEEEEeCCC-----------eEEEEeccCceee--e
Q 035558 14 FLRVWRISDEDRRVELKS-LLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT-----------TCTIWDIEREAVD--T 79 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----------~i~vwd~~~~~~~--~ 79 (253)
.++++|+.++ +.+. .+.... ...+.|. ++++.|+....+. .|+.|.+.+.... .
T Consensus 151 ~l~v~Dl~tg----~~l~d~i~~~~-------~~~~~W~-~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~l 218 (414)
T PF02897_consen 151 TLRVFDLETG----KFLPDGIENPK-------FSSVSWS-DDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDEL 218 (414)
T ss_dssp EEEEEETTTT----EEEEEEEEEEE-------SEEEEEC-TTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EE
T ss_pred EEEEEECCCC----cCcCCcccccc-------cceEEEe-CCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCee
Confidence 8999999986 4332 222211 2249999 6766655444322 3778887665422 3
Q ss_pred eeeccccc--EEEEEec-CCCeEEEEeC-C---CcEEEEEcCCC----CCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558 80 QLIAHDKE--VYDIAWG-GVGVFASVSA-D---GSVRVFDLRDK----EHSTIIYESSEPDTPLVRLGWNKQDPRYMATI 148 (253)
Q Consensus 80 ~~~~~~~~--v~~~~~~-~~~~l~~~~~-d---g~i~i~d~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 148 (253)
.+...... ...+..+ ++++++.... . ..+.+.|+... .....+... ..+....+... .+.+++..
T Consensus 219 vfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~--~~~~~~~v~~~--~~~~yi~T 294 (414)
T PF02897_consen 219 VFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR--EDGVEYYVDHH--GDRLYILT 294 (414)
T ss_dssp EEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES--SSS-EEEEEEE--TTEEEEEE
T ss_pred EEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC--CCceEEEEEcc--CCEEEEee
Confidence 33333322 5567777 8887665433 2 34788888774 223333321 12233333333 34444433
Q ss_pred EeCC--CeEEEEECCCCCC--Ceeeeccccc--ceeEEEEecCCCCeEEEecCCC--cEEEEecc
Q 035558 149 IMDS--AKVVVLDIRFPTL--PVVELQRHQA--SVNAIAWAPHSSCHICTAGDDS--QALIWDLS 205 (253)
Q Consensus 149 ~~~~--~~i~~~d~~~~~~--~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~dg--~i~iwd~~ 205 (253)
..+. ..|...++..... ....+..+.. .+..+... +..+++.-..++ .|+++++.
T Consensus 295 n~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 295 NDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp -TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT
T ss_pred CCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECC
Confidence 3221 2366777776552 1224555555 45555444 434555555554 56777777
No 481
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=83.90 E-value=17 Score=27.86 Aligned_cols=156 Identities=12% Similarity=-0.042 Sum_probs=90.6
Q ss_pred eeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeee
Q 035558 45 LTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIY 123 (253)
Q Consensus 45 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 123 (253)
-..++-. +++..-+++...+.|--.|..+++....--+.......+..- ++...++-+.. -|.-.|-++.+......
T Consensus 64 p~dvapa-pdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 64 PFDVAPA-PDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred ccccccC-CCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 3455555 667667777777777777888887655444444555666666 66665554333 34444555544333222
Q ss_pred ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc-cccceeEEEEecCCCCeEEEecCCCcEEEE
Q 035558 124 ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR-HQASVNAIAWAPHSSCHICTAGDDSQALIW 202 (253)
Q Consensus 124 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~iw 202 (253)
.............|.+ .+++..++.. |- ---.|-. ...+..+.. .....+.|+..|+|+ .-++.-.+..|...
