Query 035558
Match_columns 253
No_of_seqs 508 out of 1237
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 06:08:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035558.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035558hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gqb_B Methylosome protein 50; 100.0 5.6E-45 1.9E-49 285.0 32.0 233 4-253 93-329 (344)
2 2ynn_A Coatomer subunit beta'; 100.0 7.6E-43 2.6E-47 268.9 31.7 230 3-253 23-257 (304)
3 4g56_B MGC81050 protein; prote 100.0 4E-43 1.4E-47 276.1 29.6 233 4-253 105-341 (357)
4 3ow8_A WD repeat-containing pr 100.0 2.7E-42 9.3E-47 267.6 30.1 226 4-253 91-319 (321)
5 3ow8_A WD repeat-containing pr 100.0 3.9E-42 1.3E-46 266.8 29.6 229 3-253 46-277 (321)
6 1vyh_C Platelet-activating fac 100.0 5.7E-42 2E-46 274.3 30.5 228 3-253 160-409 (410)
7 1vyh_C Platelet-activating fac 100.0 1.2E-41 4.1E-46 272.5 30.2 227 4-253 119-367 (410)
8 2pm7_B Protein transport prote 100.0 2.3E-40 8E-45 254.2 31.2 238 3-253 19-283 (297)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.7E-40 9.2E-45 258.9 30.9 240 3-252 26-280 (345)
10 2xzm_R RACK1; ribosome, transl 100.0 5.6E-40 1.9E-44 257.0 32.2 232 2-253 36-283 (343)
11 1got_B GT-beta; complex (GTP-b 100.0 4.3E-40 1.5E-44 257.3 31.0 229 3-252 107-340 (340)
12 3bg1_A Protein SEC13 homolog; 100.0 5.2E-41 1.8E-45 260.0 24.8 240 3-253 23-291 (316)
13 4gqb_B Methylosome protein 50; 100.0 2.1E-40 7.1E-45 259.1 28.0 232 3-253 40-287 (344)
14 1got_B GT-beta; complex (GTP-b 100.0 1.3E-39 4.5E-44 254.6 31.0 229 3-253 65-299 (340)
15 2ynn_A Coatomer subunit beta'; 100.0 1.4E-39 4.7E-44 250.7 30.4 229 3-253 65-300 (304)
16 3frx_A Guanine nucleotide-bind 100.0 2.7E-39 9.2E-44 250.7 30.1 231 1-253 26-265 (319)
17 2pbi_B Guanine nucleotide-bind 100.0 8.3E-39 2.9E-43 251.3 31.8 230 3-252 116-354 (354)
18 1erj_A Transcriptional repress 100.0 5.9E-39 2E-43 255.6 30.2 239 3-253 74-339 (393)
19 1erj_A Transcriptional repress 100.0 8.6E-39 2.9E-43 254.6 30.7 230 3-253 133-387 (393)
20 2hes_X YDR267CP; beta-propelle 100.0 6.3E-39 2.2E-43 249.7 28.6 235 7-253 26-278 (330)
21 3iz6_a 40S ribosomal protein R 100.0 2.8E-39 9.7E-44 256.3 26.3 237 3-253 118-373 (380)
22 3iz6_a 40S ribosomal protein R 100.0 1.3E-39 4.4E-44 258.3 24.4 238 4-253 77-327 (380)
23 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.4E-38 2.2E-42 245.5 31.8 239 3-253 71-333 (345)
24 4ery_A WD repeat-containing pr 100.0 1.6E-37 5.3E-42 239.9 33.0 234 3-253 33-310 (312)
25 4g56_B MGC81050 protein; prote 100.0 1.2E-38 4.2E-43 250.6 27.2 233 3-253 52-299 (357)
26 2pbi_B Guanine nucleotide-bind 100.0 7.5E-38 2.6E-42 245.8 30.6 230 3-253 74-313 (354)
27 1nr0_A Actin interacting prote 100.0 3.3E-38 1.1E-42 264.4 29.7 232 3-253 28-268 (611)
28 3dm0_A Maltose-binding peripla 100.0 9.8E-38 3.4E-42 265.1 31.1 235 1-253 391-630 (694)
29 2xyi_A Probable histone-bindin 100.0 5.4E-38 1.8E-42 252.8 27.7 245 2-253 138-408 (430)
30 2hes_X YDR267CP; beta-propelle 100.0 9E-38 3.1E-42 243.2 28.1 236 4-253 69-326 (330)
31 3vl1_A 26S proteasome regulato 100.0 1.1E-37 3.9E-42 249.8 28.7 233 2-253 106-363 (420)
32 1nr0_A Actin interacting prote 100.0 1.7E-37 5.8E-42 260.1 30.4 232 2-253 157-520 (611)
33 3frx_A Guanine nucleotide-bind 100.0 2.7E-37 9.1E-42 239.4 27.9 210 25-253 5-225 (319)
34 3dwl_C Actin-related protein 2 100.0 2.6E-38 8.9E-43 250.2 22.3 234 3-252 21-278 (377)
35 3k26_A Polycomb protein EED; W 100.0 1.4E-37 4.9E-42 244.5 26.1 238 5-253 35-364 (366)
36 2ymu_A WD-40 repeat protein; u 100.0 3.7E-37 1.3E-41 256.2 29.4 221 3-252 354-577 (577)
37 2j04_B YDR362CP, TAU91; beta p 100.0 4.9E-38 1.7E-42 257.4 23.6 231 5-253 173-426 (524)
38 3jrp_A Fusion protein of prote 100.0 6.3E-37 2.2E-41 241.9 29.2 238 3-253 21-285 (379)
39 4ery_A WD repeat-containing pr 100.0 1.3E-36 4.6E-41 234.7 29.6 208 27-253 13-221 (312)
40 2xzm_R RACK1; ribosome, transl 100.0 1.9E-36 6.5E-41 236.9 30.8 232 3-253 86-338 (343)
41 4h5i_A Guanine nucleotide-exch 100.0 2.2E-37 7.6E-42 244.1 24.6 228 14-253 105-341 (365)
42 3f3f_A Nucleoporin SEH1; struc 100.0 1.5E-36 5.1E-41 236.7 29.1 244 4-253 22-335 (351)
43 2pm7_B Protein transport prote 100.0 9.3E-37 3.2E-41 234.1 26.8 213 30-253 2-236 (297)
44 1gxr_A ESG1, transducin-like e 100.0 6.7E-36 2.3E-40 232.5 31.9 225 4-253 108-335 (337)
45 4e54_B DNA damage-binding prot 100.0 3.3E-37 1.1E-41 248.6 25.0 239 1-253 128-428 (435)
46 1k8k_C P40, ARP2/3 complex 41 100.0 3.3E-36 1.1E-40 237.4 29.9 232 3-253 18-272 (372)
47 4e54_B DNA damage-binding prot 100.0 3.9E-37 1.3E-41 248.1 24.9 210 30-253 112-325 (435)
48 2pm9_A Protein WEB1, protein t 100.0 1.7E-36 5.7E-41 242.6 27.3 237 1-253 21-292 (416)
49 2aq5_A Coronin-1A; WD40 repeat 100.0 2.2E-36 7.5E-41 241.4 27.8 233 6-253 48-297 (402)
50 4ggc_A P55CDC, cell division c 100.0 2.3E-35 7.9E-40 227.9 32.3 225 6-253 37-313 (318)
51 4gga_A P55CDC, cell division c 100.0 1.4E-35 4.7E-40 238.1 32.1 234 5-253 116-393 (420)
52 2pm9_A Protein WEB1, protein t 100.0 1.1E-36 3.7E-41 243.7 25.3 237 3-253 77-335 (416)
53 2j04_B YDR362CP, TAU91; beta p 100.0 8.7E-37 3E-41 250.0 25.0 238 4-253 224-515 (524)
54 1gxr_A ESG1, transducin-like e 100.0 2.9E-35 9.8E-40 228.9 32.1 228 3-253 61-294 (337)
55 4aez_A CDC20, WD repeat-contai 100.0 1.7E-35 5.9E-40 236.2 30.4 226 4-253 103-334 (401)
56 4a11_B DNA excision repair pro 100.0 5.4E-35 1.8E-39 233.0 32.8 237 1-253 52-363 (408)
57 3zwl_B Eukaryotic translation 100.0 4.2E-35 1.4E-39 230.6 29.8 236 4-253 43-344 (369)
58 1sq9_A Antiviral protein SKI8; 100.0 9.9E-36 3.4E-40 236.8 26.2 232 6-253 82-393 (397)
59 3i2n_A WD repeat-containing pr 100.0 1E-35 3.4E-40 233.3 25.7 234 5-253 80-351 (357)
60 2ymu_A WD-40 repeat protein; u 100.0 4.5E-35 1.5E-39 243.7 30.3 222 3-253 313-537 (577)
61 3v7d_B Cell division control p 100.0 5E-35 1.7E-39 237.5 29.4 224 4-253 131-379 (464)
62 4aez_A CDC20, WD repeat-contai 100.0 8.5E-35 2.9E-39 232.2 30.2 226 4-253 145-378 (401)
63 4gq1_A NUP37; propeller, trans 100.0 5.4E-36 1.8E-40 238.5 23.1 237 2-253 98-387 (393)
64 4aow_A Guanine nucleotide-bind 100.0 2.4E-34 8.4E-39 224.1 31.9 233 1-253 47-284 (340)
65 3vl1_A 26S proteasome regulato 100.0 5.1E-35 1.7E-39 234.4 28.6 234 4-253 150-417 (420)
66 3i2n_A WD repeat-containing pr 100.0 3.5E-35 1.2E-39 230.2 26.4 236 1-253 27-289 (357)
67 3bg1_A Protein SEC13 homolog; 100.0 5.3E-36 1.8E-40 231.9 20.9 211 31-253 7-245 (316)
68 3jro_A Fusion protein of prote 100.0 3.6E-35 1.2E-39 251.2 27.4 237 4-253 20-283 (753)
69 1r5m_A SIR4-interacting protei 100.0 2.6E-34 8.8E-39 230.1 30.7 236 4-253 56-359 (425)
70 3ei3_B DNA damage-binding prot 100.0 4.9E-35 1.7E-39 232.0 26.3 230 2-253 128-380 (383)
71 3mkq_A Coatomer beta'-subunit; 100.0 9.3E-35 3.2E-39 250.6 29.5 230 3-253 23-257 (814)
72 3dw8_B Serine/threonine-protei 100.0 1E-34 3.5E-39 234.3 26.2 239 3-253 38-371 (447)
73 1k8k_C P40, ARP2/3 complex 41 100.0 4.3E-34 1.5E-38 225.3 29.2 237 4-253 63-359 (372)
74 3dm0_A Maltose-binding peripla 100.0 2.2E-34 7.7E-39 244.5 29.2 232 3-253 440-691 (694)
75 3dwl_C Actin-related protein 2 100.0 9.5E-35 3.2E-39 229.8 24.9 238 4-253 66-377 (377)
76 1sq9_A Antiviral protein SKI8; 100.0 9.5E-35 3.3E-39 231.2 24.8 230 6-253 27-320 (397)
77 4aow_A Guanine nucleotide-bind 100.0 2.6E-34 8.9E-39 223.9 26.6 221 14-253 17-244 (340)
78 1r5m_A SIR4-interacting protei 100.0 3.2E-34 1.1E-38 229.5 27.8 231 4-253 119-423 (425)
79 3mmy_A MRNA export factor; mRN 100.0 2E-34 7E-39 226.5 25.5 227 5-250 54-341 (368)
80 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6.2E-34 2.1E-38 230.4 28.6 205 43-253 103-337 (450)
81 3jrp_A Fusion protein of prote 100.0 2.6E-34 9E-39 226.9 25.6 213 28-253 2-238 (379)
82 3lrv_A PRE-mRNA-splicing facto 100.0 2.6E-34 8.8E-39 224.8 25.0 225 4-253 47-290 (343)
83 1p22_A F-BOX/WD-repeat protein 100.0 1.2E-33 4.2E-38 227.8 29.5 220 4-253 142-363 (435)
84 2aq5_A Coronin-1A; WD40 repeat 100.0 1.7E-34 5.8E-39 230.5 24.2 236 1-253 90-340 (402)
85 3ei3_B DNA damage-binding prot 100.0 1.2E-33 4.1E-38 224.1 28.9 211 28-253 64-280 (383)
86 3odt_A Protein DOA1; ubiquitin 100.0 1.8E-33 6E-38 216.7 28.1 220 4-253 28-253 (313)
87 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-33 3.8E-38 253.8 29.9 228 3-253 625-911 (1249)
88 3odt_A Protein DOA1; ubiquitin 100.0 9E-33 3.1E-37 212.8 30.2 221 4-253 70-294 (313)
89 1yfq_A Cell cycle arrest prote 100.0 3.3E-33 1.1E-37 218.0 26.9 227 4-253 22-280 (342)
90 1pgu_A Actin interacting prote 100.0 3.9E-33 1.3E-37 233.3 29.2 228 3-253 28-281 (615)
91 3zwl_B Eukaryotic translation 100.0 6.7E-33 2.3E-37 217.9 28.3 207 28-253 23-247 (369)
92 3gre_A Serine/threonine-protei 100.0 3.8E-34 1.3E-38 230.7 21.4 239 2-253 73-357 (437)
93 4a11_B DNA excision repair pro 100.0 3.5E-33 1.2E-37 222.5 25.6 225 14-253 24-274 (408)
94 1pgu_A Actin interacting prote 100.0 1.8E-32 6.3E-37 229.3 30.9 231 2-253 170-612 (615)
95 2xyi_A Probable histone-bindin 100.0 2.7E-33 9.4E-38 225.4 24.5 209 33-253 124-351 (430)
96 2w18_A PALB2, fancn, partner a 100.0 5.2E-33 1.8E-37 211.8 24.3 232 7-253 56-355 (356)
97 1p22_A F-BOX/WD-repeat protein 100.0 5.5E-33 1.9E-37 223.9 25.4 224 4-253 182-412 (435)
98 3dw8_B Serine/threonine-protei 100.0 1.6E-32 5.3E-37 221.6 27.4 208 33-252 173-443 (447)
99 3v7d_B Cell division control p 100.0 3.5E-32 1.2E-36 220.8 29.1 219 7-253 175-419 (464)
100 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.1E-31 3.9E-36 216.8 29.4 217 4-253 128-346 (445)
101 3gre_A Serine/threonine-protei 100.0 7.2E-33 2.5E-37 223.2 21.3 241 4-252 122-437 (437)
102 3f3f_A Nucleoporin SEH1; struc 100.0 7.6E-32 2.6E-36 210.1 26.3 209 30-253 4-247 (351)
103 3sfz_A APAF-1, apoptotic pepti 100.0 9.1E-32 3.1E-36 241.4 29.0 238 3-253 667-1032(1249)
104 3mkq_A Coatomer beta'-subunit; 100.0 4.8E-32 1.6E-36 233.8 25.9 208 28-253 4-215 (814)
105 3jro_A Fusion protein of prote 100.0 2.6E-32 8.7E-37 233.6 23.7 211 30-253 2-236 (753)
106 2ovr_B FBW7, F-BOX/WD repeat p 100.0 9.9E-31 3.4E-35 211.3 30.8 216 5-253 169-389 (445)
107 1yfq_A Cell cycle arrest prote 100.0 1.8E-31 6.1E-36 208.2 24.6 217 4-247 67-315 (342)
108 2oaj_A Protein SNI1; WD40 repe 100.0 2.2E-31 7.6E-36 231.1 27.5 233 3-252 27-309 (902)
109 2j04_A TAU60, YPL007P, hypothe 100.0 1.6E-31 5.5E-36 215.8 24.5 191 43-253 86-295 (588)
110 3vu4_A KMHSV2; beta-propeller 100.0 8.9E-31 3.1E-35 205.7 28.0 218 3-253 29-269 (355)
111 3mmy_A MRNA export factor; mRN 100.0 7.8E-31 2.7E-35 206.1 25.6 210 27-253 29-302 (368)
112 4h5i_A Guanine nucleotide-exch 100.0 3.6E-31 1.2E-35 208.6 23.6 190 3-208 143-345 (365)
113 3lrv_A PRE-mRNA-splicing facto 100.0 3E-30 1E-34 201.8 27.8 221 8-251 88-329 (343)
114 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.6E-30 9E-35 209.2 28.2 226 4-252 113-388 (450)
115 2oaj_A Protein SNI1; WD40 repe 100.0 5.8E-31 2E-35 228.5 25.1 206 34-253 14-240 (902)
116 3k26_A Polycomb protein EED; W 100.0 9.8E-31 3.4E-35 205.5 22.1 209 32-253 13-258 (366)
117 3vu4_A KMHSV2; beta-propeller 100.0 9.3E-29 3.2E-33 194.2 27.7 228 5-253 71-334 (355)
118 4gq1_A NUP37; propeller, trans 100.0 2.6E-30 8.9E-35 205.7 18.8 241 2-253 28-346 (393)
119 2w18_A PALB2, fancn, partner a 100.0 2E-29 6.9E-34 192.1 21.5 186 4-204 144-355 (356)
120 3bws_A Protein LP49; two-domai 100.0 1.3E-28 4.6E-33 197.9 26.9 226 1-253 131-388 (433)
121 1l0q_A Surface layer protein; 100.0 9E-28 3.1E-32 190.7 28.5 220 6-253 3-231 (391)
122 4gga_A P55CDC, cell division c 100.0 1.6E-27 5.6E-32 191.2 28.2 196 44-253 107-308 (420)
123 2j04_A TAU60, YPL007P, hypothe 100.0 6.9E-28 2.3E-32 194.7 25.0 223 3-243 95-349 (588)
124 1l0q_A Surface layer protein; 100.0 6.8E-27 2.3E-31 185.6 30.4 223 2-253 41-273 (391)
125 3bws_A Protein LP49; two-domai 100.0 2.2E-27 7.7E-32 190.8 27.8 223 3-253 179-430 (433)
126 4ggc_A P55CDC, cell division c 100.0 6E-27 2E-31 180.6 26.1 196 44-253 27-228 (318)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 2.7E-25 9.3E-30 177.9 29.9 211 14-253 160-385 (415)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.5E-24 8.4E-29 172.4 25.3 225 3-253 73-342 (415)
129 2ojh_A Uncharacterized protein 99.9 6.6E-24 2.3E-28 161.6 24.6 214 14-253 23-256 (297)
130 2oit_A Nucleoporin 214KDA; NH2 99.9 3.7E-25 1.3E-29 177.9 16.4 205 43-253 37-276 (434)
131 2ojh_A Uncharacterized protein 99.9 8.6E-24 2.9E-28 160.9 22.2 223 3-246 51-293 (297)
132 3u4y_A Uncharacterized protein 99.9 1.1E-22 3.9E-27 157.8 27.2 230 3-253 8-250 (331)
133 1ri6_A Putative isomerase YBHE 99.9 1.2E-22 4E-27 158.1 27.1 234 4-252 48-305 (343)
134 2oit_A Nucleoporin 214KDA; NH2 99.9 1.7E-23 5.9E-28 168.2 20.2 157 43-208 93-280 (434)
135 1ri6_A Putative isomerase YBHE 99.9 2.4E-22 8.2E-27 156.3 25.4 239 3-253 3-260 (343)
136 3hfq_A Uncharacterized protein 99.9 5.4E-22 1.8E-26 155.1 27.2 235 4-252 50-314 (347)
137 3u4y_A Uncharacterized protein 99.9 4.1E-22 1.4E-26 154.6 25.4 238 2-253 49-302 (331)
138 1nir_A Nitrite reductase; hemo 99.9 3E-22 1E-26 165.2 25.8 232 4-253 148-400 (543)
139 1nir_A Nitrite reductase; hemo 99.9 4.5E-22 1.6E-26 164.1 26.5 234 4-253 189-456 (543)
140 3vgz_A Uncharacterized protein 99.9 3.3E-21 1.1E-25 150.6 28.4 227 2-245 98-334 (353)
141 2ecf_A Dipeptidyl peptidase IV 99.9 2.4E-22 8.2E-27 171.9 21.9 229 3-252 46-364 (741)
142 3vgz_A Uncharacterized protein 99.9 4.3E-21 1.5E-25 150.0 26.3 214 14-253 70-301 (353)
143 1jmx_B Amine dehydrogenase; ox 99.9 1.4E-21 4.7E-26 152.5 23.4 224 3-253 9-323 (349)
144 1xfd_A DIP, dipeptidyl aminope 99.9 4.6E-22 1.6E-26 169.6 21.7 227 3-246 26-329 (723)
145 1pby_B Quinohemoprotein amine 99.9 1.6E-21 5.4E-26 151.4 22.6 228 2-253 43-308 (337)
146 2ecf_A Dipeptidyl peptidase IV 99.9 1.4E-21 4.9E-26 167.1 23.6 228 3-253 118-411 (741)
147 2z3z_A Dipeptidyl aminopeptida 99.9 1E-20 3.4E-25 161.1 27.5 236 3-253 130-433 (706)
148 2z3z_A Dipeptidyl aminopeptida 99.9 1.9E-21 6.4E-26 165.6 22.0 223 1-246 90-377 (706)
149 1k32_A Tricorn protease; prote 99.9 3.8E-21 1.3E-25 170.1 22.5 227 3-252 254-499 (1045)
150 3o4h_A Acylamino-acid-releasin 99.9 1.2E-20 4.1E-25 157.3 20.8 218 3-253 31-274 (582)
151 3hfq_A Uncharacterized protein 99.9 1.3E-19 4.5E-24 141.5 24.6 227 14-253 17-269 (347)
152 3scy_A Hypothetical bacterial 99.9 8.8E-19 3E-23 137.6 29.3 225 14-252 76-334 (361)
153 3scy_A Hypothetical bacterial 99.9 1.2E-18 4E-23 136.9 28.2 227 14-253 28-289 (361)
154 1xfd_A DIP, dipeptidyl aminope 99.9 8.8E-20 3E-24 155.6 23.5 232 3-253 70-391 (723)
155 1z68_A Fibroblast activation p 99.9 1E-20 3.5E-25 161.4 16.8 227 4-251 26-340 (719)
156 1pby_B Quinohemoprotein amine 99.9 9.8E-20 3.4E-24 141.2 21.0 220 6-253 2-267 (337)
157 1jof_A Carboxy-CIS,CIS-muconat 99.9 3.5E-19 1.2E-23 140.2 23.4 235 3-253 49-339 (365)
158 4a5s_A Dipeptidyl peptidase 4 99.9 5.7E-19 1.9E-23 151.1 26.0 235 3-252 26-350 (740)
159 1k32_A Tricorn protease; prote 99.9 2.7E-19 9.2E-24 158.3 24.1 220 4-253 347-635 (1045)
160 1q7f_A NHL, brain tumor CG1071 99.8 2.9E-17 1E-21 124.8 26.3 230 4-253 40-278 (286)
161 3o4h_A Acylamino-acid-releasin 99.8 3.3E-18 1.1E-22 142.6 20.8 189 43-253 22-225 (582)
162 1jof_A Carboxy-CIS,CIS-muconat 99.8 3.7E-17 1.3E-21 128.6 23.2 231 14-253 15-289 (365)
163 1z68_A Fibroblast activation p 99.8 1.3E-18 4.3E-23 148.5 14.5 196 46-252 19-284 (719)
164 3pe7_A Oligogalacturonate lyas 99.8 2.2E-16 7.5E-21 124.9 23.7 228 4-253 46-327 (388)
165 3fvz_A Peptidyl-glycine alpha- 99.8 3.4E-16 1.2E-20 121.4 24.0 216 15-253 71-320 (329)
166 1jmx_B Amine dehydrogenase; ox 99.8 6.7E-17 2.3E-21 125.9 19.1 154 47-208 4-177 (349)
167 1rwi_B Serine/threonine-protei 99.8 1.3E-15 4.3E-20 114.7 25.3 225 4-253 34-262 (270)
168 4a5s_A Dipeptidyl peptidase 4 99.8 6.1E-17 2.1E-21 138.6 18.5 199 43-252 17-291 (740)
169 2dg1_A DRP35, lactonase; beta 99.7 2.2E-15 7.7E-20 116.8 24.7 221 14-252 28-260 (333)
170 3pe7_A Oligogalacturonate lyas 99.7 1.1E-15 3.9E-20 120.8 22.6 215 18-253 15-271 (388)
171 3azo_A Aminopeptidase; POP fam 99.7 5.5E-16 1.9E-20 131.0 20.9 194 43-251 130-363 (662)
172 2oiz_A Aromatic amine dehydrog 99.7 9.4E-16 3.2E-20 120.4 20.6 212 14-253 32-332 (361)
173 3azo_A Aminopeptidase; POP fam 99.7 8.4E-16 2.9E-20 129.9 20.4 215 14-252 48-320 (662)
174 3c5m_A Oligogalacturonate lyas 99.7 1.5E-15 5.1E-20 120.3 19.8 223 4-253 46-327 (396)
175 2dg1_A DRP35, lactonase; beta 99.7 6.3E-14 2.2E-18 108.6 28.1 216 4-245 55-300 (333)
176 3e5z_A Putative gluconolactona 99.7 1.3E-14 4.5E-19 110.7 22.7 214 2-246 37-278 (296)
177 3dsm_A Uncharacterized protein 99.7 2.1E-14 7.2E-19 111.3 23.9 223 4-253 53-300 (328)
178 3fvz_A Peptidyl-glycine alpha- 99.7 1.6E-14 5.3E-19 112.1 22.6 201 43-252 24-274 (329)
179 1q7f_A NHL, brain tumor CG1071 99.7 1.3E-14 4.4E-19 110.2 21.5 192 43-252 30-235 (286)
180 2xdw_A Prolyl endopeptidase; a 99.7 3.6E-14 1.2E-18 120.9 26.1 200 43-251 125-362 (710)
181 2gop_A Trilobed protease; beta 99.7 2.7E-14 9.1E-19 111.3 22.7 197 14-251 44-288 (347)
182 2oiz_A Aromatic amine dehydrog 99.7 8.9E-14 3E-18 109.2 25.5 204 14-237 82-360 (361)
183 3e5z_A Putative gluconolactona 99.7 3.2E-14 1.1E-18 108.6 21.5 195 43-252 28-243 (296)
184 3no2_A Uncharacterized protein 99.7 8.3E-14 2.8E-18 105.2 23.2 212 5-242 5-230 (276)
185 2gop_A Trilobed protease; beta 99.7 3.3E-14 1.1E-18 110.8 21.7 210 3-252 68-328 (347)
186 2z2n_A Virginiamycin B lyase; 99.7 7.7E-13 2.6E-17 100.6 28.5 223 4-252 25-252 (299)
187 3c5m_A Oligogalacturonate lyas 99.7 1.1E-14 3.9E-19 115.2 18.3 222 4-252 91-379 (396)
188 2xdw_A Prolyl endopeptidase; a 99.6 2.4E-13 8.4E-18 115.9 26.9 227 3-253 134-412 (710)
189 1xip_A Nucleoporin NUP159; bet 99.6 1.9E-14 6.6E-19 112.7 16.2 179 43-241 38-230 (388)
190 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.2E-12 4.1E-17 100.4 26.0 224 3-253 27-297 (314)
191 1qks_A Cytochrome CD1 nitrite 99.6 1.1E-12 3.7E-17 108.4 26.3 229 6-252 168-418 (567)
192 2bkl_A Prolyl endopeptidase; m 99.6 1.9E-13 6.4E-18 116.3 22.0 226 3-253 130-395 (695)
193 3hrp_A Uncharacterized protein 99.6 2.7E-12 9.1E-17 102.3 27.3 225 3-253 140-408 (409)
194 2bkl_A Prolyl endopeptidase; m 99.6 3.2E-13 1.1E-17 114.9 22.9 197 43-252 121-346 (695)
195 3g4e_A Regucalcin; six bladed 99.6 3.4E-12 1.2E-16 97.4 25.5 216 2-243 22-260 (297)
196 2z2n_A Virginiamycin B lyase; 99.6 8.4E-12 2.9E-16 94.9 27.6 222 4-252 67-292 (299)
197 3dsm_A Uncharacterized protein 99.6 1.4E-12 4.7E-17 101.1 22.9 218 14-253 18-251 (328)
198 1qks_A Cytochrome CD1 nitrite 99.6 1.6E-12 5.5E-17 107.4 24.4 187 54-253 166-371 (567)
199 1rwi_B Serine/threonine-protei 99.6 6.3E-13 2.1E-17 99.8 20.3 193 44-252 25-219 (270)
200 2qc5_A Streptogramin B lactona 99.6 1.9E-11 6.6E-16 92.9 28.1 223 4-252 30-257 (300)
201 1xip_A Nucleoporin NUP159; bet 99.6 1.6E-13 5.6E-18 107.5 16.0 164 5-192 49-230 (388)
202 3no2_A Uncharacterized protein 99.5 1.3E-12 4.5E-17 98.6 19.0 180 54-252 4-192 (276)
203 2mad_H Methylamine dehydrogena 99.5 9.5E-11 3.2E-15 92.2 27.7 211 14-253 48-348 (373)
204 1yr2_A Prolyl oligopeptidase; 99.5 7.7E-12 2.6E-16 107.1 22.7 197 43-252 163-390 (741)
205 2qc5_A Streptogramin B lactona 99.5 1.1E-10 3.9E-15 88.6 26.6 221 4-252 72-297 (300)
206 1yr2_A Prolyl oligopeptidase; 99.5 9.6E-12 3.3E-16 106.6 21.6 225 3-253 172-439 (741)
207 2ghs_A AGR_C_1268P; regucalcin 99.5 2E-10 6.9E-15 88.8 26.9 213 2-244 58-291 (326)
208 3g4e_A Regucalcin; six bladed 99.5 2.1E-10 7.1E-15 87.5 25.4 200 44-252 14-226 (297)
209 3hrp_A Uncharacterized protein 99.5 5.2E-11 1.8E-15 94.9 22.9 194 43-252 131-351 (409)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.2E-10 4.2E-15 89.2 22.6 200 43-252 18-253 (314)
211 3iuj_A Prolyl endopeptidase; h 99.4 2.5E-11 8.6E-16 103.2 20.5 199 43-252 129-356 (693)
212 2ece_A 462AA long hypothetical 99.4 2.7E-10 9.2E-15 90.0 21.4 231 4-243 94-399 (462)
213 2qe8_A Uncharacterized protein 99.4 2.6E-10 9E-15 88.8 21.4 228 4-245 27-311 (343)
214 3dr2_A Exported gluconolactona 99.4 3.9E-10 1.3E-14 86.3 21.3 214 2-246 54-298 (305)
215 3c75_H MADH, methylamine dehyd 99.4 2.5E-10 8.6E-15 90.7 20.4 217 14-253 100-400 (426)
216 2ghs_A AGR_C_1268P; regucalcin 99.4 2E-09 6.7E-14 83.2 25.0 194 45-252 51-257 (326)
217 3iuj_A Prolyl endopeptidase; h 99.3 4.7E-10 1.6E-14 95.4 21.7 222 3-252 138-402 (693)
218 3sjl_D Methylamine dehydrogena 99.3 2.4E-09 8.2E-14 83.8 23.8 221 14-253 110-361 (386)
219 3dr2_A Exported gluconolactona 99.3 9.2E-10 3.1E-14 84.2 18.1 193 43-252 45-264 (305)
220 2qe8_A Uncharacterized protein 99.2 2.4E-09 8.4E-14 83.3 19.8 205 44-253 18-276 (343)
221 2hz6_A Endoplasmic reticulum t 99.2 5.7E-12 2E-16 99.1 4.7 181 5-209 9-195 (369)
222 2hz6_A Endoplasmic reticulum t 99.2 5.4E-12 1.9E-16 99.3 3.5 177 54-252 8-189 (369)
223 1npe_A Nidogen, entactin; glyc 99.2 1.4E-07 4.7E-12 70.6 27.0 225 7-252 3-235 (267)
224 1mda_H Methylamine dehydrogena 99.2 1.7E-09 6E-14 84.5 16.1 213 14-253 47-344 (368)
225 3sjl_D Methylamine dehydrogena 99.2 1.6E-08 5.6E-13 79.1 20.7 190 53-253 42-254 (386)
226 2mad_H Methylamine dehydrogena 99.1 3.4E-08 1.2E-12 77.6 22.7 146 53-208 30-197 (373)
227 2iwa_A Glutamine cyclotransfer 99.1 7.5E-08 2.6E-12 71.5 22.6 192 45-252 23-234 (266)
228 1npe_A Nidogen, entactin; glyc 99.1 2.5E-07 8.5E-12 69.2 25.5 212 2-236 45-262 (267)
229 3hxj_A Pyrrolo-quinoline quino 99.1 1.4E-08 4.9E-13 78.2 19.1 212 5-252 108-321 (330)
230 1kb0_A Quinohemoprotein alcoho 99.1 2.9E-08 9.9E-13 84.1 22.1 184 47-242 247-537 (677)
231 3v65_B Low-density lipoprotein 99.1 5.4E-07 1.8E-11 71.2 27.6 222 7-251 89-314 (386)
232 3v64_C Agrin; beta propeller, 99.1 1.2E-06 4.1E-11 68.2 29.2 222 7-251 47-271 (349)
233 2ece_A 462AA long hypothetical 99.1 6.1E-09 2.1E-13 82.4 15.7 194 56-253 97-350 (462)
234 1yiq_A Quinohemoprotein alcoho 99.1 4.3E-08 1.5E-12 83.2 22.0 184 47-242 239-535 (689)
235 3c75_H MADH, methylamine dehyd 99.1 3.1E-08 1.1E-12 78.7 19.2 193 50-252 79-292 (426)
236 2iwa_A Glutamine cyclotransfer 99.0 1.3E-07 4.4E-12 70.2 20.5 189 5-208 32-239 (266)
237 1fwx_A Nitrous oxide reductase 99.0 4.5E-08 1.5E-12 80.1 18.8 222 4-244 100-407 (595)
238 3hxj_A Pyrrolo-quinoline quino 99.0 3.3E-08 1.1E-12 76.1 16.6 175 55-252 107-281 (330)
239 1ijq_A LDL receptor, low-densi 99.0 4.2E-06 1.4E-10 64.2 28.6 223 7-252 4-235 (316)
240 3q7m_A Lipoprotein YFGL, BAMB; 99.0 2.4E-07 8.2E-12 72.8 20.7 219 5-252 144-375 (376)
241 3nol_A Glutamine cyclotransfer 99.0 4.3E-07 1.5E-11 66.8 20.0 200 28-245 32-245 (262)
242 1kb0_A Quinohemoprotein alcoho 99.0 1E-07 3.5E-12 80.8 19.2 230 4-253 128-505 (677)
243 3nok_A Glutaminyl cyclase; bet 99.0 8.2E-07 2.8E-11 65.4 21.4 185 45-244 57-254 (268)
244 1mda_H Methylamine dehydrogena 98.9 1.7E-07 5.8E-12 73.3 18.6 71 135-209 269-349 (368)
245 3nok_A Glutaminyl cyclase; bet 98.9 2.4E-07 8.2E-12 68.2 17.1 172 4-194 64-254 (268)
246 3mbr_X Glutamine cyclotransfer 98.9 2.2E-06 7.5E-11 62.5 21.8 200 28-244 10-223 (243)
247 3q7m_A Lipoprotein YFGL, BAMB; 98.9 1.7E-06 5.8E-11 67.9 22.9 222 4-252 53-293 (376)
248 3qqz_A Putative uncharacterize 98.9 6.6E-06 2.3E-10 60.7 27.1 201 43-252 27-250 (255)
249 1yiq_A Quinohemoprotein alcoho 98.9 3.1E-07 1.1E-11 78.0 19.2 229 5-253 122-503 (689)
250 3p5b_L Low density lipoprotein 98.9 1.4E-05 4.8E-10 63.4 28.9 186 7-208 85-279 (400)
251 2p4o_A Hypothetical protein; p 98.9 1.2E-05 4.1E-10 61.3 26.6 218 4-244 42-277 (306)
252 3mbr_X Glutamine cyclotransfer 98.8 1E-06 3.6E-11 64.2 18.7 172 5-194 31-223 (243)
253 3nol_A Glutamine cyclotransfer 98.8 3.5E-07 1.2E-11 67.3 15.6 173 4-194 52-244 (262)
254 3sov_A LRP-6, low-density lipo 98.8 1.8E-05 6.3E-10 60.7 25.1 226 5-251 5-234 (318)
255 3v65_B Low-density lipoprotein 98.7 2.4E-05 8.4E-10 61.7 25.1 190 3-208 126-320 (386)
256 2fp8_A Strictosidine synthase; 98.7 4.2E-06 1.4E-10 64.3 19.7 189 45-244 21-248 (322)
257 2p4o_A Hypothetical protein; p 98.7 1.9E-05 6.7E-10 60.1 22.9 195 44-252 33-239 (306)
258 3v64_C Agrin; beta propeller, 98.7 5.1E-05 1.8E-09 59.0 26.6 158 44-208 117-277 (349)
259 1fwx_A Nitrous oxide reductase 98.7 6.6E-06 2.3E-10 67.5 19.6 193 54-253 100-359 (595)
260 2fp8_A Strictosidine synthase; 98.6 4.5E-05 1.5E-09 58.5 23.3 192 43-253 80-311 (322)
261 3m0c_C LDL receptor, low-densi 98.6 0.00018 6E-09 61.9 28.0 186 8-208 398-591 (791)
262 4a2l_A BT_4663, two-component 98.6 0.00024 8.2E-09 61.5 30.0 196 43-252 310-523 (795)
263 4hw6_A Hypothetical protein, I 98.6 9E-05 3.1E-09 59.4 24.1 233 4-252 152-430 (433)
264 1n7d_A LDL receptor, low-densi 98.5 1.7E-06 5.9E-11 73.5 13.7 179 14-207 387-572 (699)
265 3tc9_A Hypothetical hydrolase; 98.5 7.1E-05 2.4E-09 59.9 22.4 231 4-252 149-427 (430)
266 3qqz_A Putative uncharacterize 98.5 8.4E-05 2.9E-09 54.8 21.0 190 2-204 36-251 (255)
267 4a0p_A LRP6, LRP-6, low-densit 98.5 0.0003 1E-08 59.1 28.6 223 4-251 6-233 (628)
268 1kv9_A Type II quinohemoprotei 98.5 1.2E-05 4E-10 68.2 18.1 158 47-210 234-492 (668)
269 2xe4_A Oligopeptidase B; hydro 98.5 8.8E-05 3E-09 63.8 23.6 193 44-251 175-394 (751)
270 4a2l_A BT_4663, two-component 98.5 0.00043 1.5E-08 59.9 30.4 229 5-252 226-477 (795)
271 2ad6_A Methanol dehydrogenase 98.5 8.9E-05 3E-09 61.6 22.6 139 66-210 273-498 (571)
272 1kv9_A Type II quinohemoprotei 98.5 2.9E-05 1E-09 65.8 19.5 150 5-165 118-336 (668)
273 3kya_A Putative phosphatase; s 98.4 0.00038 1.3E-08 56.3 24.0 237 4-252 151-472 (496)
274 1flg_A Protein (quinoprotein e 98.4 0.00038 1.3E-08 58.0 24.7 166 65-242 291-546 (582)
275 1k3i_A Galactose oxidase precu 98.4 3.8E-05 1.3E-09 65.0 18.9 225 4-245 197-476 (656)
276 1k3i_A Galactose oxidase precu 98.4 1.5E-05 5E-10 67.5 16.0 226 3-244 252-530 (656)
277 3s94_A LRP-6, low-density lipo 98.4 0.00046 1.6E-08 57.9 24.7 188 7-207 11-203 (619)
278 1w6s_A Methanol dehydrogenase 98.4 0.00018 6.3E-09 59.9 21.8 181 48-241 246-532 (599)
279 3v9f_A Two-component system se 98.3 0.00075 2.6E-08 58.3 25.7 195 43-251 313-520 (781)
280 3tc9_A Hypothetical hydrolase; 98.3 0.00019 6.3E-09 57.5 20.3 156 44-206 138-301 (430)
281 2ad6_A Methanol dehydrogenase 98.3 0.00027 9.2E-09 58.8 21.5 151 4-165 115-338 (571)
282 3m0c_C LDL receptor, low-densi 98.3 0.0012 4.1E-08 56.9 26.0 159 43-208 471-634 (791)
283 1ijq_A LDL receptor, low-densi 98.3 0.00052 1.8E-08 52.5 26.7 193 3-208 40-240 (316)
284 2xe4_A Oligopeptidase B; hydro 98.3 0.00034 1.2E-08 60.2 22.6 185 2-204 183-396 (751)
285 4hw6_A Hypothetical protein, I 98.3 0.0004 1.4E-08 55.6 21.1 199 44-252 140-371 (433)
286 3sov_A LRP-6, low-density lipo 98.2 0.00092 3.1E-08 51.2 26.4 158 44-208 80-240 (318)
287 2p9w_A MAL S 1 allergenic prot 98.2 0.00019 6.5E-09 54.7 16.5 157 45-206 15-215 (334)
288 3p5b_L Low density lipoprotein 98.2 0.0012 4.3E-08 52.2 28.0 160 43-209 159-323 (400)
289 1n7d_A LDL receptor, low-densi 98.2 3.3E-05 1.1E-09 65.7 13.5 157 45-208 455-616 (699)
290 1w6s_A Methanol dehydrogenase 98.1 0.0011 3.7E-08 55.3 21.4 146 7-164 124-344 (599)
291 3s94_A LRP-6, low-density lipo 98.0 0.0048 1.6E-07 51.8 27.4 191 7-208 319-512 (619)
292 3v9f_A Two-component system se 98.0 0.0074 2.5E-07 52.1 28.4 233 4-252 127-389 (781)
293 2p9w_A MAL S 1 allergenic prot 97.9 0.0008 2.7E-08 51.3 15.4 163 85-253 12-213 (334)
294 3amr_A 3-phytase; beta-propell 97.9 0.0043 1.5E-07 47.7 22.0 190 54-252 39-260 (355)
295 1flg_A Protein (quinoprotein e 97.9 0.0038 1.3E-07 52.0 19.8 55 106-164 291-357 (582)
296 3sre_A PON1, serum paraoxonase 97.9 0.0053 1.8E-07 47.6 20.1 186 46-243 53-285 (355)
297 3kya_A Putative phosphatase; s 97.8 0.002 6.7E-08 52.3 17.1 162 88-251 141-337 (496)
298 4a0p_A LRP6, LRP-6, low-densit 97.8 0.011 3.9E-07 49.6 29.1 162 43-208 340-510 (628)
299 2vpj_A Kelch-like protein 12; 97.7 0.0082 2.8E-07 45.3 17.8 186 5-208 15-233 (301)
300 2ism_A Putative oxidoreductase 97.7 0.011 3.6E-07 46.0 23.2 227 3-243 40-333 (352)
301 2xbg_A YCF48-like protein; pho 97.7 0.0098 3.4E-07 45.6 19.0 150 43-204 163-320 (327)
302 3ii7_A Kelch-like protein 7; p 97.7 0.0093 3.2E-07 45.1 20.4 186 5-208 12-227 (306)
303 3pbp_A Nucleoporin NUP82; beta 97.7 0.0082 2.8E-07 47.4 17.1 144 5-157 32-207 (452)
304 3pbp_A Nucleoporin NUP82; beta 97.6 0.016 5.6E-07 45.7 20.5 151 95-249 31-206 (452)
305 3amr_A 3-phytase; beta-propell 97.6 0.014 4.8E-07 44.9 21.0 185 5-205 41-262 (355)
306 3ei3_A DNA damage-binding prot 97.5 0.047 1.6E-06 49.3 24.6 221 14-251 808-1058(1158)
307 3ii7_A Kelch-like protein 7; p 97.5 0.016 5.4E-07 43.8 16.8 147 54-208 101-274 (306)
308 3a9g_A Putative uncharacterize 97.5 0.023 8E-07 44.1 23.5 222 4-242 39-329 (354)
309 4asc_A Kelch repeat and BTB do 97.5 0.021 7.3E-07 43.3 18.5 185 7-208 7-223 (315)
310 1zgk_A Kelch-like ECH-associat 97.5 0.021 7.2E-07 43.3 17.3 187 4-208 24-242 (308)
311 2xn4_A Kelch-like protein 2; s 97.4 0.021 7.1E-07 43.1 17.2 147 54-208 108-278 (302)
312 2uvk_A YJHT; unknown function, 97.4 0.021 7.2E-07 44.2 17.3 145 4-160 19-224 (357)
313 2vpj_A Kelch-like protein 12; 97.4 0.022 7.7E-07 42.8 17.5 147 54-208 112-280 (301)
314 2xzh_A Clathrin heavy chain 1; 97.4 0.028 9.5E-07 42.9 25.0 220 5-249 78-326 (365)
315 2xn4_A Kelch-like protein 2; s 97.4 0.027 9.1E-07 42.5 19.0 186 5-208 16-231 (302)
316 3sre_A PON1, serum paraoxonase 97.2 0.036 1.2E-06 43.0 16.2 138 104-252 81-249 (355)
317 4asc_A Kelch repeat and BTB do 97.1 0.05 1.7E-06 41.3 15.7 147 54-208 98-279 (315)
318 1bpo_A Protein (clathrin); cla 97.1 0.075 2.6E-06 42.2 25.3 219 6-249 78-325 (494)
319 1xi4_A Clathrin heavy chain; a 97.1 0.17 5.9E-06 46.4 20.3 189 5-211 77-294 (1630)
320 1zgk_A Kelch-like ECH-associat 97.0 0.074 2.5E-06 40.2 15.9 147 54-208 121-289 (308)
321 1bpo_A Protein (clathrin); cla 96.9 0.12 4.1E-06 41.1 22.7 192 6-207 117-332 (494)
322 1tl2_A L10, protein (tachylect 96.7 0.083 2.8E-06 37.9 12.9 107 131-248 42-156 (236)
323 1tl2_A L10, protein (tachylect 96.6 0.081 2.8E-06 37.9 12.2 151 43-208 41-210 (236)
324 2woz_A Kelch repeat and BTB do 96.6 0.16 5.4E-06 38.5 18.5 185 7-208 18-233 (318)
325 2zwa_A Leucine carboxyl methyl 96.5 0.35 1.2E-05 41.3 18.7 153 54-208 451-637 (695)
326 2xzh_A Clathrin heavy chain 1; 96.4 0.21 7.1E-06 38.2 26.8 197 49-253 73-288 (365)
327 2xbg_A YCF48-like protein; pho 96.4 0.22 7.5E-06 38.0 25.5 189 43-250 36-229 (327)
328 3das_A Putative oxidoreductase 96.4 0.23 8E-06 38.3 17.2 151 85-240 31-217 (347)
329 2ism_A Putative oxidoreductase 96.3 0.26 8.8E-06 38.2 21.5 101 44-149 32-153 (352)
330 3ei3_A DNA damage-binding prot 96.3 0.65 2.2E-05 42.1 27.7 187 43-242 554-754 (1158)
331 3ott_A Two-component system se 96.0 0.65 2.2E-05 39.9 25.3 184 43-242 103-296 (758)
332 2woz_A Kelch repeat and BTB do 96.0 0.36 1.2E-05 36.5 18.0 106 54-164 109-233 (318)
333 3ott_A Two-component system se 95.9 0.73 2.5E-05 39.6 23.8 188 43-252 63-257 (758)
334 1cru_A Protein (soluble quinop 95.9 0.54 1.8E-05 37.8 19.4 107 86-194 27-162 (454)
335 3a9g_A Putative uncharacterize 95.8 0.45 1.6E-05 36.8 21.3 103 43-149 29-153 (354)
336 1xi4_A Clathrin heavy chain; a 95.6 0.81 2.8E-05 42.2 16.2 192 5-206 116-331 (1630)
337 2uvk_A YJHT; unknown function, 95.2 0.77 2.6E-05 35.3 16.9 139 65-209 168-345 (357)
338 2be1_A Serine/threonine-protei 95.1 0.66 2.3E-05 35.7 12.3 107 6-120 12-135 (339)
339 2g8s_A Glucose/sorbosone dehyd 94.6 1.2 4E-05 34.5 25.4 73 175-253 271-350 (353)
340 2be1_A Serine/threonine-protei 92.4 0.66 2.2E-05 35.7 8.0 110 55-165 10-133 (339)
341 2zwa_A Leucine carboxyl methyl 92.2 5 0.00017 34.2 13.9 109 54-164 500-637 (695)
342 2g8s_A Glucose/sorbosone dehyd 91.5 3.8 0.00013 31.5 23.3 104 43-149 18-148 (353)
343 3qhy_B Beta-lactamase inhibito 90.6 4.1 0.00014 30.3 20.0 180 43-251 24-203 (282)
344 3s25_A Hypothetical 7-bladed b 90.4 4.5 0.00015 30.4 16.9 135 54-208 24-178 (302)
345 3sbq_A Nitrous-oxide reductase 90.3 1.3 4.5E-05 36.5 8.0 80 174-253 322-406 (638)
346 1cru_A Protein (soluble quinop 89.3 7.4 0.00025 31.2 20.9 106 43-150 27-163 (454)
347 3sbq_A Nitrous-oxide reductase 88.9 4.2 0.00014 33.7 9.7 74 131-207 324-409 (638)
348 3qhy_B Beta-lactamase inhibito 88.6 6.1 0.00021 29.4 23.0 180 43-251 63-242 (282)
349 3b7f_A Glycosyl hydrolase, BNR 87.2 9 0.00031 29.8 23.0 150 43-197 55-254 (394)
350 3q6k_A 43.2 kDa salivary prote 85.9 11 0.00037 29.5 21.4 172 66-241 124-340 (381)
351 2wg3_C Hedgehog-interacting pr 85.1 14 0.00046 29.8 19.2 109 86-195 14-158 (463)
352 3s25_A Hypothetical 7-bladed b 82.6 13 0.00045 27.9 18.0 138 50-208 60-218 (302)
353 1sqj_A OXG-RCBH, oligoxylogluc 81.7 26 0.00087 30.5 22.0 150 43-196 15-190 (789)
354 4gq2_M Nucleoporin NUP120; bet 78.0 4.4 0.00015 36.0 6.2 37 44-81 237-273 (950)
355 3b7f_A Glycosyl hydrolase, BNR 75.8 26 0.00088 27.2 22.4 141 55-200 22-202 (394)
356 3f7f_A Nucleoporin NUP120; nuc 75.1 8.5 0.00029 32.9 6.8 36 44-82 223-258 (729)
357 3das_A Putative oxidoreductase 74.7 27 0.00092 26.9 25.9 158 43-206 32-233 (347)
358 4fhn_B Nucleoporin NUP120; pro 71.6 4.9 0.00017 36.5 5.0 37 44-81 239-275 (1139)
359 4fhn_B Nucleoporin NUP120; pro 62.9 16 0.00055 33.2 6.5 34 88-121 240-274 (1139)
360 2cn3_A Xyloglucanase, beta-1,4 62.5 75 0.0026 27.3 22.7 107 44-151 24-153 (737)
361 3zwu_A Alkaline phosphatase PH 58.0 40 0.0014 28.2 7.5 58 177-241 478-547 (592)
362 4a9v_A PHOX; hydrolase, beta-p 55.2 57 0.002 27.2 7.8 59 176-242 477-548 (592)
363 4hvt_A Ritya.17583.B, post-pro 54.7 1E+02 0.0035 26.4 19.6 195 45-247 131-371 (711)
364 3f7f_A Nucleoporin NUP120; nuc 54.1 20 0.00068 30.7 5.1 35 87-122 223-257 (729)
365 3zwu_A Alkaline phosphatase PH 54.0 41 0.0014 28.1 6.9 58 132-193 478-548 (592)
366 1suu_A DNA gyrase subunit A; t 51.7 74 0.0025 23.9 17.1 153 95-252 7-178 (312)
367 3kci_A Probable E3 ubiquitin-p 49.9 88 0.003 24.2 24.3 198 44-251 54-289 (389)
368 4a9v_A PHOX; hydrolase, beta-p 48.0 1.1E+02 0.0037 25.6 8.3 59 131-193 477-548 (592)
369 1suu_A DNA gyrase subunit A; t 45.5 95 0.0032 23.3 22.7 194 53-252 6-228 (312)
370 3no0_A DNA gyrase subunit A; D 45.2 90 0.0031 23.0 23.2 211 30-250 13-239 (276)
371 1sqj_A OXG-RCBH, oligoxylogluc 40.9 1.8E+02 0.0061 25.2 19.5 108 43-151 64-190 (789)
372 4gq2_M Nucleoporin NUP120; bet 39.5 2.1E+02 0.0071 25.6 22.4 32 176-208 237-268 (950)
373 1q47_A Semaphorin 3A; beta pro 36.7 95 0.0033 25.3 6.4 74 177-250 406-487 (495)
374 1q47_A Semaphorin 3A; beta pro 36.0 1.3E+02 0.0045 24.5 7.1 57 144-201 423-487 (495)
375 3no0_A DNA gyrase subunit A; D 35.6 1.3E+02 0.0045 22.1 20.4 157 43-207 68-247 (276)
376 1ukf_A Avirulence protein AVRP 30.7 30 0.001 23.8 2.2 35 174-208 118-152 (188)
377 3q6k_A 43.2 kDa salivary prote 30.5 1.9E+02 0.0066 22.5 16.0 141 107-252 124-303 (381)
378 3uc1_A DNA gyrase subunit A; D 28.3 1.9E+02 0.0066 21.9 22.8 202 43-251 42-275 (327)
379 1olz_A Semaphorin 4D; developm 26.8 1.1E+02 0.0039 25.9 5.5 58 189-250 417-477 (663)
380 3a0f_A Xyloglucanase; beta-pro 25.1 3.3E+02 0.011 23.5 26.2 158 43-205 21-210 (763)
381 3nvq_A Semaphorin-7A; beta-pro 24.8 2.2E+02 0.0076 23.8 6.7 59 143-202 381-445 (590)
382 4gz8_A Semaphorin-3A; multi-do 24.0 1.1E+02 0.0036 26.2 4.8 62 189-250 431-495 (667)
383 3nvq_A Semaphorin-7A; beta-pro 22.2 1.6E+02 0.0054 24.7 5.4 62 189-250 382-444 (590)
384 3ol2_B Plexin-B1; beta-propell 22.1 2.5E+02 0.0085 23.1 6.5 71 177-250 389-461 (528)
385 3al9_A Plexin-A2; beta-propell 22.0 3.3E+02 0.011 22.4 7.3 65 87-152 401-472 (539)
386 4gz8_A Semaphorin-3A; multi-do 21.8 2.7E+02 0.0093 23.7 6.8 57 144-201 431-495 (667)
No 1
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.6e-45 Score=284.97 Aligned_cols=233 Identities=17% Similarity=0.255 Sum_probs=194.2
Q ss_pred CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558 4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI 82 (253)
Q Consensus 4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 82 (253)
++.+++++.+ +|+|||+.+++........+.+|. ..|++++|+ +++++|++|+.|++|++||+++++.+..+.
T Consensus 93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~-----~~V~~v~~s-pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~ 166 (344)
T 4gqb_B 93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHD-----DIVSTVSVL-SSGTQAVSGSKDICIKVWDLAQQVVLSSYR 166 (344)
T ss_dssp TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCS-----SCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CCeEEEEECCCEEEEEeccCCCceeEeeccccCCC-----CCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 3444444446 999999988622222334456888 899999999 899999999999999999999999999999
Q ss_pred cccccEEEEEec-CC-CeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558 83 AHDKEVYDIAWG-GV-GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160 (253)
Q Consensus 83 ~~~~~v~~~~~~-~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~ 160 (253)
+|...|.+++|+ ++ .+|++++.|++|++||+++++....+.. ..+...+.+++|+|.+++++++|+.|+. |++||+
T Consensus 167 ~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~l~sg~~dg~-v~~wd~ 244 (344)
T 4gqb_B 167 AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC-SAPGYLPTSLAWHPQQSEVFVFGDENGT-VSLVDT 244 (344)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEETTSE-EEEEES
T ss_pred CcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec-ceeeccceeeeecCCCCcceEEeccCCc-EEEEEC
Confidence 999999999999 55 5789999999999999999876544432 2344478999999977889999999998 999999
Q ss_pred CCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE
Q 035558 161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 240 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 240 (253)
++.+ ++..+.+|...|++++|+|++.++|++|+.|++|+|||+++++. ....+|...|++++|+|+++.++
T Consensus 245 ~~~~-~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~--------~~~~~H~~~V~~v~~sp~~~~ll 315 (344)
T 4gqb_B 245 KSTS-CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL--------FRSQAHRDFVRDATWSPLNHSLL 315 (344)
T ss_dssp CC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE--------EEECCCSSCEEEEEECSSSTTEE
T ss_pred CCCc-EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE--------EEEcCCCCCEEEEEEeCCCCeEE
Confidence 9866 48899999999999999999866899999999999999987642 35678999999999999998766
Q ss_pred -EEEcCCcEEEEEC
Q 035558 241 -AIAFSTKLQILRV 253 (253)
Q Consensus 241 -~~~~~~~i~vw~l 253 (253)
+++.|+.|++|++
T Consensus 316 as~s~D~~v~~w~v 329 (344)
T 4gqb_B 316 TTVGWDHQVVHHVV 329 (344)
T ss_dssp EEEETTSCEEEEEC
T ss_pred EEEcCCCeEEEEEC
Confidence 6889999999985
No 2
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.6e-43 Score=268.87 Aligned_cols=230 Identities=16% Similarity=0.143 Sum_probs=201.2
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
+++.+|++++ | .|++||+.++ +....+..|. .+|.+++|+ +++++|++|+.|+.|++||+++++.+..
T Consensus 23 p~~~~l~s~~~dg~v~lWd~~~~----~~~~~~~~~~-----~~v~~~~~~-~~~~~l~s~s~d~~i~vwd~~~~~~~~~ 92 (304)
T 2ynn_A 23 PTEPWVLTTLYSGRVELWNYETQ----VEVRSIQVTE-----TPVRAGKFI-ARKNWIIVGSDDFRIRVFNYNTGEKVVD 92 (304)
T ss_dssp SSSSEEEEEETTSEEEEEETTTT----EEEEEEECCS-----SCEEEEEEE-GGGTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCCCEEEEEcCCCcEEEEECCCC----ceeEEeeccC-----CcEEEEEEe-CCCCEEEEECCCCEEEEEECCCCcEEEE
Confidence 3566777776 5 9999999987 7788899998 899999999 8999999999999999999999999999
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
+.+|...|.+++|+ ++.+|++|+.|++|++||++++... ......|...|.+++|+|.++.+|++++.|+. |++||
T Consensus 93 ~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~--~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~-v~iwd 169 (304)
T 2ynn_A 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL--EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT-VKVWS 169 (304)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEE--EEEECCCCSCEEEEEECTTCTTEEEEEETTSE-EEEEE
T ss_pred EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcch--hhhhcccCCcEEEEEECCCCCCEEEEEeCCCe-EEEEE
Confidence 99999999999999 9999999999999999999887532 23345677799999999977899999999998 99999
Q ss_pred CCCCCCCeeeecccccceeEEEEec--CCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC
Q 035558 160 IRFPTLPVVELQRHQASVNAIAWAP--HSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP 237 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 237 (253)
++...........|...+..++|+| ++ .+|++|+.|++|++||+++++.. ..+.+|...|..++|+|+++
T Consensus 170 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~D~~i~iWd~~~~~~~-------~~~~~h~~~v~~~~~~p~~~ 241 (304)
T 2ynn_A 170 LGQSTPNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKSCV-------ATLEGHMSNVSFAVFHPTLP 241 (304)
T ss_dssp TTCSSCSEEEECCCTTCEEEEEECCSTTC-CEEEEEETTSEEEEEETTTTEEE-------EEEECCSSCEEEEEECSSSS
T ss_pred CCCCCccceeccCCcCcEEEEEEEEcCCC-CEEEEEcCCCeEEEEeCCCCccc-------eeeCCCCCCEEEEEECCCCC
Confidence 9886654444456778899999987 55 59999999999999999987644 36778999999999999999
Q ss_pred ceEEEEcCCcEEEEEC
Q 035558 238 DWVAIAFSTKLQILRV 253 (253)
Q Consensus 238 ~~~~~~~~~~i~vw~l 253 (253)
.+++++.|+.|++|++
T Consensus 242 ~l~s~s~Dg~i~iWd~ 257 (304)
T 2ynn_A 242 IIISGSEDGTLKIWNS 257 (304)
T ss_dssp EEEEEETTSCEEEEET
T ss_pred EEEEEcCCCeEEEEEC
Confidence 8999999999999985
No 3
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4e-43 Score=276.11 Aligned_cols=233 Identities=18% Similarity=0.286 Sum_probs=192.8
Q ss_pred CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558 4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI 82 (253)
Q Consensus 4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 82 (253)
++.+++++.+ +|+|||+.++...........+|. ..|++++|+ |++++|++|+.|+.|++||+++++.+..+.
T Consensus 105 d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~-----~~V~~v~~s-pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~ 178 (357)
T 4g56_B 105 EKGILVASDSGAVELWEILEKESLLVNKFAKYEHD-----DIVKTLSVF-SDGTQAVSGGKDFSVKVWDLSQKAVLKSYN 178 (357)
T ss_dssp TTEEEEEETTSCEEEC--------CCCCEEECCCS-----SCEEEEEEC-SSSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CCCEEEEECCCEEEEeeccccceeEEEeeccCCCC-----CCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 4567777777 999999988622222233445777 899999999 899999999999999999999999999999
Q ss_pred cccccEEEEEec-CC-CeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558 83 AHDKEVYDIAWG-GV-GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160 (253)
Q Consensus 83 ~~~~~v~~~~~~-~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~ 160 (253)
+|...|++++|+ ++ .++++++.||+|++||+++++....+. ...+...+.+++|+|..+.+|++++.++. |++||+
T Consensus 179 ~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~-~~~~~~~v~~v~~sp~~~~~la~g~~d~~-i~~wd~ 256 (357)
T 4g56_B 179 AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID-FCASDTIPTSVTWHPEKDDTFACGDETGN-VSLVNI 256 (357)
T ss_dssp CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC-CTTCCSCEEEEEECTTSTTEEEEEESSSC-EEEEES
T ss_pred CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee-eccccccccchhhhhcccceEEEeecccc-eeEEEC
Confidence 999999999999 54 589999999999999999887544332 23455689999999966789999999998 999999
Q ss_pred CCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcC-CCCce
Q 035558 161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS-SQPDW 239 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~ 239 (253)
++.+ ++..+..|...|++++|+|++.++|++|+.|++|+|||+++++. ....+|...|++++|+| ++..|
T Consensus 257 ~~~~-~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~--------~~~~~H~~~V~~vafsP~d~~~l 327 (357)
T 4g56_B 257 KNPD-SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV--------FRDLSHRDFVTGVAWSPLDHSKF 327 (357)
T ss_dssp SCGG-GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE--------EEECCCSSCEEEEEECSSSTTEE
T ss_pred CCCc-EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE--------eEECCCCCCEEEEEEeCCCCCEE
Confidence 9866 47889999999999999999866899999999999999987652 35568999999999998 67778
Q ss_pred EEEEcCCcEEEEEC
Q 035558 240 VAIAFSTKLQILRV 253 (253)
Q Consensus 240 ~~~~~~~~i~vw~l 253 (253)
++++.|+.|++|++
T Consensus 328 ~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 328 TTVGWDHKVLHHHL 341 (357)
T ss_dssp EEEETTSCEEEEEC
T ss_pred EEEcCCCeEEEEEC
Confidence 89999999999986
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.7e-42 Score=267.62 Aligned_cols=226 Identities=16% Similarity=0.299 Sum_probs=203.2
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
++.++++++ | +|++||+.++ +....+..|. ..+.+++|+ |++++|++|+.||.|++|++++++....+
T Consensus 91 ~~~~l~s~s~D~~i~lWd~~~~----~~~~~~~~~~-----~~~~~~~~s-pdg~~l~~g~~dg~v~i~~~~~~~~~~~~ 160 (321)
T 3ow8_A 91 TLPIAASSSLDAHIRLWDLENG----KQIKSIDAGP-----VDAWTLAFS-PDSQYLATGTHVGKVNIFGVESGKKEYSL 160 (321)
T ss_dssp SSSEEEEEETTSEEEEEETTTT----EEEEEEECCT-----TCCCCEEEC-TTSSEEEEECTTSEEEEEETTTCSEEEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCC----CEEEEEeCCC-----ccEEEEEEC-CCCCEEEEEcCCCcEEEEEcCCCceeEEe
Confidence 456777777 5 9999999987 7788888887 789999999 89999999999999999999999988888
Q ss_pred ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558 82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160 (253)
Q Consensus 82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~ 160 (253)
..|...|.+++|+ ++++|++++.||.|++||+++++. +.....+..+|.+++|+| ++++|++++.|+. |++||+
T Consensus 161 ~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~-i~iwd~ 235 (321)
T 3ow8_A 161 DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL---LHTLEGHAMPIRSLTFSP-DSQLLVTASDDGY-IKIYDV 235 (321)
T ss_dssp ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE---EEEECCCSSCCCEEEECT-TSCEEEEECTTSC-EEEEET
T ss_pred cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE---EEEEcccCCceeEEEEcC-CCCEEEEEcCCCe-EEEEEC
Confidence 8899999999999 999999999999999999998863 333456777999999999 9999999999999 999999
Q ss_pred CCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE
Q 035558 161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 240 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 240 (253)
+... ....+.+|...|.+++|+|++ .+|++++.|++|++||++++.... .+.+|...|.+++|+|+++.++
T Consensus 236 ~~~~-~~~~~~~h~~~v~~~~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~-------~~~~h~~~v~~v~~s~~g~~l~ 306 (321)
T 3ow8_A 236 QHAN-LAGTLSGHASWVLNVAFCPDD-THFVSSSSDKSVKVWDVGTRTCVH-------TFFDHQDQVWGVKYNGNGSKIV 306 (321)
T ss_dssp TTCC-EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEE-------EECCCSSCEEEEEECTTSSEEE
T ss_pred CCcc-eeEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCEEEE-------EEcCCCCcEEEEEECCCCCEEE
Confidence 9765 478889999999999999999 699999999999999998876443 6678999999999999999999
Q ss_pred EEEcCCcEEEEEC
Q 035558 241 AIAFSTKLQILRV 253 (253)
Q Consensus 241 ~~~~~~~i~vw~l 253 (253)
+++.|+.|++|++
T Consensus 307 s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 307 SVGDDQEIHIYDC 319 (321)
T ss_dssp EEETTCCEEEEEC
T ss_pred EEeCCCeEEEEeC
Confidence 9999999999985
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.9e-42 Score=266.76 Aligned_cols=229 Identities=19% Similarity=0.349 Sum_probs=201.4
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
+++.+|++|+ | +|++|++..+ .......+.+|. ..|.+++|+ +++.++++++.|++|++||+++++.+..
T Consensus 46 ~~~~~l~tgs~D~~v~vW~~~~~--~~~~~~~l~gh~-----~~v~~~~~~-~~~~~l~s~s~D~~i~lWd~~~~~~~~~ 117 (321)
T 3ow8_A 46 ENSETVVTGSLDDLVKVWKWRDE--RLDLQWSLEGHQ-----LGVVSVDIS-HTLPIAASSSLDAHIRLWDLENGKQIKS 117 (321)
T ss_dssp ---CEEEEEETTSCEEEEEEETT--EEEEEEEECCCS-----SCEEEEEEC-SSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEcCCCCEEEEECCCC--CeeeeeeeccCC-----CCEEEEEEC-CCCCEEEEEeCCCcEEEEECCCCCEEEE
Confidence 3577889888 5 9999999874 233456788999 899999999 8899999999999999999999999999
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
+..|...+.+++|+ ++++|++++.||.|++||+++++....+ ..+...+.+++|+| ++++|++++.|+. |++||
T Consensus 118 ~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~---~~~~~~v~~~~~sp-dg~~lasg~~dg~-i~iwd 192 (321)
T 3ow8_A 118 IDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL---DTRGKFILSIAYSP-DGKYLASGAIDGI-INIFD 192 (321)
T ss_dssp EECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE---ECSSSCEEEEEECT-TSSEEEEEETTSC-EEEEE
T ss_pred EeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe---cCCCceEEEEEECC-CCCEEEEEcCCCe-EEEEE
Confidence 99999999999999 9999999999999999999988744333 34455899999999 9999999999999 99999
Q ss_pred CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558 160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW 239 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 239 (253)
+++.+ .+..+.+|..+|.+++|+|++ ++|++|+.|+.|++||++..... ..+.+|...|.+++|+|+++.+
T Consensus 193 ~~~~~-~~~~~~~h~~~v~~l~~spd~-~~l~s~s~dg~i~iwd~~~~~~~-------~~~~~h~~~v~~~~~sp~~~~l 263 (321)
T 3ow8_A 193 IATGK-LLHTLEGHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHANLA-------GTLSGHASWVLNVAFCPDDTHF 263 (321)
T ss_dssp TTTTE-EEEEECCCSSCCCEEEECTTS-CEEEEECTTSCEEEEETTTCCEE-------EEECCCSSCEEEEEECTTSSEE
T ss_pred CCCCc-EEEEEcccCCceeEEEEcCCC-CEEEEEcCCCeEEEEECCCccee-------EEEcCCCCceEEEEECCCCCEE
Confidence 99865 478889999999999999999 69999999999999999886643 3677899999999999999999
Q ss_pred EEEEcCCcEEEEEC
Q 035558 240 VAIAFSTKLQILRV 253 (253)
Q Consensus 240 ~~~~~~~~i~vw~l 253 (253)
++++.|+.|++|++
T Consensus 264 ~s~s~D~~v~iwd~ 277 (321)
T 3ow8_A 264 VSSSSDKSVKVWDV 277 (321)
T ss_dssp EEEETTSCEEEEET
T ss_pred EEEeCCCcEEEEeC
Confidence 99999999999985
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.7e-42 Score=274.31 Aligned_cols=228 Identities=18% Similarity=0.263 Sum_probs=203.5
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
+++.+|++|+ | +|++||+... +++..+.+|. ..|.+++|+ |++++|++|+.|++|++||+++++.+..
T Consensus 160 ~~~~~l~sgs~D~~i~iwd~~~~----~~~~~~~~h~-----~~V~~v~~~-p~~~~l~s~s~D~~i~~wd~~~~~~~~~ 229 (410)
T 1vyh_C 160 HSGKLLASCSADMTIKLWDFQGF----ECIRTMHGHD-----HNVSSVSIM-PNGDHIVSASRDKTIKMWEVQTGYCVKT 229 (410)
T ss_dssp TTSSEEEEEETTSCCCEEETTSS----CEEECCCCCS-----SCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCCCEEEEEeCCCeEEEEeCCCC----ceeEEEcCCC-----CCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 3567888877 5 9999999887 7888999998 899999999 8899999999999999999999999999
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC------------------
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD------------------ 141 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------------ 141 (253)
+.+|...|.++.++ ++.+|++|+.|++|++||+++.+... ....|...|.+++|+|..
T Consensus 230 ~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (410)
T 1vyh_C 230 FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA---ELREHRHVVECISWAPESSYSSISEATGSETKKSGK 306 (410)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECCSCGGGGGGGCCSCC------
T ss_pred EeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceee---EecCCCceEEEEEEcCcccccchhhhccccccccCC
Confidence 99999999999999 99999999999999999999887433 334667799999999832
Q ss_pred -CCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeee
Q 035558 142 -PRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILA 220 (253)
Q Consensus 142 -~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 220 (253)
+.++++++.|+. |++||++++. ++..+.+|...|.+++|+|++ .+|++|+.||+|++||+.+++.. ..+
T Consensus 307 ~g~~l~sgs~D~~-i~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~~~~~-------~~~ 376 (410)
T 1vyh_C 307 PGPFLLSGSRDKT-IKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCM-------KTL 376 (410)
T ss_dssp -CCEEEEEETTSE-EEEEETTTTE-EEEEEECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSCCC-------EEE
T ss_pred CCCEEEEEeCCCe-EEEEECCCCc-eEEEEECCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceE-------EEE
Confidence 668999999998 9999999865 478889999999999999999 69999999999999999876644 367
Q ss_pred ccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 221 YTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 221 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
.+|...|++++|+|+++++++++.|+.|++|++
T Consensus 377 ~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 377 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 789999999999999999999999999999985
No 7
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-41 Score=272.47 Aligned_cols=227 Identities=17% Similarity=0.267 Sum_probs=203.7
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
++.+|++|+ | .|++||+.++ +....+++|. ..|.+++|+ +++++|++|+.|++|++||+.+++.+..+
T Consensus 119 ~~~~l~s~s~Dg~i~vwd~~~~----~~~~~l~~h~-----~~V~~v~~~-~~~~~l~sgs~D~~i~iwd~~~~~~~~~~ 188 (410)
T 1vyh_C 119 VFSVMVSASEDATIKVWDYETG----DFERTLKGHT-----DSVQDISFD-HSGKLLASCSADMTIKLWDFQGFECIRTM 188 (410)
T ss_dssp SSSEEEEEESSSCEEEEETTTC----CCCEEECCCS-----SCEEEEEEC-TTSSEEEEEETTSCCCEEETTSSCEEECC
T ss_pred CCCEEEEEeCCCeEEEEECCCC----cEEEEEeccC-----CcEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCceeEEE
Confidence 466777777 5 9999999987 7888999999 899999999 88999999999999999999999999999
Q ss_pred ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558 82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160 (253)
Q Consensus 82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~ 160 (253)
.+|...|.+++|+ ++++|++|+.|++|++||++++.....+ ..|...|.+++|+| ++.++++++.|+. |++||+
T Consensus 189 ~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~---~~h~~~v~~~~~~~-~g~~l~s~s~D~~-v~vwd~ 263 (410)
T 1vyh_C 189 HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF---TGHREWVRMVRPNQ-DGTLIASCSNDQT-VRVWVV 263 (410)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE---ECCSSCEEEEEECT-TSSEEEEEETTSC-EEEEET
T ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE---eCCCccEEEEEECC-CCCEEEEEcCCCe-EEEEEC
Confidence 9999999999999 9999999999999999999998754433 46667899999999 9999999999999 999999
Q ss_pred CCCCCCeeeecccccceeEEEEecCC-------------------CCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeec
Q 035558 161 RFPTLPVVELQRHQASVNAIAWAPHS-------------------SCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAY 221 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~~~~~~~-------------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 221 (253)
++.. +...+..|...|.+++|+|++ +.+|++|+.|+.|++||++++.... .+.
T Consensus 264 ~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~-------~~~ 335 (410)
T 1vyh_C 264 ATKE-CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM-------TLV 335 (410)
T ss_dssp TTCC-EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE-------EEE
T ss_pred CCCc-eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEE-------EEE
Confidence 8865 477888999999999999962 1489999999999999999876443 677
Q ss_pred cCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 222 TAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 222 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
+|...|.+++|+|+++++++++.|+.|++|++
T Consensus 336 ~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~ 367 (410)
T 1vyh_C 336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367 (410)
T ss_dssp CCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 89999999999999999999999999999985
No 8
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.3e-40 Score=254.17 Aligned_cols=238 Identities=19% Similarity=0.292 Sum_probs=193.6
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCC-CCCEEEEEeCCCeEEEEeccCce--e
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEA-EPRRIGTSSIDTTCTIWDIEREA--V 77 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~--~ 77 (253)
+++++|++++ | +|+||++... ..+...++.+|. ++|.+++|+|+ ++++|++|+.|++|++||+++++ .
T Consensus 19 ~~g~~las~s~D~~v~iw~~~~~--~~~~~~~l~gH~-----~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~ 91 (297)
T 2pm7_B 19 YYGKRMATCSSDKTIKIFEVEGE--THKLIDTLTGHE-----GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQ 91 (297)
T ss_dssp TTSSEEEEEETTSCEEEEEBCSS--CBCCCEEECCCS-----SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCC
T ss_pred CCCCEEEEEeCCCEEEEEecCCC--CcEEEEEEcccc-----CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEE
Confidence 4577888887 5 9999999752 225678899999 89999999844 48999999999999999998774 5
Q ss_pred eeeeecccccEEEEEec-C--CCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC------------C
Q 035558 78 DTQLIAHDKEVYDIAWG-G--VGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD------------P 142 (253)
Q Consensus 78 ~~~~~~~~~~v~~~~~~-~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------~ 142 (253)
+..+.+|...|.+++|+ + +.+|++++.|+.|++||+++...... .....|...|.+++|+|.. +
T Consensus 92 ~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~-~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~ 170 (297)
T 2pm7_B 92 IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP-IIIDAHAIGVNSASWAPATIEEDGEHNGTKES 170 (297)
T ss_dssp CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC-EEEECCSSCEEEEEECCCC------------C
T ss_pred EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee-eeeecccCccceEeecCCcccccccCCCCCCc
Confidence 55677899999999999 5 78999999999999999987642211 2234566799999999931 5
Q ss_pred CEEEEEEeCCCeEEEEECCCCCC---CeeeecccccceeEEEEecCC--CCeEEEecCCCcEEEEeccCCCCCCCCCCCC
Q 035558 143 RYMATIIMDSAKVVVLDIRFPTL---PVVELQRHQASVNAIAWAPHS--SCHICTAGDDSQALIWDLSSMGQPVEGGLDP 217 (253)
Q Consensus 143 ~~l~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 217 (253)
++|++++.|+. |++||+++... ....+.+|...|.+++|+|++ ..+|++++.|++|++||++....+. ..
T Consensus 171 ~~l~sgs~D~~-v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~----~~ 245 (297)
T 2pm7_B 171 RKFVTGGADNL-VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPW----KK 245 (297)
T ss_dssp CEEEEEETTSC-EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCC----EE
T ss_pred ceEEEEcCCCc-EEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCcc----ce
Confidence 79999999999 99999987552 346788999999999999985 3699999999999999998754221 00
Q ss_pred eee--ccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 218 ILA--YTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 218 ~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
... ..|...|.+++|+|+++.|++++.|+.|++|++
T Consensus 246 ~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 246 TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (297)
T ss_dssp EESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred eeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence 112 467889999999999999999999999999973
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.7e-40 Score=258.93 Aligned_cols=240 Identities=18% Similarity=0.337 Sum_probs=196.7
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc--eee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE--AVD 78 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~ 78 (253)
+++.+||+++ | .|+||++..+ ..........+|. ..|.+++|+ |++++|++|+.|+.|++|++..+ +.+
T Consensus 26 p~g~~las~~~D~~i~iw~~~~~-~~~~~~~~~~~h~-----~~v~~~~~s-p~g~~l~s~s~D~~v~iw~~~~~~~~~~ 98 (345)
T 3fm0_A 26 PAGTLLASCGGDRRIRIWGTEGD-SWICKSVLSEGHQ-----RTVRKVAWS-PCGNYLASASFDATTCIWKKNQDDFECV 98 (345)
T ss_dssp TTSSCEEEEETTSCEEEEEEETT-EEEEEEEECSSCS-----SCEEEEEEC-TTSSEEEEEETTSCEEEEEECCC-EEEE
T ss_pred CCCCEEEEEcCCCeEEEEEcCCC-cceeeeeeccccC-----CcEEEEEEC-CCCCEEEEEECCCcEEEEEccCCCeEEE
Confidence 3577888877 5 9999999875 1111122346788 899999999 89999999999999999999876 456
Q ss_pred eeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558 79 TQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV 157 (253)
Q Consensus 79 ~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~ 157 (253)
..+.+|...|.+++|+ ++++|++++.|++|++||+++......+.....|...|.+++|+| ++.+|++++.|+. |++
T Consensus 99 ~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~-i~~ 176 (345)
T 3fm0_A 99 TTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDT-VKL 176 (345)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSC-EEE
T ss_pred EEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCc-EEE
Confidence 7888999999999999 999999999999999999998765555555667778999999999 8999999999999 999
Q ss_pred EECCCCC-CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCC---CC-----Ceeec-cCCCce
Q 035558 158 LDIRFPT-LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGG---LD-----PILAY-TAGAEI 227 (253)
Q Consensus 158 ~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~-----~~~~~-~~~~~v 227 (253)
||.+... .+...+.+|...|++++|+|++ ++|++++.|++|++||........... .. ..... .|...|
T Consensus 177 w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 255 (345)
T 3fm0_A 177 YREEEDDWVCCATLEGHESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTI 255 (345)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCE
T ss_pred EEecCCCEEEEEEecCCCCceEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcE
Confidence 9998754 2356788999999999999999 699999999999999975443221000 00 01122 388899
Q ss_pred eEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 228 EQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
.+++|+|++..+++++.|+.+++|+
T Consensus 256 ~~v~~~~~~~~l~s~~~d~~i~vw~ 280 (345)
T 3fm0_A 256 YDIAWCQLTGALATACGDDAIRVFQ 280 (345)
T ss_dssp EEEEECTTTCCEEEEETTSCEEEEE
T ss_pred EEEEEecCCCEEEEEeCCCeEEEEE
Confidence 9999999999999999999999997
No 10
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.6e-40 Score=256.96 Aligned_cols=232 Identities=20% Similarity=0.374 Sum_probs=193.1
Q ss_pred CCCCceEEeec-C-cEEEEEccCCcc---ccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce
Q 035558 2 CQKPDLLATSS-D-FLRVWRISDEDR---RVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA 76 (253)
Q Consensus 2 p~~~~~l~~~~-~-~v~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 76 (253)
|+++.+|++|+ | +|++||+..... ...+...+.+|. ..|.+++|+ +++.++++|+.|++|++||+++++
T Consensus 36 ~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~-----~~V~~~~~~-~~~~~l~s~s~D~~v~lwd~~~~~ 109 (343)
T 2xzm_R 36 NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN-----HFVSDLALS-QENCFAISSSWDKTLRLWDLRTGT 109 (343)
T ss_dssp TCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCS-----SCEEEEEEC-SSTTEEEEEETTSEEEEEETTSSC
T ss_pred CCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCC-----CceEEEEEC-CCCCEEEEEcCCCcEEEEECCCCc
Confidence 44788999988 4 999999975311 124566788998 899999999 889999999999999999999999
Q ss_pred eeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCC----------CEE
Q 035558 77 VDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDP----------RYM 145 (253)
Q Consensus 77 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~l 145 (253)
.+..+.+|...|.+++|+ ++++|++++.|++|++||+.... .........+...|.+++|+| ++ .++
T Consensus 110 ~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l 187 (343)
T 2xzm_R 110 TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYF 187 (343)
T ss_dssp EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEE
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCceeeeeeecc-ccccccccCCCCCEE
Confidence 999999999999999999 99999999999999999998432 222223335667899999999 54 789
Q ss_pred EEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCC
Q 035558 146 ATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGA 225 (253)
Q Consensus 146 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 225 (253)
++++.|+. |++||.+ ......+.+|...|.+++|+|++ ++|++|+.||.|++||+.....+. ....+..
T Consensus 188 ~s~~~d~~-i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~~-------~~~~~~~ 256 (343)
T 2xzm_R 188 ASVGWDGR-LKVWNTN--FQIRYTFKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTYPQ-------REFDAGS 256 (343)
T ss_dssp EEEETTSE-EEEEETT--TEEEEEEECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSSCS-------EEEECSS
T ss_pred EEEcCCCE-EEEEcCC--CceeEEEcCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCcccc-------eeecCCC
Confidence 99999998 9999954 23467788999999999999999 699999999999999996554333 3444567
Q ss_pred ceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 226 EIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 226 ~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
.|.+++|+|+++ +++++.|+.+++|++
T Consensus 257 ~v~~v~~sp~~~-~la~~~d~~v~iw~~ 283 (343)
T 2xzm_R 257 TINQIAFNPKLQ-WVAVGTDQGVKIFNL 283 (343)
T ss_dssp CEEEEEECSSSC-EEEEEESSCEEEEES
T ss_pred cEEEEEECCCCC-EEEEECCCCEEEEEe
Confidence 799999999986 677888999999985
No 11
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.3e-40 Score=257.29 Aligned_cols=229 Identities=17% Similarity=0.283 Sum_probs=196.6
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
+++.+|++++ + .|++|++............+.+|. ..|.++.|+ +++ .+++++.|+.|++||+++++.+..
T Consensus 107 ~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~-~~~-~l~s~s~d~~i~~wd~~~~~~~~~ 179 (340)
T 1got_B 107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT-----GYLSCCRFL-DDN-QIVTSSGDTTCALWDIETGQQTTT 179 (340)
T ss_dssp TTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCS-----SCEEEEEEE-ETT-EEEEEETTSCEEEEETTTTEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCC-----ccEEEEEEC-CCC-cEEEEECCCcEEEEECCCCcEEEE
Confidence 3567778777 5 999999987534445677788998 899999998 544 588999999999999999999999
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
+.+|...|.+++|+ +++++++|+.|+.|++||++++... .....|...|.+++|+| ++++|++++.|+. |++||
T Consensus 180 ~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~---~~~~~h~~~v~~v~~~p-~~~~l~s~s~d~~-v~iwd 254 (340)
T 1got_B 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR---QTFTGHESDINAICFFP-NGNAFATGSDDAT-CRLFD 254 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE---EEECCCSSCEEEEEECT-TSSEEEEEETTSC-EEEEE
T ss_pred EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeE---EEEcCCcCCEEEEEEcC-CCCEEEEEcCCCc-EEEEE
Confidence 99999999999999 9999999999999999999988743 33356777999999999 9999999999999 99999
Q ss_pred CCCCCCCeeeec--ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC
Q 035558 160 IRFPTLPVVELQ--RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP 237 (253)
Q Consensus 160 ~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 237 (253)
++.... +..+. .+...|.+++|+|++ ++|++|+.||.|++||+.+.... ..+.+|..+|.+++|+|++.
T Consensus 255 ~~~~~~-~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~~-------~~~~~h~~~v~~~~~s~dg~ 325 (340)
T 1got_B 255 LRADQE-LMTYSHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKADRA-------GVLAGHDNRVSCLGVTDDGM 325 (340)
T ss_dssp TTTTEE-EEEECCTTCCSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEE-------EEEECCSSCEEEEEECTTSS
T ss_pred CCCCcE-EEEEccCCcccceEEEEECCCC-CEEEEECCCCeEEEEEcccCcEe-------eEeecCCCcEEEEEEcCCCC
Confidence 987553 44443 233579999999999 69999999999999999886643 36778999999999999999
Q ss_pred ceEEEEcCCcEEEEE
Q 035558 238 DWVAIAFSTKLQILR 252 (253)
Q Consensus 238 ~~~~~~~~~~i~vw~ 252 (253)
.+++++.|+.|++|+
T Consensus 326 ~l~s~s~D~~i~iWd 340 (340)
T 1got_B 326 AVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEETTSCEEEEC
T ss_pred EEEEEcCCccEEecC
Confidence 999999999999996
No 12
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.2e-41 Score=259.98 Aligned_cols=240 Identities=18% Similarity=0.286 Sum_probs=195.3
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCC-CCCEEEEEeCCCeEEEEeccCce--e
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEA-EPRRIGTSSIDTTCTIWDIEREA--V 77 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~--~ 77 (253)
+++++|++++ | +|++||+..+ .......+++|. .+|.+++|+|+ ++++|++|+.|++|++||+++++ .
T Consensus 23 ~~g~~lasgs~D~~v~lwd~~~~--~~~~~~~l~gH~-----~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~ 95 (316)
T 3bg1_A 23 YYGTRLATCSSDRSVKIFDVRNG--GQILIADLRGHE-----GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEK 95 (316)
T ss_dssp GGGCEEEEEETTTEEEEEEEETT--EEEEEEEEECCS-----SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCE
T ss_pred CCCCEEEEEeCCCeEEEEEecCC--CcEEEEEEcCCC-----ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceE
Confidence 3567888887 5 9999999874 123567789999 89999999844 58999999999999999998874 5
Q ss_pred eeeeecccccEEEEEec-C--CCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC-------------
Q 035558 78 DTQLIAHDKEVYDIAWG-G--VGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD------------- 141 (253)
Q Consensus 78 ~~~~~~~~~~v~~~~~~-~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------- 141 (253)
...+.+|...|.+++|+ + +.+|++++.|++|++||++.............|...+.+++|+|..
T Consensus 96 ~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~ 175 (316)
T 3bg1_A 96 SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQK 175 (316)
T ss_dssp EEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCC
T ss_pred EEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccC
Confidence 56677899999999999 5 7899999999999999998765333334445677789999999831
Q ss_pred ---CCEEEEEEeCCCeEEEEECCCCC--CCeeeecccccceeEEEEecCC---CCeEEEecCCCcEEEEeccCCCCCCCC
Q 035558 142 ---PRYMATIIMDSAKVVVLDIRFPT--LPVVELQRHQASVNAIAWAPHS---SCHICTAGDDSQALIWDLSSMGQPVEG 213 (253)
Q Consensus 142 ---~~~l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~ 213 (253)
+.+|++++.|+. |++||++... .++..+.+|...|.+++|+|++ ..+|++++.|++|++|+++......
T Consensus 176 ~~~~~~l~sgs~D~~-v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~-- 252 (316)
T 3bg1_A 176 PNYIKRFASGGCDNL-IKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNT-- 252 (316)
T ss_dssp CCCCCBEECCBTTSB-CCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCC--
T ss_pred ccccceEEEecCCCe-EEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccc--
Confidence 468999999998 9999997543 2466788999999999999985 2589999999999999998742110
Q ss_pred CCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 214 GLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 214 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
........|...|.+++|+|+++.+++++.|+.|++|++
T Consensus 253 -~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 253 -WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp -CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred -hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence 011245678899999999999999999999999999973
No 13
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.1e-40 Score=259.11 Aligned_cols=232 Identities=16% Similarity=0.162 Sum_probs=183.3
Q ss_pred CCCceEEeecC-cEEEEEccCC-------ccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC
Q 035558 3 QKPDLLATSSD-FLRVWRISDE-------DRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER 74 (253)
Q Consensus 3 ~~~~~l~~~~~-~v~iw~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 74 (253)
++|.+|+++++ ++|+||.... ............+. ..|.+++|+ ++ +.|++|+.||+|++||+++
T Consensus 40 ~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~s-~d-~~l~~~s~dg~v~lWd~~~ 112 (344)
T 4gqb_B 40 SDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTE-----AGVADLTWV-GE-RGILVASDSGAVELWELDE 112 (344)
T ss_dssp TTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEES-----SCEEEEEEE-TT-TEEEEEETTSEEEEEEECT
T ss_pred CCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccC-----CCEEEEEEe-CC-CeEEEEECCCEEEEEeccC
Confidence 46788999888 8898874321 00001111112233 689999999 55 5788999999999999998
Q ss_pred ceeeee----eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE
Q 035558 75 EAVDTQ----LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII 149 (253)
Q Consensus 75 ~~~~~~----~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 149 (253)
++.... +.+|...|++++|+ ++++|++|+.|++|++||+++++. +.....|...|.+++|+|.+..+|++++
T Consensus 113 ~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~---~~~~~~h~~~V~~~~~~~~~~~~l~s~s 189 (344)
T 4gqb_B 113 NETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV---LSSYRAHAAQVTCVAASPHKDSVFLSCS 189 (344)
T ss_dssp TSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE---EEEECCCSSCEEEEEECSSCTTEEEEEE
T ss_pred CCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE---EEEEcCcCCceEEEEecCCCCCceeeec
Confidence 875443 34899999999999 999999999999999999998864 4444577889999999995557889999
Q ss_pred eCCCeEEEEECCCCCCCeeeec--ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCce
Q 035558 150 MDSAKVVVLDIRFPTLPVVELQ--RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEI 227 (253)
Q Consensus 150 ~~~~~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v 227 (253)
.|+. |++||+++.+. ...+. .|...+.+++|+|++.++|++|+.||+|++||+++++... .+.+|...|
T Consensus 190 ~D~~-v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~-------~~~~h~~~v 260 (344)
T 4gqb_B 190 EDNR-ILLWDTRCPKP-ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVL-------SSAVHSQCV 260 (344)
T ss_dssp TTSC-EEEEETTSSSC-EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCE-------EEECCSSCE
T ss_pred cccc-cccccccccce-eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEE-------EEcCCCCCE
Confidence 9998 99999998664 55553 4556799999999776789999999999999999876543 778899999
Q ss_pred eEEEEcCCCC-ceEEEEcCCcEEEEEC
Q 035558 228 EQLQWSSSQP-DWVAIAFSTKLQILRV 253 (253)
Q Consensus 228 ~~~~~~~~~~-~~~~~~~~~~i~vw~l 253 (253)
++++|+|++. ++++++.|+.|+||++
T Consensus 261 ~~v~fsp~g~~~lasgs~D~~i~vwd~ 287 (344)
T 4gqb_B 261 TGLVFSPHSVPFLASLSEDCSLAVLDS 287 (344)
T ss_dssp EEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred EEEEEccCCCeEEEEEeCCCeEEEEEC
Confidence 9999999985 5678999999999985
No 14
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.3e-39 Score=254.56 Aligned_cols=229 Identities=15% Similarity=0.213 Sum_probs=194.9
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc----e
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE----A 76 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~ 76 (253)
+++.+|++++ | .|++||+.++ +....+..|. ..|.+++|+ +++++|++|+.|+.|++|++.+. +
T Consensus 65 ~d~~~l~s~s~Dg~v~iWd~~~~----~~~~~~~~~~-----~~v~~~~~s-~~~~~l~s~~~d~~v~iw~~~~~~~~~~ 134 (340)
T 1got_B 65 TDSRLLLSASQDGKLIIWDSYTT----NKVHAIPLRS-----SWVMTCAYA-PSGNYVACGGLDNICSIYNLKTREGNVR 134 (340)
T ss_dssp TTSSEEEEEETTTEEEEEETTTC----CEEEEEECSS-----SCEEEEEEC-TTSSEEEEEETTCEEEEEETTTCSBSCE
T ss_pred CCCCEEEEEeCCCcEEEEECCCC----CcceEeecCC-----ccEEEEEEC-CCCCEEEEEeCCCeEEEEECccCCCcce
Confidence 4567888877 5 9999999887 7778888888 899999999 89999999999999999999765 3
Q ss_pred eeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558 77 VDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV 156 (253)
Q Consensus 77 ~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~ 156 (253)
....+.+|...|.++.|+++..+++++.|++|++||+++++.. .....|...|.+++|+| ++.++++++.|+. |+
T Consensus 135 ~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~---~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~-v~ 209 (340)
T 1got_B 135 VSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT---TTFTGHTGDVMSLSLAP-DTRLFVSGACDAS-AK 209 (340)
T ss_dssp EEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEE---EEECCCSSCEEEEEECT-TSSEEEEEETTSC-EE
T ss_pred eEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEE---EEEcCCCCceEEEEECC-CCCEEEEEeCCCc-EE
Confidence 5566789999999999994445899999999999999988643 33456777999999999 8999999999999 99
Q ss_pred EEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC
Q 035558 157 VLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ 236 (253)
Q Consensus 157 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 236 (253)
+||+++.. ++..+.+|...|++++|+|++ .+|++|+.||+|++||++...... ......+...|.+++|+|++
T Consensus 210 ~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~-----~~~~~~~~~~v~~~~~s~~g 282 (340)
T 1got_B 210 LWDVREGM-CRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQELM-----TYSHDNIICGITSVSFSKSG 282 (340)
T ss_dssp EEETTTCS-EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEE-----EECCTTCCSCEEEEEECTTS
T ss_pred EEECCCCe-eEEEEcCCcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcEEE-----EEccCCcccceEEEEECCCC
Confidence 99999865 478899999999999999999 699999999999999998765322 01111234579999999999
Q ss_pred CceEEEEcCCcEEEEEC
Q 035558 237 PDWVAIAFSTKLQILRV 253 (253)
Q Consensus 237 ~~~~~~~~~~~i~vw~l 253 (253)
+.+++++.|+.|++|++
T Consensus 283 ~~l~~g~~d~~i~vwd~ 299 (340)
T 1got_B 283 RLLLAGYDDFNCNVWDA 299 (340)
T ss_dssp SEEEEEETTSEEEEEET
T ss_pred CEEEEECCCCeEEEEEc
Confidence 99999999999999985
No 15
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.4e-39 Score=250.66 Aligned_cols=229 Identities=18% Similarity=0.252 Sum_probs=195.6
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-eeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-AVDT 79 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~ 79 (253)
+++++|++++ | .|++||+.++ +.+..+.+|. ..|.+++|+ |++.+|++|+.|++|++||++++ ....
T Consensus 65 ~~~~~l~s~s~d~~i~vwd~~~~----~~~~~~~~h~-----~~v~~~~~~-~~~~~l~sgs~D~~v~lWd~~~~~~~~~ 134 (304)
T 2ynn_A 65 ARKNWIIVGSDDFRIRVFNYNTG----EKVVDFEAHP-----DYIRSIAVH-PTKPYVLSGSDDLTVKLWNWENNWALEQ 134 (304)
T ss_dssp GGGTEEEEEETTSEEEEEETTTC----CEEEEEECCS-----SCEEEEEEC-SSSSEEEEEETTSCEEEEEGGGTTEEEE
T ss_pred CCCCEEEEECCCCEEEEEECCCC----cEEEEEeCCC-----CcEEEEEEc-CCCCEEEEECCCCeEEEEECCCCcchhh
Confidence 3566777777 5 9999999987 7888999999 899999999 88999999999999999999877 4566
Q ss_pred eeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC-CCCEEEEEEeCCCeEE
Q 035558 80 QLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ-DPRYMATIIMDSAKVV 156 (253)
Q Consensus 80 ~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~~~i~ 156 (253)
.+.+|...|.+++|+ ++..|++|+.|++|++||+++......+. ..+...+..+.|+|. ++.+|++++.|+. |+
T Consensus 135 ~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~s~D~~-i~ 211 (304)
T 2ynn_A 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLT-IK 211 (304)
T ss_dssp EECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE--CCCTTCEEEEEECCSTTCCEEEEEETTSE-EE
T ss_pred hhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceec--cCCcCcEEEEEEEEcCCCCEEEEEcCCCe-EE
Confidence 788999999999999 57899999999999999998876543333 244458899999873 5679999999998 99
Q ss_pred EEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC
Q 035558 157 VLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ 236 (253)
Q Consensus 157 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 236 (253)
+||+++.. ++..+.+|...|.+++|+|++ .+|++|+.||+|++||+++.+... .+..|...+.+++|+|++
T Consensus 212 iWd~~~~~-~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~Dg~i~iWd~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 282 (304)
T 2ynn_A 212 IWDYQTKS-CVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKVEK-------TLNVGLERSWCIATHPTG 282 (304)
T ss_dssp EEETTTTE-EEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEE-------EECCSSSSEEEEEECTTC
T ss_pred EEeCCCCc-cceeeCCCCCCEEEEEECCCC-CEEEEEcCCCeEEEEECCCCceee-------eccCCCccEEEEEECCCC
Confidence 99999865 488899999999999999999 599999999999999999876443 566788999999999988
Q ss_pred Cc-eEEEEcCCcEEEEEC
Q 035558 237 PD-WVAIAFSTKLQILRV 253 (253)
Q Consensus 237 ~~-~~~~~~~~~i~vw~l 253 (253)
.. +++++.++.+.+|++
T Consensus 283 ~~~~~asg~~~g~~~~~~ 300 (304)
T 2ynn_A 283 RKNYIASGFDNGFTVLSL 300 (304)
T ss_dssp GGGCEEEEETTEEEEEEC
T ss_pred CceEEEEecCCceEEEEe
Confidence 64 477778888888875
No 16
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.7e-39 Score=250.65 Aligned_cols=231 Identities=18% Similarity=0.331 Sum_probs=193.7
Q ss_pred CCCCCceEEeec-C-cEEEEEccCCccc-cceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee
Q 035558 1 ECQKPDLLATSS-D-FLRVWRISDEDRR-VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV 77 (253)
Q Consensus 1 sp~~~~~l~~~~-~-~v~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 77 (253)
+|.++++|++++ | +|++|++...... ..+...+++|. ..|.+++|+ +++++|++|+.|++|++||+++++.
T Consensus 26 ~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~s-~dg~~l~s~s~D~~v~~wd~~~~~~ 99 (319)
T 3frx_A 26 SAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS-----HIVQDCTLT-ADGAYALSASWDKTLRLWDVATGET 99 (319)
T ss_dssp CSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCS-----SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEE
T ss_pred cCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCc-----ccEEEEEEC-CCCCEEEEEeCCCEEEEEECCCCCe
Confidence 366778888888 5 9999999753111 24567889999 899999999 8999999999999999999999999
Q ss_pred eeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC-----CCCEEEEEEeC
Q 035558 78 DTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ-----DPRYMATIIMD 151 (253)
Q Consensus 78 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~l~~~~~~ 151 (253)
+..+.+|...|.+++|+ ++.+|++++.|++|++||++... +.....|...+.+++|.|. ++..+++++.|
T Consensus 100 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d 175 (319)
T 3frx_A 100 YQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC----LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175 (319)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCE----EEEECCCSSCEEEEEECCC------CCEEEEEETT
T ss_pred eEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe----EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCC
Confidence 99999999999999999 99999999999999999997542 3334467779999999983 24489999999
Q ss_pred CCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEE
Q 035558 152 SAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQ 231 (253)
Q Consensus 152 ~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 231 (253)
+. |++||+++.. ....+.+|...|.+++|+|++ ++|++++.||.|++||+.+.+.. ....+..+|.+++
T Consensus 176 ~~-i~~wd~~~~~-~~~~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~~--------~~~~~~~~v~~~~ 244 (319)
T 3frx_A 176 KM-VKAWNLNQFQ-IEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKAM--------YTLSAQDEVFSLA 244 (319)
T ss_dssp SC-EEEEETTTTE-EEEEECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEE--------EEEECCSCEEEEE
T ss_pred CE-EEEEECCcch-hheeecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEE--------EEecCCCcEEEEE
Confidence 98 9999998755 367788999999999999999 69999999999999999886533 2333567899999
Q ss_pred EcCCCCceEEEEcCCcEEEEEC
Q 035558 232 WSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 232 ~~~~~~~~~~~~~~~~i~vw~l 253 (253)
|+|++. +++++.++.+++|++
T Consensus 245 ~sp~~~-~la~~~~~~i~v~~~ 265 (319)
T 3frx_A 245 FSPNRY-WLAAATATGIKVFSL 265 (319)
T ss_dssp ECSSSS-EEEEEETTEEEEEEE
T ss_pred EcCCCC-EEEEEcCCCcEEEEe
Confidence 999997 555566777999973
No 17
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=8.3e-39 Score=251.28 Aligned_cols=230 Identities=14% Similarity=0.206 Sum_probs=195.3
Q ss_pred CCCceEEeec-C-cEEEEEccCCc--cccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDED--RRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD 78 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 78 (253)
+++.+|++++ + .+++|++.... ........+.+|. ..|.+++|+ +++..|++++.|++|++||+++++.+
T Consensus 116 p~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~-~~~~~l~t~s~D~~v~lwd~~~~~~~ 189 (354)
T 2pbi_B 116 PSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHT-----NYLSACSFT-NSDMQILTASGDGTCALWDVESGQLL 189 (354)
T ss_dssp TTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECS-----SCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccC-----CcEEEEEEe-CCCCEEEEEeCCCcEEEEeCCCCeEE
Confidence 4567788877 5 99999986531 1124456677888 899999999 88899999999999999999999999
Q ss_pred eeeecccccEEEEEec---CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558 79 TQLIAHDKEVYDIAWG---GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV 155 (253)
Q Consensus 79 ~~~~~~~~~v~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i 155 (253)
..+.+|...|.+++|+ ++++|++|+.||+|++||+++++... ....|...|.+++|+| ++.+|++++.|+. |
T Consensus 190 ~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~---~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~-v 264 (354)
T 2pbi_B 190 QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ---AFETHESDVNSVRYYP-SGDAFASGSDDAT-C 264 (354)
T ss_dssp EEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECT-TSSEEEEEETTSC-E
T ss_pred EEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEE---EecCCCCCeEEEEEeC-CCCEEEEEeCCCe-E
Confidence 9999999999999997 46899999999999999999987433 3356777999999999 8999999999999 9
Q ss_pred EEEECCCCCCCeeeecc--cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEc
Q 035558 156 VVLDIRFPTLPVVELQR--HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWS 233 (253)
Q Consensus 156 ~~~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 233 (253)
++||++.... +..+.. +...+.+++|+|++ .+|++|+.|+.|++||+.++... ..+.+|..+|++++|+
T Consensus 265 ~lwd~~~~~~-~~~~~~~~~~~~~~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~~-------~~l~~h~~~v~~l~~s 335 (354)
T 2pbi_B 265 RLYDLRADRE-VAIYSKESIIFGASSVDFSLSG-RLLFAGYNDYTINVWDVLKGSRV-------SILFGHENRVSTLRVS 335 (354)
T ss_dssp EEEETTTTEE-EEEECCTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEE-------EEECCCSSCEEEEEEC
T ss_pred EEEECCCCcE-EEEEcCCCcccceeEEEEeCCC-CEEEEEECCCcEEEEECCCCceE-------EEEECCCCcEEEEEEC
Confidence 9999987543 444433 33478999999999 69999999999999999887643 3677899999999999
Q ss_pred CCCCceEEEEcCCcEEEEE
Q 035558 234 SSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 234 ~~~~~~~~~~~~~~i~vw~ 252 (253)
|+++++++++.|+.|++|+
T Consensus 336 pdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 336 PDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEcCCCCEEecC
Confidence 9999999999999999995
No 18
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.9e-39 Score=255.57 Aligned_cols=239 Identities=20% Similarity=0.277 Sum_probs=193.3
Q ss_pred CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCc-------------cccCCeeEEEecCCCCCEEEEEeCCCeEE
Q 035558 3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNS-------------EYCGPLTSFDWNEAEPRRIGTSSIDTTCT 68 (253)
Q Consensus 3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 68 (253)
+++++||++++ .+++|++..+ +....+..|... .....|.+++|+ +++++|++|+.|+.|+
T Consensus 74 pdg~~la~g~~~~v~i~~~~~g----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~dg~~l~s~~~d~~i~ 148 (393)
T 1erj_A 74 NDGEYLATGCNKTTQVYRVSDG----SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS-PDGKFLATGAEDRLIR 148 (393)
T ss_dssp TTSSEEEEECBSCEEEEETTTC----CEEEEECC-----------------CCCCBEEEEEEC-TTSSEEEEEETTSCEE
T ss_pred CCCCEEEEEcCCcEEEEEecCC----CEEEEecCccccccccccccccccCCCceeEEEEEEC-CCCCEEEEEcCCCeEE
Confidence 46789999888 9999999887 556666554311 011348999999 8999999999999999
Q ss_pred EEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEE
Q 035558 69 IWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 147 (253)
Q Consensus 69 vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 147 (253)
+||+++++.+..+.+|...|.+++|+ ++++|++++.|++|++||+++++....+. +...+.+++|+|.++.++++
T Consensus 149 iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~ 224 (393)
T 1erj_A 149 IWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS----IEDGVTTVAVSPGDGKYIAA 224 (393)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECSTTCCEEEE
T ss_pred EEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE----cCCCcEEEEEECCCCCEEEE
Confidence 99999999999999999999999999 99999999999999999999886443332 33479999999988999999
Q ss_pred EEeCCCeEEEEECCCCCCCeeee-------cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCC-----CC
Q 035558 148 IIMDSAKVVVLDIRFPTLPVVEL-------QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEG-----GL 215 (253)
Q Consensus 148 ~~~~~~~i~~~d~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~ 215 (253)
++.|+. |++||+++... +..+ .+|...|.+++|+|++ ++|++|+.|+.|++||++........ ..
T Consensus 225 ~s~d~~-v~iwd~~~~~~-~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~ 301 (393)
T 1erj_A 225 GSLDRA-VRVWDSETGFL-VERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 301 (393)
T ss_dssp EETTSC-EEEEETTTCCE-EEEEC------CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEEC---------------C
T ss_pred EcCCCc-EEEEECCCCcE-EEeecccccCCCCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCCcccccCCCCCc
Confidence 999999 99999987653 4444 5788999999999999 69999999999999999875432100 01
Q ss_pred CCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 216 DPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 216 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
......+|...|.+++|+|+++++++++.|+.|++|++
T Consensus 302 ~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~ 339 (393)
T 1erj_A 302 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 339 (393)
T ss_dssp EEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred ceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 12355689999999999999999999999999999985
No 19
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=8.6e-39 Score=254.62 Aligned_cols=230 Identities=18% Similarity=0.251 Sum_probs=195.1
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
+++.+|++++ | .|++||+.++ +....+.+|. ..|.+++|+ +++++|++|+.|++|++||+++++....
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~----~~~~~~~~h~-----~~v~~~~~~-p~~~~l~s~s~d~~v~iwd~~~~~~~~~ 202 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENR----KIVMILQGHE-----QDIYSLDYF-PSGDKLVSGSGDRTVRIWDLRTGQCSLT 202 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTT----EEEEEECCCS-----SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCC----cEEEEEccCC-----CCEEEEEEc-CCCCEEEEecCCCcEEEEECCCCeeEEE
Confidence 3667888877 5 9999999987 7888899999 899999999 8899999999999999999999988777
Q ss_pred eecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeee----ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCe
Q 035558 81 LIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIY----ESSEPDTPLVRLGWNKQDPRYMATIIMDSAK 154 (253)
Q Consensus 81 ~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~ 154 (253)
+. +...+.+++|+ ++++|++++.|+.|++||++++.....+. ....|...|.+++|+| ++++|++++.|+.
T Consensus 203 ~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~~- 279 (393)
T 1erj_A 203 LS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRS- 279 (393)
T ss_dssp EE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSE-
T ss_pred EE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCCE-
Confidence 66 66789999998 78899999999999999999887544332 1145677999999999 9999999999998
Q ss_pred EEEEECCCCC-----------CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC
Q 035558 155 VVVLDIRFPT-----------LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA 223 (253)
Q Consensus 155 i~~~d~~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 223 (253)
|++||+++.. .+...+.+|...|.+++|+|++ .+|++|+.|+.|++||+++++.. ..+.+|
T Consensus 280 v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~iwd~~~~~~~-------~~l~~h 351 (393)
T 1erj_A 280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGNPL-------LMLQGH 351 (393)
T ss_dssp EEEEEC---------------CEEEEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTTCCEE-------EEEECC
T ss_pred EEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCeEE-------EEECCC
Confidence 9999997642 1245677899999999999999 69999999999999999987643 367789
Q ss_pred CCceeEEEEcC------CCCceEEEEcCCcEEEEEC
Q 035558 224 GAEIEQLQWSS------SQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 224 ~~~v~~~~~~~------~~~~~~~~~~~~~i~vw~l 253 (253)
...|.+++|++ +++.+++++.|+.|++|++
T Consensus 352 ~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 352 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred CCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence 99999999986 5677889999999999984
No 20
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-39 Score=249.70 Aligned_cols=235 Identities=19% Similarity=0.298 Sum_probs=184.1
Q ss_pred eEEeec-C-cEEEEEccCCccccceeeee-cC-CCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC-------c
Q 035558 7 LLATSS-D-FLRVWRISDEDRRVELKSLL-NG-NKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER-------E 75 (253)
Q Consensus 7 ~l~~~~-~-~v~iw~~~~~~~~~~~~~~~-~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-------~ 75 (253)
+|++++ | .|++|++..+ .......+ .+ |. ..|.+++|+ |++++|++|+.|++|++||++. .
T Consensus 26 ~las~~~D~~i~lw~~~~~--~~~~~~~~~~~~h~-----~~v~~v~~s-p~~~~las~s~D~~v~iw~~~~~~~~~~~~ 97 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYD--DFTLIDVLDETAHK-----KAIRSVAWR-PHTSLLAAGSFDSTVSIWAKEESADRTFEM 97 (330)
T ss_dssp EEEEEESSSCEEEEECSSS--CCEEEEEECTTCCC-----SCEEEEEEC-TTSSEEEEEETTSCEEEEEC-------CCC
T ss_pred EEEEEcCCCEEEEEEecCC--CeEEEEEEecCCcc-----CCEEEEEEC-CCCCEEEEEeCCCcEEEEEcccCcCccccc
Confidence 788877 5 9999999863 12334444 34 77 899999999 8899999999999999999853 3
Q ss_pred eeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCC-CCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC
Q 035558 76 AVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDK-EHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA 153 (253)
Q Consensus 76 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 153 (253)
+.+..+.+|...|.+++|+ ++++|++|+.|++|++||++.. .....+.....|...|.+++|+| ++.+|++++.|+.
T Consensus 98 ~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~ 176 (330)
T 2hes_X 98 DLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDT 176 (330)
T ss_dssp EEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSC
T ss_pred eeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCe
Confidence 4566788999999999999 9999999999999999999543 33334444567778999999999 8999999999999
Q ss_pred eEEEEECCCCC-CCeeeecccccceeEEEEecC--CCCeEEEecCCCcEEEEeccCCCCCCCCC-CCCeeec-cCCCcee
Q 035558 154 KVVVLDIRFPT-LPVVELQRHQASVNAIAWAPH--SSCHICTAGDDSQALIWDLSSMGQPVEGG-LDPILAY-TAGAEIE 228 (253)
Q Consensus 154 ~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~-~~~~~v~ 228 (253)
|++||.+... .++..+.+|...|.+++|+|+ + .+|++|+.|++|++||++......... .....+. .|...|.
T Consensus 177 -i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 254 (330)
T 2hes_X 177 -VRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGV-FRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVY 254 (330)
T ss_dssp -EEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSS-CEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEE
T ss_pred -EEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCe-eEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceE
Confidence 9999987643 357788999999999999998 5 589999999999999997653211000 0011222 3899999
Q ss_pred EEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 229 QLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
+++|++++ .+++++.|+.|++|++
T Consensus 255 ~v~~s~~~-~l~s~~~dg~v~iw~~ 278 (330)
T 2hes_X 255 NVAWGFNG-LIASVGADGVLAVYEE 278 (330)
T ss_dssp EEEECTTS-CEEEEETTSCEEEEEE
T ss_pred EEEEcCCC-EEEEEeCCCEEEEEEc
Confidence 99999776 6899999999999973
No 21
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.8e-39 Score=256.30 Aligned_cols=237 Identities=19% Similarity=0.267 Sum_probs=193.2
Q ss_pred CCCceEEeec-C-cEEEEEccCCc---cccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDED---RRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV 77 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 77 (253)
+++.+|++++ | .+++|++.... ........+.+|. ..|.++.|+|..+..|++|+.|++|++||+++++.
T Consensus 118 ~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~-----~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~ 192 (380)
T 3iz6_a 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHK-----GYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR 192 (380)
T ss_dssp TTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCS-----SCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE
T ss_pred CCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCC-----cceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE
Confidence 4677888887 5 99999997531 1234556788898 88999999966677899999999999999999987
Q ss_pred eeee-----ecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558 78 DTQL-----IAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM 150 (253)
Q Consensus 78 ~~~~-----~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 150 (253)
+..+ .+|...|.+++|+ ++++|++|+.|++|++||++.... .+.....|...|.+++|+| ++.+|++++.
T Consensus 193 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~--~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~ 269 (380)
T 3iz6_a 193 ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR--AVRTYHGHEGDINSVKFFP-DGQRFGTGSD 269 (380)
T ss_dssp EEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC--CCEEECCCSSCCCEEEECT-TSSEEEEECS
T ss_pred EEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc--ceEEECCcCCCeEEEEEec-CCCeEEEEcC
Confidence 7766 5789999999997 789999999999999999985432 2333456778999999999 9999999999
Q ss_pred CCCeEEEEECCCCCCCeeeeccc-------ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC
Q 035558 151 DSAKVVVLDIRFPTLPVVELQRH-------QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA 223 (253)
Q Consensus 151 ~~~~i~~~d~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 223 (253)
|+. |++||++++.. +..+..+ ...|++++|+|++ .+|++|+.||.|++||+...+... .......+|
T Consensus 270 D~~-i~lwd~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~---~~~~~~~~h 343 (380)
T 3iz6_a 270 DGT-CRLFDMRTGHQ-LQVYNREPDRNDNELPIVTSVAFSISG-RLLFAGYSNGDCYVWDTLLAEMVL---NLGTLQNSH 343 (380)
T ss_dssp SSC-EEEEETTTTEE-EEEECCCCSSSCCSSCSCSEEEECSSS-SEEEEECTTSCEEEEETTTCCEEE---EECCSCSSC
T ss_pred CCe-EEEEECCCCcE-EEEecccccccccccCceEEEEECCCC-CEEEEEECCCCEEEEECCCCceEE---EEecccCCC
Confidence 999 99999998653 4444432 2348999999999 699999999999999998766432 000112579
Q ss_pred CCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 224 GAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 224 ~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
...|++++|+|+++.+++++.|+.|++|++
T Consensus 344 ~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 344 EGRISCLGLSSDGSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp CCCCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred CCceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence 999999999999999999999999999985
No 22
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.3e-39 Score=258.27 Aligned_cols=238 Identities=15% Similarity=0.207 Sum_probs=197.3
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce-----
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA----- 76 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----- 76 (253)
++.+|++|+ | +|++||+.++ +....+..|. ..|.+++|+ |++++|++|+.|+.+++||+.+..
T Consensus 77 ~~~~l~s~s~D~~v~iWd~~~~----~~~~~~~~h~-----~~v~~~~~s-~~g~~las~~~d~~v~iw~~~~~~~~~~~ 146 (380)
T 3iz6_a 77 EKNWIVSASQDGRLIVWNALTS----QKTHAIKLHC-----PWVMECAFA-PNGQSVACGGLDSACSIFNLSSQADRDGN 146 (380)
T ss_dssp TSSCEEEEETTSEEEEEETTTT----EEEEEEECCC-----TTCCCCEEC-TTSSEEEECCSSSCCEEEECCCCSSCCCS
T ss_pred CCCEEEEEeCCCeEEEEECCCC----ccceEEecCC-----CCEEEEEEC-CCCCEEEEeeCCCcEEEEECCCCccccCC
Confidence 567788877 5 9999999887 7788899998 889999999 899999999999999999987532
Q ss_pred --eeeeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeec--cCCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558 77 --VDTQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYE--SSEPDTPLVRLGWNKQDPRYMATIIM 150 (253)
Q Consensus 77 --~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~ 150 (253)
....+.+|.+.|.++.|. ++..|++|+.|++|++||+++++....+.. ...|...|.+++|+|.+++++++++.
T Consensus 147 ~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~ 226 (380)
T 3iz6_a 147 MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSC 226 (380)
T ss_dssp STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEET
T ss_pred ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEEC
Confidence 345677899999999999 466899999999999999999875544321 24577799999998878899999999
Q ss_pred CCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEE
Q 035558 151 DSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQL 230 (253)
Q Consensus 151 ~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~ 230 (253)
|+. |++||++....++..+.+|...|++++|+|++ .+|++|+.||+|++||++++.........+.....+...|+++
T Consensus 227 D~~-v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~ 304 (380)
T 3iz6_a 227 DTT-VRLWDLRITSRAVRTYHGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSV 304 (380)
T ss_dssp TSC-EEEEETTTTCCCCEEECCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEE
T ss_pred CCe-EEEEECCCCCcceEEECCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEE
Confidence 999 99999997666688999999999999999999 6999999999999999998754320000011111233458999
Q ss_pred EEcCCCCceEEEEcCCcEEEEEC
Q 035558 231 QWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 231 ~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
+|+|+++.+++++.|+.|++|++
T Consensus 305 ~~s~~g~~l~~g~~dg~i~vwd~ 327 (380)
T 3iz6_a 305 AFSISGRLLFAGYSNGDCYVWDT 327 (380)
T ss_dssp EECSSSSEEEEECTTSCEEEEET
T ss_pred EECCCCCEEEEEECCCCEEEEEC
Confidence 99999999999999999999984
No 23
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.4e-38 Score=245.46 Aligned_cols=239 Identities=17% Similarity=0.340 Sum_probs=192.3
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---e
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---V 77 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~ 77 (253)
+++.+|++++ | .+++|++..+ ..+....+.+|. ..|.+++|+ |++++|++|+.|+.|++||+..+. .