T Consensus 142 p~~~a~~nlet~vfD~-~G~lWFt~q~-G~-yGrLdPa--~~~i~vfpaPqG~gpyGi~atpdGs-vwyaslagnaiari 215 (353)
T COG4257 142 PLEHADANLETAVFDP-WGNLWFTGQI-GA-YGRLDPA--RNVISVFPAPQGGGPYGICATPDGS-VWYASLAGNAIARI 215 (353)
T ss_pred ccccCCCcccceeeCC-CccEEEeecc-cc-ceecCcc--cCceeeeccCCCCCCcceEECCCCc-EEEEeccccceEEc
Confidence 3334445778888998 8888877652 21 0001111 111333322 234567899999995 66666677778777
Q ss_pred eccCCC
Q 035558 203 DLSSMG 208 (253)
Q Consensus 203 d~~~~~ 208 (253)
|...+.
T Consensus 216 dp~~~~ 221 (353)
T COG4257 216 DPFAGH 221 (353)
T ss_pred ccccCC
Confidence 776653
No 482
>PLN02153 epithiospecifier protein
Probab=83.83 E-value=20 Score=28.48 Aligned_cols=63 Identities=11% Similarity=0.036 Sum_probs=32.6
Q ss_pred CCCEEEEEeCC-----------CeEEEEeccCceeee--eee---cccccEEEEEecCCCeEEEEeCC------------
Q 035558 54 EPRRIGTSSID-----------TTCTIWDIEREAVDT--QLI---AHDKEVYDIAWGGVGVFASVSAD------------ 105 (253)
Q Consensus 54 ~~~~l~~~~~d-----------g~i~vwd~~~~~~~~--~~~---~~~~~v~~~~~~~~~~l~~~~~d------------ 105 (253)
++.+++.|+.+ ..+.+||.++.+-.. ... ...... +++..++++++.++.+
T Consensus 137 ~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~-~~~~~~~~iyv~GG~~~~~~~gG~~~~~ 215 (341)
T PLN02153 137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGA-GFAVVQGKIWVVYGFATSILPGGKSDYE 215 (341)
T ss_pred CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcc-eEEEECCeEEEEeccccccccCCcccee
Confidence 45666777653 247788887664221 111 001111 1222256666655432
Q ss_pred -CcEEEEEcCCCC
Q 035558 106 -GSVRVFDLRDKE 117 (253)
Q Consensus 106 -g~i~i~d~~~~~ 117 (253)
..+.+||+.+.+
T Consensus 216 ~~~v~~yd~~~~~ 228 (341)
T PLN02153 216 SNAVQFFDPASGK 228 (341)
T ss_pred cCceEEEEcCCCc
Confidence 458889988775
No 483
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=83.48 E-value=24 Score=29.09 Aligned_cols=58 Identities=14% Similarity=0.112 Sum_probs=41.7
Q ss_pred CCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEc
Q 035558 55 PRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDL 113 (253)
Q Consensus 55 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~ 113 (253)
..+++.-+.||.+.+++-+.......+.. ---...+.|. ..+.|++++.+..+.-|..
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 47888899999999999876554443432 1122335677 7788999998888888866
No 484
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=83.32 E-value=3.3 Score=19.09 Aligned_cols=26 Identities=4% Similarity=0.067 Sum_probs=20.7
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEe
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWD 71 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 71 (253)
..|.+++.. ..+++.+...+.+|+|.