T Consensus 71 p~g~~l~s~s~D~~v~iw~~~~~--~~~~~~~~~~h~-----~~v~~v~~s-p~~~~l~s~s~D~~v~iwd~~~~~~~~~ 142 (345)
T 3fm0_A 71 PCGNYLASASFDATTCIWKKNQD--DFECVTTLEGHE-----NEVKSVAWA-PSGNLLATCSRDKSVWVWEVDEEDEYEC 142 (345)
T ss_dssp TTSSEEEEEETTSCEEEEEECCC---EEEEEEECCCS-----SCEEEEEEC-TTSSEEEEEETTSCEEEEEECTTSCEEE
T ss_pred CCCCEEEEEECCCcEEEEEccCC--CeEEEEEccCCC-----CCceEEEEe-CCCCEEEEEECCCeEEEEECCCCCCeEE
Confidence 3567888877 5 9999999763 234677889998 899999999 899999999999999999998653 4
Q ss_pred eeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558 78 DTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV 156 (253)
Q Consensus 78 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~ 156 (253)
+..+.+|...|.+++|+ ++++|++++.|+.|++||+++.+.. .......|...|.+++|+| ++++|++++.|+. |+
T Consensus 143 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~-~~~~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~-v~ 219 (345)
T 3fm0_A 143 VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWV-CCATLEGHESTVWSLAFDP-SGQRLASCSDDRT-VR 219 (345)
T ss_dssp EEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECT-TSSEEEEEETTSC-EE
T ss_pred EEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEE-EEEEecCCCCceEEEEECC-CCCEEEEEeCCCe-EE
Confidence 56677899999999999 9999999999999999999876422 2334457778999999999 9999999999999 99
Q ss_pred EEECCCCCC--------------Ceeeecc-cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCC--Cee
Q 035558 157 VLDIRFPTL--------------PVVELQR-HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLD--PIL 219 (253)
Q Consensus 157 ~~d~~~~~~--------------~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~ 219 (253)
+||...... ++..+.+ |...|++++|+|++ ..|++++.|+.|++|+......+...... ...
T Consensus 220 iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 298 (345)
T 3fm0_A 220 IWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT-GALATACGDDAIRVFQEDPNSDPQQPTFSLTAHL 298 (345)
T ss_dssp EEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT-CCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEE
T ss_pred EeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCC-CEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeee
Confidence 999754321 1223333 88899999999999 59999999999999999865433200000 012
Q ss_pred eccCCCceeEEEEcCCCC-ceEEEEcCCcEEEEEC
Q 035558 220 AYTAGAEIEQLQWSSSQP-DWVAIAFSTKLQILRV 253 (253)
Q Consensus 220 ~~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~vw~l 253 (253)
..+|...|++++|+|+++ .+++++.|+.|++|++
T Consensus 299 ~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~ 333 (345)
T 3fm0_A 299 HQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKY 333 (345)
T ss_dssp TTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEE
T ss_pred cccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEe
Confidence 247899999999999985 6778999999999984
No 24
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.6e-37 Score=239.93 Aligned_cols=234 Identities=18% Similarity=0.266 Sum_probs=195.7
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
+++++|++++ + .|++|++..+ +....+.+|. ..|.+++|+ +++++|++|+.|+.|++||+++++.+..
T Consensus 33 ~~~~~l~s~~~dg~i~iw~~~~~----~~~~~~~~h~-----~~v~~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 102 (312)
T 4ery_A 33 PNGEWLASSSADKLIKIWGAYDG----KFEKTISGHK-----LGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT 102 (312)
T ss_dssp TTSSEEEEEETTSCEEEEETTTC----CEEEEECCCS-----SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCCCEEEEeeCCCeEEEEeCCCc----ccchhhccCC-----CceEEEEEc-CCCCEEEEECCCCEEEEEECCCCcEEEE
Confidence 3567777777 5 9999999887 7788889998 899999999 8999999999999999999999999999
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
+.+|...|.+++|+ ++++|++++.|+.|++||+++++... ....+..+|.+++|+| +++++++++.|+. |++||
T Consensus 103 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~-i~~wd 177 (312)
T 4ery_A 103 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNR-DGSLIVSSSYDGL-CRIWD 177 (312)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECT-TSSEEEEEETTSC-EEEEE
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE---EecCCCCcEEEEEEcC-CCCEEEEEeCCCc-EEEEE
Confidence 99999999999999 99999999999999999999887433 3345667999999999 8999999999998 99999
Q ss_pred CCCCCCCeeee-cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC---------------------------
Q 035558 160 IRFPTLPVVEL-QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV--------------------------- 211 (253)
Q Consensus 160 ~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--------------------------- 211 (253)
+++.+. +..+ ..+...+..++|+|++ ++|++++.|+.|++||+++++...
T Consensus 178 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 255 (312)
T 4ery_A 178 TASGQC-LKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255 (312)
T ss_dssp TTTCCE-EEEECCSSCCCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEEC
T ss_pred CCCCce-eeEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEE
Confidence 998654 4443 4566789999999998 699999999999999987643100
Q ss_pred -----------CCCCCCeeeccCCCceeEEEEcCCCCceEEEE--cCCcEEEEEC
Q 035558 212 -----------EGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA--FSTKLQILRV 253 (253)
Q Consensus 212 -----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~i~vw~l 253 (253)
........+.+|...|.+++|+|+++.+++++ .|+.|++|+.
T Consensus 256 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 256 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp CTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred CCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 00011234557889999999999998777776 5899999984
No 25
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.2e-38 Score=250.57 Aligned_cols=233 Identities=15% Similarity=0.169 Sum_probs=180.2
Q ss_pred CCCceEEeec-------C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC
Q 035558 3 QKPDLLATSS-------D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER 74 (253)
Q Consensus 3 ~~~~~l~~~~-------~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 74 (253)
++|.+|++++ + .|++|+...+...........+|. ..|++++|+ +++. +++++.||+|++||+.+
T Consensus 52 pDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~-----~~V~~~~~s-~d~~-~l~~s~dg~v~lWd~~~ 124 (357)
T 4g56_B 52 RDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTE-----AGVTDVAWV-SEKG-ILVASDSGAVELWEILE 124 (357)
T ss_dssp SSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECS-----SCEEEEEEE-TTTE-EEEEETTSCEEEC----
T ss_pred CCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCC-----CCEEEEEEc-CCCC-EEEEECCCEEEEeeccc
Confidence 4778898887 3 578887766522233344455677 789999999 6665 55678899999999988
Q ss_pred ceeee----eeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE
Q 035558 75 EAVDT----QLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII 149 (253)
Q Consensus 75 ~~~~~----~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 149 (253)
++... ...+|...|++++|+ ++++|++++.|+.|++||+++++. +.....|...|.+++|+|....++++++
T Consensus 125 ~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~---~~~~~~h~~~v~~v~~s~~~~~~~~s~~ 201 (357)
T 4g56_B 125 KESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV---LKSYNAHSSEVNCVAACPGKDTIFLSCG 201 (357)
T ss_dssp ----CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEE---EEEECCCSSCEEEEEECTTCSSCEEEEE
T ss_pred cceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE---EEEEcCCCCCEEEEEEccCCCceeeeec
Confidence 76443 234799999999999 999999999999999999998863 3344567779999999995556899999
Q ss_pred eCCCeEEEEECCCCCCC-eeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCcee
Q 035558 150 MDSAKVVVLDIRFPTLP-VVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIE 228 (253)
Q Consensus 150 ~~~~~i~~~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 228 (253)
.|+. |++||+++.+.. ...+..|...+.+++|+|+++.+|++|+.|+.|++||+++++.. ..+.+|...|+
T Consensus 202 ~dg~-v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~-------~~~~~~~~~v~ 273 (357)
T 4g56_B 202 EDGR-ILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA-------QTSAVHSQNIT 273 (357)
T ss_dssp TTSC-EEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC-------EEECCCSSCEE
T ss_pred cCCc-eEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEe-------EEEeccceeEE
Confidence 9998 999999986632 22344577789999999987678999999999999999987644 36778999999
Q ss_pred EEEEcCCCC-ceEEEEcCCcEEEEEC
Q 035558 229 QLQWSSSQP-DWVAIAFSTKLQILRV 253 (253)
Q Consensus 229 ~~~~~~~~~-~~~~~~~~~~i~vw~l 253 (253)
+++|+|++. ++++++.|+.|+||++
T Consensus 274 ~l~~sp~~~~~lasgs~D~~i~iwd~ 299 (357)
T 4g56_B 274 GLAYSYHSSPFLASISEDCTVAVLDA 299 (357)
T ss_dssp EEEECSSSSCCEEEEETTSCEEEECT
T ss_pred EEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence 999999975 5667899999999985
No 26
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7.5e-38 Score=245.85 Aligned_cols=230 Identities=14% Similarity=0.168 Sum_probs=193.6
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-----
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE----- 75 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----- 75 (253)
+++.+|++++ | +|++||.... +....+..|. ..|.+++|+ |++..+++|+.|+.+++|++...
T Consensus 74 ~d~~~l~s~s~Dg~v~vWd~~~~----~~~~~~~~~~-----~~v~~~~~s-p~g~~lasg~~d~~i~v~~~~~~~~~~~ 143 (354)
T 2pbi_B 74 KDKRRIVSSSQDGKVIVWDSFTT----NKEHAVTMPC-----TWVMACAYA-PSGCAIACGGLDNKCSVYPLTFDKNENM 143 (354)
T ss_dssp TTSSEEEEEETTSEEEEEETTTC----CEEEEEECSS-----SCCCEEEEC-TTSSEEEEESTTSEEEEEECCCCTTCCS
T ss_pred CCCCEEEEEeCCCeEEEEECCCC----CcceEEecCC-----CCEEEEEEC-CCCCEEEEeeCCCCEEEEEEeccccccc
Confidence 3567888887 5 9999999886 6677777887 789999999 89999999999999999998643
Q ss_pred -eeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC-CCCEEEEEEeCC
Q 035558 76 -AVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ-DPRYMATIIMDS 152 (253)
Q Consensus 76 -~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~ 152 (253)
.....+.+|...|.+++|+ ++..|++++.|++|++||+++++.... ...|...|.+++|+|. ++++|++++.|+
T Consensus 144 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~---~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg 220 (354)
T 2pbi_B 144 AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQS---FHGHGADVLCLDLAPSETGNTFVSGGCDK 220 (354)
T ss_dssp GGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE---EECCSSCEEEEEECCCSSCCEEEEEETTS
T ss_pred cccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEE---EcCCCCCeEEEEEEeCCCCCEEEEEeCCC
Confidence 2445667899999999999 999999999999999999999874433 3466678999999884 468999999999
Q ss_pred CeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEE
Q 035558 153 AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQW 232 (253)
Q Consensus 153 ~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 232 (253)
. |++||+++.. ++..+..|...|++++|+|++ .+|++|+.|++|++||++...... ......+...+.+++|
T Consensus 221 ~-v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~~~~-----~~~~~~~~~~~~~~~~ 292 (354)
T 2pbi_B 221 K-AMVWDMRSGQ-CVQAFETHESDVNSVRYYPSG-DAFASGSDDATCRLYDLRADREVA-----IYSKESIIFGASSVDF 292 (354)
T ss_dssp C-EEEEETTTCC-EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEE-----EECCTTCCSCEEEEEE
T ss_pred e-EEEEECCCCc-EEEEecCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEE-----EEcCCCcccceeEEEE
Confidence 9 9999999865 488889999999999999999 699999999999999998764322 0111223457899999
Q ss_pred cCCCCceEEEEcCCcEEEEEC
Q 035558 233 SSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 233 ~~~~~~~~~~~~~~~i~vw~l 253 (253)
+|+++.+++++.|+.|++|++
T Consensus 293 s~~g~~l~~g~~d~~i~vwd~ 313 (354)
T 2pbi_B 293 SLSGRLLFAGYNDYTINVWDV 313 (354)
T ss_dssp CTTSSEEEEEETTSCEEEEET
T ss_pred eCCCCEEEEEECCCcEEEEEC
Confidence 999998999999999999985
No 27
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.3e-38 Score=264.41 Aligned_cols=232 Identities=13% Similarity=0.159 Sum_probs=193.0
Q ss_pred CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce--eee
Q 035558 3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA--VDT 79 (253)
Q Consensus 3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~ 79 (253)
+++++|+++++ .|++|++..+ +....+.+|. ..|++++|+ |++++|++|+.||+|+|||+.+++ ...
T Consensus 28 pdg~~l~~~~~~~v~l~~~~~~----~~~~~~~~h~-----~~v~~~~~s-pdg~~lasg~~d~~v~lWd~~~~~~~~~~ 97 (611)
T 1nr0_A 28 PAGDKIQYCNGTSVYTVPVGSL----TDTEIYTEHS-----HQTTVAKTS-PSGYYCASGDVHGNVRIWDTTQTTHILKT 97 (611)
T ss_dssp TTSSEEEEEETTEEEEEETTCS----SCCEEECCCS-----SCEEEEEEC-TTSSEEEEEETTSEEEEEESSSTTCCEEE
T ss_pred CCCCEEEeCCCCEEEEecCCCc----ccCeEecCCC-----CceEEEEEC-CCCcEEEEEeCCCCEEEeECCCCcceeeE
Confidence 46778888887 9999999876 7788899999 899999999 899999999999999999997543 455
Q ss_pred eeecccccEEEEEec-CCCeEEEEeCC----CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCC-CEEEEEEeCCC
Q 035558 80 QLIAHDKEVYDIAWG-GVGVFASVSAD----GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDP-RYMATIIMDSA 153 (253)
Q Consensus 80 ~~~~~~~~v~~~~~~-~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~ 153 (253)
.+.+|.++|.+++|+ +++.|++++.+ +.|++||.. +. .....+|...|.+++|+| ++ ..|++++.|+.
T Consensus 98 ~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~--~~---~~~l~gh~~~v~~v~f~p-~~~~~l~s~s~D~~ 171 (611)
T 1nr0_A 98 TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG--TS---NGNLTGQARAMNSVDFKP-SRPFRIISGSDDNT 171 (611)
T ss_dssp EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC--CB---CBCCCCCSSCEEEEEECS-SSSCEEEEEETTSC
T ss_pred eecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC--CC---cceecCCCCCceEEEECC-CCCeEEEEEeCCCe
Confidence 678899999999999 99999998875 478888853 32 223457778999999999 55 46999999998
Q ss_pred eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEc
Q 035558 154 KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWS 233 (253)
Q Consensus 154 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 233 (253)
|++||.+..+ ....+.+|...|++++|+|++ ++|++++.|++|++||+.+++.............+|...|.+++|+
T Consensus 172 -v~lwd~~~~~-~~~~l~~H~~~V~~v~fspdg-~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s 248 (611)
T 1nr0_A 172 -VAIFEGPPFK-FKSTFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248 (611)
T ss_dssp -EEEEETTTBE-EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC
T ss_pred -EEEEECCCCe-EeeeeccccCceEEEEECCCC-CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC
Confidence 9999987654 477889999999999999999 6999999999999999987764320000001122799999999999
Q ss_pred CCCCceEEEEcCCcEEEEEC
Q 035558 234 SSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 234 ~~~~~~~~~~~~~~i~vw~l 253 (253)
|+++.+++++.|+.|++|++
T Consensus 249 pdg~~l~s~s~D~~v~lWd~ 268 (611)
T 1nr0_A 249 PDGTKIASASADKTIKIWNV 268 (611)
T ss_dssp TTSSEEEEEETTSEEEEEET
T ss_pred CCCCEEEEEeCCCeEEEEeC
Confidence 99999999999999999985
No 28
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=9.8e-38 Score=265.13 Aligned_cols=235 Identities=17% Similarity=0.306 Sum_probs=197.6
Q ss_pred CCCCCceEEeec-C-cEEEEEccCCccc-cceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee
Q 035558 1 ECQKPDLLATSS-D-FLRVWRISDEDRR-VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV 77 (253)
Q Consensus 1 sp~~~~~l~~~~-~-~v~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 77 (253)
+|+++++|++|+ | +|++|++...... ......+.+|. ..|.+++|+ +++++|++|+.||.|++||+.+++.
T Consensus 391 ~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~-----~~v~~v~~s-~~g~~l~sgs~Dg~v~vwd~~~~~~ 464 (694)
T 3dm0_A 391 PIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHS-----HFVEDVVLS-SDGQFALSGSWDGELRLWDLAAGVS 464 (694)
T ss_dssp CTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCS-----SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEE
T ss_pred cCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCC-----CcEEEEEEC-CCCCEEEEEeCCCcEEEEECCCCcc
Confidence 366778999988 5 9999999764221 13456788998 899999999 8999999999999999999999999
Q ss_pred eeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC-CCEEEEEEeCCCeE
Q 035558 78 DTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD-PRYMATIIMDSAKV 155 (253)
Q Consensus 78 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~i 155 (253)
...+.+|...|.+++|+ ++++|++++.|++|++||+..............|...|.+++|+|.. ...+++++.|+. |
T Consensus 465 ~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~-v 543 (694)
T 3dm0_A 465 TRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKT-V 543 (694)
T ss_dssp EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSC-E
T ss_pred eeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCe-E
Confidence 99999999999999999 99999999999999999987654333333334677789999999933 258999999998 9
Q ss_pred EEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC
Q 035558 156 VVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS 235 (253)
Q Consensus 156 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 235 (253)
++||+++.. ....+.+|...|++++|+|++ ++|++|+.||+|++||+++++.. ....+...|.+++|+|+
T Consensus 544 ~vwd~~~~~-~~~~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~~--------~~~~~~~~v~~~~~sp~ 613 (694)
T 3dm0_A 544 KVWNLSNCK-LRSTLAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKKL--------YSLEANSVIHALCFSPN 613 (694)
T ss_dssp EEEETTTCC-EEEEECCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTEEE--------ECCBCSSCEEEEEECSS
T ss_pred EEEECCCCc-EEEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceE--------EEecCCCcEEEEEEcCC
Confidence 999999865 477889999999999999999 69999999999999999887633 23345678999999999
Q ss_pred CCceEEEEcCCcEEEEEC
Q 035558 236 QPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 236 ~~~~~~~~~~~~i~vw~l 253 (253)
+. +++++.++.|++|++
T Consensus 614 ~~-~l~~~~~~~i~iwd~ 630 (694)
T 3dm0_A 614 RY-WLCAATEHGIKIWDL 630 (694)
T ss_dssp SS-EEEEEETTEEEEEET
T ss_pred Cc-EEEEEcCCCEEEEEC
Confidence 85 677777888999985
No 29
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=5.4e-38 Score=252.80 Aligned_cols=245 Identities=21% Similarity=0.358 Sum_probs=196.6
Q ss_pred CCCCceEEeecC--cEEEEEccCC------ccccceeeeecCCCCccccCCeeEEEecCCCCC-EEEEEeCCCeEEEEec
Q 035558 2 CQKPDLLATSSD--FLRVWRISDE------DRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPR-RIGTSSIDTTCTIWDI 72 (253)
Q Consensus 2 p~~~~~l~~~~~--~v~iw~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~ 72 (253)
|+++.+|++++. .|++|++... .........+.+|. ..|++++|+ +++. +|++|+.||.|++|++
T Consensus 138 p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~l~~~-~~~~~~l~s~~~dg~i~vwd~ 211 (430)
T 2xyi_A 138 PQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ-----KEGYGLSWN-PNLNGYLLSASDDHTICLWDI 211 (430)
T ss_dssp TTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCS-----SCCCCEEEC-TTSTTEEEEECTTSCEEEEET
T ss_pred CCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCC-----CCeEEEEeC-CCCCCeEEEEeCCCeEEEEeC
Confidence 556788998884 9999999761 01136677788898 899999999 5655 9999999999999999
Q ss_pred cCcee-------eeeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCC
Q 035558 73 EREAV-------DTQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPR 143 (253)
Q Consensus 73 ~~~~~-------~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 143 (253)
..+.. ...+.+|...|.+++|+ ++.+|++++.||.|++||+++............+...|++++|+|....
T Consensus 212 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~ 291 (430)
T 2xyi_A 212 NATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 291 (430)
T ss_dssp TSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTT
T ss_pred CCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCC
Confidence 87321 44566899999999999 6789999999999999999987422233333466679999999994445
Q ss_pred EEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCC-------CCC
Q 035558 144 YMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEG-------GLD 216 (253)
Q Consensus 144 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~ 216 (253)
++++++.++. |++||+++...++..+..|...|.+++|+|++..+|++++.||.|++||+......... ...
T Consensus 292 ~l~tg~~dg~-v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 370 (430)
T 2xyi_A 292 ILATGSADKT-VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 370 (430)
T ss_dssp EEEEEETTSE-EEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTE
T ss_pred EEEEEeCCCe-EEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcce
Confidence 7889999988 99999998777788999999999999999998667999999999999999874321100 011
Q ss_pred CeeeccCCCceeEEEEcCCCC-ceEEEEcCCcEEEEEC
Q 035558 217 PILAYTAGAEIEQLQWSSSQP-DWVAIAFSTKLQILRV 253 (253)
Q Consensus 217 ~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~vw~l 253 (253)
.....+|...|++++|+|+++ .+++++.|+.|++|++
T Consensus 371 ~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 371 LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp EEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred EEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence 234457889999999999998 6778999999999985
No 30
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-38 Score=243.19 Aligned_cols=236 Identities=19% Similarity=0.294 Sum_probs=180.5
Q ss_pred CCceEEeec-C-cEEEEEccCCc---cccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc---
Q 035558 4 KPDLLATSS-D-FLRVWRISDED---RRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE--- 75 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--- 75 (253)
++.+|++++ | +|++|++.... ...+....+.+|. ..|.+++|+ |++++|++|+.|++|++||+...
T Consensus 69 ~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~-----~~V~~v~~s-p~g~~las~s~D~~v~iwd~~~~~~~ 142 (330)
T 2hes_X 69 HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHE-----NEVKGVAWS-NDGYYLATCSRDKSVWIWETDESGEE 142 (330)
T ss_dssp TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC---------CEEEEEEC-TTSCEEEEEETTSCEEEEECCTTCCC
T ss_pred CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCC-----CcEEEEEEC-CCCCEEEEEeCCCEEEEEeccCCCCC
Confidence 567788877 5 99999986421 1235667788998 899999999 88999999999999999999432
Q ss_pred -eeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC-CCEEEEEEeCC
Q 035558 76 -AVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD-PRYMATIIMDS 152 (253)
Q Consensus 76 -~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~ 152 (253)
+.+..+.+|...|.+++|+ ++.+|++++.|++|++||.+++.. ..+.....|...|.+++|+|.. +.+|++++.|+
T Consensus 143 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~ 221 (330)
T 2hes_X 143 YECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW-ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS 221 (330)
T ss_dssp CEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTS
T ss_pred eEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe-eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCC
Confidence 4567788999999999999 999999999999999999876531 2334445777899999999932 56899999999
Q ss_pred CeEEEEECCCCC-------CCeeeecc-cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCC
Q 035558 153 AKVVVLDIRFPT-------LPVVELQR-HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAG 224 (253)
Q Consensus 153 ~~i~~~d~~~~~-------~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 224 (253)
. |++||++... .....+.. |...|.+++|++++ +|++++.||.|++||...+.... ......+|.
T Consensus 222 ~-v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~~~~----~~~~~~~h~ 294 (330)
T 2hes_X 222 T-VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGEWKV----FAKRALCHG 294 (330)
T ss_dssp C-EEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTEEEE----EEEESCTTT
T ss_pred e-EEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCceEE----Eeccccccc
Confidence 8 9999997542 12333444 88999999999764 89999999999999987653111 001234677
Q ss_pred C-ceeEEEEcC--CCCceEEEEcCCcEEEEEC
Q 035558 225 A-EIEQLQWSS--SQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 225 ~-~v~~~~~~~--~~~~~~~~~~~~~i~vw~l 253 (253)
. .|.+++|+| +++.|++++.|+.|++|++
T Consensus 295 ~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 295 VYEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp TSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred cceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 6 899999999 6778889999999999985
No 31
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.1e-37 Score=249.82 Aligned_cols=233 Identities=16% Similarity=0.203 Sum_probs=194.9
Q ss_pred CCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558 2 CQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT 79 (253)
Q Consensus 2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 79 (253)
++++.+|++++ + .|++||+..+ +....+.+|. ..|++++|+ +++++|++|+.|+.|++||+++++.+.
T Consensus 106 ~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~-----~~v~~~~~~-~~~~~l~s~s~d~~i~iwd~~~~~~~~ 175 (420)
T 3vl1_A 106 KLQMRRFILGTTEGDIKVLDSNFN----LQREIDQAHV-----SEITKLKFF-PSGEALISSSQDMQLKIWSVKDGSNPR 175 (420)
T ss_dssp CSSSCEEEEEETTSCEEEECTTSC----EEEEETTSSS-----SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCCCE
T ss_pred ecCCCEEEEEECCCCEEEEeCCCc----ceeeeccccc-----CccEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCcCce
Confidence 35677888877 4 9999999986 7777788998 899999999 789999999999999999999999999
Q ss_pred eeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCC---------------------CCeeEEEe
Q 035558 80 QLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPD---------------------TPLVRLGW 137 (253)
Q Consensus 80 ~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------------------~~i~~~~~ 137 (253)
.+.+|...|.+++|+ ++++|++++.||.|++||+++++....+.....+. ..+.+++|
T Consensus 176 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~ 255 (420)
T 3vl1_A 176 TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 255 (420)
T ss_dssp EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCS
T ss_pred EEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEE
Confidence 999999999999999 99999999999999999999887555544333333 34555566
Q ss_pred eCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCC
Q 035558 138 NKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDP 217 (253)
Q Consensus 138 ~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 217 (253)
+| +++++++++.++. |++||+++..........|...|.+++|+|++..+|++|+.||.|++||++++..+.
T Consensus 256 s~-~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~------ 327 (420)
T 3vl1_A 256 GT-YGKYVIAGHVSGV-ITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPV------ 327 (420)
T ss_dssp SC-TTEEEEEEETTSC-EEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS------
T ss_pred cC-CCCEEEEEcCCCe-EEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCch------
Confidence 77 8899999999999 999999987653444456889999999999994499999999999999999876543
Q ss_pred eeecc-CCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 218 ILAYT-AGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 218 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
..... |...|..+.|. +++.+++++.|+.+++|++
T Consensus 328 ~~~~~~~~~~v~~~~~~-~~~~l~s~~~d~~v~iw~~ 363 (420)
T 3vl1_A 328 GEFLINEGTPINNVYFA-AGALFVSSGFDTSIKLDII 363 (420)
T ss_dssp EEEEESTTSCEEEEEEE-TTEEEEEETTTEEEEEEEE
T ss_pred hhhhccCCCCceEEEeC-CCCEEEEecCCccEEEEec
Confidence 34444 77888888665 6667889999999999984
No 32
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.7e-37 Score=260.08 Aligned_cols=232 Identities=16% Similarity=0.197 Sum_probs=191.4
Q ss_pred CCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558 2 CQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT 79 (253)
Q Consensus 2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 79 (253)
|..+.+|++++ | +|++||.... +....+.+|. ..|.+++|+ |++++|++|+.|++|++||+.+++.+.
T Consensus 157 p~~~~~l~s~s~D~~v~lwd~~~~----~~~~~l~~H~-----~~V~~v~fs-pdg~~las~s~D~~i~lwd~~~g~~~~ 226 (611)
T 1nr0_A 157 PSRPFRIISGSDDNTVAIFEGPPF----KFKSTFGEHT-----KFVHSVRYN-PDGSLFASTGGDGTIVLYNGVDGTKTG 226 (611)
T ss_dssp SSSSCEEEEEETTSCEEEEETTTB----EEEEEECCCS-----SCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCCCeEEEEEeCCCeEEEEECCCC----eEeeeecccc-----CceEEEEEC-CCCCEEEEEECCCcEEEEECCCCcEee
Confidence 55555678777 5 9999998876 7788899999 899999999 899999999999999999999988877
Q ss_pred eee-------cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeee-----------------------------
Q 035558 80 QLI-------AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTII----------------------------- 122 (253)
Q Consensus 80 ~~~-------~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------------------------- 122 (253)
.+. +|.+.|.+++|+ ++++|++++.|++|++||+++++....+
T Consensus 227 ~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i 306 (611)
T 1nr0_A 227 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 306 (611)
T ss_dssp ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCE
T ss_pred eeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcE
Confidence 774 799999999999 9999999999999999999876533221
Q ss_pred -----------eccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeee-c-------------------
Q 035558 123 -----------YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVEL-Q------------------- 171 (253)
Q Consensus 123 -----------~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~-~------------------- 171 (253)
....+|...|.+++|+| ++++|++++.|+. |++||+.+... ...+ .
T Consensus 307 ~~~~~~~~~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~-v~~Wd~~~~~~-~~~~~~~h~~~v~~~~~s~~~~l~s 383 (611)
T 1nr0_A 307 NFVNPELGSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGH-INSWDISTGIS-NRVFPDVHATMITGIKTTSKGDLFT 383 (611)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSC-EEEEETTTCCE-EECSSCSCSSCEEEEEECTTSCEEE
T ss_pred EEEeCCCCCcceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCc-EEEEECCCCce-eeecccCCcceEEEEEECCCCcEEE
Confidence 12235777999999999 9999999999998 99999875431 0000 0
Q ss_pred --------------------------------------------------------------ccccceeEEEEecCCCCe
Q 035558 172 --------------------------------------------------------------RHQASVNAIAWAPHSSCH 189 (253)
Q Consensus 172 --------------------------------------------------------------~~~~~i~~~~~~~~~~~~ 189 (253)
.|...+.+++|+|++ ++
T Consensus 384 ~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg-~~ 462 (611)
T 1nr0_A 384 VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDK-QF 462 (611)
T ss_dssp EETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTS-CE
T ss_pred EEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCC-CE
Confidence 123457789999999 69
Q ss_pred EEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 190 ICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 190 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
|++|+.|++|++||+....... ....+|...|++++|+|+++++++++.|+.+++|++
T Consensus 463 lasgs~D~~v~lwd~~~~~~~~------~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~ 520 (611)
T 1nr0_A 463 VAVGGQDSKVHVYKLSGASVSE------VKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSV 520 (611)
T ss_dssp EEEEETTSEEEEEEEETTEEEE------EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEG
T ss_pred EEEeCCCCeEEEEEccCCceee------eeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEc
Confidence 9999999999999998753211 123679999999999999999999999999999984
No 33
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.7e-37 Score=239.45 Aligned_cols=210 Identities=18% Similarity=0.221 Sum_probs=182.4
Q ss_pred cccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-----eeeeeeecccccEEEEEec-CCCe
Q 035558 25 RRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-----AVDTQLIAHDKEVYDIAWG-GVGV 98 (253)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~~-~~~~ 98 (253)
+.+.+..++++|. ++|++++|+|.++++|++|+.|++|++|++... ..+..+.+|...|.+++|+ ++++
T Consensus 5 ~~~~l~~~l~gH~-----~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~ 79 (319)
T 3frx_A 5 EVLVLRGTLEGHN-----GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY 79 (319)
T ss_dssp EEEEEEEEECCCS-----SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSE
T ss_pred eEEEEEEEEcccc-----ceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCE
Confidence 3456778899999 999999999556689999999999999998642 3567788999999999999 9999
Q ss_pred EEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccccccee
Q 035558 99 FASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVN 178 (253)
Q Consensus 99 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~ 178 (253)
|++++.|++|++||+++++.. .....|...|.+++|+| ++.++++++.|+. |++||++. .++..+.+|...|.
T Consensus 80 l~s~s~D~~v~~wd~~~~~~~---~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~-i~vwd~~~--~~~~~~~~h~~~v~ 152 (319)
T 3frx_A 80 ALSASWDKTLRLWDVATGETY---QRFVGHKSDVMSVDIDK-KASMIISGSRDKT-IKVWTIKG--QCLATLLGHNDWVS 152 (319)
T ss_dssp EEEEETTSEEEEEETTTTEEE---EEEECCSSCEEEEEECT-TSCEEEEEETTSC-EEEEETTS--CEEEEECCCSSCEE
T ss_pred EEEEeCCCEEEEEECCCCCee---EEEccCCCcEEEEEEcC-CCCEEEEEeCCCe-EEEEECCC--CeEEEEeccCCcEE
Confidence 999999999999999988743 33446777999999999 9999999999999 99999974 34788889999999
Q ss_pred EEEEecCC-----CCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 179 AIAWAPHS-----SCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 179 ~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
+++|.|.. ..+|++++.|+.|++||++..... ..+.+|...|.+++|+|+++++++++.|+.|++|++
T Consensus 153 ~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-------~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~ 225 (319)
T 3frx_A 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE-------ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225 (319)
T ss_dssp EEEECCC------CCEEEEEETTSCEEEEETTTTEEE-------EEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhh-------eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 99999853 148999999999999999876533 366789999999999999999999999999999985
No 34
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-38 Score=250.23 Aligned_cols=234 Identities=16% Similarity=0.225 Sum_probs=182.1
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---e
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---V 77 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~ 77 (253)
+++.+|++++ + .|++|++..+ ..+....+.+|. ..|.+++|+ +++++|++++.|+.|++||+++++ .
T Consensus 21 ~~g~~l~~~~~d~~i~iw~~~~~--~~~~~~~~~~h~-----~~v~~~~~s-~~~~~l~s~s~d~~v~vwd~~~~~~~~~ 92 (377)
T 3dwl_C 21 SQRTEFVTTTATNQVELYEQDGN--GWKHARTFSDHD-----KIVTCVDWA-PKSNRIVTCSQDRNAYVYEKRPDGTWKQ 92 (377)
T ss_dssp SSSSEEECCCSSSCBCEEEEETT--EEEECCCBCCCS-----SCEEEEEEC-TTTCCEEEEETTSSEEEC------CCCC
T ss_pred CCCCEEEEecCCCEEEEEEccCC--ceEEEEEEecCC-----ceEEEEEEe-CCCCEEEEEeCCCeEEEEEcCCCCceee
Confidence 3677888886 5 9999999873 235677788898 899999999 889999999999999999999877 5
Q ss_pred eeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCC-CCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558 78 DTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSE-PDTPLVRLGWNKQDPRYMATIIMDSAKV 155 (253)
Q Consensus 78 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~~~~~i 155 (253)
...+..|...|.+++|+ ++++|++++.|+.|++||+++.+.......... |...|.+++|+| ++++|++++.|+. |
T Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~-i 170 (377)
T 3dwl_C 93 TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRK-A 170 (377)
T ss_dssp EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEEEEESSSC-E
T ss_pred eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCE-E
Confidence 66677899999999999 999999999999999999998764222333333 677999999999 8999999999999 9
Q ss_pred EEEECCCCC-----------------CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCe
Q 035558 156 VVLDIRFPT-----------------LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPI 218 (253)
Q Consensus 156 ~~~d~~~~~-----------------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 218 (253)
++||++... .++..+ .|...|.+++|+|++ ++|++++.||.|++||+++...+. ....
T Consensus 171 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~---~~~~ 245 (377)
T 3dwl_C 171 YVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQPP---RALI 245 (377)
T ss_dssp EEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSCE---EECC
T ss_pred EEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCcc---eeeE
Confidence 999986321 123444 889999999999999 699999999999999999887521 0013
Q ss_pred eeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 219 LAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 219 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
...+|..+|.+++|+|+++.+ +++.++.+.+|+
T Consensus 246 ~~~~~~~~v~~~~~s~~~~~l-~~~~~~~~~~~~ 278 (377)
T 3dwl_C 246 TVKLSQLPLRSLLWANESAIV-AAGYNYSPILLQ 278 (377)
T ss_dssp CEECSSSCEEEEEEEETTEEE-EEESSSSEEEEC
T ss_pred eecCCCCceEEEEEcCCCCEE-EEEcCCcEEEEE
Confidence 667899999999999999754 555566666775
No 35
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.4e-37 Score=244.49 Aligned_cols=238 Identities=11% Similarity=0.153 Sum_probs=192.3
Q ss_pred CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCC----CCEEEEEeCCCeEEEEeccCceeee
Q 035558 5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAE----PRRIGTSSIDTTCTIWDIEREAVDT 79 (253)
Q Consensus 5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~dg~i~vwd~~~~~~~~ 79 (253)
..+++++++ .|++|++..+ +....+..|....+...|++++|+ ++ +.+|++|+.||.|++||+++++.+.
T Consensus 35 ~~~~~~~~~~~v~vw~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~ 109 (366)
T 3k26_A 35 PLVFATVGSNRVTLYECHSQ----GEIRLLQSYVDADADENFYTCAWT-YDSNTSHPLLAVAGSRGIIRIINPITMQCIK 109 (366)
T ss_dssp CEEEEEEETTEEEEEEECGG----GCEEEEEEEECSCTTCCEEEEEEE-ECTTTCCEEEEEEETTCEEEEECTTTCCEEE
T ss_pred ceEEEECCCCEEEEEEcCCC----cEEEeeeeccccCCCCcEEEEEec-cCCCCCCCEEEEecCCCEEEEEEchhceEee
Confidence 346666767 9999999976 555566655443344789999999 55 5799999999999999999999999
Q ss_pred eeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558 80 QLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV 157 (253)
Q Consensus 80 ~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~ 157 (253)
.+.+|...|.+++|+ ++++|++++.||.|++||+++++....+.....+...|.+++|+| ++++|++++.|+. |++
T Consensus 110 ~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~-i~i 187 (366)
T 3k26_A 110 HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHS-LKL 187 (366)
T ss_dssp EEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSC-EEE
T ss_pred eecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC-CCCEEEEecCCCC-EEE
Confidence 999999999999999 688999999999999999998875544433356778999999999 8999999999988 999
Q ss_pred EECCCCCC------------------------------------------------------------------------
Q 035558 158 LDIRFPTL------------------------------------------------------------------------ 165 (253)
Q Consensus 158 ~d~~~~~~------------------------------------------------------------------------ 165 (253)
||+++...
T Consensus 188 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 267 (366)
T 3k26_A 188 WRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDK 267 (366)
T ss_dssp EESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGG
T ss_pred EECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccc
Confidence 99874310
Q ss_pred ---------CeeeecccccceeEEEEecC--CCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC--CCceeEEEE
Q 035558 166 ---------PVVELQRHQASVNAIAWAPH--SSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA--GAEIEQLQW 232 (253)
Q Consensus 166 ---------~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~ 232 (253)
.+..+..|...|++++|+|+ + ++|++++.||.|++||+..++... .....+..| ...|++++|
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~---~~~~~~~~~~~~~~v~~~~~ 343 (366)
T 3k26_A 268 IKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ-KMLALGNQVGKLYVWDLEVEDPHK---AKCTTLTHHKCGAAIRQTSF 343 (366)
T ss_dssp CCTTCCCEEEEEEEECSSCCSSCCCCEECTTS-SEEEEECTTSCEEEEECCSSSGGG---CEEEEECCTTCCSCEEEEEE
T ss_pred cccCCcchheeccccccCCcEEEEEEcCCCCC-cEEEEEecCCcEEEEECCCCCCcc---ccceEEcccccCCceEEEEe
Confidence 02333446667888889998 7 699999999999999998865321 111244455 799999999
Q ss_pred cCCCCceEEEEcCCcEEEEEC
Q 035558 233 SSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 233 ~~~~~~~~~~~~~~~i~vw~l 253 (253)
+|+++.+++++.|+.|++|++
T Consensus 344 s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 344 SRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp CTTSSEEEEEETTSEEEEEEC
T ss_pred CCCCCeEEEEeCCCEEEEEEe
Confidence 999999999999999999986
No 36
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.7e-37 Score=256.24 Aligned_cols=221 Identities=17% Similarity=0.315 Sum_probs=192.5
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
+++.+|++++ + .|++|+... +....+.+|. ..|.+++|+ +++++|++++.|+.|++||. +++.+..
T Consensus 354 ~~g~~l~~~~~dg~v~~~~~~~-----~~~~~~~~~~-----~~v~~~~~s-~dg~~l~~~~~d~~v~~~~~-~~~~~~~ 421 (577)
T 2ymu_A 354 PDGQTIASASDDKTVKLWNRNG-----QLLQTLTGHS-----SSVRGVAFS-PDGQTIASASDDKTVKLWNR-NGQLLQT 421 (577)
T ss_dssp TTSSEEEEEETTSEEEEEETTC-----CEEEEEECCS-----SCEEEEEEC-TTSSCEEEEETTSEEEEECT-TCCEEEE
T ss_pred CCCCEEEEEeCCCEEEEEcCCC-----CEEEEecCCC-----CCeEEEEEC-CCCCEEEEEeCCCEEEEEeC-CCCEEEE
Confidence 4677888877 4 999999765 6778888998 899999999 89999999999999999996 4677888
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
+.+|...|++++|+ ++++|++++.|+.|++||... + .+.....+...|.+++|+| ++++|++++.|+. |++||
T Consensus 422 ~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~---~~~~~~~~~~~v~~~~~sp-d~~~las~~~d~~-i~iw~ 495 (577)
T 2ymu_A 422 LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q---LLQTLTGHSSSVRGVAFSP-DGQTIASASDDKT-VKLWN 495 (577)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C---EEEEEECCSSCEEEEEECT-TSCEEEEEETTSE-EEEEE
T ss_pred ecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C---EEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCE-EEEEc
Confidence 89999999999999 999999999999999999754 3 2333346677999999999 9999999999998 99999
Q ss_pred CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558 160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW 239 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 239 (253)
.. ...+..+.+|...|++++|+|++ ++|++++.||.|++||.. ++. ...+.+|..+|++++|+|++++|
T Consensus 496 ~~--~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~v~lwd~~-~~~-------~~~~~~h~~~v~~~~fs~dg~~l 564 (577)
T 2ymu_A 496 RN--GQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQL-------LQTLTGHSSSVWGVAFSPDGQTI 564 (577)
T ss_dssp TT--SCEEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTT-SCE-------EEEEECCSSCEEEEEECTTSSCE
T ss_pred CC--CCEEEEEeCCCCCEEEEEEcCCC-CEEEEEECcCEEEEEeCC-CCE-------EEEEcCCCCCEEEEEEcCCCCEE
Confidence 64 33578899999999999999999 699999999999999964 332 24677899999999999999999
Q ss_pred EEEEcCCcEEEEE
Q 035558 240 VAIAFSTKLQILR 252 (253)
Q Consensus 240 ~~~~~~~~i~vw~ 252 (253)
++++.|+.|++|+
T Consensus 565 ~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 565 ASASSDKTVKLWN 577 (577)
T ss_dssp EEEETTSCEEEEC
T ss_pred EEEeCCCEEEEeC
Confidence 9999999999996
No 37
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-38 Score=257.41 Aligned_cols=231 Identities=12% Similarity=0.109 Sum_probs=179.2
Q ss_pred CceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCC-----CCCEEEEEeCCCeEEEEeccCcee
Q 035558 5 PDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEA-----EPRRIGTSSIDTTCTIWDIEREAV 77 (253)
Q Consensus 5 ~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~dg~i~vwd~~~~~~ 77 (253)
+.++++++ | +|+||++..+.........+.+|. +.|.+++|+|. ++.+||+++.||+|++||+..++.
T Consensus 173 ~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~-----~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~ 247 (524)
T 2j04_B 173 LEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSF-----GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNAT 247 (524)
T ss_dssp ---------CEEEEEEEEETTTCCEEEEEEEEECC-----CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSS
T ss_pred hhhhccCCCCceEEEEEccCCCCCceEEEEEEecC-----CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcc
Confidence 44556666 4 999999987511112234466777 78999999953 257999999999999999976542
Q ss_pred -----------eeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEE--EeeCCCC-C
Q 035558 78 -----------DTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRL--GWNKQDP-R 143 (253)
Q Consensus 78 -----------~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~-~ 143 (253)
...+.+|...|++++|+.+..|++|+.||+|++||++++..+.. ....|...|.++ +|+| ++ .
T Consensus 248 ~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~--~~~~H~~~V~sv~~~~s~-~g~~ 324 (524)
T 2j04_B 248 DVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSF--YDQVHDSYILSVSTAYSD-FEDT 324 (524)
T ss_dssp SSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSE--EEECSSSCEEEEEEECCT-TSCC
T ss_pred ccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceE--EeecccccEEEEEEEcCC-CCCe
Confidence 23567899999999999445899999999999999997643222 223567799999 5666 76 8
Q ss_pred EEEEEEeCCCeEEEEECCCCCCCeeeeccccc--ceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeec
Q 035558 144 YMATIIMDSAKVVVLDIRFPTLPVVELQRHQA--SVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAY 221 (253)
Q Consensus 144 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 221 (253)
+|++++.|+. |++||+++.+. ...+.+|.. .|.+++|+|++ +.|++++.|++|++||++.+.... .+.
T Consensus 325 ~laS~S~D~t-vklWD~~~~~~-~~~~~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~~-------~l~ 394 (524)
T 2j04_B 325 VVSTVAVDGY-FYIFNPKDIAT-TKTTVSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFAVH-------PLV 394 (524)
T ss_dssp EEEEEETTSE-EEEECGGGHHH-HCEEEEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTCCE-------EEE
T ss_pred EEEEeccCCe-EEEEECCCCCc-ccccccccccCcccceEeCCCc-CeEEEeCCCCcEEEEECcccccce-------eee
Confidence 9999999998 99999987553 455556653 48899999998 589999999999999999876443 667
Q ss_pred cCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 222 TAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 222 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
+|...|++|+|+|+++.+++++.|+.|++|++
T Consensus 395 gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 395 SRETTITAIGVSRLHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp ECSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred cCCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence 89999999999999999999999999999974
No 38
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-37 Score=241.89 Aligned_cols=238 Identities=19% Similarity=0.301 Sum_probs=197.1
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCC--CCEEEEEeCCCeEEEEeccCce--
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAE--PRRIGTSSIDTTCTIWDIEREA-- 76 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~-- 76 (253)
+++.+|++++ + .|++|++... ..+....+.+|. .+|++++|+ ++ +++|++|+.||.|++||+++++
T Consensus 21 ~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~h~-----~~v~~~~~~-~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 92 (379)
T 3jrp_A 21 YYGKRLATCSSDKTIKIFEVEGE--THKLIDTLTGHE-----GPVWRVDWA-HPKFGTILASCSYDGKVLIWKEENGRWS 92 (379)
T ss_dssp SSSSEEEEEETTSCEEEEEEETT--EEEEEEEECCCS-----SCEEEEEEC-CGGGCSEEEEEETTSCEEEEEEETTEEE
T ss_pred CCCCEEEEEECCCcEEEEecCCC--cceeeeEecCCC-----CcEEEEEeC-CCCCCCEEEEeccCCEEEEEEcCCCcee
Confidence 3567788876 5 9999999842 236777888998 899999998 44 8999999999999999999887
Q ss_pred eeeeeecccccEEEEEec-C--CCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC------------C
Q 035558 77 VDTQLIAHDKEVYDIAWG-G--VGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ------------D 141 (253)
Q Consensus 77 ~~~~~~~~~~~v~~~~~~-~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~ 141 (253)
.+..+..|...|.+++|+ + +.+|++++.|+.|++||+++....... ....+...|.+++|+|. +
T Consensus 93 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 171 (379)
T 3jrp_A 93 QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKE 171 (379)
T ss_dssp EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE-EEECCTTCEEEEEECCCC----------CT
T ss_pred EeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE-EecCCCCceEEEEEcCccccccccccCCCC
Confidence 677778899999999999 7 899999999999999999987543332 22356669999999995 5
Q ss_pred CCEEEEEEeCCCeEEEEECCCCCC---CeeeecccccceeEEEEecC---CCCeEEEecCCCcEEEEeccCCCCCCCCCC
Q 035558 142 PRYMATIIMDSAKVVVLDIRFPTL---PVVELQRHQASVNAIAWAPH---SSCHICTAGDDSQALIWDLSSMGQPVEGGL 215 (253)
Q Consensus 142 ~~~l~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 215 (253)
+.++++++.|+. |++||++.... ....+..|...|.+++|+|+ + .+|++++.||.|++||++....+.. .
T Consensus 172 ~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~--~ 247 (379)
T 3jrp_A 172 SRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-SYLASVSQDRTCIIWTQDNEQGPWK--K 247 (379)
T ss_dssp TCEEEEEETTSC-EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS-EEEEEEETTSCEEEEEESSTTSCCE--E
T ss_pred CCEEEEEeCCCe-EEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC-CeEEEEeCCCEEEEEeCCCCCccce--e
Confidence 899999999998 99999987653 24567789999999999999 6 7999999999999999998753320 0
Q ss_pred CCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 216 DPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 216 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
.......|...|.+++|+|+++++++++.|+.+++|++
T Consensus 248 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 248 TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 285 (379)
T ss_dssp EESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred eeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence 01122348889999999999999999999999999984
No 39
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.3e-36 Score=234.67 Aligned_cols=208 Identities=17% Similarity=0.296 Sum_probs=185.1
Q ss_pred cceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCC
Q 035558 27 VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSAD 105 (253)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d 105 (253)
......+.+|. .+|++++|+ +++++|++|+.||.|++|++.+++....+.+|...|.+++|+ ++++|++++.|
T Consensus 13 ~~~~~~~~gh~-----~~v~~~~~s-~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 86 (312)
T 4ery_A 13 YALKFTLAGHT-----KAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD 86 (312)
T ss_dssp CEEEEEECCCS-----SCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ceeEEEEcccC-----CcEEEEEEC-CCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCC
Confidence 35667788998 899999999 899999999999999999999999999999999999999999 99999999999
Q ss_pred CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecC
Q 035558 106 GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPH 185 (253)
Q Consensus 106 g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~ 185 (253)
+.|++||+++++....+ ..+...|.+++|+| +++++++++.|+. |++||+++.+ .+..+..|..+|.+++|+|+
T Consensus 87 ~~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~-~~~~l~s~~~d~~-i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~ 160 (312)
T 4ery_A 87 KTLKIWDVSSGKCLKTL---KGHSNYVFCCNFNP-QSNLIVSGSFDES-VRIWDVKTGK-CLKTLPAHSDPVSAVHFNRD 160 (312)
T ss_dssp SEEEEEETTTCCEEEEE---ECCSSCEEEEEECS-SSSEEEEEETTSC-EEEEETTTCC-EEEEECCCSSCEEEEEECTT
T ss_pred CEEEEEECCCCcEEEEE---cCCCCCEEEEEEcC-CCCEEEEEeCCCc-EEEEECCCCE-EEEEecCCCCcEEEEEEcCC
Confidence 99999999988744333 45667899999999 8999999999999 9999999865 47888899999999999999
Q ss_pred CCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 186 SSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 186 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
+ .+|++++.||.|++||+++.+... .....+..++..++|+|+++++++++.|+.|++|++
T Consensus 161 ~-~~l~~~~~d~~i~~wd~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 221 (312)
T 4ery_A 161 G-SLIVSSSYDGLCRIWDTASGQCLK------TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 221 (312)
T ss_dssp S-SEEEEEETTSCEEEEETTTCCEEE------EECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred C-CEEEEEeCCCcEEEEECCCCceee------EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 9 699999999999999999876432 233456778999999999999999999999999985
No 40
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.9e-36 Score=236.93 Aligned_cols=232 Identities=20% Similarity=0.290 Sum_probs=183.0
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
+++.++++++ | +|++||+.++ +....+.+|. ..|.+++|+ |++++|++|+.|+.|++||+........
T Consensus 86 ~~~~~l~s~s~D~~v~lwd~~~~----~~~~~~~~h~-----~~v~~v~~s-p~~~~l~s~~~d~~i~~wd~~~~~~~~~ 155 (343)
T 2xzm_R 86 QENCFAISSSWDKTLRLWDLRTG----TTYKRFVGHQ-----SEVYSVAFS-PDNRQILSAGAEREIKLWNILGECKFSS 155 (343)
T ss_dssp SSTTEEEEEETTSEEEEEETTSS----CEEEEEECCC-----SCEEEEEEC-SSTTEEEEEETTSCEEEEESSSCEEEEC
T ss_pred CCCCEEEEEcCCCcEEEEECCCC----cEEEEEcCCC-----CcEEEEEEC-CCCCEEEEEcCCCEEEEEeccCCceeee
Confidence 3566777877 5 9999999987 7888899999 899999999 8999999999999999999974432221
Q ss_pred --eecccccEEEEEec-CC----------CeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEE
Q 035558 81 --LIAHDKEVYDIAWG-GV----------GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 147 (253)
Q Consensus 81 --~~~~~~~v~~~~~~-~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 147 (253)
...|...|.+++|+ ++ .+|++++.||.|++||... + .......|...|.+++|+| ++++|++
T Consensus 156 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~---~~~~~~~h~~~v~~~~~s~-~g~~l~s 230 (343)
T 2xzm_R 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-Q---IRYTFKAHESNVNHLSISP-NGKYIAT 230 (343)
T ss_dssp CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-E---EEEEEECCSSCEEEEEECT-TSSEEEE
T ss_pred ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-c---eeEEEcCccccceEEEECC-CCCEEEE
Confidence 22688999999999 54 6899999999999999432 2 2333446777999999999 9999999
Q ss_pred EEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC--CCCCCC----eeec
Q 035558 148 IIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV--EGGLDP----ILAY 221 (253)
Q Consensus 148 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~----~~~~ 221 (253)
++.|+. |++||++....+...+ .+...|.+++|+|++ .+++ ++.|+.|++||+.+..... .....+ ....
T Consensus 231 gs~dg~-v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~-~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (343)
T 2xzm_R 231 GGKDKK-LLIWDILNLTYPQREF-DAGSTINQIAFNPKL-QWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQK 306 (343)
T ss_dssp EETTCE-EEEEESSCCSSCSEEE-ECSSCEEEEEECSSS-CEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBC
T ss_pred EcCCCe-EEEEECCCCcccceee-cCCCcEEEEEECCCC-CEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhc
Confidence 999998 9999996655444444 345679999999998 4665 4568899999998765321 000000 0123
Q ss_pred cCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 222 TAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 222 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
+|...|.+++|+|+++.+++++.|+.|++|++
T Consensus 307 ~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~ 338 (343)
T 2xzm_R 307 GKNPQCTSLAWNALGKKLFAGFTDGVIRTFSF 338 (343)
T ss_dssp CSCCCEEEEEECSSSCCEEEEETTSEEEEEEE
T ss_pred CCCCceEEEEECCCCCeEEEecCCceEEEEEE
Confidence 68889999999999999999999999999984
No 41
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.2e-37 Score=244.07 Aligned_cols=228 Identities=11% Similarity=0.120 Sum_probs=179.5
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe--CCCeEEEEeccCceeeeeeecccccEEEE
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS--IDTTCTIWDIEREAVDTQLIAHDKEVYDI 91 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 91 (253)
.+|+|++.......+.....+..........+.+++|+ |+++++++++ .|++|++||+++++.+..+. |...|.++
T Consensus 105 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fS-pDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v 182 (365)
T 4h5i_A 105 HLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYIS-REGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDL 182 (365)
T ss_dssp CEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEEC-TTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEE
T ss_pred cEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEc-CCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEE
Confidence 89999987753333333333333222222568999999 8999877554 78999999999999888876 78899999
Q ss_pred Eec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC---eEEEEECCCCCC--
Q 035558 92 AWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA---KVVVLDIRFPTL-- 165 (253)
Q Consensus 92 ~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~---~i~~~d~~~~~~-- 165 (253)
+|+ +++++++++.+ .+++|+..+++.... .....+...+.+++|+| ++.++++++.++. .++.||+.....
T Consensus 183 ~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~ 259 (365)
T 4h5i_A 183 HFSTDGKVVAYITGS-SLEVISTVTGSCIAR-KTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSV 259 (365)
T ss_dssp EECTTSSEEEEECSS-CEEEEETTTCCEEEE-ECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEE
T ss_pred EEccCCceEEeccce-eEEEEEeccCcceee-eecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceecc
Confidence 999 99999999855 567777776653322 23345666899999999 9999999998873 478888876542
Q ss_pred -CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEc
Q 035558 166 -PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAF 244 (253)
Q Consensus 166 -~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 244 (253)
....+..|...|++++|+|++ ++|++|+.|++|+|||+++++... ....+|..+|++|+|+|++++|++++.
T Consensus 260 ~~~~~~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd~~~~~~~~------~~~~gH~~~V~~v~fSpdg~~laS~S~ 332 (365)
T 4h5i_A 260 LRSKQVTNRFKGITSMDVDMKG-ELAVLASNDNSIALVKLKDLSMSK------IFKQAHSFAITEVTISPDSTYVASVSA 332 (365)
T ss_dssp EEEEEEESSCSCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEEE------EETTSSSSCEEEEEECTTSCEEEEEET
T ss_pred eeeeeecCCCCCeEeEEECCCC-CceEEEcCCCEEEEEECCCCcEEE------EecCcccCCEEEEEECCCCCEEEEEeC
Confidence 134567889999999999999 699999999999999999876433 234689999999999999999999999
Q ss_pred CCcEEEEEC
Q 035558 245 STKLQILRV 253 (253)
Q Consensus 245 ~~~i~vw~l 253 (253)
|+.|+||+|
T Consensus 333 D~tvrvw~i 341 (365)
T 4h5i_A 333 ANTIHIIKL 341 (365)
T ss_dssp TSEEEEEEC
T ss_pred CCeEEEEEc
Confidence 999999986
No 42
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.5e-36 Score=236.70 Aligned_cols=244 Identities=17% Similarity=0.279 Sum_probs=196.0
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCC-CCCEEEEEeCCCeEEEEeccCc-----
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEA-EPRRIGTSSIDTTCTIWDIERE----- 75 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~----- 75 (253)
++.+|++++ + .|++|++..+....+....+.+|. .+|++++|+|. ++++|++|+.||.|++||++++
T Consensus 22 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~ 96 (351)
T 3f3f_A 22 YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHD-----SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECS 96 (351)
T ss_dssp SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCS-----SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTS
T ss_pred CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCC-----CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccc
Confidence 567778777 5 999999987534446777888998 89999999943 6899999999999999999876
Q ss_pred ----eeeeeeecccccEEEEEec-C--CCeEEEEeCCCcEEEEEcCCCCCeeeee----------ccCCCCCCeeEEEee
Q 035558 76 ----AVDTQLIAHDKEVYDIAWG-G--VGVFASVSADGSVRVFDLRDKEHSTIIY----------ESSEPDTPLVRLGWN 138 (253)
Q Consensus 76 ----~~~~~~~~~~~~v~~~~~~-~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------~~~~~~~~i~~~~~~ 138 (253)
+.+..+..|...|.+++|+ + +.++++++.||.|++||+++.+...... ....+...+.+++|+
T Consensus 97 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (351)
T 3f3f_A 97 GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWC 176 (351)
T ss_dssp SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEEC
T ss_pred ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEec
Confidence 4577778899999999999 7 9999999999999999999876433221 122456689999999
Q ss_pred CC--CCCEEEEEEeCCCeEEEEECCCCC-CCeeeecccccceeEEEEecCCC---CeEEEecCCCcEEEEeccCCCCCCC
Q 035558 139 KQ--DPRYMATIIMDSAKVVVLDIRFPT-LPVVELQRHQASVNAIAWAPHSS---CHICTAGDDSQALIWDLSSMGQPVE 212 (253)
Q Consensus 139 ~~--~~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~ 212 (253)
|. ++.++++++.++. +.+|+..... ..+..+.+|...|++++|+|+++ .+|++++.||.|++||++....+..
T Consensus 177 p~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 255 (351)
T 3f3f_A 177 PSRFSPEKLAVSALEQA-IIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLA 255 (351)
T ss_dssp CCSSSCCEEEEEETTEE-EEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----
T ss_pred cCCCCCcEEEEecCCCc-EEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccc
Confidence 93 3889999999887 8777766544 23667788999999999999973 4899999999999999987532110
Q ss_pred C---------------------------------------CCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 213 G---------------------------------------GLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 213 ~---------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
. ........+|...|++++|+|+++++++++.|+.|++|++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 335 (351)
T 3f3f_A 256 SEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKA 335 (351)
T ss_dssp -----------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred cCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEec
Confidence 0 0112334578999999999999999999999999999985
No 43
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=9.3e-37 Score=234.13 Aligned_cols=213 Identities=19% Similarity=0.298 Sum_probs=175.8
Q ss_pred eeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC--ceeeeeeecccccEEEEEec-C--CCeEEEEeC
Q 035558 30 KSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER--EAVDTQLIAHDKEVYDIAWG-G--VGVFASVSA 104 (253)
Q Consensus 30 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~-~--~~~l~~~~~ 104 (253)
+..+.+|. ..|++++|+ +++++|++|+.|++|++||+.. .+.+..+.+|.++|.+++|+ + +++|++|+.
T Consensus 2 ~~~~~~h~-----~~V~~~~~s-~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~ 75 (297)
T 2pm7_B 2 VVIANAHN-----EMIHDAVMD-YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 75 (297)
T ss_dssp CEECCSCS-----SCEEEEEEC-TTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred ceeccCCc-----CceEEEEEC-CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcC
Confidence 34567888 899999999 8999999999999999999974 35778889999999999997 3 789999999
Q ss_pred CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC-CCEEEEEEeCCCeEEEEECCCCCC-CeeeecccccceeEEEE
Q 035558 105 DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD-PRYMATIIMDSAKVVVLDIRFPTL-PVVELQRHQASVNAIAW 182 (253)
Q Consensus 105 dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~ 182 (253)
|++|++||+++++.. .+.....|...|.+++|+|.. +.+|++++.|+. |++||++.... ....+.+|...|.+++|
T Consensus 76 D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~-v~~wd~~~~~~~~~~~~~~h~~~v~~~~~ 153 (297)
T 2pm7_B 76 DGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGK-VSVVEFKENGTTSPIIIDAHAIGVNSASW 153 (297)
T ss_dssp TTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCSEEEEEETTSE-EEEEEBCSSSCBCCEEEECCSSCEEEEEE
T ss_pred CCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCcEEEEEECCCc-EEEEEecCCCceeeeeeecccCccceEee
Confidence 999999999876421 122234567799999999932 789999999998 99999987542 24567789999999999
Q ss_pred ecCC------------CCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC---CceEEEEcCCc
Q 035558 183 APHS------------SCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ---PDWVAIAFSTK 247 (253)
Q Consensus 183 ~~~~------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~ 247 (253)
+|++ .++|++|+.|++|++||++...... .....+.+|...|.+++|+|++ .++++++.|+.
T Consensus 154 ~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~---~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~ 230 (297)
T 2pm7_B 154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY---VLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT 230 (297)
T ss_dssp CCCC------------CCEEEEEETTSCEEEEEEETTTTEE---EEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred cCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE---EEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc
Confidence 9973 2589999999999999998765321 0113566899999999999985 67889999999
Q ss_pred EEEEEC
Q 035558 248 LQILRV 253 (253)
Q Consensus 248 i~vw~l 253 (253)
|++|++
T Consensus 231 v~iWd~ 236 (297)
T 2pm7_B 231 CIIWTQ 236 (297)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999974
No 44
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.7e-36 Score=232.46 Aligned_cols=225 Identities=16% Similarity=0.227 Sum_probs=195.9
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
++++|++++ + .|++|++..+ .......+..|. ..|.+++|+ ++++++++++.||.|++||+++++.+..+
T Consensus 108 ~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~-----~~i~~~~~~-~~~~~l~~~~~dg~v~~~d~~~~~~~~~~ 179 (337)
T 1gxr_A 108 DGCTLIVGGEASTLSIWDLAAP--TPRIKAELTSSA-----PACYALAIS-PDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179 (337)
T ss_dssp TSSEEEEEESSSEEEEEECCCC----EEEEEEECSS-----SCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCC--CcceeeecccCC-----CceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCceeeee
Confidence 566677766 5 9999999885 123566777888 889999999 79999999999999999999999999999
Q ss_pred ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558 82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160 (253)
Q Consensus 82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~ 160 (253)
..|...|.+++|+ +++.|++++.||.|++||+++++..... .+...+.+++|+| +++++++++.++. |++||+
T Consensus 180 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----~~~~~v~~~~~s~-~~~~l~~~~~~~~-i~~~~~ 253 (337)
T 1gxr_A 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH----DFTSQIFSLGYCP-TGEWLAVGMESSN-VEVLHV 253 (337)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE----ECSSCEEEEEECT-TSSEEEEEETTSC-EEEEET
T ss_pred ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee----cCCCceEEEEECC-CCCEEEEEcCCCc-EEEEEC
Confidence 9999999999999 9999999999999999999988644333 2445899999999 8999999999998 999999
Q ss_pred CCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE
Q 035558 161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 240 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 240 (253)
++.. ...+..|...|.+++|+|++ ++|++++.||.|++||+++++. .....|...+.+++|+|+++.++
T Consensus 254 ~~~~--~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~~--------~~~~~~~~~v~~~~~s~~~~~l~ 322 (337)
T 1gxr_A 254 NKPD--KYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGAS--------IFQSKESSSVLSCDISVDDKYIV 322 (337)
T ss_dssp TSSC--EEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE--------EEEEECSSCEEEEEECTTSCEEE
T ss_pred CCCC--eEEEcCCccceeEEEECCCC-CEEEEecCCCcEEEEECCCCeE--------EEEecCCCcEEEEEECCCCCEEE
Confidence 8754 56778899999999999999 6999999999999999988663 24456889999999999999999
Q ss_pred EEEcCCcEEEEEC
Q 035558 241 AIAFSTKLQILRV 253 (253)
Q Consensus 241 ~~~~~~~i~vw~l 253 (253)
+++.|+.+++|++
T Consensus 323 ~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 323 TGSGDKKATVYEV 335 (337)
T ss_dssp EEETTSCEEEEEE
T ss_pred EecCCCeEEEEEE
Confidence 9999999999985
No 45
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.3e-37 Score=248.58 Aligned_cols=239 Identities=16% Similarity=0.198 Sum_probs=183.9
Q ss_pred CCCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558 1 ECQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD 78 (253)
Q Consensus 1 sp~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 78 (253)
+|.++.+||+|+ | .|+|||+..+ .......+.+|. ++|++++|+|.++++|++|+.||+|++||++++...
T Consensus 128 ~P~~~~~lasGs~dg~i~lWd~~~~--~~~~~~~~~gH~-----~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~ 200 (435)
T 4e54_B 128 HPTHPSTVAVGSKGGDIMLWNFGIK--DKPTFIKGIGAG-----GSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR 200 (435)
T ss_dssp CSSCTTCEEEEETTSCEEEECSSCC--SCCEEECCCSSS-----CCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE
T ss_pred eCCCCCEEEEEeCCCEEEEEECCCC--CceeEEEccCCC-----CCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee
Confidence 477888999988 4 9999999874 123344567888 899999999668899999999999999999876543
Q ss_pred eeee--cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558 79 TQLI--AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV 155 (253)
Q Consensus 79 ~~~~--~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i 155 (253)
.... .+...+.+++|+ ++.+|++|+.||.|++||++... +.....|...|.+++|+|....++++++.|+. |
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~----~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~-v 275 (435)
T 4e54_B 201 VFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE----LWNLRMHKKKVTHVALNPCCDWFLATASVDQT-V 275 (435)
T ss_dssp EEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB----CCCSBCCSSCEEEEEECTTCSSEEEEEETTSB-C
T ss_pred EEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce----eEEEecccceEEeeeecCCCceEEEEecCcce-e
Confidence 3332 234567899999 99999999999999999997643 33445677899999999955568889999998 9
Q ss_pred EEEECCCCCC--CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCC--------------------
Q 035558 156 VVLDIRFPTL--PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEG-------------------- 213 (253)
Q Consensus 156 ~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------------- 213 (253)
++||+++... ......+|...|++++|+|++ .+|++++.||.|++||++++..+...
T Consensus 276 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (435)
T 4e54_B 276 KIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHP 354 (435)
T ss_dssp CEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECS
T ss_pred eEEecccccccceEEEeeeccccccceeECCCC-CeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcC
Confidence 9999987653 233446799999999999999 69999999999999999865421100
Q ss_pred ---------------------CCCC------------ee-eccCCCceeEE-EEcCCCCceEEEEcCCcEEEEEC
Q 035558 214 ---------------------GLDP------------IL-AYTAGAEIEQL-QWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 214 ---------------------~~~~------------~~-~~~~~~~v~~~-~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
.... .. ..+|...|.++ +|+|+++.| +++.|+.|+||++
T Consensus 355 ~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~l-asg~d~~i~iW~~ 428 (435)
T 4e54_B 355 RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTL-ASAMGYHILIWSQ 428 (435)
T ss_dssp SSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCE-EEECSSEEEECCC
T ss_pred CCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEE-EEEcCCcEEEEEC
Confidence 0000 01 12466677777 699999855 5566899999985
No 46
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.3e-36 Score=237.42 Aligned_cols=232 Identities=12% Similarity=0.185 Sum_probs=195.0
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
+++.+|++++ + .|++|++..+ ..+....+.+|. ..|.+++|+ +++++|++++.||.|++||+++++....
T Consensus 18 ~~~~~l~~~~~d~~v~i~~~~~~--~~~~~~~~~~h~-----~~v~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 89 (372)
T 1k8k_C 18 KDRTQIAICPNNHEVHIYEKSGN--KWVQVHELKEHN-----GQVTGVDWA-PDSNRIVTCGTDRNAYVWTLKGRTWKPT 89 (372)
T ss_dssp TTSSEEEEECSSSEEEEEEEETT--EEEEEEEEECCS-----SCEEEEEEE-TTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred CCCCEEEEEeCCCEEEEEeCCCC--cEEeeeeecCCC-----CcccEEEEe-CCCCEEEEEcCCCeEEEEECCCCeeeee
Confidence 3567888875 5 9999999885 122788888998 899999999 7999999999999999999988875443
Q ss_pred --eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeee-ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558 81 --LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIY-ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV 156 (253)
Q Consensus 81 --~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~ 156 (253)
+..|...|.+++|+ ++++|++++.|+.|++||++......... ....+...|.+++|+| +++++++++.++. |+
T Consensus 90 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~-i~ 167 (372)
T 1k8k_C 90 LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFK-CR 167 (372)
T ss_dssp EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSC-EE
T ss_pred EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEEEcCCCC-EE
Confidence 35789999999999 99999999999999999999887433322 2245567999999999 8999999999998 99
Q ss_pred EEECCC-----------------CCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCee
Q 035558 157 VLDIRF-----------------PTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPIL 219 (253)
Q Consensus 157 ~~d~~~-----------------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 219 (253)
+||++. ...++..+..|...|.+++|+|++ .+|++++.||.|++||+++++... .
T Consensus 168 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~-------~ 239 (372)
T 1k8k_C 168 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAVA-------T 239 (372)
T ss_dssp EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTEEE-------E
T ss_pred EEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCceeE-------E
Confidence 999742 123467778899999999999999 699999999999999999876443 6
Q ss_pred eccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 220 AYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 220 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
...|..+|.+++|+|++. +++++.|+.+++|++
T Consensus 240 ~~~~~~~v~~~~~~~~~~-~l~~~~d~~i~i~~~ 272 (372)
T 1k8k_C 240 LASETLPLLAVTFITESS-LVAAGHDCFPVLFTY 272 (372)
T ss_dssp EECSSCCEEEEEEEETTE-EEEEETTSSCEEEEE
T ss_pred EccCCCCeEEEEEecCCC-EEEEEeCCeEEEEEc
Confidence 668889999999999997 555669999999984
No 47
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.9e-37 Score=248.14 Aligned_cols=210 Identities=15% Similarity=0.228 Sum_probs=176.2
Q ss_pred eeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee--eeeeecccccEEEEEec--CCCeEEEEeCC
Q 035558 30 KSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV--DTQLIAHDKEVYDIAWG--GVGVFASVSAD 105 (253)
Q Consensus 30 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~--~~~~l~~~~~d 105 (253)
.....+|. ..|++|+|+|.++++||+|+.||.|+|||+.+++. ...+.+|.+.|++|+|+ ++++|++++.|
T Consensus 112 ~~~~~~~~-----~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D 186 (435)
T 4e54_B 112 LQKAAPFD-----RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME 186 (435)
T ss_dssp CCEEEECS-----SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS
T ss_pred cccCCCCC-----CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC
Confidence 33444565 78999999976788999999999999999987653 34456899999999999 68899999999
Q ss_pred CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecC
Q 035558 106 GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPH 185 (253)
Q Consensus 106 g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~ 185 (253)
|+|++||+++.. ...+.........+.+++|+| ++.+|++|+.++. |++||++.. .+..+.+|...|++++|+|+
T Consensus 187 ~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~-i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~ 261 (435)
T 4e54_B 187 GTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGN-VILLNMDGK--ELWNLRMHKKKVTHVALNPC 261 (435)
T ss_dssp SCEEEEETTSCE-EEEEECCSSCSCCCCCEEEET-TTTEEEEECSSSB-EEEEESSSC--BCCCSBCCSSCEEEEEECTT
T ss_pred CEEEEeeccCCc-eeEEeccCCCCccEEEEEECC-CCCEEEEEeCCCc-EeeeccCcc--eeEEEecccceEEeeeecCC
Confidence 999999998654 233444444555788999999 9999999999998 999999753 46788899999999999999
Q ss_pred CCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 186 SSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 186 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
++.+|++|+.|+.|++||++...... ......+|..+|++++|+|++.+|++++.|+.|++|++
T Consensus 262 ~~~~~~s~s~d~~v~iwd~~~~~~~~----~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~ 325 (435)
T 4e54_B 262 CDWFLATASVDQTVKIWDLRQVRGKA----SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSA 325 (435)
T ss_dssp CSSEEEEEETTSBCCEEETTTCCSSS----CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEES
T ss_pred CceEEEEecCcceeeEEecccccccc----eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEEC
Confidence 86688999999999999998876432 12244679999999999999999999999999999985
No 48
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-36 Score=242.60 Aligned_cols=237 Identities=17% Similarity=0.303 Sum_probs=195.5
Q ss_pred CCCCCceEEee----------c-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEE
Q 035558 1 ECQKPDLLATS----------S-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCT 68 (253)
Q Consensus 1 sp~~~~~l~~~----------~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 68 (253)
+|+...+|+++ + + .|++|++..+ ...+....+ .|. ..|++++|+ +++++|++|+.||.|+
T Consensus 21 sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~-~~~~~~~~~-~~~-----~~v~~~~~s-~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 21 SHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAA-DSEKPIASL-QVD-----SKFNDLDWS-HNNKIIAGALDNGSLE 92 (416)
T ss_dssp CSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSG-GGCSCSCCC-CCS-----SCEEEEEEC-SSSSCEEEEESSSCEE
T ss_pred CCCCCCEEEEEecCcccccccCCCCeEEEEEccCC-CCCcEEEEE-ecC-----CceEEEEEC-CCCCeEEEEccCCeEE
Confidence 45555588888 5 4 9999999875 111233333 455 789999999 8999999999999999
Q ss_pred EEeccC----ceeeeeeecccccEEEEEec-C-CCeEEEEeCCCcEEEEEcCCCC------CeeeeeccCCCCCCeeEEE
Q 035558 69 IWDIER----EAVDTQLIAHDKEVYDIAWG-G-VGVFASVSADGSVRVFDLRDKE------HSTIIYESSEPDTPLVRLG 136 (253)
Q Consensus 69 vwd~~~----~~~~~~~~~~~~~v~~~~~~-~-~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~~~i~~~~ 136 (253)
+||+.. .+.+..+.+|...|.+++|+ + +++|++++.||.|++||+++.+ ..........+...|.+++
T Consensus 93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 172 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA 172 (416)
T ss_dssp EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence 999987 35777888999999999999 6 8999999999999999999876 3333333456777999999
Q ss_pred eeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccc------ccceeEEEEecCCCCeEEEecCCC---cEEEEeccCC
Q 035558 137 WNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRH------QASVNAIAWAPHSSCHICTAGDDS---QALIWDLSSM 207 (253)
Q Consensus 137 ~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~ 207 (253)
|+|..+.++++++.++. |++||+++.+ ++..+..+ ...|.+++|+|++..+|++++.|+ .|++||+++.
T Consensus 173 ~~~~~~~~l~~~~~dg~-v~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 173 WNQSLAHVFASAGSSNF-ASIWDLKAKK-EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp ECSSCTTEEEEESSSSC-EEEEETTTTE-EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred eCCCCCcEEEEEcCCCC-EEEEECCCCC-cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence 99944889999999998 9999999865 36666655 788999999999866899999999 9999999987
Q ss_pred CCCCCCCCCCeeec-cCCCceeEEEEcC-CCCceEEEEcCCcEEEEEC
Q 035558 208 GQPVEGGLDPILAY-TAGAEIEQLQWSS-SQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 208 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~~~~~~~~~~i~vw~l 253 (253)
..+. .... +|...|.+++|+| ++..+++++.|+.|++|++
T Consensus 251 ~~~~------~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~ 292 (416)
T 2pm9_A 251 NTPL------QTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP 292 (416)
T ss_dssp TSCS------BCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECS
T ss_pred CCCc------EEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeC
Confidence 5443 3455 7999999999999 8888899999999999985
No 49
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.2e-36 Score=241.38 Aligned_cols=233 Identities=18% Similarity=0.286 Sum_probs=191.0
Q ss_pred ceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-------e
Q 035558 6 DLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-------A 76 (253)
Q Consensus 6 ~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-------~ 76 (253)
.++++++ + .|+||++............+.+|. ..|++++|+|.++++|++|+.||.|++||+.++ +
T Consensus 48 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~-----~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~ 122 (402)
T 2aq5_A 48 ALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHT-----APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLRE 122 (402)
T ss_dssp EEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCS-----SCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCS
T ss_pred EEEEEEcCCCEEEEEECccCCCCCCCCceEecCC-----CCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCC
Confidence 3444444 5 999999976423334566778898 899999999438999999999999999999887 5
Q ss_pred eeeeeecccccEEEEEec-CC-CeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCe
Q 035558 77 VDTQLIAHDKEVYDIAWG-GV-GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAK 154 (253)
Q Consensus 77 ~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~ 154 (253)
.+..+.+|...|.+++|+ ++ ++|++++.||.|++||+++++....+. ...+...|.+++|+| ++.+|++++.|+.
T Consensus 123 ~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~~~~~d~~- 199 (402)
T 2aq5_A 123 PVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG-PDVHPDTIYSVDWSR-DGALICTSCRDKR- 199 (402)
T ss_dssp CSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC-TTTCCSCEEEEEECT-TSSCEEEEETTSE-
T ss_pred ceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe-cCCCCCceEEEEECC-CCCEEEEEecCCc-
Confidence 677888999999999999 76 699999999999999999886433221 145677999999999 9999999999998
Q ss_pred EEEEECCCCCCCeeee-cccccc-eeEEEEecCCCCeEEEe---cCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeE
Q 035558 155 VVVLDIRFPTLPVVEL-QRHQAS-VNAIAWAPHSSCHICTA---GDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQ 229 (253)
Q Consensus 155 i~~~d~~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~ 229 (253)
|++||+++... +..+ ..|... +.+++|+|++ .+|++| +.|+.|++||+++...+. ......|...+.+
T Consensus 200 i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~v~~ 272 (402)
T 2aq5_A 200 VRVIEPRKGTV-VAEKDRPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEPL-----SLQELDTSSGVLL 272 (402)
T ss_dssp EEEEETTTTEE-EEEEECSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSCS-----EEEECCCCSSCEE
T ss_pred EEEEeCCCCce-eeeeccCCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCCc-----eEEeccCCCceeE
Confidence 99999998653 6666 677765 8999999998 689998 899999999999877543 1233467888999
Q ss_pred EEEcCCCCceEEEE-cCCcEEEEEC
Q 035558 230 LQWSSSQPDWVAIA-FSTKLQILRV 253 (253)
Q Consensus 230 ~~~~~~~~~~~~~~-~~~~i~vw~l 253 (253)
++|+|+++.+++++ .|+.|++|++
T Consensus 273 ~~~s~~~~~l~~~g~~dg~i~i~d~ 297 (402)
T 2aq5_A 273 PFFDPDTNIVYLCGKGDSSIRYFEI 297 (402)
T ss_dssp EEEETTTTEEEEEETTCSCEEEEEE
T ss_pred EEEcCCCCEEEEEEcCCCeEEEEEe
Confidence 99999999876555 6999999984
No 50
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.3e-35 Score=227.87 Aligned_cols=225 Identities=20% Similarity=0.326 Sum_probs=183.6
Q ss_pred ceEEeecC-cEEEEEccCCccccceeeeec--CCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558 6 DLLATSSD-FLRVWRISDEDRRVELKSLLN--GNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI 82 (253)
Q Consensus 6 ~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 82 (253)
++||+|.| +|+|||+.++ ++...++ +|. ..|++++|+ +++++|++|+.||+|++||+++++.+..+.
T Consensus 37 ~~lAvg~D~tV~iWd~~tg----~~~~~~~~~~~~-----~~V~~v~~~-~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~ 106 (318)
T 4ggc_A 37 NVLAVALDNSVYLWSASSG----DILQLLQMEQPG-----EYISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRLRNMT 106 (318)
T ss_dssp SEEEEEETTEEEEEETTTC----CEEEEEECCSTT-----CCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CEEEEEeCCEEEEEECCCC----CEEEEEEecCCC-----CeEEEEEEC-CCCCEEEEEECCCcEEEeecCCceeEEEec
Confidence 47888888 9999999987 6666655 455 789999999 899999999999999999999999999999
Q ss_pred cccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCC
Q 035558 83 AHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF 162 (253)
Q Consensus 83 ~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~ 162 (253)
+|...+.++.+ ++..+++++.++.+++|+....... +.....+...+..+.+++ +++++++++.|+. |++||+++
T Consensus 107 ~h~~~~~~~~~-~~~~l~s~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~-i~iwd~~~ 181 (318)
T 4ggc_A 107 SHSARVGSLSW-NSYILSSGSRSGHIHHHDVRVAEHH--VATLSGHSQEVCGLRWAP-DGRHLASGGNDNL-VNVWPSAP 181 (318)
T ss_dssp CCSSCEEEEEE-ETTEEEEEETTSEEEEEETTSSSCE--EEEEECCSSCEEEEEECT-TSSEEEEEETTSC-EEEEESSC
T ss_pred CccceEEEeec-CCCEEEEEecCCceEeeecCCCcee--EEEEcCccCceEEEEEcC-CCCEEEEEecCcc-eeEEECCC
Confidence 99998877665 5789999999999999999877643 333346667899999999 8999999999998 99999976
Q ss_pred CCCC---eeee--------------------------------------------cccccceeEEEEecCCCCeEEE--e
Q 035558 163 PTLP---VVEL--------------------------------------------QRHQASVNAIAWAPHSSCHICT--A 193 (253)
Q Consensus 163 ~~~~---~~~~--------------------------------------------~~~~~~i~~~~~~~~~~~~l~~--~ 193 (253)
.+.. .... ..+...+..+.|+|++. .+++ |
T Consensus 182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~sg 260 (318)
T 4ggc_A 182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK-ELISGHG 260 (318)
T ss_dssp BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTT-EEEEEEC
T ss_pred CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeeccccc-ceEEEEE
Confidence 4310 1111 11234566777888774 5544 4
Q ss_pred cCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 194 GDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 194 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
+.|+.|++||+++++... .+.+|..+|++++|+|++++|++++.|+.|+||++
T Consensus 261 ~~d~~i~iwd~~~~~~~~-------~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 261 FAQNQLVIWKYPTMAKVA-------ELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp TTTCCEEEEETTTCCEEE-------EECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred cCCCEEEEEECCCCcEEE-------EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 479999999999876543 67789999999999999999999999999999986
No 51
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.4e-35 Score=238.12 Aligned_cols=234 Identities=21% Similarity=0.322 Sum_probs=192.6
Q ss_pred CceEEeecC-cEEEEEccCCccccceeeeec--CCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 5 PDLLATSSD-FLRVWRISDEDRRVELKSLLN--GNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
+++||+|.| +|+|||..++ +....++ +|. ..|++|+|+ +++++|++|+.||.|++||+++++.+..+
T Consensus 116 ~n~lAvgld~tV~lWd~~tg----~~~~~~~~~~~~-----~~V~sv~fs-pdg~~lasgs~Dg~v~iWd~~~~~~~~~~ 185 (420)
T 4gga_A 116 GNVLAVALDNSVYLWSASSG----DILQLLQMEQPG-----EYISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRLRNM 185 (420)
T ss_dssp TSEEEEEETTEEEEEETTTC----CEEEEEECCSTT-----CCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CCEEEEEeCCEEEEEECCCC----CEEEEEEecCCC-----CcEEEEEEC-CCCCEEEEEECCCeEEEEEcCCCcEEEEE
Confidence 458888888 9999999987 6665554 555 789999999 89999999999999999999999999999
Q ss_pred ecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558 82 IAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR 161 (253)
Q Consensus 82 ~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~ 161 (253)
.+|...+.++++ ++..+++|+.|+.+++||.+..... +.....|...+..+.|+| ++.++++++.|+. +++||..
T Consensus 186 ~~h~~~v~~~s~-~~~~l~sgs~d~~i~~~d~~~~~~~--~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~-v~i~~~~ 260 (420)
T 4gga_A 186 TSHSARVGSLSW-NSYILSSGSRSGHIHHHDVRVAEHH--VATLSGHSQEVCGLRWAP-DGRHLASGGNDNL-VNVWPSA 260 (420)
T ss_dssp CCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTSSSCE--EEEEECCSSCEEEEEECT-TSSEEEEEETTSC-EEEEESS
T ss_pred eCCCCceEEEee-CCCEEEEEeCCCceeEeeeccccee--eEEecccccceeeeeecC-CCCeeeeeecccc-ceEEeec
Confidence 999999998888 5789999999999999999876643 333346677999999999 9999999999999 9999998
Q ss_pred CCCC---CeeeecccccceeEEEEecCCCCeEEE--ecCCCcEEEEeccCCCCCC-------------------------
Q 035558 162 FPTL---PVVELQRHQASVNAIAWAPHSSCHICT--AGDDSQALIWDLSSMGQPV------------------------- 211 (253)
Q Consensus 162 ~~~~---~~~~~~~~~~~i~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~------------------------- 211 (253)
.... .+.....|...|.+++|+|.+..++++ |+.|++|++||+.++....
T Consensus 261 ~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg 340 (420)
T 4gga_A 261 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHG 340 (420)
T ss_dssp CCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEEC
T ss_pred cccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEe
Confidence 7542 355667788889999999987666655 4578888888887654110
Q ss_pred -----------CCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 212 -----------EGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 212 -----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
........+.+|..+|++++|+|+++.|++++.|+.|++|++
T Consensus 341 ~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 341 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 000112345689999999999999999999999999999986
No 52
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=243.67 Aligned_cols=237 Identities=16% Similarity=0.345 Sum_probs=195.6
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce----
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---- 76 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---- 76 (253)
+++.+|++++ + .|++|++.......+....+.+|. ..|.+++|+|.++++|++++.||.|++||+.+++
T Consensus 77 ~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 151 (416)
T 2pm9_A 77 HNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHS-----SSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPS 151 (416)
T ss_dssp SSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSS-----SCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTT
T ss_pred CCCCeEEEEccCCeEEEeecccccccccchhhccCCc-----cceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccc
Confidence 3566777776 5 999999987322235778888898 8999999993338999999999999999998876
Q ss_pred --eeee---eecccccEEEEEec-C-CCeEEEEeCCCcEEEEEcCCCCCeeeeeccC---CCCCCeeEEEeeCCCCCEEE
Q 035558 77 --VDTQ---LIAHDKEVYDIAWG-G-VGVFASVSADGSVRVFDLRDKEHSTIIYESS---EPDTPLVRLGWNKQDPRYMA 146 (253)
Q Consensus 77 --~~~~---~~~~~~~v~~~~~~-~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~ 146 (253)
.... +..|...|.+++|+ + +.+|++++.||.|++||+++.+....+.... .+...+.+++|+|....+++
T Consensus 152 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (416)
T 2pm9_A 152 NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA 231 (416)
T ss_dssp TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred cccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence 3322 35789999999999 6 7899999999999999999886444333221 12568999999994457899
Q ss_pred EEEeCC---CeEEEEECCCCCCCeeeec-ccccceeEEEEec-CCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeec
Q 035558 147 TIIMDS---AKVVVLDIRFPTLPVVELQ-RHQASVNAIAWAP-HSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAY 221 (253)
Q Consensus 147 ~~~~~~---~~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 221 (253)
+++.++ . |++||+++...++..+. +|...|.+++|+| ++ .+|++++.||.|++||+++++.. ..+.
T Consensus 232 ~~~~d~~~~~-i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v~~wd~~~~~~~-------~~~~ 302 (416)
T 2pm9_A 232 TATGSDNDPS-ILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDE-HLLLSSGRDNTVLLWNPESAEQL-------SQFP 302 (416)
T ss_dssp EEECCSSSCC-CCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCS-SCEEEEESSSEEEEECSSSCCEE-------EEEE
T ss_pred EEECCCCCce-EEEEeCCCCCCCcEEeecCccCceeEEEeCCCCC-CeEEEEeCCCCEEEeeCCCCccc-------eeec
Confidence 999887 7 99999998766678888 8999999999999 66 79999999999999999987643 3667
Q ss_pred cCCCceeEEEEcCCC-CceEEEEcCCcEEEEEC
Q 035558 222 TAGAEIEQLQWSSSQ-PDWVAIAFSTKLQILRV 253 (253)
Q Consensus 222 ~~~~~v~~~~~~~~~-~~~~~~~~~~~i~vw~l 253 (253)
.|...|.+++|+|++ ..+++++.|+.|++|++
T Consensus 303 ~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~ 335 (416)
T 2pm9_A 303 ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTL 335 (416)
T ss_dssp CSSSCCCCEEECTTCTTEEEECCSSSEEEEEES
T ss_pred CCCCceEEEEECCCCCCEEEEEecCCcEEEEEc
Confidence 899999999999998 67778899999999985
No 53
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-37 Score=250.01 Aligned_cols=238 Identities=13% Similarity=0.099 Sum_probs=181.5
Q ss_pred CCceEEeec-C-cEEEEEccCCccc-------cceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRR-------VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER 74 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 74 (253)
++.+||+++ | +|++||+..+... .++...+.+|. ..|++++|+ ++ ..|++|+.||+|++||+++
T Consensus 224 ~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~-----~~v~sv~~s-~~-~~lasgs~DgtV~lWD~~~ 296 (524)
T 2j04_B 224 LVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD-----SLITTFDFL-SP-TTVVCGFKNGFVAEFDLTD 296 (524)
T ss_dssp SSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT-----TCEEEEEES-SS-SEEEEEETTSEEEEEETTB
T ss_pred CCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCC-----CCEEEEEec-CC-CeEEEEeCCCEEEEEECCC
Confidence 467888887 5 9999999764111 11234677888 899999999 43 5899999999999999987
Q ss_pred ce-eeeeeecccccEEEE--Eec-CC-CeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE
Q 035558 75 EA-VDTQLIAHDKEVYDI--AWG-GV-GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII 149 (253)
Q Consensus 75 ~~-~~~~~~~~~~~v~~~--~~~-~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 149 (253)
++ ....+.+|...|.++ .|+ ++ .+|++++.|++|++||+++.+....+.... ....|.+++|+| ++..+++++
T Consensus 297 ~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~-~~~~v~~v~fsp-~~~~l~s~~ 374 (524)
T 2j04_B 297 PEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF-RGSNLVPVVYCP-QIYSYIYSD 374 (524)
T ss_dssp CSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC-SCCSCCCEEEET-TTTEEEEEC
T ss_pred CCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc-ccCcccceEeCC-CcCeEEEeC
Confidence 64 455688999999999 456 66 899999999999999999876544333211 112578999999 888999999
Q ss_pred eCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC------------------
Q 035558 150 MDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV------------------ 211 (253)
Q Consensus 150 ~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------------------ 211 (253)
.++. |++||+++... +..+.+|...|++++|+|++ .+|++|+.||+|++||+.......
T Consensus 375 ~d~t-v~lwd~~~~~~-~~~l~gH~~~V~sva~Sp~g-~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~ 451 (524)
T 2j04_B 375 GASS-LRAVPSRAAFA-VHPLVSRETTITAIGVSRLH-PMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDY 451 (524)
T ss_dssp SSSE-EEEEETTCTTC-CEEEEECSSCEEEEECCSSC-CBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBC
T ss_pred CCCc-EEEEECccccc-ceeeecCCCceEEEEeCCCC-CeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEecc
Confidence 8887 99999998664 67788899999999999999 599999999999999975321000
Q ss_pred -C------------------CCCCCeeeccCCCceeEEEEcCCCC---ceEEEEcCCcEEEEEC
Q 035558 212 -E------------------GGLDPILAYTAGAEIEQLQWSSSQP---DWVAIAFSTKLQILRV 253 (253)
Q Consensus 212 -~------------------~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~i~vw~l 253 (253)
. .......+.+|..+|.+|+|+|+++ .+++++.++.|+||++
T Consensus 452 sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l 515 (524)
T 2j04_B 452 SIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYL 515 (524)
T ss_dssp CSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEEC
T ss_pred CCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEc
Confidence 0 0111234557889999999999964 5667777899999986
No 54
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.9e-35 Score=228.89 Aligned_cols=228 Identities=15% Similarity=0.196 Sum_probs=192.6
Q ss_pred CCCceEEeecC-cEEEEEccCCccccceeeeec--CCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce--e
Q 035558 3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLN--GNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA--V 77 (253)
Q Consensus 3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~ 77 (253)
+++.+|+++++ .|++|++..+ ........+. +|. ..|.+++|+ +++++|++++.||.|++||+++++ .
T Consensus 61 ~~~~~l~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~-----~~v~~~~~~-~~~~~l~~~~~d~~i~~~d~~~~~~~~ 133 (337)
T 1gxr_A 61 NPTRHVYTGGKGCVKVWDISHP-GNKSPVSQLDCLNRD-----NYIRSCKLL-PDGCTLIVGGEASTLSIWDLAAPTPRI 133 (337)
T ss_dssp SSSSEEEEECBSEEEEEETTST-TCCSCSEEEECSCTT-----SBEEEEEEC-TTSSEEEEEESSSEEEEEECCCC--EE
T ss_pred cCCcEEEEcCCCeEEEEECCCC-CceeeeecccccCCC-----CcEEEEEEc-CCCCEEEEEcCCCcEEEEECCCCCcce
Confidence 46778888888 9999999875 2222333333 566 899999999 799999999999999999999877 5
Q ss_pred eeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558 78 DTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV 156 (253)
Q Consensus 78 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~ 156 (253)
...+..|...|.+++|+ +++++++++.||.|++||+++++... ....+...+.+++|+| +++++++++.++. |+
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~---~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~-i~ 208 (337)
T 1gxr_A 134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR---QFQGHTDGASCIDISN-DGTKLWTGGLDNT-VR 208 (337)
T ss_dssp EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECT-TSSEEEEEETTSE-EE
T ss_pred eeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceee---eeecccCceEEEEECC-CCCEEEEEecCCc-EE
Confidence 66777899999999999 99999999999999999999876333 3345667999999999 8999999999998 99
Q ss_pred EEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC
Q 035558 157 VLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ 236 (253)
Q Consensus 157 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 236 (253)
+||+++.+. +..+ .+...+.+++|+|++ .+|++++.|+.|++||++.... .....|..+|.+++|+|++
T Consensus 209 ~~d~~~~~~-~~~~-~~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~ 277 (337)
T 1gxr_A 209 SWDLREGRQ-LQQH-DFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDK--------YQLHLHESCVLSLKFAYCG 277 (337)
T ss_dssp EEETTTTEE-EEEE-ECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSCE--------EEECCCSSCEEEEEECTTS
T ss_pred EEECCCCce-Eeee-cCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCCe--------EEEcCCccceeEEEECCCC
Confidence 999987653 4444 477889999999999 6999999999999999988652 3567899999999999999
Q ss_pred CceEEEEcCCcEEEEEC
Q 035558 237 PDWVAIAFSTKLQILRV 253 (253)
Q Consensus 237 ~~~~~~~~~~~i~vw~l 253 (253)
+.+++++.|+.+++|++
T Consensus 278 ~~l~~~~~dg~i~~~~~ 294 (337)
T 1gxr_A 278 KWFVSTGKDNLLNAWRT 294 (337)
T ss_dssp SEEEEEETTSEEEEEET
T ss_pred CEEEEecCCCcEEEEEC
Confidence 99999999999999985
No 55
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-35 Score=236.16 Aligned_cols=226 Identities=22% Similarity=0.363 Sum_probs=191.7
Q ss_pred CCceEEeecC-cEEEEEccCCccccceeeeecC-CCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNG-NKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
.+.+++++.+ .|++|++.++ +....+.. |. ..|++++|+ +++++|++|+.||.|++||+++++.+..+
T Consensus 103 ~~~l~~~~~d~~v~lw~~~~~----~~~~~~~~~~~-----~~v~~v~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 172 (401)
T 4aez_A 103 NLNVVAVALERNVYVWNADSG----SVSALAETDES-----TYVASVKWS-HDGSFLSVGLGNGLVDIYDVESQTKLRTM 172 (401)
T ss_dssp TTSEEEEEETTEEEEEETTTC----CEEEEEECCTT-----CCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred CCCEEEEECCCeEEEeeCCCC----cEeEeeecCCC-----CCEEEEEEC-CCCCEEEEECCCCeEEEEECcCCeEEEEe
Confidence 3456666667 9999999987 55555554 56 789999999 79999999999999999999999999999
Q ss_pred ecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558 82 IAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR 161 (253)
Q Consensus 82 ~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~ 161 (253)
.+|...|.+++| +++.+++++.||.|++||++.... .......+...|.+++|+| ++.+|++++.|+. |++||++
T Consensus 173 ~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~-v~iwd~~ 247 (401)
T 4aez_A 173 AGHQARVGCLSW-NRHVLSSGSRSGAIHHHDVRIANH--QIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNV-VQIWDAR 247 (401)
T ss_dssp CCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTSSSC--EEEEEECCSSCEEEEEECT-TSSEEEEEETTSC-EEEEETT
T ss_pred cCCCCceEEEEE-CCCEEEEEcCCCCEEEEecccCcc--eeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCe-EEEccCC
Confidence 999999999999 578999999999999999996543 2333345677999999999 9999999999998 9999999
Q ss_pred CCCCCeeeecccccceeEEEEecCCCCeEEEec--CCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558 162 FPTLPVVELQRHQASVNAIAWAPHSSCHICTAG--DDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW 239 (253)
Q Consensus 162 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 239 (253)
+.. ++..+..|...|.+++|+|++..++++++ .|+.|++||++++... ....+...|.+++|+|+++.+
T Consensus 248 ~~~-~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~--------~~~~~~~~v~~~~~s~~~~~l 318 (401)
T 4aez_A 248 SSI-PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV--------NTVDAGSQVTSLIWSPHSKEI 318 (401)
T ss_dssp CSS-EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE--------EEEECSSCEEEEEECSSSSEE
T ss_pred CCC-ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE--------EEEeCCCcEEEEEECCCCCeE
Confidence 855 47788889999999999998866778765 8999999999986532 344577899999999999988
Q ss_pred EEEE--cCCcEEEEEC
Q 035558 240 VAIA--FSTKLQILRV 253 (253)
Q Consensus 240 ~~~~--~~~~i~vw~l 253 (253)
++++ .|+.+++|++
T Consensus 319 ~~~~g~~dg~i~v~~~ 334 (401)
T 4aez_A 319 MSTHGFPDNNLSIWSY 334 (401)
T ss_dssp EEEECTTTCEEEEEEE
T ss_pred EEEeecCCCcEEEEec
Confidence 8754 7999999984
No 56
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=5.4e-35 Score=232.98 Aligned_cols=237 Identities=16% Similarity=0.259 Sum_probs=192.1
Q ss_pred CCCCCceEEeec-C-cEEEEEccCCccccceeeee-------------cCCCCccccCCeeEEEecCCCCCEEEEEeCCC
Q 035558 1 ECQKPDLLATSS-D-FLRVWRISDEDRRVELKSLL-------------NGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT 65 (253)
Q Consensus 1 sp~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 65 (253)
+|.++.+|++++ + .|++|++... .....+ .+|. ..|.+++|+|.++.+|++++.||
T Consensus 52 s~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~s~~~d~ 122 (408)
T 4a11_B 52 EPVEGRYMLSGGSDGVIVLYDLENS----SRQSYYTCKAVCSIGRDHPDVHR-----YSVETVQWYPHDTGMFTSSSFDK 122 (408)
T ss_dssp CTTTCCEEEEEETTSCEEEEECCCC----SSSSCEEECEEEEECTTCTTCCS-----SCEEEEEECTTCTTCEEEEETTS
T ss_pred ecCCCCEEEEEcCCCeEEEEECCCC----cccceEeccccccccccccccCC-----CcEEEEEEccCCCcEEEEEeCCC
Confidence 354788888887 5 9999999886 222222 2466 89999999954888999999999
Q ss_pred eEEEEeccCceeeeeeecccccEEEEEec-C---CCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC
Q 035558 66 TCTIWDIEREAVDTQLIAHDKEVYDIAWG-G---VGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD 141 (253)
Q Consensus 66 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 141 (253)
.|++||+.+++....+. +...+.++.++ . +.++++++.||.|++||+++++....+ ..+...|.+++|+| +
T Consensus 123 ~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~---~~~~~~v~~~~~~~-~ 197 (408)
T 4a11_B 123 TLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL---QGHRQEILAVSWSP-R 197 (408)
T ss_dssp EEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE---CCCCSCEEEEEECS-S
T ss_pred eEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee---cCCCCcEEEEEECC-C
Confidence 99999999998887776 77889999998 3 349999999999999999988754433 45667999999999 5
Q ss_pred CC-EEEEEEeCCCeEEEEECCCCCCCeeee---------------cccccceeEEEEecCCCCeEEEecCCCcEEEEecc
Q 035558 142 PR-YMATIIMDSAKVVVLDIRFPTLPVVEL---------------QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLS 205 (253)
Q Consensus 142 ~~-~l~~~~~~~~~i~~~d~~~~~~~~~~~---------------~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 205 (253)
+. ++++++.++. |++||+++...++..+ ..|...|.+++|+|++ .+|++++.||.|++||+.
T Consensus 198 ~~~ll~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~ 275 (408)
T 4a11_B 198 YDYILATASADSR-VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWNSS 275 (408)
T ss_dssp CTTEEEEEETTSC-EEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEETT
T ss_pred CCcEEEEEcCCCc-EEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC-CEEEEecCCCeEEEEECC
Confidence 55 6889999998 9999998866444444 5788999999999998 699999999999999998
Q ss_pred CCCCCCCC----------------------------------------CCCCeeeccCCCceeEEEEcCCCCceEEEEcC
Q 035558 206 SMGQPVEG----------------------------------------GLDPILAYTAGAEIEQLQWSSSQPDWVAIAFS 245 (253)
Q Consensus 206 ~~~~~~~~----------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 245 (253)
++...... ......+.+|...|++++|+|+++.+++++.|
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 355 (408)
T 4a11_B 276 NGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRD 355 (408)
T ss_dssp TCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred CCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCC
Confidence 86532210 01122345689999999999999999999999
Q ss_pred CcEEEEEC
Q 035558 246 TKLQILRV 253 (253)
Q Consensus 246 ~~i~vw~l 253 (253)
+.|++|++
T Consensus 356 g~i~iw~~ 363 (408)
T 4a11_B 356 CNILAWVP 363 (408)
T ss_dssp SCEEEEEE
T ss_pred CeEEEEeC
Confidence 99999984
No 57
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-35 Score=230.56 Aligned_cols=236 Identities=15% Similarity=0.224 Sum_probs=197.9
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
++.+|++++ + .|++||+.++ +....+.+|. ..|.+++|+ +++++|++++.||.|++||+.+++.+..+
T Consensus 43 ~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~h~-----~~v~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 112 (369)
T 3zwl_B 43 EGDLLFSCSKDSSASVWYSLNG----ERLGTLDGHT-----GTIWSIDVD-CFTKYCVTGSADYSIKLWDVSNGQCVATW 112 (369)
T ss_dssp TSCEEEEEESSSCEEEEETTTC----CEEEEECCCS-----SCEEEEEEC-TTSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred CCCEEEEEeCCCEEEEEeCCCc----hhhhhhhhcC-----CcEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 567777776 5 9999999887 8888999998 899999999 79999999999999999999999988888
Q ss_pred ecccccEEEEEec-CCCeEEEEeCC-----CcEEEEEcCCCCCeeeee--------ccCCCCC--CeeEEEeeCCCCCEE
Q 035558 82 IAHDKEVYDIAWG-GVGVFASVSAD-----GSVRVFDLRDKEHSTIIY--------ESSEPDT--PLVRLGWNKQDPRYM 145 (253)
Q Consensus 82 ~~~~~~v~~~~~~-~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~--------~~~~~~~--~i~~~~~~~~~~~~l 145 (253)
. +...|.+++|+ ++.++++++.+ +.|++||++.......+. ....+.. .+.+++|+| +++++
T Consensus 113 ~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l 190 (369)
T 3zwl_B 113 K-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYI 190 (369)
T ss_dssp E-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEE
T ss_pred e-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC-CCCEE
Confidence 7 88999999999 99999999999 999999998765322111 1112223 899999999 89999
Q ss_pred EEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCC------------
Q 035558 146 ATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEG------------ 213 (253)
Q Consensus 146 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------------ 213 (253)
++++.++. |++||+++...++..+..|...|.+++|+|++ .+|++++.||.|++||+++.......
T Consensus 191 ~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 268 (369)
T 3zwl_B 191 IAGHKDGK-ISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVIT 268 (369)
T ss_dssp EEEETTSE-EEEEETTTTTEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC
T ss_pred EEEcCCCE-EEEEECCCCcEeEEEEecCCCceeEEEECCCC-CEEEEecCCceEEEEECCCCceeeeecCCCCceeEEec
Confidence 99999998 99999998555688888899999999999998 69999999999999999876522100
Q ss_pred ------------------------------------CCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 214 ------------------------------------GLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 214 ------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
........+|...|.+++|+|+++.+++++.|+.|++|++
T Consensus 269 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 344 (369)
T 3zwl_B 269 PLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHF 344 (369)
T ss_dssp SSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred CCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 0001233468899999999999999999999999999985
No 58
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=9.9e-36 Score=236.81 Aligned_cols=232 Identities=13% Similarity=0.195 Sum_probs=189.3
Q ss_pred ceEEeec-C-cEEEEEccCCccccce-----eeeecCCCCccccCCeeEEEecC---CCCCE-EEEEeCCCeEEEEeccC
Q 035558 6 DLLATSS-D-FLRVWRISDEDRRVEL-----KSLLNGNKNSEYCGPLTSFDWNE---AEPRR-IGTSSIDTTCTIWDIER 74 (253)
Q Consensus 6 ~~l~~~~-~-~v~iw~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~---~~~~~-l~~~~~dg~i~vwd~~~ 74 (253)
.+|++++ + .|++|++..+ +. ...+..|........|.+++|++ +++++ |++++.||.|++||+++
T Consensus 82 ~~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 82 CLVATTSFSGDLLFYRITRE----DETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp EEEEEEETTSCEEEEEEEEC----TTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred cEEEEEcCCCCEEEEEccCC----cccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 7888877 5 9999999886 44 67777772100017899999993 36778 99999999999999998
Q ss_pred ------ceeee-----eee-------cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCC---CCCe
Q 035558 75 ------EAVDT-----QLI-------AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEP---DTPL 132 (253)
Q Consensus 75 ------~~~~~-----~~~-------~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~i 132 (253)
++.+. .+. .|...|.+++|+ ++ ++++++.||.|++||+++.+....+.....| ...|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i 236 (397)
T 1sq9_A 158 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 236 (397)
T ss_dssp SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred cccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCcc
Confidence 66665 664 388999999999 88 9999999999999999987644444331225 6799
Q ss_pred eEEEeeCCCCCEEEEEEeC---CCeEEEEECCCCCCCeeeecc-------------cccceeEEEEecCCCCeEEEecCC
Q 035558 133 VRLGWNKQDPRYMATIIMD---SAKVVVLDIRFPTLPVVELQR-------------HQASVNAIAWAPHSSCHICTAGDD 196 (253)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~~---~~~i~~~d~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~l~~~~~d 196 (253)
.+++|+| ++.+|++++.+ +. |++||+++.+ ++..+.. |...|.+++|+|++ .+|++++.|
T Consensus 237 ~~i~~~~-~~~~l~~~~~d~~~g~-i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d 312 (397)
T 1sq9_A 237 RSVKFSP-QGSLLAIAHDSNSFGC-ITLYETEFGE-RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWD 312 (397)
T ss_dssp EEEEECS-STTEEEEEEEETTEEE-EEEEETTTCC-EEEEECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETT
T ss_pred ceEEECC-CCCEEEEEecCCCCce-EEEEECCCCc-ccceeccCcccccccccccccCCcEEEEEECCCC-CEEEEEeCC
Confidence 9999999 89999999999 77 9999999865 4778887 99999999999999 699999999
Q ss_pred CcEEEEeccCCCCCCCCCCCCeeec------cC---------------CCceeEEEEcCCC----------CceEEEEcC
Q 035558 197 SQALIWDLSSMGQPVEGGLDPILAY------TA---------------GAEIEQLQWSSSQ----------PDWVAIAFS 245 (253)
Q Consensus 197 g~i~iwd~~~~~~~~~~~~~~~~~~------~~---------------~~~v~~~~~~~~~----------~~~~~~~~~ 245 (253)
|.|++||+++.+... ... .| ..+|.+++|+|++ +.+++++.|
T Consensus 313 g~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~d 385 (397)
T 1sq9_A 313 GKLRFWDVKTKERIT-------TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLD 385 (397)
T ss_dssp SEEEEEETTTTEEEE-------EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETT
T ss_pred CeEEEEEcCCCceeE-------EEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCC
Confidence 999999998876433 333 55 8999999999998 678899999
Q ss_pred CcEEEEEC
Q 035558 246 TKLQILRV 253 (253)
Q Consensus 246 ~~i~vw~l 253 (253)
+.|++|++
T Consensus 386 g~i~iw~~ 393 (397)
T 1sq9_A 386 RSIRWFRE 393 (397)
T ss_dssp TEEEEEEE
T ss_pred CcEEEEEc
Confidence 99999985
No 59
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=233.33 Aligned_cols=234 Identities=18% Similarity=0.279 Sum_probs=189.8
Q ss_pred CceEEeec-C-cEEEEEccCCccccc-eeeeecCCCCccccCCeeEEEecC-----CCCCEEEEEeCCCeEEEEeccCce
Q 035558 5 PDLLATSS-D-FLRVWRISDEDRRVE-LKSLLNGNKNSEYCGPLTSFDWNE-----AEPRRIGTSSIDTTCTIWDIEREA 76 (253)
Q Consensus 5 ~~~l~~~~-~-~v~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~l~~~~~dg~i~vwd~~~~~ 76 (253)
+.+|++++ + .|++||+..+ + ....+.+|. ..|.+++|.| +++++|++++.||.|++||+++++
T Consensus 80 ~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~-----~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~ 150 (357)
T 3i2n_A 80 QRYLATGDFGGNLHIWNLEAP----EMPVYSVKGHK-----EIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD 150 (357)
T ss_dssp TCCEEEEETTSCEEEECTTSC----SSCSEEECCCS-----SCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS
T ss_pred CceEEEecCCCeEEEEeCCCC----CccEEEEEecc-----cceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC
Confidence 67888877 5 9999999986 4 678888998 8999996532 788999999999999999999886
Q ss_pred -eeeeeecccc----cEEEEE----ec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC--CCCE
Q 035558 77 -VDTQLIAHDK----EVYDIA----WG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ--DPRY 144 (253)
Q Consensus 77 -~~~~~~~~~~----~v~~~~----~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~ 144 (253)
.+..+..|.+ .+.+++ |+ +++++++++.||.|++||+++.+.... ..+...|.+++|+|. ++.+
T Consensus 151 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~ 226 (357)
T 3i2n_A 151 DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE----TNIKNGVCSLEFDRKDISMNK 226 (357)
T ss_dssp SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE----EECSSCEEEEEESCSSSSCCE
T ss_pred CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee----cCCCCceEEEEcCCCCCCCCE
Confidence 6777765554 899998 67 899999999999999999998864222 244568999999985 6789
Q ss_pred EEEEEeCCCeEEEEECCCCCCCeeee-----cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCC-----
Q 035558 145 MATIIMDSAKVVVLDIRFPTLPVVEL-----QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGG----- 214 (253)
Q Consensus 145 l~~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----- 214 (253)
+++++.++. |++||+++... ...+ ..|...|++++|+|++..+|++++.||.|++||++.........
T Consensus 227 l~~~~~dg~-i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~ 304 (357)
T 3i2n_A 227 LVATSLEGK-FHVFDMRTQHP-TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIE 304 (357)
T ss_dssp EEEEESTTE-EEEEEEEEEET-TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCC
T ss_pred EEEECCCCe-EEEEeCcCCCc-ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCc
Confidence 999999998 99999987543 3333 38999999999999983389999999999999998765331000
Q ss_pred -------CCCeeeccCCCceeEEEEcCCCCceE-EEEcCCcEEEEEC
Q 035558 215 -------LDPILAYTAGAEIEQLQWSSSQPDWV-AIAFSTKLQILRV 253 (253)
Q Consensus 215 -------~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~vw~l 253 (253)
.......+|..+|++++|+|+++.++ +++.|+.|++|++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~ 351 (357)
T 3i2n_A 305 MGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIV 351 (357)
T ss_dssp CCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred cccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEEC
Confidence 11234567999999999999999888 7999999999985
No 60
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.5e-35 Score=243.72 Aligned_cols=222 Identities=16% Similarity=0.286 Sum_probs=191.5
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
+++.+|++++ + .|++|+... .....+.+|. ..|.+++|+ +++++|++|+.||.|++||. +++.+..
T Consensus 313 ~~~~~l~t~~~d~~i~~w~~~~-----~~~~~~~~~~-----~~v~~~~~s-~~g~~l~~~~~dg~v~~~~~-~~~~~~~ 380 (577)
T 2ymu_A 313 PDGQTIASASDDKTVKLWNRNG-----QHLQTLTGHS-----SSVWGVAFS-PDGQTIASASDDKTVKLWNR-NGQLLQT 380 (577)
T ss_dssp TTSSEEEEEETTSCEEEEETTS-----CEEEEECCCS-----SCEEEEEEC-TTSSEEEEEETTSEEEEEET-TCCEEEE
T ss_pred CCCCEEEEEeCCCeEEEEeCCC-----CeeEEEeCCC-----CCEEEEEEC-CCCCEEEEEeCCCEEEEEcC-CCCEEEE
Confidence 4566777776 4 999999876 5567788888 899999999 89999999999999999996 4677888
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
+.+|...|.+++|+ ++++|++++.|+.|++||... + .+.....+...|.+++|+| +++++++++.|+. |++||
T Consensus 381 ~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-~---~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~-v~~w~ 454 (577)
T 2ymu_A 381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q---LLQTLTGHSSSVWGVAFSP-DDQTIASASDDKT-VKLWN 454 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC-C---EEEEEECCSSCEEEEEECT-TSSEEEEEETTSE-EEEEE
T ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC-C---EEEEecCCCCCeEEEEECC-CCCEEEEEcCCCE-EEEEE
Confidence 89999999999999 999999999999999999643 3 2333346677999999999 8999999999998 99999
Q ss_pred CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558 160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW 239 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 239 (253)
... ..+..+.+|...|++++|+|++ ++|++++.|+.|++||.. ++.. ..+.+|...|++++|+|++++|
T Consensus 455 ~~~--~~~~~~~~~~~~v~~~~~spd~-~~las~~~d~~i~iw~~~-~~~~-------~~~~~h~~~v~~l~~s~dg~~l 523 (577)
T 2ymu_A 455 RNG--QLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQLL-------QTLTGHSSSVRGVAFSPDGQTI 523 (577)
T ss_dssp TTS--CEEEEEECCSSCEEEEEECTTS-CEEEEEETTSEEEEEETT-SCEE-------EEEECCSSCEEEEEECTTSSCE
T ss_pred CCC--CEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEcCC-CCEE-------EEEeCCCCCEEEEEEcCCCCEE
Confidence 753 3478888999999999999999 699999999999999964 3322 4677899999999999999999
Q ss_pred EEEEcCCcEEEEEC
Q 035558 240 VAIAFSTKLQILRV 253 (253)
Q Consensus 240 ~~~~~~~~i~vw~l 253 (253)
++++.|+.|++|++
T Consensus 524 ~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 524 ASASDDKTVKLWNR 537 (577)
T ss_dssp EEEETTSEEEEECT
T ss_pred EEEECcCEEEEEeC
Confidence 99999999999974
No 61
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=5e-35 Score=237.52 Aligned_cols=224 Identities=16% Similarity=0.197 Sum_probs=192.3
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
++.+|++|+ | .|++||+.++ +....+.+|. ..|.+++|+ +++ .+++|+.||+|++||+++++.+..+
T Consensus 131 ~~~~l~sgs~dg~i~vwd~~~~----~~~~~~~~h~-----~~V~~l~~~-~~~-~l~s~s~dg~i~vwd~~~~~~~~~~ 199 (464)
T 3v7d_B 131 EDNYVITGADDKMIRVYDSINK----KFLLQLSGHD-----GGVWALKYA-HGG-ILVSGSTDRTVRVWDIKKGCCTHVF 199 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTT----EEEEEECCCS-----SCEEEEEEC-STT-EEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCC----cEEEEEeCCC-----cCEEEEEEc-CCC-EEEEEeCCCCEEEEECCCCcEEEEE
Confidence 456788877 4 9999999987 8888999999 899999998 555 9999999999999999999999999
Q ss_pred ecccccEEEEEec---CCCeEEEEeCCCcEEEEEcCCCCCeee--------------------eeccCCCCCCeeEEEee
Q 035558 82 IAHDKEVYDIAWG---GVGVFASVSADGSVRVFDLRDKEHSTI--------------------IYESSEPDTPLVRLGWN 138 (253)
Q Consensus 82 ~~~~~~v~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~--------------------~~~~~~~~~~i~~~~~~ 138 (253)
.+|...|.+++|+ ++.++++++.||.|++||+++...... ......+...+.++ +
T Consensus 200 ~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~ 277 (464)
T 3v7d_B 200 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--S 277 (464)
T ss_dssp CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--E
T ss_pred CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--c
Confidence 9999999999998 568999999999999999998753321 22334555567766 4
Q ss_pred CCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCe
Q 035558 139 KQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPI 218 (253)
Q Consensus 139 ~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 218 (253)
+ +++++++++.|+. |++||+++.+ ++..+.+|...|.+++|+|++ .+|++|+.||.|++||+++++...
T Consensus 278 ~-~~~~l~~~~~d~~-i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~------- 346 (464)
T 3v7d_B 278 G-HGNIVVSGSYDNT-LIVWDVAQMK-CLYILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELMY------- 346 (464)
T ss_dssp E-ETTEEEEEETTSC-EEEEETTTTE-EEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEE-------
T ss_pred C-CCCEEEEEeCCCe-EEEEECCCCc-EEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEE-------
Confidence 5 7889999999999 9999999765 478888999999999999999 699999999999999999876433
Q ss_pred eeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 219 LAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 219 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
.+.+|...|.+++|++ ..+++++.|+.|++|++
T Consensus 347 ~~~~h~~~v~~~~~~~--~~l~s~s~dg~v~vwd~ 379 (464)
T 3v7d_B 347 TLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDA 379 (464)
T ss_dssp EECCCSSCEEEEEECS--SEEEEEETTSEEEEEET
T ss_pred EEeCCCCcEEEEEEcC--CEEEEEeCCCcEEEEEC
Confidence 6678999999999984 57899999999999985
No 62
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.5e-35 Score=232.17 Aligned_cols=226 Identities=18% Similarity=0.287 Sum_probs=190.3
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEecc-Cceeeee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE-REAVDTQ 80 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~ 80 (253)
++.+|++++ + .|++||+..+ +....+.+|. ..|.+++|+ ++.+++|+.||.|++||++ .......
T Consensus 145 ~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~-----~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~ 212 (401)
T 4aez_A 145 DGSFLSVGLGNGLVDIYDVESQ----TKLRTMAGHQ-----ARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGT 212 (401)
T ss_dssp TSSEEEEEETTSCEEEEETTTC----CEEEEECCCS-----SCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred CCCEEEEECCCCeEEEEECcCC----eEEEEecCCC-----CceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeE
Confidence 667777776 5 9999999987 7888888998 899999996 5799999999999999998 4567788
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE--eCCCeEEE
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII--MDSAKVVV 157 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~~~~~i~~ 157 (253)
+.+|...|.+++|+ ++.+|++++.||.|++||+++.+.. .....+...|.+++|+|....++++++ .|+. |++
T Consensus 213 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~---~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~-i~i 288 (401)
T 4aez_A 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPK---FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ-IHF 288 (401)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEE---EEECCCSSCCCEEEECTTSTTEEEEECCTTTCE-EEE
T ss_pred EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCcc---EEecCCcceEEEEEECCCCCCEEEEecCCCCCE-EEE
Confidence 88999999999999 9999999999999999999987643 333456679999999995566777765 5777 999
Q ss_pred EECCCCCCCeeeecccccceeEEEEecCCCCeEEE--ecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC
Q 035558 158 LDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICT--AGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS 235 (253)
Q Consensus 158 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 235 (253)
||+++.. ++..+. +...|.+++|+|++ .+|++ |+.||.|++||+.+..... .....+|...|.+++|+|+
T Consensus 289 ~d~~~~~-~~~~~~-~~~~v~~~~~s~~~-~~l~~~~g~~dg~i~v~~~~~~~~~~-----~~~~~~h~~~v~~~~~s~d 360 (401)
T 4aez_A 289 WNAATGA-RVNTVD-AGSQVTSLIWSPHS-KEIMSTHGFPDNNLSIWSYSSSGLTK-----QVDIPAHDTRVLYSALSPD 360 (401)
T ss_dssp EETTTCC-EEEEEE-CSSCEEEEEECSSS-SEEEEEECTTTCEEEEEEEETTEEEE-----EEEEECCSSCCCEEEECTT
T ss_pred EECCCCC-EEEEEe-CCCcEEEEEECCCC-CeEEEEeecCCCcEEEEecCCcccee-----EEEecCCCCCEEEEEECCC
Confidence 9999865 355554 66789999999999 58887 5589999999998854322 1245689999999999999
Q ss_pred CCceEEEEcCCcEEEEEC
Q 035558 236 QPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 236 ~~~~~~~~~~~~i~vw~l 253 (253)
++.+++++.|+.|++|++
T Consensus 361 g~~l~s~~~dg~i~iw~~ 378 (401)
T 4aez_A 361 GRILSTAASDENLKFWRV 378 (401)
T ss_dssp SSEEEEECTTSEEEEEEC
T ss_pred CCEEEEEeCCCcEEEEEC
Confidence 999999999999999985
No 63
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=5.4e-36 Score=238.47 Aligned_cols=237 Identities=12% Similarity=0.113 Sum_probs=171.3
Q ss_pred CCCCceEEeec-C-cEEEEEccCCcc-ccceeeeecCCCCccccCCeeEEEecC-------CCCCEEEEEeCCCeEEEEe
Q 035558 2 CQKPDLLATSS-D-FLRVWRISDEDR-RVELKSLLNGNKNSEYCGPLTSFDWNE-------AEPRRIGTSSIDTTCTIWD 71 (253)
Q Consensus 2 p~~~~~l~~~~-~-~v~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~l~~~~~dg~i~vwd 71 (253)
|+++.+|++++ | +|++||...+.. .......+.+|. +.|++++|+| .++++|++|+.|++|+|||
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~-----~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHH-----NFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR 172 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCS-----SCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCC-----CceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence 45667888888 5 999999988521 123456688998 8999999984 2688999999999999999
Q ss_pred ccCceeeeeeecccccEEEEEec-CC-CeEEEEeCCCcEEEEEcCCCCCeeeee----------------------ccCC
Q 035558 72 IEREAVDTQLIAHDKEVYDIAWG-GV-GVFASVSADGSVRVFDLRDKEHSTIIY----------------------ESSE 127 (253)
Q Consensus 72 ~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~----------------------~~~~ 127 (253)
++++..+..+..|..+|.+++|+ ++ .+|++++.||+|++||+++++...... ....
T Consensus 173 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 252 (393)
T 4gq1_A 173 LTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSG 252 (393)
T ss_dssp EETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------C
T ss_pred CCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccc
Confidence 99888888888899999999999 55 589999999999999999875322111 1234
Q ss_pred CCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEE------------------EEec-CCCC
Q 035558 128 PDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAI------------------AWAP-HSSC 188 (253)
Q Consensus 128 ~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~------------------~~~~-~~~~ 188 (253)
+...+.++.|.+.++..+++++.|+. +++||++.... ...+..|...+..+ .|+| .+..
T Consensus 253 ~~~~v~~v~~~~~dg~~l~s~s~d~~-i~vwd~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (393)
T 4gq1_A 253 IASSLANVRWIGSDGSGILAMCKSGA-WLRWNLFANND-YNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDY 330 (393)
T ss_dssp CSSSCSEEEEETTTTCEEEEECTTSE-EEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTE
T ss_pred ccccceeeeeecCCCCEEEEEeCCCC-EEEEECccCCC-CceEeeecCccccEEEccccccccccCcceeEEEccCCCCE
Confidence 55688999998659999999999998 99999987543 33333333333332 3333 2324
Q ss_pred eEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 189 HICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 189 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
++++|+.||+|++||+.++.... ...+|..+|.+++|+|+|++|+++ .++.+.+|+|
T Consensus 331 ~~~sgs~Dg~V~lwd~~~~~~~~-------~~~~~~~~V~svafspdG~~LA~a-s~~Gv~lvrL 387 (393)
T 4gq1_A 331 FATAHSQHGLIQLINTYEKDSNS-------IPIQLGMPIVDFCWHQDGSHLAIA-TEGSVLLTRL 387 (393)
T ss_dssp EEEEETTTTEEEEEETTCTTCCE-------EEEECSSCEEEEEECTTSSEEEEE-ESSEEEEEEE
T ss_pred EEEEECCCCEEEEEECCCCcEEE-------EecCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEE
Confidence 67788999999999999876543 667888999999999999865555 5666777764
No 64
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.4e-34 Score=224.09 Aligned_cols=233 Identities=17% Similarity=0.303 Sum_probs=196.8
Q ss_pred CCCCCceEEeec-C-cEEEEEccCCccc-cceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee
Q 035558 1 ECQKPDLLATSS-D-FLRVWRISDEDRR-VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV 77 (253)
Q Consensus 1 sp~~~~~l~~~~-~-~v~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 77 (253)
+|+++++|++|+ | +|+|||+...... ..+...+++|. ..|.+++|+ +++++|++|+.|+.|++|+......
T Consensus 47 sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~-----~~V~~~~~s-~dg~~l~s~~~d~~i~~~~~~~~~~ 120 (340)
T 4aow_A 47 TPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS-----HFVSDVVIS-SDGQFALSGSWDGTLRLWDLTTGTT 120 (340)
T ss_dssp CTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCS-----SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEE
T ss_pred eCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCC-----CCEEEEEEC-CCCCEEEEEcccccceEEeecccce
Confidence 477789999988 5 9999999765211 23567788998 899999999 8999999999999999999999988
Q ss_pred eeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC-CCEEEEEEeCCCeE
Q 035558 78 DTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD-PRYMATIIMDSAKV 155 (253)
Q Consensus 78 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~i 155 (253)
......+...+..+.++ ++.+|++++.|+.+++||+..... .......+...+..++|++.. ..++++++.|+. |
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~-i 197 (340)
T 4aow_A 121 TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK--YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL-V 197 (340)
T ss_dssp EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE--EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSC-E
T ss_pred eeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce--EEEEeccccCcccceEEccCCCCcEEEEEcCCCE-E
Confidence 88888888899999999 999999999999999999886652 333445667789999998843 346778888888 9
Q ss_pred EEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC
Q 035558 156 VVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS 235 (253)
Q Consensus 156 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 235 (253)
++||+++.. .+..+.+|...|++++|+|++ ++|++|+.||.|++||+++.... ....+...|..++|+|+
T Consensus 198 ~i~d~~~~~-~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~--------~~~~~~~~v~~~~~~~~ 267 (340)
T 4aow_A 198 KVWNLANCK-LKTNHIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKHL--------YTLDGGDIINALCFSPN 267 (340)
T ss_dssp EEEETTTTE-EEEEECCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEE--------EEEECSSCEEEEEECSS
T ss_pred EEEECCCCc-eeeEecCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCcee--------eeecCCceEEeeecCCC
Confidence 999999865 478888999999999999999 69999999999999999886532 34456678999999998
Q ss_pred CCceEEEEcCCcEEEEEC
Q 035558 236 QPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 236 ~~~~~~~~~~~~i~vw~l 253 (253)
+ .+++++.|+.|++|++
T Consensus 268 ~-~~~~~~~d~~i~iwd~ 284 (340)
T 4aow_A 268 R-YWLCAATGPSIKIWDL 284 (340)
T ss_dssp S-SEEEEEETTEEEEEET
T ss_pred C-ceeeccCCCEEEEEEC
Confidence 7 4888899999999985
No 65
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.1e-35 Score=234.44 Aligned_cols=234 Identities=16% Similarity=0.224 Sum_probs=192.6
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
++.+|++++ + .|++||+..+ +....+.+|. ..|.+++|+ +++++|++++.||.|++||+++++.+..+
T Consensus 150 ~~~~l~s~s~d~~i~iwd~~~~----~~~~~~~~h~-----~~v~~~~~~-~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 219 (420)
T 3vl1_A 150 SGEALISSSQDMQLKIWSVKDG----SNPRTLIGHR-----ATVTDIAII-DRGRNVLSASLDGTIRLWECGTGTTIHTF 219 (420)
T ss_dssp TSSEEEEEETTSEEEEEETTTC----CCCEEEECCS-----SCEEEEEEE-TTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCC----cCceEEcCCC-----CcEEEEEEc-CCCCEEEEEcCCCcEEEeECCCCceeEEe
Confidence 566777777 5 9999999987 7788889998 899999999 88999999999999999999999988877
Q ss_pred ec---ccccEEEE---------------------Eec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEE
Q 035558 82 IA---HDKEVYDI---------------------AWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLG 136 (253)
Q Consensus 82 ~~---~~~~v~~~---------------------~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~ 136 (253)
.. |...+.++ +|+ ++++|++++.||.|++||+++++....+ ...+...|.+++
T Consensus 220 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~v~~~~ 297 (420)
T 3vl1_A 220 NRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL--PSKFTCSCNSLT 297 (420)
T ss_dssp CBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEE--CCTTSSCEEEEE
T ss_pred ecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEc--ccccCCCceeEE
Confidence 64 33444444 456 7889999999999999999988744333 335666999999
Q ss_pred eeCCCCC-EEEEEEeCCCeEEEEECCCCCCCeeeecc-cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCC--
Q 035558 137 WNKQDPR-YMATIIMDSAKVVVLDIRFPTLPVVELQR-HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVE-- 212 (253)
Q Consensus 137 ~~~~~~~-~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-- 212 (253)
|+| ++. ++++++.|+. |++||+++...++..+.. |...+.++.+ +++ .+|++++.|+.|++|++.....+..
T Consensus 298 ~~~-~~~~~l~~g~~dg~-i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~-~~l~s~~~d~~v~iw~~~~~~~~~~~~ 373 (420)
T 3vl1_A 298 VDG-NNANYIYAGYENGM-LAQWDLRSPECPVGEFLINEGTPINNVYF-AAG-ALFVSSGFDTSIKLDIISDPESERPAI 373 (420)
T ss_dssp ECS-SCTTEEEEEETTSE-EEEEETTCTTSCSEEEEESTTSCEEEEEE-ETT-EEEEEETTTEEEEEEEECCTTCCSCEE
T ss_pred EeC-CCCCEEEEEeCCCe-EEEEEcCCCcCchhhhhccCCCCceEEEe-CCC-CEEEEecCCccEEEEeccCCCCCccce
Confidence 999 666 9999999998 999999987766777776 6678888865 566 5999999999999999988654421
Q ss_pred CCCCCeeeccCCCceeEEEEcCCCC---ceEEEEcCCcEEEEEC
Q 035558 213 GGLDPILAYTAGAEIEQLQWSSSQP---DWVAIAFSTKLQILRV 253 (253)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~i~vw~l 253 (253)
....+.....|...|.+++|+|+++ .+++++.++.+.+|++
T Consensus 374 ~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~ 417 (420)
T 3vl1_A 374 EFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNL 417 (420)
T ss_dssp CTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEES
T ss_pred eccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEec
Confidence 1123456678899999999999998 7999999999999985
No 66
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.5e-35 Score=230.21 Aligned_cols=236 Identities=13% Similarity=0.209 Sum_probs=188.4
Q ss_pred CCCCCceEEeec----C-cEEEEEccCCccccceeee-ecCCCCccccCCeeEEEecCCC---CCEEEEEeCCCeEEEEe
Q 035558 1 ECQKPDLLATSS----D-FLRVWRISDEDRRVELKSL-LNGNKNSEYCGPLTSFDWNEAE---PRRIGTSSIDTTCTIWD 71 (253)
Q Consensus 1 sp~~~~~l~~~~----~-~v~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~vwd 71 (253)
+|.+..++++++ + .|++|++.++ +.... ..+|. .+|.+++|+ ++ +++|++|+.||.|++||
T Consensus 27 ~p~~~~l~~~~s~~~~d~~v~iw~~~~~----~~~~~~~~~~~-----~~v~~~~~~-~~~~~~~~l~~~~~dg~i~iwd 96 (357)
T 3i2n_A 27 VPCSAKFVTMGNFARGTGVIQLYEIQHG----DLKLLREIEKA-----KPIKCGTFG-ATSLQQRYLATGDFGGNLHIWN 96 (357)
T ss_dssp CTTSSEEEEEEC--CCCEEEEEEEECSS----SEEEEEEEEES-----SCEEEEECT-TCCTTTCCEEEEETTSCEEEEC
T ss_pred cCCCceEEEecCccCCCcEEEEEeCCCC----cccceeeeccc-----CcEEEEEEc-CCCCCCceEEEecCCCeEEEEe
Confidence 456667777773 6 9999999885 43323 22566 899999999 55 79999999999999999
Q ss_pred ccCce-eeeeeecccccEEEEE------ec-CCCeEEEEeCCCcEEEEEcCCCC-CeeeeeccCC-CCCCeeEEE----e
Q 035558 72 IEREA-VDTQLIAHDKEVYDIA------WG-GVGVFASVSADGSVRVFDLRDKE-HSTIIYESSE-PDTPLVRLG----W 137 (253)
Q Consensus 72 ~~~~~-~~~~~~~~~~~v~~~~------~~-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~-~~~~i~~~~----~ 137 (253)
+++++ .+..+.+|...|.+++ |+ ++++|++++.||.|++||+++++ ....+..... ....+.+++ |
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (357)
T 3i2n_A 97 LEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAY 176 (357)
T ss_dssp TTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCC
T ss_pred CCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEecc
Confidence 99888 8888999999999995 46 78899999999999999999886 3333322222 234788888 6
Q ss_pred eCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEec---CCCCeEEEecCCCcEEEEeccCCCCCCCCC
Q 035558 138 NKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAP---HSSCHICTAGDDSQALIWDLSSMGQPVEGG 214 (253)
Q Consensus 138 ~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 214 (253)
+| +++++++++.++. |++||+++.. ......|...|.+++|+| ++ .+|++++.||.|++||+++......
T Consensus 177 ~~-~~~~l~~~~~d~~-i~i~d~~~~~--~~~~~~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~-- 249 (357)
T 3i2n_A 177 NQ-EERVVCAGYDNGD-IKLFDLRNMA--LRWETNIKNGVCSLEFDRKDISM-NKLVATSLEGKFHVFDMRTQHPTKG-- 249 (357)
T ss_dssp C--CCCEEEEEETTSE-EEEEETTTTE--EEEEEECSSCEEEEEESCSSSSC-CEEEEEESTTEEEEEEEEEEETTTE--
T ss_pred CC-CCCEEEEEccCCe-EEEEECccCc--eeeecCCCCceEEEEcCCCCCCC-CEEEEECCCCeEEEEeCcCCCcccc--
Confidence 77 8999999999988 9999999865 344567889999999999 77 6999999999999999988654320
Q ss_pred CCCeeeccCCCceeEEEEcCCCC-ceEEEEcCCcEEEEEC
Q 035558 215 LDPILAYTAGAEIEQLQWSSSQP-DWVAIAFSTKLQILRV 253 (253)
Q Consensus 215 ~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~vw~l 253 (253)
.......+|...|++++|+|+++ .+++++.|+.|++|++
T Consensus 250 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 289 (357)
T 3i2n_A 250 FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKY 289 (357)
T ss_dssp EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEE
T ss_pred eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeec
Confidence 00012238999999999999998 6889999999999984
No 67
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.3e-36 Score=231.88 Aligned_cols=211 Identities=18% Similarity=0.247 Sum_probs=169.1
Q ss_pred eeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce--eeeeeecccccEEEEEec---CCCeEEEEeCC
Q 035558 31 SLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA--VDTQLIAHDKEVYDIAWG---GVGVFASVSAD 105 (253)
Q Consensus 31 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~---~~~~l~~~~~d 105 (253)
..+.+|. +.|++++|+ +++++|++|+.|++|++||+++++ .+..+.+|..+|.+++|+ ++++|++|+.|
T Consensus 7 ~~~~~H~-----~~V~~v~~s-~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D 80 (316)
T 3bg1_A 7 TVDTSHE-----DMIHDAQMD-YYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD 80 (316)
T ss_dssp ------------CCEEEEEEC-GGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT
T ss_pred eeccccc-----CeEEEeeEc-CCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC
Confidence 3456888 899999999 899999999999999999998764 467788999999999997 37899999999
Q ss_pred CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC-CCEEEEEEeCCCeEEEEECCCCCCC--eeeecccccceeEEEE
Q 035558 106 GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD-PRYMATIIMDSAKVVVLDIRFPTLP--VVELQRHQASVNAIAW 182 (253)
Q Consensus 106 g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~i~~~~~ 182 (253)
++|++||++++... .......|...|.+++|+|.. +.+|++++.|+. |++||++..... ...+.+|...+.+++|
T Consensus 81 ~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~-i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~ 158 (316)
T 3bg1_A 81 RKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA-ISLLTYTGEGQWEVKKINNAHTIGCNAVSW 158 (316)
T ss_dssp SCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC-EEEEEECSSSCEEECCBTTSSSSCBCCCEE
T ss_pred CEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC-EEEEecCCCCCcceeeeeccccCCcceEEE
Confidence 99999999876422 223345677799999999942 789999999999 999999875321 3456789999999999
Q ss_pred ecCC----------------CCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC----CceEEE
Q 035558 183 APHS----------------SCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ----PDWVAI 242 (253)
Q Consensus 183 ~~~~----------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~ 242 (253)
+|+. .++|++|+.|++|++||++...... ....+.+|...|.+++|+|++ ..++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~----~~~~l~~h~~~V~~v~~sp~~~~~~~~las~ 234 (316)
T 3bg1_A 159 APAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWK----EEQKLEAHSDWVRDVAWAPSIGLPTSTIASC 234 (316)
T ss_dssp CCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEE----EEECCBCCSSCEEEEECCCCSSCSCCEEEEE
T ss_pred ccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccc----eeeecccCCCceEEEEecCCCCCCCceEEEE
Confidence 9973 1589999999999999997543110 013556899999999999986 678899
Q ss_pred EcCCcEEEEEC
Q 035558 243 AFSTKLQILRV 253 (253)
Q Consensus 243 ~~~~~i~vw~l 253 (253)
+.|+.|++|++
T Consensus 235 s~D~~v~iw~~ 245 (316)
T 3bg1_A 235 SQDGRVFIWTC 245 (316)
T ss_dssp ETTCEEEEEEC
T ss_pred cCCCeEEEEEc
Confidence 99999999974
No 68
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-35 Score=251.19 Aligned_cols=237 Identities=19% Similarity=0.310 Sum_probs=197.5
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCC--CCEEEEEeCCCeEEEEeccCce--e
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAE--PRRIGTSSIDTTCTIWDIEREA--V 77 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~--~ 77 (253)
++.+|++|+ + .|++|++..+ ..+....+.+|. .+|++++|+ ++ +++|++|+.||.|++||+.+++ .
T Consensus 20 dg~~latg~~dg~I~vwd~~~~--~~~~~~~l~~h~-----~~V~~l~~s-~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~ 91 (753)
T 3jro_A 20 YGKRLATCSSDKTIKIFEVEGE--THKLIDTLTGHE-----GPVWRVDWA-HPKFGTILASCSYDGKVLIWKEENGRWSQ 91 (753)
T ss_dssp SSCCEEEEETTTEEEEEEEETT--EEEEEEEECCCS-----SCEEEEEEC-CTTSCSEEEEEETTSCEEEEEEETTEEEE
T ss_pred CCCeEEEEECCCcEEEEecCCC--CCccceeccCCc-----CceEEEEec-CCCCCCEEEEEeCCCeEEEEECCCCcccc
Confidence 566777776 5 9999999842 236778889998 899999998 55 8999999999999999999886 6
Q ss_pred eeeeecccccEEEEEec-C--CCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC------------CC
Q 035558 78 DTQLIAHDKEVYDIAWG-G--VGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ------------DP 142 (253)
Q Consensus 78 ~~~~~~~~~~v~~~~~~-~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~ 142 (253)
...+.+|...|.+++|+ + ++.+++|+.||.|++||+++....... ....+...|.+++|+|. ++
T Consensus 92 ~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~-~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~ 170 (753)
T 3jro_A 92 IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKES 170 (753)
T ss_dssp EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE-EEECCSSCEEEEEECCCC---------CGGG
T ss_pred cccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee-EeecCCCceEEEEecCcccccccccccCCCC
Confidence 77778899999999999 7 899999999999999999987433222 22356679999999995 48
Q ss_pred CEEEEEEeCCCeEEEEECCCCC---CCeeeecccccceeEEEEecC---CCCeEEEecCCCcEEEEeccCCCCCCCCCCC
Q 035558 143 RYMATIIMDSAKVVVLDIRFPT---LPVVELQRHQASVNAIAWAPH---SSCHICTAGDDSQALIWDLSSMGQPVEGGLD 216 (253)
Q Consensus 143 ~~l~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 216 (253)
.++++++.|+. |++||+++.. .+...+.+|...|++++|+|+ + .+|++++.||.|++||+++...+.. ..
T Consensus 171 ~~l~sgs~dg~-I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~-~~l~s~s~Dg~I~iwd~~~~~~~~~--~~ 246 (753)
T 3jro_A 171 RKFVTGGADNL-VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-SYLASVSQDRTCIIWTQDNEQGPWK--KT 246 (753)
T ss_dssp CCEEEEETTSC-EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS-EEEEEEESSSCEEEEEESSSSSCCB--CC
T ss_pred CEEEEEECCCe-EEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCC-CEEEEEecCCEEEEecCCCCCCcce--eE
Confidence 89999999999 9999998765 235667889999999999999 6 6999999999999999998653220 01
Q ss_pred CeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 217 PILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 217 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
......|...|++++|+|+++.+++++.|+.|++|++
T Consensus 247 ~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 247 LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (753)
T ss_dssp BSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred EeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence 1234468899999999999999999999999999985
No 69
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-34 Score=230.10 Aligned_cols=236 Identities=13% Similarity=0.226 Sum_probs=188.1
Q ss_pred CCc-eEEeec-C-cEEEEEc----cCCcc--ccceeeeecC----CC-CccccCCeeEEEecCCCCCEEEEEeCCCeEEE
Q 035558 4 KPD-LLATSS-D-FLRVWRI----SDEDR--RVELKSLLNG----NK-NSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTI 69 (253)
Q Consensus 4 ~~~-~l~~~~-~-~v~iw~~----~~~~~--~~~~~~~~~~----~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 69 (253)
++. +|++++ + .|++|++ ..+.. .......+.. |. ...+...|++++|+ +++++|++|+.||.|++
T Consensus 56 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i 134 (425)
T 1r5m_A 56 LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS-HDGNSIVTGVENGELRL 134 (425)
T ss_dssp SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEEC-TTSSEEEEEETTSCEEE
T ss_pred CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEc-CCCCEEEEEeCCCeEEE
Confidence 444 888877 4 9999999 76510 0002222322 20 00011799999999 79999999999999999
Q ss_pred EeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeee-------------------------
Q 035558 70 WDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIY------------------------- 123 (253)
Q Consensus 70 wd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------------------------- 123 (253)
|| .+++.+..+..|...|.+++|+ ++++|++++.||.|++||+++++....+.
T Consensus 135 ~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (425)
T 1r5m_A 135 WN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVE 213 (425)
T ss_dssp EE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCE
T ss_pred Ee-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEE
Confidence 99 5677888888999999999999 99999999999999999998764322111
Q ss_pred ----------------------------ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccccc
Q 035558 124 ----------------------------ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQA 175 (253)
Q Consensus 124 ----------------------------~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 175 (253)
....+...|.+++|+| ++++|++++.++. |++||+++.. ++..+..|..
T Consensus 214 ~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~-i~i~d~~~~~-~~~~~~~~~~ 290 (425)
T 1r5m_A 214 WVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASDDGT-LRIWHGGNGN-SQNCFYGHSQ 290 (425)
T ss_dssp EEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TTTEEEEEETTSC-EEEECSSSBS-CSEEECCCSS
T ss_pred EcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CCCEEEEEcCCCE-EEEEECCCCc-cceEecCCCc
Confidence 1224566899999999 8899999999998 9999999865 4778888999
Q ss_pred ceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 176 SVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 176 ~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
.|.+++|+|++ ++++++.|+.|++||+++.... .....|..+|.+++|+|+++.+++++.|+.|++|++
T Consensus 291 ~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~-------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 291 SIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLL-------ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp CEEEEEEETTT--EEEEEETTSEEEEEETTTTEEE-------EEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred cEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEe-------EecccCCccEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 99999999987 8999999999999999886643 356678999999999999998999999999999985
No 70
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.9e-35 Score=232.03 Aligned_cols=230 Identities=13% Similarity=0.075 Sum_probs=178.9
Q ss_pred CCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558 2 CQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT 79 (253)
Q Consensus 2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 79 (253)
|.++.+|++++ + .|++||+.. .....+..+.. +...|.+++|+ +++++|++|+.|+.|++||+ +++.+.
T Consensus 128 ~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~--~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~-~~~~~~ 198 (383)
T 3ei3_B 128 QFNTNQLFVSSIRGATTLRDFSG-----SVIQVFAKTDS--WDYWYCCVDVS-VSRQMLATGDSTGRLLLLGL-DGHEIF 198 (383)
T ss_dssp TTEEEEEEEEETTTEEEEEETTS-----CEEEEEECCCC--SSCCEEEEEEE-TTTTEEEEEETTSEEEEEET-TSCEEE
T ss_pred CCCCCEEEEEeCCCEEEEEECCC-----CceEEEeccCC--CCCCeEEEEEC-CCCCEEEEECCCCCEEEEEC-CCCEEE
Confidence 54667888877 5 999999986 33444433321 11789999999 89999999999999999999 477888
Q ss_pred eeecccccEEEEEec-CCC-eEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558 80 QLIAHDKEVYDIAWG-GVG-VFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV 157 (253)
Q Consensus 80 ~~~~~~~~v~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~ 157 (253)
.+.+|...|.+++|+ ++. ++++++.|+.|++||+++.+..........+...|.+++|+|.++.+|++++.|+. |++
T Consensus 199 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~-i~i 277 (383)
T 3ei3_B 199 KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNE-IRV 277 (383)
T ss_dssp EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSE-EEE
T ss_pred EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCc-EEE
Confidence 889999999999999 777 99999999999999999843211111111466799999999977889999999998 999
Q ss_pred EECCCCCCCeeeecccc-----------------cceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeee
Q 035558 158 LDIRFPTLPVVELQRHQ-----------------ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILA 220 (253)
Q Consensus 158 ~d~~~~~~~~~~~~~~~-----------------~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 220 (253)
||+++... ...+..|. ..+..++|+|++ ++ +++.|+.|++||+.+++... .+
T Consensus 278 wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg-~~--s~s~d~~i~iwd~~~~~~~~-------~l 346 (383)
T 3ei3_B 278 YSSYDWSK-PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD-QL--LLNDKRTIDIYDANSGGLVH-------QL 346 (383)
T ss_dssp EETTBTTS-CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCT-TT--CTTCCCCEEEEETTTCCEEE-------EE
T ss_pred EECCCCcc-ccccccccccccccccceEEeccCCCCceEEEecCCc-cc--ccCCCCeEEEEecCCCceee-------ee
Confidence 99998664 34444332 334457777777 35 88899999999999876433 34
Q ss_pred cc--CCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 221 YT--AGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 221 ~~--~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
.+ |...+..++|+|+++.+++++ |+.|++|++
T Consensus 347 ~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~ 380 (383)
T 3ei3_B 347 RDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNR 380 (383)
T ss_dssp CBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEEC
T ss_pred cCCCCCceEEEEEEecCccEEEEec-CCcEEEEec
Confidence 33 567788889999998776775 999999986
No 71
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=9.3e-35 Score=250.65 Aligned_cols=230 Identities=16% Similarity=0.145 Sum_probs=198.8
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
+++.+|++++ + .|++||+.++ +....+.+|. .+|.+++|+ +++++|++|+.||.|++||+.+++.+..
T Consensus 23 p~~~~la~~~~~g~v~iwd~~~~----~~~~~~~~~~-----~~v~~~~~s-~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 92 (814)
T 3mkq_A 23 PTEPWVLTTLYSGRVEIWNYETQ----VEVRSIQVTE-----TPVRAGKFI-ARKNWIIVGSDDFRIRVFNYNTGEKVVD 92 (814)
T ss_dssp SSSSEEEEEETTSEEEEEETTTT----EEEEEEECCS-----SCEEEEEEE-GGGTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCCCEEEEEeCCCEEEEEECCCC----ceEEEEecCC-----CcEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 3566777776 5 9999999887 7888899998 899999999 8999999999999999999999999999
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
+.+|...|++++|+ ++.+|++++.||.|++||++++... ......+...|.+++|+|.++..+++++.++. |++||
T Consensus 93 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~--~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-v~vwd 169 (814)
T 3mkq_A 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL--EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT-VKVWS 169 (814)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEE--EEEEECCSSCEEEEEEETTEEEEEEEEETTSE-EEEEE
T ss_pred EecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceE--EEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCe-EEEEE
Confidence 99999999999999 9999999999999999999887422 22333566689999999977889999999998 99999
Q ss_pred CCCCCCCeeeecccccceeEEEEec--CCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC
Q 035558 160 IRFPTLPVVELQRHQASVNAIAWAP--HSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP 237 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 237 (253)
++...........+...+.+++|+| ++ .+|++++.||.|++||++++... ....+|...|.+++|+|+++
T Consensus 170 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~-------~~~~~~~~~v~~~~~~~~~~ 241 (814)
T 3mkq_A 170 LGQSTPNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKSCV-------ATLEGHMSNVSFAVFHPTLP 241 (814)
T ss_dssp TTCSSCSEEEECCCTTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTTTEEE-------EEEECCSSCEEEEEECSSSS
T ss_pred CCCCcceeEEecCCCCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcEE-------EEEcCCCCCEEEEEEcCCCC
Confidence 9876653333334458999999999 88 59999999999999999886643 36677999999999999999
Q ss_pred ceEEEEcCCcEEEEEC
Q 035558 238 DWVAIAFSTKLQILRV 253 (253)
Q Consensus 238 ~~~~~~~~~~i~vw~l 253 (253)
.+++++.|+.|++|++
T Consensus 242 ~l~~~~~dg~v~vwd~ 257 (814)
T 3mkq_A 242 IIISGSEDGTLKIWNS 257 (814)
T ss_dssp EEEEEETTSCEEEEET
T ss_pred EEEEEeCCCeEEEEEC
Confidence 8999999999999985
No 72
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=234.35 Aligned_cols=239 Identities=14% Similarity=0.208 Sum_probs=182.6
Q ss_pred CCCceEEeec-C-cEEEEEccCCc-------cccceeeeecCCCCc-------cccCCeeEEEecCCCC--CEEEEEeCC
Q 035558 3 QKPDLLATSS-D-FLRVWRISDED-------RRVELKSLLNGNKNS-------EYCGPLTSFDWNEAEP--RRIGTSSID 64 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~-------~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~--~~l~~~~~d 64 (253)
+++.+||+|+ + .|+||++..+. ...+....+.+|... .....|++++|+ +++ ..|++++.|
T Consensus 38 ~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~-~~~~~~~l~s~s~d 116 (447)
T 3dw8_B 38 HSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL-PQKNAAQFLLSTND 116 (447)
T ss_dssp SSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC-CCCSSSEEEEEECS
T ss_pred CCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEc-CCCCcceEEEeCCC
Confidence 3677888887 5 99999998752 122357778888511 011569999999 666 789999999
Q ss_pred CeEEEEeccCceee---------------------------------------ee-eecccccEEEEEec-CCCeEEEEe
Q 035558 65 TTCTIWDIEREAVD---------------------------------------TQ-LIAHDKEVYDIAWG-GVGVFASVS 103 (253)
Q Consensus 65 g~i~vwd~~~~~~~---------------------------------------~~-~~~~~~~v~~~~~~-~~~~l~~~~ 103 (253)
+.|++||+.+++.. .. ..+|...|.+++|+ ++++|++|
T Consensus 117 ~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~- 195 (447)
T 3dw8_B 117 KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA- 195 (447)
T ss_dssp SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-
T ss_pred CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-
Confidence 99999999764432 12 35799999999999 99999998
Q ss_pred CCCcEEEEEcCCCCCeeeee-----ccCCCCCCeeEEEeeCCCC-CEEEEEEeCCCeEEEEECCCCCC---Ceeeecccc
Q 035558 104 ADGSVRVFDLRDKEHSTIIY-----ESSEPDTPLVRLGWNKQDP-RYMATIIMDSAKVVVLDIRFPTL---PVVELQRHQ 174 (253)
Q Consensus 104 ~dg~i~i~d~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~ 174 (253)
.|+.|++||+++........ ....+...|.+++|+| ++ ++|++++.|+. |++||+++... .+..+..|.
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~ 273 (447)
T 3dw8_B 196 DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGT-IRLCDMRASALCDRHSKLFEEPE 273 (447)
T ss_dssp CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSC-EEEEETTTCSSSCTTCEEECCC-
T ss_pred CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCe-EEEEECcCCccccceeeEeccCC
Confidence 79999999998543221111 2346677999999999 66 99999999998 99999998653 256777777
Q ss_pred c------------ceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCc---------------e
Q 035558 175 A------------SVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAE---------------I 227 (253)
Q Consensus 175 ~------------~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---------------v 227 (253)
. .|.+++|+|++ ++|++++. +.|++||++....+. ..+..|... +
T Consensus 274 ~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~i~~~ 345 (447)
T 3dw8_B 274 DPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLNMENRPV------ETYQVHEYLRSKLCSLYENDCIFDK 345 (447)
T ss_dssp ----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETTCCSSCS------CCEESCGGGTTTHHHHHHTSGGGCC
T ss_pred CccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCCCCcccc------ceeeccccccccccccccccccccc
Confidence 5 89999999999 69999998 999999998733332 244445321 3
Q ss_pred eEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 228 EQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
..++|+|+++++++++.|+.|++|++
T Consensus 346 ~~~~~s~~~~~l~s~s~dg~v~iwd~ 371 (447)
T 3dw8_B 346 FECCWNGSDSVVMTGSYNNFFRMFDR 371 (447)
T ss_dssp CCEEECTTSSEEEEECSTTEEEEEET
T ss_pred eEEEECCCCCEEEEeccCCEEEEEEc
Confidence 34999999999999999999999985
No 73
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.3e-34 Score=225.31 Aligned_cols=237 Identities=15% Similarity=0.195 Sum_probs=186.1
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee---e
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV---D 78 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~ 78 (253)
++.+|++++ + .|++||+..+ .......+..|. ..|.+++|+ +++++|++++.|+.|++||++.++. .
T Consensus 63 ~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~-----~~v~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 134 (372)
T 1k8k_C 63 DSNRIVTCGTDRNAYVWTLKGR--TWKPTLVILRIN-----RAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDWWVC 134 (372)
T ss_dssp TTTEEEEEETTSCEEEEEEETT--EEEEEEECCCCS-----SCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCC--eeeeeEEeecCC-----CceeEEEEC-CCCCEEEEEeCCCEEEEEEecCCCcceee
Confidence 567777776 5 9999999875 112233346677 899999999 8899999999999999999988762 2
Q ss_pred ee-eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCC---------------CeeeeeccCCCCCCeeEEEeeCCC
Q 035558 79 TQ-LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKE---------------HSTIIYESSEPDTPLVRLGWNKQD 141 (253)
Q Consensus 79 ~~-~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~---------------~~~~~~~~~~~~~~i~~~~~~~~~ 141 (253)
.. ...|...|.+++|+ ++++|++++.||.|++||++... ....+.....+...+.+++|+| +
T Consensus 135 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 213 (372)
T 1k8k_C 135 KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-N 213 (372)
T ss_dssp EEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-S
T ss_pred eeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC-C
Confidence 23 35688999999999 99999999999999999975211 1123344446777999999999 8
Q ss_pred CCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccC--CCCCC--------
Q 035558 142 PRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSS--MGQPV-------- 211 (253)
Q Consensus 142 ~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~-------- 211 (253)
+++|++++.|+. |++||+++.+ ++..+..|...|.+++|+|++ .+|+++ .|+.|++|++.. +.-..
T Consensus 214 ~~~l~~~~~d~~-i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~ 289 (372)
T 1k8k_C 214 GSRVAWVSHDST-VCLADADKKM-AVATLASETLPLLAVTFITES-SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPK 289 (372)
T ss_dssp SSEEEEEETTTE-EEEEEGGGTT-EEEEEECSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-
T ss_pred CCEEEEEeCCCE-EEEEECCCCc-eeEEEccCCCCeEEEEEecCC-CEEEEE-eCCeEEEEEccCcCceEEEeeccCccc
Confidence 999999999998 9999999866 488888999999999999998 577777 899999999988 31000
Q ss_pred -----------------CCCCC-------CeeeccCCCceeEEEEc-CCC---CceEEEEcCCcEEEEEC
Q 035558 212 -----------------EGGLD-------PILAYTAGAEIEQLQWS-SSQ---PDWVAIAFSTKLQILRV 253 (253)
Q Consensus 212 -----------------~~~~~-------~~~~~~~~~~v~~~~~~-~~~---~~~~~~~~~~~i~vw~l 253 (253)
..... .....+|..+|++++|+ +++ .++++++.|+.|++|++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~ 359 (372)
T 1k8k_C 290 QSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 359 (372)
T ss_dssp -------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred cchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence 00000 11224899999999977 555 78999999999999984
No 74
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.2e-34 Score=244.55 Aligned_cols=232 Identities=18% Similarity=0.249 Sum_probs=183.3
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
+++.+|++++ | .|++||+..+ +....+.+|. ..|.+++|+ +++++|++|+.|++|++||.........
T Consensus 440 ~~g~~l~sgs~Dg~v~vwd~~~~----~~~~~~~~h~-----~~v~~~~~s-~~~~~l~s~s~D~~i~iwd~~~~~~~~~ 509 (694)
T 3dm0_A 440 SDGQFALSGSWDGELRLWDLAAG----VSTRRFVGHT-----KDVLSVAFS-LDNRQIVSASRDRTIKLWNTLGECKYTI 509 (694)
T ss_dssp TTSSEEEEEETTSEEEEEETTTT----EEEEEEECCS-----SCEEEEEEC-TTSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred CCCCEEEEEeCCCcEEEEECCCC----cceeEEeCCC-----CCEEEEEEe-CCCCEEEEEeCCCEEEEEECCCCcceee
Confidence 3567888877 5 9999999987 7788899999 899999999 8999999999999999999875543322
Q ss_pred ---eecccccEEEEEec-CC--CeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCe
Q 035558 81 ---LIAHDKEVYDIAWG-GV--GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAK 154 (253)
Q Consensus 81 ---~~~~~~~v~~~~~~-~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~ 154 (253)
..+|...|.+++|+ ++ ..+++++.|++|++||+++.+.. .....|.+.|++++|+| ++++|++++.|+.
T Consensus 510 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~---~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~- 584 (694)
T 3dm0_A 510 SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR---STLAGHTGYVSTVAVSP-DGSLCASGGKDGV- 584 (694)
T ss_dssp CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE---EEECCCSSCEEEEEECT-TSSEEEEEETTSB-
T ss_pred ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE---EEEcCCCCCEEEEEEeC-CCCEEEEEeCCCe-
Confidence 24688999999999 54 58999999999999999987643 33456777999999999 9999999999999
Q ss_pred EEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCC------------CCeeecc
Q 035558 155 VVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGL------------DPILAYT 222 (253)
Q Consensus 155 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------~~~~~~~ 222 (253)
|++||+++.+. +..+. +...|.+++|+|++ .+|++++ |+.|++||+++......... .+.....
T Consensus 585 i~iwd~~~~~~-~~~~~-~~~~v~~~~~sp~~-~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (694)
T 3dm0_A 585 VLLWDLAEGKK-LYSLE-ANSVIHALCFSPNR-YWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKR 660 (694)
T ss_dssp CEEEETTTTEE-EECCB-CSSCEEEEEECSSS-SEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------
T ss_pred EEEEECCCCce-EEEec-CCCcEEEEEEcCCC-cEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCc
Confidence 99999998653 55554 45679999999998 4666554 67799999988653210000 0001112
Q ss_pred CCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 223 AGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 223 ~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
+...+++++|+|++++|++++.|+.|++|++
T Consensus 661 ~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 661 KVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp CCCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred eeEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence 2334789999999999999999999999986
No 75
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.5e-35 Score=229.80 Aligned_cols=238 Identities=16% Similarity=0.188 Sum_probs=177.6
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---ee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---VD 78 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~ 78 (253)
++++|++++ | .|++||+..+ ........+.+|. ..|.+++|+ +++++|++|+.|+.|++||+++++ ..
T Consensus 66 ~~~~l~s~s~d~~v~vwd~~~~-~~~~~~~~~~~~~-----~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 138 (377)
T 3dwl_C 66 KSNRIVTCSQDRNAYVYEKRPD-GTWKQTLVLLRLN-----RAATFVRWS-PNEDKFAVGSGARVISVCYFEQENDWWVS 138 (377)
T ss_dssp TTCCEEEEETTSSEEEC-------CCCCEEECCCCS-----SCEEEEECC-TTSSCCEEEESSSCEEECCC-----CCCC
T ss_pred CCCEEEEEeCCCeEEEEEcCCC-CceeeeeEecccC-----CceEEEEEC-CCCCEEEEEecCCeEEEEEECCcccceee
Confidence 466777777 5 9999999885 2233567777888 899999999 799999999999999999999877 46
Q ss_pred eeeec-ccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCC---------------CeeeeeccCCCCCCeeEEEeeCCC
Q 035558 79 TQLIA-HDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKE---------------HSTIIYESSEPDTPLVRLGWNKQD 141 (253)
Q Consensus 79 ~~~~~-~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~---------------~~~~~~~~~~~~~~i~~~~~~~~~ 141 (253)
..+.. |...|.+++|+ ++++|++++.|+.|++||++... ....+... .+...|.+++|+| +
T Consensus 139 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp-~ 216 (377)
T 3dwl_C 139 KHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP-S 216 (377)
T ss_dssp EEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT-T
T ss_pred eEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC-C
Confidence 67777 99999999999 99999999999999999996432 11223333 7777999999999 8
Q ss_pred CCEEEEEEeCCCeEEEEECCCCCCC---eeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC----CC-
Q 035558 142 PRYMATIIMDSAKVVVLDIRFPTLP---VVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV----EG- 213 (253)
Q Consensus 142 ~~~l~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~- 213 (253)
+++|++++.|+. |++||+++...+ +..+..|...|.+++|+|++ ++|++++.|+.+ +|+........ ..
T Consensus 217 ~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 293 (377)
T 3dwl_C 217 GNALAYAGHDSS-VTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES-AIVAAGYNYSPI-LLQGNESGWAHTRDLDAG 293 (377)
T ss_dssp SSCEEEEETTTE-EC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT-EEEEEESSSSEE-EECCCC---CCSBCCCSC
T ss_pred CCEEEEEeCCCc-EEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEeCCCceEEEeeeccc
Confidence 999999999998 999999987642 67788899999999999999 688888866655 77665222000 00
Q ss_pred ---C-------------------------------------CCCeeeccCCCceeEEEEcCCCCc----eEEEEcCCcEE
Q 035558 214 ---G-------------------------------------LDPILAYTAGAEIEQLQWSSSQPD----WVAIAFSTKLQ 249 (253)
Q Consensus 214 ---~-------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~i~ 249 (253)
. ........|...|+++++.+.... +++++.|+.|+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~ 373 (377)
T 3dwl_C 294 TSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVV 373 (377)
T ss_dssp CCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEE
T ss_pred ccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEE
Confidence 0 000011239999999998776543 88999999999
Q ss_pred EEEC
Q 035558 250 ILRV 253 (253)
Q Consensus 250 vw~l 253 (253)
+|+|
T Consensus 374 iWdl 377 (377)
T 3dwl_C 374 LWTL 377 (377)
T ss_dssp EECC
T ss_pred EecC
Confidence 9986
No 76
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=9.5e-35 Score=231.15 Aligned_cols=230 Identities=14% Similarity=0.201 Sum_probs=191.2
Q ss_pred ceEEeec-C-cEEEEEccCCc--cccceeeeecCCCCccccCCeeEEEecCCC----C---CEEEEEeCCCeEEEEeccC
Q 035558 6 DLLATSS-D-FLRVWRISDED--RRVELKSLLNGNKNSEYCGPLTSFDWNEAE----P---RRIGTSSIDTTCTIWDIER 74 (253)
Q Consensus 6 ~~l~~~~-~-~v~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~---~~l~~~~~dg~i~vwd~~~ 74 (253)
.+|++++ + .|++|++.... ........+.+|. .+|.+++|+ ++ + ++|++++.||.|++||+.+
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~-~~~~~~g~~~~~l~s~~~dg~i~iw~~~~ 100 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK-----SGLHHVDVL-QAIERDAFELCLVATTSFSGDLLFYRITR 100 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCT-----TCEEEEEEE-EEEETTTEEEEEEEEEETTSCEEEEEEEE
T ss_pred CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCC-----CcEEEEEEe-cccccCCccccEEEEEcCCCCEEEEEccC
Confidence 5777776 5 99999998861 1123677888898 899999999 77 8 9999999999999999998
Q ss_pred cee-----eeeeecc-----cccEEEEEec-----CCCe-EEEEeCCCcEEEEEcCC------CCCee-----eeec---
Q 035558 75 EAV-----DTQLIAH-----DKEVYDIAWG-----GVGV-FASVSADGSVRVFDLRD------KEHST-----IIYE--- 124 (253)
Q Consensus 75 ~~~-----~~~~~~~-----~~~v~~~~~~-----~~~~-l~~~~~dg~i~i~d~~~------~~~~~-----~~~~--- 124 (253)
++. ...+..| ...|.+++|+ ++++ |++++.||.|++||+++ .+... .+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (397)
T 1sq9_A 101 EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVE 180 (397)
T ss_dssp CTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEEC
T ss_pred CcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeec
Confidence 876 7788888 5999999998 4678 99999999999999998 55433 2211
Q ss_pred -cCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc---c---ccceeEEEEecCCCCeEEEecCC-
Q 035558 125 -SSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR---H---QASVNAIAWAPHSSCHICTAGDD- 196 (253)
Q Consensus 125 -~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~---~---~~~i~~~~~~~~~~~~l~~~~~d- 196 (253)
...+...+.+++|+| ++ ++++++.++. |++||+++.. ++..+.. | ...|.+++|+|++ .+|++++.|
T Consensus 181 ~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~-i~i~d~~~~~-~~~~~~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~ 255 (397)
T 1sq9_A 181 SPMTPSQFATSVDISE-RG-LIATGFNNGT-VQISELSTLR-PLYNFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSN 255 (397)
T ss_dssp CSSSSCCCCCEEEECT-TS-EEEEECTTSE-EEEEETTTTE-EEEEEECCC---CCCCCEEEEEECSST-TEEEEEEEET
T ss_pred cccCCCCCceEEEECC-Cc-eEEEEeCCCc-EEEEECCCCc-eeEEEeccccccccCCccceEEECCCC-CEEEEEecCC
Confidence 134566899999999 77 9999998888 9999999855 4777887 8 9999999999998 699999999
Q ss_pred --CcEEEEeccCCCCCCCCCCCCeeecc-------------CCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 197 --SQALIWDLSSMGQPVEGGLDPILAYT-------------AGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 197 --g~i~iwd~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
|.|++||+++.+... .... |...|.+++|+|+++++++++.|+.|++|++
T Consensus 256 ~~g~i~i~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 256 SFGCITLYETEFGERIG-------SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp TEEEEEEEETTTCCEEE-------EECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred CCceEEEEECCCCcccc-------eeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 999999999876433 4445 8999999999999999999999999999985
No 77
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.6e-34 Score=223.94 Aligned_cols=221 Identities=18% Similarity=0.213 Sum_probs=180.5
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce-----eeeeeecccccE
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA-----VDTQLIAHDKEV 88 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~v 88 (253)
.+.++.... +..++..+|++|. +.|++|+|+|.++++|++|+.|++|++||+.+.+ +...+.+|...|
T Consensus 17 ~~~~~~~~~--~~~~l~~tL~GH~-----~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V 89 (340)
T 4aow_A 17 NLYFQSMMT--EQMTLRGTLKGHN-----GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 89 (340)
T ss_dssp -----------CEEEEEEEECCCS-----SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCE
T ss_pred cEEEEEccC--CceEEEEEECCcc-----CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCE
Confidence 344444443 4456778899999 9999999995557899999999999999987653 456778999999
Q ss_pred EEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCe
Q 035558 89 YDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPV 167 (253)
Q Consensus 89 ~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~ 167 (253)
.+++|+ ++++|++++.|+.|++|+.......... ..+...+..+.+++ ++.++++++.|+. +++||+.......
T Consensus 90 ~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~l~s~s~d~~-~~~~d~~~~~~~~ 164 (340)
T 4aow_A 90 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF---VGHTKDVLSVAFSS-DNRQIVSGSRDKT-IKLWNTLGVCKYT 164 (340)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE---ECCSSCEEEEEECT-TSSCEEEEETTSC-EEEECTTSCEEEE
T ss_pred EEEEECCCCCEEEEEcccccceEEeecccceeeee---cCCCCceeEEEEee-cCccceeecCCCe-EEEEEeCCCceEE
Confidence 999999 9999999999999999999887633332 33444788888998 8899999999999 9999998765545
Q ss_pred eeecccccceeEEEEecCCC-CeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCC
Q 035558 168 VELQRHQASVNAIAWAPHSS-CHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFST 246 (253)
Q Consensus 168 ~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 246 (253)
.....|...+..++|++++. .++++++.|+.|++||+++..... ...+|..+|++++|+|+++++++++.|+
T Consensus 165 ~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~-------~~~~h~~~v~~~~~s~~~~~l~s~s~Dg 237 (340)
T 4aow_A 165 VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT-------NHIGHTGYLNTVTVSPDGSLCASGGKDG 237 (340)
T ss_dssp ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEE-------EECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceee-------EecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 66678999999999998753 367899999999999999876443 6678999999999999999999999999
Q ss_pred cEEEEEC
Q 035558 247 KLQILRV 253 (253)
Q Consensus 247 ~i~vw~l 253 (253)
.|++|++
T Consensus 238 ~i~iwd~ 244 (340)
T 4aow_A 238 QAMLWDL 244 (340)
T ss_dssp EEEEEET
T ss_pred eEEEEEe
Confidence 9999985
No 78
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-34 Score=229.51 Aligned_cols=231 Identities=16% Similarity=0.246 Sum_probs=190.5
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee--
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT-- 79 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-- 79 (253)
++.+|++++ + .|++|+... +....+.+|. ..|.+++|+ +++++|++++.||.|++||+++++.+.
T Consensus 119 ~~~~l~~~~~dg~i~i~~~~~-----~~~~~~~~~~-----~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 187 (425)
T 1r5m_A 119 DGNSIVTGVENGELRLWNKTG-----ALLNVLNFHR-----APIVSVKWN-KDGTHIISMDVENVTILWNVISGTVMQHF 187 (425)
T ss_dssp TSSEEEEEETTSCEEEEETTS-----CEEEEECCCC-----SCEEEEEEC-TTSSEEEEEETTCCEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCC-----CeeeeccCCC-----ccEEEEEEC-CCCCEEEEEecCCeEEEEECCCCcEEEEe
Confidence 567777776 5 999999443 7778888898 899999999 899999999999999999998765332
Q ss_pred ------------------------------------------------------eeecccccEEEEEec-CCCeEEEEeC
Q 035558 80 ------------------------------------------------------QLIAHDKEVYDIAWG-GVGVFASVSA 104 (253)
Q Consensus 80 ------------------------------------------------------~~~~~~~~v~~~~~~-~~~~l~~~~~ 104 (253)
.+..|...|.+++|+ ++++|++++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 267 (425)
T 1r5m_A 188 ELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD 267 (425)
T ss_dssp CCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET
T ss_pred eccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC
Confidence 233577889999999 9999999999
Q ss_pred CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEec
Q 035558 105 DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAP 184 (253)
Q Consensus 105 dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~ 184 (253)
||.|++||+++.+....+ ..+...+.+++|+| ++ ++++++.++. |++||+++.. .+..+..|...|.+++|+|
T Consensus 268 d~~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~-~~-~l~~~~~d~~-i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~ 340 (425)
T 1r5m_A 268 DGTLRIWHGGNGNSQNCF---YGHSQSIVSASWVG-DD-KVISCSMDGS-VRLWSLKQNT-LLALSIVDGVPIFAGRISQ 340 (425)
T ss_dssp TSCEEEECSSSBSCSEEE---CCCSSCEEEEEEET-TT-EEEEEETTSE-EEEEETTTTE-EEEEEECTTCCEEEEEECT
T ss_pred CCEEEEEECCCCccceEe---cCCCccEEEEEECC-CC-EEEEEeCCCc-EEEEECCCCc-EeEecccCCccEEEEEEcC
Confidence 999999999987754443 34666999999999 66 9999999988 9999998865 4778888999999999999
Q ss_pred CCCCeEEEecCCCcEEEEeccCCCCCCCC-------------CCCCeeeccCCC--ceeEEEEcCCCCceEEEEcCCcEE
Q 035558 185 HSSCHICTAGDDSQALIWDLSSMGQPVEG-------------GLDPILAYTAGA--EIEQLQWSSSQPDWVAIAFSTKLQ 249 (253)
Q Consensus 185 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~i~ 249 (253)
++ .+|++++.||.|++||+++...+... ......+..|.. .|.+++|+|+++++++++.|+.|+
T Consensus 341 ~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 419 (425)
T 1r5m_A 341 DG-QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGS 419 (425)
T ss_dssp TS-SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCE
T ss_pred CC-CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEE
Confidence 99 69999999999999999876511000 001235556755 999999999999888999999999
Q ss_pred EEEC
Q 035558 250 ILRV 253 (253)
Q Consensus 250 vw~l 253 (253)
+|++
T Consensus 420 iw~~ 423 (425)
T 1r5m_A 420 VVAI 423 (425)
T ss_dssp EEEC
T ss_pred EEee
Confidence 9986
No 79
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2e-34 Score=226.53 Aligned_cols=227 Identities=18% Similarity=0.275 Sum_probs=180.7
Q ss_pred CceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558 5 PDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI 82 (253)
Q Consensus 5 ~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 82 (253)
+.+|++++ + .|++|++... .......+.+|. ..|++++|+ +++++|++++.||.|++||+++++... +.
T Consensus 54 g~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~h~-----~~v~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~ 124 (368)
T 3mmy_A 54 GNFLIAGSWANDVRCWEVQDS--GQTIPKAQQMHT-----GPVLDVCWS-DDGSKVFTASCDKTAKMWDLSSNQAIQ-IA 124 (368)
T ss_dssp SEEEEEEETTSEEEEEEECTT--SCEEEEEEEECS-----SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEE-EE
T ss_pred ceEEEEECCCCcEEEEEcCCC--CceeEEEecccc-----CCEEEEEEC-cCCCEEEEEcCCCcEEEEEcCCCCcee-ec
Confidence 78888887 4 9999999862 113337788898 899999999 799999999999999999999888666 56
Q ss_pred cccccEEEEEe--c-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccC---------------------------------
Q 035558 83 AHDKEVYDIAW--G-GVGVFASVSADGSVRVFDLRDKEHSTIIYESS--------------------------------- 126 (253)
Q Consensus 83 ~~~~~v~~~~~--~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------------------------------- 126 (253)
.|...|.+++| + ++.+|++++.||.|++||+++++....+....
T Consensus 125 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 204 (368)
T 3mmy_A 125 QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEF 204 (368)
T ss_dssp ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEE
T ss_pred cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchh
Confidence 69999999999 7 88899999999999999999876443332110
Q ss_pred -----CCCCCeeEEEeeCCCCCE----EEEEEeCCCeEEEEECCCCC--CCeeeeccccc------------ceeEEEEe
Q 035558 127 -----EPDTPLVRLGWNKQDPRY----MATIIMDSAKVVVLDIRFPT--LPVVELQRHQA------------SVNAIAWA 183 (253)
Q Consensus 127 -----~~~~~i~~~~~~~~~~~~----l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~------------~i~~~~~~ 183 (253)
.......++++.+ +... +++++.++. |++||++... ..+..+..|.. .|++++|+
T Consensus 205 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 282 (368)
T 3mmy_A 205 RRIESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGR-VAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFH 282 (368)
T ss_dssp EECCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSE-EEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEEC
T ss_pred hhccccccCCCceEEEcc-cCCCCCCeEEEecCCCc-EEEEecCCCCccccceeeeeeecccccccccccccceEEEEEe
Confidence 1112344555544 3333 888888888 9999998763 23566677766 79999999
Q ss_pred cCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEE
Q 035558 184 PHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQI 250 (253)
Q Consensus 184 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~v 250 (253)
|++ ++|++++.||.|++||+++++... .+..|..+|.+++|+|+++++++++.|+..+.
T Consensus 283 p~~-~~l~s~~~dg~i~iwd~~~~~~~~-------~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~ 341 (368)
T 3mmy_A 283 PVH-GTLATVGSDGRFSFWDKDARTKLK-------TSEQLDQPISACCFNHNGNIFAYASSYDWSKG 341 (368)
T ss_dssp TTT-CCEEEEETTSCEEEEETTTTEEEE-------ECCCCSSCEEEEEECTTSSCEEEEECCCSTTC
T ss_pred cCC-CEEEEEccCCeEEEEECCCCcEEE-------EecCCCCCceEEEECCCCCeEEEEeccccccc
Confidence 999 699999999999999999876433 66688999999999999999999988875443
No 80
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-34 Score=230.41 Aligned_cols=205 Identities=14% Similarity=0.133 Sum_probs=166.6
Q ss_pred CCeeEEEecCCCCCEE-EEEeCCCeEEEEecc--Cceeeeeee--cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCC
Q 035558 43 GPLTSFDWNEAEPRRI-GTSSIDTTCTIWDIE--REAVDTQLI--AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDK 116 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l-~~~~~dg~i~vwd~~--~~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~ 116 (253)
..|.+++|+ +++++| ++|+.||.|++||+. +++.+..+. .|...|.+++|+ ++++|++++.+|.|++|++.+.
T Consensus 103 ~~v~~~~~s-~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~ 181 (450)
T 2vdu_B 103 SYIRNLRLT-SDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSI 181 (450)
T ss_dssp CCEEEEEEC-TTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC
T ss_pred CceEEEEEc-CCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCc
Confidence 479999999 788885 899999999999999 788777776 567899999999 9999999999999999999887
Q ss_pred CCee-eeeccCCCCCCeeEEEeeCCC---CCEEEEEEeCCCeEEEEECCCCCCCeee-ecccccceeEEEEecCCCCeEE
Q 035558 117 EHST-IIYESSEPDTPLVRLGWNKQD---PRYMATIIMDSAKVVVLDIRFPTLPVVE-LQRHQASVNAIAWAPHSSCHIC 191 (253)
Q Consensus 117 ~~~~-~~~~~~~~~~~i~~~~~~~~~---~~~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~ 191 (253)
.... .......|...|.+++|+| + +.+|++++.|+. |++||+++... +.. +.+|...|.+++|+ ++ .+|+
T Consensus 182 ~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~-i~vwd~~~~~~-~~~~~~~h~~~v~~~~~s-d~-~~l~ 256 (450)
T 2vdu_B 182 PEEKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEH-IKISHYPQCFI-VDKWLFGHKHFVSSICCG-KD-YLLL 256 (450)
T ss_dssp CCSSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSC-EEEEEESCTTC-EEEECCCCSSCEEEEEEC-ST-TEEE
T ss_pred ccccccceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCc-EEEEECCCCce-eeeeecCCCCceEEEEEC-CC-CEEE
Confidence 6443 2223345667999999999 7 889999999998 99999998664 555 66899999999999 88 6999
Q ss_pred EecCCCcEEEEeccCCCCCCCCCCC----C--------------eeeccCCCceeEEEEcCCCCceEEEE-cCCcEEEEE
Q 035558 192 TAGDDSQALIWDLSSMGQPVEGGLD----P--------------ILAYTAGAEIEQLQWSSSQPDWVAIA-FSTKLQILR 252 (253)
Q Consensus 192 ~~~~dg~i~iwd~~~~~~~~~~~~~----~--------------~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~vw~ 252 (253)
+++.|+.|++||+++++........ + .........|.+++|+|+++++++++ .++.|++|+
T Consensus 257 s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~ 336 (450)
T 2vdu_B 257 SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE 336 (450)
T ss_dssp EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 9999999999999987633200000 0 00002346799999999999888888 899999998
Q ss_pred C
Q 035558 253 V 253 (253)
Q Consensus 253 l 253 (253)
+
T Consensus 337 ~ 337 (450)
T 2vdu_B 337 M 337 (450)
T ss_dssp E
T ss_pred e
Confidence 5
No 81
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-34 Score=226.88 Aligned_cols=213 Identities=19% Similarity=0.304 Sum_probs=179.6
Q ss_pred ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEecc--CceeeeeeecccccEEEEEec-C--CCeEEEE
Q 035558 28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE--REAVDTQLIAHDKEVYDIAWG-G--VGVFASV 102 (253)
Q Consensus 28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~-~--~~~l~~~ 102 (253)
++...+++|. .+|++++|+ +++++|++|+.||.|++||+. +.+.+..+.+|...|++++|+ + +++|+++
T Consensus 2 ~~~~~~~~h~-----~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 75 (379)
T 3jrp_A 2 SMVVIANAHN-----ELIHDAVLD-YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASC 75 (379)
T ss_dssp ---CCEEECC-----CCEEEEEEC-SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred CccEEecCCc-----ccEEEEEEc-CCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEe
Confidence 4567788999 899999999 899999999999999999998 566778888999999999998 5 8999999
Q ss_pred eCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC--CCEEEEEEeCCCeEEEEECCCCC-CCeeeecccccceeE
Q 035558 103 SADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD--PRYMATIIMDSAKVVVLDIRFPT-LPVVELQRHQASVNA 179 (253)
Q Consensus 103 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~i~~ 179 (253)
+.||.|++||+++++.. .......+...|.+++|+| + +.++++++.++. |++||++... .....+..|...|.+
T Consensus 76 ~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~~~~~~~~v~~ 152 (379)
T 3jrp_A 76 SYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGK-VSVVEFKENGTTSPIIIDAHAIGVNS 152 (379)
T ss_dssp ETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSE-EEEEECCTTSCCCEEEEECCTTCEEE
T ss_pred ccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCC-CCCCCEEEEecCCCc-EEEEecCCCCceeeEEecCCCCceEE
Confidence 99999999999987522 2333445677999999999 6 899999999998 9999998864 235567789999999
Q ss_pred EEEec-------------CCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC---CCceEEEE
Q 035558 180 IAWAP-------------HSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS---QPDWVAIA 243 (253)
Q Consensus 180 ~~~~~-------------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~ 243 (253)
++|+| ++ .+|++++.||.|++||++...... .......+|...|.+++|+|+ +..+++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~ 228 (379)
T 3jrp_A 153 ASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTY---VLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 228 (379)
T ss_dssp EEECCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEE---EEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred EEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcce---eeEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence 99999 56 699999999999999998765332 112355679999999999999 78888999
Q ss_pred cCCcEEEEEC
Q 035558 244 FSTKLQILRV 253 (253)
Q Consensus 244 ~~~~i~vw~l 253 (253)
.|+.|++|++
T Consensus 229 ~dg~i~iwd~ 238 (379)
T 3jrp_A 229 QDRTCIIWTQ 238 (379)
T ss_dssp TTSCEEEEEE
T ss_pred CCCEEEEEeC
Confidence 9999999984
No 82
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-34 Score=224.84 Aligned_cols=225 Identities=12% Similarity=0.078 Sum_probs=174.0
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEecc--------
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE-------- 73 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~-------- 73 (253)
++.+|++|+ | .|++||+.++ +.+..+. . ..|.++.|+ ++ +++++.|++|++|+..
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~----~~~~~~~--~-----~~v~~~~~~-~~---~~s~s~D~~i~~w~~~~~~~~~~~ 111 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDS----KTITTIT--T-----PNPRTGGEH-PA---IISRGPCNRLLLLYPGNQITILDS 111 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSS----SCEEEEE--E-----ECCCTTCCC-CS---EEEECSTTEEEEEETTTEEEEEET
T ss_pred CCCEEEEECCCCcEEEEECCCC----cEEEEEe--c-----CCceeeeeC-Cc---eEEecCCCeEEEEEccCceEEeec
Confidence 456788887 5 9999999987 5555555 2 578889998 44 9999999999999765
Q ss_pred -Cceeeeeee-cccccEEEEEec---CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558 74 -REAVDTQLI-AHDKEVYDIAWG---GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI 148 (253)
Q Consensus 74 -~~~~~~~~~-~~~~~v~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 148 (253)
+++.+..+. +|..+|.+++|+ +++++++++.||+|++||+++++..... ...+...+.+++|+| ++.++++|
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~--~~~~~~~i~~~~~~p-dg~~lasg 188 (343)
T 3lrv_A 112 KTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH--SAKSDVEYSSGVLHK-DSLLLALY 188 (343)
T ss_dssp TTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEE--CCCSSCCCCEEEECT-TSCEEEEE
T ss_pred CCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEE--ecCCCCceEEEEECC-CCCEEEEE
Confidence 334344443 566899999998 5789999999999999999988753222 223444799999999 99999999
Q ss_pred EeCCCeEEEEECCCCCCCeeeecc-cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCce
Q 035558 149 IMDSAKVVVLDIRFPTLPVVELQR-HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEI 227 (253)
Q Consensus 149 ~~~~~~i~~~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v 227 (253)
+.|+. |++||+++.......+.. |..+|++++|+|++ .+|++++ |+.|++||+++...... ......|..++
T Consensus 189 ~~dg~-i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g-~~l~s~~-~~~v~iwd~~~~~~~~~----~~~~~~~~~~~ 261 (343)
T 3lrv_A 189 SPDGI-LDVYNLSSPDQASSRFPVDEEAKIKEVKFADNG-YWMVVEC-DQTVVCFDLRKDVGTLA----YPTYTIPEFKT 261 (343)
T ss_dssp CTTSC-EEEEESSCTTSCCEECCCCTTSCEEEEEECTTS-SEEEEEE-SSBEEEEETTSSTTCBS----SCCCBC-----
T ss_pred cCCCE-EEEEECCCCCCCccEEeccCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEEcCCCCccee----ecccccccccc
Confidence 99999 999999987753367777 99999999999999 6999999 55999999998764420 01111233444
Q ss_pred --eEEEEcCCCCceEEEEc-CCcEEEEEC
Q 035558 228 --EQLQWSSSQPDWVAIAF-STKLQILRV 253 (253)
Q Consensus 228 --~~~~~~~~~~~~~~~~~-~~~i~vw~l 253 (253)
.+++|+|+++++++++. ++.+++|++
T Consensus 262 ~~~~~~~~~~g~~l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 262 GTVTYDIDDSGKNMIAYSNESNSLTIYKF 290 (343)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred cceEEEECCCCCEEEEecCCCCcEEEEEE
Confidence 46999999998888887 999999963
No 83
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.2e-33 Score=227.75 Aligned_cols=220 Identities=18% Similarity=0.337 Sum_probs=192.8
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
++.+|++|+ + .|++||+.++ +....+.+|. ..|.+++| ++++|++|+.||.|++||+++++.+..+
T Consensus 142 d~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~h~-----~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 209 (435)
T 1p22_A 142 DDQKIVSGLRDNTIKIWDKNTL----ECKRILTGHT-----GSVLCLQY---DERVIITGSSDSTVRVWDVNTGEMLNTL 209 (435)
T ss_dssp CSSEEEEEESSSCEEEEESSSC----CEEEEECCCS-----SCEEEEEC---CSSEEEEEETTSCEEEEESSSCCEEEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCC----eEEEEEcCCC-----CcEEEEEE---CCCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence 566777777 5 9999999987 7888899998 89999998 4789999999999999999999999999
Q ss_pred ecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558 82 IAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR 161 (253)
Q Consensus 82 ~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~ 161 (253)
.+|...|.+++|+ ++.+++|+.||.|++||++++...........+...|.+++| +++++++++.|+. |++||++
T Consensus 210 ~~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~-i~vwd~~ 284 (435)
T 1p22_A 210 IHHCEAVLHLRFN-NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRT-IKVWNTS 284 (435)
T ss_dssp CCCCSCEEEEECC-TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSE-EEEEETT
T ss_pred cCCCCcEEEEEEc-CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCe-EEEEECC
Confidence 9999999999996 669999999999999999988765544555677789999999 5689999999998 9999999
Q ss_pred CCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558 162 FPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA 241 (253)
Q Consensus 162 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 241 (253)
+.. .+..+..|...|.+++|+ + .++++|+.||.|++||++++.... ...+|...|.+++| ++..+++
T Consensus 285 ~~~-~~~~~~~~~~~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~~~~~~-------~~~~h~~~v~~~~~--~~~~l~s 351 (435)
T 1p22_A 285 TCE-FVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGACLR-------VLEGHEELVRCIRF--DNKRIVS 351 (435)
T ss_dssp TCC-EEEEEECCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCCEEE-------EECCCSSCEEEEEC--CSSEEEE
T ss_pred cCc-EEEEEcCCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCCCCEEE-------EEeCCcCcEEEEEe--cCCEEEE
Confidence 865 488889999999999995 4 599999999999999999876443 66789999999999 5667899
Q ss_pred EEcCCcEEEEEC
Q 035558 242 IAFSTKLQILRV 253 (253)
Q Consensus 242 ~~~~~~i~vw~l 253 (253)
++.|+.|++|++
T Consensus 352 g~~dg~i~vwd~ 363 (435)
T 1p22_A 352 GAYDGKIKVWDL 363 (435)
T ss_dssp EETTSCEEEEEH
T ss_pred EeCCCcEEEEEC
Confidence 999999999984
No 84
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.7e-34 Score=230.47 Aligned_cols=236 Identities=15% Similarity=0.230 Sum_probs=187.5
Q ss_pred CCCCCceEEeec-C-cEEEEEccCCccc---cceeeeecCCCCccccCCeeEEEecCCCC-CEEEEEeCCCeEEEEeccC
Q 035558 1 ECQKPDLLATSS-D-FLRVWRISDEDRR---VELKSLLNGNKNSEYCGPLTSFDWNEAEP-RRIGTSSIDTTCTIWDIER 74 (253)
Q Consensus 1 sp~~~~~l~~~~-~-~v~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~ 74 (253)
+|.++.+|++++ | .|++|++..+... .+....+.+|. ..|.+++|+ +++ ++|++++.||.|++||+++
T Consensus 90 ~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~-p~~~~~l~s~~~dg~i~iwd~~~ 163 (402)
T 2aq5_A 90 CPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT-----KRVGIVAWH-PTAQNVLLSAGCDNVILVWDVGT 163 (402)
T ss_dssp CTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCS-----SCEEEEEEC-SSBTTEEEEEETTSCEEEEETTT
T ss_pred CCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCC-----CeEEEEEEC-cCCCCEEEEEcCCCEEEEEECCC
Confidence 355788888888 4 9999999875111 14567788898 899999999 665 7999999999999999999
Q ss_pred ceeeeee--ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCC-CeeEEEeeCCCCCEEEEE--
Q 035558 75 EAVDTQL--IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDT-PLVRLGWNKQDPRYMATI-- 148 (253)
Q Consensus 75 ~~~~~~~--~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~~~-- 148 (253)
++.+..+ ..|...|.+++|+ ++++|++++.||.|++||+++++....+. ..+.+ .+.++.|+| ++.+++++
T Consensus 164 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~l~~g~~ 240 (402)
T 2aq5_A 164 GAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD--RPHEGTRPVHAVFVS-EGKILTTGFS 240 (402)
T ss_dssp TEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE--CSSCSSSCCEEEECS-TTEEEEEEEC
T ss_pred CCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeec--cCCCCCcceEEEEcC-CCcEEEEecc
Confidence 9999888 7899999999999 99999999999999999999886443331 23333 489999999 88889888
Q ss_pred -EeCCCeEEEEECCCCCCCeeeec-ccccceeEEEEecCCCCeEE-EecCCCcEEEEeccCCCCCCCCCCCCeeeccCCC
Q 035558 149 -IMDSAKVVVLDIRFPTLPVVELQ-RHQASVNAIAWAPHSSCHIC-TAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGA 225 (253)
Q Consensus 149 -~~~~~~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 225 (253)
+.++. |++||+++...++.... .|...+.+++|+|++. +|+ +++.||.|++||+.+.+... .......|..
T Consensus 241 ~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~g~~dg~i~i~d~~~~~~~~----~~l~~~~~~~ 314 (402)
T 2aq5_A 241 RMSERQ-VALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTN-IVYLCGKGDSSIRYFEITSEAPFL----HYLSMFSSKE 314 (402)
T ss_dssp TTCCEE-EEEEETTBCSSCSEEEECCCCSSCEEEEEETTTT-EEEEEETTCSCEEEEEECSSTTCE----EEEEEECCSS
T ss_pred CCCCce-EEEEcCccccCCceEEeccCCCceeEEEEcCCCC-EEEEEEcCCCeEEEEEecCCCcce----EeecccccCC
Confidence 57777 99999998765444443 5677899999999994 664 67789999999999876311 0122334679
Q ss_pred ceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 226 EIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 226 ~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
+|.+++|+|++..++ +.++.+++|++
T Consensus 315 ~v~~~~~sp~~~~~~--s~~~~~~~~~l 340 (402)
T 2aq5_A 315 SQRGMGYMPKRGLEV--NKCEIARFYKL 340 (402)
T ss_dssp CCSEEEECCGGGSCG--GGTEEEEEEEE
T ss_pred cccceEEecccccce--ecceeEEEEEc
Confidence 999999999987544 35668999974
No 85
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.2e-33 Score=224.07 Aligned_cols=211 Identities=11% Similarity=0.205 Sum_probs=179.9
Q ss_pred ceeeeecCCCCccccCCeeEEEecCCCC-CEEEEEeCCCeEEEEeccCceeeeeee--cccccEEEEEec--CCCeEEEE
Q 035558 28 ELKSLLNGNKNSEYCGPLTSFDWNEAEP-RRIGTSSIDTTCTIWDIEREAVDTQLI--AHDKEVYDIAWG--GVGVFASV 102 (253)
Q Consensus 28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~--~~~~l~~~ 102 (253)
+....+.+|. ..|++++|+ +++ ++|++|+.||.|++||+.+++....+. +|...|.+++|+ ++++|+++
T Consensus 64 ~~~~~~~~h~-----~~v~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 137 (383)
T 3ei3_B 64 KLHRTASPFD-----RRVTSLEWH-PTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS 137 (383)
T ss_dssp EEEEEECCCS-----SCEEEEEEC-SSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEE
T ss_pred ceEEeccCCC-----CCEEEEEEC-CCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEE
Confidence 5567788888 899999999 676 999999999999999999887666655 699999999999 56899999
Q ss_pred eCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEE
Q 035558 103 SADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAW 182 (253)
Q Consensus 103 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~ 182 (253)
+.|+.|++||+++ .....+.....+...|.+++|+| ++.+|++++.++. |++||++ ..++..+..|...|.+++|
T Consensus 138 ~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~-i~i~d~~--~~~~~~~~~h~~~v~~~~~ 212 (383)
T 3ei3_B 138 SIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGR-LLLLGLD--GHEIFKEKLHKAKVTHAEF 212 (383)
T ss_dssp ETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSE-EEEEETT--SCEEEEEECSSSCEEEEEE
T ss_pred eCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCC-EEEEECC--CCEEEEeccCCCcEEEEEE
Confidence 9999999999996 33444444445557899999999 8999999999998 9999995 3358888999999999999
Q ss_pred ecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcC-CCCceEEEEcCCcEEEEEC
Q 035558 183 APHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS-SQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 183 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~vw~l 253 (253)
+|++..+|++++.|+.|++||+++..... ......+|...|.+++|+| ++..+++++.|+.|++|++
T Consensus 213 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~ 280 (383)
T 3ei3_B 213 NPRCDWLMATSSVDATVKLWDLRNIKDKN----SYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSS 280 (383)
T ss_dssp CSSCTTEEEEEETTSEEEEEEGGGCCSTT----CEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEET
T ss_pred CCCCCCEEEEEeCCCEEEEEeCCCCCccc----ceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEEC
Confidence 99994489999999999999999854321 1234447999999999999 9998999999999999985
No 86
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-33 Score=216.73 Aligned_cols=220 Identities=15% Similarity=0.153 Sum_probs=186.3
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc---eee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE---AVD 78 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~ 78 (253)
++.+|++++ + .|++||+... +....+..|. ..|.+++|+ +++++|++|+.||.|++|++... +.+
T Consensus 28 ~~~~l~s~~~dg~v~vw~~~~~----~~~~~~~~~~-----~~v~~~~~~-~~~~~l~~~~~dg~i~~~~~~~~~~~~~~ 97 (313)
T 3odt_A 28 DDSKVASVSRDGTVRLWSKDDQ----WLGTVVYTGQ-----GFLNSVCYD-SEKELLLFGGKDTMINGVPLFATSGEDPL 97 (313)
T ss_dssp ETTEEEEEETTSEEEEEEESSS----EEEEEEEECS-----SCEEEEEEE-TTTTEEEEEETTSCEEEEETTCCTTSCC-
T ss_pred CCCEEEEEEcCCcEEEEECCCC----EEEEEeecCC-----ccEEEEEEC-CCCCEEEEecCCCeEEEEEeeecCCCCcc
Confidence 456677776 5 9999999886 7778888888 899999999 89999999999999999998754 456
Q ss_pred eeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558 79 TQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL 158 (253)
Q Consensus 79 ~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~ 158 (253)
..+.+|...|.+++| +++++++++.||.|++|| ..+ .......+...+.+++|.|.+++++++++.++. |++|
T Consensus 98 ~~~~~~~~~i~~~~~-~~~~l~~~~~d~~i~~~d--~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i~i~ 170 (313)
T 3odt_A 98 YTLIGHQGNVCSLSF-QDGVVISGSWDKTAKVWK--EGS---LVYNLQAHNASVWDAKVVSFSENKFLTASADKT-IKLW 170 (313)
T ss_dssp CEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEE--TTE---EEEEEECCSSCEEEEEEEETTTTEEEEEETTSC-EEEE
T ss_pred cchhhcccCEEEEEe-cCCEEEEEeCCCCEEEEc--CCc---EEEecccCCCceeEEEEccCCCCEEEEEECCCC-EEEE
Confidence 778889999999999 588999999999999999 232 233334566799999999878999999999999 9999
Q ss_pred ECCCCCCCeeeecc-cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC
Q 035558 159 DIRFPTLPVVELQR-HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP 237 (253)
Q Consensus 159 d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 237 (253)
|.. .....+.. |...+.+++|+|++ . +++++.||.|++||+++++... ....|..+|.+++|+|++
T Consensus 171 d~~---~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~~~~-------~~~~~~~~i~~~~~~~~~- 237 (313)
T 3odt_A 171 QND---KVIKTFSGIHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGDVLR-------TYEGHESFVYCIKLLPNG- 237 (313)
T ss_dssp ETT---EEEEEECSSCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTTCCEEE-------EEECCSSCEEEEEECTTS-
T ss_pred ecC---ceEEEEeccCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCchhhhh-------hhhcCCceEEEEEEecCC-
Confidence 943 23566666 88999999999998 4 9999999999999999876433 666899999999999999
Q ss_pred ceEEEEcCCcEEEEEC
Q 035558 238 DWVAIAFSTKLQILRV 253 (253)
Q Consensus 238 ~~~~~~~~~~i~vw~l 253 (253)
.+++++.|+.|++|++
T Consensus 238 ~l~~~~~dg~v~iwd~ 253 (313)
T 3odt_A 238 DIVSCGEDRTVRIWSK 253 (313)
T ss_dssp CEEEEETTSEEEEECT
T ss_pred CEEEEecCCEEEEEEC
Confidence 5999999999999985
No 87
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.1e-33 Score=253.76 Aligned_cols=228 Identities=15% Similarity=0.204 Sum_probs=197.5
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
+++.+|++++ + .|++||+.++ +....+.+|. ..|.+++|+ +++++|++|+.||.|++||+.+++.+..
T Consensus 625 ~~~~~l~s~~~d~~i~vw~~~~~----~~~~~~~~h~-----~~v~~~~~s-~~~~~l~s~~~d~~v~vwd~~~~~~~~~ 694 (1249)
T 3sfz_A 625 QDGQRIASCGADKTLQVFKAETG----EKLLDIKAHE-----DEVLCCAFS-SDDSYIATCSADKKVKIWDSATGKLVHT 694 (1249)
T ss_dssp TTSSEEEEEETTSCEEEEETTTC----CEEEEECCCS-----SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCC----CEEEEeccCC-----CCEEEEEEe-cCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence 3677888877 4 9999999987 7888899998 899999999 8999999999999999999999999999
Q ss_pred eecccccEEEEEec---CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558 81 LIAHDKEVYDIAWG---GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV 157 (253)
Q Consensus 81 ~~~~~~~v~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~ 157 (253)
+.+|...|.+++|+ +..++++++.||.|++||+++++... ....|...|.+++|+| +++++++++.|+. |++
T Consensus 695 ~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~---~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~-v~v 769 (1249)
T 3sfz_A 695 YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN---TMFGHTNSVNHCRFSP-DDELLASCSADGT-LRL 769 (1249)
T ss_dssp EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE---EECCCSSCEEEEEECS-STTEEEEEESSSE-EEE
T ss_pred EcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh---eecCCCCCEEEEEEec-CCCEEEEEECCCe-EEE
Confidence 99999999999998 34589999999999999999887433 3346777999999999 9999999999998 999
Q ss_pred EECCCCCCC-----------------------------------------------------eee-ecccccceeEEEEe
Q 035558 158 LDIRFPTLP-----------------------------------------------------VVE-LQRHQASVNAIAWA 183 (253)
Q Consensus 158 ~d~~~~~~~-----------------------------------------------------~~~-~~~~~~~i~~~~~~ 183 (253)
||+++.... ... ..+|...|.+++|+
T Consensus 770 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s 849 (1249)
T 3sfz_A 770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS 849 (1249)
T ss_dssp EEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC
T ss_pred EeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc
Confidence 998754210 001 12677889999999
Q ss_pred cCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 184 PHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 184 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
|++ .++++++.||.|++||+.++... ....+|...|.+++|+|+++.+++++.|+.+++|++
T Consensus 850 p~~-~~l~~~~~dg~v~vwd~~~~~~~-------~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~ 911 (1249)
T 3sfz_A 850 PYD-HLAVIALSQYCVELWNIDSRLKV-------ADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET 911 (1249)
T ss_dssp SST-TEEEEECSSSCEEEEETTTTEEE-------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEH
T ss_pred CCC-CEEEEEeCCCeEEEEEcCCCcee-------eecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 999 69999999999999999986543 367789999999999999999999999999999973
No 88
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-33 Score=212.76 Aligned_cols=221 Identities=17% Similarity=0.225 Sum_probs=185.5
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
++.+|++++ + .|++|++... ...+....+.+|. ..|.+++|+ ++++++++.||.|++|| .++....+
T Consensus 70 ~~~~l~~~~~dg~i~~~~~~~~-~~~~~~~~~~~~~-----~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~ 138 (313)
T 3odt_A 70 EKELLLFGGKDTMINGVPLFAT-SGEDPLYTLIGHQ-----GNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNL 138 (313)
T ss_dssp TTTEEEEEETTSCEEEEETTCC-TTSCC-CEECCCS-----SCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEE
T ss_pred CCCEEEEecCCCeEEEEEeeec-CCCCcccchhhcc-----cCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEec
Confidence 566777776 5 9999999774 3345677788888 899999995 67999999999999999 57778888
Q ss_pred ecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 82 IAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 82 ~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
..|...+.+++|. +++.+++++.||.|++||.... .......+...+.+++|+| ++. +++++.++. |++||
T Consensus 139 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~-i~i~d 211 (313)
T 3odt_A 139 QAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV----IKTFSGIHNDVVRHLAVVD-DGH-FISCSNDGL-IKLVD 211 (313)
T ss_dssp ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE----EEEECSSCSSCEEEEEEEE-TTE-EEEEETTSE-EEEEE
T ss_pred ccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCce----EEEEeccCcccEEEEEEcC-CCe-EEEccCCCe-EEEEE
Confidence 8999999999998 7899999999999999993321 1112223666999999999 666 888898888 99999
Q ss_pred CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558 160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW 239 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 239 (253)
+++.+ ++..+..|...|++++|+|++ .|++++.||.|++||+++++... ....|..+|.+++|+|+++ +
T Consensus 212 ~~~~~-~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~-------~~~~~~~~i~~~~~~~~~~-~ 280 (313)
T 3odt_A 212 MHTGD-VLRTYEGHESFVYCIKLLPNG--DIVSCGEDRTVRIWSKENGSLKQ-------VITLPAISIWSVDCMSNGD-I 280 (313)
T ss_dssp TTTCC-EEEEEECCSSCEEEEEECTTS--CEEEEETTSEEEEECTTTCCEEE-------EEECSSSCEEEEEECTTSC-E
T ss_pred CCchh-hhhhhhcCCceEEEEEEecCC--CEEEEecCCEEEEEECCCCceeE-------EEeccCceEEEEEEccCCC-E
Confidence 99865 488888999999999999998 58899999999999999876443 6677888999999999997 8
Q ss_pred EEEEcCCcEEEEEC
Q 035558 240 VAIAFSTKLQILRV 253 (253)
Q Consensus 240 ~~~~~~~~i~vw~l 253 (253)
++++.|+.|++|++
T Consensus 281 ~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 281 IVGSSDNLVRIFSQ 294 (313)
T ss_dssp EEEETTSCEEEEES
T ss_pred EEEeCCCcEEEEeC
Confidence 89999999999985
No 89
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.3e-33 Score=217.99 Aligned_cols=227 Identities=13% Similarity=0.103 Sum_probs=183.3
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCC-EEEEEeCCCeEEEEec-cCceeee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPR-RIGTSSIDTTCTIWDI-EREAVDT 79 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~-~~~~~~~ 79 (253)
++.+|++++ + .|++|++..+ ........+.+|. ..|++++|+ ++++ +|++|+.||.|++||+ ++++. .
T Consensus 22 ~~~~l~~~~~d~~v~iw~~~~~-~~~~~~~~~~~~~-----~~v~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~-~ 93 (342)
T 1yfq_A 22 SKSLLLITSWDGSLTVYKFDIQ-AKNVDLLQSLRYK-----HPLLCCNFI-DNTDLQIYVGTVQGEILKVDLIGSPSF-Q 93 (342)
T ss_dssp GGTEEEEEETTSEEEEEEEETT-TTEEEEEEEEECS-----SCEEEEEEE-ESSSEEEEEEETTSCEEEECSSSSSSE-E
T ss_pred CCCEEEEEcCCCeEEEEEeCCC-CccccceeeeecC-----CceEEEEEC-CCCCcEEEEEcCCCeEEEEEeccCCce-E
Confidence 556677766 5 9999999886 2112344555787 899999999 7899 9999999999999999 77654 6
Q ss_pred eeec--ccccEEEEEecCCCeEEEEeCCCcEEEEEcCC---------CCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558 80 QLIA--HDKEVYDIAWGGVGVFASVSADGSVRVFDLRD---------KEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI 148 (253)
Q Consensus 80 ~~~~--~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 148 (253)
.+.+ |...|.+++|+.++.+++++.|+.|++||+++ .+....+ .+...+.+++|+| ++ ++++
T Consensus 94 ~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~-~~--l~~~ 166 (342)
T 1yfq_A 94 ALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT----KVKNKIFTMDTNS-SR--LIVG 166 (342)
T ss_dssp ECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS----SSCCCEEEEEECS-SE--EEEE
T ss_pred eccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEE----eeCCceEEEEecC-Cc--EEEE
Confidence 6778 99999999998778999999999999999987 4432222 2566899999998 54 8888
Q ss_pred EeCCCeEEEEECCC-CCCC-eeeecccccceeEEEEec-CCCCeEEEecCCCcEEEEeccCC-----CCCCCCCCCCeee
Q 035558 149 IMDSAKVVVLDIRF-PTLP-VVELQRHQASVNAIAWAP-HSSCHICTAGDDSQALIWDLSSM-----GQPVEGGLDPILA 220 (253)
Q Consensus 149 ~~~~~~i~~~d~~~-~~~~-~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~ 220 (253)
+.++. |++||+++ .... ......|...+.+++|+| ++ .++++++.||.|++|++... .... ..+
T Consensus 167 ~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~------~~~ 238 (342)
T 1yfq_A 167 MNNSQ-VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNSSKR------FAF 238 (342)
T ss_dssp ESTTE-EEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCSTTCTTC------EEE
T ss_pred eCCCe-EEEEECCccccccceeeecCCCCceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCcccccccc------eee
Confidence 88888 99999998 5432 334556888999999999 98 69999999999999999876 1222 344
Q ss_pred ccCC---------CceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 221 YTAG---------AEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 221 ~~~~---------~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
..|. ..|.+++|+|+++++++++.|+.|++|++
T Consensus 239 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~ 280 (342)
T 1yfq_A 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280 (342)
T ss_dssp ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred ecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence 4554 49999999999999999999999999985
No 90
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.9e-33 Score=233.34 Aligned_cols=228 Identities=14% Similarity=0.184 Sum_probs=194.2
Q ss_pred CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCC-eeEEEecCC--CCCEEEEEeCCCeEEEEeccCc---
Q 035558 3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGP-LTSFDWNEA--EPRRIGTSSIDTTCTIWDIERE--- 75 (253)
Q Consensus 3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~--- 75 (253)
+++++|+++++ .|++|++.++....+....+.+|. .. |++++|+ | ++++|++|+.||.|++||+.++
T Consensus 28 pdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~-----~~~v~~~~~s-p~~~~~~l~s~~~dg~v~vw~~~~~~~~ 101 (615)
T 1pgu_A 28 PTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHG-----SSVVTTVKFS-PIKGSQYLCSGDESGKVIVWGWTFDKES 101 (615)
T ss_dssp TTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTT-----TSCEEEEEEC-SSTTCCEEEEEETTSEEEEEEEEEEGGG
T ss_pred CCCCEEEEecCCeEEEEECCCCCCccccceEEecCC-----CceEEEEEEC-cCCCCCEEEEecCCCEEEEEeCCCCccc
Confidence 46778888888 999999987423335778889998 88 9999999 7 9999999999999999999754
Q ss_pred -----eeeeeeecccccEEEEEec-CCCeEEEEeCC----CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCC-E
Q 035558 76 -----AVDTQLIAHDKEVYDIAWG-GVGVFASVSAD----GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPR-Y 144 (253)
Q Consensus 76 -----~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~ 144 (253)
+....+..|..+|.+++|+ ++++|++++.+ +.|++|| .++ .......+...|.+++|+| ++. .
T Consensus 102 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~---~~~~~~~~~~~v~~~~~~~-~~~~~ 175 (615)
T 1pgu_A 102 NSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGN---SLGEVSGHSQRINACHLKQ-SRPMR 175 (615)
T ss_dssp TEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCC---EEEECCSCSSCEEEEEECS-SSSCE
T ss_pred ccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCC---cceeeecCCccEEEEEECC-CCCcE
Confidence 6777788899999999999 99999999988 7899998 333 3344456777999999999 665 8
Q ss_pred EEEEEeCCCeEEEEECCCCCCCeeeeccccc---ceeEEEEecC-CCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeee
Q 035558 145 MATIIMDSAKVVVLDIRFPTLPVVELQRHQA---SVNAIAWAPH-SSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILA 220 (253)
Q Consensus 145 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~i~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 220 (253)
+++++.++. |++||+++.+ .+..+..|.. .|.+++|+|+ + .+|++++.||.|++||+++++... ..
T Consensus 176 l~~~~~d~~-v~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~-------~~ 245 (615)
T 1pgu_A 176 SMTVGDDGS-VVFYQGPPFK-FSASDRTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFLK-------YI 245 (615)
T ss_dssp EEEEETTTE-EEEEETTTBE-EEEEECSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEEE-------EC
T ss_pred EEEEeCCCc-EEEEeCCCcc-eeeeecccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEeE-------Ee
Confidence 999999988 9999998765 4778888998 9999999999 8 699999999999999998876433 33
Q ss_pred -c---cCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 221 -Y---TAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 221 -~---~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
. .|..+|.+++|+ +++.+++++.|+.+++|++
T Consensus 246 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~ 281 (615)
T 1pgu_A 246 EDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDV 281 (615)
T ss_dssp CBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEET
T ss_pred cccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEEC
Confidence 3 899999999999 9888999999999999985
No 91
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-33 Score=217.94 Aligned_cols=207 Identities=17% Similarity=0.253 Sum_probs=180.4
Q ss_pred ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCC
Q 035558 28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADG 106 (253)
Q Consensus 28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg 106 (253)
.....+.+|. .+|++++|+ +++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ ++++|++++.||
T Consensus 23 ~~~~~l~~h~-----~~v~~~~~s-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 96 (369)
T 3zwl_B 23 MKAIKLTGHE-----RPLTQVKYN-KEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADY 96 (369)
T ss_dssp EEEEEEECCS-----SCEEEEEEC-TTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTT
T ss_pred cccEEEEEee-----ceEEEEEEc-CCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCC
Confidence 4456688898 899999999 799999999999999999999999999999999999999999 999999999999
Q ss_pred cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC-----CCeEEEEECCCCCC----------Ceeeec
Q 035558 107 SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMD-----SAKVVVLDIRFPTL----------PVVELQ 171 (253)
Q Consensus 107 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~-----~~~i~~~d~~~~~~----------~~~~~~ 171 (253)
.|++||+++++....+. +...+.+++|+| ++.++++++.+ +. |++||++.... +...+.
T Consensus 97 ~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~-i~~~d~~~~~~~~~~~~~~~~~~~~~~ 170 (369)
T 3zwl_B 97 SIKLWDVSNGQCVATWK----SPVPVKRVEFSP-CGNYFLAILDNVMKNPGS-INIYEIERDSATHELTKVSEEPIHKII 170 (369)
T ss_dssp EEEEEETTTCCEEEEEE----CSSCEEEEEECT-TSSEEEEEECCBTTBCCE-EEEEEEEECTTTCCEEEECSSCSEEEE
T ss_pred eEEEEECCCCcEEEEee----cCCCeEEEEEcc-CCCEEEEecCCccCCCCE-EEEEEecCCccceeecccccceeeecc
Confidence 99999999887554443 455899999999 89999999888 77 99999987542 344555
Q ss_pred cccc--ceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEE
Q 035558 172 RHQA--SVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQ 249 (253)
Q Consensus 172 ~~~~--~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~ 249 (253)
.|.. .+.+++|+|++ .+|++++.||.|++||+++..... .....|...|.+++|+|+++.+++++.|+.|+
T Consensus 171 ~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 243 (369)
T 3zwl_B 171 THEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEYV------DSIDLHEKSISDMQFSPDLTYFITSSRDTNSF 243 (369)
T ss_dssp CCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEEE------EEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEeE------EEEecCCCceeEEEECCCCCEEEEecCCceEE
Confidence 5666 89999999999 699999999999999999844332 46667999999999999999999999999999
Q ss_pred EEEC
Q 035558 250 ILRV 253 (253)
Q Consensus 250 vw~l 253 (253)
+|++
T Consensus 244 v~d~ 247 (369)
T 3zwl_B 244 LVDV 247 (369)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9985
No 92
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-34 Score=230.67 Aligned_cols=239 Identities=12% Similarity=0.135 Sum_probs=179.9
Q ss_pred CCCCceEEeec-C-cEEEEEccCCc--cccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEecc---C
Q 035558 2 CQKPDLLATSS-D-FLRVWRISDED--RRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE---R 74 (253)
Q Consensus 2 p~~~~~l~~~~-~-~v~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~---~ 74 (253)
|.++.+|++++ | .|++||+.... ...+....+ +|. .+|++++|+ +++++|++|+.||.|++||++ .
T Consensus 73 ~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~-----~~v~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~~ 145 (437)
T 3gre_A 73 PGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCS-----STVTQITMI-PNFDAFAVSSKDGQIIVLKVNHYQQ 145 (437)
T ss_dssp CSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECS-----SCEEEEEEC-TTSSEEEEEETTSEEEEEEEEEEEE
T ss_pred CCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCC-----CCEEEEEEe-CCCCEEEEEeCCCEEEEEEeccccC
Confidence 44778888887 4 99999997620 111222233 466 899999999 799999999999999999995 4
Q ss_pred ceeeeeeec------------ccccEEEEE--ec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeC
Q 035558 75 EAVDTQLIA------------HDKEVYDIA--WG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNK 139 (253)
Q Consensus 75 ~~~~~~~~~------------~~~~v~~~~--~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~ 139 (253)
++....+.. +...+.++. ++ ++.+|++++.||.|++||+++.+....+.. ..|...|++++|+|
T Consensus 146 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~~s~ 224 (437)
T 3gre_A 146 ESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN-SPRHGAVSSICIDE 224 (437)
T ss_dssp TTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC-CGGGCCEEEEEECT
T ss_pred CceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc-CCCCCceEEEEECC
Confidence 444333322 445566666 34 688999999999999999999875444432 12556999999999
Q ss_pred CCCCEEEEEEeCCCeEEEEECCCCCCCeeeec-ccccceeEEEEec----CCCCeEEEecCCCcEEEEeccCCCCCCCCC
Q 035558 140 QDPRYMATIIMDSAKVVVLDIRFPTLPVVELQ-RHQASVNAIAWAP----HSSCHICTAGDDSQALIWDLSSMGQPVEGG 214 (253)
Q Consensus 140 ~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 214 (253)
++.+|++++.|+. |++||+++.. ++..+. .|...|.+++|+| ++ .+|++++.||.|++||+++++......
T Consensus 225 -~~~~l~s~~~dg~-i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~ 300 (437)
T 3gre_A 225 -ECCVLILGTTRGI-IDIWDIRFNV-LIRSWSFGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHCQYAFI 300 (437)
T ss_dssp -TSCEEEEEETTSC-EEEEETTTTE-EEEEEBCTTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTTTEEEEEEE
T ss_pred -CCCEEEEEcCCCe-EEEEEcCCcc-EEEEEecCCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCcEEEEEE
Confidence 8999999999999 9999999854 466665 6788999996665 55 599999999999999998765221000
Q ss_pred ----------CCC-------eeecc--CCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 215 ----------LDP-------ILAYT--AGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 215 ----------~~~-------~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
..+ ..+.+ |...|++++|+ +++.+++++.|+.|++|++
T Consensus 301 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~ 357 (437)
T 3gre_A 301 NSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSL 357 (437)
T ss_dssp SSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEET
T ss_pred cCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEEC
Confidence 000 01222 78889999999 6677889999999999985
No 93
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.5e-33 Score=222.49 Aligned_cols=225 Identities=16% Similarity=0.249 Sum_probs=185.4
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee-----------
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI----------- 82 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----------- 82 (253)
.+++|+++.. +....+.+|. ++|++++|+|.++++|++|+.||.|++||+.+++....+.
T Consensus 24 ~~~v~~~~~~----~~~~~~~~h~-----~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 94 (408)
T 4a11_B 24 TRRVLGLELN----KDRDVERIHG-----GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDH 94 (408)
T ss_dssp HHHHHTEEEC----TTEEECCCCS-----SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTC
T ss_pred cceeeccccC----cceeeeeccC-----CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccc
Confidence 6788888776 6778888898 8999999993299999999999999999999877555443
Q ss_pred --cccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC--CCCEEEEEEeCCCeEE
Q 035558 83 --AHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ--DPRYMATIIMDSAKVV 156 (253)
Q Consensus 83 --~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~~~~~i~ 156 (253)
+|...|.+++|+ ++.+|++++.||.|++||+++++...... +...+.++.|+|. ++.++++++.++. |+
T Consensus 95 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~ 169 (408)
T 4a11_B 95 PDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN----FEETVYSHHMSPVSTKHCLVAVGTRGPK-VQ 169 (408)
T ss_dssp TTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECSSCSSCCEEEEEESSSS-EE
T ss_pred cccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc----CCCceeeeEeecCCCCCcEEEEEcCCCe-EE
Confidence 589999999999 66799999999999999999887444432 3447899999884 3348999999998 99
Q ss_pred EEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCC---------CCCCeeeccCCCce
Q 035558 157 VLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEG---------GLDPILAYTAGAEI 227 (253)
Q Consensus 157 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------~~~~~~~~~~~~~v 227 (253)
+||+++.. .+..+..|...|.+++|+|++..+|++++.||.|++||++........ .........|...|
T Consensus 170 ~~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 248 (408)
T 4a11_B 170 LCDLKSGS-CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV 248 (408)
T ss_dssp EEESSSSC-CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCE
T ss_pred EEeCCCcc-eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCce
Confidence 99999865 478888999999999999999546899999999999999876532200 00111235789999
Q ss_pred eEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 228 EQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
.+++|+|+++++++++.|+.+++|++
T Consensus 249 ~~~~~~~~~~~l~~~~~dg~i~vwd~ 274 (408)
T 4a11_B 249 NGLCFTSDGLHLLTVGTDNRMRLWNS 274 (408)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eEEEEcCCCCEEEEecCCCeEEEEEC
Confidence 99999999999999999999999985
No 94
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.8e-32 Score=229.27 Aligned_cols=231 Identities=13% Similarity=0.186 Sum_probs=194.5
Q ss_pred CCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccC---CeeEEEecCCC-CCEEEEEeCCCeEEEEeccCc
Q 035558 2 CQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCG---PLTSFDWNEAE-PRRIGTSSIDTTCTIWDIERE 75 (253)
Q Consensus 2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~ 75 (253)
|.+..++++++ + .|++||+... +....+.+|. . .|.+++|+ ++ +++|++++.||.|++||++++
T Consensus 170 ~~~~~~l~~~~~d~~v~vwd~~~~----~~~~~~~~~~-----~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~vwd~~~~ 239 (615)
T 1pgu_A 170 QSRPMRSMTVGDDGSVVFYQGPPF----KFSASDRTHH-----KQGSFVRDVEFS-PDSGEFVITVGSDRKISCFDGKSG 239 (615)
T ss_dssp SSSSCEEEEEETTTEEEEEETTTB----EEEEEECSSS-----CTTCCEEEEEEC-STTCCEEEEEETTCCEEEEETTTC
T ss_pred CCCCcEEEEEeCCCcEEEEeCCCc----ceeeeecccC-----CCCceEEEEEEC-CCCCCEEEEEeCCCeEEEEECCCC
Confidence 44444677776 5 9999999887 7888899898 7 89999999 77 999999999999999999999
Q ss_pred eeeeee-e---cccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeee-----------------------------
Q 035558 76 AVDTQL-I---AHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTII----------------------------- 122 (253)
Q Consensus 76 ~~~~~~-~---~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------------------------- 122 (253)
+.+..+ . .|...|.+++|+++++|++++.|+.|++||+++++....+
T Consensus 240 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 319 (615)
T 1pgu_A 240 EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 319 (615)
T ss_dssp CEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTS
T ss_pred CEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCC
Confidence 988888 5 8999999999987778999999999999998753211000
Q ss_pred --------------------------------------------------------------------------------
Q 035558 123 -------------------------------------------------------------------------------- 122 (253)
Q Consensus 123 -------------------------------------------------------------------------------- 122 (253)
T Consensus 320 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~ 399 (615)
T 1pgu_A 320 TLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNG 399 (615)
T ss_dssp CEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETT
T ss_pred CEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEE
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 035558 123 -------------------------------------------------------------------------------- 122 (253)
Q Consensus 123 -------------------------------------------------------------------------------- 122 (253)
T Consensus 400 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~ 479 (615)
T 1pgu_A 400 ITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV 479 (615)
T ss_dssp EEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEE
T ss_pred cccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccc
Confidence
Q ss_pred --eccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc-cccceeEEEEec----------CCCCe
Q 035558 123 --YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR-HQASVNAIAWAP----------HSSCH 189 (253)
Q Consensus 123 --~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~i~~~~~~~----------~~~~~ 189 (253)
.....+...|.+++|+| ++++|++++.|+. |++||+.+.+. +..+.+ |...|++++|+| ++ .+
T Consensus 480 ~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~-i~iw~~~~~~~-~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~-~~ 555 (615)
T 1pgu_A 480 SFDLKTPLRAKPSYISISP-SETYIAAGDVMGK-ILLYDLQSREV-KTSRWAFRTSKINAISWKPAEKGANEEEIEE-DL 555 (615)
T ss_dssp EEECSSCCSSCEEEEEECT-TSSEEEEEETTSC-EEEEETTTTEE-EECCSCCCSSCEEEEEECCCC------CCSC-CE
T ss_pred cccccCCccCceEEEEECC-CCCEEEEcCCCCe-EEEeeCCCCcc-eeEeecCCCCceeEEEEcCccccccccccCC-CE
Confidence 11123455788899999 8999999999998 99999988653 667777 999999999999 88 69
Q ss_pred EEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 190 ICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 190 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
|++++.||.|++||+.+..... ..+.+|...|++++|+|+++ +++++.|+.|++|++
T Consensus 556 l~~~~~dg~i~iw~~~~~~~~~------~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 556 VATGSLDTNIFIYSVKRPMKII------KALNAHKDGVNNLLWETPST-LVSSGADACIKRWNV 612 (615)
T ss_dssp EEEEETTSCEEEEESSCTTCCE------EETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred EEEEcCCCcEEEEECCCCceec------hhhhcCccceEEEEEcCCCC-eEEecCCceEEEEee
Confidence 9999999999999999874333 45678999999999999999 999999999999985
No 95
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.7e-33 Score=225.39 Aligned_cols=209 Identities=18% Similarity=0.327 Sum_probs=176.8
Q ss_pred ecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC----------ceeeeeeecccccEEEEEec-CCC-eEE
Q 035558 33 LNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER----------EAVDTQLIAHDKEVYDIAWG-GVG-VFA 100 (253)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~----------~~~~~~~~~~~~~v~~~~~~-~~~-~l~ 100 (253)
...|. +.|++++|+|.++.+|++++.||.|++||+.. .+....+.+|...|.+++|+ ++. +|+
T Consensus 124 ~~~h~-----~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 198 (430)
T 2xyi_A 124 KINHE-----GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL 198 (430)
T ss_dssp EEEES-----SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEE
T ss_pred EEcCC-----CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEE
Confidence 44566 89999999943478999999999999999987 56777888999999999999 666 999
Q ss_pred EEeCCCcEEEEEcCCCCCe----eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC--CCeeeecccc
Q 035558 101 SVSADGSVRVFDLRDKEHS----TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT--LPVVELQRHQ 174 (253)
Q Consensus 101 ~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~ 174 (253)
+|+.||.|++||++..... ........|...|.+++|+|.++.+|++++.++. |++||+++.. .++..+..|.
T Consensus 199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~-i~i~d~~~~~~~~~~~~~~~~~ 277 (430)
T 2xyi_A 199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK-LMIWDTRNNNTSKPSHTVDAHT 277 (430)
T ss_dssp EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCSCSSSCSEEEECCS
T ss_pred EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCe-EEEEECCCCCCCcceeEeecCC
Confidence 9999999999999985321 1123334677799999999977889999999998 9999999863 4577788899
Q ss_pred cceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCc-eEEEEcCCcEEEEEC
Q 035558 175 ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPD-WVAIAFSTKLQILRV 253 (253)
Q Consensus 175 ~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~i~vw~l 253 (253)
..|++++|+|++..+|++|+.||.|++||++....+. ..+..|...|.+++|+|+++. +++++.|+.|++|++
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~------~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~ 351 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL------HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS------EEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCe------EEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence 9999999999986579999999999999999866544 466789999999999999975 668889999999985
No 96
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=5.2e-33 Score=211.76 Aligned_cols=232 Identities=8% Similarity=0.051 Sum_probs=167.8
Q ss_pred eEEeecC-cEEEEEccCCccccceeeeecCCCCcccc--------------------CCeeEEEecCCC----CCEEEEE
Q 035558 7 LLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYC--------------------GPLTSFDWNEAE----PRRIGTS 61 (253)
Q Consensus 7 ~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~v~~~~~~~~~----~~~l~~~ 61 (253)
.++++++ .|++|+.... .+.+.+.++..|+..... ..|.+++|+ |+ +..++++
T Consensus 56 ~~~~~~~~~v~lw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s-pd~~~~~~~l~s~ 133 (356)
T 2w18_A 56 CIITACEDVVSLWKALDA-WQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS-SDDESEKQVLLKS 133 (356)
T ss_dssp EEEEEESSEEEEEEESSS-SBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-------CCEEEEEE
T ss_pred EEEEeccceEEEcccCCC-ccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC-CCccccccEEEeC
Confidence 4667777 9999999886 666788888888732111 145666777 66 6677765
Q ss_pred eC--------------------CCeEEEEec-cCceeeeeeecccccEEEEEec----CCCeEEEEeCCCcEEEEEcCCC
Q 035558 62 SI--------------------DTTCTIWDI-EREAVDTQLIAHDKEVYDIAWG----GVGVFASVSADGSVRVFDLRDK 116 (253)
Q Consensus 62 ~~--------------------dg~i~vwd~-~~~~~~~~~~~~~~~v~~~~~~----~~~~l~~~~~dg~i~i~d~~~~ 116 (253)
+. |+.|++|++ .+++.+..+.+|...+..++|+ ++..|++++.|++|++||++++
T Consensus 134 g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG 213 (356)
T 2w18_A 134 GNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG 213 (356)
T ss_dssp EEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC
T ss_pred CCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC
Confidence 53 888888888 4477777777888777777777 4589999999999999999999
Q ss_pred CCeeeeeccCCCCCCeeEEEeeCCCCCEE------------EEEEeCCCeEEEEECCCCCCCeeee-----cccccceeE
Q 035558 117 EHSTIIYESSEPDTPLVRLGWNKQDPRYM------------ATIIMDSAKVVVLDIRFPTLPVVEL-----QRHQASVNA 179 (253)
Q Consensus 117 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l------------~~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~~~i~~ 179 (253)
+....+.....+...+.+++|+| ++.++ ++|+.|+. |++||..++.. +..+ .+|...+.+
T Consensus 214 k~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~t-IklWd~~tgk~-l~v~~~~~p~Gh~~~~ls 290 (356)
T 2w18_A 214 QLLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQ-LIVINPKTTLS-VGVMLYCLPPGQAGRFLE 290 (356)
T ss_dssp CEEEEEECCC---CCCEEEEEEE-TTEEEEEEC------------CCEE-EEEEETTTTEE-EEEEEECCCTTCCCCEEE
T ss_pred cEEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcE-EEEEECCCCEE-EEEEEeeccCCCcceeEc
Confidence 87666653333334788889999 88776 45666676 99999987653 3333 356555544
Q ss_pred EEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCcee-EEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 180 IAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIE-QLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 180 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
..++ + .++++++.|++|+|||+.+++... .+.+|...+. .++|+|+++++++++.|+.|+||++
T Consensus 291 g~~s--g-~~lASgS~DgTIkIWDl~tGk~l~-------tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 291 GDVK--D-HCAAAILTSGTIAIWDLLLGQCTA-------LLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEE--T-TEEEEEETTSCEEEEETTTCSEEE-------EECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred cccC--C-CEEEEEcCCCcEEEEECCCCcEEE-------EecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 4444 5 589999999999999999987543 5667877655 5899999999999999999999984
No 97
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=5.5e-33 Score=223.92 Aligned_cols=224 Identities=19% Similarity=0.283 Sum_probs=187.4
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee---
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD--- 78 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--- 78 (253)
++.+|++|+ + .|++||+.++ +....+.+|. ..|.+++|+ ++.+++|+.||.|++||+++++..
T Consensus 182 ~~~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~-----~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~ 249 (435)
T 1p22_A 182 DERVIITGSSDSTVRVWDVNTG----EMLNTLIHHC-----EAVLHLRFN---NGMMVTCSKDRSIAVWDMASPTDITLR 249 (435)
T ss_dssp CSSEEEEEETTSCEEEEESSSC----CEEEEECCCC-----SCEEEEECC---TTEEEEEETTSCEEEEECSSSSCCEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCC----cEEEEEcCCC-----CcEEEEEEc---CCEEEEeeCCCcEEEEeCCCCCCceee
Confidence 567788877 5 9999999987 7888899998 899999997 459999999999999999887655
Q ss_pred eeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558 79 TQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL 158 (253)
Q Consensus 79 ~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~ 158 (253)
..+.+|...|.+++| +++++++++.||.|++||+++++....+ ..+...+.+++|+ ++++++++.|+. |++|
T Consensus 250 ~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~---~~~l~~g~~dg~-i~iw 321 (435)
T 1p22_A 250 RVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEFVRTL---NGHKRGIACLQYR---DRLVVSGSSDNT-IRLW 321 (435)
T ss_dssp EEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTTCCEEEEE---ECCSSCEEEEEEE---TTEEEEEETTSC-EEEE
T ss_pred eEecCCCCcEEEEEe-CCCEEEEEeCCCeEEEEECCcCcEEEEE---cCCCCcEEEEEeC---CCEEEEEeCCCe-EEEE
Confidence 567789999999999 6889999999999999999998744433 4566789999994 579999999999 9999
Q ss_pred ECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCC--CCCeeeccCCCceeEEEEcCCC
Q 035558 159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGG--LDPILAYTAGAEIEQLQWSSSQ 236 (253)
Q Consensus 159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~ 236 (253)
|++++. ++..+.+|...|.+++| ++ .+|++|+.||.|++||++....+.... .......+|..+|.+++| ++
T Consensus 322 d~~~~~-~~~~~~~h~~~v~~~~~--~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~ 395 (435)
T 1p22_A 322 DIECGA-CLRVLEGHEELVRCIRF--DN-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DE 395 (435)
T ss_dssp ETTTCC-EEEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CS
T ss_pred ECCCCC-EEEEEeCCcCcEEEEEe--cC-CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CC
Confidence 999865 48889999999999999 45 599999999999999998765322110 012456789999999999 56
Q ss_pred CceEEEEcCCcEEEEEC
Q 035558 237 PDWVAIAFSTKLQILRV 253 (253)
Q Consensus 237 ~~~~~~~~~~~i~vw~l 253 (253)
..+++++.|+.|++|++
T Consensus 396 ~~l~s~s~Dg~i~iwd~ 412 (435)
T 1p22_A 396 FQIVSSSHDDTILIWDF 412 (435)
T ss_dssp SCEEECCSSSEEEEEC-
T ss_pred CEEEEEeCCCEEEEEEC
Confidence 67899999999999985
No 98
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=221.61 Aligned_cols=208 Identities=16% Similarity=0.235 Sum_probs=157.7
Q ss_pred ecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC-ceeee-------eeecccccEEEEEec-CC-CeEEEE
Q 035558 33 LNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER-EAVDT-------QLIAHDKEVYDIAWG-GV-GVFASV 102 (253)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~-------~~~~~~~~v~~~~~~-~~-~~l~~~ 102 (253)
..+|. ..|.+++|+ +++++|++| .|+.|++||++. ++... .+.+|...|.+++|+ ++ ++|+++
T Consensus 173 ~~~h~-----~~v~~~~~~-~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 245 (447)
T 3dw8_B 173 ANAHT-----YHINSISIN-SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS 245 (447)
T ss_dssp CSCCS-----SCCCEEEEC-TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEE
T ss_pred ccCCC-----cceEEEEEc-CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEE
Confidence 35677 899999999 789999998 799999999984 44443 356899999999999 77 899999
Q ss_pred eCCCcEEEEEcCCCCCee-eeeccCCCCC------------CeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeee
Q 035558 103 SADGSVRVFDLRDKEHST-IIYESSEPDT------------PLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE 169 (253)
Q Consensus 103 ~~dg~i~i~d~~~~~~~~-~~~~~~~~~~------------~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~ 169 (253)
+.||.|++||+++++... .......+.. .|.+++|+| ++.+|++++. +. |++||+++...++..
T Consensus 246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~-v~iwd~~~~~~~~~~ 322 (447)
T 3dw8_B 246 SSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LS-VKVWDLNMENRPVET 322 (447)
T ss_dssp ETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SE-EEEEETTCCSSCSCC
T ss_pred eCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-Ce-EEEEeCCCCccccce
Confidence 999999999999887411 1122223332 899999999 9999999888 76 999999975556788
Q ss_pred ecccccc---------------eeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCC-C---------C--------
Q 035558 170 LQRHQAS---------------VNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGG-L---------D-------- 216 (253)
Q Consensus 170 ~~~~~~~---------------i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~---------~-------- 216 (253)
+..|... +..++|+|++ .+|++|+.||.|++||+.+++...... . .
T Consensus 323 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (447)
T 3dw8_B 323 YQVHEYLRSKLCSLYENDCIFDKFECCWNGSD-SVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASG 401 (447)
T ss_dssp EESCGGGTTTHHHHHHTSGGGCCCCEEECTTS-SEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSS
T ss_pred eeccccccccccccccccccccceEEEECCCC-CEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccC
Confidence 8877642 2349999999 699999999999999998865321000 0 0
Q ss_pred -------CeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 217 -------PILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 217 -------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
......+...|..++|+|++. +++++..+.+.+|.
T Consensus 402 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~-~la~~~~~~~~~~~ 443 (447)
T 3dw8_B 402 KRKKDEISVDSLDFNKKILHTAWHPKEN-IIAVATTNNLYIFQ 443 (447)
T ss_dssp CCCTTCEEGGGCCTTSCCCEEEECSSSS-EEEEECSSCEEEEE
T ss_pred CcccccccccccccCCceeEEEECCCCC-EEEEEecceeeeec
Confidence 000124467899999999997 55555566688875
No 99
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.5e-32 Score=220.79 Aligned_cols=219 Identities=20% Similarity=0.273 Sum_probs=184.9
Q ss_pred eEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecC-CCCCEEEEEeCCCeEEEEeccCcee------
Q 035558 7 LLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNE-AEPRRIGTSSIDTTCTIWDIEREAV------ 77 (253)
Q Consensus 7 ~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~------ 77 (253)
+|++++ | .|++||+.++ +....+.+|. ..|.+++|+| +++.++++|+.||.|++||+.+++.