T Consensus 2 E~i~aia~g---~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAG---DSWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEcc---CCEEEEEeCCCeEEecC
Confidence 457888865 67899999889999873
No 485
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=82.22 E-value=23 Score=28.08 Aligned_cols=77 Identities=12% Similarity=0.065 Sum_probs=43.8
Q ss_pred eeeecccccceeEEEEec-------CCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558 167 VVELQRHQASVNAIAWAP-------HSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW 239 (253)
Q Consensus 167 ~~~~~~~~~~i~~~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 239 (253)
+..+..| ..+..+.|-+ .+ .+|++.-..+.|....+....... ...........++..+++.|+|..+
T Consensus 246 ~~~~~~~-~ap~G~~~y~g~~fp~~~g-~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~r~~~v~~~pDG~Ly 320 (331)
T PF07995_consen 246 VFAYPPH-SAPTGIIFYRGSAFPEYRG-DLFVADYGGGRIWRLDLDEDGSVT---EEEEFLGGFGGRPRDVAQGPDGALY 320 (331)
T ss_dssp SEEETTT---EEEEEEE-SSSSGGGTT-EEEEEETTTTEEEEEEEETTEEEE---EEEEECTTSSS-EEEEEEETTSEEE
T ss_pred ceeecCc-cccCceEEECCccCccccC-cEEEecCCCCEEEEEeeecCCCcc---ceEEccccCCCCceEEEEcCCCeEE
Confidence 3334434 4566677764 23 366666667788888876443221 1111233455689999999999877
Q ss_pred EEEEcCCcE
Q 035558 240 VAIAFSTKL 248 (253)
Q Consensus 240 ~~~~~~~~i 248 (253)
++...++.|
T Consensus 321 v~~d~~G~i 329 (331)
T PF07995_consen 321 VSDDSDGKI 329 (331)
T ss_dssp EEE-TTTTE
T ss_pred EEECCCCeE
Confidence 776666655
No 486
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=81.37 E-value=25 Score=27.85 Aligned_cols=162 Identities=14% Similarity=0.165 Sum_probs=0.0
Q ss_pred ccEEEEEec-CCCeEEEEeCCCc------EEEEEcCC------CCCeeeeeccCCCCCCee--------EEEeeCCCCCE
Q 035558 86 KEVYDIAWG-GVGVFASVSADGS------VRVFDLRD------KEHSTIIYESSEPDTPLV--------RLGWNKQDPRY 144 (253)
Q Consensus 86 ~~v~~~~~~-~~~~l~~~~~dg~------i~i~d~~~------~~~~~~~~~~~~~~~~i~--------~~~~~~~~~~~ 144 (253)
+.+..|.+. ++..+++.+.+|. +..+++.. .-............+... +|++.+ ++.+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CCCE
Q ss_pred EEEEEeC------CCeEEEEECCCCCCCeeeecc-------------cccceeEEEEecCCCCeEEEecCCC--------
Q 035558 145 MATIIMD------SAKVVVLDIRFPTLPVVELQR-------------HQASVNAIAWAPHSSCHICTAGDDS-------- 197 (253)
Q Consensus 145 l~~~~~~------~~~i~~~d~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~l~~~~~dg-------- 197 (253)
+++.-.+ .. |..++..........+.. .+...-+|+++|+| +.|+++.+..
T Consensus 99 ~is~E~~~~~~~~p~-I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG-~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 99 WISSEGGRTGGIPPR-IRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG-RTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEeCCccCCCCCCE-EEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCC-CEEEEEECccccCCCccc
Q ss_pred --------cEEEEeccCCCCCCCCCCCCeeecc------CCCceeEEEEcCCCCceE-----EEEcCCcEEEEEC
Q 035558 198 --------QALIWDLSSMGQPVEGGLDPILAYT------AGAEIEQLQWSSSQPDWV-----AIAFSTKLQILRV 253 (253)
Q Consensus 198 --------~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~-----~~~~~~~i~vw~l 253 (253)
.|..||..+...+. .+...... ....|..+.+-++++.++ ..+....++|+.+
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~---~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v 248 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPV---AEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRV 248 (326)
T ss_pred ccccCceEEEEEecCCCCCccc---eEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEE
No 487
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=81.12 E-value=32 Score=31.22 Aligned_cols=84 Identities=13% Similarity=0.121 Sum_probs=57.3
Q ss_pred CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEE-EEeCC---C-eEEEEECCCCCCCeeeecccccceeEE
Q 035558 106 GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT-IIMDS---A-KVVVLDIRFPTLPVVELQRHQASVNAI 180 (253)
Q Consensus 106 g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~~~---~-~i~~~d~~~~~~~~~~~~~~~~~i~~~ 180 (253)
+.|.+-|........+-. ....+|.+-+|+| +++.|+- .+.++ . .|++-|+++....+..+.-....|..-
T Consensus 329 ~~L~~~D~dG~n~~~ve~---~~~~~i~sP~~SP-DG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprw 404 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEI---EDTISVYHPDISP-DGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRW 404 (912)
T ss_pred CeEEEEecCCCCceEEEe---cCCCceecCcCCC-CCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccce
Confidence 578888887665332201 2234888899999 8888887 55555 2 388999988765456666667788888
Q ss_pred EEecCCCCeEEEe
Q 035558 181 AWAPHSSCHICTA 193 (253)
Q Consensus 181 ~~~~~~~~~l~~~ 193 (253)
...++|+..++-.