T Consensus 175 ~l~s~s~dg~i~vwd~~~~----~~~~~~~~h~-----~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 245 (464)
T 3v7d_B 175 ILVSGSTDRTVRVWDIKKG----CCTHVFEGHN-----STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGE 245 (464)
T ss_dssp EEEEEETTSCEEEEETTTT----EEEEEECCCS-----SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-----
T ss_pred EEEEEeCCCCEEEEECCCC----cEEEEECCCC-----CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccc
Confidence 666666 5 9999999987 7888899998 8999999985 4678999999999999999987652
Q ss_pred -----------------eeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC
Q 035558 78 -----------------DTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ 140 (253)
Q Consensus 78 -----------------~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 140 (253)
...+.+|...|.++.. +++++++++.||.|++||+++.+.. .....+...|.+++|+|
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~- 320 (464)
T 3v7d_B 246 EHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG-HGNIVVSGSYDNTLIVWDVAQMKCL---YILSGHTDRIYSTIYDH- 320 (464)
T ss_dssp -CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE-ETTEEEEEETTSCEEEEETTTTEEE---EEECCCSSCEEEEEEET-
T ss_pred cCCcceEeeccCCCeEEEEEccCccceEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEE---EEecCCCCCEEEEEEcC-
Confidence 4456688888888744 6889999999999999999987643 33456777999999999
Q ss_pred CCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeee
Q 035558 141 DPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILA 220 (253)
Q Consensus 141 ~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 220 (253)
+++++++++.|+. |++||+++++ ++..+.+|...|.+++|++ .+|++++.||.|++||+++.... ..
T Consensus 321 ~~~~l~sg~~dg~-i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~~~--------~~ 387 (464)
T 3v7d_B 321 ERKRCISASMDTT-IRIWDLENGE-LMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRK--------FS 387 (464)
T ss_dssp TTTEEEEEETTSC-EEEEETTTTE-EEEEECCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEE--------EE
T ss_pred CCCEEEEEeCCCc-EEEEECCCCc-EEEEEeCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCcee--------ee
Confidence 9999999999999 9999999865 4888999999999999983 58999999999999999986532 33
Q ss_pred ccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 221 YTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 221 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
..+...+..++|+|+++.+++++ |+.+++|++
T Consensus 388 ~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~ 419 (464)
T 3v7d_B 388 YHHTNLSAITTFYVSDNILVSGS-ENQFNIYNL 419 (464)
T ss_dssp EECTTCCCEEEEEECSSEEEEEE-TTEEEEEET
T ss_pred ecCCCCccEEEEEeCCCEEEEec-CCeEEEEEC
Confidence 45777888999999998665655 999999985
No 100
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.1e-31 Score=216.81 Aligned_cols=217 Identities=19% Similarity=0.220 Sum_probs=188.9
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
++++|++++ + .|++||+.++ +....+.+|. ..|.+++|+ ++++++|+.||.|++||+++++.+..+
T Consensus 128 ~g~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~-----~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~ 195 (445)
T 2ovr_B 128 CGNRIVSGSDDNTLKVWSAVTG----KCLRTLVGHT-----GGVWSSQMR---DNIIISGSTDRTLKVWNAETGECIHTL 195 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTC----CEEEECCCCS-----SCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred cCCEEEEEECCCcEEEEECCCC----cEEEEEcCCC-----CCEEEEEec---CCEEEEEeCCCeEEEEECCcCcEEEEE
Confidence 466788877 4 9999999987 8888999999 899999997 579999999999999999999999999
Q ss_pred ecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558 82 IAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR 161 (253)
Q Consensus 82 ~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~ 161 (253)
.+|...|.++.|+ ++.+++++.||.|++||+++++....+ ..+...+.+++| ++.++++++.|+. |++||++
T Consensus 196 ~~h~~~v~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~---~~~~l~~~~~dg~-i~iwd~~ 267 (445)
T 2ovr_B 196 YGHTSTVRCMHLH-EKRVVSGSRDATLRVWDIETGQCLHVL---MGHVAAVRCVQY---DGRRVVSGAYDFM-VKVWDPE 267 (445)
T ss_dssp CCCSSCEEEEEEE-TTEEEEEETTSEEEEEESSSCCEEEEE---ECCSSCEEEEEE---CSSCEEEEETTSC-EEEEEGG
T ss_pred CCCCCcEEEEEec-CCEEEEEeCCCEEEEEECCCCcEEEEE---cCCcccEEEEEE---CCCEEEEEcCCCE-EEEEECC
Confidence 9999999999995 778999999999999999988744333 456678999998 5788999999998 9999998
Q ss_pred CCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558 162 FPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA 241 (253)
Q Consensus 162 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 241 (253)
+.. ++..+.+|...|.+++| ++ .++++++.||.|++||+++++... ...+|...+.++.+++ ..+++
T Consensus 268 ~~~-~~~~~~~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~~~-------~~~~~~~~v~~~~~~~--~~l~~ 334 (445)
T 2ovr_B 268 TET-CLHTLQGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNCIH-------TLTGHQSLTSGMELKD--NILVS 334 (445)
T ss_dssp GTE-EEEEECCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCEEE-------EECCCCSCEEEEEEET--TEEEE
T ss_pred CCc-EeEEecCCCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCEEE-------EEcCCcccEEEEEEeC--CEEEE
Confidence 865 47888899999999999 55 699999999999999999876443 6678889999988854 47889
Q ss_pred EEcCCcEEEEEC
Q 035558 242 IAFSTKLQILRV 253 (253)
Q Consensus 242 ~~~~~~i~vw~l 253 (253)
++.|+.|++|++
T Consensus 335 ~~~dg~i~vwd~ 346 (445)
T 2ovr_B 335 GNADSTVKIWDI 346 (445)
T ss_dssp EETTSCEEEEET
T ss_pred EeCCCeEEEEEC
Confidence 999999999985
No 101
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-33 Score=223.21 Aligned_cols=241 Identities=12% Similarity=0.044 Sum_probs=176.8
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCc-------cccCCeeEEE--ecCCCCCEEEEEeCCCeEEEEec
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNS-------EYCGPLTSFD--WNEAEPRRIGTSSIDTTCTIWDI 72 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~--~~~~~~~~l~~~~~dg~i~vwd~ 72 (253)
++.+|++++ | .|++||+... ...+....+.+|.-. .....+.++. ++ +++.+|++|+.||.|++||+
T Consensus 122 ~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~iwd~ 199 (437)
T 3gre_A 122 NFDAFAVSSKDGQIIVLKVNHY-QQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVN-EEKSLLVALTNLSRVIIFDI 199 (437)
T ss_dssp TSSEEEEEETTSEEEEEEEEEE-EETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEEC-SSCEEEEEEETTSEEEEEET
T ss_pred CCCEEEEEeCCCEEEEEEeccc-cCCceeeccccceeEEEEccCcccccCceEEEEEEc-CCCCEEEEEeCCCeEEEEeC
Confidence 566777776 5 9999999521 001333322222100 0115666776 45 67899999999999999999
Q ss_pred cCceeeeeeec--ccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC---CCCEEE
Q 035558 73 EREAVDTQLIA--HDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ---DPRYMA 146 (253)
Q Consensus 73 ~~~~~~~~~~~--~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~ 146 (253)
++++.+..+.. |...|++++|+ ++++|++|+.||.|++||+++++....+. ..+...|.+++|+|. ++.+++
T Consensus 200 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~s~~~~~l~ 277 (437)
T 3gre_A 200 RTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS--FGDHAPITHVEVCQFYGKNSVIVV 277 (437)
T ss_dssp TTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEB--CTTCEEEEEEEECTTTCTTEEEEE
T ss_pred CCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEe--cCCCCceEEEEeccccCCCccEEE
Confidence 99999999987 89999999999 99999999999999999999876433322 144458999966652 677999
Q ss_pred EEEeCCCeEEEEECCCCCCCeeeec------------------------c--cccceeEEEEecCCCCeEEEecCCCcEE
Q 035558 147 TIIMDSAKVVVLDIRFPTLPVVELQ------------------------R--HQASVNAIAWAPHSSCHICTAGDDSQAL 200 (253)
Q Consensus 147 ~~~~~~~~i~~~d~~~~~~~~~~~~------------------------~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 200 (253)
+++.|+. |++||+++... +..+. + |...|++++|+ ++ .+|++|+.||.|+
T Consensus 278 s~~~dg~-i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~d~~i~ 353 (437)
T 3gre_A 278 GGSSKTF-LTIWNFVKGHC-QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDEATSSIV 353 (437)
T ss_dssp EESTTEE-EEEEETTTTEE-EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGGGTEEE
T ss_pred EEcCCCc-EEEEEcCCCcE-EEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEEEecCCCCeEE
Confidence 9999998 99999987552 33332 2 66779999999 66 6999999999999
Q ss_pred EEeccCCCCCCCCCC------------------------------CCeeeccCCCceeEEEEcCC--CCceEEEEcCCcE
Q 035558 201 IWDLSSMGQPVEGGL------------------------------DPILAYTAGAEIEQLQWSSS--QPDWVAIAFSTKL 248 (253)
Q Consensus 201 iwd~~~~~~~~~~~~------------------------------~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~i 248 (253)
+||+.+++....... .......|...|++++|+++ +..+++++.||.|
T Consensus 354 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I 433 (437)
T 3gre_A 354 MFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLI 433 (437)
T ss_dssp EEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCE
T ss_pred EEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceE
Confidence 999988764320000 00011238999999999998 6678899999999
Q ss_pred EEEE
Q 035558 249 QILR 252 (253)
Q Consensus 249 ~vw~ 252 (253)
+||+
T Consensus 434 ~iw~ 437 (437)
T 3gre_A 434 GIFQ 437 (437)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9995
No 102
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=7.6e-32 Score=210.06 Aligned_cols=209 Identities=14% Similarity=0.227 Sum_probs=173.8
Q ss_pred eeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc----eeeeeeecccccEEEEEec-C--CCeEEEE
Q 035558 30 KSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE----AVDTQLIAHDKEVYDIAWG-G--VGVFASV 102 (253)
Q Consensus 30 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~-~--~~~l~~~ 102 (253)
...+.+|. ..|++++|+ +++++|++|+.||.|++||+.++ +....+.+|...|.+++|+ . +++|+++
T Consensus 4 ~~~~~gH~-----~~v~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~ 77 (351)
T 3f3f_A 4 QPFDSGHD-----DLVHDVVYD-FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASA 77 (351)
T ss_dssp CCEECCCS-----SCEEEEEEC-SSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEE
T ss_pred cccCcccc-----cceeEEEEc-CCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEE
Confidence 45677898 899999999 79999999999999999999876 4666778999999999999 3 8899999
Q ss_pred eCCCcEEEEEcCCCCCe------eeeeccCCCCCCeeEEEeeCCC--CCEEEEEEeCCCeEEEEECCCCCCCeeee----
Q 035558 103 SADGSVRVFDLRDKEHS------TIIYESSEPDTPLVRLGWNKQD--PRYMATIIMDSAKVVVLDIRFPTLPVVEL---- 170 (253)
Q Consensus 103 ~~dg~i~i~d~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~~~~~i~~~d~~~~~~~~~~~---- 170 (253)
+.||.|++||+++++.. ..+.....+...|.+++|+| + +.++++++.|+. |++||+++... +..+
T Consensus 78 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~-v~iwd~~~~~~-~~~~~~~~ 154 (351)
T 3f3f_A 78 SYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-AHLGLKLACLGNDGI-LRLYDALEPSD-LRSWTLTS 154 (351)
T ss_dssp ETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTCE-EEEEECSSTTC-TTCCEEEE
T ss_pred cCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcC-CCCCcEEEEecCCCc-EEEecCCChHH-hccccccc
Confidence 99999999999886421 23444456777999999999 7 899999999998 99999987653 2222
Q ss_pred ---------cccccceeEEEEecC---CCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC--
Q 035558 171 ---------QRHQASVNAIAWAPH---SSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ-- 236 (253)
Q Consensus 171 ---------~~~~~~i~~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-- 236 (253)
..|...+.+++|+|+ + .+|++++.|+.+.+|+........ .....+|...|++++|+|++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~h~~~i~~~~~~p~~~~ 228 (351)
T 3f3f_A 155 EMKVLSIPPANHLQSDFCLSWCPSRFSP-EKLAVSALEQAIIYQRGKDGKLHV-----AAKLPGHKSLIRSISWAPSIGR 228 (351)
T ss_dssp EEESCSCCCSSCSCCCEEEEECCCSSSC-CEEEEEETTEEEEEEECTTSCEEE-----EEECCCCCSCEEEEEECCCSSC
T ss_pred cccccccccCCcccceeEEEeccCCCCC-cEEEEecCCCcEEEEccCCCceee-----eeecCCCCcceeEEEECCCCCC
Confidence 257788999999997 6 699999999999888776654211 13556799999999999998
Q ss_pred --CceEEEEcCCcEEEEEC
Q 035558 237 --PDWVAIAFSTKLQILRV 253 (253)
Q Consensus 237 --~~~~~~~~~~~i~vw~l 253 (253)
..+++++.|+.|++|++
T Consensus 229 ~~~~l~s~~~dg~i~iwd~ 247 (351)
T 3f3f_A 229 WYQLIATGCKDGRIRIFKI 247 (351)
T ss_dssp SSEEEEEEETTSCEEEEEE
T ss_pred cceEEEEEcCCCeEEEEeC
Confidence 67889999999999985
No 103
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.1e-32 Score=241.38 Aligned_cols=238 Identities=15% Similarity=0.274 Sum_probs=197.2
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCC-CCCEEEEEeCCCeEEEEeccCceeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEA-EPRRIGTSSIDTTCTIWDIEREAVDT 79 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~ 79 (253)
+++.+|++++ + .|++||+.++ +....+.+|. ..|.+++|+|. +..++++|+.||.|++||+++++...
T Consensus 667 ~~~~~l~s~~~d~~v~vwd~~~~----~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~ 737 (1249)
T 3sfz_A 667 SDDSYIATCSADKKVKIWDSATG----KLVHTYDEHS-----EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN 737 (1249)
T ss_dssp TTSSEEEEEETTSEEEEEETTTC----CEEEEEECCS-----SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE
T ss_pred cCCCEEEEEeCCCeEEEEECCCC----ceEEEEcCCC-----CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh
Confidence 3566777776 5 9999999987 8888999998 89999999942 56689999999999999999999999
Q ss_pred eeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeee-----------------------------------
Q 035558 80 QLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIY----------------------------------- 123 (253)
Q Consensus 80 ~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------------------------------- 123 (253)
.+.+|...|.+++|+ +++++++++.||.|++||+++++....+.
T Consensus 738 ~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 817 (1249)
T 3sfz_A 738 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA 817 (1249)
T ss_dssp EECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE
T ss_pred eecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc
Confidence 999999999999999 99999999999999999998764322111
Q ss_pred -----------------ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCC
Q 035558 124 -----------------ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHS 186 (253)
Q Consensus 124 -----------------~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 186 (253)
....+...+.+++|+| ++.++++++.++. |++||+.+.. .+..+.+|...|.+++|+|++
T Consensus 818 ~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~-v~vwd~~~~~-~~~~~~~h~~~v~~v~~spdg 894 (1249)
T 3sfz_A 818 KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYC-VELWNIDSRL-KVADCRGHLSWVHGVMFSPDG 894 (1249)
T ss_dssp TTEEEEEETTTCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSC-EEEEETTTTE-EEEEECCCSSCEEEEEECTTS
T ss_pred CCcEEEEEecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCe-EEEEEcCCCc-eeeecCCCccceEEEEECCCC
Confidence 0114556889999999 8999999999998 9999999865 478889999999999999999
Q ss_pred CCeEEEecCCCcEEEEeccCCCCCC-------------------------------------------------------
Q 035558 187 SCHICTAGDDSQALIWDLSSMGQPV------------------------------------------------------- 211 (253)
Q Consensus 187 ~~~l~~~~~dg~i~iwd~~~~~~~~------------------------------------------------------- 211 (253)
.+|++++.||.|++|++.......
T Consensus 895 -~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g 973 (1249)
T 3sfz_A 895 -SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHL 973 (1249)
T ss_dssp -SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTS
T ss_pred -CEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCC
Confidence 699999999999999975310000
Q ss_pred -----------------CCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 212 -----------------EGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 212 -----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
..........+|...|.+++|+|+++.+++++.|+.+++|++
T Consensus 974 ~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~ 1032 (1249)
T 3sfz_A 974 EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW 1032 (1249)
T ss_dssp SEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEET
T ss_pred CEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 000112234568899999999999999999999999999985
No 104
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.8e-32 Score=233.78 Aligned_cols=208 Identities=13% Similarity=0.162 Sum_probs=184.0
Q ss_pred ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCC
Q 035558 28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADG 106 (253)
Q Consensus 28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg 106 (253)
+....+.+|. ..|++++|+ |++++|++|+.||.|++||+.+++.+..+.+|..+|.+++|+ ++++|++++.||
T Consensus 4 ~~~~~~~~h~-----~~v~~i~~s-p~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 77 (814)
T 3mkq_A 4 DIKKTFSNRS-----DRVKGIDFH-PTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF 77 (814)
T ss_dssp CCEEEEEEEC-----SCEEEEEEC-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTS
T ss_pred ccceeeecCC-----CceEEEEEC-CCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCC
Confidence 5677888998 899999999 899999999999999999999999999999999999999999 999999999999
Q ss_pred cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEec-C
Q 035558 107 SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAP-H 185 (253)
Q Consensus 107 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~ 185 (253)
.|++||+.+++....+ ..|...|.+++|+| ++.++++++.|+. |++||+++.......+..|...|.+++|+| +
T Consensus 78 ~i~vw~~~~~~~~~~~---~~~~~~v~~~~~s~-~~~~l~~~~~dg~-i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 152 (814)
T 3mkq_A 78 RIRVFNYNTGEKVVDF---EAHPDYIRSIAVHP-TKPYVLSGSDDLT-VKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152 (814)
T ss_dssp EEEEEETTTCCEEEEE---ECCSSCEEEEEECS-SSSEEEEEETTSE-EEEEEGGGTSEEEEEEECCSSCEEEEEEETTE
T ss_pred eEEEEECCCCcEEEEE---ecCCCCEEEEEEeC-CCCEEEEEcCCCE-EEEEECCCCceEEEEEcCCCCcEEEEEEEcCC
Confidence 9999999988744333 45667999999999 8999999999998 999999887555778888999999999999 6
Q ss_pred CCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcC--CCCceEEEEcCCcEEEEEC
Q 035558 186 SSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS--SQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 186 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~i~vw~l 253 (253)
+ .+|++++.||.|++||+....... .....+...+..++|+| +++.+++++.|+.+++|++
T Consensus 153 ~-~~l~~~~~dg~v~vwd~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~ 215 (814)
T 3mkq_A 153 P-STFASGCLDRTVKVWSLGQSTPNF------TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY 215 (814)
T ss_dssp E-EEEEEEETTSEEEEEETTCSSCSE------EEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEET
T ss_pred C-CEEEEEeCCCeEEEEECCCCccee------EEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 6 699999999999999998766443 23334558999999999 8988999999999999985
No 105
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-32 Score=233.58 Aligned_cols=211 Identities=19% Similarity=0.299 Sum_probs=175.9
Q ss_pred eeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEecc--CceeeeeeecccccEEEEEec-C--CCeEEEEeC
Q 035558 30 KSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE--REAVDTQLIAHDKEVYDIAWG-G--VGVFASVSA 104 (253)
Q Consensus 30 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~-~--~~~l~~~~~ 104 (253)
...+.+|. ++|++++|+ +++++|++|+.||.|++||+. +++....+.+|..+|++++|+ + +++|++|+.
T Consensus 2 ~~~l~gH~-----~~V~~l~~s-~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~ 75 (753)
T 3jro_A 2 VVIANAHN-----ELIHDAVLD-YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 75 (753)
T ss_dssp ------CC-----CCEEEECCC-SSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEET
T ss_pred eeecccCc-----ceeEEEEEC-CCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeC
Confidence 35678888 999999999 889999999999999999998 556778888999999999998 6 899999999
Q ss_pred CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC--CCEEEEEEeCCCeEEEEECCCCC-CCeeeecccccceeEEE
Q 035558 105 DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD--PRYMATIIMDSAKVVVLDIRFPT-LPVVELQRHQASVNAIA 181 (253)
Q Consensus 105 dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~i~~~~ 181 (253)
||.|++||+++++. ........+...|.+++|+| + +.++++++.|+. |++||++... .....+..|...|.+++
T Consensus 76 Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~-I~vwdl~~~~~~~~~~~~~~~~~v~~l~ 152 (753)
T 3jro_A 76 DGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGK-VSVVEFKENGTTSPIIIDAHAIGVNSAS 152 (753)
T ss_dssp TSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSE-EEEEECCSSSCCCCEEEECCSSCEEEEE
T ss_pred CCeEEEEECCCCcc-cccccccCCCCCeEEEEECC-CCCCCEEEEEeCCCc-EEEEEeecCCCcceeEeecCCCceEEEE
Confidence 99999999998752 23334456777999999999 6 899999999998 9999998863 33556778999999999
Q ss_pred EecC-------------CCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC---CCceEEEEcC
Q 035558 182 WAPH-------------SSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS---QPDWVAIAFS 245 (253)
Q Consensus 182 ~~~~-------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~ 245 (253)
|+|. + .+|++|+.||.|++||+++..... .......+|..+|++++|+|+ +..+++++.|
T Consensus 153 ~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~---~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~D 228 (753)
T 3jro_A 153 WAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTY---VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228 (753)
T ss_dssp ECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEE---EEEEEECCCSSCEEEEEECCCCSSSEEEEEEESS
T ss_pred ecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccc---eeeeeecCCCCcEEEEEeccCCCCCCEEEEEecC
Confidence 9994 6 699999999999999999875322 112355689999999999999 8888899999
Q ss_pred CcEEEEEC
Q 035558 246 TKLQILRV 253 (253)
Q Consensus 246 ~~i~vw~l 253 (253)
+.|++|++
T Consensus 229 g~I~iwd~ 236 (753)
T 3jro_A 229 RTCIIWTQ 236 (753)
T ss_dssp SCEEEEEE
T ss_pred CEEEEecC
Confidence 99999984
No 106
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=9.9e-31 Score=211.31 Aligned_cols=216 Identities=18% Similarity=0.246 Sum_probs=186.1
Q ss_pred CceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558 5 PDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI 82 (253)
Q Consensus 5 ~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 82 (253)
+.++++++ + .|++||+.++ +....+.+|. ..|.+++|+ ++.+++|+.||.|++||+++++.+..+.
T Consensus 169 ~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~h~-----~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~ 236 (445)
T 2ovr_B 169 DNIIISGSTDRTLKVWNAETG----ECIHTLYGHT-----STVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLM 236 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTT----EEEEEECCCS-----SCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCcC----cEEEEECCCC-----CcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEEEEEc
Confidence 45777776 5 9999999987 7888899998 899999997 5789999999999999999999999999
Q ss_pred cccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCC
Q 035558 83 AHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF 162 (253)
Q Consensus 83 ~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~ 162 (253)
+|...|.+++| +++.+++++.||.|++||+++++.. .....+...|.+++| ++.++++++.|+. |++||+++
T Consensus 237 ~~~~~v~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~---~~~~l~~~~~d~~-i~i~d~~~ 308 (445)
T 2ovr_B 237 GHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPETETCL---HTLQGHTNRVYSLQF---DGIHVVSGSLDTS-IRVWDVET 308 (445)
T ss_dssp CCSSCEEEEEE-CSSCEEEEETTSCEEEEEGGGTEEE---EEECCCSSCEEEEEE---CSSEEEEEETTSC-EEEEETTT
T ss_pred CCcccEEEEEE-CCCEEEEEcCCCEEEEEECCCCcEe---EEecCCCCceEEEEE---CCCEEEEEeCCCe-EEEEECCC
Confidence 99999999999 6889999999999999999987643 333466679999999 6789999999999 99999998
Q ss_pred CCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeec---cCCCceeEEEEcCCCCce
Q 035558 163 PTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAY---TAGAEIEQLQWSSSQPDW 239 (253)
Q Consensus 163 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~ 239 (253)
.+ ++..+.+|...+.++.++ + .+|++|+.||.|++||+++++... ... .|...|.+++|++ +.+
T Consensus 309 ~~-~~~~~~~~~~~v~~~~~~--~-~~l~~~~~dg~i~vwd~~~~~~~~-------~~~~~~~~~~~v~~~~~~~--~~l 375 (445)
T 2ovr_B 309 GN-CIHTLTGHQSLTSGMELK--D-NILVSGNADSTVKIWDIKTGQCLQ-------TLQGPNKHQSAVTCLQFNK--NFV 375 (445)
T ss_dssp CC-EEEEECCCCSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCCEEE-------EECSTTSCSSCEEEEEECS--SEE
T ss_pred CC-EEEEEcCCcccEEEEEEe--C-CEEEEEeCCCeEEEEECCCCcEEE-------EEccCCCCCCCEEEEEECC--CEE
Confidence 66 478888999999988875 4 489999999999999998876432 333 3889999999974 578
Q ss_pred EEEEcCCcEEEEEC
Q 035558 240 VAIAFSTKLQILRV 253 (253)
Q Consensus 240 ~~~~~~~~i~vw~l 253 (253)
++++.|+.|++|++
T Consensus 376 ~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 376 ITSSDDGTVKLWDL 389 (445)
T ss_dssp EEEETTSEEEEEET
T ss_pred EEEeCCCeEEEEEC
Confidence 89999999999985
No 107
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.8e-31 Score=208.16 Aligned_cols=217 Identities=12% Similarity=0.096 Sum_probs=180.0
Q ss_pred CCc-eEEeec-C-cEEEEEc-cCCccccceeeeecC--CCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC---
Q 035558 4 KPD-LLATSS-D-FLRVWRI-SDEDRRVELKSLLNG--NKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER--- 74 (253)
Q Consensus 4 ~~~-~l~~~~-~-~v~iw~~-~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--- 74 (253)
++. +|++++ + .|++|++ ..+ ....+.+ |. ..|.+++|+ + +++|++++.|+.|++||+++
T Consensus 67 ~~~~~l~~~~~dg~i~~wd~~~~~-----~~~~~~~~~~~-----~~v~~l~~~-~-~~~l~s~~~d~~i~iwd~~~~~~ 134 (342)
T 1yfq_A 67 NTDLQIYVGTVQGEILKVDLIGSP-----SFQALTNNEAN-----LGICRICKY-G-DDKLIAASWDGLIEVIDPRNYGD 134 (342)
T ss_dssp SSSEEEEEEETTSCEEEECSSSSS-----SEEECBSCCCC-----SCEEEEEEE-T-TTEEEEEETTSEEEEECHHHHTT
T ss_pred CCCcEEEEEcCCCeEEEEEeccCC-----ceEeccccCCC-----CceEEEEeC-C-CCEEEEEcCCCeEEEEccccccc
Confidence 466 677766 5 9999999 774 3466777 88 899999999 5 89999999999999999988
Q ss_pred ------ceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCC-CCCeeeeeccCCCCCCeeEEEeeCCCCCEEE
Q 035558 75 ------EAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRD-KEHSTIIYESSEPDTPLVRLGWNKQDPRYMA 146 (253)
Q Consensus 75 ------~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 146 (253)
++.+..+. |...|.+++|+ ++ +++++.|+.|++||+++ ....... ....+...+.+++|+|.++++++
T Consensus 135 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~~l~ 210 (342)
T 1yfq_A 135 GVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTI-EESGLKYQIRDVALLPKEQEGYA 210 (342)
T ss_dssp BCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEE-EECSCSSCEEEEEECSGGGCEEE
T ss_pred ccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCcccccccee-eecCCCCceeEEEECCCCCCEEE
Confidence 77777776 88999999998 54 99999999999999998 5432222 22345568999999984568999
Q ss_pred EEEeCCCeEEEEECCCC-----CCCeeeeccccc---------ceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCC
Q 035558 147 TIIMDSAKVVVLDIRFP-----TLPVVELQRHQA---------SVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVE 212 (253)
Q Consensus 147 ~~~~~~~~i~~~d~~~~-----~~~~~~~~~~~~---------~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 212 (253)
+++.++. |++||++.. ..+...+..|.. .|.+++|+|++ .+|++++.||.|++||+.+++...
T Consensus 211 ~~~~dg~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~- 287 (342)
T 1yfq_A 211 CSSIDGR-VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKKIK- 287 (342)
T ss_dssp EEETTSE-EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTTTEEEE-
T ss_pred EEecCCc-EEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCC-CEEEEecCCceEEEEcCccHhHhh-
Confidence 9999988 999999876 355777887765 99999999999 699999999999999999876443
Q ss_pred CCCCCeeeccC-CCceeEEEEcCCCCceEEEEcCCc
Q 035558 213 GGLDPILAYTA-GAEIEQLQWSSSQPDWVAIAFSTK 247 (253)
Q Consensus 213 ~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~ 247 (253)
.+.+| ..+|.+++ |+++.+++++.|+.
T Consensus 288 ------~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 288 ------NFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp ------ECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred ------hhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 56677 99999999 99998999999987
No 108
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-31 Score=231.12 Aligned_cols=233 Identities=15% Similarity=0.184 Sum_probs=177.0
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
+++.+||+|+ | .|++|+.... +....+ .|. .+|.+++|+ + +++|++++.|++|++||+++++.+..
T Consensus 27 pdg~~lAsgs~Dg~I~lw~~~~~----~~~~~~-~~~-----~~V~~l~fs-p-g~~L~S~s~D~~v~lWd~~~~~~~~~ 94 (902)
T 2oaj_A 27 FTQNLLAIATVTGEVHIYGQQQV----EVVIKL-EDR-----SAIKEMRFV-K-GIYLVVINAKDTVYVLSLYSQKVLTT 94 (902)
T ss_dssp TTTTEEEEEETTSEEEEECSTTC----EEEEEC-SSC-----CCEEEEEEE-T-TTEEEEEETTCEEEEEETTTCSEEEE
T ss_pred CCCCEEEEEeCCCEEEEEeCCCc----EEEEEc-CCC-----CCEEEEEEc-C-CCEEEEEECcCeEEEEECCCCcEEEE
Confidence 4677888888 4 9999998774 444333 355 789999999 5 77999999999999999999988888
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeee--------eccCCCCCCeeEEEeeCCCCCEEEEEEeC
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTII--------YESSEPDTPLVRLGWNKQDPRYMATIIMD 151 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 151 (253)
+. |...|++++|+ +++++++|+.||.|++||+++.+..... .....|.++|.+++|+|.++..+++++.+
T Consensus 95 ~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~d 173 (902)
T 2oaj_A 95 VF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEY 173 (902)
T ss_dssp EE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSS
T ss_pred Ec-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCC
Confidence 86 77899999999 9999999999999999999987632111 22356778999999999556788998888
Q ss_pred CCeEEEEECCCCCCCeeeeccc------------------ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCC-
Q 035558 152 SAKVVVLDIRFPTLPVVELQRH------------------QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVE- 212 (253)
Q Consensus 152 ~~~i~~~d~~~~~~~~~~~~~~------------------~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~- 212 (253)
+. | +||+++.+ ++..+..| ...|++++|+|++ .+|++++.||+|++||+++++....
T Consensus 174 g~-v-lWd~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r 249 (902)
T 2oaj_A 174 VT-L-TYSLVENE-IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMAR 249 (902)
T ss_dssp CE-E-EEETTTTE-EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred Cc-E-EEECCCCc-eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEE
Confidence 87 9 99999754 35555544 5779999999999 6999999999999999988653210
Q ss_pred -C----CCCC-----eeeccCCCceeEEEEc----CCCCceE-EEEcCC-----cEEEEE
Q 035558 213 -G----GLDP-----ILAYTAGAEIEQLQWS----SSQPDWV-AIAFST-----KLQILR 252 (253)
Q Consensus 213 -~----~~~~-----~~~~~~~~~v~~~~~~----~~~~~~~-~~~~~~-----~i~vw~ 252 (253)
. ...+ .....|..+|++++|+ |++..++ +++.+. .+++|+
T Consensus 250 ~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~ 309 (902)
T 2oaj_A 250 TVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMID 309 (902)
T ss_dssp CSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEE
T ss_pred eecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEe
Confidence 0 0000 0000245689999995 4443455 454542 677775
No 109
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-31 Score=215.77 Aligned_cols=191 Identities=8% Similarity=0.098 Sum_probs=156.1
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccc-----cEEEEEec-CCCeEEEEeCCCcEEEEEcCCC
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDK-----EVYDIAWG-GVGVFASVSADGSVRVFDLRDK 116 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~ 116 (253)
..|.+++|+ |++.+||+++.||.|++||.+. ++..+. |.. .+.+++|+ ++++|++|+.||+|++||+.++
T Consensus 86 ~~V~~vawS-PdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~ 161 (588)
T 2j04_A 86 CYPRVCKPS-PIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKN 161 (588)
T ss_dssp CCEEEEEEC-SSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCC
T ss_pred CcEEEEEEC-CCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence 789999999 8999999999999999999654 555566 665 49999999 9999999999999999999987
Q ss_pred CC-------eeeee-ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC--Ceeee-cccccceeEEEEecC
Q 035558 117 EH-------STIIY-ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL--PVVEL-QRHQASVNAIAWAPH 185 (253)
Q Consensus 117 ~~-------~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~--~~~~~-~~~~~~i~~~~~~~~ 185 (253)
.. ...+. ...+|...|.+++|+| ++ +++++.|+. |++||+..... ....+ .+|...|.+++|+
T Consensus 162 ~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~t-VrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-- 235 (588)
T 2j04_A 162 SENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNS-VFSMTVSASSHQPVSRMIQNASRRKITDLKIV-- 235 (588)
T ss_dssp TTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCC-EEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--
T ss_pred ccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCe-EEEEECCCCccccceeeecccccCcEEEEEEE--
Confidence 53 11211 1245677999999999 77 788888888 99999987653 23456 4788999999999
Q ss_pred CCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEE--cCCCCceEEEEcCCcEEEEEC
Q 035558 186 SSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQW--SSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 186 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~i~vw~l 253 (253)
+ +.|++++ +++|++||+.+..... ...+|...+.+++| +|++..+++++.+|. ++|.+
T Consensus 236 g-~~LASa~-~~tIkLWd~~~~~~~~-------~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 236 D-YKVVLTC-PGYVHKIDLKNYSISS-------LKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp T-TEEEEEC-SSEEEEEETTTTEEEE-------EECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred C-CEEEEEe-CCeEEEEECCCCeEEE-------EEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence 5 5899887 6999999999866322 34489999999999 999986777777888 99974
No 110
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=8.9e-31 Score=205.67 Aligned_cols=218 Identities=11% Similarity=0.103 Sum_probs=167.7
Q ss_pred CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEE-EEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRI-GTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
+++.+|++|++ .+++|+++.. +...... . ..+..+++. ++++.+ ++++.|+.|++||..+++.+..
T Consensus 29 ~dg~~la~g~~~~~~iw~~~~~----~~~~~~~--~-----~~~~~~~~~-~~~~~~~~~~~~d~~v~iWd~~~~~~~~~ 96 (355)
T 3vu4_A 29 QDQSCLILSTLKSFEIYNVHPV----AHIMSQE--M-----RHLSKVRML-HRTNYVAFVTGVKEVVHIWDDVKKQDVSR 96 (355)
T ss_dssp TTSSEEEEECSSEEEEEEETTE----EEEEEEE--C-----SCCCEEEEC-TTSSEEEEECSSTTEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEcCCEEEEEecCCc----ceeeeee--c-----CCeEEEEEc-CCCCEEEEEECCccEEEEEECCCCcEEEE
Confidence 46789999987 8999998874 3333222 1 246677887 556655 6678889999999999998888
Q ss_pred eecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCC-CCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE--EeCCCeEEE
Q 035558 81 LIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDK-EHSTIIYESSEPDTPLVRLGWNKQDPRYMATI--IMDSAKVVV 157 (253)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~--~~~~~~i~~ 157 (253)
+. +..+|.+++++ .+.++++ .|+.|++||+.+. +....+.. +...+++++ .+++++ +.++. |++
T Consensus 97 ~~-~~~~v~~v~~~-~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~------~~~~~~~s~---~~la~~sg~~~g~-v~i 163 (355)
T 3vu4_A 97 IK-VDAPVKDLFLS-REFIVVS-YGDVISVFKFGNPWKRITDDIR------FGGVCEFSN---GLLVYSNEFNLGQ-IHI 163 (355)
T ss_dssp EE-CSSCEEEEEEC-SSEEEEE-ETTEEEEEESSTTCCBSSCCEE------EEEEEEEET---TEEEEEESSCTTC-EEE
T ss_pred EE-CCCceEEEEEc-CCEEEEE-EcCEEEEEECCCCceeeEEecc------CCceEEEEc---cEEEEeCCCcCcE-EEE
Confidence 87 67799999997 2334443 4789999999987 43333222 344556666 566664 66777 999
Q ss_pred EECCCCC--------------CC-eeeecccccceeEEEEecCCCCeEEEecCCCc-EEEEeccCCCCCCCCCCCCeeec
Q 035558 158 LDIRFPT--------------LP-VVELQRHQASVNAIAWAPHSSCHICTAGDDSQ-ALIWDLSSMGQPVEGGLDPILAY 221 (253)
Q Consensus 158 ~d~~~~~--------------~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~ 221 (253)
||+++.. .+ +..+.+|...|++++|+|++ ++|++|+.|++ |++||+++++... .+.
T Consensus 164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~~~~-------~~~ 235 (355)
T 3vu4_A 164 TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGVLVR-------EFR 235 (355)
T ss_dssp EECCC------------------CCEEECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCCEEE-------EEE
T ss_pred EECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCcEEE-------EEE
Confidence 9998754 12 67889999999999999999 69999999998 9999999877543 444
Q ss_pred -c-CCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 222 -T-AGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 222 -~-~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
+ |...|.+++|+|+++++++++.|+.+++|++
T Consensus 236 ~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~ 269 (355)
T 3vu4_A 236 RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI 269 (355)
T ss_dssp CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence 4 9999999999999999999999999999985
No 111
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=7.8e-31 Score=206.08 Aligned_cols=210 Identities=11% Similarity=0.187 Sum_probs=166.5
Q ss_pred cceeeeecCCCCccccCCeeEEEecCCC---CCEEEEEeCCCeEEEEeccC-ceee-eeeecccccEEEEEec-CCCeEE
Q 035558 27 VELKSLLNGNKNSEYCGPLTSFDWNEAE---PRRIGTSSIDTTCTIWDIER-EAVD-TQLIAHDKEVYDIAWG-GVGVFA 100 (253)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~vwd~~~-~~~~-~~~~~~~~~v~~~~~~-~~~~l~ 100 (253)
.+....+.+|. ..|++++|+ ++ +++|++|+.||.|++||+++ +..+ ..+.+|...|.+++|+ ++++|+
T Consensus 29 ~~~~~~~~~h~-----~~v~~~~~~-~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 29 MKDIEVTSSPD-----DSIGCLSFS-PPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp TCCEECSSCCS-----SCEEEEEEC-CTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred cceeEeccCCC-----CceEEEEEc-CCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence 46777888998 899999999 55 69999999999999999987 4444 6788999999999999 999999
Q ss_pred EEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEe--eCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccc----
Q 035558 101 SVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGW--NKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQ---- 174 (253)
Q Consensus 101 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---- 174 (253)
+++.||.|++||+++++.... ..+...|.+++| +| ++.++++++.|+. |++||+++.+. +..+..+.
T Consensus 103 s~~~dg~v~iwd~~~~~~~~~----~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~-i~vwd~~~~~~-~~~~~~~~~~~~ 175 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQAIQI----AQHDAPVKTIHWIKAP-NYSCVMTGSWDKT-LKFWDTRSSNP-MMVLQLPERCYC 175 (368)
T ss_dssp EEETTSEEEEEETTTTEEEEE----EECSSCEEEEEEEECS-SCEEEEEEETTSE-EEEECSSCSSC-SEEEECSSCEEE
T ss_pred EEcCCCcEEEEEcCCCCceee----ccccCceEEEEEEeCC-CCCEEEEccCCCc-EEEEECCCCcE-EEEEecCCCceE
Confidence 999999999999998864332 246679999999 77 8889999999998 99999987653 44443322
Q ss_pred -------------------------------------cceeEEEEecCCC---CeEEEecCCCcEEEEeccCCCCCCCCC
Q 035558 175 -------------------------------------ASVNAIAWAPHSS---CHICTAGDDSQALIWDLSSMGQPVEGG 214 (253)
Q Consensus 175 -------------------------------------~~i~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~ 214 (253)
..+.++++.++.. ..+++++.||.|++||++......
T Consensus 176 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~--- 252 (368)
T 3mmy_A 176 ADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK--- 252 (368)
T ss_dssp EEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHH---
T ss_pred EEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccc---
Confidence 2344455555441 129999999999999998764210
Q ss_pred CCCeeeccCCC------------ceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 215 LDPILAYTAGA------------EIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 215 ~~~~~~~~~~~------------~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
.......|.. +|.+++|+|+++++++++.|+.|++|++
T Consensus 253 -~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~ 302 (368)
T 3mmy_A 253 -DNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK 302 (368)
T ss_dssp -HSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred -cceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEEC
Confidence 0123444443 7999999999999999999999999985
No 112
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.6e-31 Score=208.61 Aligned_cols=190 Identities=9% Similarity=0.103 Sum_probs=152.5
Q ss_pred CCCceEEe--ec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558 3 QKPDLLAT--SS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD 78 (253)
Q Consensus 3 ~~~~~l~~--~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 78 (253)
++|+++++ ++ + +|+|||+.+. +.+..+. |. ..|.+++|+ |+++++++++.+ .+++|+..+++.+
T Consensus 143 pDg~~la~as~~~d~~i~iwd~~~~----~~~~~~~-~~-----~~V~~v~fs-pdg~~l~s~s~~-~~~~~~~~~~~~~ 210 (365)
T 4h5i_A 143 REGTVAAIASSKVPAIMRIIDPSDL----TEKFEIE-TR-----GEVKDLHFS-TDGKVVAYITGS-SLEVISTVTGSCI 210 (365)
T ss_dssp TTSSCEEEEESCSSCEEEEEETTTT----EEEEEEE-CS-----SCCCEEEEC-TTSSEEEEECSS-CEEEEETTTCCEE
T ss_pred CCCCEEEEEECCCCCEEEEeECCCC----cEEEEeC-CC-----CceEEEEEc-cCCceEEeccce-eEEEEEeccCcce
Confidence 35666543 33 4 8999999987 6666665 55 689999999 899999999865 5666666666544
Q ss_pred e--eeecccccEEEEEec-CCCeEEEEeCCC----cEEEEEcCCCCCee-eeeccCCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558 79 T--QLIAHDKEVYDIAWG-GVGVFASVSADG----SVRVFDLRDKEHST-IIYESSEPDTPLVRLGWNKQDPRYMATIIM 150 (253)
Q Consensus 79 ~--~~~~~~~~v~~~~~~-~~~~l~~~~~dg----~i~i~d~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 150 (253)
. ....|...|.+++|+ ++..+++++.|+ .+++||+....... .......+...|++++|+| ++++||+|+.
T Consensus 211 ~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~ 289 (365)
T 4h5i_A 211 ARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASN 289 (365)
T ss_dssp EEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEET
T ss_pred eeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcC
Confidence 3 345788999999999 999999999887 68889987765322 2233446667999999999 9999999999
Q ss_pred CCCeEEEEECCCCCCCeee-ecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558 151 DSAKVVVLDIRFPTLPVVE-LQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 151 ~~~~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
|+. |++||+++.+. +.. +.+|...|++++|+|++ ++|++||.|++|+|||+....
T Consensus 290 D~~-V~iwd~~~~~~-~~~~~~gH~~~V~~v~fSpdg-~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 290 DNS-IALVKLKDLSM-SKIFKQAHSFAITEVTISPDS-TYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp TSC-EEEEETTTTEE-EEEETTSSSSCEEEEEECTTS-CEEEEEETTSEEEEEECCTTT
T ss_pred CCE-EEEEECCCCcE-EEEecCcccCCEEEEEECCCC-CEEEEEeCCCeEEEEEcCCCC
Confidence 999 99999998664 655 57899999999999999 699999999999999997543
No 113
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-30 Score=201.79 Aligned_cols=221 Identities=10% Similarity=0.070 Sum_probs=163.3
Q ss_pred EEeec-C-cEEEEEccCCc-----cccceeeeec-CCCCccccCCeeEEEecCC--CCCEEEEEeCCCeEEEEeccCcee
Q 035558 8 LATSS-D-FLRVWRISDED-----RRVELKSLLN-GNKNSEYCGPLTSFDWNEA--EPRRIGTSSIDTTCTIWDIEREAV 77 (253)
Q Consensus 8 l~~~~-~-~v~iw~~~~~~-----~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~ 77 (253)
+++++ | +|++|+..... ...+.+.... +|. .+|.+++|+ + +++++++|+.||.|++||+++++.
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~-~~~~~~~l~s~s~dg~i~~wd~~~~~~ 161 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSA-----NEIIYMYGH-NEVNTEYFIWADNRGTIGFQSYEDDSQ 161 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCS-----SCEEEEECC-C---CCEEEEEETTCCEEEEESSSSCE
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCC-----CCEEEEEcC-CCCCCCEEEEEeCCCcEEEEECCCCcE
Confidence 56665 5 99999876420 0012233332 555 789999999 7 899999999999999999999888
Q ss_pred eeeee-cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558 78 DTQLI-AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV 155 (253)
Q Consensus 78 ~~~~~-~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i 155 (253)
..... .|...|.+++|+ ++.+|++|+.||.|++||+++++....... ..|..+|.+++|+| ++.+|++++ ++. |
T Consensus 162 ~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~-~~h~~~v~~l~fs~-~g~~l~s~~-~~~-v 237 (343)
T 3lrv_A 162 YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFP-VDEEAKIKEVKFAD-NGYWMVVEC-DQT-V 237 (343)
T ss_dssp EEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECC-CCTTSCEEEEEECT-TSSEEEEEE-SSB-E
T ss_pred EEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEe-ccCCCCEEEEEEeC-CCCEEEEEe-CCe-E
Confidence 66554 455689999999 999999999999999999999875411221 13677999999999 999999999 556 9
Q ss_pred EEEECCCCCCCeeeec---cccccee--EEEEecCCCCeEEEecC-CCcEEEEeccCCCCCCCCCCCCeeeccCCCceeE
Q 035558 156 VVLDIRFPTLPVVELQ---RHQASVN--AIAWAPHSSCHICTAGD-DSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQ 229 (253)
Q Consensus 156 ~~~d~~~~~~~~~~~~---~~~~~i~--~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~ 229 (253)
++||+++... +..+. .|...+. +++|+|++ ++|++++. |+.|++|++....... .. .++..
T Consensus 238 ~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~s~~d~~i~v~~~~~~~~~~-------~~----~~~~~ 304 (343)
T 3lrv_A 238 VCFDLRKDVG-TLAYPTYTIPEFKTGTVTYDIDDSG-KNMIAYSNESNSLTIYKFDKKTKNW-------TK----DEESA 304 (343)
T ss_dssp EEEETTSSTT-CBSSCCCBC-----CCEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCSE-------EE----EEEEE
T ss_pred EEEEcCCCCc-ceeecccccccccccceEEEECCCC-CEEEEecCCCCcEEEEEEcccccce-------Ee----cCcee
Confidence 9999998663 33333 2444444 69999999 69999887 9999999997765332 11 56777
Q ss_pred EEEcC---CCCceEEEEcCCcEEEE
Q 035558 230 LQWSS---SQPDWVAIAFSTKLQIL 251 (253)
Q Consensus 230 ~~~~~---~~~~~~~~~~~~~i~vw 251 (253)
++|.+ +...+++++.|+.+.++
T Consensus 305 ~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 305 LCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp CCC----CCCCEEEEEEETTEEEEE
T ss_pred EecCccccccceeEEEecCCceEEE
Confidence 88887 77777788888877765
No 114
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-30 Score=209.16 Aligned_cols=226 Identities=8% Similarity=0.008 Sum_probs=176.3
Q ss_pred CCce-EEeec-C-cEEEEEcc--CCccccceeeeec--CCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce
Q 035558 4 KPDL-LATSS-D-FLRVWRIS--DEDRRVELKSLLN--GNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA 76 (253)
Q Consensus 4 ~~~~-l~~~~-~-~v~iw~~~--~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 76 (253)
++.+ +++++ + .|++|++. .+ +....+. .|. ..|.+++|+ +++++|++|+.+|.|++|++.+++
T Consensus 113 d~~~l~~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~-----~~v~~~~~s-p~~~~l~~~~~~g~v~~~~~~~~~ 182 (450)
T 2vdu_B 113 DESRLIACADSDKSLLVFDVDKTSK----NVLKLRKRFCFS-----KRPNAISIA-EDDTTVIIADKFGDVYSIDINSIP 182 (450)
T ss_dssp TSSEEEEEEGGGTEEEEEEECSSSS----SCEEEEEEEECS-----SCEEEEEEC-TTSSEEEEEETTSEEEEEETTSCC
T ss_pred CCCEEEEEECCCCeEEEEECcCCCC----ceeeeeecccCC-----CCceEEEEc-CCCCEEEEEeCCCcEEEEecCCcc
Confidence 4445 47776 5 99999998 65 5666665 455 789999999 899999999999999999998877
Q ss_pred eee----eeecccccEEEEEec-C---CCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558 77 VDT----QLIAHDKEVYDIAWG-G---VGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI 148 (253)
Q Consensus 77 ~~~----~~~~~~~~v~~~~~~-~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 148 (253)
... .+.+|...|++++|+ + +.+|++++.|+.|++||+++++..... ...|...|.+++|+ ++.+|+++
T Consensus 183 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~h~~~v~~~~~s--d~~~l~s~ 258 (450)
T 2vdu_B 183 EEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW--LFGHKHFVSSICCG--KDYLLLSA 258 (450)
T ss_dssp CSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE--CCCCSSCEEEEEEC--STTEEEEE
T ss_pred cccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee--ecCCCCceEEEEEC--CCCEEEEE
Confidence 554 778899999999999 8 889999999999999999988754332 34567799999999 88999999
Q ss_pred EeCCCeEEEEECCCCCCCeeeecc-------------------------cccceeEEEEecCCCCeEEEec-CCCcEEEE
Q 035558 149 IMDSAKVVVLDIRFPTLPVVELQR-------------------------HQASVNAIAWAPHSSCHICTAG-DDSQALIW 202 (253)
Q Consensus 149 ~~~~~~i~~~d~~~~~~~~~~~~~-------------------------~~~~i~~~~~~~~~~~~l~~~~-~dg~i~iw 202 (253)
+.|+. |++||+++++. +..+.. ....|.+++|+|++ .+|++++ .|+.|++|
T Consensus 259 ~~d~~-v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~d~~i~iw 335 (450)
T 2vdu_B 259 GGDDK-IFAWDWKTGKN-LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL-PFVAFFVEATKCIIIL 335 (450)
T ss_dssp ESSSE-EEEEETTTCCE-EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS-SEEEEEETTCSEEEEE
T ss_pred eCCCe-EEEEECCCCcE-eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC-CEEEEEECCCCeEEEE
Confidence 99998 99999998653 555542 23568999999999 5888887 89999999
Q ss_pred ec--cCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEc-------CCcEEEEE
Q 035558 203 DL--SSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAF-------STKLQILR 252 (253)
Q Consensus 203 d~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------~~~i~vw~ 252 (253)
++ ....... .......| ..|.+++|+|++ .+++.+. ++.|.+|.
T Consensus 336 ~~~~~~~~~l~----~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~ 388 (450)
T 2vdu_B 336 EMSEKQKGDLA----LKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIE 388 (450)
T ss_dssp EECSSSTTCEE----EEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEE
T ss_pred EeccCCCCcee----eccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEE
Confidence 99 4332111 01234445 889999999954 4555543 44578875
No 115
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-31 Score=228.55 Aligned_cols=206 Identities=11% Similarity=0.129 Sum_probs=166.6
Q ss_pred cCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEc
Q 035558 34 NGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDL 113 (253)
Q Consensus 34 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~ 113 (253)
.+|. ..|++++|+ |++++||+|+.||.|++|+....+....+. |..+|.+++|+.+++|++++.|++|++||+
T Consensus 14 ~gh~-----~~V~~lafs-pdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fspg~~L~S~s~D~~v~lWd~ 86 (902)
T 2oaj_A 14 YGMS-----SKPIAAAFD-FTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVKGIYLVVINAKDTVYVLSL 86 (902)
T ss_dssp EECS-----SCEEEEEEE-TTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEETTTEEEEEETTCEEEEEET
T ss_pred cCCC-----CCcEEEEEC-CCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcCCCEEEEEECcCeEEEEEC
Confidence 3677 899999999 899999999999999999998777655543 788999999995558999999999999999
Q ss_pred CCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCe----------eeecccccceeEEEEe
Q 035558 114 RDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPV----------VELQRHQASVNAIAWA 183 (253)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~----------~~~~~~~~~i~~~~~~ 183 (253)
++++....+. +...|++++|+| +++++++|+.|+. |++||+++..... ..+.+|...|++++|+
T Consensus 87 ~~~~~~~~~~----~~~~V~~v~~sp-~g~~l~sgs~dg~-V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~s 160 (902)
T 2oaj_A 87 YSQKVLTTVF----VPGKITSIDTDA-SLDWMLIGLQNGS-MIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWN 160 (902)
T ss_dssp TTCSEEEEEE----CSSCEEEEECCT-TCSEEEEEETTSC-EEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEE
T ss_pred CCCcEEEEEc----CCCCEEEEEECC-CCCEEEEEcCCCc-EEEEECCCCccccceeccccccccccccCCCCeEEEEEc
Confidence 9887544442 345899999999 9999999999999 9999998754210 2346788999999999
Q ss_pred cCCCCeEEEecCCCcEEEEeccCCCCCCCCCCC-----C------eeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 184 PHSSCHICTAGDDSQALIWDLSSMGQPVEGGLD-----P------ILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 184 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
|++...|++|+.||.| +||+++.+........ + .....|...|++++|+|+++++++++.|+.|++|+
T Consensus 161 p~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd 239 (902)
T 2oaj_A 161 PRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWD 239 (902)
T ss_dssp TTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred cCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Confidence 9754689999999999 9999886532200000 0 01123467899999999999999999999999998
Q ss_pred C
Q 035558 253 V 253 (253)
Q Consensus 253 l 253 (253)
+
T Consensus 240 ~ 240 (902)
T 2oaj_A 240 A 240 (902)
T ss_dssp T
T ss_pred C
Confidence 5
No 116
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.98 E-value=9.8e-31 Score=205.48 Aligned_cols=209 Identities=14% Similarity=0.191 Sum_probs=167.1
Q ss_pred eecCCCCccccCCeeEEEecCC---CCCEEEEEeCCCeEEEEeccCceeeeeeec-----ccccEEEEEec-C----CCe
Q 035558 32 LLNGNKNSEYCGPLTSFDWNEA---EPRRIGTSSIDTTCTIWDIEREAVDTQLIA-----HDKEVYDIAWG-G----VGV 98 (253)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~-~----~~~ 98 (253)
...+|. .+|++++|+|. ....+++++.++.|++||+.+++.+..+.. |...|.+++|+ + +.+
T Consensus 13 ~~~~h~-----~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 87 (366)
T 3k26_A 13 LKEDHN-----QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPL 87 (366)
T ss_dssp EECTTC-----SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEE
T ss_pred eecCCC-----CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCE
Confidence 445788 89999999952 355566666778999999998877666654 55789999999 6 679
Q ss_pred EEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeee---ccccc
Q 035558 99 FASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVEL---QRHQA 175 (253)
Q Consensus 99 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~---~~~~~ 175 (253)
|++++.||.|++||+.+++.... ...+...|.+++|+|.++.+|++++.|+. |++||+++.+ .+..+ ..|..
T Consensus 88 l~~~~~dg~i~v~d~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~-~~~~~~~~~~~~~ 162 (366)
T 3k26_A 88 LAVAGSRGIIRIINPITMQCIKH---YVGHGNAINELKFHPRDPNLLLSVSKDHA-LRLWNIQTDT-LVAIFGGVEGHRD 162 (366)
T ss_dssp EEEEETTCEEEEECTTTCCEEEE---EESCCSCEEEEEECSSCTTEEEEEETTSC-EEEEETTTTE-EEEEECSTTSCSS
T ss_pred EEEecCCCEEEEEEchhceEeee---ecCCCCcEEEEEECCCCCCEEEEEeCCCe-EEEEEeecCe-EEEEecccccccC
Confidence 99999999999999998874433 34567799999999978899999999999 9999999765 35665 67999
Q ss_pred ceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCC---------------------CCCCCeeeccCCCceeEEEEcC
Q 035558 176 SVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVE---------------------GGLDPILAYTAGAEIEQLQWSS 234 (253)
Q Consensus 176 ~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------------------~~~~~~~~~~~~~~v~~~~~~~ 234 (253)
.|.+++|+|++ .+|++++.||.|++||+++.+.... ..........|...|.+++|+
T Consensus 163 ~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~- 240 (366)
T 3k26_A 163 EVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL- 240 (366)
T ss_dssp CEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-
T ss_pred ceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-
Confidence 99999999998 6999999999999999987542110 000011223489999999999
Q ss_pred CCCceEEEEcCCcEEEEEC
Q 035558 235 SQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 235 ~~~~~~~~~~~~~i~vw~l 253 (253)
+..+++++.|+.|++|++
T Consensus 241 -~~~l~~~~~d~~i~~wd~ 258 (366)
T 3k26_A 241 -GDLILSKSCENAIVCWKP 258 (366)
T ss_dssp -TTEEEEECSSSEEEEEEE
T ss_pred -CCEEEEEecCCEEEEEeC
Confidence 557889999999999984
No 117
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=9.3e-29 Score=194.18 Aligned_cols=228 Identities=13% Similarity=0.152 Sum_probs=165.0
Q ss_pred CceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-eeeeee
Q 035558 5 PDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-AVDTQL 81 (253)
Q Consensus 5 ~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~ 81 (253)
..++++++ + +|++||..++ +.+..+. +. .+|.+++|+ ++ .++++. |+.|++||+.++ +.+..+
T Consensus 71 ~~~~~~~~~d~~v~iWd~~~~----~~~~~~~-~~-----~~v~~v~~~-~~--~~~~~~-~~~i~i~d~~~~~~~~~~~ 136 (355)
T 3vu4_A 71 NYVAFVTGVKEVVHIWDDVKK----QDVSRIK-VD-----APVKDLFLS-RE--FIVVSY-GDVISVFKFGNPWKRITDD 136 (355)
T ss_dssp SEEEEECSSTTEEEEEETTTT----EEEEEEE-CS-----SCEEEEEEC-SS--EEEEEE-TTEEEEEESSTTCCBSSCC
T ss_pred CEEEEEECCccEEEEEECCCC----cEEEEEE-CC-----CceEEEEEc-CC--EEEEEE-cCEEEEEECCCCceeeEEe
Confidence 33434444 5 9999999887 6677776 44 689999998 43 455544 789999999988 777666
Q ss_pred ecccccEEEEEecCCCeEEE--EeCCCcEEEEEcCCCCCe------------ee-eeccCCCCCCeeEEEeeCCCCCEEE
Q 035558 82 IAHDKEVYDIAWGGVGVFAS--VSADGSVRVFDLRDKEHS------------TI-IYESSEPDTPLVRLGWNKQDPRYMA 146 (253)
Q Consensus 82 ~~~~~~v~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~------------~~-~~~~~~~~~~i~~~~~~~~~~~~l~ 146 (253)
.. +...++++. ..++. |+.||.|++||++++... .. +.....|...|.+++|+| ++++|+
T Consensus 137 ~~---~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~ 211 (355)
T 3vu4_A 137 IR---FGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVA 211 (355)
T ss_dssp EE---EEEEEEEET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEE
T ss_pred cc---CCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEE
Confidence 64 223333333 56666 588999999999975410 01 333457788999999999 999999
Q ss_pred EEEeCCCeEEEEECCCCCCCeeeec-c-cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCC-------
Q 035558 147 TIIMDSAKVVVLDIRFPTLPVVELQ-R-HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDP------- 217 (253)
Q Consensus 147 ~~~~~~~~i~~~d~~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------- 217 (253)
+++.|+..|++||+++.+. +..+. + |...|++++|+|++ ++|++++.|++|++||++............
T Consensus 212 s~s~d~~~v~iwd~~~~~~-~~~~~~g~h~~~v~~~~~s~~~-~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~ 289 (355)
T 3vu4_A 212 TCSQDGTIIRVFKTEDGVL-VREFRRGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYF 289 (355)
T ss_dssp EEETTCSEEEEEETTTCCE-EEEEECTTCCSCEEEEEECTTS-CEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCC
T ss_pred EEeCCCCEEEEEECCCCcE-EEEEEcCCCCCcEEEEEECCCC-CEEEEEECCCEEEEEEccCCCCcccccccceeecccc
Confidence 9999984499999998664 77777 5 99999999999999 699999999999999998754211000000
Q ss_pred ------e---eeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 218 ------I---LAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 218 ------~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
. .......+...++|+++++.+++++.|+.+++|++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~ 334 (355)
T 3vu4_A 290 QSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKV 334 (355)
T ss_dssp CCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred ccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 0 00112233477999999998999999999999974
No 118
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=2.6e-30 Score=205.71 Aligned_cols=241 Identities=15% Similarity=0.142 Sum_probs=157.2
Q ss_pred CCCCceEEeecC-cEEEEEccCCcc------ccceeeeecCCCCccccCCeeEEEec-------------------CCCC
Q 035558 2 CQKPDLLATSSD-FLRVWRISDEDR------RVELKSLLNGNKNSEYCGPLTSFDWN-------------------EAEP 55 (253)
Q Consensus 2 p~~~~~l~~~~~-~v~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~-------------------~~~~ 55 (253)
|..+.+++++.+ .|++|+...... ....+..+. +. .++..+.|+ |+++
T Consensus 28 ~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (393)
T 4gq1_A 28 PSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQ-TG-----LPTLHLSFSSSCSYSENLHDGDGNVNSSPVYS 101 (393)
T ss_dssp GGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEE-CS-----SCEEEEEECTTCEEECC----------CCEEE
T ss_pred CCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEe-cC-----CCeeeEeecCCccccccccCCCcceeecCCCC
Confidence 456678888888 999998754210 011111111 11 233333333 3556
Q ss_pred CEEEEEeCCCeEEEEeccCcee-----eeeeecccccEEEEEec---------CCCeEEEEeCCCcEEEEEcCCCCCeee
Q 035558 56 RRIGTSSIDTTCTIWDIEREAV-----DTQLIAHDKEVYDIAWG---------GVGVFASVSADGSVRVFDLRDKEHSTI 121 (253)
Q Consensus 56 ~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~---------~~~~l~~~~~dg~i~i~d~~~~~~~~~ 121 (253)
.+|++|+.|++|++||.+.++. +..+.+|.+.|++++|+ ++++|++++.|++|++||+++..+...
T Consensus 102 ~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~ 181 (393)
T 4gq1_A 102 LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA 181 (393)
T ss_dssp EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE
T ss_pred CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee
Confidence 7899999999999999988764 33467899999999996 467999999999999999988764333
Q ss_pred eeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCe------------------------eeecccccce
Q 035558 122 IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPV------------------------VELQRHQASV 177 (253)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~------------------------~~~~~~~~~i 177 (253)
.. .+...+.+++|+|.+..+|++++.|+. |++||+++..... ....+|...+
T Consensus 182 ~~---~~~~~v~~v~~~p~~~~~l~~~~~d~~-v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v 257 (393)
T 4gq1_A 182 GY---PLSSPGISVQFRPSNPNQLIVGERNGN-IRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSL 257 (393)
T ss_dssp EE---ECSSCEEEEEEETTEEEEEEEEETTSE-EEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSC
T ss_pred ec---CCCCCcEEEEECCCCCceEEecCCCCE-EEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccc
Confidence 33 445589999999955568999999998 9999998764211 1123577788
Q ss_pred eEEEEe-cCCCCeEEEecCCCcEEEEeccCCCCCCCCC-----------CCCeeeccCCCceeEEEEcC-CCCceE-EEE
Q 035558 178 NAIAWA-PHSSCHICTAGDDSQALIWDLSSMGQPVEGG-----------LDPILAYTAGAEIEQLQWSS-SQPDWV-AIA 243 (253)
Q Consensus 178 ~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~-~~~~~~-~~~ 243 (253)
.++.|. |++ ..|++++.|+++++||+.......... .................|+| .+..++ +++
T Consensus 258 ~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs 336 (393)
T 4gq1_A 258 ANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHS 336 (393)
T ss_dssp SEEEEETTTT-CEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEET
T ss_pred eeeeeecCCC-CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEEC
Confidence 999987 677 699999999999999998765322000 00001111112222333444 333344 566
Q ss_pred cCCcEEEEEC
Q 035558 244 FSTKLQILRV 253 (253)
Q Consensus 244 ~~~~i~vw~l 253 (253)
.|+.|++|++
T Consensus 337 ~Dg~V~lwd~ 346 (393)
T 4gq1_A 337 QHGLIQLINT 346 (393)
T ss_dssp TTTEEEEEET
T ss_pred CCCEEEEEEC
Confidence 7999999985
No 119
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=2e-29 Score=192.09 Aligned_cols=186 Identities=13% Similarity=0.149 Sum_probs=142.1
Q ss_pred CCceEEeec---C-cEEEEEccC-CccccceeeeecCCCCccccCCeeEEEecC--CCCCEEEEEeCCCeEEEEeccCce
Q 035558 4 KPDLLATSS---D-FLRVWRISD-EDRRVELKSLLNGNKNSEYCGPLTSFDWNE--AEPRRIGTSSIDTTCTIWDIEREA 76 (253)
Q Consensus 4 ~~~~l~~~~---~-~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~ 76 (253)
+++++.+++ + .|++|++.. + +.+..+.+|. ..+..++|+| -++.+|++|+.|++|+|||+++++
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~dG----~~~~s~~~~~-----~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk 214 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAEDG----GGKENQFLMP-----PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ 214 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTTS----CEEEEEEECC-----CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC
T ss_pred CCcEEEecccCCCCcEEEEEECCCC----ceeeeeccCC-----CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc
Confidence 566777754 5 999999944 4 6677777888 7788888883 167999999999999999999999
Q ss_pred eeeeeeccc---ccEEEEEec-CCCeE------------EEEeCCCcEEEEEcCCCCCeeeeec--cCCCCCCeeEEEee
Q 035558 77 VDTQLIAHD---KEVYDIAWG-GVGVF------------ASVSADGSVRVFDLRDKEHSTIIYE--SSEPDTPLVRLGWN 138 (253)
Q Consensus 77 ~~~~~~~~~---~~v~~~~~~-~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~i~~~~~~ 138 (253)
+++++.+|. ..+.+++|+ ++.++ ++|+.|++|++||..+++....+.. ..++...+.+..+
T Consensus 215 ~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~- 293 (356)
T 2w18_A 215 LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV- 293 (356)
T ss_dssp EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE-
T ss_pred EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc-
Confidence 999998654 357777899 88776 6688999999999998875443321 2344434433333
Q ss_pred CCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccccccee-EEEEecCCCCeEEEecCCCcEEEEec
Q 035558 139 KQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVN-AIAWAPHSSCHICTAGDDSQALIWDL 204 (253)
Q Consensus 139 ~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~dg~i~iwd~ 204 (253)
++.++++++.|+. |++||+++++ .+.++.+|...+. +++|+|++ ++|++|+.|++|+|||+
T Consensus 294 --sg~~lASgS~DgT-IkIWDl~tGk-~l~tL~gH~~~vvs~vafSPDG-~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 294 --KDHCAAAILTSGT-IAIWDLLLGQ-CTALLPPVSDQHWSFVKWSGTD-SHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp --ETTEEEEEETTSC-EEEEETTTCS-EEEEECCC--CCCCEEEECSSS-SEEEEECTTSCEEEEEE
T ss_pred --CCCEEEEEcCCCc-EEEEECCCCc-EEEEecCCCCCeEEEEEECCCC-CEEEEEECCCcEEEecC
Confidence 3678999999998 9999999876 4888988887655 68999999 69999999999999996
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.3e-28 Score=197.94 Aligned_cols=226 Identities=9% Similarity=-0.019 Sum_probs=180.0
Q ss_pred CCCCCceEEeecC--cEEEEEccCCccccceee-----eecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEecc
Q 035558 1 ECQKPDLLATSSD--FLRVWRISDEDRRVELKS-----LLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE 73 (253)
Q Consensus 1 sp~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 73 (253)
+| ++.+++++++ .|++||+.++ +... .+.+|. ..|.+++|+ +++.++++++.|+.|++||++
T Consensus 131 s~-~~~~~~~~~~~~~i~~~d~~~g----~~~~~~~~~~~~~~~-----~~v~~~~~~-~~~~~~~s~~~d~~v~~~d~~ 199 (433)
T 3bws_A 131 ID-NTRLAIPLLEDEGMDVLDINSG----QTVRLSPPEKYKKKL-----GFVETISIP-EHNELWVSQMQANAVHVFDLK 199 (433)
T ss_dssp SS-SSEEEEEBTTSSSEEEEETTTC----CEEEECCCHHHHTTC-----CEEEEEEEG-GGTEEEEEEGGGTEEEEEETT
T ss_pred eC-CCeEEEEeCCCCeEEEEECCCC----eEeeecCcccccccC-----CceeEEEEc-CCCEEEEEECCCCEEEEEECC
Confidence 35 6777887774 8999999886 4444 455676 789999998 889999999999999999999
Q ss_pred CceeeeeeecccccEEEEEec-CCCeEE-EEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe-
Q 035558 74 REAVDTQLIAHDKEVYDIAWG-GVGVFA-SVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM- 150 (253)
Q Consensus 74 ~~~~~~~~~~~~~~v~~~~~~-~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~- 150 (253)
+++.+..+..|...+.+++|+ +++.++ +++.|+.|++||+++++....+ .. ...+.+++|+| +++.+++++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~---~~-~~~~~~~~~~~-~g~~l~~~~~~ 274 (433)
T 3bws_A 200 TLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKT---DK-IGLPRGLLLSK-DGKELYIAQFS 274 (433)
T ss_dssp TCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEC---CC-CSEEEEEEECT-TSSEEEEEEEE
T ss_pred CceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEe---cC-CCCceEEEEcC-CCCEEEEEECC
Confidence 999888888899999999999 887774 5558999999999987633222 22 33689999999 8888888874
Q ss_pred -------CCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC
Q 035558 151 -------DSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA 223 (253)
Q Consensus 151 -------~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 223 (253)
++. |++||+++.+ ......|...+.+++|+|++..++++++.|+.|++||+.+++.. ....+
T Consensus 275 ~~~~~~~dg~-i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~--------~~~~~ 343 (433)
T 3bws_A 275 ASNQESGGGR-LGIYSMDKEK--LIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ--------KSIPV 343 (433)
T ss_dssp SCTTCSCCEE-EEEEETTTTE--EEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE--------EEEEC
T ss_pred CCccccCCCe-EEEEECCCCc--EEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE--------EEecC
Confidence 555 9999998754 23334566789999999999546677899999999999875422 33457
Q ss_pred CCceeEEEEcCCCCceEEEEc---------------CCcEEEEEC
Q 035558 224 GAEIEQLQWSSSQPDWVAIAF---------------STKLQILRV 253 (253)
Q Consensus 224 ~~~v~~~~~~~~~~~~~~~~~---------------~~~i~vw~l 253 (253)
...+.+++|+|+++.+++++. |+.|++|++
T Consensus 344 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~ 388 (433)
T 3bws_A 344 FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT 388 (433)
T ss_dssp SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEET
T ss_pred CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEEC
Confidence 788999999999987777766 468999985
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=9e-28 Score=190.68 Aligned_cols=220 Identities=11% Similarity=0.066 Sum_probs=173.1
Q ss_pred ceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEE-EEEeCCCeEEEEeccCceeeeeee
Q 035558 6 DLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRI-GTSSIDTTCTIWDIEREAVDTQLI 82 (253)
Q Consensus 6 ~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~ 82 (253)
.++++++ + .|++||+.++ +....+..|. .+.+++|+ ++++++ ++++.|+.|++||+.+++.+..+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~----~~~~~~~~~~------~~~~~~~s-~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~ 71 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN----KVTATIPVGS------NPMGAVIS-PDGTKVYVANAHSNDVSIIDTATNNVIATVP 71 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT----EEEEEEECSS------SEEEEEEC-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCC----eEEEEeecCC------CcceEEEC-CCCCEEEEECCCCCeEEEEECCCCeEEEEEE
Confidence 4667766 4 9999999987 7777887775 58999999 788766 677789999999999999888887
Q ss_pred cccccEEEEEec-CCCeEE-EEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEE-EEEEeCCCeEEEEE
Q 035558 83 AHDKEVYDIAWG-GVGVFA-SVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYM-ATIIMDSAKVVVLD 159 (253)
Q Consensus 83 ~~~~~v~~~~~~-~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~~~~~i~~~d 159 (253)
.+. .+.+++|+ +++.++ +++.++.|++||+.+++....+. . ...+.+++|+| +++.+ ++++.++. |++||
T Consensus 72 ~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~---~-~~~~~~~~~s~-dg~~l~~~~~~~~~-v~~~d 144 (391)
T 1l0q_A 72 AGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK---T-GKSPLGLALSP-DGKKLYVTNNGDKT-VSVIN 144 (391)
T ss_dssp CSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---C-SSSEEEEEECT-TSSEEEEEETTTTE-EEEEE
T ss_pred CCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe---C-CCCcceEEECC-CCCEEEEEeCCCCE-EEEEE
Confidence 554 89999999 888765 55567999999999887444332 2 23789999999 77777 56555666 99999
Q ss_pred CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558 160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW 239 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 239 (253)
+++.+. +..+..+ ..+.+++|+|++..++++++.|+.|++||+++... .....+...+.+++|+|+++.+
T Consensus 145 ~~~~~~-~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~--------~~~~~~~~~~~~~~~~~~g~~l 214 (391)
T 1l0q_A 145 TVTKAV-INTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV--------IDTVKVEAAPSGIAVNPEGTKA 214 (391)
T ss_dssp TTTTEE-EEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE--------EEEEECSSEEEEEEECTTSSEE
T ss_pred CCCCcE-EEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE--------EEEEecCCCccceEECCCCCEE
Confidence 987653 5555544 45699999999953347888999999999988653 2334467789999999999988
Q ss_pred EEEE---cCCcEEEEEC
Q 035558 240 VAIA---FSTKLQILRV 253 (253)
Q Consensus 240 ~~~~---~~~~i~vw~l 253 (253)
++++ .++.+++|++
T Consensus 215 ~~~~~~~~~~~v~~~d~ 231 (391)
T 1l0q_A 215 YVTNVDKYFNTVSMIDT 231 (391)
T ss_dssp EEEEECSSCCEEEEEET
T ss_pred EEEecCcCCCcEEEEEC
Confidence 8777 6899999985
No 122
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=1.6e-27 Score=191.18 Aligned_cols=196 Identities=16% Similarity=0.326 Sum_probs=164.4
Q ss_pred CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee--cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCee
Q 035558 44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI--AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHST 120 (253)
Q Consensus 44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~ 120 (253)
.++.|+|+ + .+.|++|. |++|+|||..+++....+. +|...|++|+|+ ++++|++|+.||.|++||+++++.
T Consensus 107 y~~~l~wS-~-~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~-- 181 (420)
T 4gga_A 107 YLNLVDWS-S-GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-- 181 (420)
T ss_dssp TCBCEEEC-T-TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--
T ss_pred cceeEEEC-C-CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE--
Confidence 45679998 4 45777765 8999999999998777665 677889999999 999999999999999999998874
Q ss_pred eeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEE
Q 035558 121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQAL 200 (253)
Q Consensus 121 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 200 (253)
+.....|...+.+++++ +.++++++.++. +++||.+.....+..+.+|...+..+.|+|++ .++++++.|+.++
T Consensus 182 -~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~-i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~ 255 (420)
T 4gga_A 182 -LRNMTSHSARVGSLSWN---SYILSSGSRSGH-IHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVN 255 (420)
T ss_dssp -EEEECCCSSCEEEEEEE---TTEEEEEETTSE-EEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEE
T ss_pred -EEEEeCCCCceEEEeeC---CCEEEEEeCCCc-eeEeeecccceeeEEecccccceeeeeecCCC-Ceeeeeeccccce
Confidence 34445677788888875 578999999998 99999998777778899999999999999999 6999999999999
Q ss_pred EEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE---EcCCcEEEEEC
Q 035558 201 IWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI---AFSTKLQILRV 253 (253)
Q Consensus 201 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~i~vw~l 253 (253)
+|+...++... ........|...|.+++|+|.+..+++. +.|+.|++|++
T Consensus 256 i~~~~~~~~~~---~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~ 308 (420)
T 4gga_A 256 VWPSAPGEGGW---VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308 (420)
T ss_dssp EEESSCCSSCS---CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEET
T ss_pred EEeeccccccc---eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeC
Confidence 99998876432 2234667899999999999998877743 36899999985
No 123
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.9e-28 Score=194.72 Aligned_cols=223 Identities=13% Similarity=0.131 Sum_probs=163.0
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee---
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV--- 77 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--- 77 (253)
++|.+||+++ + .|++|+... +...+. |........|.+++|| |++++|++|+.||+|++||+.++..
T Consensus 95 PdG~~LAs~s~dg~V~iwd~~~------~l~~l~-~~~~~~~~sv~svafS-PDG~~LAsgs~DGtVkIWd~~~~~l~~~ 166 (588)
T 2j04_A 95 PIDDWMAVLSNNGNVSVFKDNK------MLTNLD-SKGNLSSRTYHCFEWN-PIESSIVVGNEDGELQFFSIRKNSENTP 166 (588)
T ss_dssp SSSSCEEEEETTSCEEEEETTE------EEEECC-CSSCSTTTCEEEEEEC-SSSSCEEEEETTSEEEEEECCCCTTTCC
T ss_pred CCCCEEEEEeCCCcEEEEeCCc------eeeecc-CCCccccccEEEEEEc-CCCCEEEEEcCCCEEEEEECCCCccccc
Confidence 3667777776 5 999999532 555566 6522112369999999 8999999999999999999998752
Q ss_pred ----eeee----ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeecc-CCCCCCeeEEEeeCCCCCEEEE
Q 035558 78 ----DTQL----IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYES-SEPDTPLVRLGWNKQDPRYMAT 147 (253)
Q Consensus 78 ----~~~~----~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~ 147 (253)
+.++ .+|...|.+++|+ ++ +++++.|++|++||+.++......... ..|...|.+++|+ ++.+|+
T Consensus 167 ~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs---g~~LAS 241 (588)
T 2j04_A 167 EFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV---DYKVVL 241 (588)
T ss_dssp CCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE---TTEEEE
T ss_pred cceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE---CCEEEE
Confidence 4565 5677899999999 77 889999999999999887632111111 2455689999998 478888
Q ss_pred EEeCCCeEEEEECCCCCCCeeeecccccceeEEEE--ecCCCCeEEEecCCCcEEEEeccCCC-----CCC---------
Q 035558 148 IIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAW--APHSSCHICTAGDDSQALIWDLSSMG-----QPV--------- 211 (253)
Q Consensus 148 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~--------- 211 (253)
++ ++. |++||+..... .....+|...+..++| +|++ ..|+++++||+ ++|...... ...
T Consensus 242 a~-~~t-IkLWd~~~~~~-~~~~~gh~~~V~~va~~~s~d~-~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~l 316 (588)
T 2j04_A 242 TC-PGY-VHKIDLKNYSI-SSLKTGSLENFHIIPLNHEKES-TILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKK 316 (588)
T ss_dssp EC-SSE-EEEEETTTTEE-EEEECSCCSCCCEEEETTCSSC-EEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHH
T ss_pred Ee-CCe-EEEEECCCCeE-EEEEcCCCceEEEEEeeeCCCC-CEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEE
Confidence 87 566 99999987553 2333379999999999 9999 69999999999 999874211 000
Q ss_pred -CCCCCCeeeccCCCceeEEEEcCCCCceEEEE
Q 035558 212 -EGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA 243 (253)
Q Consensus 212 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 243 (253)
.....+.....+...|++++|+|+|+.+++++
T Consensus 317 W~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 317 WSTIWNEFNNYETTLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp TTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEE
T ss_pred EECCCCceeeeccceEEEEEEECCCCCEEEEEE
Confidence 00011122333466799999999998555443
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=6.8e-27 Score=185.60 Aligned_cols=223 Identities=9% Similarity=0.100 Sum_probs=169.5
Q ss_pred CCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEE-EEeCCCeEEEEeccCceee
Q 035558 2 CQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIG-TSSIDTTCTIWDIEREAVD 78 (253)
Q Consensus 2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~ 78 (253)
|+...++++++ + .|++||+.++ +....+..+ ..+.+++|+ +++++|+ +++.++.|++||+.+++.+
T Consensus 41 ~dg~~l~~~~~~d~~i~v~d~~~~----~~~~~~~~~------~~v~~~~~s-pdg~~l~~~~~~~~~v~v~d~~~~~~~ 109 (391)
T 1l0q_A 41 PDGTKVYVANAHSNDVSIIDTATN----NVIATVPAG------SSPQGVAVS-PDGKQVYVTNMASSTLSVIDTTSNTVA 109 (391)
T ss_dssp TTSSEEEEEEGGGTEEEEEETTTT----EEEEEEECS------SSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCCEEEEECCCCCeEEEEECCCC----eEEEEEECC------CCccceEEC-CCCCEEEEEECCCCEEEEEECCCCeEE
Confidence 44444556664 5 9999999887 677777665 378999999 7888765 5556799999999999888
Q ss_pred eeeecccccEEEEEec-CCCeE-EEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEE-EEEeCCCeE
Q 035558 79 TQLIAHDKEVYDIAWG-GVGVF-ASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMA-TIIMDSAKV 155 (253)
Q Consensus 79 ~~~~~~~~~v~~~~~~-~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~~~~~i 155 (253)
..+.. ...+.+++|+ +++.+ ++++.|+.|++||+++++....+.. + ..+..++|+| +++.++ +++.++. |
T Consensus 110 ~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~-~~~~~~~~~~-dg~~l~~~~~~~~~-v 182 (391)
T 1l0q_A 110 GTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV---G-RSPKGIAVTP-DGTKVYVANFDSMS-I 182 (391)
T ss_dssp EEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---C-SSEEEEEECT-TSSEEEEEETTTTE-E
T ss_pred EEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec---C-CCcceEEECC-CCCEEEEEeCCCCE-E
Confidence 77774 4568999999 88866 7888899999999998864443322 2 3679999999 777774 5555565 9
Q ss_pred EEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEec---CCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEE
Q 035558 156 VVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAG---DDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQW 232 (253)
Q Consensus 156 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 232 (253)
++||+++... +..+. +...+.+++|+|++ ++|++++ .++.|++||+++++... .... ...+.+++|
T Consensus 183 ~~~d~~~~~~-~~~~~-~~~~~~~~~~~~~g-~~l~~~~~~~~~~~v~~~d~~~~~~~~-------~~~~-~~~~~~~~~ 251 (391)
T 1l0q_A 183 SVIDTVTNSV-IDTVK-VEAAPSGIAVNPEG-TKAYVTNVDKYFNTVSMIDTGTNKITA-------RIPV-GPDPAGIAV 251 (391)
T ss_dssp EEEETTTTEE-EEEEE-CSSEEEEEEECTTS-SEEEEEEECSSCCEEEEEETTTTEEEE-------EEEC-CSSEEEEEE
T ss_pred EEEECCCCeE-EEEEe-cCCCccceEECCCC-CEEEEEecCcCCCcEEEEECCCCeEEE-------EEec-CCCccEEEE
Confidence 9999987642 44443 56688999999999 5777776 69999999998765322 3333 345789999
Q ss_pred cCCCCceE-EEEcCCcEEEEEC
Q 035558 233 SSSQPDWV-AIAFSTKLQILRV 253 (253)
Q Consensus 233 ~~~~~~~~-~~~~~~~i~vw~l 253 (253)
+|+++.++ +++.++.+++|++
T Consensus 252 s~dg~~l~~s~~~d~~v~v~d~ 273 (391)
T 1l0q_A 252 TPDGKKVYVALSFXNTVSVIDT 273 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEET
T ss_pred ccCCCEEEEEcCCCCEEEEEEC
Confidence 99998774 5678999999985
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=2.2e-27 Score=190.82 Aligned_cols=223 Identities=10% Similarity=0.081 Sum_probs=174.9
Q ss_pred CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEE-EEEeCCCeEEEEeccCceeee
Q 035558 3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRI-GTSSIDTTCTIWDIEREAVDT 79 (253)
Q Consensus 3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~ 79 (253)
+++.++++++. .|++||+.++ +....+..|. ..+.+++|+ ++++.+ ++++.|+.|++||+++++.+.
T Consensus 179 ~~~~~~~s~~~d~~v~~~d~~~~----~~~~~~~~~~-----~~~~~~~~~-~~~~~l~~~~~~~~~i~~~d~~~~~~~~ 248 (433)
T 3bws_A 179 EHNELWVSQMQANAVHVFDLKTL----AYKATVDLTG-----KWSKILLYD-PIRDLVYCSNWISEDISVIDRKTKLEIR 248 (433)
T ss_dssp GGTEEEEEEGGGTEEEEEETTTC----CEEEEEECSS-----SSEEEEEEE-TTTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCEEEEEECCCCEEEEEECCCc----eEEEEEcCCC-----CCeeEEEEc-CCCCEEEEEecCCCcEEEEECCCCcEEE
Confidence 46778888874 9999999887 7777788887 789999999 777776 455589999999999998887
Q ss_pred eeecccccEEEEEec-CCCeEEEEe--------CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEE-EEEE
Q 035558 80 QLIAHDKEVYDIAWG-GVGVFASVS--------ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYM-ATII 149 (253)
Q Consensus 80 ~~~~~~~~v~~~~~~-~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~ 149 (253)
.+.. ...+.+++|+ +++.+++++ .||.|++||+++++....+ .+...+.+++|+| +++.+ ++++
T Consensus 249 ~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~----~~~~~~~~~~~~~-~g~~l~~~~~ 322 (433)
T 3bws_A 249 KTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI----GPPGNKRHIVSGN-TENKIYVSDM 322 (433)
T ss_dssp ECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE----EEEECEEEEEECS-STTEEEEEET
T ss_pred EecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec----cCCCCcceEEECC-CCCEEEEEec
Confidence 7765 4568999999 898888888 5889999999987643333 2223788999999 77655 5556
Q ss_pred eCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecC---------------CCcEEEEeccCCCCCCCCC
Q 035558 150 MDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGD---------------DSQALIWDLSSMGQPVEGG 214 (253)
Q Consensus 150 ~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~ 214 (253)
.++. |++||+++.+. +..+. +...+.+++|+|++ ++|++++. ||.|++||+.+++..
T Consensus 323 ~~~~-v~v~d~~~~~~-~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~---- 394 (433)
T 3bws_A 323 CCSK-IEVYDLKEKKV-QKSIP-VFDKPNTIALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK---- 394 (433)
T ss_dssp TTTE-EEEEETTTTEE-EEEEE-CSSSEEEEEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE----
T ss_pred CCCE-EEEEECCCCcE-EEEec-CCCCCCeEEEcCCC-CEEEEEecCCCccccccccccccceEEEEEECCCCcEE----
Confidence 6666 99999987542 44444 67789999999999 57777765 579999999886532
Q ss_pred CCCeeeccCCCceeEEEEcCCCCceEEEEc-CCcEEEEEC
Q 035558 215 LDPILAYTAGAEIEQLQWSSSQPDWVAIAF-STKLQILRV 253 (253)
Q Consensus 215 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~i~vw~l 253 (253)
....+...+.+++|+|+++.+++++. ++.+++|++
T Consensus 395 ----~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~ 430 (433)
T 3bws_A 395 ----EFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRR 430 (433)
T ss_dssp ----EEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred ----EEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEe
Confidence 22334567999999999998887775 999999985
No 126
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=6e-27 Score=180.65 Aligned_cols=196 Identities=15% Similarity=0.311 Sum_probs=160.7
Q ss_pred CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee--cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCee
Q 035558 44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI--AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHST 120 (253)
Q Consensus 44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~ 120 (253)
..++|+|+ ++ ++|++| .|++|+|||+++++.++.+. +|...|++++|+ ++++|++|+.||+|++||+++++...
T Consensus 27 y~~~l~WS-~~-~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~ 103 (318)
T 4ggc_A 27 YLNLVDWS-SG-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103 (318)
T ss_dssp TCBCEEEC-TT-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred cceEEEEC-CC-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE
Confidence 35789999 55 477766 48999999999999887665 677889999999 99999999999999999999987443
Q ss_pred eeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEE
Q 035558 121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQAL 200 (253)
Q Consensus 121 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 200 (253)
. ...|...+.++.+ ++..+++++.++. +++|+.......+..+.+|...+..+.+.+++ .+|++++.||.|+
T Consensus 104 ~---~~~h~~~~~~~~~---~~~~l~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~ 175 (318)
T 4ggc_A 104 N---MTSHSARVGSLSW---NSYILSSGSRSGH-IHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVN 175 (318)
T ss_dssp E---EECCSSCEEEEEE---ETTEEEEEETTSE-EEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEE
T ss_pred E---ecCccceEEEeec---CCCEEEEEecCCc-eEeeecCCCceeEEEEcCccCceEEEEEcCCC-CEEEEEecCccee
Confidence 3 3456556666655 5578999999888 99999988777778889999999999999999 6999999999999
Q ss_pred EEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE---EEEcCCcEEEEEC
Q 035558 201 IWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV---AIAFSTKLQILRV 253 (253)
Q Consensus 201 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~i~vw~l 253 (253)
+||+++++... ........+...|..++++|.+..++ +++.++.+++|+.
T Consensus 176 iwd~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~ 228 (318)
T 4ggc_A 176 VWPSAPGEGGW---VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 228 (318)
T ss_dssp EEESSCBTTBS---CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEET
T ss_pred EEECCCCcccc---cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEec
Confidence 99998876433 22345667888999999999988766 3456788999974
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=2.7e-25 Score=177.90 Aligned_cols=211 Identities=14% Similarity=0.133 Sum_probs=165.1
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCC---eEEEEeccCceeeeeeecccccEEE
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT---TCTIWDIEREAVDTQLIAHDKEVYD 90 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~ 90 (253)
.|++||++. .....+.+|. ..+.+++|+ |+++.|++++.++ .|++||+++++.. .+..|...+.+
T Consensus 160 ~i~i~d~~g-----~~~~~l~~~~-----~~v~~~~~S-pdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~ 227 (415)
T 2hqs_A 160 ELRVSDYDG-----YNQFVVHRSP-----QPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGA 227 (415)
T ss_dssp EEEEEETTS-----CSCEEEEEES-----SCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEE
T ss_pred eEEEEcCCC-----CCCEEEeCCC-----CcceeeEEc-CCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccC
Confidence 799999986 4456777787 889999999 8999999999875 9999999988765 46678889999
Q ss_pred EEec-CCCeEE-EEeCCCc--EEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC--eEEEEECCCCC
Q 035558 91 IAWG-GVGVFA-SVSADGS--VRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA--KVVVLDIRFPT 164 (253)
Q Consensus 91 ~~~~-~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~--~i~~~d~~~~~ 164 (253)
++|+ +++.|+ +++.++. |++||+++++. .....+...+.+++|+| +++.|++++.+++ .|++||+.+..
T Consensus 228 ~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~ 302 (415)
T 2hqs_A 228 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQI----RQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGA 302 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTTCCE----EECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred EEEcCCCCEEEEEEecCCCceEEEEECCCCCE----EeCcCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCC
Confidence 9999 998777 6666655 99999988763 22234556899999999 8998888876432 37778887654
Q ss_pred CCeeeecccccceeEEEEecCCCCeEEEecCC---CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558 165 LPVVELQRHQASVNAIAWAPHSSCHICTAGDD---SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA 241 (253)
Q Consensus 165 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 241 (253)
...+..+...+.+++|+|+| ++|++++.+ ..|++||+.+++. ..+..+. .+.+++|+|+++.++.
T Consensus 303 --~~~l~~~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~~~~--------~~l~~~~-~~~~~~~spdg~~l~~ 370 (415)
T 2hqs_A 303 --PQRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGV--------QVLSSTF-LDETPSLAPNGTMVIY 370 (415)
T ss_dssp --CEECCCSSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCCE--------EECCCSS-SCEEEEECTTSSEEEE
T ss_pred --EEEEecCCCcccCeEECCCC-CEEEEEECcCCceEEEEEECCCCCE--------EEecCCC-CcCCeEEcCCCCEEEE
Confidence 45555677789999999999 578777654 5899999987653 1333343 8999999999998887
Q ss_pred EEcCC---cEEEEEC
Q 035558 242 IAFST---KLQILRV 253 (253)
Q Consensus 242 ~~~~~---~i~vw~l 253 (253)
++.++ .|.+|++
T Consensus 371 ~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 371 SSSQGMGSVLNLVST 385 (415)
T ss_dssp EEEETTEEEEEEEET
T ss_pred EEcCCCccEEEEEEC
Confidence 77766 6888874
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=2.5e-24 Score=172.36 Aligned_cols=225 Identities=11% Similarity=0.080 Sum_probs=166.7
Q ss_pred CCCceEEeec------C----cEEEEEc--cCCcccccee--eeecCCCCccccCCeeEEEecCC-------------CC
Q 035558 3 QKPDLLATSS------D----FLRVWRI--SDEDRRVELK--SLLNGNKNSEYCGPLTSFDWNEA-------------EP 55 (253)
Q Consensus 3 ~~~~~l~~~~------~----~v~iw~~--~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~-------------~~ 55 (253)
.+.+++++|+ + .+++||+ .++ +.+ ..+.+|. ..+..+++++. .+
T Consensus 73 ~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~----~~~~~~~~~~~~-----~~~~~~~~~~~d~~~~~~~g~~~~~~ 143 (415)
T 2hqs_A 73 LGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPG----TVLAQNSYKVNK-----QWLRYAGHTASDEVFEKLTGIKGAFR 143 (415)
T ss_dssp TTCCEEEEEEEEECTTSCEEEEEEEEECSSSTT----CEEEEEEEEECG-----GGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred cCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCC----CEEeeeEEEcCh-----hHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence 3456676653 2 6999999 775 444 5578887 66777776621 15
Q ss_pred CEEEEEeCC------CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCC---cEEEEEcCCCCCeeeeecc
Q 035558 56 RRIGTSSID------TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADG---SVRVFDLRDKEHSTIIYES 125 (253)
Q Consensus 56 ~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~ 125 (253)
..++.++.+ +.|++||+.. .....+..|...+.+++|+ +++.|++++.++ .|++||+++++... +
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l--- 218 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-V--- 218 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-E---
T ss_pred CEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-e---
Confidence 566666554 7999999974 4566777899999999999 999999999885 99999999887432 2
Q ss_pred CCCCCCeeEEEeeCCCCCEEE-EEEeCC-CeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecC-CC--cEE
Q 035558 126 SEPDTPLVRLGWNKQDPRYMA-TIIMDS-AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGD-DS--QAL 200 (253)
Q Consensus 126 ~~~~~~i~~~~~~~~~~~~l~-~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~i~ 200 (253)
..+...+.+++|+| +++.|+ +++.++ ..|++||+++.. ...+..|...+.+++|+|++ ++|++++. ++ .|.
T Consensus 219 ~~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~ 294 (415)
T 2hqs_A 219 ASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVY 294 (415)
T ss_dssp ECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCC--EEECCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEE
T ss_pred ecCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCC--EEeCcCCCCcccceEECCCC-CEEEEEECCCCCcEEE
Confidence 23445899999999 888777 444443 249999998754 56777788899999999999 57777665 55 566
Q ss_pred EEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcC---CcEEEEEC
Q 035558 201 IWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFS---TKLQILRV 253 (253)
Q Consensus 201 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~vw~l 253 (253)
+||+.++.. .....+...+.+++|+|++++++.++.+ ..|.+|++
T Consensus 295 ~~d~~~~~~--------~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~ 342 (415)
T 2hqs_A 295 KVNINGGAP--------QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 342 (415)
T ss_dssp EEETTSSCC--------EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred EEECCCCCE--------EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence 778776542 2444567789999999999988776654 47888874
No 129
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=6.6e-24 Score=161.59 Aligned_cols=214 Identities=12% Similarity=0.163 Sum_probs=159.0
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC-ceeeeeeecc-cccEEEE
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER-EAVDTQLIAH-DKEVYDI 91 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~-~~~v~~~ 91 (253)
.|++||+.++ +.. .+..|. ..|.+++|+ |++++|++++ ++.|++||+.+ ++.......+ ...+.++
T Consensus 23 ~i~~~d~~~~----~~~-~~~~~~-----~~v~~~~~s-pdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 90 (297)
T 2ojh_A 23 SIEIFNIRTR----KMR-VVWQTP-----ELFEAPNWS-PDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDH 90 (297)
T ss_dssp EEEEEETTTT----EEE-EEEEES-----SCCEEEEEC-TTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCC
T ss_pred eEEEEeCCCC----cee-eeccCC-----cceEeeEEC-CCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccce
Confidence 8999999885 333 445566 789999999 8999999887 78999999998 7766666555 3678999
Q ss_pred Eec-CCCeEEEEe--CCCcEEEEEc--CCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEE-EEEeCCCeEEEEECCCCCC
Q 035558 92 AWG-GVGVFASVS--ADGSVRVFDL--RDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMA-TIIMDSAKVVVLDIRFPTL 165 (253)
Q Consensus 92 ~~~-~~~~l~~~~--~dg~i~i~d~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~~~~~i~~~d~~~~~~ 165 (253)
+|+ +++.|++++ .++...+|.+ .++.. ..+ ... ..+..++|+| +++.++ +++.++. +.+|++.....
T Consensus 91 ~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~---~~~-~~~~~~~~sp-dg~~l~~~~~~~~~-~~l~~~~~~~~ 163 (297)
T 2ojh_A 91 GISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLM---TKN-LPSYWHGWSP-DGKSFTYCGIRDQV-FDIYSMDIDSG 163 (297)
T ss_dssp EECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EEC---CSS-SSEEEEEECT-TSSEEEEEEEETTE-EEEEEEETTTC
T ss_pred EECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEe---ecC-CCccceEECC-CCCEEEEEECCCCc-eEEEEEECCCC
Confidence 999 999999998 3455556555 44431 111 122 2588899999 787776 6667776 99998754443
Q ss_pred CeeeecccccceeEEEEecCCCCeEEEe-cCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEc
Q 035558 166 PVVELQRHQASVNAIAWAPHSSCHICTA-GDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAF 244 (253)
Q Consensus 166 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 244 (253)
....+..+...+.+++|+|++ ++|+.+ ..++.+++|++....... ..+..|...+..++|+|+++++++++.
T Consensus 164 ~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~s~dg~~l~~~~~ 236 (297)
T 2ojh_A 164 VETRLTHGEGRNDGPDYSPDG-RWIYFNSSRTGQMQIWRVRVDGSSV------ERITDSAYGDWFPHPSPSGDKVVFVSY 236 (297)
T ss_dssp CEEECCCSSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCE------EECCCCSEEEEEEEECTTSSEEEEEEE
T ss_pred cceEcccCCCccccceECCCC-CEEEEEecCCCCccEEEECCCCCCc------EEEecCCcccCCeEECCCCCEEEEEEc
Confidence 466777788899999999999 466654 469999999987433222 355567788999999999998887766
Q ss_pred C-----------CcEEEEEC
Q 035558 245 S-----------TKLQILRV 253 (253)
Q Consensus 245 ~-----------~~i~vw~l 253 (253)
+ ..+.+|++
T Consensus 237 ~~~~~~~~~~~~~~l~~~d~ 256 (297)
T 2ojh_A 237 DADVFDHPRDLDVRVQLMDM 256 (297)
T ss_dssp ETTCCSCCSSEEEEEEEEET
T ss_pred CCCCCcccccCceEEEEEec
Confidence 5 45888874
No 130
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.93 E-value=3.7e-25 Score=177.88 Aligned_cols=205 Identities=10% Similarity=0.139 Sum_probs=148.0
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee----------ee-----eeecccccEEEEEec-CCCeEE----EE
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV----------DT-----QLIAHDKEVYDIAWG-GVGVFA----SV 102 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----------~~-----~~~~~~~~v~~~~~~-~~~~l~----~~ 102 (253)
..+..++++ +++.++++++.++ +++|+...... .. ....+...|.+++|+ ++++|+ ++
T Consensus 37 ~~~n~lavs-~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 37 ERSSLLAVS-NKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp SCCBCEEEE-TTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCccEEEEe-cCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 457889999 7888999998887 88987642110 00 011355679999999 999999 78
Q ss_pred eCCCcEEEEEcCCC--------CCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccc
Q 035558 103 SADGSVRVFDLRDK--------EHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQ 174 (253)
Q Consensus 103 ~~dg~i~i~d~~~~--------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 174 (253)
+.|+.|++||+++. +....+.....|...|.+++|+|.++.+|++++.|+. |++||+++... +.....|.
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~-v~iwD~~~~~~-~~~~~~~~ 192 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS-IAVLQVTETVK-VCATLPST 192 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC-EEEEEESSSEE-EEEEECGG
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe-EEEEEcCCCcc-eeeccCCC
Confidence 89999999999764 2222344445577799999999955899999999999 99999998643 55566788
Q ss_pred cceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE-EcCC------c
Q 035558 175 ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI-AFST------K 247 (253)
Q Consensus 175 ~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~------~ 247 (253)
..|.+++|+|++ ++|++|+.||+|++||++ +...............|...|.+++|++++.++++. ..++ .
T Consensus 193 ~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~ 270 (434)
T 2oit_A 193 VAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPD 270 (434)
T ss_dssp GCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCE
T ss_pred CceeEEEEcCCC-CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCc
Confidence 999999999998 699999999999999998 321110000000111244589999999988655432 3332 2
Q ss_pred EEEEEC
Q 035558 248 LQILRV 253 (253)
Q Consensus 248 i~vw~l 253 (253)
+++|++
T Consensus 271 v~i~~l 276 (434)
T 2oit_A 271 VVMALL 276 (434)
T ss_dssp EEEEEC
T ss_pred eEEEEe
Confidence 778864
No 131
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=8.6e-24 Score=160.94 Aligned_cols=223 Identities=9% Similarity=0.064 Sum_probs=161.2
Q ss_pred CCCceEEeecC-cEEEEEccC-CccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe--CCCeEEEE--eccCce
Q 035558 3 QKPDLLATSSD-FLRVWRISD-EDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS--IDTTCTIW--DIEREA 76 (253)
Q Consensus 3 ~~~~~l~~~~~-~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~vw--d~~~~~ 76 (253)
+++.+|+++++ .|++||+.+ + +.......+.. ..+.+++|+ +++++|++++ .++...+| +..+++
T Consensus 51 pdg~~l~~~~~~~i~~~d~~~~~----~~~~~~~~~~~----~~~~~~~~s-pdg~~l~~~~~~~~~~~~l~~~~~~~~~ 121 (297)
T 2ojh_A 51 PDGKYLLLNSEGLLYRLSLAGDP----SPEKVDTGFAT----ICNNDHGIS-PDGALYAISDKVEFGKSAIYLLPSTGGT 121 (297)
T ss_dssp TTSSEEEEEETTEEEEEESSSCC----SCEECCCTTCC----CBCSCCEEC-TTSSEEEEEECTTTSSCEEEEEETTCCC
T ss_pred CCCCEEEEEcCCeEEEEeCCCCC----CceEecccccc----ccccceEEC-CCCCEEEEEEeCCCCcceEEEEECCCCc
Confidence 45677777777 999999988 6 55555555531 578899999 8999999988 33445555 445444
Q ss_pred eeeeeecccccEEEEEec-CCCeEE-EEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe-CCC
Q 035558 77 VDTQLIAHDKEVYDIAWG-GVGVFA-SVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM-DSA 153 (253)
Q Consensus 77 ~~~~~~~~~~~v~~~~~~-~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-~~~ 153 (253)
...+.. ...+..++|+ +++.++ ++..++.+++|+++..... ......+...+.+++|+| +++.+++++. ++.
T Consensus 122 -~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~ 196 (297)
T 2ojh_A 122 -PRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV--ETRLTHGEGRNDGPDYSP-DGRWIYFNSSRTGQ 196 (297)
T ss_dssp -CEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC--EEECCCSSSCEEEEEECT-TSSEEEEEECTTSS
T ss_pred -eEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc--ceEcccCCCccccceECC-CCCEEEEEecCCCC
Confidence 333433 3358899999 888776 7888999999997543211 122234455899999999 8888877764 666
Q ss_pred eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCC-----------CcEEEEeccCCCCCCCCCCCCeeecc
Q 035558 154 KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDD-----------SQALIWDLSSMGQPVEGGLDPILAYT 222 (253)
Q Consensus 154 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~ 222 (253)
+.+|++.........+..|...+..++|+|++ ++|++++.+ +.|.+||+.+++... .....+
T Consensus 197 -~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-----~~~~~~ 269 (297)
T 2ojh_A 197 -MQIWRVRVDGSSVERITDSAYGDWFPHPSPSG-DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVET-----LFDLFG 269 (297)
T ss_dssp -CEEEEEETTSSCEEECCCCSEEEEEEEECTTS-SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEE-----EEEEEE
T ss_pred -ccEEEECCCCCCcEEEecCCcccCCeEECCCC-CEEEEEEcCCCCCcccccCceEEEEEecCCCCcee-----eeccCC
Confidence 99998874444477788888889999999999 588777765 569999998765322 123346
Q ss_pred CCCceeEEEEcCCCCceEEEEcCC
Q 035558 223 AGAEIEQLQWSSSQPDWVAIAFST 246 (253)
Q Consensus 223 ~~~~v~~~~~~~~~~~~~~~~~~~ 246 (253)
|...+..++|+|+++.+++++.+.
T Consensus 270 ~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 270 GQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp STTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCcccccceECCCCCEEEEEEecc
Confidence 788999999999999888776654
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=1.1e-22 Score=157.75 Aligned_cols=230 Identities=8% Similarity=-0.015 Sum_probs=163.9
Q ss_pred CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC-CCeEEEEeccCcee-e
Q 035558 3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI-DTTCTIWDIEREAV-D 78 (253)
Q Consensus 3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~-~ 78 (253)
..+.++++++. .|++||+.++ +....+..+. ..+ .++|+ ++++++++++. ++.|.+||+++++. .
T Consensus 8 ~~~~~~v~~~~~~~v~~~d~~~~----~~~~~~~~~~-----~~~-~~~~s-~dg~~l~~~~~~~~~i~~~d~~~~~~~~ 76 (331)
T 3u4y_A 8 TSNFGIVVEQHLRRISFFSTDTL----EILNQITLGY-----DFV-DTAIT-SDCSNVVVTSDFCQTLVQIETQLEPPKV 76 (331)
T ss_dssp CCCEEEEEEGGGTEEEEEETTTC----CEEEEEECCC-----CEE-EEEEC-SSSCEEEEEESTTCEEEEEECSSSSCEE
T ss_pred CCCEEEEEecCCCeEEEEeCccc----ceeeeEEccC-----Ccc-eEEEc-CCCCEEEEEeCCCCeEEEEECCCCceeE
Confidence 44555666664 9999999886 6666665554 556 99999 78886665555 88999999999887 6
Q ss_pred eeeecccccEEEEEec-CCCeEEEEeCCC---cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCe
Q 035558 79 TQLIAHDKEVYDIAWG-GVGVFASVSADG---SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAK 154 (253)
Q Consensus 79 ~~~~~~~~~v~~~~~~-~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~ 154 (253)
..+..+..+..+++|+ ++++++++..++ .|.+||+.+++....+.. ......++|+| +++++++++.+...
T Consensus 77 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~sp-dg~~l~~~~~~~~~ 151 (331)
T 3u4y_A 77 VAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI----PYDAVGIAISP-NGNGLILIDRSSAN 151 (331)
T ss_dssp EEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC----CTTEEEEEECT-TSSCEEEEEETTTT
T ss_pred EecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC----CCCccceEECC-CCCEEEEEecCCCc
Confidence 6676666666669999 999888555553 899999998864443322 22568999999 88777777666555
Q ss_pred -EEEEECCCCCCCe---eeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEE
Q 035558 155 -VVVLDIRFPTLPV---VELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQL 230 (253)
Q Consensus 155 -i~~~d~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~ 230 (253)
|.+|++....... .........+..++|+|++..+++++..++.|++||+.+++... ..........+..+
T Consensus 152 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~-----~~~~~~~~~~~~~~ 226 (331)
T 3u4y_A 152 TVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT-----LLNAVGTNNLPGTI 226 (331)
T ss_dssp EEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE-----EEEEEECSSCCCCE
T ss_pred eEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc-----eeeeccCCCCCceE
Confidence 9999998644311 11122345678999999994345566679999999998766411 01223345778899
Q ss_pred EEcCCCCceEEEE-cCCcEEEEEC
Q 035558 231 QWSSSQPDWVAIA-FSTKLQILRV 253 (253)
Q Consensus 231 ~~~~~~~~~~~~~-~~~~i~vw~l 253 (253)
+|+|+++++++++ .++.|.+|++
T Consensus 227 ~~spdg~~l~v~~~~~~~i~~~d~ 250 (331)
T 3u4y_A 227 VVSRDGSTVYVLTESTVDVFNFNQ 250 (331)
T ss_dssp EECTTSSEEEEECSSEEEEEEEET
T ss_pred EECCCCCEEEEEEcCCCEEEEEEC
Confidence 9999998666544 4677888874
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=1.2e-22 Score=158.10 Aligned_cols=234 Identities=12% Similarity=0.107 Sum_probs=152.8
Q ss_pred CCc-eEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe-CCCeEEEEecc---Cce
Q 035558 4 KPD-LLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS-IDTTCTIWDIE---REA 76 (253)
Q Consensus 4 ~~~-~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vwd~~---~~~ 76 (253)
+++ +++++.+ .|++|+++......+.+..+..+ ..+..++|+ ++++++++++ .++.|.+||+. ..+
T Consensus 48 dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~s-~dg~~l~~~~~~~~~i~~~d~~~~~~~~ 120 (343)
T 1ri6_A 48 DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP------GSLTHISTD-HQGQFVFVGSYNAGNVSVTRLEDGLPVG 120 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS------SCCSEEEEC-TTSSEEEEEETTTTEEEEEEEETTEEEE
T ss_pred CCCEEEEeecCCCeEEEEEecCCCCceeeccccccC------CCCcEEEEc-CCCCEEEEEecCCCeEEEEECCCCcccc
Confidence 445 4444443 99999998211223344444443 357899999 7888776665 48899999994 344
Q ss_pred eeeeeecccccEEEEEec-CCCeEEEEe-CCCcEEEEEcCCCCCeeeee---ccCCCCCCeeEEEeeCCCCCEEEEEE-e
Q 035558 77 VDTQLIAHDKEVYDIAWG-GVGVFASVS-ADGSVRVFDLRDKEHSTIIY---ESSEPDTPLVRLGWNKQDPRYMATII-M 150 (253)
Q Consensus 77 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~l~~~~-~ 150 (253)
....+.. ...+.+++|+ +++.+++++ .++.|.+||+.+........ ........+..++|+| +++++++++ .
T Consensus 121 ~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-dg~~l~~~~~~ 198 (343)
T 1ri6_A 121 VVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNEL 198 (343)
T ss_dssp EEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSEEEEEETT
T ss_pred ccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC-CCCEEEEEeCC
Confidence 4444443 3458899999 888777777 89999999998733222111 1112234788899999 888776666 4
Q ss_pred CCCeEEEEECCCCCCCe---eeec---cc---ccceeEEEEecCCCCeEE-EecCCCcEEEEeccCCCCCCCCCCCCeee
Q 035558 151 DSAKVVVLDIRFPTLPV---VELQ---RH---QASVNAIAWAPHSSCHIC-TAGDDSQALIWDLSSMGQPVEGGLDPILA 220 (253)
Q Consensus 151 ~~~~i~~~d~~~~~~~~---~~~~---~~---~~~i~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 220 (253)
++. |.+||+....... ..+. .. ...+..++|+|++. +|+ ++..++.|.+||+....... .....
T Consensus 199 ~~~-i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~-~l~v~~~~~~~i~v~d~~~~~~~~----~~~~~ 272 (343)
T 1ri6_A 199 NSS-VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR-HLYACDRTASLITVFSVSEDGSVL----SKEGF 272 (343)
T ss_dssp TTE-EEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCCE----EEEEE
T ss_pred CCE-EEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCC-EEEEEecCCCEEEEEEEcCCCCce----EEeee
Confidence 555 9999996422111 1121 11 23566899999994 555 66689999999998422111 01122
Q ss_pred ccCCCceeEEEEcCCCCceEEEE-cCCcEEEEE
Q 035558 221 YTAGAEIEQLQWSSSQPDWVAIA-FSTKLQILR 252 (253)
Q Consensus 221 ~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~vw~ 252 (253)
......+..++|+|+++.+++++ .++.+.+|+
T Consensus 273 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 273 QPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp EECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred ecCCCccceEEECCCCCEEEEecCCCCeEEEEE
Confidence 22223488999999999777776 579999995
No 134
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.92 E-value=1.7e-23 Score=168.19 Aligned_cols=157 Identities=15% Similarity=0.212 Sum_probs=123.1
Q ss_pred CCeeEEEecCCCCCEEE----EEeCCCeEEEEeccCc--------e---eeeeeecccccEEEEEec-C-CCeEEEEeCC
Q 035558 43 GPLTSFDWNEAEPRRIG----TSSIDTTCTIWDIERE--------A---VDTQLIAHDKEVYDIAWG-G-VGVFASVSAD 105 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~----~~~~dg~i~vwd~~~~--------~---~~~~~~~~~~~v~~~~~~-~-~~~l~~~~~d 105 (253)
..|.+++|+ +++++|+ +|+.|+.|++||++++ + ....+.+|...|.+++|+ + +.+|++++.|
T Consensus 93 ~~v~~l~~s-pdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D 171 (434)
T 2oit_A 93 FPIHHLALS-CDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD 171 (434)
T ss_dssp SCEEEEEEC-TTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred CcccEEEEc-CCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC
Confidence 679999999 8899999 7888999999998765 2 134556799999999999 5 8899999999
Q ss_pred CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc-------ccccee
Q 035558 106 GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR-------HQASVN 178 (253)
Q Consensus 106 g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-------~~~~i~ 178 (253)
|+|++||++++.. ......+...|.+++|+| ++++|++++.|+. |++||.+ .. ....+.. |...+.
T Consensus 172 g~v~iwD~~~~~~---~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~-v~iwd~~-~~-~~~~~~~~~~~~~~~~~~v~ 244 (434)
T 2oit_A 172 GSIAVLQVTETVK---VCATLPSTVAVTSVCWSP-KGKQLAVGKQNGT-VVQYLPT-LQ-EKKVIPCPPFYESDHPVRVL 244 (434)
T ss_dssp SCEEEEEESSSEE---EEEEECGGGCEEEEEECT-TSSCEEEEETTSC-EEEECTT-CC-EEEEECCCTTCCTTSCEEEE
T ss_pred CeEEEEEcCCCcc---eeeccCCCCceeEEEEcC-CCCEEEEEcCCCc-EEEEccC-Cc-ccccccCCcccCCCCceeEE
Confidence 9999999998742 222234556899999999 8999999999998 9999998 22 2333332 334899
Q ss_pred EEEEecCCCCeEEE-ecCCCc------EEEEeccCCC
Q 035558 179 AIAWAPHSSCHICT-AGDDSQ------ALIWDLSSMG 208 (253)
Q Consensus 179 ~~~~~~~~~~~l~~-~~~dg~------i~iwd~~~~~ 208 (253)
+++|++++ .++++ ...||. +++|++++..
T Consensus 245 ~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 245 DVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp EEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred EEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCC
Confidence 99999987 45543 334433 8999998753
No 135
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=2.4e-22 Score=156.33 Aligned_cols=239 Identities=13% Similarity=0.133 Sum_probs=155.6
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC-CeEEEEecc--Cce-
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID-TTCTIWDIE--REA- 76 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~vwd~~--~~~- 76 (253)
....++++++ + .|++|+++.. ...+....+ .+. ..+.+++|+ +++++|++++.+ +.|++|++. +++
T Consensus 3 ~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~-~~~-----~~~~~~~~s-pdg~~l~~~~~~~~~v~~~~~~~~~~~~ 74 (343)
T 1ri6_A 3 LKQTVYIASPESQQIHVWNLNHE-GALTLTQVV-DVP-----GQVQPMVVS-PDKRYLYVGVRPEFRVLAYRIAPDDGAL 74 (343)
T ss_dssp CEEEEEEEEGGGTEEEEEEECTT-SCEEEEEEE-ECS-----SCCCCEEEC-TTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred ceEEEEEeCCCCCeEEEEEECCC-CcEEEeeeE-ecC-----CCCceEEEC-CCCCEEEEeecCCCeEEEEEecCCCCce
Confidence 3444555544 5 9999999642 222333333 344 578899999 889988888876 899999997 444
Q ss_pred -eeeeeecccccEEEEEec-CCCeEEEEeC-CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE-eCC
Q 035558 77 -VDTQLIAHDKEVYDIAWG-GVGVFASVSA-DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII-MDS 152 (253)
Q Consensus 77 -~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~~~ 152 (253)
.+..+..+. .+..++|+ +++.+++++. ++.|.+||+..+........... ...+.+++|+| +++++++++ .++
T Consensus 75 ~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~ 151 (343)
T 1ri6_A 75 TFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISP-DNRTLWVPALKQD 151 (343)
T ss_dssp EEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECT-TSSEEEEEEGGGT
T ss_pred eeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECC-CCCEEEEecCCCC
Confidence 334444333 78899999 8887766654 88999999953222222222222 23688999999 888888877 666
Q ss_pred CeEEEEECCCCCCCee----eecc-cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeee---ccCC
Q 035558 153 AKVVVLDIRFPTLPVV----ELQR-HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILA---YTAG 224 (253)
Q Consensus 153 ~~i~~~d~~~~~~~~~----~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~ 224 (253)
. |.+||+.+...... .+.. ....+..++|+|++..+++++..++.|.+|++................ ....
T Consensus 152 ~-v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 230 (343)
T 1ri6_A 152 R-ICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDT 230 (343)
T ss_dssp E-EEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSC
T ss_pred E-EEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcccccc
Confidence 6 99999986332111 2222 334788899999994244555689999999996422111000000000 0113
Q ss_pred CceeEEEEcCCCCceEEEE-cCCcEEEEEC
Q 035558 225 AEIEQLQWSSSQPDWVAIA-FSTKLQILRV 253 (253)
Q Consensus 225 ~~v~~~~~~~~~~~~~~~~-~~~~i~vw~l 253 (253)
..+..++|+|+++++++++ .++.+.+|++
T Consensus 231 ~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~ 260 (343)
T 1ri6_A 231 RWAADIHITPDGRHLYACDRTASLITVFSV 260 (343)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCccceEECCCCCEEEEEecCCCEEEEEEE
Confidence 4677899999998777544 6889999974
No 136
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.92 E-value=5.4e-22 Score=155.07 Aligned_cols=235 Identities=10% Similarity=0.062 Sum_probs=156.5
Q ss_pred CCceEEeec---C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe-CCCeEEEEeccC-c--
Q 035558 4 KPDLLATSS---D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS-IDTTCTIWDIER-E-- 75 (253)
Q Consensus 4 ~~~~l~~~~---~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~-~-- 75 (253)
++++++++. + .|++|++..+ ..+.+..+..+. ..+..++|+ +++++|++++ .++.|.+|++.. +
T Consensus 50 dg~l~~~~~~~~~~~v~~~~~~~g--~~~~~~~~~~~~-----~~p~~~a~s-pdg~~l~~~~~~~~~v~v~~~~~~g~~ 121 (347)
T 3hfq_A 50 KDCLYSVDKEDDEGGIAAWQIDGQ--TAHKLNTVVAPG-----TPPAYVAVD-EARQLVYSANYHKGTAEVMKIAADGAL 121 (347)
T ss_dssp TCEEEEEEEETTEEEEEEEEEETT--EEEEEEEEEEES-----CCCSEEEEE-TTTTEEEEEETTTTEEEEEEECTTSCE
T ss_pred CCeEEEEEecCCCceEEEEEecCC--cEEEeeeeecCC-----CCCEEEEEC-CCCCEEEEEeCCCCEEEEEEeCCCCCe
Confidence 455666654 3 9999999764 223444444455 678899999 8999888877 789999999963 2
Q ss_pred eeeeeeec---------ccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeec-cCCCCCCeeEEEeeCCCCCE
Q 035558 76 AVDTQLIA---------HDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYE-SSEPDTPLVRLGWNKQDPRY 144 (253)
Q Consensus 76 ~~~~~~~~---------~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~ 144 (253)
+.+..+.. +...+.+++|+ +++++++...++.|.+||+........... .......+..++|+| ++++
T Consensus 122 ~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp-dg~~ 200 (347)
T 3hfq_A 122 TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP-DGQY 200 (347)
T ss_dssp EEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT-TSSE
T ss_pred eecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC-CCCE
Confidence 22333321 11248899999 888777777789999999983332222221 112223678899999 8887
Q ss_pred EEEEEeCCCeEEEEECCCCCCC---eeeecccc------cceeEEEEecCCCCeE-EEecCCCcEEEEeccCCCCCCCCC
Q 035558 145 MATIIMDSAKVVVLDIRFPTLP---VVELQRHQ------ASVNAIAWAPHSSCHI-CTAGDDSQALIWDLSSMGQPVEGG 214 (253)
Q Consensus 145 l~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~------~~i~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~ 214 (253)
+++++..+..|.+|++...... +..+.... ..+..++|+|+| ++| ++...++.|.+|++.......
T Consensus 201 l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG-~~l~v~~~~~~~v~v~~~~~~g~~~--- 276 (347)
T 3hfq_A 201 AFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDG-HFLYVSNRGYNTLAVFAVTADGHLT--- 276 (347)
T ss_dssp EEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTS-CEEEEEEETTTEEEEEEECGGGCEE---
T ss_pred EEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCC-CEEEEEeCCCCEEEEEEECCCCcEE---
Confidence 7776655545999998752211 22222222 358889999999 566 566678999999997422111
Q ss_pred CCCeeeccCCCceeEEEEcCCCCceEEEEcC-CcEEEEE
Q 035558 215 LDPILAYTAGAEIEQLQWSSSQPDWVAIAFS-TKLQILR 252 (253)
Q Consensus 215 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~i~vw~ 252 (253)
.......+...+..++|+|+++++++++.+ +.+.+|+
T Consensus 277 -~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~ 314 (347)
T 3hfq_A 277 -LIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYA 314 (347)
T ss_dssp -EEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred -EeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence 012333456678999999999977777654 8899995
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=4.1e-22 Score=154.64 Aligned_cols=238 Identities=10% Similarity=0.051 Sum_probs=158.4
Q ss_pred CCCCceEEeec-C-cEEEEEccCCccccce-eeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCC---eEEEEeccCc
Q 035558 2 CQKPDLLATSS-D-FLRVWRISDEDRRVEL-KSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT---TCTIWDIERE 75 (253)
Q Consensus 2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~ 75 (253)
|+...+++++. + .|.+||+.++ +. ...+..+. .+..+++|+ +++++++++..++ .|.+||++++
T Consensus 49 ~dg~~l~~~~~~~~~i~~~d~~~~----~~~~~~~~~~~-----~~~~~~~~s-~dg~~l~~~~~~~~~~~i~v~d~~~~ 118 (331)
T 3u4y_A 49 SDCSNVVVTSDFCQTLVQIETQLE----PPKVVAIQEGQ-----SSMADVDIT-PDDQFAVTVTGLNHPFNMQSYSFLKN 118 (331)
T ss_dssp SSSCEEEEEESTTCEEEEEECSSS----SCEEEEEEECS-----SCCCCEEEC-TTSSEEEECCCSSSSCEEEEEETTTT
T ss_pred CCCCEEEEEeCCCCeEEEEECCCC----ceeEEecccCC-----CCccceEEC-CCCCEEEEecCCCCcccEEEEECCCC
Confidence 44444555555 4 9999999886 54 55666665 555559999 8999888555553 8999999999
Q ss_pred eeeeeeecccccEEEEEec-CCCeEE-EEeCCCc-EEEEEcCCCCCeeee-eccCCCCCCeeEEEeeCCCCCEEEEEEeC
Q 035558 76 AVDTQLIAHDKEVYDIAWG-GVGVFA-SVSADGS-VRVFDLRDKEHSTII-YESSEPDTPLVRLGWNKQDPRYMATIIMD 151 (253)
Q Consensus 76 ~~~~~~~~~~~~v~~~~~~-~~~~l~-~~~~dg~-i~i~d~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 151 (253)
+.+..+.. ...+.+++|+ ++++++ +...++. |.+|++......... ............++|+| +++++++++..
T Consensus 119 ~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~ 196 (331)
T 3u4y_A 119 KFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP-DGNFAFVANLI 196 (331)
T ss_dssp EEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT-TSSEEEEEETT
T ss_pred CeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC-CCCEEEEEeCC
Confidence 88877764 3456899999 887555 4456688 999999865432111 11112233678999999 88877666654
Q ss_pred CCeEEEEECCCCCCC--eeeecccccceeEEEEecCCCCeEE-EecCCCcEEEEeccCCCCCCCC--CCCCeeeccCCCc
Q 035558 152 SAKVVVLDIRFPTLP--VVELQRHQASVNAIAWAPHSSCHIC-TAGDDSQALIWDLSSMGQPVEG--GLDPILAYTAGAE 226 (253)
Q Consensus 152 ~~~i~~~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~ 226 (253)
+..|.+||+.+.+.. +..+.. ...+..++|+|++ ++|+ +...++.|.+||+.+++..... .............
T Consensus 197 ~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg-~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (331)
T 3u4y_A 197 GNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDG-STVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFG 274 (331)
T ss_dssp TTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTS-SEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTT
T ss_pred CCeEEEEECCCCcccceeeeccC-CCCCceEEECCCC-CEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCccc
Confidence 444999999875530 444443 4667899999999 5555 4456889999999886531100 0000000011112
Q ss_pred eeEEEEcCCCCceEEEE-cCCcEEEEEC
Q 035558 227 IEQLQWSSSQPDWVAIA-FSTKLQILRV 253 (253)
Q Consensus 227 v~~~~~~~~~~~~~~~~-~~~~i~vw~l 253 (253)
...++|+|+++++++++ .++.+.+|++
T Consensus 275 ~~~~~~spdg~~l~v~~~~~~~v~v~d~ 302 (331)
T 3u4y_A 275 ANQMALNKTETKLFISANISRELKVFTI 302 (331)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEET
T ss_pred ccceEECCCCCEEEEecCCCCcEEEEEe
Confidence 25689999999776555 4668999985
No 138
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=3e-22 Score=165.17 Aligned_cols=232 Identities=7% Similarity=0.026 Sum_probs=164.9
Q ss_pred CCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEec--cCceeee
Q 035558 4 KPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDI--EREAVDT 79 (253)
Q Consensus 4 ~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~--~~~~~~~ 79 (253)
++.+++++++ +|.+||..++ +++.++..+. . +..++|+ +++++|++++.|+.|++||+ .+++.+.
T Consensus 148 ~~~~~vs~~~d~~V~v~D~~t~----~~~~~i~~g~-----~-~~~v~~s-pdg~~l~v~~~d~~V~v~D~~~~t~~~~~ 216 (543)
T 1nir_A 148 PNLFSVTLRDAGQIALVDGDSK----KIVKVIDTGY-----A-VHISRMS-ASGRYLLVIGRDARIDMIDLWAKEPTKVA 216 (543)
T ss_dssp GGEEEEEEGGGTEEEEEETTTC----CEEEEEECST-----T-EEEEEEC-TTSCEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred CCEEEEEEcCCCeEEEEECCCc----eEEEEEecCc-----c-cceEEEC-CCCCEEEEECCCCeEEEEECcCCCCcEEE
Confidence 4567777764 9999999987 7788887544 3 7899999 89999999999999999999 8888888
Q ss_pred eeecccccEEEEEec-----CCCeEEEEeC-CCcEEEEEcCCCCCeeeeeccC--------CCCCCeeEEEeeCCCCCEE
Q 035558 80 QLIAHDKEVYDIAWG-----GVGVFASVSA-DGSVRVFDLRDKEHSTIIYESS--------EPDTPLVRLGWNKQDPRYM 145 (253)
Q Consensus 80 ~~~~~~~~v~~~~~~-----~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~l 145 (253)
.+. +...+..++|+ +++++++++. +++|.+||..+.+....+.... .+...+..+.++|....++
T Consensus 217 ~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 217 EIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp EEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred EEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence 887 45567999998 5788888874 8999999999888665554311 1223788999999444445
Q ss_pred EEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEE-EecCCCcEEEEeccCCCCCCCCCCCCeeeccCC
Q 035558 146 ATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHIC-TAGDDSQALIWDLSSMGQPVEGGLDPILAYTAG 224 (253)
Q Consensus 146 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 224 (253)
++...++. |.+||..+.+........+...+..++|+|++ ++|+ ++..+++|.+||+.+++.... .+.....|.
T Consensus 296 vs~~~~g~-i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg-~~l~va~~~~~~v~v~D~~tg~l~~~---i~~g~~ph~ 370 (543)
T 1nir_A 296 VNVKETGK-VLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSH-RYFMTAANNSNKVAVIDSKDRRLSAL---VDVGKTPHP 370 (543)
T ss_dssp EEETTTTE-EEEEECTTSSSCEEEEEECCSSCCCEEECTTS-CEEEEEEGGGTEEEEEETTTTEEEEE---EECSSSBCC
T ss_pred EEECCCCe-EEEEEecCCCcceeEEeccCcCccCceECCCC-CEEEEEecCCCeEEEEECCCCeEEEe---eccCCCCCC
Confidence 55545555 99999987654222222356678899999999 5554 556789999999998763320 000011254
Q ss_pred CceeEEEEcCCCCceE-EEE-cCCcEEEEEC
Q 035558 225 AEIEQLQWSSSQPDWV-AIA-FSTKLQILRV 253 (253)
Q Consensus 225 ~~v~~~~~~~~~~~~~-~~~-~~~~i~vw~l 253 (253)
.....+ ++|++..++ ++. .++.|.+|++
T Consensus 371 g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~ 400 (543)
T 1nir_A 371 GRGANF-VHPKYGPVWSTSHLGDGSISLIGT 400 (543)
T ss_dssp TTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred CCCccc-CCCCCccEEEeccCCCceEEEEEe
Confidence 444444 467744444 443 5799999974
No 139
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=4.5e-22 Score=164.07 Aligned_cols=234 Identities=15% Similarity=0.108 Sum_probs=167.5
Q ss_pred CCceEEeec-C-cEEEEEc--cCCccccceeeeecCCCCccccCCeeEEEecCC----CCCEEEEEe-CCCeEEEEeccC
Q 035558 4 KPDLLATSS-D-FLRVWRI--SDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEA----EPRRIGTSS-IDTTCTIWDIER 74 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~-~dg~i~vwd~~~ 74 (253)
++++|++++ + .|++||+ .+. +.+.++..+ ..+..++|+ + +++++++++ .+++|.+||..+
T Consensus 189 dg~~l~v~~~d~~V~v~D~~~~t~----~~~~~i~~g------~~p~~va~s-p~~~~dg~~l~v~~~~~~~v~v~D~~t 257 (543)
T 1nir_A 189 SGRYLLVIGRDARIDMIDLWAKEP----TKVAEIKIG------IEARSVESS-KFKGYEDRYTIAGAYWPPQFAIMDGET 257 (543)
T ss_dssp TSCEEEEEETTSEEEEEETTSSSC----EEEEEEECC------SEEEEEEEC-CSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred CCCEEEEECCCCeEEEEECcCCCC----cEEEEEecC------CCcceEEeC-CCcCCCCCEEEEEEccCCeEEEEeccc
Confidence 555555555 5 9999999 565 667777644 457899999 7 899998887 489999999999
Q ss_pred ceeeeeeec----------cc-ccEEEEEec-C-CCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC
Q 035558 75 EAVDTQLIA----------HD-KEVYDIAWG-G-VGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD 141 (253)
Q Consensus 75 ~~~~~~~~~----------~~-~~v~~~~~~-~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 141 (253)
++++..+.. |. ..+.++.++ + +.++++...++.|.+||+.+.+....... .....+..+.|+| +
T Consensus 258 ~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i--~~~~~~~~~~~sp-d 334 (543)
T 1nir_A 258 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI--GAAPFLHDGGWDS-S 334 (543)
T ss_dssp CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE--ECCSSCCCEEECT-T
T ss_pred cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe--ccCcCccCceECC-C
Confidence 998887764 22 268899999 4 45677778899999999988765442221 1234678899999 8
Q ss_pred CCEEEEEEeCCCeEEEEECCCCCCCeeeecc----cccceeEEEEecCCCCeEEEec-CCCcEEEEeccCCCCCCCCCCC
Q 035558 142 PRYMATIIMDSAKVVVLDIRFPTLPVVELQR----HQASVNAIAWAPHSSCHICTAG-DDSQALIWDLSSMGQPVEGGLD 216 (253)
Q Consensus 142 ~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 216 (253)
++++++++.....|.+||+.+++. +..+.. |.+....+ ++|++..+++++. .|++|.+||+.+...+......
T Consensus 335 g~~l~va~~~~~~v~v~D~~tg~l-~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~ 412 (543)
T 1nir_A 335 HRYFMTAANNSNKVAVIDSKDRRL-SALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK 412 (543)
T ss_dssp SCEEEEEEGGGTEEEEEETTTTEE-EEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE
T ss_pred CCEEEEEecCCCeEEEEECCCCeE-EEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeE
Confidence 888777665433499999998653 555543 54333333 5787445777776 6899999999884322111112
Q ss_pred CeeeccCCCceeEEEEcCCCCceEEEE-------cCCcEEEEEC
Q 035558 217 PILAYTAGAEIEQLQWSSSQPDWVAIA-------FSTKLQILRV 253 (253)
Q Consensus 217 ~~~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~~i~vw~l 253 (253)
...+..|...+..++++|+++++.+.+ .++.|.||++
T Consensus 413 v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~ 456 (543)
T 1nir_A 413 VAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL 456 (543)
T ss_dssp EEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred EEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEEC
Confidence 245667888889999999999777665 2679999985
No 140
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=3.3e-21 Score=150.64 Aligned_cols=227 Identities=11% Similarity=0.055 Sum_probs=163.3
Q ss_pred CCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCcc----ccCCeeEEEecCCCCCEEEEEe--CCCeEEEEecc
Q 035558 2 CQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSE----YCGPLTSFDWNEAEPRRIGTSS--IDTTCTIWDIE 73 (253)
Q Consensus 2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~--~dg~i~vwd~~ 73 (253)
|+...++++.. + .|.+||..++ +....+..+.... ....+.+++|+ ++++++++++ .++.|.+||.+
T Consensus 98 ~dg~~l~v~~~~~~~v~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 98 NTTQTLWFGNTVNSAVTAIDAKTG----EVKGRLVLDDRKRTEEVRPLQPRELVAD-DATNTVYISGIGKESVIWVVDGG 172 (353)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTC----CEEEEEESCCCCCCSSCCCCEEEEEEEE-TTTTEEEEEEESSSCEEEEEETT
T ss_pred CCCCEEEEEecCCCEEEEEeCCCC----eeEEEEecCCCccccccCCCCCceEEEC-CCCCEEEEEecCCCceEEEEcCC
Confidence 34444556655 3 9999999887 6666665543110 00126889999 7888777665 47899999999
Q ss_pred CceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeecc-CCCCCCeeEEEeeCCCCCEEEEEEeC
Q 035558 74 REAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYES-SEPDTPLVRLGWNKQDPRYMATIIMD 151 (253)
Q Consensus 74 ~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~~ 151 (253)
+++....+..+...+..++|+ +++.+++++.++.|.+||+.+++....+... ..+...+..++|+| +++.+++++.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~ 251 (353)
T 3vgz_A 173 NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT-ARQRAFITDSK 251 (353)
T ss_dssp TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET-TTTEEEEEESS
T ss_pred CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC-CCCEEEEEeCC
Confidence 999888777556668899999 9999999999999999999988754444331 22344678899999 88877777766
Q ss_pred CCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEE
Q 035558 152 SAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQ 231 (253)
Q Consensus 152 ~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 231 (253)
+..|.+||..+.+. +..+.... ...++|+|++..++++...++.|.+||+.+++.. ........+.+++
T Consensus 252 ~~~v~~~d~~~~~~-~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~--------~~~~~~~~~~~~~ 320 (353)
T 3vgz_A 252 AAEVLVVDTRNGNI-LAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV--------KTFDTPTHPNSLA 320 (353)
T ss_dssp SSEEEEEETTTCCE-EEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEE--------EEEECCSEEEEEE
T ss_pred CCEEEEEECCCCcE-EEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEE--------EEEecCCCCCeEE
Confidence 44599999987653 45554332 2579999999434556667999999999876532 2233455789999
Q ss_pred EcCCCCceEEEEcC
Q 035558 232 WSSSQPDWVAIAFS 245 (253)
Q Consensus 232 ~~~~~~~~~~~~~~ 245 (253)
|+|+++.++.+..+
T Consensus 321 ~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 321 LSADGKTLYVSVKQ 334 (353)
T ss_dssp ECTTSCEEEEEEEC
T ss_pred EcCCCCEEEEEEcc
Confidence 99999866655544
No 141
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=2.4e-22 Score=171.89 Aligned_cols=229 Identities=14% Similarity=0.136 Sum_probs=162.3
Q ss_pred CCCceEEeecC--------cEEEEEccCCccccceeeeecCCCCc----------c-------c--cCCeeEEEecCCCC
Q 035558 3 QKPDLLATSSD--------FLRVWRISDEDRRVELKSLLNGNKNS----------E-------Y--CGPLTSFDWNEAEP 55 (253)
Q Consensus 3 ~~~~~l~~~~~--------~v~iw~~~~~~~~~~~~~~~~~~~~~----------~-------~--~~~v~~~~~~~~~~ 55 (253)
++|++|++++. .|++||+.++ +....+..+... . . ...|.+++|+ |++
T Consensus 46 pdG~~la~~~~~d~~~~~~~i~~~d~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S-pDg 120 (741)
T 2ecf_A 46 PDGSRVTFLRGKDSDRNQLDLWSYDIGSG----QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS-PDA 120 (741)
T ss_dssp TTSSEEEEEECCSSCTTEEEEEEEETTTC----CEEEEECGGGTC--------------------CCEESCCCEEC-TTS
T ss_pred cCCCEEEEEeccCCCCcccEEEEEECCCC----ceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC-CCC
Confidence 35666666542 6999999886 544455443310 0 0 0127899999 899
Q ss_pred CEEEEEeCCCeEEEEeccCce--eeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCC--
Q 035558 56 RRIGTSSIDTTCTIWDIEREA--VDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDT-- 130 (253)
Q Consensus 56 ~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-- 130 (253)
++|++++. +.|++||+.+++ ....+..|...+..++|+ +++.|++++ ++.|++||+.+++...... .+..
T Consensus 121 ~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~---~~~~~~ 195 (741)
T 2ecf_A 121 QRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTA---DGSTTI 195 (741)
T ss_dssp SEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCC---CCCSSE
T ss_pred CEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEecc---CCccce
Confidence 99999886 899999999873 345566788889999999 999999887 4689999998875322211 1111
Q ss_pred --------------CeeEEEeeCCCCCEEEEEEeCCC--------------------------------eEEEEECCC-C
Q 035558 131 --------------PLVRLGWNKQDPRYMATIIMDSA--------------------------------KVVVLDIRF-P 163 (253)
Q Consensus 131 --------------~i~~~~~~~~~~~~l~~~~~~~~--------------------------------~i~~~d~~~-~ 163 (253)
.+..++|+| +++.|++++.++. .|.+||+.+ .
T Consensus 196 ~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 274 (741)
T 2ecf_A 196 GNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA 274 (741)
T ss_dssp EESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred eccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence 147899999 9999998877651 488999987 5
Q ss_pred CCCeeeec--ccccceeEEEEecCCCCeEEEec-----CCCcEEEEeccCCCCCCCCCCCCeeeccCCC----ceeEEEE
Q 035558 164 TLPVVELQ--RHQASVNAIAWAPHSSCHICTAG-----DDSQALIWDLSSMGQPVEGGLDPILAYTAGA----EIEQLQW 232 (253)
Q Consensus 164 ~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~ 232 (253)
+. ..... .|...+..++| |+| ++|++++ .+..|++||+.+++... ....+.. .+..++|
T Consensus 275 ~~-~~~~~~~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~~~g~~~~-------~~~~~~~~~~~~~~~~~~ 344 (741)
T 2ecf_A 275 QT-QWIDLGKEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTLASNQQRV-------LAHETSPTWVPLHNSLRF 344 (741)
T ss_dssp CC-EEECCCSCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEETTTCCEEE-------EEEEECSSCCCCCSCCEE
T ss_pred ce-EEecCCCCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEECCCCceEE-------EEEcCCCCcCCcCCceEE
Confidence 53 32222 47788999999 999 5777554 36789999998876332 2222222 4568999
Q ss_pred cCCCCceEEEEcCCcEEEEE
Q 035558 233 SSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 233 ~~~~~~~~~~~~~~~i~vw~ 252 (253)
+|+++.+++++.++.++||.
T Consensus 345 spdg~~~~~~~~~g~~~l~~ 364 (741)
T 2ecf_A 345 LDDGSILWSSERTGFQHLYR 364 (741)
T ss_dssp CTTSCEEEEECTTSSCEEEE
T ss_pred CCCCeEEEEecCCCccEEEE
Confidence 99999666777788788875
No 142
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=4.3e-21 Score=149.99 Aligned_cols=214 Identities=9% Similarity=0.077 Sum_probs=155.9
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEE-EEEeCCCeEEEEeccCceeeeeeecccc------
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRI-GTSSIDTTCTIWDIEREAVDTQLIAHDK------ 86 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~------ 86 (253)
.|.+||..++ +....+... ..+..++|+ ++++++ ++...++.|.+||.++++.+..+..+..
T Consensus 70 ~v~~~d~~~~----~~~~~~~~~------~~~~~~~~s-~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 138 (353)
T 3vgz_A 70 VVYRLDPVTL----EVTQAIHND------LKPFGATIN-NTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEV 138 (353)
T ss_dssp EEEEECTTTC----CEEEEEEES------SCCCSEEEE-TTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSC
T ss_pred cEEEEcCCCC----eEEEEEecC------CCcceEEEC-CCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcccccc
Confidence 7999999886 666666543 346789999 777754 5556679999999999988777765432
Q ss_pred ---cEEEEEec-CCCeEEEEe--CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558 87 ---EVYDIAWG-GVGVFASVS--ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160 (253)
Q Consensus 87 ---~v~~~~~~-~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~ 160 (253)
.+.+++|+ +++.+++++ .++.|.+||..+.+....+. .....+..++|+| +++.+++++.++. |.+||+
T Consensus 139 ~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~---~~~~~~~~~~~s~-dg~~l~~~~~~~~-i~~~d~ 213 (353)
T 3vgz_A 139 RPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ---NTGKMSTGLALDS-EGKRLYTTNADGE-LITIDT 213 (353)
T ss_dssp CCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC---CCCTTCCCCEEET-TTTEEEEECTTSE-EEEEET
T ss_pred CCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec---CCCCccceEEECC-CCCEEEEEcCCCe-EEEEEC
Confidence 27889999 888777665 48899999999876433332 2233578899999 8898998888777 999999
Q ss_pred CCCCCCeeeecc----cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC
Q 035558 161 RFPTLPVVELQR----HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ 236 (253)
Q Consensus 161 ~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 236 (253)
.+.+. ...+.. +...+..++|+|++..++++...++.|.+||+.+++... .... .. ...++|+|++
T Consensus 214 ~~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~-------~~~~-~~-~~~~~~s~dg 283 (353)
T 3vgz_A 214 ADNKI-LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA-------KVAA-PE-SLAVLFNPAR 283 (353)
T ss_dssp TTTEE-EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE-------EEEC-SS-CCCEEEETTT
T ss_pred CCCeE-EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE-------EEEc-CC-CceEEECCCC
Confidence 87653 444432 455688899999995344444556999999998876432 1111 12 2579999999
Q ss_pred CceEEEE-cCCcEEEEEC
Q 035558 237 PDWVAIA-FSTKLQILRV 253 (253)
Q Consensus 237 ~~~~~~~-~~~~i~vw~l 253 (253)
+.+++++ .++.|.+|++
T Consensus 284 ~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 284 NEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp TEEEEEETTTTEEEEEET
T ss_pred CEEEEEECCCCeEEEEEC
Confidence 8666555 6899999984
No 143
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=1.4e-21 Score=152.50 Aligned_cols=224 Identities=9% Similarity=0.002 Sum_probs=158.9
Q ss_pred CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEE-EEEeCCCeEEEEeccCceeee
Q 035558 3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRI-GTSSIDTTCTIWDIEREAVDT 79 (253)
Q Consensus 3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~ 79 (253)
+++.++++++ + .|++||+.++ +....+..+.. ..+..++|+ ++++.+ +++..++.|.+||+.+++...
T Consensus 9 ~~~~~~v~~~~~~~v~~~d~~~~----~~~~~~~~~~~----~~~~~~~~s-~dg~~~~v~~~~~~~i~~~d~~t~~~~~ 79 (349)
T 1jmx_B 9 AGHEYMIVTNYPNNLHVVDVASD----TVYKSCVMPDK----FGPGTAMMA-PDNRTAYVLNNHYGDIYGIDLDTCKNTF 79 (349)
T ss_dssp TTCEEEEEEETTTEEEEEETTTT----EEEEEEECSSC----CSSCEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCEEEEEeCCCCeEEEEECCCC----cEEEEEecCCC----CCCceeEEC-CCCCEEEEEeCCCCcEEEEeCCCCcEEE
Confidence 4566777766 4 9999999886 66666654421 256789999 788755 555678999999999988777
Q ss_pred eeecc------cccEEEEEec-CCCeEEEEeCC------------CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC
Q 035558 80 QLIAH------DKEVYDIAWG-GVGVFASVSAD------------GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ 140 (253)
Q Consensus 80 ~~~~~------~~~v~~~~~~-~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 140 (253)
.+... ...+..++|+ +++++++++.+ +.|.+||+.+++....+.....+ ..+.+++|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~- 157 (349)
T 1jmx_B 80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-RQVYLMRAAD- 157 (349)
T ss_dssp EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-SSCCCEEECT-
T ss_pred EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC-CcccceeECC-
Confidence 66532 2337889999 99999988865 89999999875432222222222 2688899999
Q ss_pred CCCEEEEEEeCCCeEEEEECCCCCCCeeeecccc----------------------------------------------
Q 035558 141 DPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQ---------------------------------------------- 174 (253)
Q Consensus 141 ~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---------------------------------------------- 174 (253)
+++ ++++ ++. |.+||+.+.+. +..+..+.
T Consensus 158 dg~-l~~~--~~~-i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 232 (349)
T 1jmx_B 158 DGS-LYVA--GPD-IYKMDVKTGKY-TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL 232 (349)
T ss_dssp TSC-EEEE--SSS-EEEECTTTCCE-EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred CCc-EEEc--cCc-EEEEeCCCCce-eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccc
Confidence 777 5554 344 99999987552 33322111
Q ss_pred ----------------------cceeEEEEec-CCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEE
Q 035558 175 ----------------------ASVNAIAWAP-HSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQ 231 (253)
Q Consensus 175 ----------------------~~i~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 231 (253)
..+..++|+| ++ ++++++ ++.|.+||+.+++.. ........+.+++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l~~~--~~~v~~~d~~~~~~~--------~~~~~~~~~~~~~ 301 (349)
T 1jmx_B 233 YGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYGV--LNRLAKYDLKQRKLI--------KAANLDHTYYCVA 301 (349)
T ss_dssp EEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEEE--ESEEEEEETTTTEEE--------EEEECSSCCCEEE
T ss_pred eeEEEEeccCCcEEecccccCCCcceeeEecCCCC-CEEEEE--cCeEEEEECccCeEE--------EEEcCCCCccceE
Confidence 1345677889 88 577777 899999999886532 2222344578999
Q ss_pred EcCCCCceEEEEcCCcEEEEEC
Q 035558 232 WSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 232 ~~~~~~~~~~~~~~~~i~vw~l 253 (253)
|+|+++.+++++.++.|++|++
T Consensus 302 ~s~dg~~l~~~~~~~~v~v~d~ 323 (349)
T 1jmx_B 302 FDKKGDKLYLGGTFNDLAVFNP 323 (349)
T ss_dssp ECSSSSCEEEESBSSEEEEEET
T ss_pred ECCCCCEEEEecCCCeEEEEec
Confidence 9999988888888899999985
No 144
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=4.6e-22 Score=169.65 Aligned_cols=227 Identities=11% Similarity=0.099 Sum_probs=159.4
Q ss_pred CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC---------CeEEEEec
Q 035558 3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID---------TTCTIWDI 72 (253)
Q Consensus 3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~vwd~ 72 (253)
+++++++++.+ .|++||+.++ +....+..|.... ..|.+++|+ |++++|++++.+ +.|++||+
T Consensus 26 pdg~~~~~~~dg~i~~~d~~~g----~~~~~~~~~~~~~--~~v~~~~~S-pDg~~l~~~~~~~~~~~~~~~~~i~~~d~ 98 (723)
T 1xfd_A 26 SDTEFIYREQKGTVRLWNVETN----TSTVLIEGKKIES--LRAIRYEIS-PDREYALFSYNVEPIYQHSYTGYYVLSKI 98 (723)
T ss_dssp SSSCBCCCCSSSCEEEBCGGGC----CCEEEECTTTTTT--TTCSEEEEC-TTSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred CCCcEEEEeCCCCEEEEECCCC----cEEEEeccccccc--cccceEEEC-CCCCEEEEEecCccceeecceeeEEEEEC
Confidence 35667777666 9999999987 6666666665100 148999999 899999999764 78889999
Q ss_pred cCcee--eeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCC---------------CCCeeE
Q 035558 73 EREAV--DTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEP---------------DTPLVR 134 (253)
Q Consensus 73 ~~~~~--~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---------------~~~i~~ 134 (253)
.+++. +.....|...+..++|+ +++.|++++. +.|++||+.+++........... ...+..
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~ 177 (723)
T 1xfd_A 99 PHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA 177 (723)
T ss_dssp SSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred CCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcce
Confidence 98875 22222445558899999 9999999886 78999999987754433221110 013378
Q ss_pred EEeeCCCCCEEEEEEeCC---------------------------------CeEEEEECCCCCCCeeeeccc------cc
Q 035558 135 LGWNKQDPRYMATIIMDS---------------------------------AKVVVLDIRFPTLPVVELQRH------QA 175 (253)
Q Consensus 135 ~~~~~~~~~~l~~~~~~~---------------------------------~~i~~~d~~~~~~~~~~~~~~------~~ 175 (253)
++|+| +++.|++++.++ ..|++||+.+... ...+..+ ..
T Consensus 178 ~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~-~~~l~~~~~~~~~~~ 255 (723)
T 1xfd_A 178 HWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH-DLEMMPPDDPRMREY 255 (723)
T ss_dssp EEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC-CEECCCCCCGGGSSE
T ss_pred EEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce-eEEeeCCccCCCccc
Confidence 99999 999999887653 1499999987653 3444433 56
Q ss_pred ceeEEEEecCCCCeEEEec----CCCcEEEEeccCCCCCCCCCCCCeeeccCCCce----eEEEEcCCCCceEE--EEcC
Q 035558 176 SVNAIAWAPHSSCHICTAG----DDSQALIWDLSSMGQPVEGGLDPILAYTAGAEI----EQLQWSSSQPDWVA--IAFS 245 (253)
Q Consensus 176 ~i~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~~--~~~~ 245 (253)
.+..++|+||| ++|++.+ .+..|++||+.+++... .....+...+ ..++|+|+|+.++. ...+
T Consensus 256 ~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~g~~~~------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 328 (723)
T 1xfd_A 256 YITMVKWATST-KVAVTWLNRAQNVSILTLCDATTGVCTK------KHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ 328 (723)
T ss_dssp EEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTTCCEEE------EEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC
T ss_pred eeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeCCCCcceE------EEEeccCCEEeccCCCceEcCCCCeEEEEEeccc
Confidence 78999999999 5776654 34689999998876332 1112233443 37899999997774 3455
Q ss_pred C
Q 035558 246 T 246 (253)
Q Consensus 246 ~ 246 (253)
+
T Consensus 329 ~ 329 (723)
T 1xfd_A 329 G 329 (723)
T ss_dssp S
T ss_pred C
Confidence 5
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=1.6e-21 Score=151.36 Aligned_cols=228 Identities=11% Similarity=0.004 Sum_probs=160.1
Q ss_pred CCCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe------------CCCeE
Q 035558 2 CQKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS------------IDTTC 67 (253)
Q Consensus 2 p~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------------~dg~i 67 (253)
|+...+++++.+ .|.+||+.++ +....+.......+...+.+++|+ +++++++++. .++.|
T Consensus 43 ~dg~~l~v~~~~~~~v~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~~~~i 117 (337)
T 1pby_B 43 PGGRIAYATVNKSESLVKIDLVTG----ETLGRIDLSTPEERVKSLFGAALS-PDGKTLAIYESPVRLELTHFEVQPTRV 117 (337)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTC----CEEEEEECCBTTEEEECTTCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEE
T ss_pred CCCCEEEEEeCCCCeEEEEECCCC----CeEeeEEcCCcccccccccceEEC-CCCCEEEEEecccccccccccccCceE
Confidence 444455566653 9999999886 555544422100011357789999 8898888886 57999
Q ss_pred EEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEE
Q 035558 68 TIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMA 146 (253)
Q Consensus 68 ~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 146 (253)
.+||+.+++.+..+.. ...+.+++|+ ++++++++ ++.|.+||+.+++....+... .... .+.|+| ++..++
T Consensus 118 ~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~---~~~~s~-dg~~l~ 189 (337)
T 1pby_B 118 ALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQ-SWEA---ETYAQP-DVLAVW 189 (337)
T ss_dssp EEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECST-TTTT---TTBCCC-BCCCCC
T ss_pred EEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecc-ccCC---CceeCC-CccEEe
Confidence 9999998887776664 4567889999 88888887 688999999987643333221 1111 237788 666555
Q ss_pred EEEeCCC-----------------------eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEe
Q 035558 147 TIIMDSA-----------------------KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWD 203 (253)
Q Consensus 147 ~~~~~~~-----------------------~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd 203 (253)
+.+..+. .|.+||+.+.+.....+..+...+.+++|+|++ ++++++ ++.|.+||
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~--~~~v~~~d 266 (337)
T 1pby_B 190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFD 266 (337)
T ss_dssp CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEEE
T ss_pred eeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCC-CEEEEe--CCeEEEEE
Confidence 4443332 268999988653233444566678899999999 578777 79999999
Q ss_pred ccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 204 LSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
+.+++.. ........+.+++|+|+++++++++.++.|++|++
T Consensus 267 ~~~~~~~--------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 267 LEKNASI--------KRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp TTTTEEE--------EEEECSSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred CCCCcCc--------ceecCCCceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence 9876532 22233456789999999998888888999999985
No 146
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=1.4e-21 Score=167.08 Aligned_cols=228 Identities=13% Similarity=0.098 Sum_probs=166.9
Q ss_pred CCCceEEeecC-cEEEEEccCCccccc--eeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558 3 QKPDLLATSSD-FLRVWRISDEDRRVE--LKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT 79 (253)
Q Consensus 3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 79 (253)
+++++|+++++ .|++||+.++ . ....+..|. ..+..++|+ |++++|+.++ ++.|++||+.+++...
T Consensus 118 pDg~~l~~~~~~~i~~~d~~~~----~~~~~~~l~~~~-----~~~~~~~~S-PDG~~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 118 PDAQRLLFPLGGELYLYDLKQE----GKAAVRQLTHGE-----GFATDAKLS-PKGGFVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp TTSSEEEEEETTEEEEEESSSC----STTSCCBCCCSS-----SCEEEEEEC-TTSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred CCCCEEEEEeCCcEEEEECCCC----CcceEEEcccCC-----cccccccCC-CCCCEEEEEe-CCcEEEEecCCCCEEE
Confidence 46777777777 9999999874 2 455566676 789999999 8999999887 4699999999887665
Q ss_pred eeeccccc----------------EEEEEec-CCCeEEEEeCCC---------------------------------cEE
Q 035558 80 QLIAHDKE----------------VYDIAWG-GVGVFASVSADG---------------------------------SVR 109 (253)
Q Consensus 80 ~~~~~~~~----------------v~~~~~~-~~~~l~~~~~dg---------------------------------~i~ 109 (253)
....+... +..++|+ +++.|++++.|+ .|.
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 44433332 4779999 999999988776 789
Q ss_pred EEEcCC-CCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC----CCeEEEEECCCCCCCeeeeccccc----ceeEE
Q 035558 110 VFDLRD-KEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMD----SAKVVVLDIRFPTLPVVELQRHQA----SVNAI 180 (253)
Q Consensus 110 i~d~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~----~i~~~ 180 (253)
+||+.+ ++.... .....+...+..++| | +++.|++++.+ ...|++||+.+++. ...+..+.. .+..+
T Consensus 267 ~~d~~~~~~~~~~-~~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~~ 342 (741)
T 2ecf_A 267 VISPAEQAQTQWI-DLGKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASNQQ-RVLAHETSPTWVPLHNSL 342 (741)
T ss_dssp EECSSTTCCCEEE-CCCSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTCCE-EEEEEEECSSCCCCCSCC
T ss_pred EEECCCCCceEEe-cCCCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCCce-EEEEEcCCCCcCCcCCce
Confidence 999988 764322 222234558899999 9 89988877652 22499999988653 444444432 45689
Q ss_pred EEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEE-EEcCCCCceEEEEcC-C--cEEEEEC
Q 035558 181 AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQL-QWSSSQPDWVAIAFS-T--KLQILRV 253 (253)
Q Consensus 181 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~-~--~i~vw~l 253 (253)
+|+|+| +++++++.||.++||.+...... ..+..+...+..+ .|+|+++.++..+.+ + .+++|++
T Consensus 343 ~~spdg-~~~~~~~~~g~~~l~~~~~~~~~-------~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~ 411 (741)
T 2ecf_A 343 RFLDDG-SILWSSERTGFQHLYRIDSKGKA-------AALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAV 411 (741)
T ss_dssp EECTTS-CEEEEECTTSSCEEEEECSSSCE-------EESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEE
T ss_pred EECCCC-eEEEEecCCCccEEEEEcCCCCe-------eeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEE
Confidence 999999 58999999998888887632222 3555677788887 599999877655544 3 7889863
No 147
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=1e-20 Score=161.08 Aligned_cols=236 Identities=11% Similarity=0.112 Sum_probs=162.5
Q ss_pred CCCceEEeecC-cEEEEEccC-----CccccceeeeecCCCCcc---------ccCCeeEEEecCCCCCEEEEEe-----
Q 035558 3 QKPDLLATSSD-FLRVWRISD-----EDRRVELKSLLNGNKNSE---------YCGPLTSFDWNEAEPRRIGTSS----- 62 (253)
Q Consensus 3 ~~~~~l~~~~~-~v~iw~~~~-----~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~~----- 62 (253)
++++.|+.+.+ .|++|++.+ + +.......+.... ....+.+++|+ |++++|++++
T Consensus 130 pdG~~la~~~~~~i~v~~~~~~~~~~g----~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~S-pDg~~la~~~~d~~~ 204 (706)
T 2z3z_A 130 PVGDRVAYVRNHNLYIARGGKLGEGMS----RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWS-PKGSCLAFYRMDQSM 204 (706)
T ss_dssp TTSSEEEEEETTEEEEEECBCTTSCCC----CCEESCSCCBTTEEESSCCGGGCTTCCCSEEEC-TTSSEEEEEEEECTT
T ss_pred CCCCEEEEEECCeEEEEecCcccccCC----CcEEeccCCCCCeEcccchhhhhcCCCceEEEC-CCCCEEEEEEECCCC
Confidence 35667777777 999999987 5 4444333333100 00225899999 8999999887
Q ss_pred ----------------------------CCCeEEEEeccCceeeeeee--cccccEEEEEec-CCCeEEEEeCCC-----
Q 035558 63 ----------------------------IDTTCTIWDIEREAVDTQLI--AHDKEVYDIAWG-GVGVFASVSADG----- 106 (253)
Q Consensus 63 ----------------------------~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~dg----- 106 (253)
.+..|++||+.+++...... .|...+.+++|+ +++.|++++.++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 284 (706)
T 2z3z_A 205 VKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNEC 284 (706)
T ss_dssp SCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEE
T ss_pred CceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCee
Confidence 44689999999887554332 466789999999 999999888775
Q ss_pred cEEEEEcCCCCCeeeeeccC--CCCCCeeEEEeeC-CCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeE-EEE
Q 035558 107 SVRVFDLRDKEHSTIIYESS--EPDTPLVRLGWNK-QDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNA-IAW 182 (253)
Q Consensus 107 ~i~i~d~~~~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~-~~~ 182 (253)
.|++||+.+++....+.... .....+..++|+| .+++++++++.++. +++|++......+..+..+...+.. ++|
T Consensus 285 ~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~-~~l~~~~~~~~~~~~l~~~~~~v~~~~~~ 363 (706)
T 2z3z_A 285 KVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW-NHLYLYDTTGRLIRQVTKGEWEVTNFAGF 363 (706)
T ss_dssp EEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSS-CEEEEEETTSCEEEECCCSSSCEEEEEEE
T ss_pred EEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCc-cEEEEEECCCCEEEecCCCCeEEEeeeEE
Confidence 89999999884333333211 1112346789998 25668888877877 8888876333346677777777876 799
Q ss_pred ecCCCCeEEEecCCC----cEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcC----CcEEEEEC
Q 035558 183 APHSSCHICTAGDDS----QALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFS----TKLQILRV 253 (253)
Q Consensus 183 ~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~i~vw~l 253 (253)
+|++..++++++.++ .|..||+.++.. ....+...+.+++|+|++++++..+.+ ..+.+|++
T Consensus 364 spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~---------~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 364 DPKGTRLYFESTEASPLERHFYCIDIKGGKT---------KDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp CTTSSEEEEEESSSCTTCBEEEEEETTCCCC---------EESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred cCCCCEEEEEecCCCCceEEEEEEEcCCCCc---------eeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence 999953445555555 566666655431 233366779999999999977765444 45888874
No 148
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=1.9e-21 Score=165.57 Aligned_cols=223 Identities=11% Similarity=0.120 Sum_probs=158.1
Q ss_pred CCCCCceEEeecCcEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC-----c
Q 035558 1 ECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER-----E 75 (253)
Q Consensus 1 sp~~~~~l~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-----~ 75 (253)
||+ +.++++.+..|++||+.++ +.. .+..+. ..+.+++|+ |+++.|+.+ .++.|++||+.+ +
T Consensus 90 spd-~~~~~~~~~~i~~~d~~~~----~~~-~l~~~~-----~~~~~~~~S-pdG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 90 AGR-GLVVLFTQGGLVGFDMLAR----KVT-YLFDTN-----EETASLDFS-PVGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp TTT-TEEEEEETTEEEEEETTTT----EEE-EEECCT-----TCCTTCEEC-TTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred CCC-CeEEEEECCEEEEEECCCC----ceE-EccCCc-----ccccCCcCC-CCCCEEEEE-ECCeEEEEecCcccccCC
Confidence 455 5555554349999999885 433 334444 578899999 899999885 679999999998 7
Q ss_pred eeeeeeeccccc--------------EEEEEec-CCCeEEEEe---------------------------------CCCc
Q 035558 76 AVDTQLIAHDKE--------------VYDIAWG-GVGVFASVS---------------------------------ADGS 107 (253)
Q Consensus 76 ~~~~~~~~~~~~--------------v~~~~~~-~~~~l~~~~---------------------------------~dg~ 107 (253)
+.......+... +.+++|+ +++.|++++ .+..
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 665544433332 4889999 999999987 4567
Q ss_pred EEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC----CeEEEEECCCCCCCeeeec--cccc---cee
Q 035558 108 VRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS----AKVVVLDIRFPTLPVVELQ--RHQA---SVN 178 (253)
Q Consensus 108 i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~----~~i~~~d~~~~~~~~~~~~--~~~~---~i~ 178 (253)
|++||+.+++.... .....+...+.+++|+| +++.|++++.+. ..|++||+.++.. ...+. .+.. .+.
T Consensus 237 l~~~d~~~~~~~~~-~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~-~~~~~~~~~~~~~~~~~ 313 (706)
T 2z3z_A 237 VGIYHLATGKTVYL-QTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRF-VRTLFVETDKHYVEPLH 313 (706)
T ss_dssp EEEEETTTTEEEEC-CCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCE-EEEEEEEECSSCCCCCS
T ss_pred EEEEECCCCceEee-ccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCce-eeEEEEccCCCeECccC
Confidence 99999988763222 22223455789999999 999999887765 2499999988632 22222 1221 246
Q ss_pred EEEEec--CCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeE-EEEcCCCCceEEEEcCC
Q 035558 179 AIAWAP--HSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQ-LQWSSSQPDWVAIAFST 246 (253)
Q Consensus 179 ~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~ 246 (253)
.++|+| ++ +++++++.|+.+++|++....... ..+..+...+.. ++|+|+++.++.++.++
T Consensus 314 ~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~~~~------~~l~~~~~~v~~~~~~spdg~~l~~~~~~~ 377 (706)
T 2z3z_A 314 PLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTGRLI------RQVTKGEWEVTNFAGFDPKGTRLYFESTEA 377 (706)
T ss_dssp CCEECTTCSS-EEEEEECTTSSCEEEEEETTSCEE------EECCCSSSCEEEEEEECTTSSEEEEEESSS
T ss_pred CceeecCCCC-EEEEEEccCCccEEEEEECCCCEE------EecCCCCeEEEeeeEEcCCCCEEEEEecCC
Confidence 789999 98 699999999999999887322211 244556677776 79999998777665543
No 149
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.88 E-value=3.8e-21 Score=170.07 Aligned_cols=227 Identities=10% Similarity=0.045 Sum_probs=171.5
Q ss_pred CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCc------cccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc
Q 035558 3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNS------EYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE 75 (253)
Q Consensus 3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 75 (253)
+++..|+.+.+ .|++|++.. ..+..+.++... .+...+.+++|+||+++.|++++ ++.|++|++..+
T Consensus 254 pDG~~la~~~~~~i~~~d~~~-----~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~ 327 (1045)
T 1k32_A 254 TDGRRILFSKGGSIYIFNPDT-----EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGT 327 (1045)
T ss_dssp ESSSCEEEEETTEEEEECTTT-----CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSS
T ss_pred CCCCEEEEEeCCEEEEecCCc-----eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCC
Confidence 35667777777 999999844 223344442100 01146889999955788888887 789999999877
Q ss_pred eeeeeeecccc-cEEEEEecCCCeEEEEeCCCcEE-EEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC
Q 035558 76 AVDTQLIAHDK-EVYDIAWGGVGVFASVSADGSVR-VFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA 153 (253)
Q Consensus 76 ~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 153 (253)
+... +..|.. .+..++|++++.+++++.++.+. +||+.+++... + ..+...+..++|+| +++.|++++.++.
T Consensus 328 ~~~~-~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~-l---~~~~~~~~~~~~Sp-DG~~la~~~~~~~ 401 (1045)
T 1k32_A 328 YVLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK-F---EENLGNVFAMGVDR-NGKFAVVANDRFE 401 (1045)
T ss_dssp BEEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE-C---CCCCCSEEEEEECT-TSSEEEEEETTSE
T ss_pred ceEE-ccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCceE-e---cCCccceeeeEECC-CCCEEEEECCCCe
Confidence 6443 555666 88999998667888888888888 99998765322 1 14556899999999 9999999998887
Q ss_pred eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCC----------CcEEEEeccCCCCCCCCCCCCeeeccC
Q 035558 154 KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDD----------SQALIWDLSSMGQPVEGGLDPILAYTA 223 (253)
Q Consensus 154 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~ 223 (253)
|++||+.+++. ......|...+.+++|+|+| ++|++++.+ +.|++||+.++. . ..+..|
T Consensus 402 -v~~~d~~tg~~-~~~~~~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~-------~~l~~~ 470 (1045)
T 1k32_A 402 -IMTVDLETGKP-TVIERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-I-------FAATTE 470 (1045)
T ss_dssp -EEEEETTTCCE-EEEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTE-E-------EECSCS
T ss_pred -EEEEECCCCce-EEeccCCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCCCc-E-------EEeeCC
Confidence 99999987653 45555788899999999999 688877654 499999998764 2 356677
Q ss_pred CCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 224 GAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 224 ~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
...+..++|+|+|+.++..+.++...+|+
T Consensus 471 ~~~~~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 471 NSHDYAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp SSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred CcccCCceEcCCCCEEEEEecccCCcCcc
Confidence 88899999999999888888877766664
No 150
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=1.2e-20 Score=157.28 Aligned_cols=218 Identities=8% Similarity=0.008 Sum_probs=150.6
Q ss_pred CCCceEEeec--C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC---CCeEEEEeccC--
Q 035558 3 QKPDLLATSS--D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI---DTTCTIWDIER-- 74 (253)
Q Consensus 3 ~~~~~l~~~~--~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~-- 74 (253)
+||+.||.++ + +++||+++.+ +..+....+. ..+..++|+ |+ +++++++. +...++|.+..
T Consensus 31 ~DG~~la~~s~~~g~~~lw~~~~g----~~~~lt~~~~-----~~~~~~~~s-pd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 31 VDGDKLLVVGFSEGSVNAYLYDGG----ETVKLNREPI-----NSVLDPHYG-VG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp ETTTEEEEEEEETTEEEEEEEETT----EEEECCSSCC-----SEECEECTT-CS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred CCCCeEEEEEccCCceeEEEEcCC----CcEeeecccc-----cccccccCC-CC-eEEEEeccCCCCcceEEEEEeccC
Confidence 4677777665 4 9999999765 4433333333 478899999 77 77777765 45556655433
Q ss_pred -ceeeeeeecccccEEEEEec-CCC--eEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558 75 -EAVDTQLIAHDKEVYDIAWG-GVG--VFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM 150 (253)
Q Consensus 75 -~~~~~~~~~~~~~v~~~~~~-~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 150 (253)
+... .+.... .+...+|+ +++ .+++++. +.+.+||+.+++...... .. . .+++|+| +++.|++++.
T Consensus 100 ~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~-~~~~l~d~~~g~~~~l~~-~~----~-~~~~~sp-DG~~la~~~~ 169 (582)
T 3o4h_A 100 PGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATE-DRVALYALDGGGLRELAR-LP----G-FGFVSDI-RGDLIAGLGF 169 (582)
T ss_dssp TTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECS-SCEEEEEEETTEEEEEEE-ES----S-CEEEEEE-ETTEEEEEEE
T ss_pred CCccc-cccCCC-CceeeeeCCCCCeEEEEecCC-CCceEEEccCCcEEEeec-CC----C-ceEEECC-CCCEEEEEEE
Confidence 2222 232221 23345666 554 4444444 455599998876433322 11 1 7899999 9999998877
Q ss_pred C----CCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCC--cEEEEeccCCCCCCCCCCCCeeeccCC
Q 035558 151 D----SAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDS--QALIWDLSSMGQPVEGGLDPILAYTAG 224 (253)
Q Consensus 151 ~----~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~ 224 (253)
+ .. |++||+.+++ ...+..|...+..++|+||| +.|+++..++ .|++||+.+++. ....+|.
T Consensus 170 ~~~~~~~-i~~~d~~~g~--~~~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~~~~--------~~~~~~~ 237 (582)
T 3o4h_A 170 FGGGRVS-LFTSNLSSGG--LRVFDSGEGSFSSASISPGM-KVTAGLETAREARLVTVDPRDGSV--------EDLELPS 237 (582)
T ss_dssp EETTEEE-EEEEETTTCC--CEEECCSSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTTCCE--------EECCCSC
T ss_pred cCCCCeE-EEEEcCCCCC--ceEeecCCCccccceECCCC-CEEEEccCCCeeEEEEEcCCCCcE--------EEccCCC
Confidence 6 44 9999998765 45777888889999999999 6888888888 899999987652 2344566
Q ss_pred CceeEEE--------EcCCCCceEEEEcCCcEEEEEC
Q 035558 225 AEIEQLQ--------WSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 225 ~~v~~~~--------~~~~~~~~~~~~~~~~i~vw~l 253 (253)
..+..++ |+|+|..+++++.++.+++|++
T Consensus 238 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 238 KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 6666677 9999976668888999999975
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=1.3e-19 Score=141.51 Aligned_cols=227 Identities=11% Similarity=0.053 Sum_probs=145.2
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC---CCeEEEEeccCce--eeeeeecccccE
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI---DTTCTIWDIEREA--VDTQLIAHDKEV 88 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~--~~~~~~~~~~~v 88 (253)
.|.+|.++........+... .+. ..+..++|+ ++++ |++++. ++.|++|++.+++ .+..+..+...+
T Consensus 17 ~i~v~~~d~~tg~~~~~~~~-~~~-----~~p~~~a~s-pdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p 88 (347)
T 3hfq_A 17 GIYQGTLDTTAKTLTNDGLL-AAT-----QNPTYLALS-AKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPP 88 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE-EEC-----SCCCCEEEC-TTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCC
T ss_pred CEEEEEEcCCCCeEEEeeee-ecc-----CCcceEEEc-cCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCC
Confidence 68888776531222222222 233 456789999 7888 555543 6899999997765 444445567788
Q ss_pred EEEEec-CCCeEEEEe-CCCcEEEEEcCCCCCeeeeeccCC---------CCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558 89 YDIAWG-GVGVFASVS-ADGSVRVFDLRDKEHSTIIYESSE---------PDTPLVRLGWNKQDPRYMATIIMDSAKVVV 157 (253)
Q Consensus 89 ~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~ 157 (253)
..++|+ ++++|++++ .++.|.+||+........+..... ....+.+++|+| +++++++...++. |.+
T Consensus 89 ~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~-v~~ 166 (347)
T 3hfq_A 89 AYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDK-VYV 166 (347)
T ss_dssp SEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTE-EEE
T ss_pred EEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCE-EEE
Confidence 999999 999888887 789999999964332222222111 112488899999 7774444444555 999
Q ss_pred EECCCCCCC--eeeecc-cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeecc------CCCcee
Q 035558 158 LDIRFPTLP--VVELQR-HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYT------AGAEIE 228 (253)
Q Consensus 158 ~d~~~~~~~--~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~v~ 228 (253)
||+...... ...+.. ....+..++|+|+|..+++++..++.|.+|++....... ........ ....+.
T Consensus 167 ~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~ 243 (347)
T 3hfq_A 167 YNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF---TQLGIVKTIPADYTAHNGAA 243 (347)
T ss_dssp EEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE---EEEEEEESSCTTCCSCCEEE
T ss_pred EEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce---EEeeeeeecCCCCCCCCcce
Confidence 999833321 111222 223577899999994244556788999999988522111 00001111 125688
Q ss_pred EEEEcCCCCceE-EEEcCCcEEEEEC
Q 035558 229 QLQWSSSQPDWV-AIAFSTKLQILRV 253 (253)
Q Consensus 229 ~~~~~~~~~~~~-~~~~~~~i~vw~l 253 (253)
.++|+|++++++ +...++.|.+|++
T Consensus 244 ~i~~spdG~~l~v~~~~~~~v~v~~~ 269 (347)
T 3hfq_A 244 AIRLSHDGHFLYVSNRGYNTLAVFAV 269 (347)
T ss_dssp EEEECTTSCEEEEEEETTTEEEEEEE
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEE
Confidence 999999999775 5556889999974
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=8.8e-19 Score=137.58 Aligned_cols=225 Identities=9% Similarity=0.068 Sum_probs=143.3
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe-CCCeEEEEeccCceeeeeee---c------
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS-IDTTCTIWDIEREAVDTQLI---A------ 83 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~---~------ 83 (253)
.|.+|+++......+.+.....+. .....+++ ++++|++++ .++.|.+|++.....+..+. .
T Consensus 76 ~v~~~~~~~~~g~~~~~~~~~~~~-----~~p~~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~ 147 (361)
T 3scy_A 76 AVSAFAFDKEKGTLHLLNTQKTMG-----ADPCYLTT---NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGP 147 (361)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSS-----SCEEEEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCS
T ss_pred cEEEEEEeCCCCcEEEeeEeccCC-----CCcEEEEE---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCC
Confidence 899999876312233444444343 45666776 577666665 67899999997543222111 1
Q ss_pred -----ccccEEEEEec-CCCeEEEEe-CCCcEEEEEcCCCCC------eee----eeccCCCCCCeeEEEeeCCCCCEEE
Q 035558 84 -----HDKEVYDIAWG-GVGVFASVS-ADGSVRVFDLRDKEH------STI----IYESSEPDTPLVRLGWNKQDPRYMA 146 (253)
Q Consensus 84 -----~~~~v~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~------~~~----~~~~~~~~~~i~~~~~~~~~~~~l~ 146 (253)
+...+.+++|+ +++++++++ .++.|.+|++..... ... .............++|+| ++++++
T Consensus 148 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~ 226 (361)
T 3scy_A 148 DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAY 226 (361)
T ss_dssp CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEE
T ss_pred CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEE
Confidence 12345889999 888665554 588999999986542 111 111122334678999999 898888
Q ss_pred EEEeCCCeEEEEECCCCCC-Ceeee---cccccceeEEEEecCCCCeEEEecC--CCcEEEEeccCCCCCCCCCCCCeee
Q 035558 147 TIIMDSAKVVVLDIRFPTL-PVVEL---QRHQASVNAIAWAPHSSCHICTAGD--DSQALIWDLSSMGQPVEGGLDPILA 220 (253)
Q Consensus 147 ~~~~~~~~i~~~d~~~~~~-~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~ 220 (253)
+++..+..|.+||+.+... .+..+ ..+......++|+|++ ++|+++.. ++.|.+|++....... .....
T Consensus 227 v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg-~~l~v~~~~~~~~i~v~~~~~~~g~~----~~~~~ 301 (361)
T 3scy_A 227 LINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDG-KYLYASNRLKADGVAIFKVDETNGTL----TKVGY 301 (361)
T ss_dssp EEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTS-SEEEEEECSSSCEEEEEEECTTTCCE----EEEEE
T ss_pred EEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCC-CEEEEECCCCCCEEEEEEEcCCCCcE----EEeeE
Confidence 8775444499999985431 12222 2233456799999999 57765554 5899999996322111 00111
Q ss_pred ccCCCceeEEEEcCCCCceEEEE-cCCcEEEEE
Q 035558 221 YTAGAEIEQLQWSSSQPDWVAIA-FSTKLQILR 252 (253)
Q Consensus 221 ~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~vw~ 252 (253)
......+..++|+|+++++++++ .++.+.+|+
T Consensus 302 ~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~ 334 (361)
T 3scy_A 302 QLTGIHPRNFIITPNGKYLLVACRDTNVIQIFE 334 (361)
T ss_dssp EECSSCCCEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred ecCCCCCceEEECCCCCEEEEEECCCCCEEEEE
Confidence 22256788999999999777776 678899975
No 153
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.86 E-value=1.2e-18 Score=136.89 Aligned_cols=227 Identities=7% Similarity=-0.013 Sum_probs=147.9
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC----CeEEEEeccC--ce--eeeeeeccc
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID----TTCTIWDIER--EA--VDTQLIAHD 85 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~vwd~~~--~~--~~~~~~~~~ 85 (253)
.|.+|.++......+..... +. ..+..++|+ +++++|++++.+ +.|.+|++.. ++ .+.....+.
T Consensus 28 ~i~~~~~d~~~g~~~~~~~~--~~-----~~p~~l~~s-pdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~ 99 (361)
T 3scy_A 28 GIYTFRFNEETGESLPLSDA--EV-----ANPSYLIPS-ADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG 99 (361)
T ss_dssp EEEEEEEETTTCCEEEEEEE--EC-----SCCCSEEEC-TTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS
T ss_pred CEEEEEEeCCCCCEEEeecc--cC-----CCCceEEEC-CCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC
Confidence 79999886532333333333 44 567789999 899999988875 7999999875 33 333334445
Q ss_pred ccEEEEEecCCCeEEEEe-CCCcEEEEEcCCCCCeeeee---ccC--------CCCCCeeEEEeeCCCCCEEEEEEeCCC
Q 035558 86 KEVYDIAWGGVGVFASVS-ADGSVRVFDLRDKEHSTIIY---ESS--------EPDTPLVRLGWNKQDPRYMATIIMDSA 153 (253)
Q Consensus 86 ~~v~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~---~~~--------~~~~~i~~~~~~~~~~~~l~~~~~~~~ 153 (253)
..+..+++ +++.+++++ .++.|.+|++.......... ... .....+.+++|+| +++++++++....
T Consensus 100 ~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~ 177 (361)
T 3scy_A 100 ADPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTD 177 (361)
T ss_dssp SCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTT
T ss_pred CCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCC
Confidence 56777777 777777666 68899999997654222111 111 1122457899999 8887777665444
Q ss_pred eEEEEECCCCCC------Ce------eeecccccceeEEEEecCCCCeEEEec-CCCcEEEEeccCCCCCCCCCCCCeee
Q 035558 154 KVVVLDIRFPTL------PV------VELQRHQASVNAIAWAPHSSCHICTAG-DDSQALIWDLSSMGQPVEGGLDPILA 220 (253)
Q Consensus 154 ~i~~~d~~~~~~------~~------~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 220 (253)
.|.+|++..... .. .....+...+..++|+|++ +++++++ .++.|.+|++.++..... ......
T Consensus 178 ~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~~--~~~~~~ 254 (361)
T 3scy_A 178 QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDEI--QTVAAD 254 (361)
T ss_dssp EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEEE--EEEESC
T ss_pred EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEEe--EEEecC
Confidence 499999875442 11 1122234567899999999 5666555 799999999985532110 000111
Q ss_pred ccCCCceeEEEEcCCCCceEEEEcC--CcEEEEEC
Q 035558 221 YTAGAEIEQLQWSSSQPDWVAIAFS--TKLQILRV 253 (253)
Q Consensus 221 ~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~vw~l 253 (253)
..+...+..++|+|++++++++..+ +.+.+|++
T Consensus 255 ~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~ 289 (361)
T 3scy_A 255 TVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKV 289 (361)
T ss_dssp SSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEE
T ss_pred CCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEE
Confidence 2234557899999999977666654 78999974
No 154
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.86 E-value=8.8e-20 Score=155.61 Aligned_cols=232 Identities=8% Similarity=0.053 Sum_probs=151.8
Q ss_pred CCCceEEeec----------C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEe
Q 035558 3 QKPDLLATSS----------D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWD 71 (253)
Q Consensus 3 ~~~~~l~~~~----------~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 71 (253)
+++++|++++ + .+++||+.++ . .+.+....+|. ..+..++|+ |+++.|+.++. +.|++||
T Consensus 70 pDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~-~-~~~l~~~~~~~-----~~~~~~~~S-PdG~~la~~~~-~~i~~~~ 140 (723)
T 1xfd_A 70 PDREYALFSYNVEPIYQHSYTGYYVLSKIPHG-D-PQSLDPPEVSN-----AKLQYAGWG-PKGQQLIFIFE-NNIYYCA 140 (723)
T ss_dssp TTSSEEEEEESCCCCSSSCCCSEEEEEESSSC-C-CEECCCTTCCS-----CCCSBCCBC-SSTTCEEEEET-TEEEEES
T ss_pred CCCCEEEEEecCccceeecceeeEEEEECCCC-c-eEeccCCcccc-----ccccccEEC-CCCCEEEEEEC-CeEEEEE
Confidence 3566666654 1 5779999885 1 11222223343 458899999 89999999886 7999999
Q ss_pred ccCceeeeeeecccccE------------------EEEEec-CCCeEEEEeCCC--------------------------
Q 035558 72 IEREAVDTQLIAHDKEV------------------YDIAWG-GVGVFASVSADG-------------------------- 106 (253)
Q Consensus 72 ~~~~~~~~~~~~~~~~v------------------~~~~~~-~~~~l~~~~~dg-------------------------- 106 (253)
+.+++.......+...+ .+++|+ +++.|++++.|+
T Consensus 141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (723)
T 1xfd_A 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK 220 (723)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC
Confidence 99887665554433333 789999 999999987653
Q ss_pred --------cEEEEEcCCCCCeeeeecc---CCCCCCeeEEEeeCCCCCEEEEEEeCC---CeEEEEECCCCCCCeeeecc
Q 035558 107 --------SVRVFDLRDKEHSTIIYES---SEPDTPLVRLGWNKQDPRYMATIIMDS---AKVVVLDIRFPTLPVVELQR 172 (253)
Q Consensus 107 --------~i~i~d~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~~~---~~i~~~d~~~~~~~~~~~~~ 172 (253)
.|++||+.+++....+... ..+...+..++|+| +++++++....+ ..|++||+.+++. ...+..
T Consensus 221 ~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~ 298 (723)
T 1xfd_A 221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVC-TKKHED 298 (723)
T ss_dssp TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCE-EEEEEE
T ss_pred CCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcc-eEEEEe
Confidence 7999999887643333211 01244788999999 888887765432 2499999987653 333322
Q ss_pred -cccce----eEEEEecCCCCeEEE--ecCCC------cEEEEeccCCCC---CCCCCCCCeeeccCCCceeE-EEEcCC
Q 035558 173 -HQASV----NAIAWAPHSSCHICT--AGDDS------QALIWDLSSMGQ---PVEGGLDPILAYTAGAEIEQ-LQWSSS 235 (253)
Q Consensus 173 -~~~~i----~~~~~~~~~~~~l~~--~~~dg------~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~v~~-~~~~~~ 235 (253)
+...+ ..++|+|+|. .|+. +..++ .|.+||+..... .. .+..+...+.. ++|+|+
T Consensus 299 ~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-------~l~~~~~~~~~~~~~spd 370 (723)
T 1xfd_A 299 ESEAWLHRQNEEPVFSKDGR-KFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQ-------SITSGDWDVTKILAYDEK 370 (723)
T ss_dssp ECSSCCCCCCCCCEECTTSC-SEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCC-------BSCCSSSCEEEEEEEETT
T ss_pred ccCCEEeccCCCceEcCCCC-eEEEEEecccCCCcceeEEEEEeccCCCCcccee-------EeecCCeEEEeeeEEcCC
Confidence 33333 3789999995 5553 55677 566677323222 21 22223334444 699999
Q ss_pred CCceEEEEcC---CcEEEEEC
Q 035558 236 QPDWVAIAFS---TKLQILRV 253 (253)
Q Consensus 236 ~~~~~~~~~~---~~i~vw~l 253 (253)
++.++..+.+ +.+++|++
T Consensus 371 g~~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 371 GNKIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp TTEEEEEESSSCTTCCEEEEE
T ss_pred CCEEEEEEcCCCCcceEEEEE
Confidence 9988766555 67888874
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=1e-20 Score=161.40 Aligned_cols=227 Identities=12% Similarity=0.166 Sum_probs=157.5
Q ss_pred CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC---------CCeEEEEecc
Q 035558 4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI---------DTTCTIWDIE 73 (253)
Q Consensus 4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------dg~i~vwd~~ 73 (253)
++.+++++.+ .|++||+.++ +....+.+|.... ..+.+++|+ |++++|+.++. ++.|++||+.
T Consensus 26 dg~~~~~~~d~~i~~~~~~~g----~~~~~~~~~~~~~--~~~~~~~~S-pDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 26 GQEYLHQSADNNIVLYNIETG----QSYTILSNRTMKS--VNASNYGLS-PDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp SSEEEEECTTSCEEEEESSSC----CEEEEECHHHHHT--TTCSEEEEC-TTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred CCeEEEEcCCCCEEEEEcCCC----cEEEEEccccccc--cceeeEEEC-CCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 4577777777 9999999987 5556665554100 148899999 89999998876 6899999999
Q ss_pred Cceee--eeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCC-----------------Cee
Q 035558 74 REAVD--TQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDT-----------------PLV 133 (253)
Q Consensus 74 ~~~~~--~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----------------~i~ 133 (253)
+++.+ ..+ ...+..++|+ +++.|+++. ++.|++||+.+++....... .+.. ...
T Consensus 99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~--~~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFN--GRENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp TTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCC--CBTTTEEESSCCHHHHHHTTCSSC
T ss_pred CCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecC--CCcCCeEcccccceeeeecccCcc
Confidence 88763 222 2568889999 999999886 78999999988765332211 1111 225
Q ss_pred EEEeeCCCCCEEEEEEeCCC---------------------------------eEEEEECCCCCC----Ce---eeeccc
Q 035558 134 RLGWNKQDPRYMATIIMDSA---------------------------------KVVVLDIRFPTL----PV---VELQRH 173 (253)
Q Consensus 134 ~~~~~~~~~~~l~~~~~~~~---------------------------------~i~~~d~~~~~~----~~---~~~~~~ 173 (253)
.++|+| +++.|++++.+.. .|++||+.+... .+ ..+..|
T Consensus 173 ~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 251 (719)
T 1z68_A 173 ALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS 251 (719)
T ss_dssp CEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred cEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence 899999 9999999886531 488999986542 01 123457
Q ss_pred ccceeEEEEecCCCCeEEEecCC----CcEEEEe----ccCCCCCCCCCCCCeee---ccCCCcee-----EEEEcCCCC
Q 035558 174 QASVNAIAWAPHSSCHICTAGDD----SQALIWD----LSSMGQPVEGGLDPILA---YTAGAEIE-----QLQWSSSQP 237 (253)
Q Consensus 174 ~~~i~~~~~~~~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~~~~~~~~---~~~~~~v~-----~~~~~~~~~ 237 (253)
...+..++|+||+ +++++.... ..|.+|| +.+++... ... .+|...+. .++|+|+|+
T Consensus 252 ~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~spdg~ 324 (719)
T 1z68_A 252 DYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWDCPK------TQEHIEESRTGWAGGFFVSTPVFSYDAI 324 (719)
T ss_dssp CEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEECCG------GGEEEEECSSSCSSSSSCCCCEECTTSS
T ss_pred cceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCceEE------EEecccccCCceEccccCCccEECCCCC
Confidence 8889999999997 677764422 3488888 66554322 111 35666666 889999998
Q ss_pred ceEE--EEcCCcEEEE
Q 035558 238 DWVA--IAFSTKLQIL 251 (253)
Q Consensus 238 ~~~~--~~~~~~i~vw 251 (253)
.++. ...++..+||
T Consensus 325 ~l~~~~~~~~g~~~l~ 340 (719)
T 1z68_A 325 SYYKIFSDKDGYKHIH 340 (719)
T ss_dssp CEEEEEECTTSCEEEE
T ss_pred eEEEEEEccCCceEEE
Confidence 6653 3345544444
No 156
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=9.8e-20 Score=141.21 Aligned_cols=220 Identities=11% Similarity=0.050 Sum_probs=153.7
Q ss_pred ceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccC-CeeEEEecCCCCCEE-EEEeCCCeEEEEeccCceeeeee
Q 035558 6 DLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCG-PLTSFDWNEAEPRRI-GTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 6 ~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
+++++++ + .|++||+.++ +....+..... . .+..++|+ ++++.+ +++..++.|.+||+.+++.+..+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~----~~~~~~~~~~~----~~~~~~~~~s-~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~ 72 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM----AVDKVITIADA----GPTPMVPMVA-PGGRIAYATVNKSESLVKIDLVTGETLGRI 72 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT----EEEEEEECTTC----TTCCCCEEEC-TTSSEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred cEEEEcCCCCeEEEEECCCC----cEEEEEEcCCC----CCCccceEEc-CCCCEEEEEeCCCCeEEEEECCCCCeEeeE
Confidence 4566665 4 9999999886 66666553220 1 47789999 777655 56666889999999998877666
Q ss_pred ec-c----cccEEEEEec-CCCeEEEEe------------CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCC
Q 035558 82 IA-H----DKEVYDIAWG-GVGVFASVS------------ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPR 143 (253)
Q Consensus 82 ~~-~----~~~v~~~~~~-~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 143 (253)
.. + ...+..++|+ +++.++++. .++.|.+||+.+++....+.. ...+..++|+| +++
T Consensus 73 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~s~-dg~ 147 (337)
T 1pby_B 73 DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA----PRQITMLAWAR-DGS 147 (337)
T ss_dssp ECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC----CSSCCCEEECT-TSS
T ss_pred EcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC----CCCcceeEECC-CCC
Confidence 52 1 2257789999 898888886 579999999988764333322 23577899999 888
Q ss_pred EEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEec-CCC-----------------------cE
Q 035558 144 YMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAG-DDS-----------------------QA 199 (253)
Q Consensus 144 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg-----------------------~i 199 (253)
+++++ ++. |.+||+.+.+. ...+..+.. ...+.|+|++. .++..+ .++ .|
T Consensus 148 ~l~~~--~~~-i~~~d~~~~~~-~~~~~~~~~-~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 221 (337)
T 1pby_B 148 KLYGL--GRD-LHVMDPEAGTL-VEDKPIQSW-EAETYAQPDVL-AVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221 (337)
T ss_dssp CEEEE--SSS-EEEEETTTTEE-EEEECSTTT-TTTTBCCCBCC-CCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred EEEEe--CCe-EEEEECCCCcE-eeeeecccc-CCCceeCCCcc-EEeeeccCCCceeeeeeccccccccccccccccce
Confidence 77777 566 99999987653 444443321 11237899984 444433 333 36
Q ss_pred EEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 200 LIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 200 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
.+||+.+++... .....+...+.+++|+|++++++++ ++.|.+|++
T Consensus 222 ~~~d~~~~~~~~------~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~ 267 (337)
T 1pby_B 222 LTMDLETGEMAM------REVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDL 267 (337)
T ss_dssp EEEETTTCCEEE------EEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEET
T ss_pred EEEeCCCCCceE------eecCCCCCceeeEEECCCCCEEEEe--CCeEEEEEC
Confidence 899998765321 2344566778899999999876666 789999975
No 157
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.85 E-value=3.5e-19 Score=140.18 Aligned_cols=235 Identities=7% Similarity=0.020 Sum_probs=150.6
Q ss_pred CCCceEEeecC-cEEEEEcc-CCccccceeeeecCCCCccccCCeeEEEecCCCCCE--EEEEe-------------CCC
Q 035558 3 QKPDLLATSSD-FLRVWRIS-DEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRR--IGTSS-------------IDT 65 (253)
Q Consensus 3 ~~~~~l~~~~~-~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--l~~~~-------------~dg 65 (253)
+++++|++++. .|.+|++. .+ +.......... +.+..++|+ +++++ ++++. .+|
T Consensus 49 pdg~~l~~~~~~~v~~~~~~~~g----~~~~~~~~~~~----g~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~~g 119 (365)
T 1jof_A 49 HERKNIYGAAMKKWSSFAVKSPT----EIVHEASHPIG----GHPRANDAD-TNTRAIFLLAAKQPPYAVYANPFYKFAG 119 (365)
T ss_dssp TTSSEEEEEEBTEEEEEEEEETT----EEEEEEEEECC----SSGGGGCTT-SCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred CCCCEEEEEccceEEEEEECCCC----CEEEeeEeecC----CCCccEEEC-CCCCEEEEEEecCCcceeccceeecCCc
Confidence 35666766665 99999997 54 33322221100 224568899 78884 44553 689
Q ss_pred eEEEEecc-Cceeeeeee----cccccEEEEEec-CCCeEEEEeC-CCcEEEEEcC-CCCCeeeee-ccCCCCCCeeEEE
Q 035558 66 TCTIWDIE-REAVDTQLI----AHDKEVYDIAWG-GVGVFASVSA-DGSVRVFDLR-DKEHSTIIY-ESSEPDTPLVRLG 136 (253)
Q Consensus 66 ~i~vwd~~-~~~~~~~~~----~~~~~v~~~~~~-~~~~l~~~~~-dg~i~i~d~~-~~~~~~~~~-~~~~~~~~i~~~~ 136 (253)
.+.+|++. .++....+. .+...+.+++|+ ++++++++.. ++.|++||+. +++...... ....+...+..++
T Consensus 120 ~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~ 199 (365)
T 1jof_A 120 YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVA 199 (365)
T ss_dssp EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEE
T ss_pred eEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeE
Confidence 99999997 455443333 245678999999 9988877654 6899999998 554321111 1111234689999
Q ss_pred eeCCCCCEEEEEEeCCCeEEEEECCC--CCCC-----eeeec----cccc------ceeEEE-EecCCCCeEEEecCC-C
Q 035558 137 WNKQDPRYMATIIMDSAKVVVLDIRF--PTLP-----VVELQ----RHQA------SVNAIA-WAPHSSCHICTAGDD-S 197 (253)
Q Consensus 137 ~~~~~~~~l~~~~~~~~~i~~~d~~~--~~~~-----~~~~~----~~~~------~i~~~~-~~~~~~~~l~~~~~d-g 197 (253)
|+| +++++++++..+..|.+|++.. ++.. +..+. +|.. .+..++ |+|+| ++|++++.+ +
T Consensus 200 ~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~ 277 (365)
T 1jof_A 200 MHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANK 277 (365)
T ss_dssp ECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESS
T ss_pred ECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCC
Confidence 999 8998888876544599998753 2210 11121 1222 578999 99999 577766543 2
Q ss_pred -----cEEEEeccC-CCCCCCCCCCCe-eeccCCCceeEEEEcC---CCCceEEEEc-CCcEEEEEC
Q 035558 198 -----QALIWDLSS-MGQPVEGGLDPI-LAYTAGAEIEQLQWSS---SQPDWVAIAF-STKLQILRV 253 (253)
Q Consensus 198 -----~i~iwd~~~-~~~~~~~~~~~~-~~~~~~~~v~~~~~~~---~~~~~~~~~~-~~~i~vw~l 253 (253)
+|.+|++.. +. .. ... ....+...+..++|+| +++++++++. ++.|++|++
T Consensus 278 ~~~~~~i~v~~~~~~g~-~~----~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 278 FELQGYIAGFKLRDCGS-IE----KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp TTSCCEEEEEEECTTSC-EE----EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred CCCCCeEEEEEECCCCC-EE----EeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence 899999963 32 11 000 1222455677899999 7987777765 489999974
No 158
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.85 E-value=5.7e-19 Score=151.08 Aligned_cols=235 Identities=11% Similarity=0.119 Sum_probs=161.2
Q ss_pred CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC---------CeEEEEec
Q 035558 3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID---------TTCTIWDI 72 (253)
Q Consensus 3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~vwd~ 72 (253)
+++.+++++ + .|++|++.++ +....+.+|....+......++|| |++++|+.++.+ +.+.+||+
T Consensus 26 ~dg~~~~~~-~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~S-pdg~~l~~~~~~~~~~r~~~~~~~~~~d~ 99 (740)
T 4a5s_A 26 SDHEYLYKQ-ENNILVFNAEYG----NSSVFLENSTFDEFGHSINDYSIS-PDGQFILLEYNYVKQWRHSYTASYDIYDL 99 (740)
T ss_dssp SSSEEEEEE-TTEEEEEETTTC----CEEEEECTTTTTTCCSCCCEEEEC-TTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CCCcEEEEc-CCcEEEEECCCC----ceEEEEechhhhhhcccccceEEC-CCCCEEEEEECCeeeEEEccceEEEEEEC
Confidence 456788887 6 9999999987 666667777633332334558899 899999998876 56779999
Q ss_pred cCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCC-----------------CCeeE
Q 035558 73 EREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPD-----------------TPLVR 134 (253)
Q Consensus 73 ~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----------------~~i~~ 134 (253)
++++... +..|...+...+|+ +++.|+.+. ++.|++||+.+++..+... .+.. +....
T Consensus 100 ~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~--~g~~~~~~~g~~~~v~~ee~~~~~~~ 175 (740)
T 4a5s_A 100 NKRQLIT-EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITW--TGKEDIIYNGITDWVYEEEVFSAYSA 175 (740)
T ss_dssp TTTEECC-SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCS--CCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred CCCcEEE-cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcC--CCCccceecCcccccccchhcCCCcc
Confidence 9887554 56677889999999 999999885 6899999998876433221 1111 12235
Q ss_pred EEeeCCCCCEEEEEEeCCC-----------------------------------eEEEEECCC---CCC-Ceeeec----
Q 035558 135 LGWNKQDPRYMATIIMDSA-----------------------------------KVVVLDIRF---PTL-PVVELQ---- 171 (253)
Q Consensus 135 ~~~~~~~~~~l~~~~~~~~-----------------------------------~i~~~d~~~---~~~-~~~~~~---- 171 (253)
+.|+| +++.||.++.|.+ .|++||+.+ +.. ....+.
T Consensus 176 ~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~ 254 (740)
T 4a5s_A 176 LWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS 254 (740)
T ss_dssp EEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH
T ss_pred eEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc
Confidence 89999 9999998764432 478889887 531 133343
Q ss_pred --ccccceeEEEEecCCCCeEEEec----CCCcEEEEeccCCC----CCCCCCCCCeeeccCCCcee-----EEEEcCCC
Q 035558 172 --RHQASVNAIAWAPHSSCHICTAG----DDSQALIWDLSSMG----QPVEGGLDPILAYTAGAEIE-----QLQWSSSQ 236 (253)
Q Consensus 172 --~~~~~i~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~v~-----~~~~~~~~ 236 (253)
+|...+..++|+|+| ++++... .+..|.+||+.+++ ... .......+|...+. .++|+|+|
T Consensus 255 ~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~---~~~l~~~~~~~~v~~~~~~~p~fspDG 330 (740)
T 4a5s_A 255 MLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVMDICDYDESSGRWNCLV---ARQHIEMSTTGWVGRFRPSEPHFTLDG 330 (740)
T ss_dssp HHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEEEEEEEETTTTEEEECG---GGCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEEEEEECCCCccccceeE---EEEeeeccCCceEccCcCCCceEcCCC
Confidence 377789999999999 5555442 34579999998876 111 00112234555444 78899999
Q ss_pred CceE-EEE-cCCc--EEEEE
Q 035558 237 PDWV-AIA-FSTK--LQILR 252 (253)
Q Consensus 237 ~~~~-~~~-~~~~--i~vw~ 252 (253)
+.++ ..+ .++. |.+|+
T Consensus 331 ~~l~~~~s~~~G~~~l~~~~ 350 (740)
T 4a5s_A 331 NSFYKIISNEEGYRHICYFQ 350 (740)
T ss_dssp SEEEEEEECTTSCEEEEEEE
T ss_pred CEEEEEEEcCCCceEEEEEE
Confidence 8766 554 3443 44443
No 159
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.85 E-value=2.7e-19 Score=158.34 Aligned_cols=220 Identities=9% Similarity=0.035 Sum_probs=163.1
Q ss_pred CCceEEeecC--cEE-EEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 4 KPDLLATSSD--FLR-VWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 4 ~~~~l~~~~~--~v~-iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
++..|+.+++ .+. +|++..+ +. ..+.+|. ..+..++|+ |++++|++++.++.|++||+.+++....
T Consensus 347 dg~~l~~~s~~~~l~~~~d~~~~----~~-~~l~~~~-----~~~~~~~~S-pDG~~la~~~~~~~v~~~d~~tg~~~~~ 415 (1045)
T 1k32_A 347 TKVAFIHGTREGDFLGIYDYRTG----KA-EKFEENL-----GNVFAMGVD-RNGKFAVVANDRFEIMTVDLETGKPTVI 415 (1045)
T ss_dssp SEEEEEEEETTEEEEEEEETTTC----CE-EECCCCC-----CSEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCCeEEEEECCCceEEEEECCCC----Cc-eEecCCc-----cceeeeEEC-CCCCEEEEECCCCeEEEEECCCCceEEe
Confidence 4455666664 777 8888774 33 3344666 789999999 8999999999999999999999988777
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCC----------cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADG----------SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII 149 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg----------~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 149 (253)
+.+|...+.+++|+ ++++|++++.++ .|++||+.+++ ......+...+..++|+| +++.|++++
T Consensus 416 ~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~----~~~l~~~~~~~~~~~~sp-dG~~l~~~s 490 (1045)
T 1k32_A 416 ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK----IFAATTENSHDYAPAFDA-DSKNLYYLS 490 (1045)
T ss_dssp EECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE----EEECSCSSSBEEEEEECT-TSCEEEEEE
T ss_pred ccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc----EEEeeCCCcccCCceEcC-CCCEEEEEe
Confidence 77899999999999 999998887654 89999998865 222234455788899999 999999888
Q ss_pred eCCCeEEEEECCCCC------------------------------------------CCeeeecccccceeEEEEecCCC
Q 035558 150 MDSAKVVVLDIRFPT------------------------------------------LPVVELQRHQASVNAIAWAPHSS 187 (253)
Q Consensus 150 ~~~~~i~~~d~~~~~------------------------------------------~~~~~~~~~~~~i~~~~~~~~~~ 187 (253)
.++. ...|+..... ..+..+..|...+..++++|++
T Consensus 491 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg- 568 (1045)
T 1k32_A 491 YRSL-DPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS- 568 (1045)
T ss_dssp SCCC-CCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSE-
T ss_pred cccC-CcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCC-
Confidence 7666 6666532211 0122334466778999999998
Q ss_pred CeEEE-------------ecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 188 CHICT-------------AGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 188 ~~l~~-------------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
.++++ ...+..|.+||+.+++.. .+. ..+.+++|+|+|+.+++++.+ .+++|++
T Consensus 569 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~--------~l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~ 635 (1045)
T 1k32_A 569 ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT--------EVK---NNLTDLRLSADRKTVMVRKDD-GKIYTFP 635 (1045)
T ss_dssp EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE--------EEE---EEEEEEEECTTSCEEEEEETT-SCEEEEE
T ss_pred eEEEEecccCcccccccccCCCceEEEEECCCCcEE--------Eee---cCcceEEECCCCCEEEEEcCC-cEEEEeC
Confidence 56664 123557888888876532 222 678899999999987777655 8999974
No 160
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.82 E-value=2.9e-17 Score=124.80 Aligned_cols=230 Identities=8% Similarity=-0.017 Sum_probs=152.8
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCC-CccccCCeeEEEecCCCCCEEEEEeC-CCeEEEEeccCceeee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNK-NSEYCGPLTSFDWNEAEPRRIGTSSI-DTTCTIWDIEREAVDT 79 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~ 79 (253)
+++++++.. + .|++|+.+. +....+.... ...+...+.++++.++++.++++... ++.|++|| .+++.+.
T Consensus 40 ~g~l~v~~~~~~~i~~~d~~g-----~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~ 113 (286)
T 1q7f_A 40 QNDIIVADTNNHRIQIFDKEG-----RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVR 113 (286)
T ss_dssp TCCEEEEEGGGTEEEEECTTS-----CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEE
T ss_pred CCCEEEEECCCCEEEEECCCC-----cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEE
Confidence 466777755 4 899999875 3344443211 00111567899995366776666543 78999999 4566665
Q ss_pred eee-cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558 80 QLI-AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV 157 (253)
Q Consensus 80 ~~~-~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~ 157 (253)
.+. .+...+.++++. +++++++...++.|.+||... +....+ ........+..++++| +++++++...++. |++
T Consensus 114 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~-~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~-i~~ 189 (286)
T 1q7f_A 114 KFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKF-GCSKHLEFPNGVVVND-KQEIFISDNRAHC-VKV 189 (286)
T ss_dssp EECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEE-ECTTTCSSEEEEEECS-SSEEEEEEGGGTE-EEE
T ss_pred EecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEEEe-CCCCccCCcEEEEECC-CCCEEEEECCCCE-EEE
Confidence 554 234578999999 888888888889999999653 322222 1112334688999999 7877666666666 999
Q ss_pred EECCCCCCCeeeeccc--ccceeEEEEecCCCCeEEEecCCC-cEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcC
Q 035558 158 LDIRFPTLPVVELQRH--QASVNAIAWAPHSSCHICTAGDDS-QALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS 234 (253)
Q Consensus 158 ~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 234 (253)
||... . .+..+..+ ...+..++++|++ +++++...++ .|.+||... +... ..........+.+++++|
T Consensus 190 ~~~~g-~-~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~g-~~~~-----~~~~~~~~~~~~~i~~~~ 260 (286)
T 1q7f_A 190 FNYEG-Q-YLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQDG-QLIS-----ALESKVKHAQCFDVALMD 260 (286)
T ss_dssp EETTC-C-EEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTTS-CEEE-----EEEESSCCSCEEEEEEET
T ss_pred EcCCC-C-EEEEEccCCccCCCcEEEECCCC-CEEEEeCCCCEEEEEECCCC-CEEE-----EEcccCCCCcceeEEECC
Confidence 99753 2 24445433 3578899999998 6888877775 999999543 2111 011112233578999999
Q ss_pred CCCceEEEEcCCcEEEEEC
Q 035558 235 SQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 235 ~~~~~~~~~~~~~i~vw~l 253 (253)
+++.+++ +.++.|++|++
T Consensus 261 ~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 261 DGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp TTEEEEE-ETTTEEEEEEC
T ss_pred CCcEEEE-CCCCeEEEEEc
Confidence 9974444 78999999984
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.81 E-value=3.3e-18 Score=142.60 Aligned_cols=189 Identities=12% Similarity=0.043 Sum_probs=136.3
Q ss_pred CCeeEEEecCCCCCEEEEEeC-CCeEEEEeccCceeeeeeeccc-ccEEEEEec-CCCeEEEEeC---CCcEEEEEcCC-
Q 035558 43 GPLTSFDWNEAEPRRIGTSSI-DTTCTIWDIEREAVDTQLIAHD-KEVYDIAWG-GVGVFASVSA---DGSVRVFDLRD- 115 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~-~~~~l~~~~~---dg~i~i~d~~~- 115 (253)
.+|.+++|+ ++++.|+.++. ||+++||++.+++..+ +..+. ..+..++|+ + +++++++. +....+|.+..
T Consensus 22 ~~~~~~~~~-~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 22 VEKYSLQGV-VDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp SCEEEEEEE-ETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred cchheeecC-CCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 689999999 89999998877 9999999997766554 44444 689999999 7 77777765 45567766654
Q ss_pred -CCCeeeeeccCCCCCCeeEEEeeCCCCC-EEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEe
Q 035558 116 -KEHSTIIYESSEPDTPLVRLGWNKQDPR-YMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTA 193 (253)
Q Consensus 116 -~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 193 (253)
......+.. . ......+|+| +++ .+++.+.++. +.+||+.+++ ...+..+.. .+++|+||| ++|+++
T Consensus 99 ~~g~~~~l~~---~-~~~~~~~~s~-dg~~~~~~s~~~~~-~~l~d~~~g~--~~~l~~~~~--~~~~~spDG-~~la~~ 167 (582)
T 3o4h_A 99 RPGEEQRLEA---V-KPMRILSGVD-TGEAVVFTGATEDR-VALYALDGGG--LRELARLPG--FGFVSDIRG-DLIAGL 167 (582)
T ss_dssp STTCCEECTT---S-CSBEEEEEEE-CSSCEEEEEECSSC-EEEEEEETTE--EEEEEEESS--CEEEEEEET-TEEEEE
T ss_pred CCCccccccC---C-CCceeeeeCC-CCCeEEEEecCCCC-ceEEEccCCc--EEEeecCCC--ceEEECCCC-CEEEEE
Confidence 322222211 1 1345678888 554 4445555556 7799998754 333433333 889999999 689887
Q ss_pred cCC----CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCC--cEEEEEC
Q 035558 194 GDD----SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFST--KLQILRV 253 (253)
Q Consensus 194 ~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~i~vw~l 253 (253)
+.| +.|++||+.+++. ..+..|...+..++|+|+|+.++++..++ .|.+|++
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~--------~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~ 225 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGL--------RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDP 225 (582)
T ss_dssp EEEETTEEEEEEEETTTCCC--------EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECT
T ss_pred EEcCCCCeEEEEEcCCCCCc--------eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcC
Confidence 776 7899999987652 35667888899999999999888777777 7888864
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.80 E-value=3.7e-17 Score=128.63 Aligned_cols=231 Identities=8% Similarity=0.021 Sum_probs=143.9
Q ss_pred cEEEEEccCCccccceeeeec-CCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEecc-Cceeeeeeec-ccccEEE
Q 035558 14 FLRVWRISDEDRRVELKSLLN-GNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE-REAVDTQLIA-HDKEVYD 90 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~-~~~~v~~ 90 (253)
.|.+|+++........+.... ... ..+..++|+ +++++|++++.+ .|.+|++. +++....... ..+.+..
T Consensus 15 ~i~~~~~d~~~g~l~~~~~~~~~~~-----~~~~~~a~s-pdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~ 87 (365)
T 1jof_A 15 AIFTVQFDDEKLTCKLIKRTEIPQD-----EPISWMTFD-HERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRA 87 (365)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCTT-----CCCSEEEEC-TTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGG
T ss_pred cEEEEEEECCCCCEEEeeEEccCCC-----CCCcEEEEC-CCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCcc
Confidence 588887754212222232221 122 357789999 899999988887 99999997 6765433221 1123456
Q ss_pred EEec-CCCe--EEEEe-------------CCCcEEEEEcCC-CCCeeeeecc-CCCCCCeeEEEeeCCCCCEEEEEEeCC
Q 035558 91 IAWG-GVGV--FASVS-------------ADGSVRVFDLRD-KEHSTIIYES-SEPDTPLVRLGWNKQDPRYMATIIMDS 152 (253)
Q Consensus 91 ~~~~-~~~~--l~~~~-------------~dg~i~i~d~~~-~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~~~ 152 (253)
++|+ +++. ++++. .+|.+.+|++.. ++....+... ..+...+.+++|+| ++++++++....
T Consensus 88 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~ 166 (365)
T 1jof_A 88 NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTA 166 (365)
T ss_dssp GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTT
T ss_pred EEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCC
Confidence 8888 8884 44553 689999999974 4322222211 12334789999999 888888776544
Q ss_pred CeEEEEECC-CCCC-Ceeeec--ccccceeEEEEecCCCCeEEEec-CCCcEEEEeccC--CCCC---CCCCCCCeeecc
Q 035558 153 AKVVVLDIR-FPTL-PVVELQ--RHQASVNAIAWAPHSSCHICTAG-DDSQALIWDLSS--MGQP---VEGGLDPILAYT 222 (253)
Q Consensus 153 ~~i~~~d~~-~~~~-~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~--~~~~---~~~~~~~~~~~~ 222 (253)
..|++||+. +++. .+..+. .|...+..++|+|+| ++|++++ .++.|.+|++.. ++.. ......+....+
T Consensus 167 ~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g 245 (365)
T 1jof_A 167 NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPD 245 (365)
T ss_dssp TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCC
T ss_pred CEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCC
Confidence 449999998 4432 122232 235668999999999 5777665 578999998763 3210 000000000012
Q ss_pred CCC------ceeEEE-EcCCCCceEEEEcC-C-----cEEEEEC
Q 035558 223 AGA------EIEQLQ-WSSSQPDWVAIAFS-T-----KLQILRV 253 (253)
Q Consensus 223 ~~~------~v~~~~-~~~~~~~~~~~~~~-~-----~i~vw~l 253 (253)
|.. .+..++ |+|++++++++..+ + .|.+|++
T Consensus 246 ~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~ 289 (365)
T 1jof_A 246 RDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL 289 (365)
T ss_dssp BCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred cccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence 222 588999 99999977765543 3 7999974
No 163
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=148.50 Aligned_cols=196 Identities=14% Similarity=0.144 Sum_probs=135.0
Q ss_pred eEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccc---cEEEEEec-CCCeEEEEeC---------CCcEEEEE
Q 035558 46 TSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDK---EVYDIAWG-GVGVFASVSA---------DGSVRVFD 112 (253)
Q Consensus 46 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---~v~~~~~~-~~~~l~~~~~---------dg~i~i~d 112 (253)
.+++|+ +++++++ .+.|+.|++||+.+++....+..+.. .+.+++|+ ++++|++++. ++.|++||
T Consensus 19 ~~~~~s-~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 19 FFPNWI-SGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCCEES-SSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CccEEC-CCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 378999 7886555 45699999999999987776665544 38999999 9999998876 78999999
Q ss_pred cCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeee-ecccccce--------------
Q 035558 113 LRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE-LQRHQASV-------------- 177 (253)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~i-------------- 177 (253)
+.+++..... .. ...+..++|+| +++.|+.+. ++. |++||+.++.. ... ..++...+
T Consensus 97 ~~~g~~~~~~-~l---~~~~~~~~~SP-DG~~la~~~-~~~-i~~~~~~~g~~-~~l~~~~~~~~v~~g~~~~v~~ee~~ 168 (719)
T 1z68_A 97 LSNGEFVRGN-EL---PRPIQYLCWSP-VGSKLAYVY-QNN-IYLKQRPGDPP-FQITFNGRENKIFNGIPDWVYEEEML 168 (719)
T ss_dssp TTTTEECCSS-CC---CSSBCCEEECS-STTCEEEEE-TTE-EEEESSTTSCC-EECCCCCBTTTEEESSCCHHHHHHTT
T ss_pred CCCCccccce-ec---CcccccceECC-CCCEEEEEE-CCe-EEEEeCCCCCc-EEEecCCCcCCeEcccccceeeeecc
Confidence 9987631001 11 13688999999 999998875 566 99999987653 221 12222222
Q ss_pred ---eEEEEecCCCCeEEEecCCC----------------------------------cEEEEeccCCCCC-CCCCCCCee
Q 035558 178 ---NAIAWAPHSSCHICTAGDDS----------------------------------QALIWDLSSMGQP-VEGGLDPIL 219 (253)
Q Consensus 178 ---~~~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~-~~~~~~~~~ 219 (253)
.+++|+||| ++|++++.|. .|++||+.++... ......+..
T Consensus 169 ~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 247 (719)
T 1z68_A 169 ATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAM 247 (719)
T ss_dssp CSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHH
T ss_pred cCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCcc
Confidence 489999999 6888877552 7889998876421 000001122
Q ss_pred eccCCCceeEEEEcCCCCceEEEEcCC----cEEEEE
Q 035558 220 AYTAGAEIEQLQWSSSQPDWVAIAFST----KLQILR 252 (253)
Q Consensus 220 ~~~~~~~v~~~~~~~~~~~~~~~~~~~----~i~vw~ 252 (253)
+.+|...+.+++|+|+++.+++....+ .|.+|+
T Consensus 248 ~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d 284 (719)
T 1z68_A 248 IASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD 284 (719)
T ss_dssp HHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred CCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence 346888899999999976444432222 366665
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.77 E-value=2.2e-16 Score=124.93 Aligned_cols=228 Identities=10% Similarity=0.022 Sum_probs=145.4
Q ss_pred CCceEEeec--C---cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558 4 KPDLLATSS--D---FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD 78 (253)
Q Consensus 4 ~~~~l~~~~--~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 78 (253)
+++.|+.++ + .|.+||+.++ +......++. ..+..+.|+ |+++.|+.++.++.|++||+.+++..
T Consensus 46 Dg~~l~~~~~~~g~~~l~~~d~~~g----~~~~lt~~~~-----~~~~~~~~s-pdg~~l~~~~~~~~l~~~d~~~g~~~ 115 (388)
T 3pe7_A 46 DGSKLLFGGAFDGPWNYYLLDLNTQ----VATQLTEGRG-----DNTFGGFLS-PDDDALFYVKDGRNLMRVDLATLEEN 115 (388)
T ss_dssp TSCEEEEEECTTSSCEEEEEETTTC----EEEECCCSSC-----BCSSSCEEC-TTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred CCCEEEEEEcCCCCceEEEEeCCCC----ceEEeeeCCC-----CCccceEEc-CCCCEEEEEeCCCeEEEEECCCCcce
Confidence 455555443 2 4888888876 5555556665 455577899 89999999999999999999998876
Q ss_pred eeeecccccEEEEEe--c-CCCeEEEE----------------------eCCCcEEEEEcCCCCCeeeeeccCCCCCCee
Q 035558 79 TQLIAHDKEVYDIAW--G-GVGVFASV----------------------SADGSVRVFDLRDKEHSTIIYESSEPDTPLV 133 (253)
Q Consensus 79 ~~~~~~~~~v~~~~~--~-~~~~l~~~----------------------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~ 133 (253)
..+..+...+....| + ++..++.. ..+..|.+||+.+++..... . +...+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~---~~~~~~ 191 (388)
T 3pe7_A 116 VVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL-Q---ENQWLG 191 (388)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE-E---ESSCEE
T ss_pred eeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee-c---CCcccc
Confidence 666655555544444 5 77777642 23467999999988643322 2 233688
Q ss_pred EEEeeCCCCCEEEEEEeCC-----CeEEEEECCCCCCCeeeecccc--cceeEEEEecCCCCeEEEec-CCC----cEEE
Q 035558 134 RLGWNKQDPRYMATIIMDS-----AKVVVLDIRFPTLPVVELQRHQ--ASVNAIAWAPHSSCHICTAG-DDS----QALI 201 (253)
Q Consensus 134 ~~~~~~~~~~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~-~dg----~i~i 201 (253)
.++|+|.+++.|+.....+ ..|.++|..... ...+..+. ..+..++|+|+| +.|+..+ .++ .|++
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~ 268 (388)
T 3pe7_A 192 HPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN--MRKVKTHAEGESCTHEFWVPDG-SALVYVSYLKGSPDRFIYS 268 (388)
T ss_dssp EEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC--CEESCCCCTTEEEEEEEECTTS-SCEEEEEEETTCCCEEEEE
T ss_pred ccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc--eEEeeeCCCCcccccceECCCC-CEEEEEecCCCCCcceEEE
Confidence 9999995567777666532 138888876543 34444444 357889999999 4554433 222 3999
Q ss_pred EeccCCCCCCCCCCCCeeeccCCC---ceeEEEEcCCCCceEEE---------EcCCcEEEEEC
Q 035558 202 WDLSSMGQPVEGGLDPILAYTAGA---EIEQLQWSSSQPDWVAI---------AFSTKLQILRV 253 (253)
Q Consensus 202 wd~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~---------~~~~~i~vw~l 253 (253)
||+.+++... .....++.. ....++|+|+|+.++.. ..+..|.+|++
T Consensus 269 ~d~~~g~~~~-----l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~ 327 (388)
T 3pe7_A 269 ADPETLENRQ-----LTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNM 327 (388)
T ss_dssp ECTTTCCEEE-----EEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEET
T ss_pred EecCCCceEE-----EEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEec
Confidence 9998876321 001111000 01223799999877743 44567888874
No 165
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.77 E-value=3.4e-16 Score=121.43 Aligned_cols=216 Identities=13% Similarity=0.007 Sum_probs=147.8
Q ss_pred EEEEEccCCccccceeeeec-CCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce-eeeee---------ec
Q 035558 15 LRVWRISDEDRRVELKSLLN-GNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA-VDTQL---------IA 83 (253)
Q Consensus 15 v~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~---------~~ 83 (253)
|.+||..++ +....+. ++. .....++++ ++++++++...++.|++||..... .+..+ ..
T Consensus 71 i~~~d~~~g----~~~~~~~~~~~-----~~p~gia~d-~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~ 140 (329)
T 3fvz_A 71 ILVIDPNNA----EILQSSGKNLF-----YLPHGLSID-TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQN 140 (329)
T ss_dssp EEEECTTTC----CEEEEECTTTC-----SSEEEEEEC-TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTT
T ss_pred EEEEECCCC----eEEeccCCCcc-----CCceEEEEC-CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCcc
Confidence 899998765 5444443 233 568899999 889988888889999999986542 34444 23
Q ss_pred ccccEEEEEec--CCCeEEEEe-CCCcEEEEEcCCCCCeeeeeccC-------CCCCCeeEEEeeCCC-CCEEEEEEeCC
Q 035558 84 HDKEVYDIAWG--GVGVFASVS-ADGSVRVFDLRDKEHSTIIYESS-------EPDTPLVRLGWNKQD-PRYMATIIMDS 152 (253)
Q Consensus 84 ~~~~v~~~~~~--~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~-~~~l~~~~~~~ 152 (253)
+-..+..++++ ++.++++.+ .++.|++||. .+.....+.... ..-.....++++| + +.++++...++
T Consensus 141 ~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~-~~g~l~v~d~~~~ 218 (329)
T 3fvz_A 141 HFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVP-HLDQLCVADRENG 218 (329)
T ss_dssp CCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEET-TTTEEEEEETTTT
T ss_pred ccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEEC-CCCEEEEEECCCC
Confidence 34468899998 466666765 6899999994 344322221111 1112478999999 6 55555555555
Q ss_pred CeEEEEECCCCCCCeeee--cccccceeEEEEecCCCCeEEE-------ecCCCcEEEEeccCCCCCCCCCCCCeee---
Q 035558 153 AKVVVLDIRFPTLPVVEL--QRHQASVNAIAWAPHSSCHICT-------AGDDSQALIWDLSSMGQPVEGGLDPILA--- 220 (253)
Q Consensus 153 ~~i~~~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~~~~~~~--- 220 (253)
. |++||..+++. +..+ ..+...+..++|+| + ..+.+ ...+..|++|+..+++... .+
T Consensus 219 ~-I~~~~~~~G~~-~~~~~~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~-------~~~~~ 287 (329)
T 3fvz_A 219 R-IQCFKTDTKEF-VREIKHASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIID-------VFKPV 287 (329)
T ss_dssp E-EEEEETTTCCE-EEEECCTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEE-------EECCS
T ss_pred E-EEEEECCCCcE-EEEEeccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEE-------EEcCC
Confidence 5 99999985542 5554 34556788999999 3 23333 3345699999998876432 22
Q ss_pred ccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 221 YTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 221 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
..+...+.+|+++|+|..+++...++.|++|++
T Consensus 288 ~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 288 RKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL 320 (329)
T ss_dssp SSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred CCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence 356677899999999976667778899999874
No 166
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.76 E-value=6.7e-17 Score=125.86 Aligned_cols=154 Identities=12% Similarity=0.054 Sum_probs=111.5
Q ss_pred EEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeeccc-ccEEEEEec-CCCeE-EEEeCCCcEEEEEcCCCCCeeeee
Q 035558 47 SFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHD-KEVYDIAWG-GVGVF-ASVSADGSVRVFDLRDKEHSTIIY 123 (253)
Q Consensus 47 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~-~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~ 123 (253)
.++++ +++.++++++.++.|++||+.+++.+..+..+. ..+..++|+ +++.+ ++...++.|.+||+.+++....+.
T Consensus 4 g~~~~-~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALK-AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCC-TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccc-CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 44566 778899999999999999999998887776443 257889999 88755 555678999999999876443332
Q ss_pred ccCCC---CCCeeEEEeeCCCCCEEEEEEeC------------CCeEEEEECCCCCC--CeeeecccccceeEEEEecCC
Q 035558 124 ESSEP---DTPLVRLGWNKQDPRYMATIIMD------------SAKVVVLDIRFPTL--PVVELQRHQASVNAIAWAPHS 186 (253)
Q Consensus 124 ~~~~~---~~~i~~~~~~~~~~~~l~~~~~~------------~~~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~ 186 (253)
..... ...+..++|+| +++++++++.+ +. |.+||+.+.+. .+..+. +...+.+++|+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~-i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg 159 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPR-LEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDG 159 (349)
T ss_dssp SCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCE-EEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTS
T ss_pred cccccccccccccceEECC-CCCEEEEEcccccccccccccCCCe-EEEEECCCccccceeeecc-CCCcccceeECCCC
Confidence 21110 12377899999 89999988865 55 99999987431 123333 33468899999999
Q ss_pred CCeEEEecCCCcEEEEeccCCC
Q 035558 187 SCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 187 ~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
+ +++++. .|.+||+.+++
T Consensus 160 -~-l~~~~~--~i~~~d~~~~~ 177 (349)
T 1jmx_B 160 -S-LYVAGP--DIYKMDVKTGK 177 (349)
T ss_dssp -C-EEEESS--SEEEECTTTCC
T ss_pred -c-EEEccC--cEEEEeCCCCc
Confidence 5 555543 49999998765
No 167
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.76 E-value=1.3e-15 Score=114.66 Aligned_cols=225 Identities=11% Similarity=-0.034 Sum_probs=149.0
Q ss_pred CCceEE-eec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 4 KPDLLA-TSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 4 ~~~~l~-~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
++++++ +.. + .|.+|+.... ........+. ..+.++++. ++++++++.. ++.|.+||.........
T Consensus 34 ~g~l~v~~~~~~~~i~~~~~~~~----~~~~~~~~~~-----~~p~~i~~~-~~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 34 AGNVYVTSEGMYGRVVKLATGST----GTTVLPFNGL-----YQPQGLAVD-GAGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp TCCEEEEECSSSCEEEEECC---------EECCCCSC-----CSCCCEEEC-TTCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CCCEEEEccCCCCcEEEecCCCc----ccceEeeCCc-----CCcceeEEC-CCCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 456666 533 4 8999987653 2111112222 457789998 7788666655 88999999876543322
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
.......+.++++. +++++++...++.|.+|+..+.... .. .......+..++++| +++++++...++. |.+||
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~--~~-~~~~~~~p~~i~~~~-~g~l~v~~~~~~~-i~~~~ 177 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT--VL-PFTGLNDPDGVAVDN-SGNVYVTDTDNNR-VVKLE 177 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE--EC-CCCSCCSCCCEEECT-TCCEEEEEGGGTE-EEEEC
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE--ee-ccccCCCceeEEEeC-CCCEEEEECCCCE-EEEEe
Confidence 11233568899999 8888888778889999976554322 11 112223678899999 7776666555566 99999
Q ss_pred CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558 160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW 239 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 239 (253)
...... ......+...+.+++++++| .++++...++.|.+|+........ ....+...+.++++++++..+
T Consensus 178 ~~~~~~-~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~~~-------~~~~~~~~p~~i~~~~~g~l~ 248 (270)
T 1rwi_B 178 AESNNQ-VVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTSTV-------LPFTGLNTPLAVAVDSDRTVY 248 (270)
T ss_dssp TTTCCE-EECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSCCEE-------CCCCSCSCEEEEEECTTCCEE
T ss_pred cCCCce-EeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCccee-------eccCCCCCceeEEECCCCCEE
Confidence 876442 22222233568899999998 677887788999999986543211 122334678999999999877
Q ss_pred EEEEcCCcEEEEEC
Q 035558 240 VAIAFSTKLQILRV 253 (253)
Q Consensus 240 ~~~~~~~~i~vw~l 253 (253)
++...++.|+++++
T Consensus 249 v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 249 VADRGNDRVVKLTS 262 (270)
T ss_dssp EEEGGGTEEEEECC
T ss_pred EEECCCCEEEEEcC
Confidence 78888999999874
No 168
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.75 E-value=6.1e-17 Score=138.56 Aligned_cols=199 Identities=10% Similarity=0.113 Sum_probs=134.1
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeeccccc-----EEEEEec-CCCeEEEEeCC---------Cc
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKE-----VYDIAWG-GVGVFASVSAD---------GS 107 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-----v~~~~~~-~~~~l~~~~~d---------g~ 107 (253)
....++.|+ +++.+++++ |+.|++||+.+++....+.+|... ..+++|+ +++.|+.++.+ +.
T Consensus 17 ~~~~~~~w~-~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 17 LKLYSLRWI-SDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCCEEEC-SSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred ccccccEEC-CCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 446689999 888888886 899999999999877777766533 2447889 99999998876 56
Q ss_pred EEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccce----------
Q 035558 108 VRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASV---------- 177 (253)
Q Consensus 108 i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i---------- 177 (253)
+.+||+.+++.. ....+...+...+|+| +++.||.+. ++. |++||+.++........++...+
T Consensus 94 ~~~~d~~~~~~~----~l~~~~~~~~~~~~SP-dG~~la~~~-~~~-i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ 166 (740)
T 4a5s_A 94 YDIYDLNKRQLI----TEERIPNNTQWVTWSP-VGHKLAYVW-NND-IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYE 166 (740)
T ss_dssp EEEEETTTTEEC----CSSCCCTTEEEEEECS-STTCEEEEE-TTE-EEEESSTTSCCEECCSCCBTTTEEESBCCHHHH
T ss_pred EEEEECCCCcEE----EcccCCCcceeeEECC-CCCEEEEEE-CCe-EEEEECCCCceEEEcCCCCccceecCccccccc
Confidence 679999988632 2234455799999999 999998874 566 99999987653222222332222
Q ss_pred -------eEEEEecCCCCeEEEecCCC------------------------------------cEEEEeccC---CCCCC
Q 035558 178 -------NAIAWAPHSSCHICTAGDDS------------------------------------QALIWDLSS---MGQPV 211 (253)
Q Consensus 178 -------~~~~~~~~~~~~l~~~~~dg------------------------------------~i~iwd~~~---~~~~~ 211 (253)
..+.|+||| +.|+.++.|. .|++||+.+ +....
T Consensus 167 ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~ 245 (740)
T 4a5s_A 167 EEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT 245 (740)
T ss_dssp HHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC
T ss_pred chhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce
Confidence 358999999 6787765332 466777776 42110
Q ss_pred -CCCCCCeeeccCCCceeEEEEcCCCCceEEEEc-C---CcEEEEE
Q 035558 212 -EGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAF-S---TKLQILR 252 (253)
Q Consensus 212 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~---~~i~vw~ 252 (253)
.....+....+|...+..++|+|+++.++.... + ..|.+|+
T Consensus 246 ~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d 291 (740)
T 4a5s_A 246 SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICD 291 (740)
T ss_dssp EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEE
T ss_pred EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEE
Confidence 000000011137778999999999985554322 2 2577776
No 169
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.75 E-value=2.2e-15 Score=116.81 Aligned_cols=221 Identities=12% Similarity=0.094 Sum_probs=147.5
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEe
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAW 93 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 93 (253)
.++.| .. +....+..+. ..+.+++|+ +++++++++..++.|.+||.++++.......+...+.++++
T Consensus 28 ~~~~~--~~-----~~~~~~~~~~-----~~~~~~~~~-~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~ 94 (333)
T 2dg1_A 28 ELQTI--TA-----EPWLEISKKG-----LQLEGLNFD-RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKI 94 (333)
T ss_dssp GSCEE--EC-----EEEEEEESSC-----CCEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEE
T ss_pred cCccc--cc-----ceeEEEeccC-----ccccCcEEC-CCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEE
Confidence 77777 22 3344555555 567899999 78888888888999999999887755544346678999999
Q ss_pred c-CCCeEEEEeCC----CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe------CCCeEEEEECCC
Q 035558 94 G-GVGVFASVSAD----GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM------DSAKVVVLDIRF 162 (253)
Q Consensus 94 ~-~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------~~~~i~~~d~~~ 162 (253)
+ +++++++...+ +.|.+||..+......+.. ......+..++++| +++++++... .+. |..+|...
T Consensus 95 ~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~-l~~~~~~~ 171 (333)
T 2dg1_A 95 HKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED-LSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGG-VYYVSPDF 171 (333)
T ss_dssp CTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS-SSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEE-EEEECTTS
T ss_pred CCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc-CccCCcccceEECC-CCCEEEEeccccccCCCce-EEEEeCCC
Confidence 9 88888877666 6899999987764322221 12334789999999 7877776543 233 66666554
Q ss_pred CCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCC-CCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558 163 PTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEG-GLDPILAYTAGAEIEQLQWSSSQPDWVA 241 (253)
Q Consensus 163 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 241 (253)
.. ...+..+...+..++|+|++..++++.+.++.|.+||+......... .............+..+++++++..+++
T Consensus 172 ~~--~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~ 249 (333)
T 2dg1_A 172 RT--VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVA 249 (333)
T ss_dssp CC--EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEE
T ss_pred CE--EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEE
Confidence 32 33333334467899999998424455567899999999642211100 0000000111246788999999987777
Q ss_pred EEcCCcEEEEE
Q 035558 242 IAFSTKLQILR 252 (253)
Q Consensus 242 ~~~~~~i~vw~ 252 (253)
...++.|.+|+
T Consensus 250 ~~~~~~v~~~d 260 (333)
T 2dg1_A 250 MYGQGRVLVFN 260 (333)
T ss_dssp EETTTEEEEEC
T ss_pred EcCCCEEEEEC
Confidence 77778899886
No 170
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.74 E-value=1.1e-15 Score=120.84 Aligned_cols=215 Identities=8% Similarity=0.021 Sum_probs=143.9
Q ss_pred EEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC-CC--eEEEEeccCceeeeeeecccccEEEEEec
Q 035558 18 WRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI-DT--TCTIWDIEREAVDTQLIAHDKEVYDIAWG 94 (253)
Q Consensus 18 w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 94 (253)
++..++ .....+..|....+...+...+|+ |+++.|+.++. +| .|.+||+.+++......++...+..+.|+
T Consensus 15 ~~~~~g----~~~~~lt~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~s 89 (388)
T 3pe7_A 15 QDASTG----AQVTRLTPPDVTCHRNYFYQKCFT-RDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLS 89 (388)
T ss_dssp ECTTTC----CEEEECSCTTSCEECCCTTSCCBC-TTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEEC
T ss_pred ecCCCC----cceEEecCCcccccchhhcCccCC-CCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEc
Confidence 445554 555666666522111222337899 89998888887 66 48889999888777666666666677899
Q ss_pred -CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEE--eeCCCCCEEEEEE----------------------
Q 035558 95 -GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLG--WNKQDPRYMATII---------------------- 149 (253)
Q Consensus 95 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~l~~~~---------------------- 149 (253)
+++.|+.++.++.|++||+.+++...... .+...+.... ++| ++.+++...
T Consensus 90 pdg~~l~~~~~~~~l~~~d~~~g~~~~~~~---~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 90 PDDDALFYVKDGRNLMRVDLATLEENVVYQ---VPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEEEEE---CCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcceeeee---chhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccC
Confidence 99999999999999999999887443332 2222343333 477 787776432
Q ss_pred eCCCeEEEEECCCCCCCeeeecccccceeEEEEec-CCCCeEEEecCC------CcEEEEeccCCCCCCCCCCCCeeecc
Q 035558 150 MDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAP-HSSCHICTAGDD------SQALIWDLSSMGQPVEGGLDPILAYT 222 (253)
Q Consensus 150 ~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~ 222 (253)
.+.. |.+||+.+++ ...+..+...+..++|+| ++ +.|+..+.+ ..|.++|+..... ..+..