T Consensus 405 rv~e~gdt~ivyv 417 (912)
T TIGR02171 405 RVLENGDTVIVYV 417 (912)
T ss_pred EecCCCCeEEEEE
Confidence 8888887655433
No 488
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=80.97 E-value=47 Score=30.73 Aligned_cols=179 Identities=10% Similarity=0.015 Sum_probs=93.8
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCC-EEEEEe-----------CCCeEEEEecc-Cceeeee
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPR-RIGTSS-----------IDTTCTIWDIE-REAVDTQ 80 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~-----------~dg~i~vwd~~-~~~~~~~ 80 (253)
.|++.|...+ +.+..+.... ++-.-.+.++.|+..+.. ++++|. .+|.++.|++- .++.+.-
T Consensus 854 ~I~~~d~~s~----~~~~~~~l~~-ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lel 928 (1205)
T KOG1898|consen 854 SIRVFDPKSG----KIICLVELGQ-NEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLEL 928 (1205)
T ss_pred eEEEEcCCCC----ceEEEEeecC-CcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeee
Confidence 4777777764 3222222111 111245667777633333 333332 23446666543 2332221
Q ss_pred ee--cccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558 81 LI--AHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL 158 (253)
Q Consensus 81 ~~--~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~ 158 (253)
+. .-.++|.+++=..+ .+++ +....+++||+..++..+.... ......|..+.+ .+..+++|....+ +.++
T Consensus 929 lh~T~~~~~v~Ai~~f~~-~~La-gvG~~l~~YdlG~K~lLRk~e~-k~~p~~Is~iqt---~~~RI~VgD~qeS-V~~~ 1001 (1205)
T KOG1898|consen 929 LHKTEIPGPVGAICPFQG-RVLA-GVGRFLRLYDLGKKKLLRKCEL-KFIPNRISSIQT---YGARIVVGDIQES-VHFV 1001 (1205)
T ss_pred eeccCCCccceEEeccCC-EEEE-ecccEEEEeeCChHHHHhhhhh-ccCceEEEEEee---cceEEEEeeccce-EEEE
Confidence 21 12345555544334 3333 4456899999987763322211 122336777776 5677888877666 7766
Q ss_pred ECCCCCCCeeeeccc--ccceeEEEEecCCCCeEEEecCCCcEEEEeccC
Q 035558 159 DIRFPTLPVVELQRH--QASVNAIAWAPHSSCHICTAGDDSQALIWDLSS 206 (253)
Q Consensus 159 d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 206 (253)
-.+.....+..+... ...|+++.+-..+ .++.+..=|.+.+-.+..
T Consensus 1002 ~y~~~~n~l~~fadD~~pR~Vt~~~~lD~~--tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1002 RYRREDNQLIVFADDPVPRHVTALELLDYD--TVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred EEecCCCeEEEEeCCCccceeeEEEEecCC--ceeeccccCcEEEEECCC
Confidence 655544434444432 2346666665554 688887778887776654
No 489
>PLN02193 nitrile-specifier protein
Probab=80.48 E-value=33 Score=28.77 Aligned_cols=107 Identities=7% Similarity=-0.057 Sum_probs=53.5
Q ss_pred CCCEEEEEeCCC-----eEEEEeccCceeeeee-----ecccccEEEEEecCCCeEEEEeCC----CcEEEEEcCCCCCe
Q 035558 54 EPRRIGTSSIDT-----TCTIWDIEREAVDTQL-----IAHDKEVYDIAWGGVGVFASVSAD----GSVRVFDLRDKEHS 119 (253)
Q Consensus 54 ~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~ 119 (253)
++.+++.|+.++ .+..||+.+.+-...- ...... ..++..++.+++.++.+ ..+.+||+.+.+-.
T Consensus 278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~-~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~ 356 (470)
T PLN02193 278 EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG-AGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWT 356 (470)
T ss_pred CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCC-cEEEEECCcEEEEECCCCCccCceEEEECCCCEEE
Confidence 456667776543 4667887765422110 001111 11222266777777755 45889999877532
Q ss_pred eeeec--cCCCCCCeeEEEeeCCCCCEEEEEEeCC-------------CeEEEEECCCCC
Q 035558 120 TIIYE--SSEPDTPLVRLGWNKQDPRYMATIIMDS-------------AKVVVLDIRFPT 164 (253)
Q Consensus 120 ~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~~~-------------~~i~~~d~~~~~ 164 (253)
..... .+.......++.+ ++++++.|+... ..+.+||+.+..
T Consensus 357 ~~~~~g~~P~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 357 QVETFGVRPSERSVFASAAV---GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred EeccCCCCCCCcceeEEEEE---CCEEEEECCccCCccccccCccceeccEEEEEcCcCE
Confidence 22111 1111111222222 567777777531 127888887653
No 490
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=80.36 E-value=29 Score=28.05 Aligned_cols=52 Identities=4% Similarity=-0.084 Sum_probs=25.7
Q ss_pred CCCEEEEEeCCC-----------eEEEEeccCceeeeeeecccccE--EEEEe-cCCCeEEEEeCC
Q 035558 54 EPRRIGTSSIDT-----------TCTIWDIEREAVDTQLIAHDKEV--YDIAW-GGVGVFASVSAD 105 (253)
Q Consensus 54 ~~~~l~~~~~dg-----------~i~vwd~~~~~~~~~~~~~~~~v--~~~~~-~~~~~l~~~~~d 105 (253)
++.+++.|+.+. .+..||..+.+-...-....... .+... .++.+.+.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 466777776432 46778887654222111001111 12222 267777777754
No 491
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=79.99 E-value=11 Score=23.08 Aligned_cols=48 Identities=17% Similarity=0.113 Sum_probs=30.6
Q ss_pred EEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccC
Q 035558 155 VVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSS 206 (253)
Q Consensus 155 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 206 (253)
|..||..+ .+.....-...+.+.++|++..+.++....+.|++|..+.
T Consensus 38 Vvyyd~~~----~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 38 VVYYDGKE----VKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred EEEEeCCE----eEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 66777543 2222222345678999999843445555789999998754
No 492
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=79.92 E-value=54 Score=30.84 Aligned_cols=144 Identities=12% Similarity=0.041 Sum_probs=78.3
Q ss_pred CEEEEEe---------CCCeEEEEeccC-----ceeee-----ee--ecccccEEEEEecCCCeEEEEeCCCcEEEEEcC
Q 035558 56 RRIGTSS---------IDTTCTIWDIER-----EAVDT-----QL--IAHDKEVYDIAWGGVGVFASVSADGSVRVFDLR 114 (253)
Q Consensus 56 ~~l~~~~---------~dg~i~vwd~~~-----~~~~~-----~~--~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~ 114 (253)
.+|++|. .-|.+.++|+-. +++.. .+ +..+++|..++=-+|.++ ++ ..-+|.+|+++
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~-~~-~GqKI~v~~l~ 1124 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLL-SS-QGQKIIVRKLD 1124 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEeccEEE-Ec-cCcEEEEEEec
Confidence 4677664 247899998732 32211 11 234577776654455444 43 34569999994
Q ss_pred CCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc--cccceeEEEEecCCCC-eEE
Q 035558 115 DKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR--HQASVNAIAWAPHSSC-HIC 191 (253)
Q Consensus 115 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~-~l~ 191 (253)
.......+..... ++.-..... =.++|+.|.--.+ |.+.-.......+..+.. ..-.++++.|--+|.. .++
T Consensus 1125 r~~~ligVaFiD~---~~yv~s~~~-vknlIl~gDV~ks-isfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~fl 1199 (1366)
T KOG1896|consen 1125 RDSELIGVAFIDL---PLYVHSMKV-VKNLILAGDVMKS-ISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFL 1199 (1366)
T ss_pred cCCcceeeEEecc---ceeEEehhh-hhhheehhhhhhc-eEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEE
Confidence 4432222211111 233333222 3466776666666 766655432211222211 1235788888877754 577
Q ss_pred EecCCCcEEEEeccC
Q 035558 192 TAGDDSQALIWDLSS 206 (253)
Q Consensus 192 ~~~~dg~i~iwd~~~ 206 (253)
++..|+.|++|-...