T Consensus 166 ~~~~-l~~~d~~~g~--~~~l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~--------~~l~~ 233 (388)
T 3pe7_A 166 PCCR-LMRVDLKTGE--STVILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNM--------RKVKT 233 (388)
T ss_dssp CCEE-EEEEETTTCC--EEEEEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCC--------EESCC
T ss_pred Ccce-EEEEECCCCc--eEEeecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCce--------EEeee
Confidence 1233 9999998764 455556677789999999 98 577665543 3777777765432 12333
Q ss_pred CC--CceeEEEEcCCCCceEEEEcC-C----cEEEEEC
Q 035558 223 AG--AEIEQLQWSSSQPDWVAIAFS-T----KLQILRV 253 (253)
Q Consensus 223 ~~--~~v~~~~~~~~~~~~~~~~~~-~----~i~vw~l 253 (253)
+. ..+..++|+|+|+.++..+.. + .|.+|++
T Consensus 234 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 271 (388)
T 3pe7_A 234 HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADP 271 (388)
T ss_dssp CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECT
T ss_pred CCCCcccccceECCCCCEEEEEecCCCCCcceEEEEec
Confidence 33 367889999999977644432 2 2888764
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.73 E-value=5.5e-16 Score=131.03 Aligned_cols=194 Identities=12% Similarity=0.044 Sum_probs=126.8
Q ss_pred CCeeEEEecCCCCCEEEEEeCC----------CeEEEEeccC------ceeeeeee-cccccEEEEEec-CCCeEEEEeC
Q 035558 43 GPLTSFDWNEAEPRRIGTSSID----------TTCTIWDIER------EAVDTQLI-AHDKEVYDIAWG-GVGVFASVSA 104 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~d----------g~i~vwd~~~------~~~~~~~~-~~~~~v~~~~~~-~~~~l~~~~~ 104 (253)
..+.+++|+ |+++.|+.++.+ ..|++||+.+ ++. ..+. .+...+..++|+ +++.|+.++.
T Consensus 130 ~~~~~~~~s-pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~ 207 (662)
T 3azo_A 130 LRWADPVLL-PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAW 207 (662)
T ss_dssp EEEEEEEEE-TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEE
T ss_pred ccccCcEEC-CCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEEC
Confidence 578899999 899999988876 5899999987 553 3344 556778889999 9999998875
Q ss_pred CC--------cEEEEEcC-CCC--CeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC-eEEEEECCCCCCCeeeecc
Q 035558 105 DG--------SVRVFDLR-DKE--HSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA-KVVVLDIRFPTLPVVELQR 172 (253)
Q Consensus 105 dg--------~i~i~d~~-~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~-~i~~~d~~~~~~~~~~~~~ 172 (253)
++ .|++||+. ++. ....+.. .+...+..++|+| ++++++++..++. .|.+||+.+.+ ...+..
T Consensus 208 ~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~--~~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~~~~~~~--~~~l~~ 282 (662)
T 3azo_A 208 DHPRMPWEGTELKTARVTEDGRFADTRTLLG--GPEEAIAQAEWAP-DGSLIVATDRTGWWNLHRVDPATGA--ATQLCR 282 (662)
T ss_dssp CTTCCTTTCEEEEEEEECTTSCEEEEEEEEE--ETTBCEEEEEECT-TSCEEEEECTTSSCEEEEECTTTCC--EEESSC
T ss_pred CCCCCCCCCcEEEEEEECCCCcccccEEeCC--CCCceEcceEECC-CCeEEEEECCCCCeEEEEEECCCCc--eeeccc
Confidence 53 79999998 452 2222222 2344789999999 7887777666663 26666765433 233322
Q ss_pred cc-cc--------eeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEE-EEcCCCCceEEE
Q 035558 173 HQ-AS--------VNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQL-QWSSSQPDWVAI 242 (253)
Q Consensus 173 ~~-~~--------i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~ 242 (253)
+. .. +..++|+|++ +++++++. +.++||.+....... ..+..+...+..+ +++++.-.+++.
T Consensus 283 ~~~~~~~p~w~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~d~~~~~~------~~l~~~~~~~~~~~s~~~~~~~~~~~ 354 (662)
T 3azo_A 283 REEEFAGPLWTPGMRWFAPLANG-LIAVVHGK-GAAVLGILDPESGEL------VDAAGPWTEWAATLTVSGTRAVGVAA 354 (662)
T ss_dssp CSSBSSCCCCSTTCCSEEECTTS-CEEEEEBS-SSCEEEEEETTTTEE------EECCSSCCEEEEEEEEETTEEEEEEE
T ss_pred ccccccCccccccCceEeEeCCC-EEEEEEEc-CccEEEEEECCCCcE------EEecCCCCeEEEEEecCCCEEEEEEc
Confidence 22 21 4678899998 68899988 999999554321111 2444566677766 444332222234
Q ss_pred EcCCcEEEE
Q 035558 243 AFSTKLQIL 251 (253)
Q Consensus 243 ~~~~~i~vw 251 (253)
+.+....+|
T Consensus 355 ~~~~~~~i~ 363 (662)
T 3azo_A 355 SPRTAYEVV 363 (662)
T ss_dssp ETTEEEEEE
T ss_pred CCCCCCEEE
Confidence 444444555
No 172
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.73 E-value=9.4e-16 Score=120.39 Aligned_cols=212 Identities=9% Similarity=0.046 Sum_probs=133.5
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe----------CCCeEEEEeccCceeeeeeec
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS----------IDTTCTIWDIEREAVDTQLIA 83 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~ 83 (253)
.|.+||..++ +....+..+. .+ .++|+ +++++++++. .++.|.+||..+++.+..+..
T Consensus 32 ~v~v~D~~t~----~~~~~i~~g~-----~p--~i~~s-pdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~ 99 (361)
T 2oiz_A 32 RVHVYDYTNG----KFLGMVPTAF-----NG--HVQVS-NDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISL 99 (361)
T ss_dssp EEEEEETTTC----CEEEEEECCE-----EE--EEEEC-TTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEE
T ss_pred eEEEEECCCC----eEEEEecCCC-----CC--ceEEC-CCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEc
Confidence 8999998886 6666776665 44 89999 8999998886 367899999998888777753
Q ss_pred c------cccEEEEEec-CCCeEEEEeC--CCcEEEEEcCCCCCeee-eeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC
Q 035558 84 H------DKEVYDIAWG-GVGVFASVSA--DGSVRVFDLRDKEHSTI-IYESSEPDTPLVRLGWNKQDPRYMATIIMDSA 153 (253)
Q Consensus 84 ~------~~~v~~~~~~-~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 153 (253)
. ......++++ ++++|+++.. ++.|.+||+.+.+.... +.. . ....+.+.|.....+++.+.++.
T Consensus 100 ~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~---~--~~~~v~~~p~~~~~~~~~~~dg~ 174 (361)
T 2oiz_A 100 PPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA---A--GCWSVIPQPNRPRSFMTICGDGG 174 (361)
T ss_dssp CTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG---T--TEEEEEECTTSSSEEEEEETTSS
T ss_pred CccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC---C--CcceeEEcCCCCeeEEEECCCCc
Confidence 2 2346778999 9999988864 68999999998864333 211 0 11112223312223333333333
Q ss_pred -----------------------------------------------eEEEEECCCCCCCe-eeecc------c----cc
Q 035558 154 -----------------------------------------------KVVVLDIRFPTLPV-VELQR------H----QA 175 (253)
Q Consensus 154 -----------------------------------------------~i~~~d~~~~~~~~-~~~~~------~----~~ 175 (253)
.+.++|+......+ ..+.. + ..
T Consensus 175 ~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 254 (361)
T 2oiz_A 175 LLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPG 254 (361)
T ss_dssp EEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEEC
T ss_pred EEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccC
Confidence 14444443221100 00000 0 01
Q ss_pred ceeEEEEecCCCCeEEEecC-----------CCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEc
Q 035558 176 SVNAIAWAPHSSCHICTAGD-----------DSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAF 244 (253)
Q Consensus 176 ~i~~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 244 (253)
....++|+|++. .++++.. .+.|.+||+.+.+... ....+. +.+++|+|+++++++++.
T Consensus 255 g~~~~a~~~dg~-~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~-------~i~~~~--p~~ia~spdg~~l~v~n~ 324 (361)
T 2oiz_A 255 GYNLVGLHRASG-RMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVA-------RIPGRD--ALSMTIDQQRNLMLTLDG 324 (361)
T ss_dssp CSSCEEEETTTT-EEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEE-------EEECTT--CCEEEEETTTTEEEEECS
T ss_pred CeeEEEEecCCC-eEEEEEccCCCcccccCCCceEEEEECCCCcEEE-------EEecCC--eeEEEECCCCCEEEEeCC
Confidence 111278999984 5544322 3589999998876432 333444 999999999997777765
Q ss_pred CCcEEEEEC
Q 035558 245 STKLQILRV 253 (253)
Q Consensus 245 ~~~i~vw~l 253 (253)
+.|.+|++
T Consensus 325 -~~v~v~D~ 332 (361)
T 2oiz_A 325 -GNVNVYDI 332 (361)
T ss_dssp -SCEEEEEC
T ss_pred -CeEEEEEC
Confidence 99999984
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.72 E-value=8.4e-16 Score=129.93 Aligned_cols=215 Identities=7% Similarity=-0.040 Sum_probs=141.1
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCee---------EEEecC-CCCCE-EEEEeC-CCeEEEEecc--C-ceee
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLT---------SFDWNE-AEPRR-IGTSSI-DTTCTIWDIE--R-EAVD 78 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~~~~~-~~~~~-l~~~~~-dg~i~vwd~~--~-~~~~ 78 (253)
...||....+ .....+..+. ..+. ...|+. |+++. |+.++. +..|+++++. . ++ .
T Consensus 48 ~~~l~~~~~~----~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~ 117 (662)
T 3azo_A 48 RATLVRRRAD----GAEESALPAP-----WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-P 117 (662)
T ss_dssp EEEEEEECTT----SCEEESSCTT-----CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-C
T ss_pred cEEEEEECCC----CCcceeCCCC-----ccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-C
Confidence 7888886433 3344455554 3333 455552 67877 665543 5677777775 2 33 3
Q ss_pred eeeec-----ccccEEEEEec-CCCeEEEEeCC----------CcEEEEEcCC------CCCeeeeeccCCCCCCeeEEE
Q 035558 79 TQLIA-----HDKEVYDIAWG-GVGVFASVSAD----------GSVRVFDLRD------KEHSTIIYESSEPDTPLVRLG 136 (253)
Q Consensus 79 ~~~~~-----~~~~v~~~~~~-~~~~l~~~~~d----------g~i~i~d~~~------~~~~~~~~~~~~~~~~i~~~~ 136 (253)
..+.. |...+.+++|+ +++.|++++.+ ..|++||+.+ ++. ..+.. .+...+..++
T Consensus 118 ~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~--~~~~~~~~~~ 194 (662)
T 3azo_A 118 RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSD--DAHRFVTGPR 194 (662)
T ss_dssp EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSC--SCSSEECCCE
T ss_pred EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEe--cCCCcccCce
Confidence 34444 66788999999 99999998877 5899999987 432 22220 2234778899
Q ss_pred eeCCCCCEEEEEEeCC-------CeEEEEECC-CCC--CCeeeecccccceeEEEEecCCCCeEEEecCCC--cEEEEec
Q 035558 137 WNKQDPRYMATIIMDS-------AKVVVLDIR-FPT--LPVVELQRHQASVNAIAWAPHSSCHICTAGDDS--QALIWDL 204 (253)
Q Consensus 137 ~~~~~~~~l~~~~~~~-------~~i~~~d~~-~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~i~iwd~ 204 (253)
|+| +++.|+.++.+. ..|++||+. ++. ........|...+..++|+|+| +++++++.++ .|.+||+
T Consensus 195 ~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg-~l~~~~~~~~~~~l~~~~~ 272 (662)
T 3azo_A 195 LSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDG-SLIVATDRTGWWNLHRVDP 272 (662)
T ss_dssp ECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTS-CEEEEECTTSSCEEEEECT
T ss_pred ECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCC-eEEEEECCCCCeEEEEEEC
Confidence 999 999999887654 359999998 441 2233334456789999999999 5888888888 5555555
Q ss_pred cCCCCCCCCCCCCeeeccC-CC--------ceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 205 SSMGQPVEGGLDPILAYTA-GA--------EIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~-~~--------~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
.+++.. .+..+ .. .+..++|+|+++.++++.. +..++|.
T Consensus 273 ~~~~~~--------~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 320 (662)
T 3azo_A 273 ATGAAT--------QLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGI 320 (662)
T ss_dssp TTCCEE--------ESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred CCCcee--------ecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEE
Confidence 444311 11111 11 1567899999986667777 8888884
No 174
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.71 E-value=1.5e-15 Score=120.31 Aligned_cols=223 Identities=10% Similarity=0.002 Sum_probs=137.2
Q ss_pred CCceEEee-c---C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558 4 KPDLLATS-S---D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD 78 (253)
Q Consensus 4 ~~~~l~~~-~---~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 78 (253)
+|+.|+.. . + .|.+|++..+ +......++. .....+.|+ |+++.|+.++.++.|++||+.+++..
T Consensus 46 dG~~l~~~~~~~g~~~l~~~d~~~~----~~~~l~~~~~-----~~~~~~~~s-pdg~~l~~~~~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 46 DGKKLLFAGDFDGNRNYYLLNLETQ----QAVQLTEGKG-----DNTFGGFIS-TDERAFFYVKNELNLMKVDLETLEEQ 115 (396)
T ss_dssp TSCEEEEEECTTSSCEEEEEETTTT----EEEECCCSSC-----BCTTTCEEC-TTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred CCCEEEEEEecCCCceEEEEECCCC----cEEEeecCCC-----CccccceEC-CCCCEEEEEEcCCcEEEEECCCCCcE
Confidence 45555443 2 2 6888898875 4333333332 223347899 89999999999999999999988765
Q ss_pred eeeecccccEEE---E----------------Eec-CCCeEEEE-----eCCCcEEEEEcCCCCCeeeeeccCCCCCCee
Q 035558 79 TQLIAHDKEVYD---I----------------AWG-GVGVFASV-----SADGSVRVFDLRDKEHSTIIYESSEPDTPLV 133 (253)
Q Consensus 79 ~~~~~~~~~v~~---~----------------~~~-~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~ 133 (253)
.....+...... + .|+ +++.++.. ..+..|.+||+.+++..... .+...+.
T Consensus 116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~----~~~~~~~ 191 (396)
T 3c5m_A 116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH----QDTAWLG 191 (396)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE----EESSCEE
T ss_pred EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec----cCCcccc
Confidence 544433332222 2 234 44444433 35668999999887643332 2234788
Q ss_pred EEEeeCCCCCEEEEEEeCC-----CeEEEEECCCCCCCeeeeccc--ccceeEEEEecCCCCeEEEecCC-----CcEEE
Q 035558 134 RLGWNKQDPRYMATIIMDS-----AKVVVLDIRFPTLPVVELQRH--QASVNAIAWAPHSSCHICTAGDD-----SQALI 201 (253)
Q Consensus 134 ~~~~~~~~~~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~~~~d-----g~i~i 201 (253)
.+.|+|.++..|+..+.++ ..|.+||+.... ...+..+ ...+..++|+|++ ++|+.++.+ +.|++
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~ 268 (396)
T 3c5m_A 192 HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN--VRKIKEHAEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYK 268 (396)
T ss_dssp EEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC--CEESSCCCTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEE
T ss_pred cceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc--eeEeeccCCCccccceEECCCC-CEEEEEecCCCCccceEEE
Confidence 9999995566666555432 238899986543 2333333 2357889999999 566655433 44999
Q ss_pred EeccCCCCCCCCCCCCeeeccCCCceeEEEEcC-CCCceEEEE----------------cCCcEEEEEC
Q 035558 202 WDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS-SQPDWVAIA----------------FSTKLQILRV 253 (253)
Q Consensus 202 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~----------------~~~~i~vw~l 253 (253)
||+.+++... ..... ... +.|+| +++.++..+ .+..+.+|++
T Consensus 269 ~d~~~g~~~~--------l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 269 ANPETLENEE--------VMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp ECTTTCCEEE--------EEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred EECCCCCeEE--------eeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 9998765321 11111 122 89999 998665543 2367888864
No 175
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.71 E-value=6.3e-14 Score=108.61 Aligned_cols=216 Identities=7% Similarity=-0.003 Sum_probs=140.0
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC----CeEEEEeccCcee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID----TTCTIWDIEREAV 77 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~ 77 (253)
++++++++. + .|.+||..++ +.......+. ..+.+++++ ++++++++...+ +.|.+||.++++.
T Consensus 55 ~g~l~~~~~~~~~i~~~d~~~~----~~~~~~~~~~-----~~~~~i~~~-~dg~l~v~~~~~~~~~~~i~~~d~~~~~~ 124 (333)
T 2dg1_A 55 QGQLFLLDVFEGNIFKINPETK----EIKRPFVSHK-----ANPAAIKIH-KDGRLFVCYLGDFKSTGGIFAATENGDNL 124 (333)
T ss_dssp TSCEEEEETTTCEEEEECTTTC----CEEEEEECSS-----SSEEEEEEC-TTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred CCCEEEEECCCCEEEEEeCCCC----cEEEEeeCCC-----CCcceEEEC-CCCcEEEEeCCCCCCCceEEEEeCCCCEE
Confidence 566776665 4 8999998875 4333333344 679999999 788888777666 6899999987764
Q ss_pred eeeee--cccccEEEEEec-CCCeEEEEeC------CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558 78 DTQLI--AHDKEVYDIAWG-GVGVFASVSA------DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI 148 (253)
Q Consensus 78 ~~~~~--~~~~~v~~~~~~-~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 148 (253)
...+. .+...+.+++++ +++++++... .+.|..+|..+++... +.. ....+..++|+| +++.++++
T Consensus 125 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~---~~~~~~~i~~~~-dg~~l~v~ 199 (333)
T 2dg1_A 125 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQ---NISVANGIALST-DEKVLWVT 199 (333)
T ss_dssp EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEE---EESSEEEEEECT-TSSEEEEE
T ss_pred EEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eec---CCCcccceEECC-CCCEEEEE
Confidence 43332 234578999999 8887776654 2456666655444222 211 112578899999 78766555
Q ss_pred E-eCCCeEEEEECCCCCCCeee--------ecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCee
Q 035558 149 I-MDSAKVVVLDIRFPTLPVVE--------LQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPIL 219 (253)
Q Consensus 149 ~-~~~~~i~~~d~~~~~~~~~~--------~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 219 (253)
. .++. |.+||+......+.. +..+ ..+..+++++++ +++++...++.|.+||.. ++... .
T Consensus 200 ~~~~~~-i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~~-g~~~~-------~ 268 (333)
T 2dg1_A 200 ETTANR-LHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDD-NLYVAMYGQGRVLVFNKR-GYPIG-------Q 268 (333)
T ss_dssp EGGGTE-EEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTC-CEEEEEETTTEEEEECTT-SCEEE-------E
T ss_pred eCCCCe-EEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCC-CEEEEEcCCCEEEEECCC-CCEEE-------E
Confidence 4 4555 999999643222221 1112 367889999998 577777778999999984 33211 1
Q ss_pred ecc------CCCceeEEEEcCCCCceEEEEcC
Q 035558 220 AYT------AGAEIEQLQWSSSQPDWVAIAFS 245 (253)
Q Consensus 220 ~~~------~~~~v~~~~~~~~~~~~~~~~~~ 245 (253)
... |...+.+++|+|++..++.++.+
T Consensus 269 ~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 269 ILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 111 22368999999998666655444
No 176
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.70 E-value=1.3e-14 Score=110.72 Aligned_cols=214 Identities=7% Similarity=-0.078 Sum_probs=139.2
Q ss_pred CCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558 2 CQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT 79 (253)
Q Consensus 2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 79 (253)
|+...+++++. + .|..|+... . ...+..+. ..+.+++++ ++++++++...++.|.+||..+++...
T Consensus 37 ~~g~~l~~~~~~~~~i~~~~~~~-----~-~~~~~~~~-----~~~~~l~~~-~dg~l~v~~~~~~~i~~~d~~~g~~~~ 104 (296)
T 3e5z_A 37 PARSAVIFSDVRQNRTWAWSDDG-----Q-LSPEMHPS-----HHQNGHCLN-KQGHLIACSHGLRRLERQREPGGEWES 104 (296)
T ss_dssp GGGTEEEEEEGGGTEEEEEETTS-----C-EEEEESSC-----SSEEEEEEC-TTCCEEEEETTTTEEEEECSTTCCEEE
T ss_pred CCCCEEEEEeCCCCEEEEEECCC-----C-eEEEECCC-----CCcceeeEC-CCCcEEEEecCCCeEEEEcCCCCcEEE
Confidence 33333666665 3 999999887 3 44455555 678999999 788888777667899999997776443
Q ss_pred eeecc----cccEEEEEec-CCCeEEEEeC-----------------CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEe
Q 035558 80 QLIAH----DKEVYDIAWG-GVGVFASVSA-----------------DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGW 137 (253)
Q Consensus 80 ~~~~~----~~~v~~~~~~-~~~~l~~~~~-----------------dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~ 137 (253)
..... ...+.+++++ +++++++.+. .+.|..++.. ++ ...+. ........++|
T Consensus 105 ~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~---~~~~~~~gi~~ 179 (296)
T 3e5z_A 105 IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPI---RDRVKPNGLAF 179 (296)
T ss_dssp EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEE---CCCSSEEEEEE
T ss_pred EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEee---cCCCCCccEEE
Confidence 32211 1345679999 8888887321 2345555544 32 22222 23336788999
Q ss_pred eCCCCCEEEEEEeCCCeEEEEECCCCCCC---eeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCC
Q 035558 138 NKQDPRYMATIIMDSAKVVVLDIRFPTLP---VVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGG 214 (253)
Q Consensus 138 ~~~~~~~l~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 214 (253)
+| +++.+++.+.++. |.+||+...... ...+..+...+.+++++++| +++++. ++.|.+||.. ++..
T Consensus 180 s~-dg~~lv~~~~~~~-i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~--~~~v~~~~~~-g~~~---- 249 (296)
T 3e5z_A 180 LP-SGNLLVSDTGDNA-THRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGG-LIWASA--GDGVHVLTPD-GDEL---- 249 (296)
T ss_dssp CT-TSCEEEEETTTTE-EEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTS-CEEEEE--TTEEEEECTT-SCEE----
T ss_pred CC-CCCEEEEeCCCCe-EEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCC-CEEEEc--CCeEEEECCC-CCEE----
Confidence 99 8888855555555 999998732221 12223345567789999999 555555 8899999986 3321
Q ss_pred CCCeeeccCCCceeEEEE-cCCCCceEEEEcCC
Q 035558 215 LDPILAYTAGAEIEQLQW-SSSQPDWVAIAFST 246 (253)
Q Consensus 215 ~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~ 246 (253)
.....+.. +.+++| .|+++.|.+++.++
T Consensus 250 ---~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~ 278 (296)
T 3e5z_A 250 ---GRVLTPQT-TSNLCFGGPEGRTLYMTVSTE 278 (296)
T ss_dssp ---EEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred ---EEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence 23334445 899999 58887677666653
No 177
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.70 E-value=2.1e-14 Score=111.26 Aligned_cols=223 Identities=7% Similarity=-0.083 Sum_probs=148.7
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
++.++++.. + .|.+||..+. +.+..+... .....++++ +++..+++...++.|.+||.++++....+
T Consensus 53 ~~~lyv~~~~~~~v~viD~~t~----~~~~~i~~~------~~p~~i~~~-~~g~lyv~~~~~~~v~~iD~~t~~~~~~i 121 (328)
T 3dsm_A 53 DGIGWIVVNNSHVIFAIDINTF----KEVGRITGF------TSPRYIHFL-SDEKAYVTQIWDYRIFIINPKTYEITGYI 121 (328)
T ss_dssp TTEEEEEEGGGTEEEEEETTTC----CEEEEEECC------SSEEEEEEE-ETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred CCEEEEEEcCCCEEEEEECccc----EEEEEcCCC------CCCcEEEEe-CCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence 344555555 3 9999999987 666666433 467889998 66755555447899999999999877766
Q ss_pred eccc-----ccEEEEEecCCCeEEEEe--CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC---
Q 035558 82 IAHD-----KEVYDIAWGGVGVFASVS--ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMD--- 151 (253)
Q Consensus 82 ~~~~-----~~v~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~--- 151 (253)
.... .....+++. +..++.+. .++.|.++|..+.+....+... .....++++| ++++++++..+
T Consensus 122 ~~g~~~~~~~~p~~i~~~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g----~~p~~i~~~~-dG~l~v~~~~~~~~ 195 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQY-GKYVYVNCWSYQNRILKIDTETDKVVDELTIG----IQPTSLVMDK-YNKMWTITDGGYEG 195 (328)
T ss_dssp ECTTCCTTTCBCCCEEEE-TTEEEEEECTTCCEEEEEETTTTEEEEEEECS----SCBCCCEECT-TSEEEEEBCCBCTT
T ss_pred EcCCccccCCCcceEEEE-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC----CCccceEEcC-CCCEEEEECCCccC
Confidence 5322 145566664 44444444 4889999999988754444321 1456788998 78776666544
Q ss_pred -------CCeEEEEECCCCCCCeeeeccc-ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC
Q 035558 152 -------SAKVVVLDIRFPTLPVVELQRH-QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA 223 (253)
Q Consensus 152 -------~~~i~~~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 223 (253)
+. |.++|..+.+. ...+... ......++|+|++ ++|+++.. .|.+||..+++... .......
T Consensus 196 ~~~~~~~~~-v~~id~~t~~v-~~~~~~~~g~~p~~la~~~d~-~~lyv~~~--~v~~~d~~t~~~~~-----~~~~~~~ 265 (328)
T 3dsm_A 196 SPYGYEAPS-LYRIDAETFTV-EKQFKFKLGDWPSEVQLNGTR-DTLYWINN--DIWRMPVEADRVPV-----RPFLEFR 265 (328)
T ss_dssp CSSCBCCCE-EEEEETTTTEE-EEEEECCTTCCCEEEEECTTS-CEEEEESS--SEEEEETTCSSCCS-----SCSBCCC
T ss_pred CccccCCce-EEEEECCCCeE-EEEEecCCCCCceeEEEecCC-CEEEEEcc--EEEEEECCCCceee-----eeeecCC
Confidence 45 99999987552 3344321 2367899999998 47776654 89999998765321 0011112
Q ss_pred CCceeEEEEcCCCCceE-EE----EcCCcEEEEEC
Q 035558 224 GAEIEQLQWSSSQPDWV-AI----AFSTKLQILRV 253 (253)
Q Consensus 224 ~~~v~~~~~~~~~~~~~-~~----~~~~~i~vw~l 253 (253)
......++++|++..+. +. ..++.|.+|+.
T Consensus 266 ~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 266 DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP 300 (328)
T ss_dssp SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred CCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence 56788999999544455 44 46778888863
No 178
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.69 E-value=1.6e-14 Score=112.06 Aligned_cols=201 Identities=9% Similarity=0.007 Sum_probs=138.1
Q ss_pred CCeeEEEecCCCCCEEEEEeCC------------------------CeEEEEeccCceeeeeee-cccccEEEEEec-CC
Q 035558 43 GPLTSFDWNEAEPRRIGTSSID------------------------TTCTIWDIEREAVDTQLI-AHDKEVYDIAWG-GV 96 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~d------------------------g~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~-~~ 96 (253)
..+.+++++ ++++++++...+ +.|.+||..+++....+. ++-..+..++++ ++
T Consensus 24 ~~v~~va~d-~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 24 GQVSGVALD-SKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp SCEEEEEEC-TTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred CCceEEEEC-CCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 679999999 889988888777 479999999888766554 344578999999 89
Q ss_pred CeEEEEeCCCcEEEEEcCCCC-Ceeeeecc------CCCCCCeeEEEeeCCCCCEEEEEE-eCCCeEEEEECCCCCCCee
Q 035558 97 GVFASVSADGSVRVFDLRDKE-HSTIIYES------SEPDTPLVRLGWNKQDPRYMATII-MDSAKVVVLDIRFPTLPVV 168 (253)
Q Consensus 97 ~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~------~~~~~~i~~~~~~~~~~~~l~~~~-~~~~~i~~~d~~~~~~~~~ 168 (253)
+++++...++.|++||..... ....+... ..+......++++|.++.++++.+ .++. |++||.. +. .+.
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~-I~~~~~~-g~-~~~ 179 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR-IVQFSPS-GK-FVT 179 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE-EEEECTT-SC-EEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe-EEEEcCC-CC-EEE
Confidence 988888889999999986552 22222110 122336889999985566666665 3555 9999943 33 244
Q ss_pred eecc----------cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcC----
Q 035558 169 ELQR----------HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS---- 234 (253)
Q Consensus 169 ~~~~----------~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---- 234 (253)
.+.. +-.....++++|++.+++++...+++|++|+..+++... ......+...+..++++|
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~-----~~~~~~~~~~~~~~~~~pg~~~ 254 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVR-----EIKHASFGRNVFAISYIPGFLF 254 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-----EECCTTTTTCEEEEEEETTEEE
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEE-----EEeccccCCCcceeeecCCEEE
Confidence 4432 223488999999843688888899999999998655322 011234567788999999
Q ss_pred --CCCceEEEEcCCcEEEEE
Q 035558 235 --SQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 235 --~~~~~~~~~~~~~i~vw~ 252 (253)
++..+++...+..+++|+
T Consensus 255 ~~~g~~~v~~~~~~~v~~~~ 274 (329)
T 3fvz_A 255 AVNGKPYFGDQEPVQGFVMN 274 (329)
T ss_dssp EEECCCCTTCSCCCCEEEEE
T ss_pred EeCCCEEeccCCCcEEEEEE
Confidence 332222223344677776
No 179
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.69 E-value=1.3e-14 Score=110.16 Aligned_cols=192 Identities=9% Similarity=-0.007 Sum_probs=134.6
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee------cccccEEEEEec--CCCeEEEEeC-CCcEEEEEc
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI------AHDKEVYDIAWG--GVGVFASVSA-DGSVRVFDL 113 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~------~~~~~v~~~~~~--~~~~l~~~~~-dg~i~i~d~ 113 (253)
..+.+++++ ++++++++...++.|++||.+ ++.+..+. ++...+..+++. ++.++++... ++.|.+||
T Consensus 30 ~~p~~v~~~-~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d- 106 (286)
T 1q7f_A 30 TEPSGVAVN-AQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN- 106 (286)
T ss_dssp SCEEEEEEC-TTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-
T ss_pred CCCceEEEC-CCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-
Confidence 578899999 788888888889999999987 55554443 234578899994 6666666543 88999999
Q ss_pred CCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeec--ccccceeEEEEecCCCCeEE
Q 035558 114 RDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQ--RHQASVNAIAWAPHSSCHIC 191 (253)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~ 191 (253)
.+++....+. ......+..++++| +++++++...++. |.+||... . .+..+. .+...+..++++|++ ++++
T Consensus 107 ~~g~~~~~~~--~~~~~~~~~i~~~~-~g~l~v~~~~~~~-i~~~~~~g-~-~~~~~~~~~~~~~p~~i~~~~~g-~l~v 179 (286)
T 1q7f_A 107 QYGQFVRKFG--ATILQHPRGVTVDN-KGRIIVVECKVMR-VIIFDQNG-N-VLHKFGCSKHLEFPNGVVVNDKQ-EIFI 179 (286)
T ss_dssp TTSCEEEEEC--TTTCSCEEEEEECT-TSCEEEEETTTTE-EEEECTTS-C-EEEEEECTTTCSSEEEEEECSSS-EEEE
T ss_pred CCCcEEEEec--CccCCCceEEEEeC-CCCEEEEECCCCE-EEEEcCCC-C-EEEEeCCCCccCCcEEEEECCCC-CEEE
Confidence 4444322221 12234688999999 7877766655666 99999653 2 234443 344568999999998 5778
Q ss_pred EecCCCcEEEEeccCCCCCCCCCCCCeeec--cCCCceeEEEEcCCCCceEEEEcCC-cEEEEE
Q 035558 192 TAGDDSQALIWDLSSMGQPVEGGLDPILAY--TAGAEIEQLQWSSSQPDWVAIAFST-KLQILR 252 (253)
Q Consensus 192 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~-~i~vw~ 252 (253)
+...++.|++||..... . .... ++...+..+++++++..+++...++ .|.+|+
T Consensus 180 ~~~~~~~i~~~~~~g~~-~-------~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~ 235 (286)
T 1q7f_A 180 SDNRAHCVKVFNYEGQY-L-------RQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT 235 (286)
T ss_dssp EEGGGTEEEEEETTCCE-E-------EEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred EECCCCEEEEEcCCCCE-E-------EEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC
Confidence 87889999999974321 1 1121 2236789999999998666666665 899986
No 180
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.69 E-value=3.6e-14 Score=120.94 Aligned_cols=200 Identities=9% Similarity=0.027 Sum_probs=136.5
Q ss_pred CCeeEEEecCCCCCEEEEEeCCC-----eEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCc---------
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDT-----TCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGS--------- 107 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~--------- 107 (253)
..+..++|+ |++++|+.+..++ .|++||+.+++....... ...+..++|+ +++.|+.++.++.
T Consensus 125 ~~~~~~~~S-PDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 202 (710)
T 2xdw_A 125 VALRGYAFS-EDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET 202 (710)
T ss_dssp EEEEEEEEC-TTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred EEEEEEEEC-CCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-CcccceEEEEeCCCEEEEEEECCcccccccccc
Confidence 468899999 8999988765543 899999999986653322 2236779999 9999999888766
Q ss_pred -------EEEEEcCCCCCe-eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC----CCeEEEEECCC------CCCCeee
Q 035558 108 -------VRVFDLRDKEHS-TIIYESSEPDTPLVRLGWNKQDPRYMATIIMD----SAKVVVLDIRF------PTLPVVE 169 (253)
Q Consensus 108 -------i~i~d~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~----~~~i~~~d~~~------~~~~~~~ 169 (253)
|++|++.++... ..+.....+...+..+.|+| ++++|+..+.. ...|++||+.+ +......
T Consensus 203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 281 (710)
T 2xdw_A 203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (710)
T ss_dssp CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence 999999877532 23334333444678999999 88888877652 23499999986 4323556
Q ss_pred ecccccceeEEEEecCCCCeEEEecCC---CcEEEEeccCCCCCCCCCCCCeeeccCCC--ceeEEEEcCCCCceEEEEc
Q 035558 170 LQRHQASVNAIAWAPHSSCHICTAGDD---SQALIWDLSSMGQPVEGGLDPILAYTAGA--EIEQLQWSSSQPDWVAIAF 244 (253)
Q Consensus 170 ~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~ 244 (253)
+..+...+.. .|+|+|..+++.+..+ +.|.+||+.++.... ...+..|.. .+..++|++++..+++...
T Consensus 282 l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~ 355 (710)
T 2xdw_A 282 LIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESK-----WKVLVPEHEKDVLEWVACVRSNFLVLCYLH 355 (710)
T ss_dssp EECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGG-----CEEEECCCSSCEEEEEEEETTTEEEEEEEE
T ss_pred eeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccc-----ceeccCCCCCCeEEEEEEEcCCEEEEEEEE
Confidence 6666655554 5889885344444433 369999988764211 124444433 6888999977765666777
Q ss_pred CCcEEEE
Q 035558 245 STKLQIL 251 (253)
Q Consensus 245 ~~~i~vw 251 (253)
++..+||
T Consensus 356 ~g~~~l~ 362 (710)
T 2xdw_A 356 DVKNTLQ 362 (710)
T ss_dssp TTEEEEE
T ss_pred CCEEEEE
Confidence 7755544
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.68 E-value=2.7e-14 Score=111.28 Aligned_cols=197 Identities=10% Similarity=0.095 Sum_probs=129.3
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC---C--eEEEEeccCceeeeeeecccccE
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID---T--TCTIWDIEREAVDTQLIAHDKEV 88 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g--~i~vwd~~~~~~~~~~~~~~~~v 88 (253)
.|.+|++.++ +.. .+ ..+..++|+ |+++.|+.++.+ + .|.+|++.+++....... .. +
T Consensus 44 ~l~~~d~~~~----~~~-~l---------~~~~~~~~S-pDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~ 106 (347)
T 2gop_A 44 TIVIENLKNN----ARR-FI---------ENATMPRIS-PDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-I 106 (347)
T ss_dssp EEEEEETTTC----CEE-EE---------ESCEEEEEC-TTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-E
T ss_pred eEEEEeCCCC----ceE-Ec---------ccCCCeEEC-CCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-c
Confidence 7888888875 322 22 146789999 899988877653 3 488888888776554443 34 9
Q ss_pred EEEEec-CCCeEEEEeCC---------------------------CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC
Q 035558 89 YDIAWG-GVGVFASVSAD---------------------------GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ 140 (253)
Q Consensus 89 ~~~~~~-~~~~l~~~~~d---------------------------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 140 (253)
..++|+ +++.|+.++.+ ..|.+||+.+++....+.. . .+..++|+|
T Consensus 107 ~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~----~-~~~~~~~sp- 180 (347)
T 2gop_A 107 RSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK----P-RFSSGIWHR- 180 (347)
T ss_dssp EEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE----E-TTCEEEEET-
T ss_pred cceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC----C-CcccccCCC-
Confidence 999999 99988887642 5699999988764233322 2 678899999
Q ss_pred CCCEEEEEEeCC-----C-eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCC--------CcEEEEeccC
Q 035558 141 DPRYMATIIMDS-----A-KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDD--------SQALIWDLSS 206 (253)
Q Consensus 141 ~~~~l~~~~~~~-----~-~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~ 206 (253)
++ +++++..+. . ...+|.+.+ .. ...+..+ ..+..+ +|+| +.|+.++.+ ..|.+|| +
T Consensus 181 dg-~~~~~~~~~~~~~~~~~~~l~~~d~-~~-~~~l~~~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~d--~ 251 (347)
T 2gop_A 181 DK-IVVNVPHREIIPQYFKFWDIYIWED-GK-EEKMFEK-VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIYD--G 251 (347)
T ss_dssp TE-EEEEEECCCSSCCSSCCEEEEEEET-TE-EEEEEEE-ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEEC--S
T ss_pred Ce-EEEEEecccccccccccccEEEeCC-Cc-eEEeccC-cceeeE--CCCC-CEEEEEEccccCCccccceEEEEC--C
Confidence 77 777665542 1 144444442 32 4444444 445444 9999 567665543 3677777 3
Q ss_pred CCCCCCCCCCCeeeccCCCceeE-EEEcCCCCceEEEEcCCcEEEE
Q 035558 207 MGQPVEGGLDPILAYTAGAEIEQ-LQWSSSQPDWVAIAFSTKLQIL 251 (253)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~i~vw 251 (253)
++ .. .....+...+.. +.|+ ++ .+++++.++.+++|
T Consensus 252 ~~-~~------~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~ 288 (347)
T 2gop_A 252 KE-VM------GILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY 288 (347)
T ss_dssp SC-EE------ESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE
T ss_pred Cc-eE------eccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE
Confidence 22 11 123345677886 9999 87 67788888889888
No 182
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.68 E-value=8.9e-14 Score=109.16 Aligned_cols=204 Identities=13% Similarity=0.114 Sum_probs=127.1
Q ss_pred cEEEEEccCCccccceeeeecCCCCc-cccCCeeEEEecCCCCCEEEEEeC--CCeEEEEeccCceeeee-eecccccEE
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNS-EYCGPLTSFDWNEAEPRRIGTSSI--DTTCTIWDIEREAVDTQ-LIAHDKEVY 89 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~-~~~~~~~v~ 89 (253)
.|.+||..+. +....+...... ........++++ +++++|+++.. ++.|.+||+.+++.+.. +.. ... .
T Consensus 82 ~v~v~d~~t~----~~~~~i~~~~~~~~~g~~p~~i~~s-pdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~~-~ 154 (361)
T 2oiz_A 82 VVEVWDADKL----TFEKEISLPPKRVQGLNYDGLFRQT-TDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AGC-W 154 (361)
T ss_dssp EEEEEETTTC----CEEEEEEECTTBCCBCCCGGGEEEC-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TTE-E
T ss_pred EEEEEECcCC----cEEEEEEcCccccccCCCcceEEEC-CCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CCc-c
Confidence 7999999876 555555432100 001346689999 89999988864 57999999999887766 432 111 1
Q ss_pred EEEec--CCCeEEEEeCCCcEEEEEcCC------------------------------------------------CCCe
Q 035558 90 DIAWG--GVGVFASVSADGSVRVFDLRD------------------------------------------------KEHS 119 (253)
Q Consensus 90 ~~~~~--~~~~l~~~~~dg~i~i~d~~~------------------------------------------------~~~~ 119 (253)
.+.+. ....+++.+.||.+.+|++.. ....
T Consensus 155 ~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~ 234 (361)
T 2oiz_A 155 SVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVK 234 (361)
T ss_dssp EEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCE
T ss_pred eeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCce
Confidence 12222 223444444455544444432 2110
Q ss_pred eee-eccCC--------CCCCeeEEEeeCCCCCEEEEEEe-C---------CCeEEEEECCCCCCCeeeecccccceeEE
Q 035558 120 TII-YESSE--------PDTPLVRLGWNKQDPRYMATIIM-D---------SAKVVVLDIRFPTLPVVELQRHQASVNAI 180 (253)
Q Consensus 120 ~~~-~~~~~--------~~~~i~~~~~~~~~~~~l~~~~~-~---------~~~i~~~d~~~~~~~~~~~~~~~~~i~~~ 180 (253)
... ..... .......++|+| +++.++++.. + ...|.+||+.+.+. +..+..+. +.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~-v~~i~~~~--p~~i 310 (361)
T 2oiz_A 235 VDGPWSLLNDEDKAKNWVPGGYNLVGLHR-ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR-VARIPGRD--ALSM 310 (361)
T ss_dssp EEEEEESCCHHHHHTTCEECCSSCEEEET-TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE-EEEEECTT--CCEE
T ss_pred ecccccccCccccccccccCCeeEEEEec-CCCeEEEEEccCCCcccccCCCceEEEEECCCCcE-EEEEecCC--eeEE
Confidence 000 00000 001112378898 6666666543 1 12499999998663 77777766 8999
Q ss_pred EEecCCCCeEEEecCCCcEEEEeccCC--CCCCCCCCCCeeeccCCCceeEEEEcCCCC
Q 035558 181 AWAPHSSCHICTAGDDSQALIWDLSSM--GQPVEGGLDPILAYTAGAEIEQLQWSSSQP 237 (253)
Q Consensus 181 ~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 237 (253)
+|+|++ ++|++++. +.|.+||..++ +... ....++.....++++|+|+
T Consensus 311 a~spdg-~~l~v~n~-~~v~v~D~~t~~l~~~~-------~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 311 TIDQQR-NLMLTLDG-GNVNVYDISQPEPKLLR-------TIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEETTT-TEEEEECS-SCEEEEECSSSSCEEEE-------EETTSCSSEEEEEECCCSC
T ss_pred EECCCC-CEEEEeCC-CeEEEEECCCCcceeeE-------EeccCCCCcEEEEecCCCC
Confidence 999999 58888886 99999999987 4321 3346778889999999985
No 183
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.67 E-value=3.2e-14 Score=108.56 Aligned_cols=195 Identities=10% Similarity=0.021 Sum_probs=137.4
Q ss_pred CCeeEEEecCCCCC-EEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCee
Q 035558 43 GPLTSFDWNEAEPR-RIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHST 120 (253)
Q Consensus 43 ~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~ 120 (253)
....+++|+ ++++ +++++..++.|..|+..++ ...+..+...+.+++++ +++++++...++.|.+||..+++...
T Consensus 28 ~~~eg~~~d-~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~ 104 (296)
T 3e5z_A 28 TWTEGPVYV-PARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWES 104 (296)
T ss_dssp SSEEEEEEE-GGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEE
T ss_pred ccccCCeEe-CCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEE
Confidence 456789999 7777 7888888999999999876 55666677789999999 88888877778899999997776332
Q ss_pred eeeccC-CCCCCeeEEEeeCCCCCEEEEE----Ee-------------CCCeEEEEECCCCCCCeeeecccccceeEEEE
Q 035558 121 IIYESS-EPDTPLVRLGWNKQDPRYMATI----IM-------------DSAKVVVLDIRFPTLPVVELQRHQASVNAIAW 182 (253)
Q Consensus 121 ~~~~~~-~~~~~i~~~~~~~~~~~~l~~~----~~-------------~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~ 182 (253)
...... .....+..++++| +++++++. +. .+. |..++.. .. ...+..+......++|
T Consensus 105 ~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~-l~~~~~~--g~-~~~~~~~~~~~~gi~~ 179 (296)
T 3e5z_A 105 IADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRW-VFRLAPD--GT-LSAPIRDRVKPNGLAF 179 (296)
T ss_dssp EECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCE-EEEECTT--SC-EEEEECCCSSEEEEEE
T ss_pred EeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcE-EEEECCC--CC-EEEeecCCCCCccEEE
Confidence 221111 1122567899999 88888763 21 223 6666654 22 4455556667899999
Q ss_pred ecCCCCeEEEecCCCcEEEEeccCCCCC-CCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 183 APHSSCHICTAGDDSQALIWDLSSMGQP-VEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 183 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
+|++ +.|++.+.++.|.+|++...... . . ......+...+.+++++++|..+++. ++.|.+|+
T Consensus 180 s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~---~-~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~ 243 (296)
T 3e5z_A 180 LPSG-NLLVSDTGDNATHRYCLNARGETEY---Q-GVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLT 243 (296)
T ss_dssp CTTS-CEEEEETTTTEEEEEEECSSSCEEE---E-EEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEEC
T ss_pred CCCC-CEEEEeCCCCeEEEEEECCCCcCcC---C-CeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEEC
Confidence 9999 56788888999999999732211 0 0 01112345567789999999855554 78888886
No 184
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.67 E-value=8.3e-14 Score=105.18 Aligned_cols=212 Identities=11% Similarity=0.002 Sum_probs=149.9
Q ss_pred CceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558 5 PDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI 82 (253)
Q Consensus 5 ~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 82 (253)
+++|++++ + .|++||..++ +.+..+..+.. ..+.++.+. +++++++ +.++.|+.||. +++.+..+.
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG----~~~w~~~~~~~----~~~~~~~~~-pdG~ilv--s~~~~V~~~d~-~G~~~W~~~ 72 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTK----EIVWEYPLEKG----WECNSVAAT-KAGEILF--SYSKGAKMITR-DGRELWNIA 72 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTT----EEEEEEECCTT----CCCCEEEEC-TTSCEEE--ECBSEEEEECT-TSCEEEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCC----eEEEEeCCCcc----CCCcCeEEC-CCCCEEE--eCCCCEEEECC-CCCEEEEEc
Confidence 46777776 4 9999999787 77777776541 257788999 8899888 34678999999 788888887
Q ss_pred cc-cccEEEEEec-CCCeEEEEeC-CCcEEEEEcCCCCCeeeeeccC---CCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558 83 AH-DKEVYDIAWG-GVGVFASVSA-DGSVRVFDLRDKEHSTIIYESS---EPDTPLVRLGWNKQDPRYMATIIMDSAKVV 156 (253)
Q Consensus 83 ~~-~~~v~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~ 156 (253)
.+ ...+.++.+. +++++++.+. ++.|..+|. +++......... .+......+++.+ +++++++...++. |.
T Consensus 73 ~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~-v~ 149 (276)
T 3no2_A 73 APAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSE-VR 149 (276)
T ss_dssp CCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTE-EE
T ss_pred CCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCE-EE
Confidence 64 3578888888 9999999887 777877776 344222221111 1112344566777 8999988877777 99
Q ss_pred EEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeecc------CCCceeEE
Q 035558 157 VLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYT------AGAEIEQL 230 (253)
Q Consensus 157 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~v~~~ 230 (253)
.||.. ++. +.++... ..+.++...+++ +++++++.+++|..+|..+++..- .... ....+..+
T Consensus 150 ~~d~~-G~~-~w~~~~~-~~~~~~~~~~~g-~~~v~~~~~~~v~~~d~~tG~~~w-------~~~~~~~~~~~l~~~~~~ 218 (276)
T 3no2_A 150 EIAPN-GQL-LNSVKLS-GTPFSSAFLDNG-DCLVACGDAHCFVQLNLESNRIVR-------RVNANDIEGVQLFFVAQL 218 (276)
T ss_dssp EECTT-SCE-EEEEECS-SCCCEEEECTTS-CEEEECBTTSEEEEECTTTCCEEE-------EEEGGGSBSCCCSEEEEE
T ss_pred EECCC-CCE-EEEEECC-CCccceeEcCCC-CEEEEeCCCCeEEEEeCcCCcEEE-------EecCCCCCCccccccccc
Confidence 99987 553 6666543 456678888998 588888888899999998776432 1111 12347788
Q ss_pred EEcCCCCceEEE
Q 035558 231 QWSSSQPDWVAI 242 (253)
Q Consensus 231 ~~~~~~~~~~~~ 242 (253)
+..+++..+++.
T Consensus 219 ~~~~~G~i~v~~ 230 (276)
T 3no2_A 219 FPLQNGGLYICN 230 (276)
T ss_dssp EECTTSCEEEEE
T ss_pred eEcCCCCEEEEe
Confidence 888888755444
No 185
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.67 E-value=3.3e-14 Score=110.77 Aligned_cols=210 Identities=14% Similarity=0.111 Sum_probs=136.8
Q ss_pred CCCceEEeec-----C--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC-----------
Q 035558 3 QKPDLLATSS-----D--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID----------- 64 (253)
Q Consensus 3 ~~~~~l~~~~-----~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------- 64 (253)
++|+.|+..+ + .|.+|++..+ +..... .+. . +..++|+ |+++.|+.++.+
T Consensus 68 pDg~~la~~~~~~~~~~~~l~~~~~~~g----~~~~l~-~~~-----~-~~~~~ws-pdg~~l~~~~~~~~~~~~~~~~~ 135 (347)
T 2gop_A 68 PDGKKIAFMRANEEKKVSEIWVADLETL----SSKKIL-EAK-----N-IRSLEWN-EDSRKLLIVGFKRREDEDFIFED 135 (347)
T ss_dssp TTSSEEEEEEEETTTTEEEEEEEETTTT----EEEEEE-EES-----E-EEEEEEC-TTSSEEEEEEECCCC--------
T ss_pred CCCCEEEEEEeccCCCcceEEEEECCCC----ceEEEE-cCC-----C-ccceeEC-CCCCEEEEEEccCCCcCCcEEEc
Confidence 3455555543 2 4888888775 333332 233 4 8899999 889888877632
Q ss_pred ----------------CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCC-------cEEEEEcCCCCCee
Q 035558 65 ----------------TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADG-------SVRVFDLRDKEHST 120 (253)
Q Consensus 65 ----------------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg-------~i~i~d~~~~~~~~ 120 (253)
..|++||+.+++.+..+.. . .+..+.|+ ++ +++++..++ ...+|.+.+++ ..
T Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~ 211 (347)
T 2gop_A 136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EE 211 (347)
T ss_dssp -CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EE
T ss_pred ccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eE
Confidence 5799999988876455554 3 78899999 88 777776542 44555554332 23
Q ss_pred eeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC-------CeEEEEECCCCCCCeeeecccccceeE-EEEecCCCCeEEE
Q 035558 121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDS-------AKVVVLDIRFPTLPVVELQRHQASVNA-IAWAPHSSCHICT 192 (253)
Q Consensus 121 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-------~~i~~~d~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~l~~ 192 (253)
.+... ..+..+ +| +++.|+.++.+. ..|.+|| + .........+...+.. +.|+ ++ ++++
T Consensus 212 ~l~~~----~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~~~~~~~~~~s-dg--~~~~ 278 (347)
T 2gop_A 212 KMFEK----VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDEVDRGVGQAKIKD-GK--VYFT 278 (347)
T ss_dssp EEEEE----ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTTCCSEEEEEEEET-TE--EEEE
T ss_pred EeccC----cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC--C-CceEeccccCCcccCCccEEc-Cc--EEEE
Confidence 33221 244444 88 888888776543 2488888 3 2223334455677886 8998 75 8888
Q ss_pred ecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcE-EEEE
Q 035558 193 AGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKL-QILR 252 (253)
Q Consensus 193 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i-~vw~ 252 (253)
++.++.+++| +.+++ . .....+...|.+++|+| ..+++.+.++.. .+|.
T Consensus 279 ~~~~~~~~l~-~~~g~-~-------~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~ 328 (347)
T 2gop_A 279 LFEEGSVNLY-IWDGE-I-------KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFT 328 (347)
T ss_dssp EEETTEEEEE-EESSS-E-------EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEE
T ss_pred EecCCcEEEE-EcCCc-e-------EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheE
Confidence 9999999999 87322 1 24445577899999999 456666666654 6764
No 186
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.66 E-value=7.7e-13 Score=100.63 Aligned_cols=223 Identities=9% Similarity=-0.005 Sum_probs=148.1
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeee-ecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee-ee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSL-LNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV-DT 79 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~ 79 (253)
++.++++.. + .|.+|+.. + +.... ...+. ..+.++++. +++.++++...++.|..||.. ++. ..
T Consensus 25 ~g~l~v~~~~~~~v~~~d~~-~----~~~~~~~~~~~-----~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-g~~~~~ 92 (299)
T 2z2n_A 25 KGKVWITQHKANMISCINLD-G----KITEYPLPTPD-----AKVMCLTIS-SDGEVWFTENAANKIGRITKK-GIIKEY 92 (299)
T ss_dssp TSCEEEEETTTTEEEEECTT-C----CEEEEECSSTT-----CCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred CCCEEEEecCCCcEEEEcCC-C----CeEEecCCccc-----CceeeEEEC-CCCCEEEeCCCCCeEEEECCC-CcEEEE
Confidence 455666654 4 89999987 4 32221 12233 568899999 788887777668899999986 332 11
Q ss_pred eeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558 80 QLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL 158 (253)
Q Consensus 80 ~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~ 158 (253)
.+......+.++++. ++.++++...++.|..||. +++.. .. ........+..+++++ +++++++...++. |..|
T Consensus 93 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~-~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~-i~~~ 167 (299)
T 2z2n_A 93 TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-EY-ELPNKGSYPSFITLGS-DNALWFTENQNNA-IGRI 167 (299)
T ss_dssp ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EE-ECSSTTCCEEEEEECT-TSCEEEEETTTTE-EEEE
T ss_pred eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-Ee-cCCCCCCCCceEEEcC-CCCEEEEeCCCCE-EEEE
Confidence 222244578899999 8888888777889999998 44322 12 1222334788999998 7776665544556 9999
Q ss_pred ECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCc
Q 035558 159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPD 238 (253)
Q Consensus 159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 238 (253)
|. +..............+.++++++++ +++++...++.|.+||. ++.... .....+...+.++++++++..
T Consensus 168 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~~------~~~~~~~~~~~~i~~~~~g~l 238 (299)
T 2z2n_A 168 TE-SGDITEFKIPTPASGPVGITKGNDD-ALWFVEIIGNKIGRITT-SGEITE------FKIPTPNARPHAITAGAGIDL 238 (299)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEEE------EECSSTTCCEEEEEECSTTCE
T ss_pred cC-CCcEEEeeCCCCCCcceeEEECCCC-CEEEEccCCceEEEECC-CCcEEE------EECCCCCCCceeEEECCCCCE
Confidence 98 4332111123344568899999998 57777767889999998 544211 112234567899999999985
Q ss_pred eEEEEcCCcEEEEE
Q 035558 239 WVAIAFSTKLQILR 252 (253)
Q Consensus 239 ~~~~~~~~~i~vw~ 252 (253)
+++...++.|..|+
T Consensus 239 ~v~~~~~~~i~~~d 252 (299)
T 2z2n_A 239 WFTEWGANKIGRLT 252 (299)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEeccCCceEEEEC
Confidence 55554677888876
No 187
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.65 E-value=1.1e-14 Score=115.20 Aligned_cols=222 Identities=8% Similarity=-0.022 Sum_probs=137.9
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeE-------------------EEecCCCCCEEEEE-
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTS-------------------FDWNEAEPRRIGTS- 61 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~~~- 61 (253)
+++.|+.++ + .|++|++..+ +.......+. ..... +.|+ |+++.++.+
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~~----~~~~~~~~~~-----~~~~~g~~l~~~~~~~~~~~~~~~~~~s-pdg~~~~~~~ 160 (396)
T 3c5m_A 91 DERAFFYVKNELNLMKVDLETL----EEQVIYTVDE-----EWKGYGTWVANSDCTKLVGIEILKRDWQ-PLTSWEKFAE 160 (396)
T ss_dssp TSSEEEEEETTTEEEEEETTTC----CEEEEEECCT-----TEEEEEEEEECTTSSEEEEEEEEGGGCC-CCCSHHHHHH
T ss_pred CCCEEEEEEcCCcEEEEECCCC----CcEEEEeccc-----ccCCCCCEEEeccCCccccccccccccC-CCCcceeeee
Confidence 555665555 4 8999999875 4444444333 11111 3456 566665543
Q ss_pred ----eCCCeEEEEeccCceeeeeeecccccEEEEEec--CCCeEEEEeCC------CcEEEEEcCCCCCeeeeeccCCCC
Q 035558 62 ----SIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG--GVGVFASVSAD------GSVRVFDLRDKEHSTIIYESSEPD 129 (253)
Q Consensus 62 ----~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~ 129 (253)
..+..|++||+.+++..... .+...+..+.|+ +++.|+..+.+ ..|.+||+.+.+... +.. ....
T Consensus 161 ~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~-~~~~ 237 (396)
T 3c5m_A 161 FYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKE-HAEG 237 (396)
T ss_dssp HHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSC-CCTT
T ss_pred eccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eec-cCCC
Confidence 35668999999887755443 466778899998 46667666543 368888887654222 211 1112
Q ss_pred CCeeEEEeeCCCCCEEEEEEeCC----CeEEEEECCCCCCCeeeecccccceeEEEEec-CCCCeEEEec----------
Q 035558 130 TPLVRLGWNKQDPRYMATIIMDS----AKVVVLDIRFPTLPVVELQRHQASVNAIAWAP-HSSCHICTAG---------- 194 (253)
Q Consensus 130 ~~i~~~~~~~~~~~~l~~~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~---------- 194 (253)
..+..++|+| +++.|+.++.++ ..|++||+.++. ...+..... .. +.|+| ++ +++++++
T Consensus 238 ~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~-~~-~~~s~~dg-~~l~~~~~~~p~~~~~~ 311 (396)
T 3c5m_A 238 ESCTHEFWIP-DGSAMAYVSYFKGQTDRVIYKANPETLE--NEEVMVMPP-CS-HLMSNFDG-SLMVGDGCDAPVDVADA 311 (396)
T ss_dssp EEEEEEEECT-TSSCEEEEEEETTTCCEEEEEECTTTCC--EEEEEECCS-EE-EEEECSSS-SEEEEEECCC-------
T ss_pred ccccceEECC-CCCEEEEEecCCCCccceEEEEECCCCC--eEEeeeCCC-CC-CCccCCCC-ceEEEecCCcceeeccc
Confidence 2578899999 888777766541 239999998754 222221111 23 89999 98 5777654
Q ss_pred ------CCCcEEEEeccCCCCCCCCCCCCeeeccCCC-----------ceeEEEEcCCCCceEEEEc-CCcEEEEE
Q 035558 195 ------DDSQALIWDLSSMGQPVEGGLDPILAYTAGA-----------EIEQLQWSSSQPDWVAIAF-STKLQILR 252 (253)
Q Consensus 195 ------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~~~~~~~-~~~i~vw~ 252 (253)
.++.|++||+.++... .+..+.. .+..++|+|+++.++..+. ++...+|.
T Consensus 312 ~~~~~~~~~~i~~~d~~~~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~ 379 (396)
T 3c5m_A 312 DSYNIENDPFLYVLNTKAKSAQ--------KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYI 379 (396)
T ss_dssp ---CCCCCCEEEEEETTTTBCC--------EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred cccccCCCCcEEEEecccCceE--------EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEE
Confidence 3478999999876521 2233332 2567899999987775554 55566664
No 188
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.65 E-value=2.4e-13 Score=115.86 Aligned_cols=227 Identities=6% Similarity=-0.032 Sum_probs=146.3
Q ss_pred CCCceEEeec-----C--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCe---------
Q 035558 3 QKPDLLATSS-----D--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTT--------- 66 (253)
Q Consensus 3 ~~~~~l~~~~-----~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--------- 66 (253)
+++++||.+. + .|++||+.++ +.......+ ..+..++|+ ++++.|+.++.++.
T Consensus 134 PDg~~la~~~~~~G~~~~~i~v~d~~tg----~~~~~~~~~------~~~~~~~ws-pDg~~l~~~~~~~~~~~~~~~~~ 202 (710)
T 2xdw_A 134 EDGEYFAYGLSASGSDWVTIKFMKVDGA----KELPDVLER------VKFSCMAWT-HDGKGMFYNAYPQQDGKSDGTET 202 (710)
T ss_dssp TTSSEEEEEEEETTCSCEEEEEEETTTT----EEEEEEEEE------ECSCCEEEC-TTSSEEEEEECCCCSSCCSSSCC
T ss_pred CCCCEEEEEEcCCCCceEEEEEEECCCC----CCCcccccC------cccceEEEE-eCCCEEEEEEECCcccccccccc
Confidence 4566666432 2 7999999886 433322222 236689999 89999998887765
Q ss_pred -------EEEEeccCceee--e--eeecccccEEEEEec-CCCeEEEEeC-----CCcEEEEEcCC------CC-Ceeee
Q 035558 67 -------CTIWDIEREAVD--T--QLIAHDKEVYDIAWG-GVGVFASVSA-----DGSVRVFDLRD------KE-HSTII 122 (253)
Q Consensus 67 -------i~vwd~~~~~~~--~--~~~~~~~~v~~~~~~-~~~~l~~~~~-----dg~i~i~d~~~------~~-~~~~~ 122 (253)
|++|++.+++.. . ....|...+..+.|+ ++++|+..+. +..|++||+.+ +. ....+
T Consensus 203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l 282 (710)
T 2xdw_A 203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL 282 (710)
T ss_dssp CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEe
Confidence 999999876522 2 222345567899999 9998887765 56899999986 42 23333
Q ss_pred eccCCCCCCeeEEEeeCCCCCEEEEEEeCC---CeEEEEECCCCCC-Ceeeeccccc--ceeEEEEecCCCCeEEEecCC
Q 035558 123 YESSEPDTPLVRLGWNKQDPRYMATIIMDS---AKVVVLDIRFPTL-PVVELQRHQA--SVNAIAWAPHSSCHICTAGDD 196 (253)
Q Consensus 123 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~---~~i~~~d~~~~~~-~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~d 196 (253)
.. +...+.. .|+| ++..|+..+..+ ..|.+||+.+... ....+..|.. .+..++|++++ .++++...|
T Consensus 283 ~~---~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~lv~~~~~~ 356 (710)
T 2xdw_A 283 ID---NFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN-FLVLCYLHD 356 (710)
T ss_dssp EC---SSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT-EEEEEEEET
T ss_pred eC---CCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC-EEEEEEEEC
Confidence 22 2223333 4778 777776665532 2499999987541 1344544543 68889999766 688888888
Q ss_pred CcE--EEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE-Ec---CCcEEEEEC
Q 035558 197 SQA--LIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI-AF---STKLQILRV 253 (253)
Q Consensus 197 g~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~---~~~i~vw~l 253 (253)
+.. .+|++.+++.. ..+..+...+..++++|+++.++.. ++ .+.+..|++
T Consensus 357 g~~~l~~~~~~~g~~~-------~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 357 VKNTLQLHDLATGALL-------KIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp TEEEEEEEETTTCCEE-------EEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred CEEEEEEEECCCCCEE-------EecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 854 55565454422 1334457788999999988765533 22 246766663
No 189
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.62 E-value=1.9e-14 Score=112.72 Aligned_cols=179 Identities=9% Similarity=-0.014 Sum_probs=128.9
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---------eee-eeecccccEEEEEecCCCeEEEEeCCCcEEEEE
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---------VDT-QLIAHDKEVYDIAWGGVGVFASVSADGSVRVFD 112 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------~~~-~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d 112 (253)
.++..++++ +...++++|+.+ .+++|+++..+ ... ....+.. |+.|+| +++.|+++ .++.|++||
T Consensus 38 ~~~nlLais-~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f-d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 38 ASLQNLDIS-NSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF-HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp SCCBCEEEE-TTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE-ETTEEEEE-ESSEEEEEE
T ss_pred ccccEEEEc-CCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE-CCCEEEEE-cCCcEEEEE
Confidence 468899999 888899999887 46679876543 111 1224566 999999 89999998 889999999
Q ss_pred cCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEE
Q 035558 113 LRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICT 192 (253)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 192 (253)
+++........ .++..+.++.+.+. .++++..+|. +.+||+.+... . . +...|++++|+|+| ++.
T Consensus 113 v~sl~~~~~~~---~~~~~v~~i~~~~p---~~av~~~dG~-L~v~dl~~~~~-~-~---~~~~Vs~v~WSpkG---~~v 177 (388)
T 1xip_A 113 LEELSEFRTVT---SFEKPVFQLKNVNN---TLVILNSVND-LSALDLRTKST-K-Q---LAQNVTSFDVTNSQ---LAV 177 (388)
T ss_dssp SSSTTCEEEEE---ECSSCEEEEEECSS---EEEEEETTSE-EEEEETTTCCE-E-E---EEESEEEEEECSSE---EEE
T ss_pred chhhhccCccc---eeecceeeEEecCC---CEEEEECCCC-EEEEEccCCcc-c-c---ccCCceEEEEcCCc---eEE
Confidence 98876444333 22346788877652 2888888888 99999987552 2 2 45689999999998 567
Q ss_pred ecCCCcEEEEeccCCCCC-CCCCCCCeeec---cCCCceeEEEEcCCCCceEE
Q 035558 193 AGDDSQALIWDLSSMGQP-VEGGLDPILAY---TAGAEIEQLQWSSSQPDWVA 241 (253)
Q Consensus 193 ~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~ 241 (253)
|..||++++|+....... ......|.... +|...|.+|.|.+++.++++
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 888999999988765520 10001111112 47899999999999876665
No 190
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.62 E-value=1.2e-12 Score=100.41 Aligned_cols=224 Identities=6% Similarity=0.029 Sum_probs=141.6
Q ss_pred CCCceEEe-------e-cC-cEEEEEccCCccccceeeeec----CCCCccccCCeeEEEecCCC-CCEEEEEeCCCeEE
Q 035558 3 QKPDLLAT-------S-SD-FLRVWRISDEDRRVELKSLLN----GNKNSEYCGPLTSFDWNEAE-PRRIGTSSIDTTCT 68 (253)
Q Consensus 3 ~~~~~l~~-------~-~~-~v~iw~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~ 68 (253)
+++.++++ + .+ .|.+|+..++ +...... ++. ..+.+++++ ++ ++++++. ..+.|.
T Consensus 27 ~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g----~~~~~~~~~~~~~~-----~~~~~i~~~-~~~g~l~v~~-~~~~l~ 95 (314)
T 1pjx_A 27 KNGDFYIVAPEVEVNGKPAGEILRIDLKTG----KKTVICKPEVNGYG-----GIPAGCQCD-RDANQLFVAD-MRLGLL 95 (314)
T ss_dssp TTSCEEEEETTCEETTEECCEEEEECTTTC----CEEEEECCEETTEE-----CCEEEEEEC-SSSSEEEEEE-TTTEEE
T ss_pred CCCCEEEEEeccccCCCCCCEEEEEeCCCC----cEEEEEecccCCCC-----CCCceEEEe-cCCCcEEEEE-CCCCEE
Confidence 35566666 3 34 8999998764 3222111 133 568899998 66 6655544 445799
Q ss_pred EEeccCceeeee-eec----ccccEEEEEec-CCCeEEEEeCC---------------CcEEEEEcCCCCCeeeeeccCC
Q 035558 69 IWDIEREAVDTQ-LIA----HDKEVYDIAWG-GVGVFASVSAD---------------GSVRVFDLRDKEHSTIIYESSE 127 (253)
Q Consensus 69 vwd~~~~~~~~~-~~~----~~~~v~~~~~~-~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~~~~~~ 127 (253)
+||.+ ++.... ... ....+.++++. +++++++...+ +.|..+|.. ++. .....
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~--- 169 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM-IQVDT--- 169 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE-EEEEE---
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE-EEecc---
Confidence 99988 664332 211 12357899999 88887777655 467777655 332 22211
Q ss_pred CCCCeeEEEee----CCCCCEEEEEEe-CCCeEEEEECC-CCCC----Ceeeecccc-cceeEEEEecCCCCeEEEecCC
Q 035558 128 PDTPLVRLGWN----KQDPRYMATIIM-DSAKVVVLDIR-FPTL----PVVELQRHQ-ASVNAIAWAPHSSCHICTAGDD 196 (253)
Q Consensus 128 ~~~~i~~~~~~----~~~~~~l~~~~~-~~~~i~~~d~~-~~~~----~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~d 196 (253)
.......++|+ | +++.++++.. ++. |.+||.. .... ....+..+. ..+..++++++| +++++...+
T Consensus 170 ~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~-i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~~~~ 246 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDG-RPYQLIVAETPTKK-LWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN-NLLVANWGS 246 (314)
T ss_dssp EESSEEEEEEEECTTS-CEEEEEEEETTTTE-EEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC-CEEEEEETT
T ss_pred CCCCcceEEEecccCC-CCCEEEEEECCCCe-EEEEECCCCCccccceEEEECCCCCCCCCCceEECCCC-CEEEEEcCC
Confidence 11246788999 8 7766666554 455 9999976 2221 122233333 567889999998 577777778
Q ss_pred CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE-EEEcCCcEEEEEC
Q 035558 197 SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV-AIAFSTKLQILRV 253 (253)
Q Consensus 197 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~vw~l 253 (253)
+.|.+||..+++... ....+...+.+++++|+++.++ +...++.|..|++
T Consensus 247 ~~i~~~d~~~g~~~~-------~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 247 SHIEVFGPDGGQPKM-------RIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp TEEEEECTTCBSCSE-------EEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred CEEEEEcCCCCcEeE-------EEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence 899999987544322 3334557899999999998444 4445678887764
No 191
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.61 E-value=1.1e-12 Score=108.39 Aligned_cols=229 Identities=10% Similarity=0.013 Sum_probs=150.3
Q ss_pred ceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEecc--Cceeeeee
Q 035558 6 DLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE--REAVDTQL 81 (253)
Q Consensus 6 ~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~ 81 (253)
.++++..+ .|.++|..++ +.+..+.... .+..+.|+ ++++++++++.|+.|.+||+. +++.+..+
T Consensus 168 ~~~V~~~~~~~V~viD~~t~----~v~~~i~~g~------~p~~v~~S-pDGr~lyv~~~dg~V~viD~~~~t~~~v~~i 236 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTY----EIKTVLDTGY------AVHISRLS-ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI 236 (567)
T ss_dssp EEEEEETTTTEEEEEETTTC----CEEEEEECSS------CEEEEEEC-TTSCEEEEEETTSEEEEEETTSSSCCEEEEE
T ss_pred eEEEEeCCCCeEEEEECCCC----eEEEEEeCCC------CccceEEC-CCCCEEEEEcCCCeEEEEECCCCCCcEeEEE
Confidence 34455543 9999999987 7777776543 46689999 899999999999999999995 77777777
Q ss_pred ecccccEEEEEec-----CCCeEEEEeC-CCcEEEEEcCCCCCeeeeeccC--------CCCCCeeEEEeeCCCCCEEEE
Q 035558 82 IAHDKEVYDIAWG-----GVGVFASVSA-DGSVRVFDLRDKEHSTIIYESS--------EPDTPLVRLGWNKQDPRYMAT 147 (253)
Q Consensus 82 ~~~~~~v~~~~~~-----~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~l~~ 147 (253)
.... ....++|+ ++++++++.. +++|.++|..+.+....+.... ..+..+..+..++ ++..+++
T Consensus 237 ~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~-~~~~~vv 314 (567)
T 1qks_A 237 KIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH-YRPEFIV 314 (567)
T ss_dssp ECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS-SSSEEEE
T ss_pred ecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcC-CCCEEEE
Confidence 6433 45788888 6777776655 5999999999887665544221 0122677888888 4444444
Q ss_pred EEeCCCeEEEEECCCCCCC-eeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCe-eeccCCC
Q 035558 148 IIMDSAKVVVLDIRFPTLP-VVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPI-LAYTAGA 225 (253)
Q Consensus 148 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~ 225 (253)
.-.+.+.|.++|....... +..+ ........+.|+|++..++++...++.|.++|+.+++... ..+. ....|.+
T Consensus 315 ~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~---~i~vgg~~Phpg 390 (567)
T 1qks_A 315 NVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVA---IEDTGGQTPHPG 390 (567)
T ss_dssp EETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE---EEECSSSSBCCT
T ss_pred EecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEE---EEeccCcCCCCc
Confidence 4455445999998765421 2222 2334567889999994334555578999999999876322 0000 1112332
Q ss_pred ceeEEEEcCCCCceEEEE--cCCcEEEEE
Q 035558 226 EIEQLQWSSSQPDWVAIA--FSTKLQILR 252 (253)
Q Consensus 226 ~v~~~~~~~~~~~~~~~~--~~~~i~vw~ 252 (253)
.-..+ ++|++..+.+.+ .++.|.+++
T Consensus 391 ~g~~~-~~p~~g~v~~t~~~g~~~Vsvid 418 (567)
T 1qks_A 391 RGANF-VHPTFGPVWATSHMGDDSVALIG 418 (567)
T ss_dssp TCEEE-EETTTEEEEEEEBSSSSEEEEEE
T ss_pred cceee-ECCCCCcEEEeCCCCCCeEEEec
Confidence 22222 578744444433 357888876
No 192
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.61 E-value=1.9e-13 Score=116.30 Aligned_cols=226 Identities=11% Similarity=0.020 Sum_probs=141.3
Q ss_pred CCCceEE-----eecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCe---------
Q 035558 3 QKPDLLA-----TSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTT--------- 66 (253)
Q Consensus 3 ~~~~~l~-----~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--------- 66 (253)
++|++|| .|++ .|++||+.++ +... ..+... .....++|+ ++++.|+.++.|..
T Consensus 130 PDG~~la~~~~~~G~~~~~i~v~dl~tg----~~~~--~~~~~~---~~~~~~~ws-pDg~~l~~~~~d~~~~~~~~~~~ 199 (695)
T 2bkl_A 130 WDGKKVAFAQKPNAADEAVLHVIDVDSG----EWSK--VDVIEG---GKYATPKWT-PDSKGFYYEWLPTDPSIKVDERP 199 (695)
T ss_dssp TTSSEEEEEEEETTCSCCEEEEEETTTC----CBCS--SCCBSC---CTTCCCEEC-TTSSEEEEEECCCCTTSCGGGGG
T ss_pred CCCCEEEEEECCCCCceEEEEEEECCCC----CCcC--CcccCc---ccccceEEe-cCCCEEEEEEecCCCCCccccCC
Confidence 4667777 4553 8999999986 3321 111100 112689999 89999999888776
Q ss_pred ----EEEEeccCce----eeeeeecccccEEEEEec-CCCeEEEEeCCC----cEEEEEcCCCCCeeeeeccCCCCCCee
Q 035558 67 ----CTIWDIEREA----VDTQLIAHDKEVYDIAWG-GVGVFASVSADG----SVRVFDLRDKEHSTIIYESSEPDTPLV 133 (253)
Q Consensus 67 ----i~vwd~~~~~----~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~i~ 133 (253)
|++|++.++. .+.....+...+..+.|+ ++++|+.++.++ .|.++|..+++. ..+... ...+.
T Consensus 200 ~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~---~~~~~ 275 (695)
T 2bkl_A 200 GYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKG---VGAKY 275 (695)
T ss_dssp GGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEEC---SSCCE
T ss_pred CCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecC---CCceE
Confidence 9999998775 333333455678899999 999888877666 677776554432 223222 22445
Q ss_pred EEEeeCCCCCEEEEEEeC--CCeEEEEECCCCCC-Ceeeeccc--ccceeEEEEecCCCCeEEEecCCCcEEEEeccC-C
Q 035558 134 RLGWNKQDPRYMATIIMD--SAKVVVLDIRFPTL-PVVELQRH--QASVNAIAWAPHSSCHICTAGDDSQALIWDLSS-M 207 (253)
Q Consensus 134 ~~~~~~~~~~~l~~~~~~--~~~i~~~d~~~~~~-~~~~~~~~--~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~ 207 (253)
...+ + ++.+++.+..+ ...|.+||+.+... ....+..+ ...+..++|+ ++ .++++...|+..++|.+.. +
T Consensus 276 ~~~~-~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g 351 (695)
T 2bkl_A 276 EVHA-W-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKG 351 (695)
T ss_dssp EEEE-E-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTC
T ss_pred EEEe-c-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCC
Confidence 5556 4 45544443322 23499999976541 12333333 4467888888 44 6888999999999987763 2
Q ss_pred CCCCCCCCCCeeec-cCCCceeEEEEcCCCCceEEEEc----CCcEEEEEC
Q 035558 208 GQPVEGGLDPILAY-TAGAEIEQLQWSSSQPDWVAIAF----STKLQILRV 253 (253)
Q Consensus 208 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~----~~~i~vw~l 253 (253)
... ..+. .....+..++++|+++.++.... .+.+.+|++
T Consensus 352 ~~~-------~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~ 395 (695)
T 2bkl_A 352 KPV-------RTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV 395 (695)
T ss_dssp CEE-------EECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEET
T ss_pred Cee-------EEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 211 1222 23667888999998876663222 246777764
No 193
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.61 E-value=2.7e-12 Score=102.33 Aligned_cols=225 Identities=11% Similarity=0.030 Sum_probs=146.7
Q ss_pred CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCC--eEEEEeccCceee
Q 035558 3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT--TCTIWDIEREAVD 78 (253)
Q Consensus 3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~ 78 (253)
++++++++... .|++||...+ ......... .... ++|+ ++++.|+++..++ .|.+++...+...
T Consensus 140 ~~g~lyv~d~~~~~I~~id~~~g----~~~~~~~~~------~~~~-ia~~-~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 140 GNNTVLAYQRDDPRVRLISVDDN----KVTTVHPGF------KGGK-PAVT-KDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp STTEEEEEETTTTEEEEEETTTT----EEEEEEETC------CBCB-CEEC-TTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCCCEEEEecCCCcEEEEECCCC----EEEEeeccC------CCCc-eeEe-cCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 35567776653 9999999875 433333332 2233 8899 7888888888766 7888988765543
Q ss_pred eee----ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeec--cCCCCCCe--eEEEeeCCCCCEEEEEE
Q 035558 79 TQL----IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYE--SSEPDTPL--VRLGWNKQDPRYMATII 149 (253)
Q Consensus 79 ~~~----~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~i--~~~~~~~~~~~~l~~~~ 149 (253)
..+ ......+.+++++ ++..|+.+..++.|+.||..+.... .+.. .......- ..++|+| ++..|+++.
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-~~~~~~~~g~~~~~P~~~ia~~p-~~g~lyv~d 285 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-LIKQLELSGSLGTNPGPYLIYYF-VDSNFYMSD 285 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-EEEECCCCSCCCCSSCCEEEEET-TTTEEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-EEecccccCCCCCCccccEEEeC-CCCEEEEEe
Confidence 333 1134567888998 5666666777899999999877522 2210 11111122 3899999 544555555
Q ss_pred eCCCeEEEEECCCCCCCeeeecccc---------------cceeEEEEecCCCCeEEEec-CCCcEEEEeccCCCCCCCC
Q 035558 150 MDSAKVVVLDIRFPTLPVVELQRHQ---------------ASVNAIAWAPHSSCHICTAG-DDSQALIWDLSSMGQPVEG 213 (253)
Q Consensus 150 ~~~~~i~~~d~~~~~~~~~~~~~~~---------------~~i~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 213 (253)
.....|+.|+.... +..+.++. .....++++|++ +++++-. .+++|+.|++..+...
T Consensus 286 ~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~v~--- 358 (409)
T 3hrp_A 286 QNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGYVS--- 358 (409)
T ss_dssp TTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTTEEE---
T ss_pred CCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCEEE---
Confidence 44444999987642 33332221 347899999999 5778877 8999999997665421
Q ss_pred CCCCeeeccC---------------CCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 214 GLDPILAYTA---------------GAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 214 ~~~~~~~~~~---------------~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
...++ -.....+++++++..+++-..++.|+.+.+
T Consensus 359 -----~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 359 -----TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -----EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -----EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 11111 346889999999876677777888887653
No 194
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.60 E-value=3.2e-13 Score=114.85 Aligned_cols=197 Identities=9% Similarity=0.050 Sum_probs=134.1
Q ss_pred CCeeEEEecCCCCCEEE-----EEeCCCeEEEEeccCceee-eeeecccccEEEEEec-CCCeEEEEeCCCc--------
Q 035558 43 GPLTSFDWNEAEPRRIG-----TSSIDTTCTIWDIEREAVD-TQLIAHDKEVYDIAWG-GVGVFASVSADGS-------- 107 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~-----~~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~-------- 107 (253)
..+.+++|| |++++|+ .|+.+..|++||+.+++.+ ..... ......++|+ +++.|+.++.|..
T Consensus 121 ~~~~~~~~S-PDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~-~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~ 198 (695)
T 2bkl_A 121 VSLGTWAVS-WDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE-GGKYATPKWTPDSKGFYYEWLPTDPSIKVDER 198 (695)
T ss_dssp EEEEEEEEC-TTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS-CCTTCCCEECTTSSEEEEEECCCCTTSCGGGG
T ss_pred EEEEEEEEC-CCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC-cccccceEEecCCCEEEEEEecCCCCCccccC
Confidence 568899999 8999988 4444568999999998865 21111 1112678999 9999999988776
Q ss_pred -----EEEEEcCCCCCe-eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC-C--eEEEEECCCCCCCeeeeccccccee
Q 035558 108 -----VRVFDLRDKEHS-TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS-A--KVVVLDIRFPTLPVVELQRHQASVN 178 (253)
Q Consensus 108 -----i~i~d~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-~--~i~~~d~~~~~~~~~~~~~~~~~i~ 178 (253)
|++|++.++... ..+.....+...+..+.|+| ++++|+..+.++ . .|.++|..+. ....+..+...+.
T Consensus 199 ~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~--~~~~l~~~~~~~~ 275 (695)
T 2bkl_A 199 PGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEK--DFRLLVKGVGAKY 275 (695)
T ss_dssp GGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCS--SCEEEEECSSCCE
T ss_pred CCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCC--ceEEeecCCCceE
Confidence 999999887632 34444444545788999999 888888777665 1 3666665433 2455555666666
Q ss_pred EEEEecCCCCeEEEec---CCCcEEEEeccCCCCCCCCCCCCeeeccC--CCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 179 AIAWAPHSSCHICTAG---DDSQALIWDLSSMGQPVEGGLDPILAYTA--GAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 179 ~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
...+ +++. +++... .++.|.+||+.++.... ...+..+ ...+..++|+ ++..+++...++..++|.
T Consensus 276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~-----~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~ 346 (695)
T 2bkl_A 276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARAS-----WKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRV 346 (695)
T ss_dssp EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGG-----CEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccC-----CeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence 6666 6774 555554 35899999997764210 1233333 5568889998 555566777888888774
No 195
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.59 E-value=3.4e-12 Score=97.41 Aligned_cols=216 Identities=11% Similarity=0.077 Sum_probs=137.7
Q ss_pred CCCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558 2 CQKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT 79 (253)
Q Consensus 2 p~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 79 (253)
|.++.++.+... .|..|+..++ +. ..+. .. ..+.+++++ ++++++++ . ++.|.+||.++++...
T Consensus 22 ~~~~~l~~~d~~~~~i~~~d~~~~----~~-~~~~-~~-----~~~~~i~~~-~dG~l~v~-~-~~~l~~~d~~~g~~~~ 87 (297)
T 3g4e_A 22 EVSNSLLFVDIPAKKVCRWDSFTK----QV-QRVT-MD-----APVSSVALR-QSGGYVAT-I-GTKFCALNWKEQSAVV 87 (297)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTC----CE-EEEE-CS-----SCEEEEEEB-TTSSEEEE-E-TTEEEEEETTTTEEEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCC----cE-EEEe-CC-----CceEEEEEC-CCCCEEEE-E-CCeEEEEECCCCcEEE
Confidence 556777777653 9999998874 22 2232 22 568899999 78885554 4 5679999998776433
Q ss_pred eeec----ccccEEEEEec-CCCeEEEEeCC---------CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEE
Q 035558 80 QLIA----HDKEVYDIAWG-GVGVFASVSAD---------GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYM 145 (253)
Q Consensus 80 ~~~~----~~~~v~~~~~~-~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 145 (253)
.... ....+.++++. +++++++...+ ..-.+|.+........+... ......++|+| +++.+
T Consensus 88 ~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~---~~~pngi~~sp-dg~~l 163 (297)
T 3g4e_A 88 LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ---VDISNGLDWSL-DHKIF 163 (297)
T ss_dssp EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE---ESBEEEEEECT-TSCEE
T ss_pred EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec---cccccceEEcC-CCCEE
Confidence 2221 12457889999 88876655322 23455555533322222211 12567899999 88777
Q ss_pred EEEEeCCCeEEEEECC--CCCC----CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCee
Q 035558 146 ATIIMDSAKVVVLDIR--FPTL----PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPIL 219 (253)
Q Consensus 146 ~~~~~~~~~i~~~d~~--~~~~----~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 219 (253)
+++......|..||+. ++.. ....+..+...+..++++++| ++.++...++.|..||..+++... .
T Consensus 164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG~~~~-------~ 235 (297)
T 3g4e_A 164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTGKRLQ-------T 235 (297)
T ss_dssp EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEEECTTTCCEEE-------E
T ss_pred EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCceEEE-------E
Confidence 6655543349999974 3221 112233344567899999999 577777778889999998765332 3
Q ss_pred eccCCCceeEEEEc-CCCCceEEEE
Q 035558 220 AYTAGAEIEQLQWS-SSQPDWVAIA 243 (253)
Q Consensus 220 ~~~~~~~v~~~~~~-~~~~~~~~~~ 243 (253)
...+...+++++|. |+++.|+.++
T Consensus 236 i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 236 VKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EECSSSBEEEEEEESGGGCEEEEEE
T ss_pred EECCCCCceEEEEeCCCCCEEEEEc
Confidence 33445689999998 8877665443
No 196
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.59 E-value=8.4e-12 Score=94.87 Aligned_cols=222 Identities=9% Similarity=-0.021 Sum_probs=143.4
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee-e
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT-Q 80 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~ 80 (253)
++.++++.. + .|..|+.... .....+.... ..+.++++. +++.++++...++.|.+||. +++... .
T Consensus 67 ~g~l~v~~~~~~~i~~~~~~g~----~~~~~~~~~~-----~~~~~i~~~-~~g~l~v~~~~~~~i~~~d~-~g~~~~~~ 135 (299)
T 2z2n_A 67 DGEVWFTENAANKIGRITKKGI----IKEYTLPNPD-----SAPYGITEG-PNGDIWFTEMNGNRIGRITD-DGKIREYE 135 (299)
T ss_dssp TSCEEEEETTTTEEEEECTTSC----EEEEECSSTT-----CCEEEEEEC-TTSCEEEEETTTTEEEEECT-TCCEEEEE
T ss_pred CCCEEEeCCCCCeEEEECCCCc----EEEEeCCCcC-----CCceeeEEC-CCCCEEEEecCCceEEEECC-CCCEEEec
Confidence 456666655 4 7888987632 1111122222 568899998 78888887777889999998 454332 2
Q ss_pred eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
.......+..+++. ++.++++...++.|..||. +++... . ........+..+++++ ++.++++....+. |..||
T Consensus 136 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~-~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~-i~~~~ 210 (299)
T 2z2n_A 136 LPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE-F-KIPTPASGPVGITKGN-DDALWFVEIIGNK-IGRIT 210 (299)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-E-ECSSTTCCEEEEEECT-TSSEEEEETTTTE-EEEEC
T ss_pred CCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE-e-eCCCCCCcceeEEECC-CCCEEEEccCCce-EEEEC
Confidence 22344568899999 8888877777889999998 554222 2 1222334688999998 7776665544556 99999
Q ss_pred CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558 160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW 239 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 239 (253)
. +..........+...+.++++++++ +++++...++.|..||.. +.... .....+...+.++++ +++..+
T Consensus 211 ~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~~-g~~~~------~~~~~~~~~~~~i~~-~~g~l~ 280 (299)
T 2z2n_A 211 T-SGEITEFKIPTPNARPHAITAGAGI-DLWFTEWGANKIGRLTSN-NIIEE------YPIQIKSAEPHGICF-DGETIW 280 (299)
T ss_dssp T-TCCEEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEEETT-TEEEE------EECSSSSCCEEEEEE-CSSCEE
T ss_pred C-CCcEEEEECCCCCCCceeEEECCCC-CEEEeccCCceEEEECCC-CceEE------EeCCCCCCccceEEe-cCCCEE
Confidence 8 4442112223345678999999998 566666678999999983 22111 112244567899999 888755
Q ss_pred EEEEcCCcEEEEE
Q 035558 240 VAIAFSTKLQILR 252 (253)
Q Consensus 240 ~~~~~~~~i~vw~ 252 (253)
++.. .+.+..++
T Consensus 281 v~~~-~~~l~~~~ 292 (299)
T 2z2n_A 281 FAME-CDKIGKLT 292 (299)
T ss_dssp EEET-TTEEEEEE
T ss_pred EEec-CCcEEEEE
Confidence 5443 56665554
No 197
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.58 E-value=1.4e-12 Score=101.06 Aligned_cols=218 Identities=8% Similarity=-0.043 Sum_probs=141.2
Q ss_pred cEEEEEccCCccccceeeeecC-CCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEE
Q 035558 14 FLRVWRISDEDRRVELKSLLNG-NKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIA 92 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 92 (253)
.|.++|..++ +....+.. ............+.+. ++.++++...++.|.+||..+++.+..+. .......++
T Consensus 18 ~l~~~d~~t~----~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~ 90 (328)
T 3dsm_A 18 TLSYYDPATC----EVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIH 90 (328)
T ss_dssp EEEEEETTTT----EEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEE
T ss_pred eEEEEECCCC----EEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEE
Confidence 9999999886 44333210 0000111345677775 45566666678999999999999888775 346688999
Q ss_pred ec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccC--CCCCCeeEEEeeCCCCCEEEEEEe--CCCeEEEEECCCCCCCe
Q 035558 93 WG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESS--EPDTPLVRLGWNKQDPRYMATIIM--DSAKVVVLDIRFPTLPV 167 (253)
Q Consensus 93 ~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~--~~~~i~~~d~~~~~~~~ 167 (253)
++ ++..+++...++.|.+||..+.+....+.... ........+++ . ++. ++++.. ++. |.++|+.+.+. +
T Consensus 91 ~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~-lyv~~~~~~~~-v~viD~~t~~~-~ 165 (328)
T 3dsm_A 91 FLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKY-VYVNCWSYQNR-ILKIDTETDKV-V 165 (328)
T ss_dssp EEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTE-EEEEECTTCCE-EEEEETTTTEE-E
T ss_pred EeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCE-EEEEcCCCCCE-EEEEECCCCeE-E
Confidence 97 77555555489999999999886443333221 01113456666 2 444 444443 555 99999987653 4
Q ss_pred eeecccccceeEEEEecCCCCeEEEecCC----------CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC
Q 035558 168 VELQRHQASVNAIAWAPHSSCHICTAGDD----------SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP 237 (253)
Q Consensus 168 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 237 (253)
..+.. ......++++|+| ++++++..+ +.|.++|..+.+... .........+..++++|+++
T Consensus 166 ~~i~~-g~~p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~------~~~~~~g~~p~~la~~~d~~ 237 (328)
T 3dsm_A 166 DELTI-GIQPTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK------QFKFKLGDWPSEVQLNGTRD 237 (328)
T ss_dssp EEEEC-SSCBCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE------EEECCTTCCCEEEEECTTSC
T ss_pred EEEEc-CCCccceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCCCeEEE------EEecCCCCCceeEEEecCCC
Confidence 44443 2345788999998 566666554 789999998765321 11122234789999999988
Q ss_pred ceEEEEcCCcEEEEEC
Q 035558 238 DWVAIAFSTKLQILRV 253 (253)
Q Consensus 238 ~~~~~~~~~~i~vw~l 253 (253)
.++++.. .+.+|++
T Consensus 238 ~lyv~~~--~v~~~d~ 251 (328)
T 3dsm_A 238 TLYWINN--DIWRMPV 251 (328)
T ss_dssp EEEEESS--SEEEEET
T ss_pred EEEEEcc--EEEEEEC
Confidence 7766544 7777763
No 198
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.58 E-value=1.6e-12 Score=107.41 Aligned_cols=187 Identities=15% Similarity=0.073 Sum_probs=139.5
Q ss_pred CCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcC--CCCCeeeeeccCCCCC
Q 035558 54 EPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLR--DKEHSTIIYESSEPDT 130 (253)
Q Consensus 54 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~ 130 (253)
...++++...++.|.++|..+++.+..+.. ...+..+.++ +++++++++.|+.|.+||+. +.+....+.. ..
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~----G~ 240 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI----GS 240 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC----CS
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec----CC
Confidence 345677777889999999999998888774 3456789999 99999999999999999996 5553333322 12
Q ss_pred CeeEEEee----CCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc----------ccc-ceeEEEEecCCCCeEEEecC
Q 035558 131 PLVRLGWN----KQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR----------HQA-SVNAIAWAPHSSCHICTAGD 195 (253)
Q Consensus 131 ~i~~~~~~----~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~----------~~~-~i~~~~~~~~~~~~l~~~~~ 195 (253)
....++|+ | ++++++++......+.++|..+.+ ++..+.. |.. .+..+..+++++.+++....
T Consensus 241 ~P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~-~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~ 318 (567)
T 1qks_A 241 EARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 318 (567)
T ss_dssp EEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCceeEEccccCC-CCCEEEEEEccCCeEEEEECCCCc-EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence 46789999 6 899999888876669999988765 3544432 112 57788889988667777788
Q ss_pred CCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEE-cCCcEEEEEC
Q 035558 196 DSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA-FSTKLQILRV 253 (253)
Q Consensus 196 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~vw~l 253 (253)
+|.|.++|......+. ............+.|+|+++++++++ .++.|.++++
T Consensus 319 ~g~v~~vd~~~~~~~~------v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~ 371 (567)
T 1qks_A 319 TGKILLVDYTDLNNLK------TTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDT 371 (567)
T ss_dssp TTEEEEEETTCSSEEE------EEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred CCeEEEEecCCCccce------eeeeeccccccCceECCCCCEEEEEeCCCCeEEEEEC
Confidence 8999999998754322 22334455677899999999887554 6788988874
No 199
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.58 E-value=6.3e-13 Score=99.84 Aligned_cols=193 Identities=10% Similarity=-0.021 Sum_probs=129.1
Q ss_pred CeeEEEecCCCCCEEE-EEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeee
Q 035558 44 PLTSFDWNEAEPRRIG-TSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTI 121 (253)
Q Consensus 44 ~v~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~ 121 (253)
...+++++ +++++++ +...++.|.+|+..+.........+...+.++++. +++++++.. ++.|..||........
T Consensus 25 ~p~~i~~~-~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~- 101 (270)
T 1rwi_B 25 SPSGVAVD-SAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV- 101 (270)
T ss_dssp CEEEEEEC-TTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE-
T ss_pred CccceEEC-CCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee-
Confidence 67789999 7888776 44678899999986554332222233567889999 878666655 8899999987664321
Q ss_pred eeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEE
Q 035558 122 IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALI 201 (253)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i 201 (253)
. . ......+..++++| +++++++...++. |.+|+..+... ..........+.+++++|++ +++++...++.|.+
T Consensus 102 ~-~-~~~~~~p~~i~~~~-~g~l~v~~~~~~~-i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~ 175 (270)
T 1rwi_B 102 L-P-FDGLNYPEGLAVDT-QGAVYVADRGNNR-VVKLAAGSKTQ-TVLPFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVK 175 (270)
T ss_dssp C-C-CCSCSSEEEEEECT-TCCEEEEEGGGTE-EEEECTTCCSC-EECCCCSCCSCCCEEECTTC-CEEEEEGGGTEEEE
T ss_pred e-e-cCCcCCCcceEECC-CCCEEEEECCCCE-EEEEECCCcee-EeeccccCCCceeEEEeCCC-CEEEEECCCCEEEE
Confidence 1 1 12223688999999 7876666555666 99997655332 22222233467889999998 57777777899999
Q ss_pred EeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 202 WDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 202 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
||........ ....+...+.++++++++..+++...++.|.+|+
T Consensus 176 ~~~~~~~~~~-------~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~ 219 (270)
T 1rwi_B 176 LEAESNNQVV-------LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLL 219 (270)
T ss_dssp ECTTTCCEEE-------CCCSSCCSEEEEEECTTCCEEEEETTTSCEEEEC
T ss_pred EecCCCceEe-------ecccCCCCceEEEECCCCCEEEEECCCCcEEEEc
Confidence 9987654221 1122336788999999996555666678888886
No 200
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.57 E-value=1.9e-11 Score=92.90 Aligned_cols=223 Identities=8% Similarity=-0.061 Sum_probs=146.0
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceee-eecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee-
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKS-LLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT- 79 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~- 79 (253)
++.+.++.. + .|.+|+.. + +... .+.... ..+.++++. ++++++++...++.|..+|.. ++...
T Consensus 30 ~g~l~v~~~~~~~v~~~~~~-~----~~~~~~~~~~~-----~~~~~i~~~-~~g~l~v~~~~~~~v~~~d~~-g~~~~~ 97 (300)
T 2qc5_A 30 DGKVWFTQHKANKISSLDQS-G----RIKEFEVPTPD-----AKVMCLIVS-SLGDIWFTENGANKIGKLSKK-GGFTEY 97 (300)
T ss_dssp TSCEEEEETTTTEEEEECTT-S----CEEEEECSSTT-----CCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred CCCEEEEcCCCCeEEEECCC-C----ceEEEECCCCC-----CcceeEEEC-CCCCEEEEecCCCeEEEECCC-CCeEEe
Confidence 456666654 4 89999887 3 2222 122222 568899998 788877777667899999988 55322
Q ss_pred eeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558 80 QLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL 158 (253)
Q Consensus 80 ~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~ 158 (253)
.+......+.++++. +++++++...++.|..+|.. ++.. .. ........+..+++.+ +++++++...++. |..+
T Consensus 98 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~-~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~-i~~~ 172 (300)
T 2qc5_A 98 PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EY-DLPNKGSYPAFITLGS-DNALWFTENQNNS-IGRI 172 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EE-ECSSTTCCEEEEEECT-TSSEEEEETTTTE-EEEE
T ss_pred cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-Ec-cCCCCCCCceeEEECC-CCCEEEEecCCCe-EEEE
Confidence 222234678899999 88888877778899999987 4422 11 1222334788999998 7775555444555 9999
Q ss_pred ECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCc
Q 035558 159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPD 238 (253)
Q Consensus 159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 238 (253)
|. +..........+...+..+++++++ .++++....+.|.+|+. .+.... .....+...+.++++.+++..
T Consensus 173 ~~-~g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~~------~~~~~~~~~~~~i~~d~~g~l 243 (300)
T 2qc5_A 173 TN-TGKLEEYPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITT-TGEISE------YDIPTPNARPHAITAGKNSEI 243 (300)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEEE------EECSSTTCCEEEEEECSTTCE
T ss_pred CC-CCcEEEeeCCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcC-CCcEEE------EECCCCCCCceEEEECCCCCE
Confidence 98 3332111222334568899999998 57777667788999998 333111 112234567889999999985
Q ss_pred eEEEEcCCcEEEEE
Q 035558 239 WVAIAFSTKLQILR 252 (253)
Q Consensus 239 ~~~~~~~~~i~vw~ 252 (253)
+++...++.|..++
T Consensus 244 ~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 244 WFTEWGANQIGRIT 257 (300)
T ss_dssp EEEETTTTEEEEEC
T ss_pred EEeccCCCeEEEEC
Confidence 55555567787775
No 201
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.56 E-value=1.6e-13 Score=107.50 Aligned_cols=164 Identities=11% Similarity=0.086 Sum_probs=119.0
Q ss_pred CceEEeecC-cEEEEEccCCcc-------ccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce
Q 035558 5 PDLLATSSD-FLRVWRISDEDR-------RVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA 76 (253)
Q Consensus 5 ~~~l~~~~~-~v~iw~~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 76 (253)
..++++|+. .+.+|++....+ ..+... ...+. . |+.++| +++.|+++ .++.|++||+.+..
T Consensus 49 ~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~-~~~lp-----~-V~~l~f---d~~~L~v~-~~~~l~v~dv~sl~ 117 (388)
T 1xip_A 49 KSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKW-EKEIP-----D-VIFVCF---HGDQVLVS-TRNALYSLDLEELS 117 (388)
T ss_dssp TTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSE-EEECT-----T-EEEEEE---ETTEEEEE-ESSEEEEEESSSTT
T ss_pred CCEEEEeCCCEEEEEEhhHhhhhhccccccccceE-EeeCC-----C-eeEEEE---CCCEEEEE-cCCcEEEEEchhhh
Confidence 445666664 888999875410 011111 12243 6 999999 68899988 78999999998777
Q ss_pred eeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558 77 VDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV 156 (253)
Q Consensus 77 ~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~ 156 (253)
.......|..++.++.+..++ ++++..||.|.+||+.+..... ....|++++|+| .| ++.+..||. ++
T Consensus 118 ~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v~WSp-kG--~~vg~~dg~-i~ 185 (388)
T 1xip_A 118 EFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ-------LAQNVTSFDVTN-SQ--LAVLLKDRS-FQ 185 (388)
T ss_dssp CEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE-------EEESEEEEEECS-SE--EEEEETTSC-EE
T ss_pred ccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc-------ccCCceEEEEcC-Cc--eEEEEcCCc-EE
Confidence 666666788889888887222 8889999999999999776422 123899999999 66 677888888 99
Q ss_pred EEECCCCCCC-eeee------c---ccccceeEEEEecCCCCeEEE
Q 035558 157 VLDIRFPTLP-VVEL------Q---RHQASVNAIAWAPHSSCHICT 192 (253)
Q Consensus 157 ~~d~~~~~~~-~~~~------~---~~~~~i~~~~~~~~~~~~l~~ 192 (253)
+|+....... ...+ . +|...|.++.|.+++ .+|++
T Consensus 186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~-~flv~ 230 (388)
T 1xip_A 186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ-DFLAV 230 (388)
T ss_dssp EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS-EEEEE
T ss_pred EEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC-eEEEE
Confidence 9988764411 2334 2 367889999999988 57765
No 202
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.54 E-value=1.3e-12 Score=98.62 Aligned_cols=180 Identities=9% Similarity=-0.066 Sum_probs=129.6
Q ss_pred CCCEEEEEeCCCeEEEEeccCceeeeeeeccc-ccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCC
Q 035558 54 EPRRIGTSSIDTTCTIWDIEREAVDTQLIAHD-KEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTP 131 (253)
Q Consensus 54 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 131 (253)
.+++|++++.++.|++||.++++.+..+..+. ..+.++.+. ++++++ +.++.|..||. +++....+.. .....
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~--~~~~~ 78 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA--PAGCE 78 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC--CTTCE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC--CCCcc
Confidence 36789999999999999999999999888765 468889999 888888 45778999998 6653332222 11236
Q ss_pred eeEEEeeCCCCCEEEEEEe-CCCeEEEEECCCCCCCeeeec------ccccceeEEEEecCCCCeEEEecCCCcEEEEec
Q 035558 132 LVRLGWNKQDPRYMATIIM-DSAKVVVLDIRFPTLPVVELQ------RHQASVNAIAWAPHSSCHICTAGDDSQALIWDL 204 (253)
Q Consensus 132 i~~~~~~~~~~~~l~~~~~-~~~~i~~~d~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~ 204 (253)
+.++.+.| +++++++.+. ++. +..+|. +++ .+..+. .+......+++.++| .++++...++.|..||.
T Consensus 79 ~~~~~~~~-dG~~lv~~~~~~~~-v~~vd~-~Gk-~l~~~~~~~~~~~~~~~~~~v~~~~~G-~~lv~~~~~~~v~~~d~ 153 (276)
T 3no2_A 79 MQTARILP-DGNALVAWCGHPST-ILEVNM-KGE-VLSKTEFETGIERPHAQFRQINKNKKG-NYLVPLFATSEVREIAP 153 (276)
T ss_dssp EEEEEECT-TSCEEEEEESTTEE-EEEECT-TSC-EEEEEEECCSCSSGGGSCSCCEECTTS-CEEEEETTTTEEEEECT
T ss_pred ccccEECC-CCCEEEEecCCCCE-EEEEeC-CCC-EEEEEeccCCCCcccccccCceECCCC-CEEEEecCCCEEEEECC
Confidence 78889999 8999888776 544 777775 333 233332 222345567889999 69999999999999998
Q ss_pred cCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 205 SSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
. ++.. ........+.++...+++..+++...++.|..++
T Consensus 154 ~-G~~~--------w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d 192 (276)
T 3no2_A 154 N-GQLL--------NSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLN 192 (276)
T ss_dssp T-SCEE--------EEEECSSCCCEEEECTTSCEEEECBTTSEEEEEC
T ss_pred C-CCEE--------EEEECCCCccceeEcCCCCEEEEeCCCCeEEEEe
Confidence 7 6532 2222234566788889988677766666776664
No 203
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.51 E-value=9.5e-11 Score=92.22 Aligned_cols=211 Identities=10% Similarity=0.021 Sum_probs=129.0
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe----------CCCeEEEEeccCceeeeeeec
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS----------IDTTCTIWDIEREAVDTQLIA 83 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~ 83 (253)
.|.++|..++ +.+..+.... .+ .+.++ |++++++.+. .++.|.+||..+.+.+..+..
T Consensus 48 ~v~v~D~~t~----~~~~~i~~g~-----~p--~i~~s-pDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~ 115 (373)
T 2mad_H 48 QQWVLDAGSG----SILGHVNGGF-----LP--NPVAA-HSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIEL 115 (373)
T ss_pred EEEEEECCCC----eEEEEecCCC-----CC--CeEEC-CCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEEC
Confidence 6799999886 6666665543 44 89999 8999888875 367899999998887766542
Q ss_pred c-------cccEEEEEec-CCCeEEEEeC--CCcEEEEEcCCCCCeee-eeccCCCCCCeeEEEeeCCCCCEEEEEEeCC
Q 035558 84 H-------DKEVYDIAWG-GVGVFASVSA--DGSVRVFDLRDKEHSTI-IYESSEPDTPLVRLGWNKQDPRYMATIIMDS 152 (253)
Q Consensus 84 ~-------~~~v~~~~~~-~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 152 (253)
. ......+.++ ++++|+++.. ++.|.++| .+++.... +.. .. ++.+.|.....+++.+.++
T Consensus 116 ~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~---~~----~~~~~~~~~~~~~~~~~dg 187 (373)
T 2mad_H 116 PDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS---PT----CYHIHPGAPSTFYLLCAQG 187 (373)
T ss_pred CCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC---Cc----eEEEEeCCCceEEEEcCCC
Confidence 2 1234578999 9999998874 57899999 88764433 211 00 1122221112222222222
Q ss_pred C----------------------------------------------eEEEEECCCCCCC-eeeecc----------ccc
Q 035558 153 A----------------------------------------------KVVVLDIRFPTLP-VVELQR----------HQA 175 (253)
Q Consensus 153 ~----------------------------------------------~i~~~d~~~~~~~-~~~~~~----------~~~ 175 (253)
. .+.+.|+...... +..+.. ...
T Consensus 188 ~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~ 267 (373)
T 2mad_H 188 GLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPG 267 (373)
T ss_pred CEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecC
Confidence 2 1444554332110 111100 011
Q ss_pred ceeEEEEecCCCCeEEEecC----------CCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC-ceEEEE-
Q 035558 176 SVNAIAWAPHSSCHICTAGD----------DSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP-DWVAIA- 243 (253)
Q Consensus 176 ~i~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~- 243 (253)
....++++|++. .++++.. ++.|.++|+.+.+... ..........++|+|+++ .++++.
T Consensus 268 g~~~~~~s~d~~-~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~--------~i~~g~~p~~i~~s~Dg~~~l~v~~~ 338 (373)
T 2mad_H 268 GWQQVAYLKSSD-GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS--------QISLGHDVDAISVAQDGGPDLYALSA 338 (373)
T ss_pred ceEeEEECCCCC-EEEEEeccCCcccccCCCCeEEEEECCCCEEEE--------EEECCCCcCeEEECCCCCeEEEEEcC
Confidence 233477888884 5555432 3579999998876432 223344688999999998 666666
Q ss_pred cCCcEEEEEC
Q 035558 244 FSTKLQILRV 253 (253)
Q Consensus 244 ~~~~i~vw~l 253 (253)
.++.|.++++
T Consensus 339 ~~~~V~ViD~ 348 (373)
T 2mad_H 339 GTEVLHIYDA 348 (373)
T ss_pred CCCeEEEEEC
Confidence 5899999874
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.50 E-value=7.7e-12 Score=107.13 Aligned_cols=197 Identities=12% Similarity=0.076 Sum_probs=129.8
Q ss_pred CCeeEEEecCCCCCEEEEEeCC-----CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCc---------
Q 035558 43 GPLTSFDWNEAEPRRIGTSSID-----TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGS--------- 107 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~--------- 107 (253)
..+..++|+ |++++|+.+..+ ..|++||+.+++.+... .+...+..++|+ + +.|+.++.++.
T Consensus 163 ~~~~~~~~S-PDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 163 TALDAWAAS-DDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp EEEEEEEEC-TTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------C
T ss_pred EEEEeEEEC-CCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccC
Confidence 368899999 899988877543 36999999998865431 122223578999 8 88888877654
Q ss_pred -----EEEEEcCCCCCe-eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC----CeEEEEECCCCCCC-eeeecccccc
Q 035558 108 -----VRVFDLRDKEHS-TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS----AKVVVLDIRFPTLP-VVELQRHQAS 176 (253)
Q Consensus 108 -----i~i~d~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~----~~i~~~d~~~~~~~-~~~~~~~~~~ 176 (253)
|++|++.++... ..+.....+...+..+.|+| ++++|+..+.++ ..|++||+.++... ...+..+...
T Consensus 240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 889999776532 23444333333588999999 898888877643 24999999875212 3445445544
Q ss_pred eeEEEEecCCCCeEEEecC----CCcEEEEeccCCC-CCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEE
Q 035558 177 VNAIAWAPHSSCHICTAGD----DSQALIWDLSSMG-QPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQIL 251 (253)
Q Consensus 177 i~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw 251 (253)
..... +|++. .|+..+. ++.|.+||+.++. ... .....+...+.+++|+ .+..+++...++..++|
T Consensus 319 ~~~~~-~~dg~-~l~~~s~~~~~~~~l~~~d~~~~~~~~~------~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 389 (741)
T 1yr2_A 319 QWDFV-DGVGD-QLWFVSGDGAPLKKIVRVDLSGSTPRFD------TVVPESKDNLESVGIA-GNRLFASYIHDAKSQVL 389 (741)
T ss_dssp CEEEE-EEETT-EEEEEECTTCTTCEEEEEECSSSSCEEE------EEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEE
T ss_pred eEEEE-eccCC-EEEEEECCCCCCCEEEEEeCCCCccccE------EEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 44443 48884 6655554 3559999987642 111 1233445567778887 44445567778877776
Q ss_pred E
Q 035558 252 R 252 (253)
Q Consensus 252 ~ 252 (253)
.
T Consensus 390 ~ 390 (741)
T 1yr2_A 390 A 390 (741)
T ss_dssp E
T ss_pred E
Confidence 4
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.49 E-value=1.1e-10 Score=88.59 Aligned_cols=221 Identities=11% Similarity=-0.022 Sum_probs=141.7
Q ss_pred CCceEEeec-C-cEEEEEccCCcccccee-eeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee-
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELK-SLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT- 79 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~- 79 (253)
++.+.++.. + .|..+|.. + +.. ..+.... ..+.++++. ++++++++...++.|..+|.. ++...
T Consensus 72 ~g~l~v~~~~~~~v~~~d~~-g----~~~~~~~~~~~-----~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-g~~~~~ 139 (300)
T 2qc5_A 72 LGDIWFTENGANKIGKLSKK-G----GFTEYPLPQPD-----SGPYGITEG-LNGDIWFTQLNGDRIGKLTAD-GTIYEY 139 (300)
T ss_dssp TSCEEEEETTTTEEEEECTT-S----CEEEEECSSTT-----CCEEEEEEC-STTCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred CCCEEEEecCCCeEEEECCC-C----CeEEecCCCCC-----CCCccceEC-CCCCEEEEccCCCeEEEECCC-CCEEEc
Confidence 455666655 4 78888877 3 222 1122222 468899998 788888777668899999987 55432
Q ss_pred eeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558 80 QLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL 158 (253)
Q Consensus 80 ~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~ 158 (253)
.+......+..+++. +++++++...++.|..+|. +++.. .. ........+..+++++ ++++.++....+. |.+|
T Consensus 140 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~-~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~-i~~~ 214 (300)
T 2qc5_A 140 DLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLE-EY-PLPTNAAAPVGITSGN-DGALWFVEIMGNK-IGRI 214 (300)
T ss_dssp ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EE-ECSSTTCCEEEEEECT-TSSEEEEETTTTE-EEEE
T ss_pred cCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEE-Ee-eCCCCCCCcceEEECC-CCCEEEEccCCCE-EEEE
Confidence 222234578899998 8887777766888999998 44422 22 2222334688999998 7776665544555 9999
Q ss_pred ECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCc
Q 035558 159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPD 238 (253)
Q Consensus 159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 238 (253)
|. +.......+..+...+.++++++++ +++++...++.|..||.. +.... .........+.++++.+++..
T Consensus 215 ~~-~g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~-g~~~~------~~~~~~~~~~~~i~~~~~g~l 285 (300)
T 2qc5_A 215 TT-TGEISEYDIPTPNARPHAITAGKNS-EIWFTEWGANQIGRITND-NTIQE------YQLQTENAEPHGITFGKDGSV 285 (300)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEEE------EECCSTTCCCCCEEECTTSCE
T ss_pred cC-CCcEEEEECCCCCCCceEEEECCCC-CEEEeccCCCeEEEECCC-CcEEE------EECCccCCccceeEeCCCCCE
Confidence 98 3332112223345668899999998 566666677999999983 32111 112223466889999999874
Q ss_pred eEEEEcCCcEEEEE
Q 035558 239 WVAIAFSTKLQILR 252 (253)
Q Consensus 239 ~~~~~~~~~i~vw~ 252 (253)
+++ +.. .|..++
T Consensus 286 ~v~-~~~-~i~~~~ 297 (300)
T 2qc5_A 286 WFA-LKC-KIGKLN 297 (300)
T ss_dssp EEE-CSS-EEEEEE
T ss_pred EEE-ccC-ceEEeC
Confidence 444 434 555554
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.48 E-value=9.6e-12 Score=106.56 Aligned_cols=225 Identities=10% Similarity=0.001 Sum_probs=138.8
Q ss_pred CCCceEEeec-----C--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCe---------
Q 035558 3 QKPDLLATSS-----D--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTT--------- 66 (253)
Q Consensus 3 ~~~~~l~~~~-----~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--------- 66 (253)
++|++||.+. + .|++||+.++ +.+.. ..+. ..+..++|+ ++ +.|+.++.++.
T Consensus 172 PDG~~la~~~~~~G~e~~~i~v~dl~tg----~~~~~-~~~~-----~~~~~~~ws-pD-~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 172 DDGRLLAYSVQDGGSDWRTVKFVGVADG----KPLAD-ELKW-----VKFSGLAWL-GN-DALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp TTSSEEEEEEEETTCSEEEEEEEETTTC----CEEEE-EEEE-----EESCCCEES-TT-SEEEEEECCCC--------C
T ss_pred CCCCEEEEEEcCCCCceEEEEEEECCCC----CCCCc-cCCC-----ceeccEEEE-CC-CEEEEEEecCcccccccccC
Confidence 3556665543 2 6999999986 33322 1111 223578999 77 88887776554
Q ss_pred -----EEEEeccCcee----eeeeecccccEEEEEec-CCCeEEEEeCCC-----cEEEEEcCCC--CCeeeeeccCCCC
Q 035558 67 -----CTIWDIEREAV----DTQLIAHDKEVYDIAWG-GVGVFASVSADG-----SVRVFDLRDK--EHSTIIYESSEPD 129 (253)
Q Consensus 67 -----i~vwd~~~~~~----~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg-----~i~i~d~~~~--~~~~~~~~~~~~~ 129 (253)
|++|++.++.. +.....+...+..+.|+ ++++|+..+.++ .|++||+.++ +....+....
T Consensus 240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--- 316 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL--- 316 (741)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS---
T ss_pred CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC---
Confidence 89999876652 22222233458899999 999888877544 7999999876 3123333221
Q ss_pred CCeeEEEeeCCCCCEEEEEEeCC---CeEEEEECCCCC-CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEecc
Q 035558 130 TPLVRLGWNKQDPRYMATIIMDS---AKVVVLDIRFPT-LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLS 205 (253)
Q Consensus 130 ~~i~~~~~~~~~~~~l~~~~~~~---~~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 205 (253)
....... .| +++.|+..+.++ ..|.+||+.+.. .....+..+...+..+.+. ++ .++++...|+..+||.+.
T Consensus 317 ~~~~~~~-~~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 317 KAQWDFV-DG-VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GN-RLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp SSCEEEE-EE-ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BT-EEEEEEEETTEEEEEEEE
T ss_pred CceEEEE-ec-cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEe
Confidence 1333333 46 777777766532 249999987642 2233344445556777887 33 588888899988888765
Q ss_pred C-CCCCCCCCCCCeeec-cCCCceeEEEEcCCCCceEEE-E---cCCcEEEEEC
Q 035558 206 S-MGQPVEGGLDPILAY-TAGAEIEQLQWSSSQPDWVAI-A---FSTKLQILRV 253 (253)
Q Consensus 206 ~-~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~-~---~~~~i~vw~l 253 (253)
. +... ..+. .+...+..++++|+++.++.. + ..+.+.+|++
T Consensus 393 ~~g~~~-------~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 393 LDGKPA-------GAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP 439 (741)
T ss_dssp TTSCEE-------EECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred CCCCce-------eeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 2 2211 1222 246678999999998766532 2 2256777764
No 207
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.47 E-value=2e-10 Score=88.77 Aligned_cols=213 Identities=5% Similarity=-0.055 Sum_probs=132.0
Q ss_pred CCCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558 2 CQKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT 79 (253)
Q Consensus 2 p~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 79 (253)
|+++.++.+... .|..|+..++ +. ..+. .. ..+.++.|+ ++++++++. .+ .|.+||..+++...
T Consensus 58 ~~~~~l~~~d~~~~~i~~~d~~~~----~~-~~~~-~~-----~~v~~i~~~-~dg~l~v~~-~~-gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 58 PASGTAWWFNILERELHELHLASG----RK-TVHA-LP-----FMGSALAKI-SDSKQLIAS-DD-GLFLRDTATGVLTL 123 (326)
T ss_dssp TTTTEEEEEEGGGTEEEEEETTTT----EE-EEEE-CS-----SCEEEEEEE-ETTEEEEEE-TT-EEEEEETTTCCEEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCC----cE-EEEE-CC-----CcceEEEEe-CCCeEEEEE-CC-CEEEEECCCCcEEE
Confidence 555667777653 8999998774 22 2222 22 568899999 778776654 44 49999998776432
Q ss_pred eeec----ccccEEEEEec-CCCeEEEEeC------CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558 80 QLIA----HDKEVYDIAWG-GVGVFASVSA------DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI 148 (253)
Q Consensus 80 ~~~~----~~~~v~~~~~~-~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 148 (253)
.... ....+.+++++ +++++++... .+.|..++ +++ ...+.. .......++|+| +++.++.+
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~-~~~~~~---~~~~~~~i~~s~-dg~~lyv~ 196 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK-VTKLFA---DISIPNSICFSP-DGTTGYFV 196 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE-EEEEEE---EESSEEEEEECT-TSCEEEEE
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc-EEEeeC---CCcccCCeEEcC-CCCEEEEE
Confidence 2211 12468899999 8887665542 23455555 332 222211 112567899999 88777666
Q ss_pred EeCCCeEEEEECC--CC-CC----CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeec
Q 035558 149 IMDSAKVVVLDIR--FP-TL----PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAY 221 (253)
Q Consensus 149 ~~~~~~i~~~d~~--~~-~~----~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 221 (253)
......|.+||+. ++ .. ....+......+..++++++| .+.++...++.|..||.. ++.. ....