T Consensus 1200 vsDa~rNi~vy~Y~P 1214 (1366)
T KOG1896|consen 1200 VSDADRNIHVYMYAP 1214 (1366)
T ss_pred EEcCCCcEEEEEeCC
Confidence 888999999986544
No 493
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=79.11 E-value=20 Score=27.27 Aligned_cols=69 Identities=12% Similarity=0.005 Sum_probs=45.8
Q ss_pred CCeeEEEecC------CCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec--C--CCeEEEEeCCCcEEEE
Q 035558 43 GPLTSFDWNE------AEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG--G--VGVFASVSADGSVRVF 111 (253)
Q Consensus 43 ~~v~~~~~~~------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~--~~~l~~~~~dg~i~i~ 111 (253)
..|+|++--+ ..-..|+.|+++|.|+|.|.+.......++-..-++.-.+.- + +-.++.++.||.|++.
T Consensus 177 t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 177 TVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred ceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 5677776431 123679999999999999999877777666443444222222 3 3357778889988764
No 494
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=78.28 E-value=57 Score=30.20 Aligned_cols=110 Identities=13% Similarity=0.118 Sum_probs=65.7
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee--cccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCee
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI--AHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST 120 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 120 (253)
++|.+++ +...++++| ....+++||+...++++... .-...|..+++. ...++.|...-.+.++-.+......
T Consensus 936 ~~v~Ai~---~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~-~~RI~VgD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen 936 GPVGAIC---PFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY-GARIVVGDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred ccceEEe---ccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeec-ceEEEEeeccceEEEEEEecCCCeE
Confidence 4555554 444455555 35689999998766554332 235567777774 5666777665567666665544333
Q ss_pred eeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558 121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160 (253)
Q Consensus 121 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~ 160 (253)
...........++.+.+- +...+|.+..-|. +.+..+
T Consensus 1011 ~~fadD~~pR~Vt~~~~l--D~~tvagaDrfGN-i~~vR~ 1047 (1205)
T KOG1898|consen 1011 IVFADDPVPRHVTALELL--DYDTVAGADRFGN-IAVVRI 1047 (1205)
T ss_pred EEEeCCCccceeeEEEEe--cCCceeeccccCc-EEEEEC
Confidence 333222223367777665 5667888877777 666644
No 495
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=78.18 E-value=7.5 Score=34.13 Aligned_cols=34 Identities=15% Similarity=0.199 Sum_probs=28.3
Q ss_pred ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558 174 QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 174 ~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
...++++.-+|.+ +-++.++.||+|++|+.....
T Consensus 14 ~e~~~aiqshp~~-~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGG-QSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred cceeeeeeecCCC-ceEEEEecCCcEEEEeecccc
Confidence 3457788888988 799999999999999986654
No 496
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=77.12 E-value=17 Score=32.40 Aligned_cols=139 Identities=11% Similarity=0.135 Sum_probs=79.2
Q ss_pred CCeEEEEeCCCcEEEEEcCCCCCeeeee-ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE--------EECCCCCCC
Q 035558 96 VGVFASVSADGSVRVFDLRDKEHSTIIY-ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV--------LDIRFPTLP 166 (253)
Q Consensus 96 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~--------~d~~~~~~~ 166 (253)
...+..|+.++.+.++.-..+....... ........+.++.+++ .-+..|.-||. +-. ||.. |
T Consensus 547 ~PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss---~Slgagl~dgt-~a~y~rap~gSwd~e----p 618 (925)
T KOG3522|consen 547 HPTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSS---GSLGAGLIDGT-LAVYGRAPSGSWDGE----P 618 (925)
T ss_pred CCcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccc---cccccCccCCc-cccccCCCCCCCCCC----C
Confidence 3457778888999888766332222222 2222223566666654 12232333333 222 4543 2
Q ss_pred eeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCC
Q 035558 167 VVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFST 246 (253)
Q Consensus 167 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 246 (253)
-..+.....++.+.++..+ ++.++.+|.|.++...+..... .......|...|+.+.....+ .+++-....
T Consensus 619 ~~~~~~g~lPvrsla~~ed----~~was~gG~V~vi~~tt~~~~~----~leahqee~~~Vthm~~~~~g-VwvafasG~ 689 (925)
T KOG3522|consen 619 NISIPTGSLPVRSLAFQED----FVWASEGGCVHVIPSTTFIRSW----DLEAHQEEAHSVTHMLYLDNG-VWVAFASGD 689 (925)
T ss_pred ccccccCCccccchhhhhc----eeeeecCCceEEEechhccccc----hhHHHHhhcceEEEEEeeCCc-eEEEEcCCC
Confidence 3333334567888887754 5556678999999988754322 112334567788888887665 566766666
Q ss_pred cEEEE
Q 035558 247 KLQIL 251 (253)
Q Consensus 247 ~i~vw 251 (253)
.++++
T Consensus 690 ~~rlf 694 (925)
T KOG3522|consen 690 EERLF 694 (925)
T ss_pred EEEEe
Confidence 66654
No 497
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=77.11 E-value=42 Score=28.04 Aligned_cols=55 Identities=15% Similarity=0.310 Sum_probs=35.4
Q ss_pred ccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeee--cc--CCCCCCeeEEEeeCC
Q 035558 86 KEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIY--ES--SEPDTPLVRLGWNKQ 140 (253)
Q Consensus 86 ~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~--~~~~~~i~~~~~~~~ 140 (253)
...+.|+|. ++++|++--..|.|++++-.+........ .. ...+.....|+++|+
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 456889999 88777766557999999865543211111 00 113567899999984
No 498
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=76.00 E-value=35 Score=26.51 Aligned_cols=173 Identities=16% Similarity=0.202 Sum_probs=89.6
Q ss_pred eEEEEeccCceeeeeeec------ccccEEEEEec--CC----Ce-EEEEeCCCcEEEEEcCCCCCeeeeeccCCC----
Q 035558 66 TCTIWDIEREAVDTQLIA------HDKEVYDIAWG--GV----GV-FASVSADGSVRVFDLRDKEHSTIIYESSEP---- 128 (253)
Q Consensus 66 ~i~vwd~~~~~~~~~~~~------~~~~v~~~~~~--~~----~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---- 128 (253)
.|.+||+.+.+.++.+.- ..+.+.++.+. ++ .+ .++=+..+-|.++|+.+++..+........