T Consensus 197 ~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~~-g~~~-------~~i~ 267 (326)
T 2ghs_A 197 DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTD-GNHI-------ARYE 267 (326)
T ss_dssp ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECTT-CCEE-------EEEE
T ss_pred ECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECCC-CCEE-------EEEE
Confidence 5443349999986 33 21 111222234567889999998 566666567889999873 3321 1333
Q ss_pred cCCCceeEEEEc-CCCCceEEEEc
Q 035558 222 TAGAEIEQLQWS-SSQPDWVAIAF 244 (253)
Q Consensus 222 ~~~~~v~~~~~~-~~~~~~~~~~~ 244 (253)
.+...+.+++|+ |++..++.++.
T Consensus 268 ~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 268 VPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp CSCSBEEEEEEESTTSCEEEEEEB
T ss_pred CCCCCcEEEEEecCCCCEEEEEec
Confidence 445679999998 88776654443
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.46 E-value=2.1e-10 Score=87.52 Aligned_cols=200 Identities=11% Similarity=0.068 Sum_probs=127.7
Q ss_pred CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeee
Q 035558 44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTII 122 (253)
Q Consensus 44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 122 (253)
-.-+..|+|.++.++++...++.|+.||..+++. ..+. ....+.+++++ +++++++ . ++.|.+||..+++.....
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~ 89 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLA 89 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEE
Confidence 3457889955677778877889999999987764 2232 45678999999 8885554 3 567999999876532222
Q ss_pred eccC-CCCCCeeEEEeeCCCCCEEEEEEeC---------CCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEE
Q 035558 123 YESS-EPDTPLVRLGWNKQDPRYMATIIMD---------SAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICT 192 (253)
Q Consensus 123 ~~~~-~~~~~i~~~~~~~~~~~~l~~~~~~---------~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 192 (253)
.... .....+..++++| +++++++.... .. -.+|.+..... ...+..+....+.++|+|++..++++
T Consensus 90 ~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~-~~l~~~d~~g~-~~~~~~~~~~pngi~~spdg~~lyv~ 166 (297)
T 3g4e_A 90 TVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQ-GALYSLFPDHH-VKKYFDQVDISNGLDWSLDHKIFYYI 166 (297)
T ss_dssp ECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTC-EEEEEECTTSC-EEEEEEEESBEEEEEECTTSCEEEEE
T ss_pred ecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCC-cEEEEEECCCC-EEEEeeccccccceEEcCCCCEEEEe
Confidence 2111 1223578899999 88866654332 12 34554443222 33344444567899999999434466
Q ss_pred ecCCCcEEEEecc--CCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 193 AGDDSQALIWDLS--SMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 193 ~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
.+.++.|.+|++. ++.... .........+...+..+++.++|..+++...++.|..|+
T Consensus 167 ~~~~~~i~~~~~d~~~G~~~~--~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d 226 (297)
T 3g4e_A 167 DSLSYSVDAFDYDLQTGQISN--RRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLD 226 (297)
T ss_dssp EGGGTEEEEEEECTTTCCEEE--EEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEEC
T ss_pred cCCCCcEEEEeccCCCCcccC--cEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEc
Confidence 6778999999974 332100 000011112345788999999998777777777788875
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.46 E-value=5.2e-11 Score=94.89 Aligned_cols=194 Identities=9% Similarity=-0.032 Sum_probs=131.3
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCC--cEEEEEcCCCCCe
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADG--SVRVFDLRDKEHS 119 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg--~i~i~d~~~~~~~ 119 (253)
.....++|+ ++++++++...++.|++||.++++........ .... ++|+ +++.|+++..++ .|.+++.......
T Consensus 131 ~~P~~la~d-~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAV-GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEEC-STTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEe-CCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 357789999 78888887777899999999887765544432 2334 8999 888888888766 7889988766543
Q ss_pred eeeeccCC-CCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeee-----cccccce--eEEEEecCCCCeEE
Q 035558 120 TIIYESSE-PDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVEL-----QRHQASV--NAIAWAPHSSCHIC 191 (253)
Q Consensus 120 ~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~~~i--~~~~~~~~~~~~l~ 191 (253)
..+..... ....+.+++++| ++..|+++..++. |+.||..+.. ...+ .++...- ..++|+|++..+++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p-~~g~lyv~d~~~~-I~~~d~~~~~--~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDE-TEEWLYFVDSNKN-FGRFNVKTQE--VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECT-TSSEEEEECTTCE-EEEEETTTCC--EEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred EEeeeccchhcCCcEEEEEeC-CCCeEEEEECCCc-EEEEECCCCC--EEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence 33311111 234678899999 4445555665565 9999998654 2222 1122222 39999996436777
Q ss_pred EecCCCcEEEEeccCCCCCCCCCCCCeeeccC---------------CCceeEEEEcCCCCceEEEE-cCCcEEEEE
Q 035558 192 TAGDDSQALIWDLSSMGQPVEGGLDPILAYTA---------------GAEIEQLQWSSSQPDWVAIA-FSTKLQILR 252 (253)
Q Consensus 192 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~~~~~-~~~~i~vw~ 252 (253)
+-..++.|+.|+...... ...++ -.....++++|++..+++-. .++.|+.|+
T Consensus 284 ~d~~~~~I~~~~~~g~~~---------~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~ 351 (409)
T 3hrp_A 284 SDQNLSSVYKITPDGECE---------WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLD 351 (409)
T ss_dssp EETTTTEEEEECTTCCEE---------EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEE
T ss_pred EeCCCCEEEEEecCCCEE---------EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEE
Confidence 777889999998764311 11111 24578999999998666666 778888886
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.43 E-value=1.2e-10 Score=89.19 Aligned_cols=200 Identities=7% Similarity=-0.066 Sum_probs=127.9
Q ss_pred CCeeEEEecCCCCCEEEE-------EeCCCeEEEEeccCceeeeeee----cccccEEEEEec-C-CCeEEEEeCCCcEE
Q 035558 43 GPLTSFDWNEAEPRRIGT-------SSIDTTCTIWDIEREAVDTQLI----AHDKEVYDIAWG-G-VGVFASVSADGSVR 109 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~-------~~~dg~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~-~-~~~l~~~~~dg~i~ 109 (253)
....+++|+ +++.++++ +..++.|.+||..+++...... ++...+.++++. + ++++++.. .+.|.
T Consensus 18 ~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~ 95 (314)
T 1pjx_A 18 PGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLL 95 (314)
T ss_dssp TTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEE
T ss_pred CCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEE
Confidence 356789999 78888777 5678899999987776432211 144678899998 7 65555544 44789
Q ss_pred EEEcCCCCCeee-eecc-CCCCCCeeEEEeeCCCCCEEEEEEeC---------------CCeEEEEECCCCCCCeeeecc
Q 035558 110 VFDLRDKEHSTI-IYES-SEPDTPLVRLGWNKQDPRYMATIIMD---------------SAKVVVLDIRFPTLPVVELQR 172 (253)
Q Consensus 110 i~d~~~~~~~~~-~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~~---------------~~~i~~~d~~~~~~~~~~~~~ 172 (253)
+||.. ++.... .... ......+..+++++ +++++++...+ +. |..+|.. .+ ...+..
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~-g~--~~~~~~ 169 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGS-IYCFTTD-GQ--MIQVDT 169 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEE-EEEECTT-SC--EEEEEE
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCe-EEEECCC-CC--EEEecc
Confidence 99988 542211 1111 11123578999999 78777766544 34 7777765 22 333333
Q ss_pred cccceeEEEEe----cCCCCeEEEecCCCcEEEEecc-CCCCCCCCCCCCeeeccCC-CceeEEEEcCCCCceEEEEcCC
Q 035558 173 HQASVNAIAWA----PHSSCHICTAGDDSQALIWDLS-SMGQPVEGGLDPILAYTAG-AEIEQLQWSSSQPDWVAIAFST 246 (253)
Q Consensus 173 ~~~~i~~~~~~----~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~ 246 (253)
+......++|+ |++..++++...++.|.+||+. .+.... .........+. ..+..+++++++..+++...++
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~--~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~ 247 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN--KKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS 247 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE--EEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc--ceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence 44556889999 9984234555678999999986 222100 00001122233 5688999999998777777788
Q ss_pred cEEEEE
Q 035558 247 KLQILR 252 (253)
Q Consensus 247 ~i~vw~ 252 (253)
.|.+|+
T Consensus 248 ~i~~~d 253 (314)
T 1pjx_A 248 HIEVFG 253 (314)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 898886
No 211
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.43 E-value=2.5e-11 Score=103.19 Aligned_cols=199 Identities=15% Similarity=0.142 Sum_probs=129.3
Q ss_pred CCeeEEEecCCCCCEEEEE-----eCCCeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCc----------
Q 035558 43 GPLTSFDWNEAEPRRIGTS-----SIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGS---------- 107 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~-----~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~---------- 107 (253)
..+..++|| |++++|+-+ +....|++||+++++.+.... +......++|++++.|+.++.+..
T Consensus 129 ~~l~~~~~S-pDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~ 206 (693)
T 3iuj_A 129 TALDQLSFS-RDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWLGNEGFFYSSYDKPDGSELSARTD 206 (693)
T ss_dssp CEEEEEEEC-TTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEETTTEEEEEESSCCC-------CC
T ss_pred EEEEEEEEC-CCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEeCCCEEEEEEecCcccccccccCC
Confidence 568889999 899988743 333579999999988554311 111124567876777877777643
Q ss_pred ---EEEEEcCCCCCe-eeeeccCC-CCCCeeEEEeeCCCCCEEEEEEeCC---CeEEEEECCCCCCCeeeecccccceeE
Q 035558 108 ---VRVFDLRDKEHS-TIIYESSE-PDTPLVRLGWNKQDPRYMATIIMDS---AKVVVLDIRFPTLPVVELQRHQASVNA 179 (253)
Q Consensus 108 ---i~i~d~~~~~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~i~~ 179 (253)
|++|++.+.... ..+..... +......+.|+| ++++|+.....+ ..|+++|+.+.......+..+......
T Consensus 207 ~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~ 285 (693)
T 3iuj_A 207 QHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVS 285 (693)
T ss_dssp CCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEE
T ss_pred CcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEE
Confidence 999999876532 23444433 344578899999 888776655432 259999998765445666666665555
Q ss_pred EEEecCCCCeEEEecCC---CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCC---cEEEEE
Q 035558 180 IAWAPHSSCHICTAGDD---SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFST---KLQILR 252 (253)
Q Consensus 180 ~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~i~vw~ 252 (253)
. +++++.++++....+ +.|..+|+.++.... ...+..|...+. .|+++++.++....++ .|++|+
T Consensus 286 ~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~-----~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d 356 (693)
T 3iuj_A 286 L-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAH-----WRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFD 356 (693)
T ss_dssp E-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGG-----CEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEEC
T ss_pred E-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccc-----cEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEE
Confidence 5 667775555665554 678899988764311 123445555554 8899988777655544 466665
No 212
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.37 E-value=2.7e-10 Score=89.97 Aligned_cols=231 Identities=10% Similarity=0.030 Sum_probs=140.1
Q ss_pred CCceEEe-ecC--cEEEEEccCCccccceeeeecCCC---CccccCCeeEEEecCCCCCEEEEEeCC------CeEEEEe
Q 035558 4 KPDLLAT-SSD--FLRVWRISDEDRRVELKSLLNGNK---NSEYCGPLTSFDWNEAEPRRIGTSSID------TTCTIWD 71 (253)
Q Consensus 4 ~~~~l~~-~~~--~v~iw~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~vwd 71 (253)
++++|.. +.. .|.++|+.+....++..++++..+ .... ..-..+... +++ +++++..+ |.|.+.|
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~-s~Ph~~~~~-pdG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGY-SRLHTVHCG-PDA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCE-EEEEEEEEC-SSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCC-CcccceeEC-CCe-EEEEcCCCcCCCCCCeEEEEE
Confidence 4455555 443 999999975434456666663100 0000 133456677 777 77776665 7899999
Q ss_pred ccCceeeeeeeccc---ccEEEEEec-CCCeEEEEe-------------------CCCcEEEEEcCCCCCeeeeeccCCC
Q 035558 72 IEREAVDTQLIAHD---KEVYDIAWG-GVGVFASVS-------------------ADGSVRVFDLRDKEHSTIIYESSEP 128 (253)
Q Consensus 72 ~~~~~~~~~~~~~~---~~v~~~~~~-~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~~~~ 128 (253)
.++.+.+..+.... ..-.++-|+ +++.+++.. .+.+|.+||+.+.+....+.... .
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~-~ 249 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE-E 249 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT-T
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC-C
Confidence 99999888876222 223457778 888887774 37899999999875444333221 1
Q ss_pred CCCeeEEEe--eCCCCCEEEEEEe-----CCCeEEEEECCCCCC-Ceee--ecc----------------cccceeEEEE
Q 035558 129 DTPLVRLGW--NKQDPRYMATIIM-----DSAKVVVLDIRFPTL-PVVE--LQR----------------HQASVNAIAW 182 (253)
Q Consensus 129 ~~~i~~~~~--~~~~~~~l~~~~~-----~~~~i~~~d~~~~~~-~~~~--~~~----------------~~~~i~~~~~ 182 (253)
......+.| +| +++++.+++. ....|.+|....+.. ..+. +.. -......+.+
T Consensus 250 g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l 328 (462)
T 2ece_A 250 NRMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI 328 (462)
T ss_dssp EEEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred CCccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence 123445555 99 8888888776 554487665443210 0010 000 0234678999
Q ss_pred ecCCCCeEEEec-CCCcEEEEeccCCCCCCCCCCCCeeecc-------C------CCceeEEEEcCCCCceEEEE
Q 035558 183 APHSSCHICTAG-DDSQALIWDLSSMGQPVEGGLDPILAYT-------A------GAEIEQLQWSSSQPDWVAIA 243 (253)
Q Consensus 183 ~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------~------~~~v~~~~~~~~~~~~~~~~ 243 (253)
+||+ ++|+++. ..+.|.+||+.....+... -....+ | ......++++|+|++++++.
T Consensus 329 S~DG-rfLYVSnrg~d~VavfdV~d~~~~~lv---~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 329 SLDD-KFLYLSLWGIGEVRQYDISNPFKPVLT---GKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CTTS-CEEEEEETTTTEEEEEECSSTTSCEEE---EEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCC-CEEEEEeCCCCEEEEEEecCCCCcEEE---EEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9999 5665554 5799999999754322200 001111 0 11368899999999888776
No 213
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.37 E-value=2.6e-10 Score=88.76 Aligned_cols=228 Identities=9% Similarity=0.025 Sum_probs=140.4
Q ss_pred CCceEEeec---C-cEEEEEccCCccccceeeeecC--CCCccccCCeeEEEecCCCCCEEEEEeC-----CCeEEEEec
Q 035558 4 KPDLLATSS---D-FLRVWRISDEDRRVELKSLLNG--NKNSEYCGPLTSFDWNEAEPRRIGTSSI-----DTTCTIWDI 72 (253)
Q Consensus 4 ~~~~l~~~~---~-~v~iw~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~vwd~ 72 (253)
+++++++.. + .++||.++.+ +. ..+.. +....+-..+.++++. ++++++++-.. ++.|.+||+
T Consensus 27 ~g~~~v~~~~~~~~~~~l~~~~~g----~~-~~~p~~~~~~~~~~~~p~gv~~d-~~g~L~v~D~g~~~~~~~~i~~~d~ 100 (343)
T 2qe8_A 27 DGRLFLSLHQFYQPEMQVAELTQD----GL-IPFPPQSGNAIITFDTVLGIKSD-GNGIVWMLDNGNQSKSVPKLVAWDT 100 (343)
T ss_dssp TSCEEEEECGGGCCSCSEEEEETT----EE-EESCCCCSSCCCCCSCEEEEEEC-SSSEEEEEECHHHHTSCCEEEEEET
T ss_pred CCCEEEEeCCCCCCceEEEEECCC----Ce-ecCCCcccCcccceeEeeEEEEc-CCCcEEEEcCCCCcCCCCeEEEEEC
Confidence 567777753 1 3677777643 22 21111 1111112678999999 77776665433 578999999
Q ss_pred cCceeeeeeecc------cccEEEEEec-CCC-eEEEEe---CCCcEEEEEcCCCCCeeeeec--cC----------C--
Q 035558 73 EREAVDTQLIAH------DKEVYDIAWG-GVG-VFASVS---ADGSVRVFDLRDKEHSTIIYE--SS----------E-- 127 (253)
Q Consensus 73 ~~~~~~~~~~~~------~~~v~~~~~~-~~~-~l~~~~---~dg~i~i~d~~~~~~~~~~~~--~~----------~-- 127 (253)
.+++.+..+... ...+..+++. ++. .+++-. .++.|.+||+.+++....+.. .. +
T Consensus 101 ~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~ 180 (343)
T 2qe8_A 101 LNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVP 180 (343)
T ss_dssp TTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEE
T ss_pred CCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEE
Confidence 988866655421 2356889998 544 445554 678999999987653332211 00 0
Q ss_pred ------------CCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCC---CCCC----e--eeecccccceeEEEEecCC
Q 035558 128 ------------PDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF---PTLP----V--VELQRHQASVNAIAWAPHS 186 (253)
Q Consensus 128 ------------~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~---~~~~----~--~~~~~~~~~i~~~~~~~~~ 186 (253)
....+..++|+| +++.|+++...+..+..++... .... . ....++......++++++|
T Consensus 181 ~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G 259 (343)
T 2qe8_A 181 VQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDH 259 (343)
T ss_dssp CBEECTTSCEECCCCCEEEEEECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTC
T ss_pred EEeccCCCceeceecccceeEecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCC
Confidence 012367899999 8888888887775577776431 1100 0 0112334456789999998
Q ss_pred CCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcC
Q 035558 187 SCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFS 245 (253)
Q Consensus 187 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 245 (253)
+++++...++.|.+||..+++... .....+...+.++++.+++..+++.+..
T Consensus 260 -~l~va~~~~~~V~~~d~~~G~~~~------~~~~~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 260 -NIYVGDLAHSAIGVITSADRAYKL------LVTDEKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp -CEEEEEGGGTEEEEEETTTTEEEE------EEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred -CEEEEccCCCeEEEEECCCCCEEE------EEECCceecCCeeEECCCCcEEEEeCcc
Confidence 688888889999999984443111 1111234568999999998766665533
No 214
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.36 E-value=3.9e-10 Score=86.30 Aligned_cols=214 Identities=8% Similarity=-0.012 Sum_probs=130.3
Q ss_pred CCCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558 2 CQKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT 79 (253)
Q Consensus 2 p~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 79 (253)
|+...++.+... .|..|+... + ...+..+. ..+..++++ ++++++++...++.|.+|+.. ++...
T Consensus 54 ~~g~~l~~~d~~~~~i~~~~~~g-----~-~~~~~~~~-----~~~~gl~~d-~dG~l~v~~~~~~~v~~~~~~-g~~~~ 120 (305)
T 3dr2_A 54 EAQRTLVWSDLVGRRVLGWREDG-----T-VDVLLDAT-----AFTNGNAVD-AQQRLVHCEHGRRAITRSDAD-GQAHL 120 (305)
T ss_dssp GGGTEEEEEETTTTEEEEEETTS-----C-EEEEEESC-----SCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred CCCCEEEEEECCCCEEEEEeCCC-----C-EEEEeCCC-----CccceeeEC-CCCCEEEEECCCCEEEEECCC-CCEEE
Confidence 333336666553 888898743 2 23344444 568899999 788877665566789999986 54322
Q ss_pred eeecc----cccEEEEEec-CCCeEEE----EeC-------------CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEe
Q 035558 80 QLIAH----DKEVYDIAWG-GVGVFAS----VSA-------------DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGW 137 (253)
Q Consensus 80 ~~~~~----~~~v~~~~~~-~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~ 137 (253)
..... ...+.++++. +++++++ |.. .+.|..+|..+++..... . ......++|
T Consensus 121 ~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~----~~~p~gl~~ 195 (305)
T 3dr2_A 121 LVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D----LDHPNGLAF 195 (305)
T ss_dssp EECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E----ESSEEEEEE
T ss_pred EEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c----CCCCcceEE
Confidence 11111 1346789999 8888876 332 245777777666533322 1 125678999
Q ss_pred eCCCCCEEEEEEeCC-----CeEEEEECCCCCCC-eeee-cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCC
Q 035558 138 NKQDPRYMATIIMDS-----AKVVVLDIRFPTLP-VVEL-QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQP 210 (253)
Q Consensus 138 ~~~~~~~l~~~~~~~-----~~i~~~d~~~~~~~-~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 210 (253)
+| +++.|+++.... ..|.+||+...... ...+ .........++++++| + |.++..+ .|.+|+... +..
T Consensus 196 sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G-~-lwv~~~~-gv~~~~~~g-~~~ 270 (305)
T 3dr2_A 196 SP-DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGG-W-LWSSSGT-GVCVFDSDG-QLL 270 (305)
T ss_dssp CT-TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTS-C-EEECCSS-EEEEECTTS-CEE
T ss_pred cC-CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCC-C-EEEecCC-cEEEECCCC-CEE
Confidence 99 888777776651 34999998753200 0111 1123345678999998 4 5455545 499998743 211
Q ss_pred CCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCC
Q 035558 211 VEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFST 246 (253)
Q Consensus 211 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 246 (253)
........+.+++|+|+++.|..++.++
T Consensus 271 --------~~~~~~~~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 271 --------GHIPTPGTASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp --------EEEECSSCCCEEEECTTSCEEEEEETTE
T ss_pred --------EEEECCCceeEEEEeCCCCEEEEEcCCe
Confidence 1222223588999999887666666543
No 215
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.35 E-value=2.5e-10 Score=90.71 Aligned_cols=217 Identities=12% Similarity=0.039 Sum_probs=136.7
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe----------CCCeEEEEeccCceeeeeeec
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS----------IDTTCTIWDIEREAVDTQLIA 83 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~ 83 (253)
.|.++|..+. +.+..+..-. .+ .+.++ +++++++.+. .++.|.++|..+++.+..+.-
T Consensus 100 ~VsVID~~t~----~vv~~I~vG~-----~P--gia~S-pDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v 167 (426)
T 3c75_H 100 QQFVIDGSTG----RILGMTDGGF-----LP--HPVAA-EDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIEL 167 (426)
T ss_dssp EEEEEETTTT----EEEEEEEECS-----SC--EEEEC-TTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred eEEEEECCCC----EEEEEEECCC-----CC--ceEEC-CCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEEC
Confidence 7999999887 7777777554 45 89999 8888887775 467899999999998877652
Q ss_pred c-------cccEEEEEec-CCCeEEEEeC--CCcEEEEEcCCCCCeeeeeccCC----CCCCeeEEE-------------
Q 035558 84 H-------DKEVYDIAWG-GVGVFASVSA--DGSVRVFDLRDKEHSTIIYESSE----PDTPLVRLG------------- 136 (253)
Q Consensus 84 ~-------~~~v~~~~~~-~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~----~~~~i~~~~------------- 136 (253)
. ......+.++ ++++++.+.. ++.|.+.|+.+.+....+..... ..+.-..+.
T Consensus 168 ~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~ 247 (426)
T 3c75_H 168 PDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFA 247 (426)
T ss_dssp TTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECC
T ss_pred CCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECC
Confidence 1 1234578999 9998888764 57899999998875443322100 000000122
Q ss_pred ------------------------eeCCCCCEEEEEEeCCCeEEEEECCCCCCCe-eeec----------ccccceeEEE
Q 035558 137 ------------------------WNKQDPRYMATIIMDSAKVVVLDIRFPTLPV-VELQ----------RHQASVNAIA 181 (253)
Q Consensus 137 ------------------------~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~-~~~~----------~~~~~i~~~~ 181 (253)
+.+ ++..++.....+. +.+.|+......+ ..+. ........++
T Consensus 248 ~~~v~~~~~~~~~v~~~p~~~~~~~~~-dg~~~~~~s~~g~-V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va 325 (426)
T 3c75_H 248 DGETKVTNTEVFHTEDELLINHPAFSL-RSGRLVWPTYTGK-IFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTA 325 (426)
T ss_dssp TTCCEEEECCCCSCTTSCBCSCCEECT-TTCEEEEEBTTSE-EEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEE
T ss_pred CCcEEEEeeeeeccCCCceeeEeeecC-CCCEEEEEeCCCc-EEEEeccCCceEEeeeeeeccccccccccccCCceeeE
Confidence 233 3333333344443 6666664322100 0000 0011222378
Q ss_pred EecCCCCeEEEec----------CCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC-ceEEEE-cCCcEE
Q 035558 182 WAPHSSCHICTAG----------DDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP-DWVAIA-FSTKLQ 249 (253)
Q Consensus 182 ~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-~~~~i~ 249 (253)
++|++. .+++.. .++.|.++|+.+.+... ...-......++|+|+++ .+++.. .++.|.
T Consensus 326 ~s~dg~-rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~--------~I~vg~~P~gia~spDg~~~lyv~n~~s~~Vs 396 (426)
T 3c75_H 326 YHRQSD-RIYLLVDQRDEWKHKAASRFVVVLNAETGERIN--------KIELGHEIDSINVSQDAEPLLYALSAGTQTLH 396 (426)
T ss_dssp EEGGGT-EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE--------EEEEEEEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred EcCCCC-EEEEEecccccccccCCCCEEEEEECCCCeEEE--------EEECCCCcCeEEEccCCCEEEEEEcCCCCeEE
Confidence 999985 444432 13579999999987433 122233688999999998 777777 589999
Q ss_pred EEEC
Q 035558 250 ILRV 253 (253)
Q Consensus 250 vw~l 253 (253)
|+|+
T Consensus 397 VID~ 400 (426)
T 3c75_H 397 IYDA 400 (426)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9885
No 216
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.35 E-value=2e-09 Score=83.21 Aligned_cols=194 Identities=7% Similarity=-0.077 Sum_probs=124.2
Q ss_pred eeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeee
Q 035558 45 LTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIY 123 (253)
Q Consensus 45 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 123 (253)
..+..|+|..+.++++...++.|..||.++++.. .+. ....+.++++. +++++++. .+ .|.+||..+++... +.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~-~~ 125 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTL-HA 125 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEE-EE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEE-Ee
Confidence 4578899445667777778899999999877643 233 34678999999 87776654 44 49999998776322 22
Q ss_pred ccC--CCCCCeeEEEeeCCCCCEEEEEEeC------CCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecC
Q 035558 124 ESS--EPDTPLVRLGWNKQDPRYMATIIMD------SAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGD 195 (253)
Q Consensus 124 ~~~--~~~~~i~~~~~~~~~~~~l~~~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 195 (253)
... .....+..++++| +++++++...+ +. |..++ +.+ ...+..+....+.++|+|++..++++.+.
T Consensus 126 ~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~-l~~~~--~g~--~~~~~~~~~~~~~i~~s~dg~~lyv~~~~ 199 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGS-IYHVA--KGK--VTKLFADISIPNSICFSPDGTTGYFVDTK 199 (326)
T ss_dssp CSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEE-EEEEE--TTE--EEEEEEEESSEEEEEECTTSCEEEEEETT
T ss_pred eCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceE-EEEEe--CCc--EEEeeCCCcccCCeEEcCCCCEEEEEECC
Confidence 211 1123688999999 78766654432 23 66666 322 33333334457889999999433455567
Q ss_pred CCcEEEEecc--CC-CCCCCCCCCCe-eeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 196 DSQALIWDLS--SM-GQPVEGGLDPI-LAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 196 dg~i~iwd~~--~~-~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
++.|.+|++. ++ .... .... ........+..+++.+++..+++...++.|.+|+
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~---~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d 257 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGK---AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD 257 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSC---CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred CCEEEEEEcccccCCcccC---ceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEEC
Confidence 8899999986 33 2110 0001 1112345678899999998666666667788775
No 217
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.32 E-value=4.7e-10 Score=95.40 Aligned_cols=222 Identities=13% Similarity=0.076 Sum_probs=131.8
Q ss_pred CCCceEE-----eecC--cEEEEEccCCccccceeee-ecCCCCccccCCeeEEEecCCCCCEEEEEeCCC---------
Q 035558 3 QKPDLLA-----TSSD--FLRVWRISDEDRRVELKSL-LNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT--------- 65 (253)
Q Consensus 3 ~~~~~l~-----~~~~--~v~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--------- 65 (253)
+++++|| .|++ .|++||+.++ +.+.. +.. .....++|+ +++.|+.++.+.
T Consensus 138 pDg~~lAy~~~~~G~~~~~i~v~dl~tg----~~~~~~~~~-------~k~~~~~Ws--Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 138 RDGRILAYSLSLAGSDWREIHLMDVESK----QPLETPLKD-------VKFSGISWL--GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp TTSSEEEEEEECSSCCEEEEEEEETTTC----SEEEEEEEE-------EESCCCEEE--TTTEEEEEESSCCC-------
T ss_pred CCCCEEEEEEecCCCceEEEEEEECCCC----CCCccccCC-------ceeccEEEe--CCCEEEEEEecCccccccccc
Confidence 3566666 3444 8999999986 33221 111 113467898 677777777663
Q ss_pred ----eEEEEeccCce----eeeeeec-ccccEEEEEec-CCCeEEEEeC----CCcEEEEEcCCCC-CeeeeeccCCCCC
Q 035558 66 ----TCTIWDIEREA----VDTQLIA-HDKEVYDIAWG-GVGVFASVSA----DGSVRVFDLRDKE-HSTIIYESSEPDT 130 (253)
Q Consensus 66 ----~i~vwd~~~~~----~~~~~~~-~~~~v~~~~~~-~~~~l~~~~~----dg~i~i~d~~~~~-~~~~~~~~~~~~~ 130 (253)
.|++|++.+.. .+..... |......+.|+ ++++|+.... ...|+++|+.++. ....+... ..
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~---~~ 281 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD---LD 281 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS---SS
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC---CC
Confidence 49999987654 2322233 44457889999 8887755432 3589999998764 22333222 22
Q ss_pred CeeEEEeeCCCCCEEEEEE-eCC--CeEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEEec-CCC--cEEEEe
Q 035558 131 PLVRLGWNKQDPRYMATII-MDS--AKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICTAG-DDS--QALIWD 203 (253)
Q Consensus 131 ~i~~~~~~~~~~~~l~~~~-~~~--~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg--~i~iwd 203 (253)
..... +++ ++..|+..+ .++ ..|..+|+.+... ....+..|...+. .|++++. .|+... .++ .|++|+
T Consensus 282 ~~~~~-~~~-~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~-~lv~~~~~~g~~~l~~~d 356 (693)
T 3iuj_A 282 ADVSL-VDN-KGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSG-YLFAEYMVDATARVEQFD 356 (693)
T ss_dssp SCEEE-EEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETT-EEEEEEEETTEEEEEEEC
T ss_pred ceEEE-Eec-cCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECC-EEEEEEEECCeeEEEEEE
Confidence 33333 556 444444444 332 3499999987542 1345555665554 8899985 555444 454 688888
Q ss_pred ccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcC----CcEEEEE
Q 035558 204 LSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFS----TKLQILR 252 (253)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~i~vw~ 252 (253)
+...... .........+..+.++++++.++....+ +.+..|+
T Consensus 357 ~~g~~~~-------~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 357 YEGKRVR-------EVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp TTSCEEE-------EECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred CCCCeeE-------EeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 8743211 1222345567788888888766644433 5566554
No 218
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.32 E-value=2.4e-09 Score=83.77 Aligned_cols=221 Identities=12% Similarity=0.055 Sum_probs=137.4
Q ss_pred cEEEEEccCCccccceeeeecCCC--CccccCCeeEEEecCCCCCEEEEEeC--CCeEEEEeccCceeeeeeecccccEE
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNK--NSEYCGPLTSFDWNEAEPRRIGTSSI--DTTCTIWDIEREAVDTQLIAHDKEVY 89 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~ 89 (253)
.|.+||..+. +....+.... ..........+.|+ +++++++.+.. ++.|.++|+.+++.+.++.... .
T Consensus 110 ~VsviD~~t~----~v~~~I~v~~g~r~~~g~~P~~~a~s-pDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-~-- 181 (386)
T 3sjl_D 110 YVEVFDPVTL----LPTADIELPDAPRFLVGTYPWMTSLT-PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-C-- 181 (386)
T ss_dssp EEEEECTTTC----CEEEEEEETTCCCCCBSCCGGGEEEC-TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-E--
T ss_pred EEEEEECCCC----eEEEEEECCCccccccCCCCceEEEc-CCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-c--
Confidence 8999999986 6666553211 00000235578999 89998888764 6899999999999888875321 1
Q ss_pred EEEec-CCCeEEEEeCCCcEEEEEcCC-CCCeeeeeccC-CCCCCe-eEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC
Q 035558 90 DIAWG-GVGVFASVSADGSVRVFDLRD-KEHSTIIYESS-EPDTPL-VRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL 165 (253)
Q Consensus 90 ~~~~~-~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~-~~~~~i-~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~ 165 (253)
...+. ..+.+++.+.||.+.+.++.. ++......... ....++ ....|.+.+++++. .+.++. |++.|+.....
T Consensus 182 ~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~-V~v~d~~~~~~ 259 (386)
T 3sjl_D 182 YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGK-IHQIDLSSGDA 259 (386)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSE-EEEEECTTSSC
T ss_pred ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCE-EEEEECCCCcc
Confidence 23344 666777888999999999986 44311111110 011122 22466543665544 455666 99999976431
Q ss_pred -Ceeeec----------ccccceeEEEEecCCCCeEEEecC----------CCcEEEEeccCCCCCCCCCCCCeeeccCC
Q 035558 166 -PVVELQ----------RHQASVNAIAWAPHSSCHICTAGD----------DSQALIWDLSSMGQPVEGGLDPILAYTAG 224 (253)
Q Consensus 166 -~~~~~~----------~~~~~i~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 224 (253)
....+. ........++++|++. .++.... .+.|.++|+.+.+... ...-.
T Consensus 260 ~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~-~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~--------~i~vg 330 (386)
T 3sjl_D 260 KFLPAVEALTEAERADGWRPGGWQQVAYHRALD-RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA--------KFEMG 330 (386)
T ss_dssp EECCCEESSCHHHHHTTEEECSSSCEEEETTTT-EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE--------EEEEE
T ss_pred eeecceeccccccccccccCCCcceeeECCCCC-eEEEEeccccccccCCCCCEEEEEECCCCeEEE--------EEECC
Confidence 111111 0123344578899985 5555431 2579999999977432 22223
Q ss_pred CceeEEEEcCCCC-ceEEE-EcCCcEEEEEC
Q 035558 225 AEIEQLQWSSSQP-DWVAI-AFSTKLQILRV 253 (253)
Q Consensus 225 ~~v~~~~~~~~~~-~~~~~-~~~~~i~vw~l 253 (253)
.++.+|+++++++ .|+++ ..++.|.+++.
T Consensus 331 ~~~~~lavs~D~~~~ly~tn~~~~~VsViD~ 361 (386)
T 3sjl_D 331 HEIDSINVSQDEKPLLYALSTGDKTLYIHDA 361 (386)
T ss_dssp EEECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred CCcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 4788999999996 56654 45888998874
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.25 E-value=9.2e-10 Score=84.23 Aligned_cols=193 Identities=9% Similarity=0.014 Sum_probs=122.4
Q ss_pred CCeeEEEecCCCCC-EEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCee
Q 035558 43 GPLTSFDWNEAEPR-RIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHST 120 (253)
Q Consensus 43 ~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~ 120 (253)
.......|+ ++++ ++++...++.|..|+.. ++ ...+..+...+..+++. +++++++...++.|..|+.. ++. .
T Consensus 45 ~~~egp~~~-~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~-~ 119 (305)
T 3dr2_A 45 TWSEGPAWW-EAQRTLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA-H 119 (305)
T ss_dssp SSEEEEEEE-GGGTEEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-E
T ss_pred cCccCCeEe-CCCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCE-E
Confidence 356688999 6776 67788888999999984 44 34455566778999999 88877666666889999986 432 2
Q ss_pred eeecc-C-CCCCCeeEEEeeCCCCCEEEE----EEe-------------CCCeEEEEECCCCCCCeeeecccccceeEEE
Q 035558 121 IIYES-S-EPDTPLVRLGWNKQDPRYMAT----IIM-------------DSAKVVVLDIRFPTLPVVELQRHQASVNAIA 181 (253)
Q Consensus 121 ~~~~~-~-~~~~~i~~~~~~~~~~~~l~~----~~~-------------~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~ 181 (253)
.+... . .....+..++++| +++++++ +.. .+. |..+|..+++. ..+. .....+.++
T Consensus 120 ~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~-v~~~d~~~g~~--~~~~-~~~~p~gl~ 194 (305)
T 3dr2_A 120 LLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHS-VYRLPPDGSPL--QRMA-DLDHPNGLA 194 (305)
T ss_dssp EEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEE-EEEECSSSCCC--EEEE-EESSEEEEE
T ss_pred EEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCe-EEEEcCCCCcE--EEEe-cCCCCcceE
Confidence 22211 1 1112567899999 8887775 221 133 88888765442 2222 345678899
Q ss_pred EecCCCCeEEEecCC------CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 182 WAPHSSCHICTAGDD------SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 182 ~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
|+|++ +.|+.+... +.|.+|++.... .. ............+..+++.++|..++ ++ .+.|.+|+
T Consensus 195 ~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~---~~~~~~~~~~~~pdgi~~d~~G~lwv-~~-~~gv~~~~ 264 (305)
T 3dr2_A 195 FSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGA-LH---DRRHFASVPDGLPDGFCVDRGGWLWS-SS-GTGVCVFD 264 (305)
T ss_dssp ECTTS-SEEEEEECCC---CCCEEEEEEEETTE-EE---EEEEEECCSSSCCCSEEECTTSCEEE-CC-SSEEEEEC
T ss_pred EcCCC-CEEEEEecCCcCCCCCEEEEEEecCCC-cc---CCeEEEECCCCCCCeEEECCCCCEEE-ec-CCcEEEEC
Confidence 99999 566666554 789999987543 10 00001111234456788999987443 33 34577664
No 220
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.23 E-value=2.4e-09 Score=83.28 Aligned_cols=205 Identities=10% Similarity=0.049 Sum_probs=123.2
Q ss_pred CeeEEEecCCCCCEEEEEe--CCCeEEEEeccCceeeeee-------ecccccEEEEEec-CCCeEEEEeC-----CCcE
Q 035558 44 PLTSFDWNEAEPRRIGTSS--IDTTCTIWDIEREAVDTQL-------IAHDKEVYDIAWG-GVGVFASVSA-----DGSV 108 (253)
Q Consensus 44 ~v~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~~-~~~~l~~~~~-----dg~i 108 (253)
.+..++++ ++++++++.. .++.++||.+.+++.. .+ ..+-..+..+++. +++++++-.. ++.|
T Consensus 18 ~p~~va~~-~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 18 APGNITLT-PDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp CEEEEEEC-TTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CcceEEEC-CCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 57899999 7888888864 2343555555455432 22 1344678999999 7776665443 5789
Q ss_pred EEEEcCCCCCeeeeecc---CCCCCCeeEEEeeCCCCCEEEEEE---eCCCeEEEEECCCCCCCeeeeccc---------
Q 035558 109 RVFDLRDKEHSTIIYES---SEPDTPLVRLGWNKQDPRYMATII---MDSAKVVVLDIRFPTLPVVELQRH--------- 173 (253)
Q Consensus 109 ~i~d~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~---~~~~~i~~~d~~~~~~~~~~~~~~--------- 173 (253)
.+||+.+++....+... ..+...+..++++|.++..+++-. .++. |.+||+.+.+. ...+..|
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~-i~v~d~~~g~~-~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA-LIRVDLQTGLA-ARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCE-EEEEETTTCCE-EEECTTCTTTSCCSCC
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCe-EEEEECCCCCE-EEEecCCCcccccccc
Confidence 99999987644333221 122235689999983344444433 3555 99999876442 2222111
Q ss_pred --------------------ccceeEEEEecCCCCeEEEecCCC-cEEEEeccCCCCCCCCC---CCCeeeccCCCceeE
Q 035558 174 --------------------QASVNAIAWAPHSSCHICTAGDDS-QALIWDLSSMGQPVEGG---LDPILAYTAGAEIEQ 229 (253)
Q Consensus 174 --------------------~~~i~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~v~~ 229 (253)
...++.++|+|++ +.|+.+..++ .+..++........... .......++......
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdg 252 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDG 252 (343)
T ss_dssp CEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSC
T ss_pred eeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCce
Confidence 1236889999999 5777776555 55444432111000000 000112233446678
Q ss_pred EEEcCCCCceEEEEcCCcEEEEEC
Q 035558 230 LQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
++++++|..+++...++.|.+|+.
T Consensus 253 ia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 253 ISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp EEECTTCCEEEEEGGGTEEEEEET
T ss_pred EEECCCCCEEEEccCCCeEEEEEC
Confidence 999999987778778888999873
No 221
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.23 E-value=5.7e-12 Score=99.12 Aligned_cols=181 Identities=14% Similarity=0.010 Sum_probs=96.1
Q ss_pred CceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558 5 PDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI 82 (253)
Q Consensus 5 ~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 82 (253)
+.++++++ + .|+.||..++ +.+..++. . .+.+..+. .++..+++++.||.|+.||.++++.+..+.
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG----~~~W~~~~-~------~~~s~p~~-~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~ 76 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTG----SIKWTLKE-D------PVLQVPTH-VEEPAFLPDPNDGSLYTLGSKNNEGLTKLP 76 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTC----CEEEEEEC-C------CSCCCC------CCEEECTTTCCEEEC-----CCSEECS
T ss_pred CCEEEEEcCCCEEEEEECCCC----CEEEEecC-C------CceecceE-cCCCEEEEeCCCCEEEEEECCCCceeeeee
Confidence 34444544 5 9999999988 66666554 2 23333333 456678888899999999999888766554
Q ss_pred cccc-cEE-EEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558 83 AHDK-EVY-DIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160 (253)
Q Consensus 83 ~~~~-~v~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~ 160 (253)
.+.. .+. ...+..+..+++++.|+.++.||.++++..... ..+. ...++| ++..+++++.++. |+.||.
T Consensus 77 ~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~---~~~~----~~~~~p-~~~~v~~~~~dg~-v~a~d~ 147 (369)
T 2hz6_A 77 FTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTL---SSAF----ADSLSP-STSLLYLGRTEYT-ITMYDT 147 (369)
T ss_dssp CCHHHHHTTCSCC-----CCCCEEEEEEEEECCC------------------------------EEEEEEEEE-EECCCS
T ss_pred ccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEe---cCCC----cccccc-cCCEEEEEecCCE-EEEEEC
Confidence 3321 111 111113456778888999999999988743222 1111 234567 7788888888888 999999
Q ss_pred CCCCCCeeeecccccceeEEEEecCC--CCeEEEecCCCcEEEEeccCCCC
Q 035558 161 RFPTLPVVELQRHQASVNAIAWAPHS--SCHICTAGDDSQALIWDLSSMGQ 209 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~ 209 (253)
++++. +..+..+. .....+.++. ...+++++.||.|+.||.++++.
T Consensus 148 ~tG~~-~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 148 KTREL-RWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp SSSSC-CCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred CCCCE-EEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 98764 44433211 2223344421 02577788899999999998763
No 222
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.20 E-value=5.4e-12 Score=99.25 Aligned_cols=177 Identities=10% Similarity=-0.026 Sum_probs=94.4
Q ss_pred CCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCe
Q 035558 54 EPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPL 132 (253)
Q Consensus 54 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i 132 (253)
.+..+++++.||.|+.||.++++.+..+.. +.+.+..+. ++..+++++.||.|+.||.++++....... .. ...+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~-~~-~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPF-TI-PELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSC-CH-HHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeec-cC-cccc
Confidence 467899999999999999999998887775 455554455 677888888999999999988764322111 00 0001
Q ss_pred e-EEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC
Q 035558 133 V-RLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV 211 (253)
Q Consensus 133 ~-~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 211 (253)
. +..+. .+..+++++.++. ++.||.++++. +..+..+. ...++|++ ..+++++.|+.|+.||.++++..-
T Consensus 84 ~~sp~~~--~~~~v~~g~~dg~-v~a~D~~tG~~-~w~~~~~~----~~~~~p~~-~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 84 QASPCRS--SDGILYMGKKQDI-WYVIDLLTGEK-QQTLSSAF----ADSLSPST-SLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp TTCSCC-------CCCCEEEEE-EEEECCC----------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred ccCceEe--cCCEEEEEeCCCE-EEEEECCCCcE-EEEecCCC----cccccccC-CEEEEEecCCEEEEEECCCCCEEE
Confidence 0 00111 3446677777887 99999998764 45554432 23456776 588899999999999999877432
Q ss_pred CCCCCCeeeccCCCceeEEEEcCCC---CceEEEEcCCcEEEEE
Q 035558 212 EGGLDPILAYTAGAEIEQLQWSSSQ---PDWVAIAFSTKLQILR 252 (253)
Q Consensus 212 ~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~i~vw~ 252 (253)
....+ .....++.++. ..+++++.++.+..|+
T Consensus 155 -------~~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d 189 (369)
T 2hz6_A 155 -------NATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVTVD 189 (369)
T ss_dssp -------EEEEE--EECCBCCCCCTTCCCCEEEEETSCEEEEEC
T ss_pred -------eEecc--cccCccccCCccccceEEEECCCCEEEEEE
Confidence 11100 11222333321 3467777788887776
No 223
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.20 E-value=1.4e-07 Score=70.65 Aligned_cols=225 Identities=8% Similarity=-0.024 Sum_probs=129.8
Q ss_pred eEEeecC-cEEEEEccCCccc-cceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecc
Q 035558 7 LLATSSD-FLRVWRISDEDRR-VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAH 84 (253)
Q Consensus 7 ~l~~~~~-~v~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 84 (253)
+|..+.. .|+.++++..... ......+.... ..+..++|+|.++.++++-..++.|..+++........+...
T Consensus 3 ~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~-----~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~ 77 (267)
T 1npe_A 3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHIPA-----KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD 77 (267)
T ss_dssp EEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEE-----EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT
T ss_pred EEEEEcCCeEEEEEecCcccccccceeeecCCC-----CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC
Confidence 4444444 8888998764110 00011121111 346789999434555556566789999999765433333222
Q ss_pred cccEEEEEec-CCC-eEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC--CCeEEEEEC
Q 035558 85 DKEVYDIAWG-GVG-VFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMD--SAKVVVLDI 160 (253)
Q Consensus 85 ~~~v~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~--~~~i~~~d~ 160 (253)
......+++. ++. ++++-...+.|.++++...... .+... .......++++| ++..|..+... ...|..+++
T Consensus 78 ~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-~~~~~--~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~ 153 (267)
T 1npe_A 78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-VLFDT--GLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHM 153 (267)
T ss_dssp CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECS--SCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEET
T ss_pred CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE-EEEEC--CCCCccEEEEee-CCCEEEEEECCCCCcEEEEEec
Confidence 2467889998 544 5555556789999998765422 22211 113678999999 55555555443 234888887
Q ss_pred CCCCCCeeee-cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558 161 RFPTLPVVEL-QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW 239 (253)
Q Consensus 161 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 239 (253)
.... ...+ .........++++|++.+++++-...+.|.++|+...... ...........++.. .+ .+
T Consensus 154 dg~~--~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~--------~~~~~~~~P~gi~~d-~~-~l 221 (267)
T 1npe_A 154 DGTN--RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR--------KVLEGLQYPFAVTSY-GK-NL 221 (267)
T ss_dssp TSCC--CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE--------EEEECCCSEEEEEEE-TT-EE
T ss_pred CCCC--cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE--------EEecCCCCceEEEEe-CC-EE
Confidence 6432 2222 1223457899999987545566667789999998753311 111122334566654 33 44
Q ss_pred E-EEEcCCcEEEEE
Q 035558 240 V-AIAFSTKLQILR 252 (253)
Q Consensus 240 ~-~~~~~~~i~vw~ 252 (253)
+ +...++.|.+++
T Consensus 222 yva~~~~~~v~~~d 235 (267)
T 1npe_A 222 YYTDWKTNSVIAMD 235 (267)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEEECCCCeEEEEe
Confidence 4 444456776665
No 224
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.17 E-value=1.7e-09 Score=84.47 Aligned_cols=213 Identities=10% Similarity=-0.064 Sum_probs=130.6
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe----------CCCeEEEEeccCceeeeeeec
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS----------IDTTCTIWDIEREAVDTQLIA 83 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~ 83 (253)
.|.+.|..+. +.+.++.... .+ .+.++ +++++++.+. .++.|.+||..+++.+..+..
T Consensus 47 ~vsvID~~t~----~v~~~i~vG~-----~P--~i~~s-pDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v 114 (368)
T 1mda_H 47 ENWVSCAGCG----VTLGHSLGAF-----LS--LAVAG-HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL 114 (368)
T ss_dssp EEEEEETTTT----EEEEEEEECT-----TC--EEEEC-TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE
T ss_pred eEEEEECCCC----eEEEEEeCCC-----CC--ceEEC-CCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEEC
Confidence 5778999887 7777777655 55 79999 8888888775 368999999999999888864
Q ss_pred c-------cccEEEEEec-CCCeEEEEeC--CCcEEE--EEcCCCCCeeeeeccC---------------CCCCCeeEEE
Q 035558 84 H-------DKEVYDIAWG-GVGVFASVSA--DGSVRV--FDLRDKEHSTIIYESS---------------EPDTPLVRLG 136 (253)
Q Consensus 84 ~-------~~~v~~~~~~-~~~~l~~~~~--dg~i~i--~d~~~~~~~~~~~~~~---------------~~~~~i~~~~ 136 (253)
. ......++++ ++++++++.. +..+.+ +|..+ ...+.... ...+.+..+.
T Consensus 115 ~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd 191 (368)
T 1mda_H 115 PDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASD 191 (368)
T ss_dssp TTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEE
T ss_pred CCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEE
Confidence 3 1235678999 9999888864 467888 88866 11111000 0000111111
Q ss_pred e--------------------------eCCCCCEEEEEEeCCCeEEEEECCCCCCC-eeeec-------cc---ccceeE
Q 035558 137 W--------------------------NKQDPRYMATIIMDSAKVVVLDIRFPTLP-VVELQ-------RH---QASVNA 179 (253)
Q Consensus 137 ~--------------------------~~~~~~~l~~~~~~~~~i~~~d~~~~~~~-~~~~~-------~~---~~~i~~ 179 (253)
. .+ ++..++..+. +. +.+.|+...... +..+. .+ ......
T Consensus 192 ~~~~~~~~~~v~~~~t~~i~vg~~P~~~~-~~~~~~~vs~-~~-V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~ 268 (368)
T 1mda_H 192 LAAAPAAAGIVGAQCTGAQNCSSQAAQAN-YPGMLVWAVA-SS-ILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQM 268 (368)
T ss_dssp CCSSCCCCEECCCCSCTTSCBCSCCEEET-TTTEEEECBS-SC-CEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSC
T ss_pred CccccccCCeEEEEeeeeeeCCCCccccc-cCCEEEEEcC-CE-EEEEECCCCcceEEEEEEeccccccccccccCccee
Confidence 0 22 2233333333 55 777777543211 11111 00 111222
Q ss_pred EEEecCCCCeEEEe-c---C-----CCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce-EEEE-cCCcE
Q 035558 180 IAWAPHSSCHICTA-G---D-----DSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW-VAIA-FSTKL 248 (253)
Q Consensus 180 ~~~~~~~~~~l~~~-~---~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~-~~~~i 248 (253)
++++|++. .++.+ . . ++.+.++|+.+.+... ...-......++|+|+++.+ ++.. .++.|
T Consensus 269 v~~s~dg~-~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~--------~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~V 339 (368)
T 1mda_H 269 VAKLKNTD-GIMILTVEHSRSCLAAAENTSSVTASVGQTSG--------PISNGHDSDAIIAAQDGASDNYANSAGTEVL 339 (368)
T ss_dssp EEEETTTT-EEEEEEEECSSCTTSCEEEEEEEESSSCCEEE--------CCEEEEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred eEEcCCCC-EEEEEeccccCcccccCCCEEEEECCCCeEEE--------EEECCCCcceEEECCCCCEEEEEccCCCCeE
Confidence 78999985 55543 3 2 2356699999976432 11122368899999999854 4666 58999
Q ss_pred EEEEC
Q 035558 249 QILRV 253 (253)
Q Consensus 249 ~vw~l 253 (253)
.++|+
T Consensus 340 sVID~ 344 (368)
T 1mda_H 340 DIYDA 344 (368)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99985
No 225
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.15 E-value=1.6e-08 Score=79.10 Aligned_cols=190 Identities=14% Similarity=0.038 Sum_probs=121.9
Q ss_pred CCCCEEEEEeC-----CCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEe----------CCCcEEEEEcCCC
Q 035558 53 AEPRRIGTSSI-----DTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVS----------ADGSVRVFDLRDK 116 (253)
Q Consensus 53 ~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~----------~dg~i~i~d~~~~ 116 (253)
|+++.++.... ++.|.+.|..+++.+..+..-..+ . ++++ ++++++++. .++.|.+||..+.
T Consensus 42 pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~ 119 (386)
T 3sjl_D 42 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL 119 (386)
T ss_dssp CCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence 78888887765 679999999999999888755555 4 9999 999887765 3678999999998
Q ss_pred CCeeeeeccCCC----CCCeeEEEeeCCCCCEEEEEEeC-CCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEE
Q 035558 117 EHSTIIYESSEP----DTPLVRLGWNKQDPRYMATIIMD-SAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHIC 191 (253)
Q Consensus 117 ~~~~~~~~~~~~----~~~i~~~~~~~~~~~~l~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 191 (253)
+....+....+. ......++|+| ++++++++... ...|.++|+.+.+. +.++.... . ....|.+.+.++
T Consensus 120 ~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~~v-v~tI~v~g--~--~~~~P~g~~~~~ 193 (386)
T 3sjl_D 120 LPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAF-KRMLDVPD--C--YHIFPTAPDTFF 193 (386)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEE-EEEEECCS--E--EEEEEEETTEEE
T ss_pred eEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCCcE-EEEEECCC--c--ceeecCCCceeE
Confidence 866555432211 12466799999 89988888753 33499999998663 55553211 1 222355545677
Q ss_pred EecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCce-eEEEEc-CCCCceEEEEcCCcEEEEEC
Q 035558 192 TAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEI-EQLQWS-SSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 192 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~-~~~~~~~~~~~~~~i~vw~l 253 (253)
+.+.||++.+.++........... ..+.....++ ...+|. ++|+ ++-.+.++.+.+.++
T Consensus 194 ~~~~DG~~~~v~~~~~g~v~~~~~--~~~~~~~~~~~~~~~~~~~dG~-~~~vs~~g~V~v~d~ 254 (386)
T 3sjl_D 194 MHCRDGSLAKVAFGTEGTPEITHT--EVFHPEDEFLINHPAYSQKAGR-LVWPTYTGKIHQIDL 254 (386)
T ss_dssp EEETTSCEEEEECCSSSCCEEEEC--CCCSCTTSCBCSCCEEETTTTE-EEEEBTTSEEEEEEC
T ss_pred EECCCCCEEEEECCCCCeEEEeec--ceeccccccccccceeEcCCCc-EEEEeCCCEEEEEEC
Confidence 778888888888876322210000 0000111222 123554 5664 444666777777653
No 226
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.15 E-value=3.4e-08 Score=77.65 Aligned_cols=146 Identities=12% Similarity=-0.062 Sum_probs=102.6
Q ss_pred CCCCEEEEEeC--CC---eEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEe----------CCCcEEEEEcCCC
Q 035558 53 AEPRRIGTSSI--DT---TCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVS----------ADGSVRVFDLRDK 116 (253)
Q Consensus 53 ~~~~~l~~~~~--dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~----------~dg~i~i~d~~~~ 116 (253)
++++++++... .. .|.++|..+++.+..+.....+ .++++ +++.++.+. .++.|.+||..+.
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~ 107 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF 107 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence 67777776653 22 8899999999988777644444 89999 999888875 3678999999887
Q ss_pred CCeeeeecc-CCC---CCCeeEEEeeCCCCCEEEEEEeC-CCeEEEEECCCCCCCeee-ecccccceeEEEEecCCCCeE
Q 035558 117 EHSTIIYES-SEP---DTPLVRLGWNKQDPRYMATIIMD-SAKVVVLDIRFPTLPVVE-LQRHQASVNAIAWAPHSSCHI 190 (253)
Q Consensus 117 ~~~~~~~~~-~~~---~~~i~~~~~~~~~~~~l~~~~~~-~~~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l 190 (253)
+....+... ... ......++|+| ++++++++... ...|.++| .+.+. +.. +.. .. ++.+.|++++.+
T Consensus 108 ~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~-~~~~i~~-~~---~~~~~~~~~~~~ 180 (373)
T 2mad_H 108 LPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSS-DDQLLSS-PT---CYHIHPGAPSTF 180 (373)
T ss_pred cEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCE-EeEEcCC-Cc---eEEEEeCCCceE
Confidence 754444322 000 12345799999 99999988753 33499999 77553 444 432 11 255667776677
Q ss_pred EEecCCCcEEEEeccCCC
Q 035558 191 CTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 191 ~~~~~dg~i~iwd~~~~~ 208 (253)
++.+.||.+.++|. +++
T Consensus 181 ~~~~~dg~~~~vd~-~g~ 197 (373)
T 2mad_H 181 YLLCAQGGLAKTDH-AGG 197 (373)
T ss_pred EEEcCCCCEEEEEC-CCc
Confidence 78889999999999 654
No 227
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.14 E-value=7.5e-08 Score=71.50 Aligned_cols=192 Identities=9% Similarity=0.001 Sum_probs=123.7
Q ss_pred eeEEEecCCCCCEEEEEeC--CCeEEEEeccCceeeeeeeccc-ccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeee
Q 035558 45 LTSFDWNEAEPRRIGTSSI--DTTCTIWDIEREAVDTQLIAHD-KEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTI 121 (253)
Q Consensus 45 v~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 121 (253)
...+.|+ +++.++++.+. ++.|+++|+.+++.+..+.-.. .....+++..+.+.++.-.++.+.++|..+.+....
T Consensus 23 ~~Gl~~~-~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~ 101 (266)
T 2iwa_A 23 TQGLVYA-ENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKN 101 (266)
T ss_dssp EEEEEEC-STTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred cccEEEe-CCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEE
Confidence 5789999 66655555443 5799999999999888765211 122345554445556666789999999998875555
Q ss_pred eeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccc--c---cceeEEEEecCCCCeEEEecCC
Q 035558 122 IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRH--Q---ASVNAIAWAPHSSCHICTAGDD 196 (253)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~---~~i~~~~~~~~~~~~l~~~~~d 196 (253)
+... ... - ..+++ ++..++++..++. |.++|..+.+. +..+.-. . ..++.+.|. ++ .+.+....+
T Consensus 102 i~~g-~~~--g--~glt~-Dg~~l~vs~gs~~-l~viD~~t~~v-~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~ 171 (266)
T 2iwa_A 102 FTHQ-MKD--G--WGLAT-DGKILYGSDGTSI-LYEIDPHTFKL-IKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQT 171 (266)
T ss_dssp EECC-SSS--C--CEEEE-CSSSEEEECSSSE-EEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TT-EEEEEETTS
T ss_pred EECC-CCC--e--EEEEE-CCCEEEEECCCCe-EEEEECCCCcE-EEEEEECCCCcccccceeEEEE-CC-EEEEecCCC
Confidence 4322 122 1 23455 5666666665555 99999988663 4444321 1 136788888 66 466666678
Q ss_pred CcEEEEeccCCCCCCCCCCCCeeecc-----------CCCceeEEEEcCCCCceE-EEEcCCcEEEEE
Q 035558 197 SQALIWDLSSMGQPVEGGLDPILAYT-----------AGAEIEQLQWSSSQPDWV-AIAFSTKLQILR 252 (253)
Q Consensus 197 g~i~iwd~~~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~-~~~~~~~i~vw~ 252 (253)
+.|.+.|..+++... .....+ .....+.|+|+|+++.++ ++...+.+.+.+
T Consensus 172 ~~V~vID~~tg~V~~-----~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~ 234 (266)
T 2iwa_A 172 DCIARISAKDGTLLG-----WILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK 234 (266)
T ss_dssp SEEEEEETTTCCEEE-----EEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred CeEEEEECCCCcEEE-----EEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence 999999999987433 011111 124568999999987666 555667776655
No 228
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.12 E-value=2.5e-07 Score=69.20 Aligned_cols=212 Identities=9% Similarity=-0.017 Sum_probs=124.0
Q ss_pred CCCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558 2 CQKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT 79 (253)
Q Consensus 2 p~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 79 (253)
|.++.++++... .|..++++.. .....+.... .....++++|..+.++++-...+.|.++++.......
T Consensus 45 ~~~~~ly~~d~~~~~I~~~~~~g~----~~~~~~~~~~-----~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 45 CVDKVVYWTDISEPSIGRASLHGG----EPTTIIRQDL-----GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp TTTTEEEEEETTTTEEEEEESSSC----CCEEEECTTC-----CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred cCCCEEEEEECCCCEEEEEecCCC----CcEEEEECCC-----CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 445556666543 8888888764 2222222221 3567899983345555555667899999987433222
Q ss_pred eeecccccEEEEEec-CCCeEEEEeC---CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558 80 QLIAHDKEVYDIAWG-GVGVFASVSA---DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV 155 (253)
Q Consensus 80 ~~~~~~~~v~~~~~~-~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i 155 (253)
...........++++ ++..|..+.. .+.|..+++..... ..+.. ........++++| ++..|+.+......|
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~~~~~--~~~~~P~gia~d~-~~~~lyv~d~~~~~I 191 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQ--DNLGLPNGLTFDA-FSSQLCWVDAGTHRA 191 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEEC--TTCSCEEEEEEET-TTTEEEEEETTTTEE
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-EEEEE--CCCCCCcEEEEcC-CCCEEEEEECCCCEE
Confidence 222222456889998 5565555443 36888888875432 22221 1123678899999 666676666655559
Q ss_pred EEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC
Q 035558 156 VVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS 235 (253)
Q Consensus 156 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 235 (253)
.++|...... ...+. .......++.. +..++++....+.|..+|..+++... ....+.......+++.|+
T Consensus 192 ~~~~~~g~~~-~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~------~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 192 ECLNPAQPGR-RKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMD------TFHPHKQTRLYGITIALS 261 (267)
T ss_dssp EEEETTEEEE-EEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEE------EECCSSCCCCCCEEEECS
T ss_pred EEEecCCCce-EEEec-CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceE------EEccccccccceeeecCc
Confidence 9999875321 22222 22334566654 33455666677899999998765332 111122224677788777
Q ss_pred C
Q 035558 236 Q 236 (253)
Q Consensus 236 ~ 236 (253)
+
T Consensus 262 ~ 262 (267)
T 1npe_A 262 Q 262 (267)
T ss_dssp C
T ss_pred c
Confidence 5
No 229
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.12 E-value=1.4e-08 Score=78.15 Aligned_cols=212 Identities=12% Similarity=-0.033 Sum_probs=131.1
Q ss_pred CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec
Q 035558 5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA 83 (253)
Q Consensus 5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 83 (253)
+.+.+.+.+ .|..+|.. + +.......+. ..+.++... +++. +..++.++.|..+|.+ ++....+..
T Consensus 108 ~~l~v~t~~~~l~~~d~~-g----~~~~~~~~~~-----~~~~~~~~~-~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~ 174 (330)
T 3hxj_A 108 DILYVTSMDGHLYAINTD-G----TEKWRFKTKK-----AIYATPIVS-EDGT-IYVGSNDNYLYAINPD-GTEKWRFKT 174 (330)
T ss_dssp TEEEEECTTSEEEEECTT-S----CEEEEEECSS-----CCCSCCEEC-TTSC-EEEECTTSEEEEECTT-SCEEEEEEC
T ss_pred CEEEEEecCCEEEEEcCC-C----CEEEEEcCCC-----ceeeeeEEc-CCCE-EEEEcCCCEEEEECCC-CCEeEEEec
Confidence 444444445 88888887 4 4444444333 345555555 4555 6667888999999998 776666655
Q ss_pred ccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCC
Q 035558 84 HDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF 162 (253)
Q Consensus 84 ~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~ 162 (253)
....+.++... ++.+ ..++ +.|..+| .+++.. .........+.++...+ ++ .+.+++.+++ +..+|..
T Consensus 175 ~~~~~~~~~~d~~g~l-~v~t--~~l~~~d-~~g~~~---~~~~~~~~~~~~~~~~~-~g-~l~v~t~~~g-l~~~~~~- 243 (330)
T 3hxj_A 175 NDAITSAASIGKDGTI-YFGS--DKVYAIN-PDGTEK---WNFYAGYWTVTRPAISE-DG-TIYVTSLDGH-LYAINPD- 243 (330)
T ss_dssp SSCCCSCCEECTTCCE-EEES--SSEEEEC-TTSCEE---EEECCSSCCCSCCEECT-TS-CEEEEETTTE-EEEECTT-
T ss_pred CCCceeeeEEcCCCEE-EEEe--CEEEEEC-CCCcEE---EEEccCCcceeceEECC-CC-eEEEEcCCCe-EEEECCC-
Confidence 55566667776 5554 4444 7799999 555422 22222223577777776 55 4555666677 8888743
Q ss_pred CCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE
Q 035558 163 PTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI 242 (253)
Q Consensus 163 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 242 (253)
.. .+..+......+..+.+.+++ .|..++.+|.|..+|. +++... ........+.++...+++. +..+
T Consensus 244 g~-~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~ggl~~~d~-~g~~~~-------~~~~~~~~~~~~~~d~~g~-l~~g 311 (330)
T 3hxj_A 244 GT-EKWRFKTGKRIESSPVIGNTD--TIYFGSYDGHLYAINP-DGTEKW-------NFETGSWIIATPVIDENGT-IYFG 311 (330)
T ss_dssp SC-EEEEEECSSCCCSCCEECTTS--CEEEECTTCEEEEECT-TSCEEE-------EEECSSCCCSCCEECTTCC-EEEE
T ss_pred CC-EeEEeeCCCCccccceEcCCC--eEEEecCCCCEEEECC-CCcEEE-------EEEcCCccccceEEcCCCE-EEEE
Confidence 23 244444434444556666665 6778888989999985 433221 2222345567777778875 7778
Q ss_pred EcCCcEEEEE
Q 035558 243 AFSTKLQILR 252 (253)
Q Consensus 243 ~~~~~i~vw~ 252 (253)
+.+|.+++..
T Consensus 312 t~~G~~~~~~ 321 (330)
T 3hxj_A 312 TRNGKFYALF 321 (330)
T ss_dssp CTTSCEEEEE
T ss_pred cCCCeEEEEe
Confidence 8888888764
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.11 E-value=2.9e-08 Score=84.09 Aligned_cols=184 Identities=9% Similarity=0.055 Sum_probs=117.9
Q ss_pred EEEecCCCCCEEEEEeCCC-------------------eEEEEeccCceeeeeeec--cc-------ccEEEEEec-CC-
Q 035558 47 SFDWNEAEPRRIGTSSIDT-------------------TCTIWDIEREAVDTQLIA--HD-------KEVYDIAWG-GV- 96 (253)
Q Consensus 47 ~~~~~~~~~~~l~~~~~dg-------------------~i~vwd~~~~~~~~~~~~--~~-------~~v~~~~~~-~~- 96 (253)
.++++ ++...++.++.++ .|..+|.++++.+..++. |. ....-+... ++
T Consensus 247 ~~~~d-~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~ 325 (677)
T 1kb0_A 247 SMTFD-AELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK 325 (677)
T ss_dssp CEEEE-TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred ceeEc-CCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence 56777 6677888777664 599999999998877663 21 112222333 55
Q ss_pred --CeEEEEeCCCcEEEEEcCCCCCeeeeeccCCC-------CC-C------------------------eeEEEeeCCCC
Q 035558 97 --GVFASVSADGSVRVFDLRDKEHSTIIYESSEP-------DT-P------------------------LVRLGWNKQDP 142 (253)
Q Consensus 97 --~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~-~------------------------i~~~~~~~~~~ 142 (253)
..++.++.+|.++++|.++++........... .+ + -..++++| +.
T Consensus 326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~ 404 (677)
T 1kb0_A 326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QT 404 (677)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TT
T ss_pred EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CC
Confidence 68899999999999999998854332211000 00 0 12578888 66
Q ss_pred CEEEEEEeC-------------------------------------------CCeEEEEECCCCCCCeeeecccccceeE
Q 035558 143 RYMATIIMD-------------------------------------------SAKVVVLDIRFPTLPVVELQRHQASVNA 179 (253)
Q Consensus 143 ~~l~~~~~~-------------------------------------------~~~i~~~d~~~~~~~~~~~~~~~~~i~~ 179 (253)
.++++...+ +. |..||+.+++. +.++. +..++.+
T Consensus 405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~-l~A~D~~tG~~-~W~~~-~~~~~~~ 481 (677)
T 1kb0_A 405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGR-LLAWDPVAQKA-AWSVE-HVSPWNG 481 (677)
T ss_dssp TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEE-EEEEETTTTEE-EEEEE-ESSSCCC
T ss_pred CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccE-EEEEeCCCCcE-EeecC-CCCCCcC
Confidence 666665432 34 99999988663 44443 3344555
Q ss_pred EEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE
Q 035558 180 IAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI 242 (253)
Q Consensus 180 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 242 (253)
..+...+ .+++.++.||.+++||.++++... ....++.....-+.|..+|+.+++.
T Consensus 482 g~~~~~g-~~v~~g~~dg~l~a~D~~tG~~lw------~~~~~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 482 GTLTTAG-NVVFQGTADGRLVAYHAATGEKLW------EAPTGTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp CEEEETT-TEEEEECTTSEEEEEETTTCCEEE------EEECSSCCCSCCEEEEETTEEEEEE
T ss_pred cceEeCC-CEEEEECCCCcEEEEECCCCceee------eeeCCCCcccCCEEEEeCCEEEEEE
Confidence 5667777 488889999999999999988543 1222333333445667788766654
No 231
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=99.10 E-value=5.4e-07 Score=71.20 Aligned_cols=222 Identities=7% Similarity=-0.059 Sum_probs=130.4
Q ss_pred eEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeeccc
Q 035558 7 LLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHD 85 (253)
Q Consensus 7 ~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 85 (253)
+|..+.. .|+..++... .....+... ..+..++|++.++.++++-...+.|+.+++........+....
T Consensus 89 ~l~~~~~~~I~~i~~~~~----~~~~~~~~~------~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~ 158 (386)
T 3v65_B 89 VLLFANRIDIRQVLPHRS----EYTLLLNNL------ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL 158 (386)
T ss_dssp EEEEECBSCEEEECTTSC----CCEEEECSC------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC
T ss_pred eeEeecCccceeeccCCC----cEEEEecCC------CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC
Confidence 3334444 8888888764 333333333 3577999995556666666677899999988665333333222
Q ss_pred ccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC-CeEEEEECCC
Q 035558 86 KEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS-AKVVVLDIRF 162 (253)
Q Consensus 86 ~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-~~i~~~d~~~ 162 (253)
.....+++. .+.++++-...+.|.+.++........+ . ........++++| .+..|+.+.... ..|..+++..
T Consensus 159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~-~--~~l~~P~giavdp-~~g~ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL-W--QSLEKPRAIALHP-MEGTIYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE-C--SSCSCEEEEEEET-TTTEEEEEECSSSCEEEEEETTS
T ss_pred CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee-c--CCCCCCcEEEEEc-CCCeEEEeccCCCCEEEEEeCCC
Confidence 344567777 4555666666788999888765432222 1 1223678899999 455555544433 4488888865
Q ss_pred CCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE
Q 035558 163 PTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI 242 (253)
Q Consensus 163 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 242 (253)
... .......-...+.|+++|++.++.++-+..+.|..+|+....... ..........++++. .+..+++-
T Consensus 235 ~~~-~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~-------~~~~~~~~P~giav~-~~~ly~td 305 (386)
T 3v65_B 235 SGR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKA-------VISQGLPHPFAITVF-EDSLYWTD 305 (386)
T ss_dssp CSC-EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEE-------EECSSCSSEEEEEEE-TTEEEEEE
T ss_pred CCc-EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEE-------EEECCCCCceEEEEE-CCEEEEee
Confidence 332 222222334578999998775555666677889999986533211 222233456677773 33333344
Q ss_pred EcCCcEEEE
Q 035558 243 AFSTKLQIL 251 (253)
Q Consensus 243 ~~~~~i~vw 251 (253)
...+.|..+
T Consensus 306 ~~~~~V~~~ 314 (386)
T 3v65_B 306 WHTKSINSA 314 (386)
T ss_dssp TTTTEEEEE
T ss_pred CCCCeEEEE
Confidence 445555544
No 232
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=99.10 E-value=1.2e-06 Score=68.21 Aligned_cols=222 Identities=7% Similarity=-0.060 Sum_probs=129.1
Q ss_pred eEEeecCcEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccc
Q 035558 7 LLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDK 86 (253)
Q Consensus 7 ~l~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 86 (253)
++++....|+..+++.. .....+... ..+..++|++.++.++++-...+.|+.+++........+.....
T Consensus 47 ll~~~~~~I~~i~~~g~----~~~~~~~~~------~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~ 116 (349)
T 3v64_C 47 LLFANRIDIRQVLPHRS----EYTLLLNNL------ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE 116 (349)
T ss_dssp EEEECBSCEEEECTTSC----CEEEEECSC------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred eEeecccceEEEeCCCC----eeEEeecCC------CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCC
Confidence 33333337777777663 333333333 35779999955555666666778999999886553333332223
Q ss_pred cEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC-CeEEEEECCCC
Q 035558 87 EVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS-AKVVVLDIRFP 163 (253)
Q Consensus 87 ~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-~~i~~~d~~~~ 163 (253)
....+++. .+.++.+-...+.|.+.++........+ . ........++++| .+..|+.+.... ..|..+++...
T Consensus 117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~-~--~~l~~P~~iavdp-~~g~ly~td~~~~~~I~r~~~dG~ 192 (349)
T 3v64_C 117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL-W--QSLEKPRAIALHP-MEGTIYWTDWGNTPRIEASSMDGS 192 (349)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-C--TTCSCEEEEEEET-TTTEEEEEECSSSCEEEEEETTSC
T ss_pred CccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE-e--CCCCCcceEEEec-CcCeEEEeccCCCCEEEEEeCCCC
Confidence 45677777 4556666667789999998865432222 1 1223578899999 444554444433 34888888753
Q ss_pred CCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEE
Q 035558 164 TLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA 243 (253)
Q Consensus 164 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 243 (253)
.. .......-...+.++++|++.++.++-...+.|..+|+....... ..........++++. .+..+++-.
T Consensus 193 ~~-~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~-------~~~~~~~~P~giav~-~~~ly~td~ 263 (349)
T 3v64_C 193 GR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKA-------VISQGLPHPFAITVF-EDSLYWTDW 263 (349)
T ss_dssp SC-EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------EECSSCSSEEEEEEE-TTEEEEEET
T ss_pred Cc-EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEE-------EEeCCCCCceEEEEE-CCEEEEecC
Confidence 32 222222234578999998775555666677889999987533211 222223455677773 333333444
Q ss_pred cCCcEEEE
Q 035558 244 FSTKLQIL 251 (253)
Q Consensus 244 ~~~~i~vw 251 (253)
..+.|..+
T Consensus 264 ~~~~V~~~ 271 (349)
T 3v64_C 264 HTKSINSA 271 (349)
T ss_dssp TTTEEEEE
T ss_pred CCCeEEEE
Confidence 44444443
No 233
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.09 E-value=6.1e-09 Score=82.36 Aligned_cols=194 Identities=9% Similarity=-0.001 Sum_probs=118.3
Q ss_pred CEEEEEeCCCeEEEEeccCc----eeeeeee-------cccccEEEEEec-CCCeEEEEeCC------CcEEEEEcCCCC
Q 035558 56 RRIGTSSIDTTCTIWDIERE----AVDTQLI-------AHDKEVYDIAWG-GVGVFASVSAD------GSVRVFDLRDKE 117 (253)
Q Consensus 56 ~~l~~~~~dg~i~vwd~~~~----~~~~~~~-------~~~~~v~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~ 117 (253)
.+++++..+++|+++|+.+. +....+. .-......+... ++ +++++..+ |.|.++|..+.+
T Consensus 97 ~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~ 175 (462)
T 2ece_A 97 FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFE 175 (462)
T ss_dssp EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCC
T ss_pred EEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCe
Confidence 34556677889999999755 4555442 011244556666 66 77766655 789999999988
Q ss_pred CeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE------------------eCCCeEEEEECCCCCCCeeeeccc--ccce
Q 035558 118 HSTIIYESSEPDTPLVRLGWNKQDPRYMATII------------------MDSAKVVVLDIRFPTLPVVELQRH--QASV 177 (253)
Q Consensus 118 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~------------------~~~~~i~~~d~~~~~~~~~~~~~~--~~~i 177 (253)
..............-+.+.|+| +++.++++. ..+..|.+||+.+.+ .+.++..- ....
T Consensus 176 v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k-~~~tI~vg~~g~~P 253 (462)
T 2ece_A 176 PLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK-RIHSLTLGEENRMA 253 (462)
T ss_dssp EEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE-EEEEEESCTTEEEE
T ss_pred EEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc-EeeEEecCCCCCcc
Confidence 5554433323333455688899 888888875 224459999998753 35555432 1234
Q ss_pred eEEEE--ecCCCCeEEEec------CCCcEEEEeccCCCCCCCC--CCCCeee-----------ccCCCceeEEEEcCCC
Q 035558 178 NAIAW--APHSSCHICTAG------DDSQALIWDLSSMGQPVEG--GLDPILA-----------YTAGAEIEQLQWSSSQ 236 (253)
Q Consensus 178 ~~~~~--~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~--~~~~~~~-----------~~~~~~v~~~~~~~~~ 236 (253)
..+.| +|++. ++++++ .+++|.+|....+...... ....... .+-...+..|.++|++
T Consensus 254 ~~i~f~~~Pdg~-~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG 332 (462)
T 2ece_A 254 LELRPLHDPTKL-MGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD 332 (462)
T ss_dssp EEEEECSSTTCC-EEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS
T ss_pred ceeEeeECCCCC-EEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC
Confidence 45555 99994 665554 5778887766542100000 0000000 0012457899999999
Q ss_pred CceEEEE-cCCcEEEEEC
Q 035558 237 PDWVAIA-FSTKLQILRV 253 (253)
Q Consensus 237 ~~~~~~~-~~~~i~vw~l 253 (253)
++|.++. ..+.|.++++
T Consensus 333 rfLYVSnrg~d~VavfdV 350 (462)
T 2ece_A 333 KFLYLSLWGIGEVRQYDI 350 (462)
T ss_dssp CEEEEEETTTTEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEe
Confidence 9877655 4678888874
No 234
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.09 E-value=4.3e-08 Score=83.22 Aligned_cols=184 Identities=10% Similarity=0.046 Sum_probs=116.4
Q ss_pred EEEecCCCCCEEEEEeCCCe-------------------EEEEeccCceeeeeeec--cc-------ccEEEEEec-CCC
Q 035558 47 SFDWNEAEPRRIGTSSIDTT-------------------CTIWDIEREAVDTQLIA--HD-------KEVYDIAWG-GVG 97 (253)
Q Consensus 47 ~~~~~~~~~~~l~~~~~dg~-------------------i~vwd~~~~~~~~~~~~--~~-------~~v~~~~~~-~~~ 97 (253)
.+++. ++..+++.++.++. |..+|.++++.+..++. |. .++.-.... ++.
T Consensus 239 ~~~~d-~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 239 SFAYD-PELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp CEEEE-TTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceeEc-CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 56777 66778888887764 99999999998877763 21 122112222 443
Q ss_pred ---eEEEEeCCCcEEEEEcCCCCCeeeeeccC-------------------------CCC-----------CCeeEEEee
Q 035558 98 ---VFASVSADGSVRVFDLRDKEHSTIIYESS-------------------------EPD-----------TPLVRLGWN 138 (253)
Q Consensus 98 ---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------------------~~~-----------~~i~~~~~~ 138 (253)
.++.++.+|.++++|.++++.+....... ... ..-..++++
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 78899999999999999987542111100 000 011237888
Q ss_pred CCCCCEEEEEEe---------------------------------------------CCCeEEEEECCCCCCCeeeeccc
Q 035558 139 KQDPRYMATIIM---------------------------------------------DSAKVVVLDIRFPTLPVVELQRH 173 (253)
Q Consensus 139 ~~~~~~l~~~~~---------------------------------------------~~~~i~~~d~~~~~~~~~~~~~~ 173 (253)
| +..++++... ++. |..||+.+++. +.++..+
T Consensus 398 p-~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~-l~A~D~~tG~~-~W~~~~~ 474 (689)
T 1yiq_A 398 P-DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGK-LIAWDPVKQQA-AWEVPYV 474 (689)
T ss_dssp T-TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEE-EEEEETTTTEE-EEEEEES
T ss_pred C-CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCccee-EEEEECCCCCe-EeEccCC
Confidence 8 5556665532 144 89999988764 4454433
Q ss_pred ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE
Q 035558 174 QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI 242 (253)
Q Consensus 174 ~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 242 (253)
.+.....+...+ .+++.++.||.++.||.++++..- ....++.....-+.|..+|+.+++.
T Consensus 475 -~~~~~g~~~tag-glvf~gt~dg~l~a~D~~tG~~lw------~~~~~~~~~~~p~ty~~~G~qyv~~ 535 (689)
T 1yiq_A 475 -TIFNGGTLSTAG-NLVFEGSADGRVIAYAADTGEKLW------EQPAASGVMAAPVTYSVDGEQYVTF 535 (689)
T ss_dssp -SSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEEE------EEECSSCCCSCCEEEEETTEEEEEE
T ss_pred -CCccCccceECC-CEEEEECCCCcEEEEECCCCccce------eeeCCCCcccCceEEEECCEEEEEE
Confidence 333444556666 489999999999999999988543 1222333333446777888866653
No 235
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.07 E-value=3.1e-08 Score=78.74 Aligned_cols=193 Identities=15% Similarity=0.002 Sum_probs=121.3
Q ss_pred ecCCCCCEEEEEeCC-----CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEe----------CCCcEEEEEc
Q 035558 50 WNEAEPRRIGTSSID-----TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVS----------ADGSVRVFDL 113 (253)
Q Consensus 50 ~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~----------~dg~i~i~d~ 113 (253)
.-|++++.++..... +.|.++|..+++.+..+..-..+ .+.++ +++.++.+. .++.|.++|.
T Consensus 79 ~p~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 79 APAPDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred cCCCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 445677776666543 69999999999999888855555 89999 888887775 4678999999
Q ss_pred CCCCCeeeeecc-CCC---CCCeeEEEeeCCCCCEEEEEEeC-CCeEEEEECCCCCCCeeeecccccceeEEEEecCCCC
Q 035558 114 RDKEHSTIIYES-SEP---DTPLVRLGWNKQDPRYMATIIMD-SAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSC 188 (253)
Q Consensus 114 ~~~~~~~~~~~~-~~~---~~~i~~~~~~~~~~~~l~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 188 (253)
.+.+....+... ... ......+.|+| ++++++++... ...|.++|+.+.+. +..+..-. +....|++.+
T Consensus 157 ~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kv-v~~I~v~g----~~~~~p~g~~ 230 (426)
T 3c75_H 157 VTFLPIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTF-DRMLDVPD----CYHIFPASPT 230 (426)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEE-EEEEECCS----EEEEEEEETT
T ss_pred CCCcEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeE-EEEEEcCC----ceeeccCCCc
Confidence 998865555432 110 12456789999 99999988753 44499999998663 45554311 1334455545
Q ss_pred eEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 189 HICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 189 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
.+++.+.||++.+.+....+..... . .....+.......+.+.+++..++..+..+.+.+.+
T Consensus 231 ~~v~~~~dG~~~~V~~~~~~v~~~~-~-~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD 292 (426)
T 3c75_H 231 VFYMNCRDGSLARVDFADGETKVTN-T-EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQAD 292 (426)
T ss_dssp EEEEEETTSSEEEEECCTTCCEEEE-C-CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEE
T ss_pred EEEEEcCCCCEEEEECCCCcEEEEe-e-eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEe
Confidence 6666677788777777443321000 0 000000111112345677777666666666666654
No 236
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.04 E-value=1.3e-07 Score=70.23 Aligned_cols=189 Identities=10% Similarity=0.016 Sum_probs=124.9
Q ss_pred CceEEeec---C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 5 PDLLATSS---D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 5 ~~~l~~~~---~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
+.++++.+ + .|++.|+.++ +....+.-... .....+++. .+.+.++.-.++.+.++|..+.+.+..
T Consensus 32 g~Lyvstg~~~~s~v~~iD~~tg----~v~~~i~l~~~----~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~ 101 (266)
T 2iwa_A 32 DTLFESTGLYGRSSVRQVALQTG----KVENIHKMDDS----YFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKN 101 (266)
T ss_dssp TEEEEEECSTTTCEEEEEETTTC----CEEEEEECCTT----CCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred CeEEEECCCCCCCEEEEEECCCC----CEEEEEecCCC----cceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEE
Confidence 56666654 3 9999999997 66666542210 122355655 234445555678999999999998888
Q ss_pred eecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCC--CCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558 81 LIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSE--PDTPLVRLGWNKQDPRYMATIIMDSAKVVVL 158 (253)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~ 158 (253)
+......-..++. +++.++.+..++.|.++|..+.+....+..... .-..++.+.|. ++. +.+.......|.+.
T Consensus 102 i~~g~~~g~glt~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~-lyvn~~~~~~V~vI 177 (266)
T 2iwa_A 102 FTHQMKDGWGLAT-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGE-VWANIWQTDCIARI 177 (266)
T ss_dssp EECCSSSCCEEEE-CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTE-EEEEETTSSEEEEE
T ss_pred EECCCCCeEEEEE-CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CCE-EEEecCCCCeEEEE
Confidence 7632122233444 666666666789999999998876555543221 11246778887 454 44444433349999
Q ss_pred ECCCCCCCeeeeccc-------------ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558 159 DIRFPTLPVVELQRH-------------QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 159 d~~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
|..+++. +..+... ....+.++|+|++.++++++...+++.+.++....
T Consensus 178 D~~tg~V-~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 178 SAKDGTL-LGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp ETTTCCE-EEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred ECCCCcE-EEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 9998763 4554321 13568999999987788888899999999987754
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.03 E-value=4.5e-08 Score=80.08 Aligned_cols=222 Identities=13% Similarity=-0.008 Sum_probs=140.2
Q ss_pred CCceEEeec-C--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecC-CCCCEEEEEe-----------------
Q 035558 4 KPDLLATSS-D--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNE-AEPRRIGTSS----------------- 62 (253)
Q Consensus 4 ~~~~l~~~~-~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~----------------- 62 (253)
+|++|.... + .|.+.|+... ++.+++.-... ..+..+++.. |++.++++++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~----~~~~ii~ip~g----~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~ 171 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVM----KCDAILEIPNA----KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVA 171 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTT----EEEEEEECSSC----CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG
T ss_pred CCCEEEEEcCCCCEEEEEECCCc----eEeeEEeCCCC----CCCcceeeeecCCCcEEEEecccccccCCCCccccccc
Confidence 445554444 3 7999999986 66664432211 3467888754 6788888774
Q ss_pred -CCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCC----------------------------------
Q 035558 63 -IDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADG---------------------------------- 106 (253)
Q Consensus 63 -~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg---------------------------------- 106 (253)
.++.+.+.|.++.+....+.--. ....++++ +++++++.+.+.
T Consensus 172 ~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~ 250 (595)
T 1fwx_A 172 NYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY 250 (595)
T ss_dssp GEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred ccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCe
Confidence 24578999999988777766322 34556777 777777776442
Q ss_pred ----cEEEEEcCC--CCC-eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC-----------Cee
Q 035558 107 ----SVRVFDLRD--KEH-STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL-----------PVV 168 (253)
Q Consensus 107 ----~i~i~d~~~--~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-----------~~~ 168 (253)
.|.+.|.++ ++. ...+.... ...++.++| +++++++++.....|.++|+.+.+. ...
T Consensus 251 ~~i~~V~VID~~~~~~~~~~~~Ipvg~----~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~ 325 (595)
T 1fwx_A 251 QELNGVKVVDGRKEASSLFTRYIPIAN----NPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA 325 (595)
T ss_dssp EEETTEEEEECSGGGCCSSEEEEEEES----SCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE
T ss_pred eEECcEEEEeCcccCCceeEEEEecCC----CceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE
Confidence 477777776 332 22222211 456799999 9998888876665699999985420 112
Q ss_pred eecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC------CCCCCCCCCeeeccCCCc-----eeEEEEcCCCC
Q 035558 169 ELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG------QPVEGGLDPILAYTAGAE-----IEQLQWSSSQP 237 (253)
Q Consensus 169 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~ 237 (253)
... -......++|+|+| +..++.-.|+.|.+||+.... ... ........|-.+ -.++..+|+|+
T Consensus 326 ~v~-vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~---~vi~kidV~yqpGh~~~~~g~t~~~DGk 400 (595)
T 1fwx_A 326 EPE-LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVD---PIKDKLDVHYQPGHLKTVMGETLDATND 400 (595)
T ss_dssp CCB-CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCC---CEEEEEECSSCEEEEEETTTTSTTCCSS
T ss_pred EcC-CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccc---eeEEEeecccccccceeccceEeCCCCC
Confidence 222 23457889999999 677788899999999998721 111 001122223222 13345689999
Q ss_pred ceEEEEc
Q 035558 238 DWVAIAF 244 (253)
Q Consensus 238 ~~~~~~~ 244 (253)
++++...
T Consensus 401 ~l~~~Nk 407 (595)
T 1fwx_A 401 WLVCLSK 407 (595)
T ss_dssp EEEEEES
T ss_pred EEEEcCC
Confidence 8876553
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.00 E-value=3.3e-08 Score=76.12 Aligned_cols=175 Identities=9% Similarity=-0.077 Sum_probs=106.8
Q ss_pred CCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeE
Q 035558 55 PRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVR 134 (253)
Q Consensus 55 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 134 (253)
+..+..++.++.|..+|.+ ++...........+.++....+..+..++.++.|..+|.. ++...... .....+.+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~---~~~~~~~~ 181 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFK---TNDAITSA 181 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEE---CSSCCCSC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEe---cCCCceee
Confidence 4567778888999999998 7766555544445555555523446677888999999988 54322221 22235666
Q ss_pred EEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCC
Q 035558 135 LGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGG 214 (253)
Q Consensus 135 ~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 214 (253)
+...+ ++.+++ ++ ++ +..+| .++.. ..........+.++...+++ .|..++.++.+..+|.. +....
T Consensus 182 ~~~d~-~g~l~v-~t--~~-l~~~d-~~g~~-~~~~~~~~~~~~~~~~~~~g--~l~v~t~~~gl~~~~~~-g~~~~--- 248 (330)
T 3hxj_A 182 ASIGK-DGTIYF-GS--DK-VYAIN-PDGTE-KWNFYAGYWTVTRPAISEDG--TIYVTSLDGHLYAINPD-GTEKW--- 248 (330)
T ss_dssp CEECT-TCCEEE-ES--SS-EEEEC-TTSCE-EEEECCSSCCCSCCEECTTS--CEEEEETTTEEEEECTT-SCEEE---
T ss_pred eEEcC-CCEEEE-Ee--CE-EEEEC-CCCcE-EEEEccCCcceeceEECCCC--eEEEEcCCCeEEEECCC-CCEeE---
Confidence 66665 555444 44 66 99999 54442 44554455668888888887 46667778888888743 22111
Q ss_pred CCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 215 LDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 215 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
........+..+...+++. +..++.++.+..++
T Consensus 249 ----~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 249 ----RFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAIN 281 (330)
T ss_dssp ----EEECSSCCCSCCEECTTSC-EEEECTTCEEEEEC
T ss_pred ----EeeCCCCccccceEcCCCe-EEEecCCCCEEEEC
Confidence 1112222333455555554 55666666666554
No 239
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.97 E-value=4.2e-06 Score=64.23 Aligned_cols=223 Identities=13% Similarity=0.039 Sum_probs=128.0
Q ss_pred eEEeecCcEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC----ceeeeeee
Q 035558 7 LLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER----EAVDTQLI 82 (253)
Q Consensus 7 ~l~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~ 82 (253)
+|++....|+..+++.. +....+..- ....+++|++.++.++++-..++.|+.+++.. ......+.
T Consensus 4 ll~~~~~~I~~i~~~~~----~~~~~~~~~------~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~ 73 (316)
T 1ijq_A 4 LFFTNRHEVRKMTLDRS----EYTSLIPNL------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 73 (316)
T ss_dssp EEEECBSSEEEEETTSC----CCEEEECSC------SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred EEEECCCeEEEEECCCc----ceEehhcCC------CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe
Confidence 44444458999999875 333333332 45779999944555666666678999999875 22222222
Q ss_pred cccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC-CeEEEEE
Q 035558 83 AHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS-AKVVVLD 159 (253)
Q Consensus 83 ~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-~~i~~~d 159 (253)
..-.....+++. .++++++-...+.|.+.++...... .+... .......++++| .+..|+.+.... ..|...+
T Consensus 74 ~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~-~~~~~--~~~~P~~iavdp-~~g~ly~~d~~~~~~I~~~~ 149 (316)
T 1ijq_A 74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-TLFRE--NGSKPRAIVVDP-VHGFMYWTDWGTPAKIKKGG 149 (316)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEE-EEEEC--TTCCEEEEEEET-TTTEEEEEECSSSCEEEEEE
T ss_pred CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceE-EEEEC--CCCCcceEEeCC-CCCEEEEEccCCCCeEEEEc
Confidence 222345778887 4455556567889999998765422 22221 123678999999 444444444432 3388888
Q ss_pred CCCCCCCeeee-cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeec-cCCCceeEEEEcCCCC
Q 035558 160 IRFPTLPVVEL-QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAY-TAGAEIEQLQWSSSQP 237 (253)
Q Consensus 160 ~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~ 237 (253)
+.... ...+ ...-...+.++++|++.++.++-+..+.|..+|+....... .... .......++++.. +.
T Consensus 150 ~dG~~--~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~------~~~~~~~~~~P~giav~~-~~ 220 (316)
T 1ijq_A 150 LNGVD--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT------ILEDEKRLAHPFSLAVFE-DK 220 (316)
T ss_dssp TTSCC--EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE------EEECTTTTSSEEEEEEET-TE
T ss_pred CCCCC--eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEE------EeecCCccCCcEEEEEEC-CE
Confidence 76432 2322 22234678999999875555666677899999987533211 1111 1233456777743 43
Q ss_pred ceEEEEcCCcEEEEE
Q 035558 238 DWVAIAFSTKLQILR 252 (253)
Q Consensus 238 ~~~~~~~~~~i~vw~ 252 (253)
.+++-...+.|..++
T Consensus 221 ly~~d~~~~~V~~~~ 235 (316)
T 1ijq_A 221 VFWTDIINEAIFSAN 235 (316)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEEECCCCeEEEEe
Confidence 333444455555543
No 240
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.97 E-value=2.4e-07 Score=72.81 Aligned_cols=219 Identities=9% Similarity=-0.024 Sum_probs=125.4
Q ss_pred CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec
Q 035558 5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA 83 (253)
Q Consensus 5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 83 (253)
+.+++.+.+ .|..+|..++ +.+..................... +..++.++.++.|..+|.++++.+.....
T Consensus 144 ~~v~v~~~~g~l~~~d~~tG----~~~W~~~~~~~~~~~~~~~~~~~~---~~~v~~g~~~g~l~~~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 144 GLVLIHTSNGQLQALNEADG----AVKWTVNLDMPSLSLRGESAPTTA---FGAAVVGGDNGRVSAVLMEQGQMIWQQRI 216 (376)
T ss_dssp TEEEEECTTSEEEEEETTTC----CEEEEEECCC-----CCCCCCEEE---TTEEEECCTTTEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEcCCCeEEEEECCCC----cEEEEEeCCCCceeecCCCCcEEE---CCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence 334444445 7888888776 444444332200000000111222 45677788899999999999987766542
Q ss_pred cccc----EEE---EEec---CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC
Q 035558 84 HDKE----VYD---IAWG---GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA 153 (253)
Q Consensus 84 ~~~~----v~~---~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 153 (253)
.... +.. +... .+..++.++.++.+..+|.++++.. ..... .....+.. .+..+++++.++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~---w~~~~--~~~~~~~~---~~~~l~~~~~~g~ 288 (376)
T 3q7m_A 217 SQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIM---WKREL--GSVNDFIV---DGNRIYLVDQNDR 288 (376)
T ss_dssp CC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEE---EEECC--CCEEEEEE---ETTEEEEEETTCC
T ss_pred ccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEE---eeccC--CCCCCceE---ECCEEEEEcCCCe
Confidence 2100 000 1011 4567788888999999999988733 22111 13344444 3567777777888
Q ss_pred eEEEEECCCCCCCeeeec-ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeE-EE
Q 035558 154 KVVVLDIRFPTLPVVELQ-RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQ-LQ 231 (253)
Q Consensus 154 ~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~-~~ 231 (253)
+..+|..+++. +.... .....+...... + ..|+.++.+|.+.++|..+++... ........+.. ..
T Consensus 289 -l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~--~-~~l~v~~~~g~l~~~d~~tG~~~~-------~~~~~~~~~~~~~~ 356 (376)
T 3q7m_A 289 -VMALTIDGGVT-LWTQSDLLHRLLTSPVLY--N-GNLVVGDSEGYLHWINVEDGRFVA-------QQKVDSSGFQTEPV 356 (376)
T ss_dssp -EEEEETTTCCE-EEEECTTTTSCCCCCEEE--T-TEEEEECTTSEEEEEETTTCCEEE-------EEECCTTCBCSCCE
T ss_pred -EEEEECCCCcE-EEeecccCCCcccCCEEE--C-CEEEEEeCCCeEEEEECCCCcEEE-------EEecCCCcceeCCE
Confidence 99999988763 43333 112222333332 3 378888999999999999876432 11111222221 22
Q ss_pred EcCCCCceEEEEcCCcEEEEE
Q 035558 232 WSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 232 ~~~~~~~~~~~~~~~~i~vw~ 252 (253)
. .++ .++.++.++.+..|+
T Consensus 357 ~-~~~-~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 357 A-ADG-KLLIQAKDGTVYSIT 375 (376)
T ss_dssp E-ETT-EEEEEBTTSCEEEEE
T ss_pred E-ECC-EEEEEeCCCEEEEEe
Confidence 2 233 588888899999886
No 241
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.96 E-value=4.3e-07 Score=66.84 Aligned_cols=200 Identities=12% Similarity=0.085 Sum_probs=124.5
Q ss_pred ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCC--eEEEEeccCceeeeeeecccccEE--EEEecCCCeEEEEe
Q 035558 28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT--TCTIWDIEREAVDTQLIAHDKEVY--DIAWGGVGVFASVS 103 (253)
Q Consensus 28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~l~~~~ 103 (253)
+.++++ .|... .-...+.|+ ++.++.+.+.+| .|+++|+++++.+..+.-.. ... .++..++.++...-
T Consensus 32 ~vv~~~-phd~~---~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw 104 (262)
T 3nol_A 32 QIVHSY-PHDTK---AFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTW 104 (262)
T ss_dssp EEEEEE-ECCTT---CEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEES
T ss_pred EEEEEe-cCCCC---cccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEe
Confidence 445555 44422 234678887 467777777766 89999999999888776332 332 34444445555556
Q ss_pred CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc--cc---ccee
Q 035558 104 ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR--HQ---ASVN 178 (253)
Q Consensus 104 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~---~~i~ 178 (253)
.++.+.++|..+.+....+.... ++ ..++ + ++..|+.+..++. |.++|..+.+. +..+.- .. ..++
T Consensus 105 ~~~~v~v~D~~t~~~~~ti~~~~--eG--~glt--~-dg~~L~~SdGs~~-i~~iDp~T~~v-~~~I~V~~~g~~~~~lN 175 (262)
T 3nol_A 105 KNGLGFVWNIRNLRQVRSFNYDG--EG--WGLT--H-NDQYLIMSDGTPV-LRFLDPESLTP-VRTITVTAHGEELPELN 175 (262)
T ss_dssp SSSEEEEEETTTCCEEEEEECSS--CC--CCEE--E-CSSCEEECCSSSE-EEEECTTTCSE-EEEEECEETTEECCCEE
T ss_pred eCCEEEEEECccCcEEEEEECCC--Cc--eEEe--c-CCCEEEEECCCCe-EEEEcCCCCeE-EEEEEeccCCccccccc
Confidence 78999999999988655554321 11 2333 4 5666666655655 99999988663 444332 11 2355
Q ss_pred EEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCee-----eccCCCceeEEEEcCCCCceEEEEcC
Q 035558 179 AIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPIL-----AYTAGAEIEQLQWSSSQPDWVAIAFS 245 (253)
Q Consensus 179 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~ 245 (253)
.+.|. +| ++.+..-.++.|.+.|.++++........... ......-.+.|||+|+++.|+..+..
T Consensus 176 ELe~~-~G-~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 176 ELEWV-DG-EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEEE-TT-EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred eeEEE-CC-EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 67876 56 56666667889999999988743210000000 11123467999999998877766643
No 242
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.96 E-value=1e-07 Score=80.76 Aligned_cols=230 Identities=10% Similarity=0.033 Sum_probs=135.6
Q ss_pred CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeE-EEecCCCCCEEEEEeC------CCeEEEEeccCc
Q 035558 4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTS-FDWNEAEPRRIGTSSI------DTTCTIWDIERE 75 (253)
Q Consensus 4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~------dg~i~vwd~~~~ 75 (253)
++.+++.+.+ .|..+|..++ +.+..+...........+.+ ... .+..++.++. +|.|+.+|.+++
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG----~~~W~~~~~~~~~~~~~~~~~p~v---~~~~v~v~~~~~~~~~~g~v~a~D~~tG 200 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATG----KEVWHQNTFEGQKGSLTITGAPRV---FKGKVIIGNGGAEYGVRGYITAYDAETG 200 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTC----CEEEEEETTTTCCSSCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTC
T ss_pred CCEEEEEcCCCEEEEEECCCC----CEEeeecCCcCcCcCcccccCcEE---ECCEEEEEecccccCCCCEEEEEECCCC
Confidence 3444454456 9999999888 66665554410000011111 111 1345555543 689999999999
Q ss_pred eeeeeeeccccc--------------------------------EEEEEec-CCCeEEEEeCCC----------------
Q 035558 76 AVDTQLIAHDKE--------------------------------VYDIAWG-GVGVFASVSADG---------------- 106 (253)
Q Consensus 76 ~~~~~~~~~~~~--------------------------------v~~~~~~-~~~~l~~~~~dg---------------- 106 (253)
+.+..+...... ...+++. +++.++.+..++
T Consensus 201 ~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~ 280 (677)
T 1kb0_A 201 ERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNL 280 (677)
T ss_dssp CEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCT
T ss_pred cEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCe
Confidence 987766532111 1246677 677888777664
Q ss_pred ---cEEEEEcCCCCCeeeeeccCCCC-------CCeeEEEeeCCCC---CEEEEEEeCCCeEEEEECCCCCCCeeeeccc
Q 035558 107 ---SVRVFDLRDKEHSTIIYESSEPD-------TPLVRLGWNKQDP---RYMATIIMDSAKVVVLDIRFPTLPVVELQRH 173 (253)
Q Consensus 107 ---~i~i~d~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~---~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 173 (253)
.|..+|.++++..-..... .+. ....-+.... ++ ..+++++.+|. ++++|.++++. +..+...
T Consensus 281 ~~~sv~AlD~~TG~~~W~~~~~-~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~-l~~lD~~tG~~-l~~~~~~ 356 (677)
T 1kb0_A 281 YLASIVALDPDTGKYKWHYQET-PGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGF-FFVLDRTNGKF-ISAKNFV 356 (677)
T ss_dssp TTTEEEEECTTTCCEEEEEESS-TTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSE-EEEEETTTCCE-EEEEESS
T ss_pred eeEEEEEEECCCCCEEEEEecC-CCcccccccCCCcEEEeccc-CCcEeeEEEEECCCCE-EEEEECCCCCE-ecccccc
Confidence 5999999998743332221 111 1222233333 55 57788888887 99999988763 3332211
Q ss_pred c-----------cce------------------------eEEEEecCCCCeEEEecC-----------------------
Q 035558 174 Q-----------ASV------------------------NAIAWAPHSSCHICTAGD----------------------- 195 (253)
Q Consensus 174 ~-----------~~i------------------------~~~~~~~~~~~~l~~~~~----------------------- 195 (253)
. .++ ..++++|+. .++++...
T Consensus 357 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~ 435 (677)
T 1kb0_A 357 PVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT-GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQ 435 (677)
T ss_dssp CCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT-TEEEEEEEECCCEEEECTTCCTTCCCTTSTT
T ss_pred ccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC-CEEEEeChhcceeeecccccccccccccccc
Confidence 0 001 257889987 46666432
Q ss_pred --------------------CCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 196 --------------------DSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 196 --------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
.|.|..||+.+++.. ....+..++.+..+...+..++.++.++.+++|++
T Consensus 436 ~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~--------W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~ 505 (677)
T 1kb0_A 436 SGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA--------WSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHA 505 (677)
T ss_dssp GGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE--------EEEEESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred cccccccccccccccCCCCCccEEEEEeCCCCcEE--------eecCCCCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence 277999999887632 22233444555556666767778888999999874
No 243
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.96 E-value=8.2e-07 Score=65.39 Aligned_cols=185 Identities=9% Similarity=-0.064 Sum_probs=120.7
Q ss_pred eeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccE--EEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeee
Q 035558 45 LTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEV--YDIAWGGVGVFASVSADGSVRVFDLRDKEHSTII 122 (253)
Q Consensus 45 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 122 (253)
...+.|+ ++.++.+.+.+|.|+++|+++++.+..+ - .... ..++...+.++...-.++.+.+||..+.+....+
T Consensus 57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp EEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred cceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 4678887 4677788888899999999999987776 2 2233 3355555556666667999999999998865555
Q ss_pred eccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc--cc---cceeEEEEecCCCCeEEEecCCC
Q 035558 123 YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR--HQ---ASVNAIAWAPHSSCHICTAGDDS 197 (253)
Q Consensus 123 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~---~~i~~~~~~~~~~~~l~~~~~dg 197 (253)
... . .-..++ + ++..|+.+..++. |.++|..+.+. +..+.- +. ..++.+.|. +| ++.+..-.+.
T Consensus 133 ~~~--~--eGwGLt--~-Dg~~L~vSdGs~~-l~~iDp~T~~v-~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw~s~ 201 (268)
T 3nok_A 133 RYS--G--EGWGLC--Y-WNGKLVRSDGGTM-LTFHEPDGFAL-VGAVQVKLRGQPVELINELECA-NG-VIYANIWHSS 201 (268)
T ss_dssp ECS--S--CCCCEE--E-ETTEEEEECSSSE-EEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TT-EEEEEETTCS
T ss_pred eCC--C--ceeEEe--c-CCCEEEEECCCCE-EEEEcCCCCeE-EEEEEeCCCCcccccccccEEe-CC-EEEEEECCCC
Confidence 432 1 123344 3 5667777666666 99999988663 444432 22 245677877 66 4566665788
Q ss_pred cEEEEeccCCCCCCCCCCCCee------eccCCCceeEEEEcCCCCceEEEEc
Q 035558 198 QALIWDLSSMGQPVEGGLDPIL------AYTAGAEIEQLQWSSSQPDWVAIAF 244 (253)
Q Consensus 198 ~i~iwd~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~ 244 (253)
.|.+.|.++++........... ......-.+.|||+|+++.|+..+.
T Consensus 202 ~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 202 DVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred eEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 9999999988743200000000 1112346799999998877776654
No 244
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.94 E-value=1.7e-07 Score=73.28 Aligned_cols=71 Identities=10% Similarity=0.039 Sum_probs=52.9
Q ss_pred EEeeCCCCCEEEEEEe-C--------CCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEec-CCCcEEEEec
Q 035558 135 LGWNKQDPRYMATIIM-D--------SAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAG-DDSQALIWDL 204 (253)
Q Consensus 135 ~~~~~~~~~~l~~~~~-~--------~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~iwd~ 204 (253)
++++| +++.++++.. . +. +.++|+.+.+. +..+.... ....++|+|++.+++++.. .++.|.++|+
T Consensus 269 v~~s~-dg~~lyV~~~~~~~~~~~~~~~-~~ViD~~t~~v-v~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~ 344 (368)
T 1mda_H 269 VAKLK-NTDGIMILTVEHSRSCLAAAEN-TSSVTASVGQT-SGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDA 344 (368)
T ss_dssp EEEET-TTTEEEEEEEECSSCTTSCEEE-EEEEESSSCCE-EECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred eEEcC-CCCEEEEEeccccCcccccCCC-EEEEECCCCeE-EEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEEC
Confidence 68999 7777766543 2 34 77999998764 56555433 5789999999954667777 5999999999
Q ss_pred cCCCC
Q 035558 205 SSMGQ 209 (253)
Q Consensus 205 ~~~~~ 209 (253)
.+.+.
T Consensus 345 ~t~kv 349 (368)
T 1mda_H 345 ASDQD 349 (368)
T ss_dssp SSCEE
T ss_pred CCCcE
Confidence 99763
No 245
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.91 E-value=2.4e-07 Score=68.19 Aligned_cols=172 Identities=13% Similarity=0.084 Sum_probs=111.7
Q ss_pred CCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCee--EEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558 4 KPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLT--SFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT 79 (253)
Q Consensus 4 ~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 79 (253)
++.++.+.+. .|+++|+.++ +....+ -. .... .+++. ...+.+..-.++.+.+||.++.+.+.
T Consensus 64 ~~~Ly~stG~~g~v~~iD~~Tg----kv~~~~-l~------~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 64 QGHFFESTGHQGTLRQLSLESA----QPVWME-RL------GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp TTEEEEEETTTTEEEECCSSCS----SCSEEE-EC------TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCCEEEEEECCCC----cEEeEE-CC------CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEE
Confidence 3556666664 8999999987 555554 22 1222 35553 34555555578899999999999998
Q ss_pred eeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCC--CCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558 80 QLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSE--PDTPLVRLGWNKQDPRYMATIIMDSAKVVV 157 (253)
Q Consensus 80 ~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~ 157 (253)
++... ..-..+++ +++.|+.+..++.|.++|..+.+....+..... .-..++.+.|. ++.+. +.......|.+
T Consensus 131 ti~~~-~eGwGLt~-Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~ly-anvw~s~~I~v 205 (268)
T 3nok_A 131 TTRYS-GEGWGLCY-WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVIY-ANIWHSSDVLE 205 (268)
T ss_dssp EEECS-SCCCCEEE-ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEE-EEETTCSEEEE
T ss_pred EEeCC-CceeEEec-CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEEE-EEECCCCeEEE
Confidence 88742 22345554 566666666789999999999876555543221 11255677877 56544 45543444999
Q ss_pred EECCCCCCCeeeecc-------------cccceeEEEEecCCCCeEEEec
Q 035558 158 LDIRFPTLPVVELQR-------------HQASVNAIAWAPHSSCHICTAG 194 (253)
Q Consensus 158 ~d~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~l~~~~ 194 (253)
.|.++++. +..+.. -....+.+|++|++.++++||-
T Consensus 206 IDp~TG~V-~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 206 IDPATGTV-VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp ECTTTCBE-EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EeCCCCcE-EEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 99988763 333321 1236799999998866777765
No 246
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.90 E-value=2.2e-06 Score=62.50 Aligned_cols=200 Identities=10% Similarity=-0.029 Sum_probs=123.8
Q ss_pred ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCC--eEEEEeccCceeeeeeeccccc-EEEEEecCCCeEEEEeC
Q 035558 28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT--TCTIWDIEREAVDTQLIAHDKE-VYDIAWGGVGVFASVSA 104 (253)
Q Consensus 28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~l~~~~~ 104 (253)
+.+.++ .|... .-...+.|+ . +.++.+.+.+| .|+.+|+++++.+..+.-.... --.++..++.++...-.
T Consensus 10 ~v~~~~-phd~~---~ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~ 83 (243)
T 3mbr_X 10 RVVKRY-PHDTT---AFTEGLFYL-R-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR 83 (243)
T ss_dssp EEEEEE-ECCTT---CCEEEEEEE-T-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS
T ss_pred EEEEEc-CCCCc---cccccEEEE-C-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee
Confidence 455555 45432 345688998 3 56666766654 8999999999988877532221 12344445556666667
Q ss_pred CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc--cc---cceeE
Q 035558 105 DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR--HQ---ASVNA 179 (253)
Q Consensus 105 dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~---~~i~~ 179 (253)
++.+.++|..+.+....+.... + -..++ + ++..|+++..++. |.++|..+.+. +.++.- +. ..++.
T Consensus 84 ~~~v~v~D~~tl~~~~ti~~~~--~--Gwglt--~-dg~~L~vSdgs~~-l~~iDp~t~~~-~~~I~V~~~g~~~~~lNe 154 (243)
T 3mbr_X 84 NHEGFVYDLATLTPRARFRYPG--E--GWALT--S-DDSHLYMSDGTAV-IRKLDPDTLQQ-VGSIKVTAGGRPLDNLNE 154 (243)
T ss_dssp SSEEEEEETTTTEEEEEEECSS--C--CCEEE--E-CSSCEEEECSSSE-EEEECTTTCCE-EEEEECEETTEECCCEEE
T ss_pred CCEEEEEECCcCcEEEEEeCCC--C--ceEEe--e-CCCEEEEECCCCe-EEEEeCCCCeE-EEEEEEccCCccccccee
Confidence 9999999999987655554321 2 23444 3 5566666666666 99999988663 444432 21 24566
Q ss_pred EEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCC---Cee-e--ccCCCceeEEEEcCCCCceEEEEc
Q 035558 180 IAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLD---PIL-A--YTAGAEIEQLQWSSSQPDWVAIAF 244 (253)
Q Consensus 180 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~-~--~~~~~~v~~~~~~~~~~~~~~~~~ 244 (253)
+.|. +| +.++..-.+..|.+.|.++++........ +.. . .....-.+.|||+|++..|+..+.
T Consensus 155 Le~~-~G-~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 155 LEWV-NG-ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEE-TT-EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred eEEe-CC-EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 7766 55 45555556889999999998743200000 000 0 112346799999998877776654
No 247
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.89 E-value=1.7e-06 Score=67.94 Aligned_cols=222 Identities=8% Similarity=-0.052 Sum_probs=123.0
Q ss_pred CCceEEeecC-cEEEEEccCCccccceeeeecCCCCcc----ccCCee-EEEecCCCCCEEEEEeCCCeEEEEeccCcee
Q 035558 4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSE----YCGPLT-SFDWNEAEPRRIGTSSIDTTCTIWDIEREAV 77 (253)
Q Consensus 4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~----~~~~v~-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 77 (253)
++.++++..+ .|..+|..++ +.+.......... ....+. .... .+..++.++.++.|..+|.++++.
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG----~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~~g~l~a~d~~tG~~ 125 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDG----KEIWSVSLAEKDGWFSKEPALLSGGVTV---SGGHVYIGSEKAQVYALNTSDGTV 125 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTC----CEEEEEECCC---CCSCCCCCEEEEEEE---ETTEEEEEETTSEEEEEETTTCCE
T ss_pred CCEEEEEcCCCeEEEEEccCC----ceeeeecCccccccccccCcccccCceE---eCCEEEEEcCCCEEEEEECCCCCE
Confidence 3445555545 9999999887 5444443321000 002232 2222 356788888999999999999998
Q ss_pred eeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCC--CCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558 78 DTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPD--TPLVRLGWNKQDPRYMATIIMDSAKV 155 (253)
Q Consensus 78 ~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~~~~~~i 155 (253)
+............... .+..++.++.++.|..+|.++++..-......... ........ .+..++++..++. +
T Consensus 126 ~W~~~~~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~~~v~~g~~~g~-l 200 (376)
T 3q7m_A 126 AWQTKVAGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT---AFGAAVVGGDNGR-V 200 (376)
T ss_dssp EEEEECSSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE---ETTEEEECCTTTE-E
T ss_pred EEEEeCCCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE---ECCEEEEEcCCCE-E
Confidence 7666533221111122 35678888899999999999887433222111000 00011122 2346677777777 9
Q ss_pred EEEECCCCCCCeeeeccccc--c--------e-eEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCC
Q 035558 156 VVLDIRFPTLPVVELQRHQA--S--------V-NAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAG 224 (253)
Q Consensus 156 ~~~d~~~~~~~~~~~~~~~~--~--------i-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 224 (253)
..+|.++++. +........ . + ..... .+ ..++.++.++.+..+|.++++... ... .
T Consensus 201 ~~~d~~tG~~-~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~-~~v~~~~~~g~l~~~d~~tG~~~w--------~~~-~ 267 (376)
T 3q7m_A 201 SAVLMEQGQM-IWQQRISQATGSTEIDRLSDVDTTPVV--VN-GVVFALAYNGNLTALDLRSGQIMW--------KRE-L 267 (376)
T ss_dssp EEEETTTCCE-EEEEECCC-----------CCCCCCEE--ET-TEEEEECTTSCEEEEETTTCCEEE--------EEC-C
T ss_pred EEEECCCCcE-EEEEecccCCCCcccccccccCCCcEE--EC-CEEEEEecCcEEEEEECCCCcEEe--------ecc-C
Confidence 9999987663 333321110 0 1 01111 13 367888889999999998876332 111 1
Q ss_pred CceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 225 AEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 225 ~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
.....+... +..++.++.++.+..++
T Consensus 268 ~~~~~~~~~--~~~l~~~~~~g~l~~~d 293 (376)
T 3q7m_A 268 GSVNDFIVD--GNRIYLVDQNDRVMALT 293 (376)
T ss_dssp CCEEEEEEE--TTEEEEEETTCCEEEEE
T ss_pred CCCCCceEE--CCEEEEEcCCCeEEEEE
Confidence 223333332 33466666677776665
No 248
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.89 E-value=6.6e-06 Score=60.73 Aligned_cols=201 Identities=8% Similarity=0.026 Sum_probs=127.3
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec-ccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCee
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA-HDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHST 120 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~ 120 (253)
..+..++|+|..+.++++...++.|...|.. ++.+..+.- -......+++. ++.++++.-.++.+.++++.......
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~ 105 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVK 105 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeee
Confidence 6799999994445566667788899999998 777776642 22467788888 77766666677889999887665321
Q ss_pred ---eee-c--cCCCCCCeeEEEeeCCCCCEEEEEEeCCC-eEEEEECCCCCCCeeeec-------ccccceeEEEEecCC
Q 035558 121 ---IIY-E--SSEPDTPLVRLGWNKQDPRYMATIIMDSA-KVVVLDIRFPTLPVVELQ-------RHQASVNAIAWAPHS 186 (253)
Q Consensus 121 ---~~~-~--~~~~~~~i~~~~~~~~~~~~l~~~~~~~~-~i~~~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~~ 186 (253)
... . ....+.....++|+| .++.|.++...+. .|..|+-......+..+. .+...+.+++++|..