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 677788888876665541 24567788877 22 22 333344467999999988644433221111
Q ss_pred ------------CCCeeEEEeeCC--CCCEEEEEEeCCCeEEEEEC---CCCCC--------CeeeecccccceeEEEEe
Q 035558 129 ------------DTPLVRLGWNKQ--DPRYMATIIMDSAKVVVLDI---RFPTL--------PVVELQRHQASVNAIAWA 183 (253)
Q Consensus 129 ------------~~~i~~~~~~~~--~~~~l~~~~~~~~~i~~~d~---~~~~~--------~~~~~~~~~~~i~~~~~~ 183 (253)
...+..++.+|. +++.|.-....+..++-... ++... .++.+.........++.+
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 113555555541 33455555544422222221 11111 112221112356778999
Q ss_pred cCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC-CCceeEEEEcC--CCCceEE
Q 035558 184 PHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA-GAEIEQLQWSS--SQPDWVA 241 (253)
Q Consensus 184 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~--~~~~~~~ 241 (253)
++| .++++--..+.|..|+....-.+.. ......... -..+.++++.+ ++..++.
T Consensus 195 ~~G-~ly~~~~~~~aI~~w~~~~~~~~~~--~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~ 252 (287)
T PF03022_consen 195 PNG-NLYFTDVEQNAIGCWDPDGPYTPEN--FEILAQDPRTLQWPDGLKIDPEGDGYLWVL 252 (287)
T ss_dssp TTT-EEEEEECCCTEEEEEETTTSB-GCC--EEEEEE-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred CCC-cEEEecCCCCeEEEEeCCCCcCccc--hheeEEcCceeeccceeeeccccCceEEEE
Confidence 988 6888888999999999887432210 001111122 35678889988 7764443
No 499
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=75.54 E-value=6.6 Score=18.02 Aligned_cols=25 Identities=4% Similarity=0.116 Sum_probs=16.2
Q ss_pred eeEEEEecCCCCeEEEecCCCcEEEE
Q 035558 177 VNAIAWAPHSSCHICTAGDDSQALIW 202 (253)
Q Consensus 177 i~~~~~~~~~~~~l~~~~~dg~i~iw 202 (253)
..+++.+++| .++++-+...+|++|
T Consensus 4 P~gvav~~~g-~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDG-NIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTS-EEEEEECCCTEEEEE
T ss_pred CcEEEEeCCC-CEEEEECCCCEEEEC
Confidence 4567777777 466666666666654
No 500
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=75.42 E-value=49 Score=27.95 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=56.3
Q ss_pred CCCeEEEEeCCC------cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC-----eEEEEECCCC
Q 035558 95 GVGVFASVSADG------SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA-----KVVVLDIRFP 163 (253)
Q Consensus 95 ~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~-----~i~~~d~~~~ 163 (253)
+..+++.|+.+. .+..+|+.+.+..........+.......+..- +..+++.|+.+.. .++++|+.+.
T Consensus 122 ~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~-g~~l~vfGG~~~~~~~~ndl~i~d~~~~ 200 (482)
T KOG0379|consen 122 GDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVV-GTKLVVFGGIGGTGDSLNDLHIYDLETS 200 (482)
T ss_pred CCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEE-CCEEEEECCccCcccceeeeeeeccccc
Confidence 567778888885 788889888763322222211222222233332 4556666654332 2889998876
Q ss_pred CCCeeeeccc-cc--ceeEEEEecCCCCeEEEecCC------CcEEEEeccCCC
Q 035558 164 TLPVVELQRH-QA--SVNAIAWAPHSSCHICTAGDD------SQALIWDLSSMG 208 (253)
Q Consensus 164 ~~~~~~~~~~-~~--~i~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~ 208 (253)
.-......+. .. .-.+++...+ ++++.++.+ +-+.++|+.+..
T Consensus 201 ~W~~~~~~g~~P~pR~gH~~~~~~~--~~~v~gG~~~~~~~l~D~~~ldl~~~~ 252 (482)
T KOG0379|consen 201 TWSELDTQGEAPSPRYGHAMVVVGN--KLLVFGGGDDGDVYLNDVHILDLSTWE 252 (482)
T ss_pred cceecccCCCCCCCCCCceEEEECC--eEEEEeccccCCceecceEeeecccce
Confidence 5211111111 11 1122333333 467777666 345667776643
Done!