T Consensus 106 ~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~t 184 (255)
T 3qqz_A 106 ILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQK 184 (255)
T ss_dssp EEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTT
T ss_pred eeeeeccccccccccCCcceEEEeC-CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCC
Confidence 111 1 112344678999999 5555555555544 245554111111122221 122357899999987
Q ss_pred CCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeec-c------CCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 187 SCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAY-T------AGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 187 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~------~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
.++++.......+.++|....-... ..+. + .-...-.|+|.++|. +..++..+.+.+++
T Consensus 185 g~lliLS~~s~~L~~~d~~g~~~~~------~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 185 NTLLVLSHESRALQEVTLVGEVIGE------MSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFT 250 (255)
T ss_dssp TEEEEEETTTTEEEEECTTCCEEEE------EECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEE
T ss_pred CeEEEEECCCCeEEEEcCCCCEEEE------EEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEE
Confidence 6777888888999999976542111 1111 1 123678999999997 66667777666553
No 249
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.87 E-value=3.1e-07 Score=77.97 Aligned_cols=229 Identities=7% Similarity=0.021 Sum_probs=129.9
Q ss_pred CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecC--CCCCEEEEEe------CCCeEEEEeccCc
Q 035558 5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNE--AEPRRIGTSS------IDTTCTIWDIERE 75 (253)
Q Consensus 5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~------~dg~i~vwd~~~~ 75 (253)
+.+++.+.+ .|..+|..++ +.+..+...... .....+..+| .++ .++.+. .+|.|+.||.+++
T Consensus 122 g~v~v~~~dg~l~AlDa~TG----~~~W~~~~~~~~---~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG 193 (689)
T 1yiq_A 122 GKVYVGVLDGRLEAIDAKTG----QRAWSVDTRADH---KRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETG 193 (689)
T ss_dssp TEEEEECTTSEEEEEETTTC----CEEEEEECCSCT---TSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTC
T ss_pred CEEEEEccCCEEEEEECCCC----CEeeeecCcCCC---CCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCC
Confidence 444444446 9999999888 555554432000 0001111110 134 444443 3689999999999
Q ss_pred eeeeeeeccc-------------------------------ccEEEEEec-CCCeEEEEeCCCc----------------
Q 035558 76 AVDTQLIAHD-------------------------------KEVYDIAWG-GVGVFASVSADGS---------------- 107 (253)
Q Consensus 76 ~~~~~~~~~~-------------------------------~~v~~~~~~-~~~~l~~~~~dg~---------------- 107 (253)
+.+..+.... ..-..+++. +.++++.+..++.
T Consensus 194 ~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y 273 (689)
T 1yiq_A 194 KEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLF 273 (689)
T ss_dssp CEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTT
T ss_pred cEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCcee
Confidence 9876654210 001246676 6788888887764
Q ss_pred ---EEEEEcCCCCCeeeeeccCC------CCCCeeEEEeeCCCCC---EEEEEEeCCCeEEEEECCCCCCCeeeeccc--
Q 035558 108 ---VRVFDLRDKEHSTIIYESSE------PDTPLVRLGWNKQDPR---YMATIIMDSAKVVVLDIRFPTLPVVELQRH-- 173 (253)
Q Consensus 108 ---i~i~d~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~---~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-- 173 (253)
|..+|.++++..-....... ...+........ ++. .++.++.+|. ++++|.++++. +......
T Consensus 274 ~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~~~~~v~~~~~~G~-l~~lD~~tG~~-l~~~~~~~~ 350 (689)
T 1yiq_A 274 LSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-DGKPRKVLMQAPKNGF-FYVIDRATGEL-LSAKGIVPQ 350 (689)
T ss_dssp TTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSE-EEEEETTTCCE-EEEEESSCC
T ss_pred eeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-CCcEEEEEEEECCCCe-EEEEECCCCCE-ecccccccc
Confidence 99999999974332222111 111222222222 443 6777777887 99999988763 3111100
Q ss_pred --------------------------c-----------cceeEEEEecCCCCeEEEecC---------------------
Q 035558 174 --------------------------Q-----------ASVNAIAWAPHSSCHICTAGD--------------------- 195 (253)
Q Consensus 174 --------------------------~-----------~~i~~~~~~~~~~~~l~~~~~--------------------- 195 (253)
. ..-..++|+|+. .++++...
T Consensus 351 ~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~~~~~~~~~~~~~ 429 (689)
T 1yiq_A 351 SWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT-GLVYIPAHIMSAYYEHIPEAPKRNPFKSM 429 (689)
T ss_dssp SSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT-TEEEEEEEECCEEEECCSSCCCCCSCTTS
T ss_pred ccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC-CEEEEeccccceeeeeccccccccccccc
Confidence 0 001237888887 46665422
Q ss_pred ------------------------CCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEE
Q 035558 196 ------------------------DSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQIL 251 (253)
Q Consensus 196 ------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw 251 (253)
+|.|+.||+.+++..- ...+..+...-.+...+..++.++.|+.++.|
T Consensus 430 ~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W--------~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~ 501 (689)
T 1yiq_A 430 YQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAW--------EVPYVTIFNGGTLSTAGNLVFEGSADGRVIAY 501 (689)
T ss_dssp CCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEE--------EEEESSSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred cccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEe--------EccCCCCccCccceECCCEEEEECCCCcEEEE
Confidence 3778889998876332 22223333334555566677788899999998
Q ss_pred EC
Q 035558 252 RV 253 (253)
Q Consensus 252 ~l 253 (253)
+.
T Consensus 502 D~ 503 (689)
T 1yiq_A 502 AA 503 (689)
T ss_dssp ET
T ss_pred EC
Confidence 74
No 250
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.87 E-value=1.4e-05 Score=63.39 Aligned_cols=186 Identities=13% Similarity=0.022 Sum_probs=113.8
Q ss_pred eEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce----eeeee
Q 035558 7 LLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA----VDTQL 81 (253)
Q Consensus 7 ~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~ 81 (253)
+|..+.. .|+..+++.. .....+... ..+..++|++.++.++++-...+.|+.+++.... ....+
T Consensus 85 ~ll~~~~~~I~~i~l~~~----~~~~~~~~~------~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~ 154 (400)
T 3p5b_L 85 YLFFTNRHEVRKMTLDRS----EYTSLIPNL------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI 154 (400)
T ss_dssp EEEEEETTEEEEECTTSC----SCEEEECSC------SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE
T ss_pred eeEEeccceeEEEccCCc----ceeEecccc------CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE
Confidence 4444444 8888888774 333333322 4678999994455555655567889999887521 22222
Q ss_pred ecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE-e-CCCeEEE
Q 035558 82 IAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII-M-DSAKVVV 157 (253)
Q Consensus 82 ~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~-~~~~i~~ 157 (253)
.........+++. .++++.+-...+.|.+.++........+.. .......++++| .+..|+... . .+. |..
T Consensus 155 ~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~---~~~~P~~iavdp-~~g~ly~td~~~~~~-I~~ 229 (400)
T 3p5b_L 155 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE---NGSKPRAIVVDP-VHGFMYWTDWGTPAK-IKK 229 (400)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC---SSCCEEEEEEET-TTTEEEEEECSSSCC-EEE
T ss_pred eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC---CCCCcceEEEec-ccCeEEEEeCCCCCE-EEE
Confidence 2233456778887 555666666788999999886653323221 222578999999 444554444 2 245 888
Q ss_pred EECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558 158 LDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 158 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
.++..... .......-...+.|+++|++.++.++-...+.|..+|+....
T Consensus 230 ~~~dG~~~-~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~ 279 (400)
T 3p5b_L 230 GGLNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 279 (400)
T ss_dssp EETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred EeCCCCcc-EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc
Confidence 88875332 222232335678999998875455555667899999987543
No 251
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.85 E-value=1.2e-05 Score=61.32 Aligned_cols=218 Identities=7% Similarity=-0.016 Sum_probs=122.0
Q ss_pred CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC-C-eEEEEeccCceeee
Q 035558 4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID-T-TCTIWDIEREAVDT 79 (253)
Q Consensus 4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g-~i~vwd~~~~~~~~ 79 (253)
+++++++.. + .|..|+.+.. ....+.. . .....+++. ++++++++.... + .|..++..+++...
T Consensus 42 ~g~lyv~d~~~~~I~~~d~~g~-----~~~~~~~-~-----~~p~gia~~-~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 42 DGTIFVTNHEVGEIVSITPDGN-----QQIHATV-E-----GKVSGLAFT-SNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp TSCEEEEETTTTEEEEECTTCC-----EEEEEEC-S-----SEEEEEEEC-TTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCCEEEEeCCCCeEEEECCCCc-----eEEEEeC-C-----CCceeEEEc-CCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 556666654 3 8888887652 2222222 1 357889999 778866655432 2 46667777766432
Q ss_pred eee-cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeee-ee------ccCCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558 80 QLI-AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTI-IY------ESSEPDTPLVRLGWNKQDPRYMATIIM 150 (253)
Q Consensus 80 ~~~-~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~------~~~~~~~~i~~~~~~~~~~~~l~~~~~ 150 (253)
... ........++.. ++..+++-..++.|..+|..+++.... .. .....-.....+ +| ++..++++..
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~-dg~~lyv~d~ 186 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR-FGNFLYVSNT 186 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE-ETTEEEEEET
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc-CCCEEEEEeC
Confidence 221 111223444444 444555555688899988765421110 00 001111134445 77 6777777666
Q ss_pred CCCeEEEEECCC-CCC-CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCcee
Q 035558 151 DSAKVVVLDIRF-PTL-PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIE 228 (253)
Q Consensus 151 ~~~~i~~~d~~~-~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 228 (253)
....|..+|+.. ... ....+. .......++++++| +++++....+.|.++|.. ++... ..........++
T Consensus 187 ~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG-~l~va~~~~~~V~~~~~~-G~~~~-----~~~~~~~~~~p~ 258 (306)
T 2p4o_A 187 EKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEG-NLYGATHIYNSVVRIAPD-RSTTI-----IAQAEQGVIGST 258 (306)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTC-CEEEECBTTCCEEEECTT-CCEEE-----EECGGGTCTTEE
T ss_pred CCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCC-CEEEEeCCCCeEEEECCC-CCEEE-----EeecccccCCce
Confidence 555599999874 221 111111 11345778999999 577777778899999865 32110 001111235688
Q ss_pred EEEEc---CCCCceEEEEc
Q 035558 229 QLQWS---SSQPDWVAIAF 244 (253)
Q Consensus 229 ~~~~~---~~~~~~~~~~~ 244 (253)
+++|. |++..|+.+..
T Consensus 259 ~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 259 AVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp EEEECCSTTTTTEEEEEEC
T ss_pred EEEEecccCCCCEEEEECC
Confidence 99998 88766665443
No 252
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.85 E-value=1e-06 Score=64.19 Aligned_cols=172 Identities=13% Similarity=0.132 Sum_probs=110.0
Q ss_pred CceEEeecC----cEEEEEccCCccccceeeeecCCCCccccCCe--eEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558 5 PDLLATSSD----FLRVWRISDEDRRVELKSLLNGNKNSEYCGPL--TSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD 78 (253)
Q Consensus 5 ~~~l~~~~~----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 78 (253)
+.++.+++. .|+.+|+.++ +......... .. -.++.. .+++....-.++.+.++|.++.+.+
T Consensus 31 ~~LyestG~~g~S~v~~vD~~tg----kv~~~~~l~~------~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 31 GHLYESTGETGRSSVRKVDLETG----RILQRAEVPP------PYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPR 98 (243)
T ss_dssp TEEEEEECCTTSCEEEEEETTTC----CEEEEEECCT------TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred CEEEEECCCCCCceEEEEECCCC----CEEEEEeCCC------CcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEE
Confidence 455555553 8999999997 6666655432 22 234443 3445555557889999999999999
Q ss_pred eeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCC--CCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558 79 TQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSE--PDTPLVRLGWNKQDPRYMATIIMDSAKVV 156 (253)
Q Consensus 79 ~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~~~~~i~ 156 (253)
.++.... .-..++. ++..|+.+..++.|.++|..+.+....+..... .-..++.+.+. ++.+++..-.++. |.
T Consensus 99 ~ti~~~~-~Gwglt~-dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~--~G~lyanvw~s~~-I~ 173 (243)
T 3mbr_X 99 ARFRYPG-EGWALTS-DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV--NGELLANVWLTSR-IA 173 (243)
T ss_dssp EEEECSS-CCCEEEE-CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTTTE-EE
T ss_pred EEEeCCC-CceEEee-CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--CCEEEEEECCCCe-EE
Confidence 8887432 3345554 456666666688999999999876555443211 11255667776 5555544333444 99
Q ss_pred EEECCCCCCCeeeecc-------------cccceeEEEEecCCCCeEEEec
Q 035558 157 VLDIRFPTLPVVELQR-------------HQASVNAIAWAPHSSCHICTAG 194 (253)
Q Consensus 157 ~~d~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~l~~~~ 194 (253)
+.|.++++. +..+.. .....+.++++|++.++++||-
T Consensus 174 vIDp~tG~V-~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 174 RIDPASGKV-VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EECTTTCBE-EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEECCCCCE-EEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 999988763 333221 1235799999998866666665
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.83 E-value=3.5e-07 Score=67.27 Aligned_cols=173 Identities=13% Similarity=0.127 Sum_probs=108.9
Q ss_pred CCceEEeecC----cEEEEEccCCccccceeeeecCCCCccccCCee--EEEecCCCCCEEEEEeCCCeEEEEeccCcee
Q 035558 4 KPDLLATSSD----FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLT--SFDWNEAEPRRIGTSSIDTTCTIWDIEREAV 77 (253)
Q Consensus 4 ~~~~l~~~~~----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 77 (253)
++.++.+++. .|+++|+.++ +....+.... ... .++.. ...+.+..-.++.+.++|.++.+.
T Consensus 52 ~~~LyestG~~g~S~v~~vD~~Tg----kv~~~~~l~~------~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 52 NGYFYESTGLNGRSSIRKVDIESG----KTLQQIELGK------RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp TTEEEEEEEETTEEEEEEECTTTC----CEEEEEECCT------TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCE
T ss_pred CCEEEEECCCCCCceEEEEECCCC----cEEEEEecCC------ccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcE
Confidence 3555666552 8999999997 6666655432 233 34443 234444444688999999999999
Q ss_pred eeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccC--CCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558 78 DTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESS--EPDTPLVRLGWNKQDPRYMATIIMDSAKV 155 (253)
Q Consensus 78 ~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~~~~~i 155 (253)
+.++.... .-..+++ ++..|+.+..++.|.++|..+.+....+.... ..-..++.+.|. ++.+. +.......|
T Consensus 120 ~~ti~~~~-eG~glt~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~ly-an~w~~~~I 194 (262)
T 3nol_A 120 VRSFNYDG-EGWGLTH-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV--DGEIF-ANVWQTNKI 194 (262)
T ss_dssp EEEEECSS-CCCCEEE-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--TTEEE-EEETTSSEE
T ss_pred EEEEECCC-CceEEec-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--CCEEE-EEEccCCeE
Confidence 98887422 2234444 56666666667889999999887655544321 111245667876 56544 445434449
Q ss_pred EEEECCCCCCCeeeecc------------cccceeEEEEecCCCCeEEEec
Q 035558 156 VVLDIRFPTLPVVELQR------------HQASVNAIAWAPHSSCHICTAG 194 (253)
Q Consensus 156 ~~~d~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~~l~~~~ 194 (253)
.+.|.++++. +..+.. -....+.+||+|++.+++++|-
T Consensus 195 ~vIDp~tG~V-~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 195 VRIDPETGKV-TGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEECTTTCBE-EEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEECCCCcE-EEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 9999988763 333321 1235699999999865555554
No 254
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.79 E-value=1.8e-05 Score=60.68 Aligned_cols=226 Identities=8% Similarity=-0.013 Sum_probs=128.1
Q ss_pred CceEEeecCcEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee-eeec
Q 035558 5 PDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT-QLIA 83 (253)
Q Consensus 5 ~~~l~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~ 83 (253)
+.+|++....|+..+++... ......+.+- ....+++|++.++.++++-...+.|+.+++....... .+..
T Consensus 5 p~ll~~~~~~I~~i~l~~~~--~~~~~~~~~~------~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~ 76 (318)
T 3sov_A 5 PLLLYANRRDLRLVDATNGK--ENATIVVGGL------EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS 76 (318)
T ss_dssp CEEEEECEEEEEEEETTCTT--SCCEEEEEEE------EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE
T ss_pred cEEEEEccCeEEEEECCCCc--eEEEEEecCC------CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC
Confidence 33444443499999998741 0111122222 2456899995456666666677899999987653222 2222
Q ss_pred ccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe-CCCeEEEEEC
Q 035558 84 HDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM-DSAKVVVLDI 160 (253)
Q Consensus 84 ~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-~~~~i~~~d~ 160 (253)
.-.....+++. .+.++.+-...+.|.++++...... .+.. ........++++| .+..|+.+.. ....|...++
T Consensus 77 ~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~l~~--~~~~~P~giavdp-~~g~ly~td~~~~~~I~r~~~ 152 (318)
T 3sov_A 77 GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK-VLFW--QELDQPRAIALDP-SSGFMYWTDWGEVPKIERAGM 152 (318)
T ss_dssp CCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEC--SSCSSEEEEEEEG-GGTEEEEEECSSSCEEEEEET
T ss_pred CCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE-EEEe--CCCCCccEEEEeC-CCCEEEEEecCCCCEEEEEEc
Confidence 22345667777 5556666667789999998765432 2221 2223678899998 4445555443 2233888887
Q ss_pred CCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE
Q 035558 161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 240 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 240 (253)
..... .......-...+.++++|++.++.++-+..+.|..+|+....... ...+......++++..+ ..+.
T Consensus 153 dG~~~-~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~-------~~~~~~~~P~glav~~~-~lyw 223 (318)
T 3sov_A 153 DGSSR-FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA-------VVKGSLPHPFALTLFED-ILYW 223 (318)
T ss_dssp TSCSC-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------EECSCCSCEEEEEEETT-EEEE
T ss_pred CCCCe-EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEE-------EecCCCCCceEEEEeCC-EEEE
Confidence 64322 222222234568999999775555666678899999987533211 22223445566666432 2233
Q ss_pred EEEcCCcEEEE
Q 035558 241 AIAFSTKLQIL 251 (253)
Q Consensus 241 ~~~~~~~i~vw 251 (253)
+-...+.|..+
T Consensus 224 td~~~~~V~~~ 234 (318)
T 3sov_A 224 TDWSTHSILAC 234 (318)
T ss_dssp EETTTTEEEEE
T ss_pred EecCCCeEEEE
Confidence 33334444443
No 255
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.75 E-value=2.4e-05 Score=61.71 Aligned_cols=190 Identities=7% Similarity=-0.086 Sum_probs=112.1
Q ss_pred CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
.++.++.+-.. .|+.++++.. .....+.... .....+++.+..+.++++-...+.|.+.++........
T Consensus 126 ~~~~ly~~D~~~~~I~r~~~~g~----~~~~~~~~~~-----~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l 196 (386)
T 3v65_B 126 RRELVFWSDVTLDRILRANLNGS----NVEEVVSTGL-----ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL 196 (386)
T ss_dssp TTTEEEEEETTTTEEEEEETTSC----CEEEEECSSC-----SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEE
T ss_pred CCCeEEEEeCCCCcEEEEecCCC----CcEEEEeCCC-----CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEe
Confidence 34445544332 6777776653 2222222211 23457788744566666666678899988875433322
Q ss_pred eecccccEEEEEec-CCCe-EEEEeCC-CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558 81 LIAHDKEVYDIAWG-GVGV-FASVSAD-GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV 157 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~-l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~ 157 (253)
+...-.....+++. .+.. +.+-... +.|..+++.......... ..-.....|+++| ++..|+.+......|..
T Consensus 197 ~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~---~~~~~PnGlavd~-~~~~lY~aD~~~~~I~~ 272 (386)
T 3v65_B 197 LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD---THLFWPNGLTIDY-AGRRMYWVDAKHHVIER 272 (386)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC---SSCSCEEEEEEEG-GGTEEEEEETTTTEEEE
T ss_pred ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE---CCCCCeeeEEEeC-CCCEEEEEECCCCEEEE
Confidence 33333567888998 4444 4444444 778888887654322221 1122578899998 56666666655555999
Q ss_pred EECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558 158 LDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 158 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
+|+..... ...+........++++. .+ .++++-...+.|..++..++.
T Consensus 273 ~d~dG~~~-~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 273 ANLDGSHR-KAVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp ECTTSCSC-EEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCC
T ss_pred EeCCCCee-EEEEECCCCCceEEEEE-CC-EEEEeeCCCCeEEEEECCCCc
Confidence 99875332 22333334456788884 33 577777788899998865554
No 256
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.72 E-value=4.2e-06 Score=64.32 Aligned_cols=189 Identities=11% Similarity=0.039 Sum_probs=111.9
Q ss_pred eeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec--------------------ccccEEEEEec-CCCeEEEEe
Q 035558 45 LTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA--------------------HDKEVYDIAWG-GVGVFASVS 103 (253)
Q Consensus 45 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--------------------~~~~v~~~~~~-~~~~l~~~~ 103 (253)
..+++|. +++++++++..++.|..|+..+++.. .+.. ....+..+++. +...|+.+.
T Consensus 21 p~~i~~d-~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 21 PNSFTFD-STNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCEECC-TTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred ceEEEEc-CCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 4578898 77887888888999999998765432 1210 11357888887 455666665
Q ss_pred CCCcEEEEEcCCCCCeeeeeccC-CCCCCeeEEEeeCCCCCEEEEEEe-----------------CCCeEEEEECCCCCC
Q 035558 104 ADGSVRVFDLRDKEHSTIIYESS-EPDTPLVRLGWNKQDPRYMATIIM-----------------DSAKVVVLDIRFPTL 165 (253)
Q Consensus 104 ~dg~i~i~d~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~-----------------~~~~i~~~d~~~~~~ 165 (253)
..+.|..+|..++.......... ........+++.+.++++.++-.. .+. |..+|..+..
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~-v~~~d~~~~~- 176 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR-LIKYDPSTKE- 176 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEE-EEEEETTTTE-
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCce-EEEEeCCCCE-
Confidence 55568888876543211111111 111246778888734555554322 234 8888876543
Q ss_pred CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEc
Q 035558 166 PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAF 244 (253)
Q Consensus 166 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 244 (253)
+..+.......+.++++|++..++++-...+.|.+|++....... ......... ...+++.++|..+++...
T Consensus 177 -~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-----~~~~~~~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 177 -TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-----AEVLVKIPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp -EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-----EEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred -EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-----cceEEeCCC-CCCeEECCCCCEEEEecC
Confidence 222222223457899999984244454667899999987532110 011111223 788999999986666543
No 257
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.71 E-value=1.9e-05 Score=60.15 Aligned_cols=195 Identities=10% Similarity=0.050 Sum_probs=111.7
Q ss_pred CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCC--cEEEEEcCCCCCee
Q 035558 44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADG--SVRVFDLRDKEHST 120 (253)
Q Consensus 44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg--~i~i~d~~~~~~~~ 120 (253)
....++|+ ++++++++-..++.|..||.... ....+. ....+..+++. +++++++..... .|..+|..+++..
T Consensus 33 ~pegia~~-~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~- 108 (306)
T 2p4o_A 33 FLENLASA-PDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE- 108 (306)
T ss_dssp CEEEEEEC-TTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE-
T ss_pred CcceEEEC-CCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE-
Confidence 46689999 68887777667899999998753 333232 34568899999 888666554332 4666776666532
Q ss_pred eeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeee---------ecccccceeEEEEecCCCCeEE
Q 035558 121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE---------LQRHQASVNAIAWAPHSSCHIC 191 (253)
Q Consensus 121 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~---------~~~~~~~i~~~~~~~~~~~~l~ 191 (253)
.+..... ......++..+ ++..+++-...+. |+++|.......+.. ....-...+.+ +|++..+++
T Consensus 109 ~~~~~~~-~~~~~g~~~~~-~~~~~v~d~~~g~-i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv 183 (306)
T 2p4o_A 109 TLLTLPD-AIFLNGITPLS-DTQYLTADSYRGA-IWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYV 183 (306)
T ss_dssp EEEECTT-CSCEEEEEESS-SSEEEEEETTTTE-EEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEE
T ss_pred EEEeCCC-ccccCcccccC-CCcEEEEECCCCe-EEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEE
Confidence 2222211 11234444443 4433433333555 999997643110110 00111234555 788744556
Q ss_pred EecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 192 TAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 192 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
+-...+.|..|++....... . ............+++.++|..+++....+.|.+++
T Consensus 184 ~d~~~~~I~~~~~~~~g~~~----~-~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~ 239 (306)
T 2p4o_A 184 SNTEKMLLLRIPVDSTDKPG----E-PEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIA 239 (306)
T ss_dssp EETTTTEEEEEEBCTTSCBC----C-CEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred EeCCCCEEEEEEeCCCCCCC----c-cEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEEC
Confidence 66678899999987521111 0 11111124567789999997666666677777764
No 258
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.69 E-value=5.1e-05 Score=59.01 Aligned_cols=158 Identities=8% Similarity=-0.102 Sum_probs=98.3
Q ss_pred CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCC-eEEEEeCC-CcEEEEEcCCCCCee
Q 035558 44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVG-VFASVSAD-GSVRVFDLRDKEHST 120 (253)
Q Consensus 44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d-g~i~i~d~~~~~~~~ 120 (253)
....+++.+..+.++++-...+.|.+.++........+...-.....+++. .+. ++.+-... +.|..+++.......
T Consensus 117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~ 196 (349)
T 3v64_C 117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI 196 (349)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred CccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE
Confidence 346788874456666666677899999987543332232333567889998 444 44454444 788888887654222
Q ss_pred eeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEE
Q 035558 121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQAL 200 (253)
Q Consensus 121 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 200 (253)
... ..-.....++++| ++..|..+......|..+|+..... ...+........++++. .+ .++++-...+.|.
T Consensus 197 ~~~---~~~~~PnGla~d~-~~~~lY~aD~~~~~I~~~~~dG~~~-~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~ 269 (349)
T 3v64_C 197 IAD---THLFWPNGLTIDY-AGRRMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITVF-ED-SLYWTDWHTKSIN 269 (349)
T ss_dssp SCC---SSCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEE
T ss_pred EEE---CCCCCcceEEEeC-CCCEEEEEECCCCEEEEEeCCCCce-EEEEeCCCCCceEEEEE-CC-EEEEecCCCCeEE
Confidence 211 1223578899999 5666666665555599999875332 22233333456778884 34 4667777788888
Q ss_pred EEeccCCC
Q 035558 201 IWDLSSMG 208 (253)
Q Consensus 201 iwd~~~~~ 208 (253)
.++..+++
T Consensus 270 ~~~~~~G~ 277 (349)
T 3v64_C 270 SANKFTGK 277 (349)
T ss_dssp EEETTTCC
T ss_pred EEEccCCC
Confidence 88855544
No 259
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.66 E-value=6.6e-06 Score=67.51 Aligned_cols=193 Identities=10% Similarity=0.030 Sum_probs=125.4
Q ss_pred CCCEEEEEeC-CCeEEEEeccCceeeeeeec-ccccEEEEEec---CCCeEEEEe------------------CCCcEEE
Q 035558 54 EPRRIGTSSI-DTTCTIWDIEREAVDTQLIA-HDKEVYDIAWG---GVGVFASVS------------------ADGSVRV 110 (253)
Q Consensus 54 ~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~---~~~~l~~~~------------------~dg~i~i 110 (253)
++++++.... ++.|.+.|+.+.+....+.- ....+..+++. +++++++++ .++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 5667666554 55799999999987774431 22457788873 677777774 3467999
Q ss_pred EEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC--------------------------------------
Q 035558 111 FDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS-------------------------------------- 152 (253)
Q Consensus 111 ~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-------------------------------------- 152 (253)
.|..+.+....+.... ...-++++| +++++++.+.+.
T Consensus 180 ID~~t~~v~~qI~Vgg----~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG----NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp EETTTTEEEEEEEESS----CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EECCCCeEEEEEEeCC----CccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 9999876444443322 234577888 788888877554
Q ss_pred CeEEEEECCC--CCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCC----CCCCCCCeeeccCCCc
Q 035558 153 AKVVVLDIRF--PTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQP----VEGGLDPILAYTAGAE 226 (253)
Q Consensus 153 ~~i~~~d~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~ 226 (253)
. |.+.|.++ ....+..+.. .....++.++|||...++++..+.+|.++|+.+.+.. ............-+..
T Consensus 255 ~-V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g 332 (595)
T 1fwx_A 255 G-VKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG 332 (595)
T ss_dssp T-EEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC
T ss_pred c-EEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCC
Confidence 3 67777776 3221233332 3356789999999545556668999999999965210 0000001122234567
Q ss_pred eeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 227 IEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 227 v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
...++|+|+|..+++.-.++.|.+|++
T Consensus 333 P~h~aF~~dG~aY~t~~ldsqV~kwdi 359 (595)
T 1fwx_A 333 PLHTAFDGRGNAYTSLFLDSQVVKWNI 359 (595)
T ss_dssp EEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred cceEEECCCCeEEEEEecCCcEEEEEh
Confidence 889999999954457778999999974
No 260
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.64 E-value=4.5e-05 Score=58.50 Aligned_cols=192 Identities=15% Similarity=0.107 Sum_probs=108.3
Q ss_pred CCeeEEEecCC-CCCEEEEEeCCCeEEEEeccCceeeeeeec-----ccccEEEEEec--CCCeEEEEeC----------
Q 035558 43 GPLTSFDWNEA-EPRRIGTSSIDTTCTIWDIEREAVDTQLIA-----HDKEVYDIAWG--GVGVFASVSA---------- 104 (253)
Q Consensus 43 ~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~--~~~~l~~~~~---------- 104 (253)
..+..+++. + +++ |+.+...+.|..+|..+++. ..+.. .......+++. +++++++-..
T Consensus 80 ~~p~gi~~~-~~~g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~ 156 (322)
T 2fp8_A 80 GRTYDISYN-LQNNQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQ 156 (322)
T ss_dssp CCEEEEEEE-TTTTE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHH
T ss_pred CCCceEEEc-CCCCc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccce
Confidence 357789998 5 555 55555555688888875542 22211 11246777776 3455544322
Q ss_pred -------CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC-Ceeeecccccc
Q 035558 105 -------DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL-PVVELQRHQAS 176 (253)
Q Consensus 105 -------dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~ 176 (253)
++.|..+|..+++........ .....++++| +++.++++......|..|++..... ....+....+
T Consensus 157 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~----~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g- 230 (322)
T 2fp8_A 157 IMDTSDKTGRLIKYDPSTKETTLLLKEL----HVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN- 230 (322)
T ss_dssp HHHHTCCCEEEEEEETTTTEEEEEEEEE----SCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-
T ss_pred ehcccCCCceEEEEeCCCCEEEEeccCC----ccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-
Confidence 366888887665422222111 1345789999 8887766655433499999875321 1222221223
Q ss_pred eeEEEEecCCCCeEEEecC----------CCcEEEEeccCCCCCCCCCCCCeeeccC----CCceeEEEEcCCCCceEEE
Q 035558 177 VNAIAWAPHSSCHICTAGD----------DSQALIWDLSSMGQPVEGGLDPILAYTA----GAEIEQLQWSSSQPDWVAI 242 (253)
Q Consensus 177 i~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~ 242 (253)
...+++.++| ++.++... .+.|..+|.. ++... ..... ...+..+++ .++..+++.
T Consensus 231 P~gi~~d~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~-------~~~~~~g~~~~~~~~~~~-~~g~L~v~~ 300 (322)
T 2fp8_A 231 PGNIKRNADG-HFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILE-------VIPLPPPFAGEHFEQIQE-HDGLLYIGT 300 (322)
T ss_dssp EEEEEECTTS-CEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEE-------EEECCTTTTTSCCCEEEE-ETTEEEEEC
T ss_pred CCCeEECCCC-CEEEEecCcccccccCCCccEEEEECCC-CCEEE-------EEECCCCCccccceEEEE-eCCEEEEee
Confidence 7789999998 45555443 4667777764 22111 11111 245666766 456555555
Q ss_pred EcCCcEEEEEC
Q 035558 243 AFSTKLQILRV 253 (253)
Q Consensus 243 ~~~~~i~vw~l 253 (253)
...+.|..+++
T Consensus 301 ~~~~~i~~~~~ 311 (322)
T 2fp8_A 301 LFHGSVGILVY 311 (322)
T ss_dssp SSCSEEEEEEC
T ss_pred cCCCceEEEec
Confidence 56778887764
No 261
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.61 E-value=0.00018 Score=61.95 Aligned_cols=186 Identities=14% Similarity=0.041 Sum_probs=111.4
Q ss_pred EEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc----eeeeeee
Q 035558 8 LATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE----AVDTQLI 82 (253)
Q Consensus 8 l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~ 82 (253)
|..+.. .|+..++... .....+... ..+..++|.+.++.++++-...+.|+.+++... .....+.
T Consensus 398 Ll~an~~~Ir~i~l~~~----~~~~l~~~~------~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~ 467 (791)
T 3m0c_C 398 LFFTNRHEVRKMTLDRS----EYTSLIPNL------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 467 (791)
T ss_dssp EEEECBSSEEEECTTSC----CCEEEECSC------SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred cccccccceeEeeccCC----cceeeecCC------CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe
Confidence 333444 7777777663 333333332 457789998445666666666788999988753 2222222
Q ss_pred cccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe-CCCeEEEEE
Q 035558 83 AHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM-DSAKVVVLD 159 (253)
Q Consensus 83 ~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-~~~~i~~~d 159 (253)
..-.....|++. .++++++-...+.|.+.++.......++. ........|+++| ....|+.+.. ....|...+
T Consensus 468 ~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~---~~l~~P~gIaVDp-~~g~LYwtD~g~~~~I~~~~ 543 (791)
T 3m0c_C 468 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---ENGSKPRAIVVDP-VHGFMYWTDWGTPAKIKKGG 543 (791)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE---CTTCCEEEEEEET-TTTEEEEEECSSSCEEEEEE
T ss_pred cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe---CCCCCcceEEEec-CCCCEEEecCCCCCeEEEEe
Confidence 233455678887 44566666778899999998665322222 1222578999999 4444544443 313488888
Q ss_pred CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558 160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
+..... ...+...-...+.|++++.+.+++++-...+.|..+++....
T Consensus 544 ~dG~~~-~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 544 LNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 591 (791)
T ss_dssp TTSCCE-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred cCCCce-EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence 865332 222222335688999998774455555567789999886543
No 262
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.59 E-value=0.00024 Score=61.48 Aligned_cols=196 Identities=9% Similarity=0.016 Sum_probs=119.0
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee-------cccccEEEEEec-CCCeEEEEeCCCcEEEEEcC
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI-------AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLR 114 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~ 114 (253)
..|.++... .++. |..|+.++-|..++..+..... +. -....|.++... +++ |-.|+.++-|..||..
T Consensus 310 ~~i~~i~~D-~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~ 385 (795)
T 4a2l_A 310 RSVRSIFMD-SQGG-MWLGTYFGGLNYYHPIRNRFKN-IRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPI 385 (795)
T ss_dssp SCEEEEEEC-TTSC-EEEEESSSCEEEECGGGGSSEE-ECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTT
T ss_pred CcEEEEEEe-CCcC-EEEEECCCCeEEeCCCcccceE-EcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCC
Confidence 578999887 6665 5567777778889876554221 11 023568888887 555 4456777679999987
Q ss_pred CCCCeeeeecc-----CCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeec-----ccccceeEEEEec
Q 035558 115 DKEHSTIIYES-----SEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQ-----RHQASVNAIAWAP 184 (253)
Q Consensus 115 ~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-----~~~~~i~~~~~~~ 184 (253)
++......... ......|.++...+ ++++|.+|+.+++ |..||..+.. ...+. .....|.++...+
T Consensus 386 ~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~G-l~~~d~~~~~--~~~~~~~~~~l~~~~v~~i~~d~ 461 (795)
T 4a2l_A 386 TQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGG-LSILHRNSGQ--VENFNQRNSQLVNENVYAILPDG 461 (795)
T ss_dssp TCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTE-EEEEETTTCC--EEEECTTTSCCSCSCEEEEEECS
T ss_pred CCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCc-eeEEeCCCCc--EEEeecCCCCcCCCeeEEEEECC
Confidence 76522211111 11234788998887 6774666777777 9999987654 33332 1245789999888
Q ss_pred CCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 185 HSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 185 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
++ . |..|+. +-+.+||..+......... .....-....|.++...+++..+++. . +.+..|+
T Consensus 462 ~g-~-lwigt~-~Gl~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~ 523 (795)
T 4a2l_A 462 EG-N-LWLGTL-SALVRFNPEQRSFTTIEKE-KDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFK 523 (795)
T ss_dssp SS-C-EEEEES-SCEEEEETTTTEEEECCBC-TTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEE
T ss_pred CC-C-EEEEec-CceeEEeCCCCeEEEcccc-ccccccCCceEEEEEECCCCCEEEEe-C-CceEEEe
Confidence 87 3 444444 4588898776432110000 00001124678999999998755544 3 4566554
No 263
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.58 E-value=9e-05 Score=59.38 Aligned_cols=233 Identities=6% Similarity=-0.011 Sum_probs=126.1
Q ss_pred CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC---C-eEEEEeccCceee
Q 035558 4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID---T-TCTIWDIEREAVD 78 (253)
Q Consensus 4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g-~i~vwd~~~~~~~ 78 (253)
++.++++-.. .|+.++...+ ... .+.... .....++++ ++++++++-... . .+...+...+...
T Consensus 152 ~g~Lyv~D~~~~I~~id~~~g----~v~-~~~~~~-----~~P~giavd-~dG~lyVad~~~~~~~~gv~~~~~~~~~~~ 220 (433)
T 4hw6_A 152 YDDLYWVGQRDAFRHVDFVNQ----YVD-IKTTNI-----GQCADVNFT-LNGDMVVVDDQSSDTNTGIYLFTRASGFTE 220 (433)
T ss_dssp TCEEEEECBTSCEEEEETTTT----EEE-EECCCC-----SCEEEEEEC-TTCCEEEEECCSCTTSEEEEEECGGGTTCC
T ss_pred CCEEEEEeCCCCEEEEECCCC----EEE-EeecCC-----CCccEEEEC-CCCCEEEEcCCCCcccceEEEEECCCCeec
Confidence 4666666554 8888888664 333 332222 457899999 788855444321 1 2333333222110
Q ss_pred -eeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558 79 -TQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV 155 (253)
Q Consensus 79 -~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i 155 (253)
..+. .-.....++++ ++.++++-..++.|+.+|..++.....+..... ...-..++|+| +++.|+++......|
T Consensus 221 ~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~-~~~~~~ia~dp-dG~~LYvad~~~~~I 297 (433)
T 4hw6_A 221 RLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT-KGSNFHIVWHP-TGDWAYIIYNGKHCI 297 (433)
T ss_dssp EEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC-CSSCEEEEECT-TSSEEEEEETTTTEE
T ss_pred ccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC-CCCcccEEEeC-CCCEEEEEeCCCCEE
Confidence 1111 12334567777 445555555678899999886653122222211 12334699999 888777766655559
Q ss_pred EEEECCCCCCC---eeeeccc---------------ccceeEEEE---------ecCCCCeEEEecCCCcEEEEeccCCC
Q 035558 156 VVLDIRFPTLP---VVELQRH---------------QASVNAIAW---------APHSSCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 156 ~~~d~~~~~~~---~~~~~~~---------------~~~i~~~~~---------~~~~~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
..++....... ...+.+. -.....+++ .+++ .++++-...+.|+.++.. +.
T Consensus 298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g-~lyvaD~~n~~I~~~~~~-G~ 375 (433)
T 4hw6_A 298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY-DFYFCDRDSHTVRVLTPE-GR 375 (433)
T ss_dssp EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE-EEEEEETTTTEEEEECTT-SE
T ss_pred EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC-cEEEEECCCCEEEEECCC-CC
Confidence 99886532110 1111111 123567899 6666 466676777889998752 22
Q ss_pred CCCCCCCCC----e------eeccCCCceeEEEEc-CCCCceEEEEcCCcEEEEE
Q 035558 209 QPVEGGLDP----I------LAYTAGAEIEQLQWS-SSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 209 ~~~~~~~~~----~------~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~i~vw~ 252 (253)
......... - .....-.....|++. +++..+++=..++.|+.++
T Consensus 376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 430 (433)
T 4hw6_A 376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA 430 (433)
T ss_dssp EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence 110000000 0 000112347899999 6676555666677787765
No 264
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.54 E-value=1.7e-06 Score=73.52 Aligned_cols=179 Identities=13% Similarity=0.012 Sum_probs=102.5
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC----ceeeeeeecccccEE
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER----EAVDTQLIAHDKEVY 89 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~ 89 (253)
.|+..++... .....+... ..+..++|++..+.++++-...+.|+.+++.. ......+...-....
T Consensus 387 ~I~~id~~~~----~~~~~~~~~------~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~ 456 (699)
T 1n7d_A 387 EVRKMTLDRS----EYTSLIPNL------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 456 (699)
T ss_dssp C-CEECTTSC----CEECCSCCC------TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CC
T ss_pred ceEEEeCCCC----cceeeeccC------cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcc
Confidence 7777777664 333333222 34568899833444444444567899999875 222222221122345
Q ss_pred EEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC-CCeEEEEECCCCCCC
Q 035558 90 DIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMD-SAKVVVLDIRFPTLP 166 (253)
Q Consensus 90 ~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~-~~~i~~~d~~~~~~~ 166 (253)
.|++. .++++++-...+.|.++++........+. ........++++|..+.++++-... +. |..+++.....
T Consensus 457 glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~---~~~~~P~giavDp~~g~ly~td~~~~~~-I~~~~~dG~~~- 531 (699)
T 1n7d_A 457 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---EQGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLNGVDI- 531 (699)
T ss_dssp CEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECC---CSSCCCCCEECCSSSSCCEECCCSSSCC-EEBCCSSSCCC-
T ss_pred eEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEe---CCCCCcceEEEccCCCcEEEcccCCCCe-EEEEeCCCCCe-
Confidence 67776 45555665667889999987654222221 1112456789998444444443222 45 88887764332
Q ss_pred eeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCC
Q 035558 167 VVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM 207 (253)
Q Consensus 167 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 207 (253)
...+...-...+.|+|+|++.+++++-+..+.|..+++...
T Consensus 532 ~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 532 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 572 (699)
T ss_dssp CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence 11112223456789999987556667677889999998653
No 265
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.53 E-value=7.1e-05 Score=59.94 Aligned_cols=231 Identities=9% Similarity=0.061 Sum_probs=122.3
Q ss_pred CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC-CC----eEEEEeccCcee
Q 035558 4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI-DT----TCTIWDIEREAV 77 (253)
Q Consensus 4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg----~i~vwd~~~~~~ 77 (253)
++.++++-.. .|+.+|+..+ .. ..+.... .....++|+ ++++.|+.+.. ++ .+.+.+.. +..
T Consensus 149 ~g~Lyv~d~~~~I~~id~~~~----~v-~~~~~~~-----~~P~~ia~d-~~G~~lyvad~~~~~~~~~v~~~~~~-g~~ 216 (430)
T 3tc9_A 149 HNHLYLVGEQHPTRLIDFEKE----YV-STVYSGL-----SKVRTICWT-HEADSMIITNDQNNNDRPNNYILTRE-SGF 216 (430)
T ss_dssp EEEEEEEEBTEEEEEEETTTT----EE-EEEECCC-----SCEEEEEEC-TTSSEEEEEECCSCTTSEEEEEEEGG-GTS
T ss_pred CCeEEEEeCCCcEEEEECCCC----EE-EEEecCC-----CCcceEEEe-CCCCEEEEEeCCCCcccceEEEEeCC-Cce
Confidence 4555555554 7888888763 32 2222222 457899999 78885555543 22 34434433 322
Q ss_pred e--eeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC
Q 035558 78 D--TQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA 153 (253)
Q Consensus 78 ~--~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 153 (253)
. ..+.. ......++++ ++.++++-..++.|..++........ +..... ......++|+| ++++|+++.....
T Consensus 217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~-~~~~~~-~~~P~gia~~p-dG~~lyv~d~~~~ 292 (430)
T 3tc9_A 217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP-LFTIQD-SGWEFHIQFHP-SGNYAYIVVVNQH 292 (430)
T ss_dssp CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE-EEECSS-SSCCEEEEECT-TSSEEEEEETTTT
T ss_pred eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EEEcCC-CCcceeEEEcC-CCCEEEEEECCCC
Confidence 1 22221 2335667787 45555565677889999988654212 222111 23567899999 8887777666555
Q ss_pred eEEEEECCCCCCC---eeeeccc---------------cccee-EEEEe--------cCCCCeEEEecCCCcEEEEeccC
Q 035558 154 KVVVLDIRFPTLP---VVELQRH---------------QASVN-AIAWA--------PHSSCHICTAGDDSQALIWDLSS 206 (253)
Q Consensus 154 ~i~~~d~~~~~~~---~~~~~~~---------------~~~i~-~~~~~--------~~~~~~l~~~~~dg~i~iwd~~~ 206 (253)
.|..++....... ...+.+. -.... .++.. +++ .++++-...+.|+.++. .
T Consensus 293 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g-~lyvaD~~n~~I~~i~~-~ 370 (430)
T 3tc9_A 293 YILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY-DFYFCDRENHCIRILTP-Q 370 (430)
T ss_dssp EEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE-EEEEEEGGGTEEEEECT-T
T ss_pred EEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCC-eEEEEECCCcEEEEECC-C
Confidence 5999876532110 1111110 01123 45553 334 35555556678888873 2
Q ss_pred CCCCCCCCC----CCe------eeccCCCceeEEEEcCC-CCceEEEEcCCcEEEEE
Q 035558 207 MGQPVEGGL----DPI------LAYTAGAEIEQLQWSSS-QPDWVAIAFSTKLQILR 252 (253)
Q Consensus 207 ~~~~~~~~~----~~~------~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~i~vw~ 252 (253)
+........ ..- .....-.....|++.|+ +..+++-..++.|+.++
T Consensus 371 G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 427 (430)
T 3tc9_A 371 GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIG 427 (430)
T ss_dssp SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEc
Confidence 221100000 000 00001235789999994 65455555667777664
No 266
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.53 E-value=8.4e-05 Score=54.85 Aligned_cols=190 Identities=8% Similarity=0.070 Sum_probs=110.3
Q ss_pred CCCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee--
Q 035558 2 CQKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV-- 77 (253)
Q Consensus 2 p~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-- 77 (253)
|+++.++++..+ .|...|.. + +..+.+.-... ...-.|++. .++.++++.-.++.+.++++.....
T Consensus 36 ~~~~~L~aV~d~~~~I~~ld~~-g----~v~~~i~l~g~----~D~EGIa~~-~~g~~~vs~E~~~~l~~~~v~~~~~i~ 105 (255)
T 3qqz_A 36 AQSNTLFSTINKPAAIVEMTTN-G----DLIRTIPLDFV----KDLETIEYI-GDNQFVISDERDYAIYVISLTPNSEVK 105 (255)
T ss_dssp TTTTEEEEEEETTEEEEEEETT-C----CEEEEEECSSC----SSEEEEEEC-STTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred CCCCEEEEEECCCCeEEEEeCC-C----CEEEEEecCCC----CChHHeEEe-CCCEEEEEECCCCcEEEEEcCCCCeee
Confidence 555656665554 77778877 3 55555422110 346688887 6777666655677898888765432
Q ss_pred -eeeee------cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCC---CCCeeeeec----cCCCCCCeeEEEeeCCCC
Q 035558 78 -DTQLI------AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRD---KEHSTIIYE----SSEPDTPLVRLGWNKQDP 142 (253)
Q Consensus 78 -~~~~~------~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~----~~~~~~~i~~~~~~~~~~ 142 (253)
+.... ..+.....|+|. .++.|.++.+.....+|.++. ......... .......+..++++|.++
T Consensus 106 ~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg 185 (255)
T 3qqz_A 106 ILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKN 185 (255)
T ss_dssp EEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTT
T ss_pred eeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCC
Confidence 12221 123456899999 776666666665666666642 111122211 112233678999999666
Q ss_pred CEEEEEEeCCCeEEEEECCCCCCCeeeecc-c------ccceeEEEEecCCCCeEEEecCCCcEEEEec
Q 035558 143 RYMATIIMDSAKVVVLDIRFPTLPVVELQR-H------QASVNAIAWAPHSSCHICTAGDDSQALIWDL 204 (253)
Q Consensus 143 ~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~------~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~ 204 (253)
.+++.+.... .+..+|....-.....+.. . -.....|+|.++| + |+..++-+.++.|.-
T Consensus 186 ~lliLS~~s~-~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G-~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 186 TLLVLSHESR-ALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG-N-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp EEEEEETTTT-EEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTC-C-EEEEETTTEEEEEEC
T ss_pred eEEEEECCCC-eEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCC-C-EEEEcCCceEEEEEe
Confidence 6666555444 4999997743211222221 1 1256789999998 4 555577776666643
No 267
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.52 E-value=0.0003 Score=59.11 Aligned_cols=223 Identities=10% Similarity=-0.010 Sum_probs=131.5
Q ss_pred CCceEEeecCcEEEEEccCCccccceeee--ecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 4 KPDLLATSSDFLRVWRISDEDRRVELKSL--LNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 4 ~~~~l~~~~~~v~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
..-+|.+....|+..+++.. ..... +.+- ..+..++|++.++..+++-..++.|+.+++........+
T Consensus 6 ~~~Ll~s~~~~I~~i~l~~~----~~~~~~~~~~~------~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~ 75 (628)
T 4a0p_A 6 EAFLLFSRRADIRRISLETN----NNNVAIPLTGV------KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV 75 (628)
T ss_dssp CCEEEEEETTEEEEEESSCT----TCEEECCCCSC------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CcEEEEEeCCcEEEEECCCC----CcceEEEcCCC------CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE
Confidence 44455543349999999864 22222 2222 357799999555666666667889999998754433333
Q ss_pred ecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC-CCeEEEE
Q 035558 82 IAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMD-SAKVVVL 158 (253)
Q Consensus 82 ~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~-~~~i~~~ 158 (253)
.........|++. .++++.+-...+.|.+.++......... . ..-.....++++|..+ .|...... ...|...
T Consensus 76 ~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~-~--~~l~~P~~iavdp~~G-~lY~tD~g~~~~I~r~ 151 (628)
T 4a0p_A 76 EFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLV-W--KDLDSPRALALDPAEG-FMYWTEWGGKPKIDRA 151 (628)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEE-C--SSCCCEEEEEEETTTT-EEEEEECSSSCEEEEE
T ss_pred eCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEE-e--CCCCCcccEEEccCCC-eEEEeCCCCCCEEEEE
Confidence 3222346677877 4556666667788999999765432222 1 1223578999999444 45444422 2338888
Q ss_pred ECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCc
Q 035558 159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPD 238 (253)
Q Consensus 159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 238 (253)
++.... ...+...-...+.+++++++.++.++-...+.|..+|+...... ..........++++.. +..
T Consensus 152 ~~dG~~--~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~--------v~~~~l~~P~glav~~-~~l 220 (628)
T 4a0p_A 152 AMDGSE--RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE--------VIADDLPHPFGLTQYQ-DYI 220 (628)
T ss_dssp ETTSCS--CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--------EEEECCSCEEEEEEET-TEE
T ss_pred eCCCCc--eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE--------EeeccCCCceEEEEEC-CEE
Confidence 876543 23333334567899999987555566667789999998764321 2223334455777654 322
Q ss_pred eEEEEcCCcEEEE
Q 035558 239 WVAIAFSTKLQIL 251 (253)
Q Consensus 239 ~~~~~~~~~i~vw 251 (253)
+++-...+.|...
T Consensus 221 y~tD~~~~~I~~~ 233 (628)
T 4a0p_A 221 YWTDWSRRSIERA 233 (628)
T ss_dssp EEEETTTTEEEEE
T ss_pred EEecCCCCEEEEE
Confidence 3333334444443
No 268
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.51 E-value=1.2e-05 Score=68.18 Aligned_cols=158 Identities=8% Similarity=0.001 Sum_probs=98.3
Q ss_pred EEEecCCCCCEEEEEeCCC-------------------eEEEEeccCceeeeeeec--cc-------ccEEEEEec-CCC
Q 035558 47 SFDWNEAEPRRIGTSSIDT-------------------TCTIWDIEREAVDTQLIA--HD-------KEVYDIAWG-GVG 97 (253)
Q Consensus 47 ~~~~~~~~~~~l~~~~~dg-------------------~i~vwd~~~~~~~~~~~~--~~-------~~v~~~~~~-~~~ 97 (253)
.+++. +...+++.++.++ .|..+|.++++.+..++. |. .++...... +++
T Consensus 234 ~~a~d-~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~ 312 (668)
T 1kv9_A 234 SMAYD-PELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK 312 (668)
T ss_dssp CEEEE-TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceEEc-CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence 46777 6667888887766 399999999998877763 21 222222222 443
Q ss_pred ---eEEEEeCCCcEEEEEcCCCCCeeeeeccC---------CCCC------------------------CeeEEEeeCCC
Q 035558 98 ---VFASVSADGSVRVFDLRDKEHSTIIYESS---------EPDT------------------------PLVRLGWNKQD 141 (253)
Q Consensus 98 ---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~~~------------------------~i~~~~~~~~~ 141 (253)
.++.++.+|.++++|.++++......... .... .-..++++| +
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp-~ 391 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP-G 391 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET-T
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECC-C
Confidence 68899999999999999987542111100 0000 011267787 4
Q ss_pred CCEEEEEE------------------------------------eCCCeEEEEECCCCCCCeeeecccccceeEEEEecC
Q 035558 142 PRYMATII------------------------------------MDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPH 185 (253)
Q Consensus 142 ~~~l~~~~------------------------------------~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~ 185 (253)
..++++.. .++. |..||+.+++. +.+...+ .+.....+...
T Consensus 392 ~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~-l~A~D~~tG~~-~W~~~~~-~~~~~~~~~t~ 468 (668)
T 1kv9_A 392 TGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGA-LLAWDPVKQKA-AWKVPYP-THWNGGTLSTA 468 (668)
T ss_dssp TTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEE-EEEEETTTTEE-EEEEEES-SSCCCCEEEET
T ss_pred CCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccce-EEEEeCCCCcE-EEEccCC-CCCcCceeEeC
Confidence 44444321 1244 89999988763 4444322 23333344455
Q ss_pred CCCeEEEecCCCcEEEEeccCCCCC
Q 035558 186 SSCHICTAGDDSQALIWDLSSMGQP 210 (253)
Q Consensus 186 ~~~~l~~~~~dg~i~iwd~~~~~~~ 210 (253)
+ .+++.++.|+.+++||.++++..
T Consensus 469 g-g~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 469 G-NLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp T-TEEEEECTTSEEEEEETTTCCEE
T ss_pred C-CEEEEECCcccchhhhhhcChhh
Confidence 6 48888999999999999988744
No 269
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.50 E-value=8.8e-05 Score=63.77 Aligned_cols=193 Identities=13% Similarity=0.040 Sum_probs=109.5
Q ss_pred CeeEEEecCCCCCEEEEEe-CCC----eEEEEeccCc-eeeee-eecccccEEEEEec-CCCeEEEEeCC-----CcEEE
Q 035558 44 PLTSFDWNEAEPRRIGTSS-IDT----TCTIWDIERE-AVDTQ-LIAHDKEVYDIAWG-GVGVFASVSAD-----GSVRV 110 (253)
Q Consensus 44 ~v~~~~~~~~~~~~l~~~~-~dg----~i~vwd~~~~-~~~~~-~~~~~~~v~~~~~~-~~~~l~~~~~d-----g~i~i 110 (253)
.+...+||||++++|+-+. .+| .|+++|+.++ +.+.. +. .....++|+ +++.|+....| ..|..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 5678899856788776443 333 5999999988 63221 21 123468899 88877776665 25888
Q ss_pred EEcCCCCCe-eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC--CeEEEEECCCCCCCe--eee-cccccceeEEEEec
Q 035558 111 FDLRDKEHS-TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS--AKVVVLDIRFPTLPV--VEL-QRHQASVNAIAWAP 184 (253)
Q Consensus 111 ~d~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~--~~i~~~d~~~~~~~~--~~~-~~~~~~i~~~~~~~ 184 (253)
+++.++... ..+..... ......+.|+| ++++|+.....+ ..|.++|+.+..... ..+ ........++.|+.
T Consensus 252 ~~lgt~~~~~~lv~~~~~-~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~ 329 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHN-PLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG 329 (751)
T ss_dssp EETTSCGGGCEEEEECCC-TTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET
T ss_pred EECCCCchhcEEEEecCC-CceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee
Confidence 888776422 23333222 22566789999 888877665432 348888988753222 333 23344556666554
Q ss_pred CCCCeEEEecCC--C--cEEEEeccCCCCCCCCCCCCee-eccCCC--ceeEEEEcCCCCceE-EEEcCCcEEEE
Q 035558 185 HSSCHICTAGDD--S--QALIWDLSSMGQPVEGGLDPIL-AYTAGA--EIEQLQWSSSQPDWV-AIAFSTKLQIL 251 (253)
Q Consensus 185 ~~~~~l~~~~~d--g--~i~iwd~~~~~~~~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~~~-~~~~~~~i~vw 251 (253)
.+ .+++....+ + .|..+++.+..... . +..+.. .+..+.+. +..++ +...++..+++
T Consensus 330 g~-~l~~~t~~~~a~~~~L~~~d~~~~~~~~-------~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 330 TS-HLVILTNEGGAVNHKLLIAPRGQPSDWS-------HVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp TT-EEEEEECTTTCTTCEEEEEETTSTTCCC-------CEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEE
T ss_pred CC-EEEEEeCCCCCCCcEEEEEcCCCcccce-------eeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEE
Confidence 43 455555544 3 55555655321111 2 233332 45566665 33444 55556655544
No 270
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.50 E-value=0.00043 Score=59.92 Aligned_cols=229 Identities=10% Similarity=0.047 Sum_probs=133.4
Q ss_pred CceEEeecC-cEEEEEccCCccccceeeeecCC--CCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGN--KNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
+.+.++..+ .+.+|+..+. +........ ........|.++... .++.+ ..|+.+| |.+||..+++.....
T Consensus 226 g~lwigt~~~Gl~~~~~~~~----~~~~~~~~~~~~~~l~~~~i~~i~~d-~~g~l-Wigt~~G-l~~~~~~~~~~~~~~ 298 (795)
T 4a2l_A 226 TRIWVATEGAGLFLINPKTK----EIKNYLHSPSNPKSISSNYIRSLAMD-SQNRL-WIGTFND-LNIYHEGTDSFASYS 298 (795)
T ss_dssp TEEEEEEBSSCEEEEETTTT----EEEEECCCTTCTTSCSCSBEEEEEEC-TTSCE-EEEESSC-EEEEETTTTEEEEEC
T ss_pred CCEEEEECCCCeEEEeCCCC----eEEEeecCCCCccccCCCeEEEEEEc-CCCCE-EEEeCCh-hheEcCCCCeEEEEe
Confidence 445555444 7888887663 222111111 000011568899887 56654 4555554 888998776533221
Q ss_pred e-------cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeec---cCCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558 82 I-------AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYE---SSEPDTPLVRLGWNKQDPRYMATIIM 150 (253)
Q Consensus 82 ~-------~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~~~ 150 (253)
. -....|.++... ++. +-.|+.++-|..++..+......... .......|.++...+ +++ |.+|+.
T Consensus 299 ~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g~-lWiGt~ 375 (795)
T 4a2l_A 299 SNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DKN-LWIGTN 375 (795)
T ss_dssp CCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TSC-EEEEES
T ss_pred cCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CCC-EEEEEC
Confidence 1 123578898888 555 45566667788888765542211111 011233688888876 555 445677
Q ss_pred CCCeEEEEECCCCCCCeeeec---------ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeec
Q 035558 151 DSAKVVVLDIRFPTLPVVELQ---------RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAY 221 (253)
Q Consensus 151 ~~~~i~~~d~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 221 (253)
+++ |..||..+.. ...+. .....|.++...+++ ++|..|+.++-|..||..++.........+ .
T Consensus 376 ~~G-l~~~~~~~~~--~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~---~ 448 (795)
T 4a2l_A 376 DGG-LNLYNPITQR--FTSYTLQEDESARGIGSNNIKAVYVDEKK-SLVYIGTHAGGLSILHRNSGQVENFNQRNS---Q 448 (795)
T ss_dssp SSC-EEEECTTTCC--EEEECCC------CCSCSCEEEEEEETTT-TEEEEEETTTEEEEEETTTCCEEEECTTTS---C
T ss_pred CCC-eEEEcCCCCc--EEEEecCCCCcccCCCCccEEEEEEcCCC-CEEEEEeCcCceeEEeCCCCcEEEeecCCC---C
Confidence 777 9999987643 22221 123568899988887 447778887889999987754211000000 0
Q ss_pred cCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 222 TAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 222 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
.....|.++...+++..+++ +. +.+.+|+
T Consensus 449 l~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~ 477 (795)
T 4a2l_A 449 LVNENVYAILPDGEGNLWLG-TL-SALVRFN 477 (795)
T ss_dssp CSCSCEEEEEECSSSCEEEE-ES-SCEEEEE
T ss_pred cCCCeeEEEEECCCCCEEEE-ec-CceeEEe
Confidence 23467899999888874444 44 4566654
No 271
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.49 E-value=8.9e-05 Score=61.62 Aligned_cols=139 Identities=8% Similarity=-0.038 Sum_probs=84.3
Q ss_pred eEEEEeccCceeeeeeecc----------cccEEEEEec-CC---CeEEEEeCCCcEEEEEcCCCCCeeeeeccCCC---
Q 035558 66 TCTIWDIEREAVDTQLIAH----------DKEVYDIAWG-GV---GVFASVSADGSVRVFDLRDKEHSTIIYESSEP--- 128 (253)
Q Consensus 66 ~i~vwd~~~~~~~~~~~~~----------~~~v~~~~~~-~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--- 128 (253)
.|..+|.++++.+..++.. ..++. +... ++ ..++.++.+|.+.++|..+++..-........
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence 5999999999987776521 12222 2222 45 35778889999999999988743322211100
Q ss_pred -------CCCe--------------------------eEEEeeCCCCCEEEEEEe-------------------------
Q 035558 129 -------DTPL--------------------------VRLGWNKQDPRYMATIIM------------------------- 150 (253)
Q Consensus 129 -------~~~i--------------------------~~~~~~~~~~~~l~~~~~------------------------- 150 (253)
..++ ..++++| +..++++...
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 430 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDP-ESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECC-CCCEEEEEchhccccccccccccccCCccccccce
Confidence 0011 2467888 5555555432
Q ss_pred ------------CCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCC
Q 035558 151 ------------DSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQP 210 (253)
Q Consensus 151 ------------~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 210 (253)
++. |..||+.+++. +.++.. ...+.+..+...+ .+++.++.||.|+.||.++++..
T Consensus 431 ~~~~~~~~~~~~~g~-l~a~D~~tG~~-~W~~~~-~~~~~~~~~~t~g-g~v~~g~~dg~l~a~D~~tG~~l 498 (571)
T 2ad6_A 431 MYPGPNGPTKKEMGQ-IRAFDLTTGKA-KWTKWE-KFAAWGGTLYTKG-GLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp EEECTTSTTSCCCEE-EEEECTTTCCE-EEEEEE-SSCCCSBCEEETT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred eccCccccCCCCCCe-EEEEECCCCCE-EEEecC-CCCccceeEEECC-CEEEEEcCCCeEEEEECCCCCEE
Confidence 244 88999988663 444432 2223333333344 37778999999999999998754
No 272
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.47 E-value=2.9e-05 Score=65.75 Aligned_cols=150 Identities=9% Similarity=0.003 Sum_probs=84.9
Q ss_pred CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeE-EEecCCCCCEEEEEeC------CCeEEEEeccCce
Q 035558 5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTS-FDWNEAEPRRIGTSSI------DTTCTIWDIEREA 76 (253)
Q Consensus 5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~ 76 (253)
+.+++.+.+ .|..+|..++ +.+..++...... ...+.+ -.. .+..++.+.. +|.|+.+|.++++
T Consensus 118 ~~v~v~~~dg~l~alD~~tG----~~~W~~~~~~~~~-~~~~~~~P~v---~~~~v~vg~~~~~~~~~g~v~a~D~~tG~ 189 (668)
T 1kv9_A 118 DKVYVGTLDGRLIALDAKTG----KAIWSQQTTDPAK-PYSITGAPRV---VKGKVIIGNGGAEYGVRGFVSAYDADTGK 189 (668)
T ss_dssp TEEEEECTTSEEEEEETTTC----CEEEEEECSCTTS-SCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred CEEEEEcCCCEEEEEECCCC----CEeeeeccCCCCC-cceecCCCEE---ECCEEEEeCCCCCcCCCCEEEEEECCCCc
Confidence 444444446 9999999887 5555544321000 011111 011 1334555543 5899999999999
Q ss_pred eeeeeeccc---c----------------------------cEEEEEec-CCCeEEEEeCCC------------------
Q 035558 77 VDTQLIAHD---K----------------------------EVYDIAWG-GVGVFASVSADG------------------ 106 (253)
Q Consensus 77 ~~~~~~~~~---~----------------------------~v~~~~~~-~~~~l~~~~~dg------------------ 106 (253)
.+..+.... . ....+++. ..++++.+..++
T Consensus 190 ~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~ 269 (668)
T 1kv9_A 190 LAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYL 269 (668)
T ss_dssp EEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred EEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceee
Confidence 877664210 0 01135666 567888887766
Q ss_pred -cEEEEEcCCCCCeeeeeccCCCC-------CCeeEEEeeCCCCC---EEEEEEeCCCeEEEEECCCCCC
Q 035558 107 -SVRVFDLRDKEHSTIIYESSEPD-------TPLVRLGWNKQDPR---YMATIIMDSAKVVVLDIRFPTL 165 (253)
Q Consensus 107 -~i~i~d~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~---~l~~~~~~~~~i~~~d~~~~~~ 165 (253)
.|..+|.++++..-..... .+. .+.....+.. +++ .+++++.+|. ++++|.++++.
T Consensus 270 ~~v~AlD~~tG~~~W~~~~~-~~~~wd~~~~~~~~~~d~~~-~G~~~~~v~~~~~~G~-l~~lD~~tG~~ 336 (668)
T 1kv9_A 270 SSILAIRPDTGKLAWHYQVT-PGDSWDFTATQQITLAELNI-DGKPRKVLMQAPKNGF-FYVLDRTNGKL 336 (668)
T ss_dssp TEEEEECTTTCCEEEEEESS-TTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSE-EEEEETTTCCE
T ss_pred eeEEEEcCCCCceeeEeecC-CCccccccCCCCcEEEEecc-CCcEEEEEEEECCCCE-EEEEECCCCCE
Confidence 3999999998743322221 111 1222222222 443 5777777777 99999988763
No 273
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.43 E-value=0.00038 Score=56.33 Aligned_cols=237 Identities=9% Similarity=-0.012 Sum_probs=128.6
Q ss_pred CCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEe-------cCCCCCEEEEEeCCC-------eE
Q 035558 4 KPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDW-------NEAEPRRIGTSSIDT-------TC 67 (253)
Q Consensus 4 ~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~~l~~~~~dg-------~i 67 (253)
.++++++... .|++.|+..+ .......... ..+ .....++| + ++++.|+.+...+ .|
T Consensus 151 ~~~Lyv~~~~~~~i~~ID~~~~----~v~~l~~~~~-~~~-~~p~~ia~~~~~~~~d-~~G~~lyvad~~~~~~~~~~~V 223 (496)
T 3kya_A 151 KDHLYICYDGHKAIQLIDLKNR----MLSSPLNINT-IPT-NRIRSIAFNKKIEGYA-DEAEYMIVAIDYDGKGDESPSV 223 (496)
T ss_dssp EEEEEEEEETEEEEEEEETTTT----EEEEEECCTT-SSC-SBEEEEEECCCBTTTB-CTTCEEEEEECCCTTGGGEEEE
T ss_pred CCEEEEEECCCCeEEEEECCCC----EEEEEEccCc-ccc-CCCcEEEEeecccccC-CCCCEEEEEeCCCCCcccCceE
Confidence 4555555554 7888888774 3332222211 011 45789999 8 7888666665543 26
Q ss_pred EEEeccC-ceee-----eeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcC-------CCCC-----------eee
Q 035558 68 TIWDIER-EAVD-----TQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLR-------DKEH-----------STI 121 (253)
Q Consensus 68 ~vwd~~~-~~~~-----~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~-------~~~~-----------~~~ 121 (253)
.+.+... +... ..+... .....++.+ ++.++++-..++.|..+|+. ++.. ...
T Consensus 224 ~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~ 302 (496)
T 3kya_A 224 YIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQ 302 (496)
T ss_dssp EEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEE
T ss_pred EEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccce
Confidence 6665443 2221 122211 233566777 45566666778889999997 4543 112
Q ss_pred eeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCe---eeeccc---c------------ccee-EEEE
Q 035558 122 IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPV---VELQRH---Q------------ASVN-AIAW 182 (253)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~---~~~~~~---~------------~~i~-~~~~ 182 (253)
+... ........++|+| +++.|+.+......|+.++.......+ ..+.+. . .... .++.
T Consensus 303 l~~~-~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~v 380 (496)
T 3kya_A 303 LFTI-ADPSWEFQIFIHP-TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFV 380 (496)
T ss_dssp EEEC-SSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEE
T ss_pred eEec-CCCCCceEEEEcC-CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEE
Confidence 2222 1223567899999 888777776666569887654322111 111111 0 1234 4555
Q ss_pred e-------cCCCCeEEEecCCCcEEEEeccCCCCCCCCCCC--------------Ce--eeccCCCceeEEEEcCC-CCc
Q 035558 183 A-------PHSSCHICTAGDDSQALIWDLSSMGQPVEGGLD--------------PI--LAYTAGAEIEQLQWSSS-QPD 238 (253)
Q Consensus 183 ~-------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------------~~--~~~~~~~~v~~~~~~~~-~~~ 238 (253)
. +++ .++++-....+|+.++. .+......... .- .....-.....|++.++ +..
T Consensus 381 d~~~~~~~~~g-~lyVaD~~N~rIr~i~~-~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~l 458 (496)
T 3kya_A 381 KNPDYTGEEEY-DFYFVDRLNFCVRKVTP-EGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMF 458 (496)
T ss_dssp ECTTCCSSCCE-EEEEEEGGGTEEEEECT-TCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEE
T ss_pred ccccccccCCC-eEEEEECCCCEEEEEeC-CCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEE
Confidence 4 455 46666667889999983 33211000000 00 00011245789999997 765
Q ss_pred eEEEEcCCcEEEEE
Q 035558 239 WVAIAFSTKLQILR 252 (253)
Q Consensus 239 ~~~~~~~~~i~vw~ 252 (253)
+++=..++.||.+.
T Consensus 459 yVaD~~N~rIrki~ 472 (496)
T 3kya_A 459 YVHDQVGHTIRTIS 472 (496)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEEeCCCCEEEEEE
Confidence 55666677788765
No 274
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.43 E-value=0.00038 Score=58.00 Aligned_cols=166 Identities=12% Similarity=0.062 Sum_probs=94.1
Q ss_pred CeEEEEeccCceeeeeeec--cc--------ccEEEEEe--cCC---CeEEEEeCCCcEEEEEcCCCCCeeeeeccCC--
Q 035558 65 TTCTIWDIEREAVDTQLIA--HD--------KEVYDIAW--GGV---GVFASVSADGSVRVFDLRDKEHSTIIYESSE-- 127 (253)
Q Consensus 65 g~i~vwd~~~~~~~~~~~~--~~--------~~v~~~~~--~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-- 127 (253)
+.|..+|.++++.+..++. |. .++. +.. .++ ..++.++.+|.++++|.++++..-.......
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 5899999999998877653 21 2222 122 134 3788899999999999998874322211100
Q ss_pred -----------------------------CCC-----------CeeEEEeeCCCCCEEEEEEe-----------------
Q 035558 128 -----------------------------PDT-----------PLVRLGWNKQDPRYMATIIM----------------- 150 (253)
Q Consensus 128 -----------------------------~~~-----------~i~~~~~~~~~~~~l~~~~~----------------- 150 (253)
... .-..++++|..+ ++++...
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~g~ 448 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTG-LFYVPANHWKEDYWTEEVSYTKGS 448 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTC-CEEEEEECEEEEEEECCCCCCTTS
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCC-EEEEechhcceeeecccccccCCC
Confidence 000 011356677333 4443321
Q ss_pred ----------------CCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCC
Q 035558 151 ----------------DSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGG 214 (253)
Q Consensus 151 ----------------~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 214 (253)
.+. |..||+.+++. +.+.... .++..-.....+ .+++.++.||.++.||.++++..-
T Consensus 449 ~~~g~~~~~~p~~~~~~G~-l~A~D~~tG~~-~W~~~~~-~~~~~g~~~tag-glvf~g~~dg~l~A~D~~tG~~lW--- 521 (582)
T 1flg_A 449 AYLGMGFRIKRMYDDHVGS-LRAMDPVSGKV-VWEHKEH-LPLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGKELW--- 521 (582)
T ss_dssp CCCCEEEEEEESCSSCSEE-EEEECTTTCCE-EEEEEES-SCCCSCCEEETT-TEEEEECTTSEEEEEETTTCCEEE---
T ss_pred ceeccceeecCCCCCCcce-EEEEECCCCCE-EEEecCC-CCCcccceEeCC-CEEEEECCCCcEEEEECCCCCEEE---
Confidence 344 88899988764 4443322 222221222234 378889999999999999988543
Q ss_pred CCCeeeccCCCceeEEEEcCCCCceEEE
Q 035558 215 LDPILAYTAGAEIEQLQWSSSQPDWVAI 242 (253)
Q Consensus 215 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 242 (253)
....+......-+.|..+|+.+++.
T Consensus 522 ---~~~~~~g~~a~P~~y~~~G~qYv~~ 546 (582)
T 1flg_A 522 ---KFQTGSGIVSPPITWEQDGEQYLGV 546 (582)
T ss_dssp ---EEECSSCCCSCCEEEEETTEEEEEE
T ss_pred ---EecCCCCcccCceEEEECCEEEEEE
Confidence 1111111111225666788766643
No 275
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.41 E-value=3.8e-05 Score=64.97 Aligned_cols=225 Identities=9% Similarity=-0.021 Sum_probs=115.9
Q ss_pred CCceEEeecC-------------cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC-CCeEEE
Q 035558 4 KPDLLATSSD-------------FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI-DTTCTI 69 (253)
Q Consensus 4 ~~~~l~~~~~-------------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~v 69 (253)
++.+++.|+. .+.+||..++ .+..+..+..... ....++++. .++.+++.|+. +..+.+
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~--~w~~~~~~~~~~~----~~~~~~~~~-~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTG--IVSDRTVTVTKHD----MFCPGISMD-GNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTC--CBCCCEEEECSCC----CSSCEEEEC-TTSCEEEECSSSTTCEEE
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCC--cEEeCcccCCCCC----CccccccCC-CCCCEEEeCCCCCCceEE
Confidence 6677777541 4778888774 2333333322110 223346666 78889998884 458999
Q ss_pred EeccCceeee--eeecccccEEEEEec-CCCeEEEEe-CC-----CcEEEEEcCCCCCeeee----eccCCCCCCeeEEE
Q 035558 70 WDIEREAVDT--QLIAHDKEVYDIAWG-GVGVFASVS-AD-----GSVRVFDLRDKEHSTII----YESSEPDTPLVRLG 136 (253)
Q Consensus 70 wd~~~~~~~~--~~~~~~~~v~~~~~~-~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~----~~~~~~~~~i~~~~ 136 (253)
||..+.+-.. .+...... .+++.. ++++++.|+ .+ ..+.+||..+.+-...- ....... . ...
T Consensus 270 yd~~t~~W~~~~~~~~~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~-~--~~~ 345 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD-K--QGL 345 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC-T--TGG
T ss_pred ecCcCCceeECCCCCccccc-cceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc-c--cce
Confidence 9998775332 22211111 334455 788888888 34 56999999876521110 0011100 0 011
Q ss_pred eeCCCCCEEEEEEeCCC--------eEEEEECCCCCCCeeeecccc---------cceeEEEEecCCCCeEEEecCCC--
Q 035558 137 WNKQDPRYMATIIMDSA--------KVVVLDIRFPTLPVVELQRHQ---------ASVNAIAWAPHSSCHICTAGDDS-- 197 (253)
Q Consensus 137 ~~~~~~~~l~~~~~~~~--------~i~~~d~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~~l~~~~~dg-- 197 (253)
+.. ++..++.++.++. .+..||..+... ......+. ..-.++.|...+.++++.|+.++
T Consensus 346 ~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w-~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~ 423 (656)
T 1k3i_A 346 YRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD-VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ 423 (656)
T ss_dssp GTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCE-EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS
T ss_pred eec-CCceEEEECCCCcEEEecCccceeeeecCCcce-eecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCC
Confidence 222 4555566654432 367888876542 22221111 12234455443336888887543
Q ss_pred ---------cEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcC
Q 035558 198 ---------QALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFS 245 (253)
Q Consensus 198 ---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 245 (253)
.|.+||..+........ ........-.+....|+++.++.+|.+
T Consensus 424 ~~~~~~~~~~v~~yd~~~~~W~~~~~----~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 424 DSDATTNAHIITLGEPGTSPNTVFAS----NGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp SSBCCCCEEEEECCSTTSCCEEEECT----TCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CCCcCCcceEEEcCCCCCCCeeEEcc----CCCCCCcccCCeEECCCCCEEEECCcc
Confidence 57777776644211000 000111122344566888877777654
No 276
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.40 E-value=1.5e-05 Score=67.51 Aligned_cols=226 Identities=6% Similarity=-0.082 Sum_probs=116.6
Q ss_pred CCCceEEeec-C--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe-CC-----CeEEEEecc
Q 035558 3 QKPDLLATSS-D--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS-ID-----TTCTIWDIE 73 (253)
Q Consensus 3 ~~~~~l~~~~-~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d-----g~i~vwd~~ 73 (253)
.++.+++.|+ + .+.+||..+. .+.....+.... . -.+++.. +++++++.|+ .+ ..+.+||..
T Consensus 252 ~~g~lyv~GG~~~~~v~~yd~~t~--~W~~~~~~~~~R-----~-~~s~~~~-~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 252 GNGQIVVTGGNDAKKTSLYDSSSD--SWIPGPDMQVAR-----G-YQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp TTSCEEEECSSSTTCEEEEEGGGT--EEEECCCCSSCC-----S-SCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred CCCCEEEeCCCCCCceEEecCcCC--ceeECCCCCccc-----c-ccceEEe-cCCeEEEEeCcccCCcccccceEeCCC
Confidence 3577888877 3 8999999874 222222222111 1 1234444 5788888888 34 468999998
Q ss_pred Cceeeeee----ecccccEEEEEec-CCCeEEEEeCCC---------cEEEEEcCCCCCeeeeeccCC------CCCCee
Q 035558 74 REAVDTQL----IAHDKEVYDIAWG-GVGVFASVSADG---------SVRVFDLRDKEHSTIIYESSE------PDTPLV 133 (253)
Q Consensus 74 ~~~~~~~~----~~~~~~v~~~~~~-~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~------~~~~i~ 133 (253)
+.+-...- ......-....+. ++..++.++.+| .+..||..+............ ....-.
T Consensus 323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~ 402 (656)
T 1k3i_A 323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN 402 (656)
T ss_dssp TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCc
Confidence 76532210 0000000001122 455555555444 467888887653322221111 111234
Q ss_pred EEEeeCCCCCEEEEEEeCC-------C---eEEEEECCCCCCCeeee--ccccc-ceeEEEEecCCCCeEEEecCC----
Q 035558 134 RLGWNKQDPRYMATIIMDS-------A---KVVVLDIRFPTLPVVEL--QRHQA-SVNAIAWAPHSSCHICTAGDD---- 196 (253)
Q Consensus 134 ~~~~~~~~~~~l~~~~~~~-------~---~i~~~d~~~~~~~~~~~--~~~~~-~i~~~~~~~~~~~~l~~~~~d---- 196 (253)
++.|...++++++.|+.++ . .+.+||..+..- .... ..... .-.++...|++ ++++.|+.+
T Consensus 403 av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W-~~~~~~~mp~~R~~~~~~~l~~g-~i~v~GG~~~~~~ 480 (656)
T 1k3i_A 403 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPN-TVFASNGLYFARTFHTSVVLPDG-STFITGGQRRGIP 480 (656)
T ss_dssp EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE-EEECTTCCSSCCBSCEEEECTTS-CEEEECCBSBCCT
T ss_pred eEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCe-eEEccCCCCCCcccCCeEECCCC-CEEEECCcccCcC
Confidence 4555444677888887532 1 377888765431 1111 11111 22345667888 688888854
Q ss_pred -------CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEc
Q 035558 197 -------SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAF 244 (253)
Q Consensus 197 -------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 244 (253)
..+.+||..+..-... ...+.....| ....+.|+++.++.++.
T Consensus 481 ~~~~~~~~~v~~ydp~t~~W~~~-~~~~~~R~~h----s~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 481 FEDSTPVFTPEIYVPEQDTFYKQ-NPNSIVRVYH----SISLLLPDGRVFNGGGG 530 (656)
T ss_dssp TCCCSBCCCCEEEEGGGTEEEEC-CCCSSCCCTT----EEEEECTTSCEEEEECC
T ss_pred cCCCCcccceEEEcCCCCceeec-CCCCCccccc----cHhhcCCCcEEEecCCC
Confidence 5689999877542110 0001111122 23446689886666664
No 277
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.40 E-value=0.00046 Score=57.90 Aligned_cols=188 Identities=8% Similarity=0.013 Sum_probs=107.4
Q ss_pred eEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee-eeecc
Q 035558 7 LLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT-QLIAH 84 (253)
Q Consensus 7 ~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~ 84 (253)
+|.-+.. .|+..+++... .+.......- .....++|++.++..+++=...+.|+.++++...... .+...
T Consensus 11 ~~~~~~~~~I~~i~~~~~~--~~~~~~~~~~------~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~ 82 (619)
T 3s94_A 11 LLLYANRRDLRLVDATNGK--ENATIVVGGL------EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG 82 (619)
T ss_dssp CEEEECSSBEEEECCC-----------CBCC------SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSS
T ss_pred eEEEeccccEEEEeCCCCc--ceEEEEEcCC------CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCC
Confidence 3444444 89998887630 0111122222 3567999994455555555556789999887553222 22222
Q ss_pred cccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC-CCeEEEEECC
Q 035558 85 DKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMD-SAKVVVLDIR 161 (253)
Q Consensus 85 ~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~-~~~i~~~d~~ 161 (253)
-.....|++. .++++.+-...+.|.+.++.......... ..-.....++++|..+ .|..+... ...|...++.
T Consensus 83 ~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~---~~l~~P~~Iavdp~~g-~ly~tD~g~~~~I~r~~~d 158 (619)
T 3s94_A 83 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW---QELDQPRAIALDPSSG-FMYWTDWGEVPKIERAGMD 158 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---SSCSCCCCEEEETTTT-EEEEEECSSSCEEEEEETT
T ss_pred CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEe---CCCCCCceEEEecCCC-eEEEeccCCCCEEEEEECC
Confidence 2567888988 45555666678899999998765332221 1122567899999444 44444432 2237777765
Q ss_pred CCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCC
Q 035558 162 FPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM 207 (253)
Q Consensus 162 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 207 (253)
.... .......-...+.+++++++.++.++-...+.|..+|+...
T Consensus 159 G~~~-~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~ 203 (619)
T 3s94_A 159 GSSR-FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT 203 (619)
T ss_dssp SCSC-EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred CCce-EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence 4332 22222233467899999976555566667788999988654
No 278
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.38 E-value=0.00018 Score=59.93 Aligned_cols=181 Identities=10% Similarity=-0.024 Sum_probs=101.4
Q ss_pred EEecCCCCCEEEEEeCC----------------CeEEEEeccCceeeeeeeccc----------ccEEEEEe--cCC---
Q 035558 48 FDWNEAEPRRIGTSSID----------------TTCTIWDIEREAVDTQLIAHD----------KEVYDIAW--GGV--- 96 (253)
Q Consensus 48 ~~~~~~~~~~l~~~~~d----------------g~i~vwd~~~~~~~~~~~~~~----------~~v~~~~~--~~~--- 96 (253)
.++. +...+++.++.+ +.|..+|.++++.+..++... .++. +.. .++
T Consensus 246 ~a~d-~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~ 323 (599)
T 1w6s_A 246 YAYD-PGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR 323 (599)
T ss_dssp CEEE-TTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred eeEe-CCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence 3455 456677777655 379999999999887766321 1222 222 135
Q ss_pred CeEEEEeCCCcEEEEEcCCCCCeeeeeccC----------CCCCC--------------------------eeEEEeeCC
Q 035558 97 GVFASVSADGSVRVFDLRDKEHSTIIYESS----------EPDTP--------------------------LVRLGWNKQ 140 (253)
Q Consensus 97 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------~~~~~--------------------------i~~~~~~~~ 140 (253)
..++.++.+|.+.++|.++++..-...... ....+ -..++++|
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp- 402 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP- 402 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-
T ss_pred EEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC-
Confidence 467778999999999999987443222110 00001 12456777
Q ss_pred CCCEEEEEE---------------------------------------eCCCeEEEEECCCCCCCeeeecccccceeEEE
Q 035558 141 DPRYMATII---------------------------------------MDSAKVVVLDIRFPTLPVVELQRHQASVNAIA 181 (253)
Q Consensus 141 ~~~~l~~~~---------------------------------------~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~ 181 (253)
+..++++.. ..+. +..||+.+++. +.+... ..+..+-.
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~-l~A~D~~tG~~-~W~~~~-~~~~~~g~ 479 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQ-IKAYNAITGDY-KWEKME-RFAVWGGT 479 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEE-EEEECTTTCCE-EEEEEE-SSCCCSBC
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCe-EEEEECCCCCE-EeEecC-CCCccCcc
Confidence 444444321 1234 88888887653 333321 11222111
Q ss_pred EecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558 182 WAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA 241 (253)
Q Consensus 182 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 241 (253)
....+ .+++.++.||.++.||.++++..- ....+......-+.+..+|+.+++
T Consensus 480 ~~tag-g~vf~gt~dg~l~A~D~~tG~~lW------~~~l~~g~~~~P~~y~~~G~qyv~ 532 (599)
T 1w6s_A 480 MATAG-DLVFYGTLDGYLKARDSDTGDLLW------KFKIPSGAIGYPMTYTHKGTQYVA 532 (599)
T ss_dssp EEETT-TEEEEECTTSEEEEEETTTCCEEE------EEECSSCCCSCCEEEEETTEEEEE
T ss_pred eEecC-CEEEEECCCCeEEEEECCCCCEEE------EeeCCCCcEeccEEEEeCCEEEEE
Confidence 22334 378889999999999999988543 111121111223455667775554
No 279
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.35 E-value=0.00075 Score=58.29 Aligned_cols=195 Identities=9% Similarity=-0.025 Sum_probs=112.8
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee---------ecccccEEEEEec-CCCeEEEEeCCCcEEEEE
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL---------IAHDKEVYDIAWG-GVGVFASVSADGSVRVFD 112 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---------~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d 112 (253)
..|.++... .++. |..|+.++-|..++.......... ......|.++... ++. |..|+.++-|..+|
T Consensus 313 ~~v~~i~~D-~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~ 389 (781)
T 3v9f_A 313 ASARYIFQD-SFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFE 389 (781)
T ss_dssp SCEEEEEEC-SSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEE
T ss_pred CeEEEEEEe-CCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEE
Confidence 578898887 5565 566776667888888755422110 0123568888887 555 45566556688888
Q ss_pred cCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeec---ccccceeEEEEecCCCCe
Q 035558 113 LRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQ---RHQASVNAIAWAPHSSCH 189 (253)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~ 189 (253)
..+................|.++...+ ++.+. +|+.+++ +..+|.++.. ...+. .....|.++...+++ .
T Consensus 390 ~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lW-igt~~~G-l~~~~~~~~~--~~~~~~~~~~~~~v~~i~~d~~g--~ 462 (781)
T 3v9f_A 390 NGKRVAIYNKENRELLSNSVLCSLKDS-EGNLW-FGTYLGN-ISYYNTRLKK--FQIIELEKNELLDVRVFYEDKNK--K 462 (781)
T ss_dssp TTEEEEECC-----CCCSBEEEEEECT-TSCEE-EEETTEE-EEEECSSSCE--EEECCSTTTCCCCEEEEEECTTS--E
T ss_pred CCCCeEEEccCCCCCCCcceEEEEECC-CCCEE-EEeccCC-EEEEcCCCCc--EEEeccCCCCCCeEEEEEECCCC--C
Confidence 765431111111112234788888776 55544 4666566 9999987543 23332 134578899888887 4
Q ss_pred EEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEE
Q 035558 190 ICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQIL 251 (253)
Q Consensus 190 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw 251 (253)
|..|+. +-|..||..+.......... ........|.++...+++..++ ++.++.+..+
T Consensus 463 lwigt~-~Gl~~~~~~~~~~~~~~~~~--~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~ 520 (781)
T 3v9f_A 463 IWIGTH-AGVFVIDLASKKVIHHYDTS--NSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIY 520 (781)
T ss_dssp EEEEET-TEEEEEESSSSSCCEEECTT--TSSCSCSCEEEEEECTTCCEEE-EESSSCEEEE
T ss_pred EEEEEC-CceEEEeCCCCeEEecccCc--ccccccceeEEEEEcCCCCEEE-EEcCCCEEEE
Confidence 555555 56888988765422100000 0001146789999999887444 4443445444
No 280
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.34 E-value=0.00019 Score=57.54 Aligned_cols=156 Identities=11% Similarity=0.077 Sum_probs=92.1
Q ss_pred CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeC-CC----cEEEEEcCCCC
Q 035558 44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSA-DG----SVRVFDLRDKE 117 (253)
Q Consensus 44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-dg----~i~i~d~~~~~ 117 (253)
....++++|.+...|+.+...+.|+.+|++.++..... ........++++ +++.|+.+.. ++ .+..++.....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 45688898313455666655588999999876544333 344568899999 8885555543 22 23334433222
Q ss_pred C-eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEEecC
Q 035558 118 H-STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICTAGD 195 (253)
Q Consensus 118 ~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 195 (253)
. ...+.. ......++++|.++. |+++......|..++...... .+.... .......++|+|++..++++-..
T Consensus 217 ~~~~~l~~----~~~p~giavdp~~g~-lyv~d~~~~~V~~~~~~~~~~~~~~~~~-~~~~P~gia~~pdG~~lyv~d~~ 290 (430)
T 3tc9_A 217 KVITELTK----GQNCNGAETHPINGE-LYFNSWNAGQVFRYDFTTQETTPLFTIQ-DSGWEFHIQFHPSGNYAYIVVVN 290 (430)
T ss_dssp CSEEEEEE----CSSCCCEEECTTTCC-EEEEETTTTEEEEEETTTTEEEEEEECS-SSSCCEEEEECTTSSEEEEEETT
T ss_pred eeeeeecc----CCCceEEEEeCCCCE-EEEEECCCCEEEEEECCCCcEEEEEEcC-CCCcceeEEEcCCCCEEEEEECC
Confidence 1 112221 124567889984455 444444443499999875432 111111 12346789999999425556667
Q ss_pred CCcEEEEeccC
Q 035558 196 DSQALIWDLSS 206 (253)
Q Consensus 196 dg~i~iwd~~~ 206 (253)
.+.|..++...
T Consensus 291 ~~~I~~~~~d~ 301 (430)
T 3tc9_A 291 QHYILRSDYDW 301 (430)
T ss_dssp TTEEEEEEEET
T ss_pred CCEEEEEeCCc
Confidence 88999988764
No 281
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.32 E-value=0.00027 Score=58.75 Aligned_cols=151 Identities=9% Similarity=0.013 Sum_probs=79.9
Q ss_pred CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeE-EEecCCCCCEEEEEeC------CCeEEEEeccCc
Q 035558 4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTS-FDWNEAEPRRIGTSSI------DTTCTIWDIERE 75 (253)
Q Consensus 4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~------dg~i~vwd~~~~ 75 (253)
++.+++...+ .|..+|..++ +.+...+..... ....+.+ -.. .+..++.++. ++.|+.+|.+++
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG----~~~W~~~~~~~~-~~~~~~~~P~v---~~g~v~vg~~~~~~~~~g~v~a~D~~tG 186 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTG----KINWEVEVCDPK-VGSTLTQAPFV---AKDTVLMGCSGAELGVRGAVNAFDLKTG 186 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTC----CEEEEEECCCGG-GTCBCCSCCEE---ETTEEEEECBCGGGTCCCEEEEEETTTC
T ss_pred CCEEEEEeCCCEEEEEECCCC----CEEEEecCCCCC-ccceeccCCEE---ECCEEEEEecCCccCCCCEEEEEECCCC
Confidence 3444444456 8999999887 544443321100 0001111 011 1345555554 789999999999
Q ss_pred eeeeeeeccccc-------------------------------------E-EEEEec-CCCeEEEEeCC-----------
Q 035558 76 AVDTQLIAHDKE-------------------------------------V-YDIAWG-GVGVFASVSAD----------- 105 (253)
Q Consensus 76 ~~~~~~~~~~~~-------------------------------------v-~~~~~~-~~~~l~~~~~d----------- 105 (253)
+.+..+...... + ..+++. ....++.+..+
T Consensus 187 ~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~g 266 (571)
T 2ad6_A 187 ELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPG 266 (571)
T ss_dssp CEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCS
T ss_pred cEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCC
Confidence 987765422110 0 123444 44555555432
Q ss_pred -----CcEEEEEcCCCCCeeeeeccC-------CCCCCeeEEEeeCCCCC---EEEEEEeCCCeEEEEECCCCCC
Q 035558 106 -----GSVRVFDLRDKEHSTIIYESS-------EPDTPLVRLGWNKQDPR---YMATIIMDSAKVVVLDIRFPTL 165 (253)
Q Consensus 106 -----g~i~i~d~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~---~l~~~~~~~~~i~~~d~~~~~~ 165 (253)
+.|..+|.++++..-...... ....++. +...+ +++ .++.++.++. ++++|..+++.
T Consensus 267 d~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~-~G~~~~~v~~~~~~G~-l~~lD~~tG~~ 338 (571)
T 2ad6_A 267 DNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPV-NGKMTPLLSHIDRNGI-LYTLNRENGNL 338 (571)
T ss_dssp CCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEE-TTEEEEEEEEECTTSE-EEEEETTTCCE
T ss_pred CceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eeccc-CCcEEEEEEEeCCCcE-EEEEECCCCCE
Confidence 359999999987432222111 1111221 22223 453 5666777776 99999988653
No 282
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.32 E-value=0.0012 Score=56.89 Aligned_cols=159 Identities=9% Similarity=-0.079 Sum_probs=97.6
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEe-C-CCcEEEEEcCCCCCe
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVS-A-DGSVRVFDLRDKEHS 119 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~-dg~i~i~d~~~~~~~ 119 (253)
.....|++.+..++++++-...+.|.+.++........+...-.....|++. ....|+.+. . .+.|...++......
T Consensus 471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~ 550 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 550 (791)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE
Confidence 3456788874445666666778899999997554333333334567899998 544444443 3 377888888765532
Q ss_pred eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc--cccceeEEEEecCCCCeEEEecCCC
Q 035558 120 TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR--HQASVNAIAWAPHSSCHICTAGDDS 197 (253)
Q Consensus 120 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg 197 (253)
..+. ..-.....|++++ ....|+.+......|..+++..... ...+.. .-....+|++..+ +++++-...+
T Consensus 551 ~lv~---~~l~~P~GLavD~-~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~~~--~lYwtD~~~~ 623 (791)
T 3m0c_C 551 SLVT---ENIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED--KVFWTDIINE 623 (791)
T ss_dssp EEEC---SSCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEETT--EEEEEETTTT
T ss_pred EEEe---CCCCCceEEEEec-CCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEeCC--EEEEEECCCC
Confidence 2222 1223678899998 5556666665555599999865432 222221 1223456666433 4666766778
Q ss_pred cEEEEeccCCC
Q 035558 198 QALIWDLSSMG 208 (253)
Q Consensus 198 ~i~iwd~~~~~ 208 (253)
.|...+..+++
T Consensus 624 ~I~~~dk~tG~ 634 (791)
T 3m0c_C 624 AIFSANRLTGS 634 (791)
T ss_dssp EEEEEETTTCC
T ss_pred EEEEEeCCCCc
Confidence 88888876654
No 283
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.32 E-value=0.00052 Score=52.53 Aligned_cols=193 Identities=6% Similarity=-0.077 Sum_probs=110.0
Q ss_pred CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558 3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 80 (253)
.++.++.+-.. .|..++++...........+.... .....+++.+.+++++++-...+.|.+.++........
T Consensus 40 ~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~-----~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~ 114 (316)
T 1ijq_A 40 ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI-----QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL 114 (316)
T ss_dssp TTTEEEEEETTTTEEEEEEC--------CEEEECSSC-----SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEE
T ss_pred CCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCC-----CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEE
Confidence 34455555443 777777664100001111222111 24568888744556666666778999999875433322
Q ss_pred eecccccEEEEEec-CCCeEEEEeC-C-CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558 81 LIAHDKEVYDIAWG-GVGVFASVSA-D-GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV 157 (253)
Q Consensus 81 ~~~~~~~v~~~~~~-~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~ 157 (253)
+...-.....+++. .+..++.+.. . +.|...++..... ..+... .-.....++++| ++..|+.+......|..
T Consensus 115 ~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~~~~~~--~~~~P~gla~d~-~~~~lY~~D~~~~~I~~ 190 (316)
T 1ijq_A 115 FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTE--NIQWPNGITLDL-LSGRLYWVDSKLHSISS 190 (316)
T ss_dssp EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECS--SCSCEEEEEEET-TTTEEEEEETTTTEEEE
T ss_pred EECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-EEEEEC--CCCCceEEEEec-cCCEEEEEECCCCeEEE
Confidence 33233567889998 5554444443 3 6888888865432 222211 123678899999 66666666655555999
Q ss_pred EECCCCCCCeeeec---ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558 158 LDIRFPTLPVVELQ---RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 158 ~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
+|+.... ...+. .......++++.. + .++++-...+.|..++..+++
T Consensus 191 ~d~dg~~--~~~~~~~~~~~~~P~giav~~-~-~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 191 IDVNGGN--RKTILEDEKRLAHPFSLAVFE-D-KVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EETTSCS--CEEEEECTTTTSSEEEEEEET-T-EEEEEETTTTEEEEEETTTCC
T ss_pred EecCCCc--eEEEeecCCccCCcEEEEEEC-C-EEEEEECCCCeEEEEeCCCCc
Confidence 9987533 22221 1223456788853 4 577777778899999876554
No 284
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.31 E-value=0.00034 Score=60.16 Aligned_cols=185 Identities=15% Similarity=0.146 Sum_probs=101.2
Q ss_pred CCCCceEEeec-----C--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC-----CeEEE
Q 035558 2 CQKPDLLATSS-----D--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID-----TTCTI 69 (253)
Q Consensus 2 p~~~~~l~~~~-----~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~v 69 (253)
|++|++||-+. + .|+++|+.++ .. .....+. .....++|+ ++++.|+....+ ..|++
T Consensus 183 ~PDG~~lAy~~~~~G~~~~~l~v~dl~~g-~~-~l~~~~~--------~~~~~~~Ws-pDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 183 PPEHDLVAFSVDMSGNEVYTIEFKRISDP-SQ-TIADKVS--------GTNGEIVWG-PDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp TTTTCEEEEEEESSSSSCEEEEEEETTCT-TC-CCCCCEE--------EECSCCEEC-SSTTEEEEEEECTTCCEEEEEE
T ss_pred CCCCCEEEEEEeCCCCceEEEEEEECCCC-CE-eCCcccc--------CceeeEEEe-cCCCEEEEEEECCCCCCCEEEE
Confidence 46777776432 2 5999999874 01 0011111 123478899 788777666654 26888
Q ss_pred EeccCcee--eeeee-cccccEEEEEec-CCCeEEEEeC---CCcEEEEEcCCCC-Ce--eeeeccCCCCCCeeEEEeeC
Q 035558 70 WDIEREAV--DTQLI-AHDKEVYDIAWG-GVGVFASVSA---DGSVRVFDLRDKE-HS--TIIYESSEPDTPLVRLGWNK 139 (253)
Q Consensus 70 wd~~~~~~--~~~~~-~~~~~v~~~~~~-~~~~l~~~~~---dg~i~i~d~~~~~-~~--~~~~~~~~~~~~i~~~~~~~ 139 (253)
+++.++.. ...+. ........+.|+ ++++|+..+. ...|.++|+.++. .. ..+. ........++.|+.
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~--~~~~~~~~s~~~~~ 329 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVR--PREKGVRYDVQMHG 329 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESS--CCCTTCCEEEEEET
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEee--cCCCCceEEEeeee
Confidence 88876542 22222 222345678899 9988776653 3458888988763 12 2222 22233556666653
Q ss_pred CCCCEEEEEEeCC----CeEEEEECCCCCCCeee-eccccc--ceeEEEEecCCCCeEEEecCCCcEEEEec
Q 035558 140 QDPRYMATIIMDS----AKVVVLDIRFPTLPVVE-LQRHQA--SVNAIAWAPHSSCHICTAGDDSQALIWDL 204 (253)
Q Consensus 140 ~~~~~l~~~~~~~----~~i~~~d~~~~~~~~~~-~~~~~~--~i~~~~~~~~~~~~l~~~~~dg~i~iwd~ 204 (253)
+..|+..+..+ ..|..+|+.+... ... +..+.. .+..+.+. +..++++...++..++|-+
T Consensus 330 --g~~l~~~t~~~~a~~~~L~~~d~~~~~~-~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 330 --TSHLVILTNEGGAVNHKLLIAPRGQPSD-WSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp --TTEEEEEECTTTCTTCEEEEEETTSTTC-CCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEE
T ss_pred --CCEEEEEeCCCCCCCcEEEEEcCCCccc-ceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEE
Confidence 44444443332 2377778764221 222 333333 34445544 4456677778886655543
No 285
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.29 E-value=0.0004 Score=55.64 Aligned_cols=199 Identities=10% Similarity=0.012 Sum_probs=108.6
Q ss_pred CeeEEEecCC-CCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCC---C-cEEEEEcCCCC
Q 035558 44 PLTSFDWNEA-EPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSAD---G-SVRVFDLRDKE 117 (253)
Q Consensus 44 ~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d---g-~i~i~d~~~~~ 117 (253)
....++|+|. +...|+.+...+.|+.+|..+++..... ........++++ +++++++.... . .+...+.....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 4568999832 2445555554488999999877654433 344568899999 88854444321 1 13333332221
Q ss_pred Ce-eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc--cccceeEEEEecCCCCeEEEec
Q 035558 118 HS-TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR--HQASVNAIAWAPHSSCHICTAG 194 (253)
Q Consensus 118 ~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~ 194 (253)
.. ..+.. ......++++|.++. |.++......|+.+|..+... ...+.. ....-..++|+|++..++++-.
T Consensus 219 ~~~~~~~~----~~~P~giavd~~~G~-lyv~d~~~~~V~~~d~~~g~~-~~~~~~~~~~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 219 TERLSLCN----ARGAKTCAVHPQNGK-IYYTRYHHAMISSYDPATGTL-TEEEVMMDTKGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp CCEEEEEE----CSSBCCCEECTTTCC-EEECBTTCSEEEEECTTTCCE-EEEEEECSCCSSCEEEEECTTSSEEEEEET
T ss_pred eccccccc----cCCCCEEEEeCCCCe-EEEEECCCCEEEEEECCCCeE-EEEEeccCCCCCcccEEEeCCCCEEEEEeC
Confidence 10 11111 124566888884444 444444443499999875432 122211 1122346999999943555666
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCeeecc---------------CCCceeEEEE---------cCCCCceEEEEcCCcEEE
Q 035558 195 DDSQALIWDLSSMGQPVEGGLDPILAYT---------------AGAEIEQLQW---------SSSQPDWVAIAFSTKLQI 250 (253)
Q Consensus 195 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~---------------~~~~v~~~~~---------~~~~~~~~~~~~~~~i~v 250 (253)
..+.|+.++........ ..+....+ .-.....+++ .+++..+++-...+.|+.
T Consensus 293 ~~~~I~~~~~d~~~~~~---~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~ 369 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKL---AVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRV 369 (433)
T ss_dssp TTTEEEEEEBCTTTCCB---CCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEE
T ss_pred CCCEEEEEeCCCCCccc---CcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEE
Confidence 77899998875322111 00001111 1234677888 677765556556667776
Q ss_pred EE
Q 035558 251 LR 252 (253)
Q Consensus 251 w~ 252 (253)
++
T Consensus 370 ~~ 371 (433)
T 4hw6_A 370 LT 371 (433)
T ss_dssp EC
T ss_pred EC
Confidence 54
No 286
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.21 E-value=0.00092 Score=51.21 Aligned_cols=158 Identities=7% Similarity=-0.094 Sum_probs=99.3
Q ss_pred CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEe--CCCcEEEEEcCCCCCee
Q 035558 44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVS--ADGSVRVFDLRDKEHST 120 (253)
Q Consensus 44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~--~dg~i~i~d~~~~~~~~ 120 (253)
....+++.+..+.++++-...+.|.++++........+...-.....+++. .+..++.+. ..+.|...++.......
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~ 159 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI 159 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE
Confidence 345788874456666666677899999987543222222334567888988 555555444 35788888887544222
Q ss_pred eeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEE
Q 035558 121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQAL 200 (253)
Q Consensus 121 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 200 (253)
.... .-.....++++| ++..|+.+......|..+|+..... ............++++..+ .++++-...+.|.
T Consensus 160 ~~~~---~l~~Pnglavd~-~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~glav~~~--~lywtd~~~~~V~ 232 (318)
T 3sov_A 160 IINS---EIYWPNGLTLDY-EEQKLYWADAKLNFIHKSNLDGTNR-QAVVKGSLPHPFALTLFED--ILYWTDWSTHSIL 232 (318)
T ss_dssp EECS---SCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSC-EEEECSCCSCEEEEEEETT--EEEEEETTTTEEE
T ss_pred EEEC---CCCCccEEEEec-cCCEEEEEECCCCEEEEEcCCCCce-EEEecCCCCCceEEEEeCC--EEEEEecCCCeEE
Confidence 2211 122568899999 6666666666555699999875332 2222223445677887643 4677777788999
Q ss_pred EEeccCCC
Q 035558 201 IWDLSSMG 208 (253)
Q Consensus 201 iwd~~~~~ 208 (253)
.++..+++
T Consensus 233 ~~~~~~G~ 240 (318)
T 3sov_A 233 ACNKYTGE 240 (318)
T ss_dssp EEETTTCC
T ss_pred EEECCCCC
Confidence 99986655
No 287
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.21 E-value=0.00019 Score=54.70 Aligned_cols=157 Identities=11% Similarity=0.163 Sum_probs=101.4
Q ss_pred eeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee-eec----c--cccEEEEEe---c-CCCeEEEEe----------
Q 035558 45 LTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ-LIA----H--DKEVYDIAW---G-GVGVFASVS---------- 103 (253)
Q Consensus 45 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~----~--~~~v~~~~~---~-~~~~l~~~~---------- 103 (253)
--+++|++..+.++++.-..++|..|+...+..... +.. . ...+..|.| . +++++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 347889844555555555789999999975543322 221 1 124578999 5 656666543
Q ss_pred ---CCCcEEEEEcC---CCCCeeeeeccC---C-------CCCCeeEEEeeCCCCCEEEEEEeC-CCeEEEEECCCCCCC
Q 035558 104 ---ADGSVRVFDLR---DKEHSTIIYESS---E-------PDTPLVRLGWNKQDPRYMATIIMD-SAKVVVLDIRFPTLP 166 (253)
Q Consensus 104 ---~dg~i~i~d~~---~~~~~~~~~~~~---~-------~~~~i~~~~~~~~~~~~l~~~~~~-~~~i~~~d~~~~~~~ 166 (253)
.+..|..+|+. +++......... . .......++..+ +++..++++.. +. |..++.....
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~-I~rV~pdG~~-- 170 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPA-IARVSADGKT-- 170 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCE-EEEECTTSCC--
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCe-EEEEeCCCCE--
Confidence 26779999999 665433322100 0 112578899999 89988888887 66 7777765432
Q ss_pred eeeec------ccccceeEEEEecCCCCeEEEecCCCcEEEEeccC
Q 035558 167 VVELQ------RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSS 206 (253)
Q Consensus 167 ~~~~~------~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 206 (253)
+..+. ......+.|+++|++ ++|++....|.+..+|+..
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSS
T ss_pred EeeeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCC
Confidence 22221 112346799999999 5666665599999999884
No 288
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.20 E-value=0.0012 Score=52.21 Aligned_cols=160 Identities=9% Similarity=-0.076 Sum_probs=100.9
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEe-C-CCcEEEEEcCCCCCe
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVS-A-DGSVRVFDLRDKEHS 119 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~-dg~i~i~d~~~~~~~ 119 (253)
.....+++.+..++++++-...+.|.+.+++.......+...-.....|++. .+..|+... . .+.|...++......
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~ 238 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 238 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence 3566888874466666676677899999987554433333333457889998 455444443 2 478888888765433
Q ss_pred eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc--cccceeEEEEecCCCCeEEEecCCC
Q 035558 120 TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR--HQASVNAIAWAPHSSCHICTAGDDS 197 (253)
Q Consensus 120 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg 197 (253)
..+. ..-.....|+++| ++..|+.+......|..+|+..... ...... .-....++++..+ .++++-...+
T Consensus 239 ~~~~---~~l~~P~glavd~-~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~~~--~lywtd~~~~ 311 (400)
T 3p5b_L 239 SLVT---ENIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED--KVFWTDIINE 311 (400)
T ss_dssp EEEC---SSCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEETT--EEEEEESSSC
T ss_pred EEEE---CCCCceEEEEEEe-CCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEeCC--EEEEecCCCC
Confidence 2222 1123678899999 6666666666555599999875432 222221 2234567777432 4777777888
Q ss_pred cEEEEeccCCCC
Q 035558 198 QALIWDLSSMGQ 209 (253)
Q Consensus 198 ~i~iwd~~~~~~ 209 (253)
.|..+|..+++.
T Consensus 312 ~V~~~~~~~G~~ 323 (400)
T 3p5b_L 312 AIFSANRLTGSD 323 (400)
T ss_dssp SEEEEESSSCCC
T ss_pred eEEEEEcCCCCc
Confidence 999998766653
No 289
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.19 E-value=3.3e-05 Score=65.71 Aligned_cols=157 Identities=9% Similarity=-0.072 Sum_probs=91.1
Q ss_pred eeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEe-C-CCcEEEEEcCCCCCeee
Q 035558 45 LTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVS-A-DGSVRVFDLRDKEHSTI 121 (253)
Q Consensus 45 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~-dg~i~i~d~~~~~~~~~ 121 (253)
...|++.+..++++++-...+.|.+.++........+.........|++. .+..|+.+. . .+.|..+++.......+
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l 534 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 534 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE
Confidence 45677774456666665667889999987554333232222445778887 444444333 2 26788888765432222
Q ss_pred eeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeec--ccccceeEEEEecCCCCeEEEecCCCcE
Q 035558 122 IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQ--RHQASVNAIAWAPHSSCHICTAGDDSQA 199 (253)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~i 199 (253)
+.. .-.....|+|+| ++..|+.+......|..+|+..... ...+. .......+|++..+ .++++....+.|
T Consensus 535 ~~~---~l~~PnGlavd~-~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V 607 (699)
T 1n7d_A 535 VTE---NIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED--KVFWTDIINEAI 607 (699)
T ss_dssp SCS---SCSSCCCEEECT-TTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT--EEEEECSTTTCE
T ss_pred EeC---CCCCccEEEEec-cCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC--EEEEEeCCCCeE
Confidence 111 122566799999 5555555555444599999875332 22221 11223455666554 467777778899
Q ss_pred EEEeccCCC
Q 035558 200 LIWDLSSMG 208 (253)
Q Consensus 200 ~iwd~~~~~ 208 (253)
..++..+++
T Consensus 608 ~~~d~~~G~ 616 (699)
T 1n7d_A 608 FSANRLTGS 616 (699)
T ss_dssp EEEETTTEE
T ss_pred EEEEccCCC
Confidence 999876543
No 290
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.15 E-value=0.0011 Score=55.33 Aligned_cols=146 Identities=14% Similarity=0.022 Sum_probs=79.9
Q ss_pred eEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeE-EEecCCCCCEEEEEe------CCCeEEEEeccCceee
Q 035558 7 LLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTS-FDWNEAEPRRIGTSS------IDTTCTIWDIEREAVD 78 (253)
Q Consensus 7 ~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~------~dg~i~vwd~~~~~~~ 78 (253)
+++...+ .|..+|..++ +.+...+...... ...+.+ -... ++ .++.++ .+|.|+.+|.++++.+
T Consensus 124 V~v~t~dg~l~AlDa~TG----~~~W~~~~~~~~~-~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~ 195 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETG----ETVWKVENSDIKV-GSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQV 195 (599)
T ss_dssp EEEECTTSEEEEEETTTC----CEEEEEECCCGGG-TCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred EEEEcCCCEEEEEECCCC----CEEEeecCCCCCc-cceeecCCEEE--CC-EEEEEecccccCCCCeEEEEECCCCcEE
Confidence 5555456 8999999887 5444433211000 001111 1111 33 455554 3799999999999987
Q ss_pred eeeeccccc-------------------------------------E-EEEEec-CCCeEEEEeCC--------------
Q 035558 79 TQLIAHDKE-------------------------------------V-YDIAWG-GVGVFASVSAD-------------- 105 (253)
Q Consensus 79 ~~~~~~~~~-------------------------------------v-~~~~~~-~~~~l~~~~~d-------------- 105 (253)
..+...... + ..+++. ...+++.+..+
T Consensus 196 W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~ 275 (599)
T 1w6s_A 196 WRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNK 275 (599)
T ss_dssp EEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred EEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCcc
Confidence 665522110 0 023444 45566666654
Q ss_pred --CcEEEEEcCCCCCeeeeeccCCCC--------CCeeEEEee-CCCC---CEEEEEEeCCCeEEEEECCCCC
Q 035558 106 --GSVRVFDLRDKEHSTIIYESSEPD--------TPLVRLGWN-KQDP---RYMATIIMDSAKVVVLDIRFPT 164 (253)
Q Consensus 106 --g~i~i~d~~~~~~~~~~~~~~~~~--------~~i~~~~~~-~~~~---~~l~~~~~~~~~i~~~d~~~~~ 164 (253)
+.|..+|.++++..-.. ....+. .++. +... . ++ ..++.++.++. ++++|.++++
T Consensus 276 y~~sv~Ald~~TG~~~W~~-q~~~~d~wd~d~~~~p~l-~d~~~~-~G~~~~~v~~~~~~G~-l~~lD~~tG~ 344 (599)
T 1w6s_A 276 WTMTIFGRDADTGEAKFGY-QKTPHDEWDYAGVNVMML-SEQKDK-DGKARKLLTHPDRNGI-VYTLDRTDGA 344 (599)
T ss_dssp TSSEEEEEETTTCCEEEEE-ESSTTCSSCCCCCCCCEE-EEEECT-TSCEEEEEEEECTTSE-EEEEETTTCC
T ss_pred ccceEEEEeCCCCceeeEe-ecCCCccccccCCCccEE-Eecccc-CCcEEEEEEEECCCcE-EEEEECCCCC
Confidence 37999999998743222 222221 1121 2222 2 45 45666777777 9999998866
No 291
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.01 E-value=0.0048 Score=51.78 Aligned_cols=191 Identities=12% Similarity=-0.002 Sum_probs=111.0
Q ss_pred eEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeeccc
Q 035558 7 LLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHD 85 (253)
Q Consensus 7 ~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 85 (253)
+|+.+.. .|+..+++.. ........+.+- ..+.+++|.+.++.++++-...+.|+.+++........+...-
T Consensus 319 ~Ll~~~~~~i~~i~l~~~-~~~~~~~~~~~l------~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~ 391 (619)
T 3s94_A 319 LLLLARRTDLRRISLDTP-DFTDIVLQLEDI------RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQI 391 (619)
T ss_dssp EEEEEESSCEEEEESSST-TCCCEECCCSCC------SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred EEEEEcccceEEEecCCC-ccceeEEecccc------CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCC
Confidence 3444444 7777777653 111111111111 3567899994455556665567889999987543333233222
Q ss_pred ccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCC
Q 035558 86 KEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFP 163 (253)
Q Consensus 86 ~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~ 163 (253)
..+..+++. .++++.+-+..+.|.+.++..... ..+.. ..-.....++++|..+.++.+-......|...++...
T Consensus 392 ~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~-~~l~~--~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~ 468 (619)
T 3s94_A 392 AHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR-KILIS--EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGS 468 (619)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC--TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE-EEEEE--CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCC
Confidence 456678887 555666666788999999886643 22222 1223678999999445444443222223777676543
Q ss_pred CCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558 164 TLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 164 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
.. .......-...+.+++++++.++.++-+..+.|..+++....
T Consensus 469 ~~-~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~ 512 (619)
T 3s94_A 469 DR-VVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG 512 (619)
T ss_dssp SC-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred cc-EEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc
Confidence 32 222222345678999998764444555566889889886543
No 292
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.95 E-value=0.0074 Score=52.13 Aligned_cols=233 Identities=8% Similarity=0.014 Sum_probs=126.9
Q ss_pred CCceEEeecC-cEEEEEccCCccccceeeeecCCCC-ccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKN-SEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
++.+.++..+ .|..|+..+. + ...+..... ......|.++... .++. |..|+.++-|..||..+++...-.
T Consensus 127 ~g~lwi~t~~~gl~~~~~~~~----~-~~~~~~~~~~~l~~~~i~~i~~d-~~g~-lwigt~~~Gl~~~~~~~~~~~~~~ 199 (781)
T 3v9f_A 127 GKGLWVCTYYRGIEYLDIATG----K-FTHYNKSTVPALPSEQTWTATEA-EDGK-LYIGHVEGGLSILSLNDKSVKHFV 199 (781)
T ss_dssp TSEEEEEESSSCEEEEETTTT----E-EEEESTTTCTTCSCCCEEEEEEE-ETTE-EEEEETTTEEEEEETTTTEEEEEC
T ss_pred CCCEEEEECCCCeeEEECCCC----e-EEeeccCcccCCCccceEEEEEC-CCCC-EEEEecCCCeEEEcCCCCceEeee
Confidence 3445554424 7888887663 2 222211000 0001457788776 4554 555666656888998776533211
Q ss_pred e-------cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeecc----CCCCCCeeEEEeeCCCCCEEEEEE
Q 035558 82 I-------AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYES----SEPDTPLVRLGWNKQDPRYMATII 149 (253)
Q Consensus 82 ~-------~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~l~~~~ 149 (253)
. -....|.++... ++.+.+. +.+ -+.+||..+.+........ ......|.++...+ ++. +..|+
T Consensus 200 ~~~~~~~~l~~~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~-lWigt 275 (781)
T 3v9f_A 200 HDPQNPNSLPGNDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLK-DNK-LWIAT 275 (781)
T ss_dssp C--------CCSSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECT-TSE-EEEEE
T ss_pred cCCCCcccCCCCceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECC-CCC-EEEEe
Confidence 0 013468888877 6655554 445 5888998765422111110 11234788888876 554 55566
Q ss_pred eCCCeEEEEECCCCCCCeeee-------------cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCC
Q 035558 150 MDSAKVVVLDIRFPTLPVVEL-------------QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLD 216 (253)
Q Consensus 150 ~~~~~i~~~d~~~~~~~~~~~-------------~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 216 (253)
..++ |.++|..+........ ......|.++...++| .|..|+.++-|..++.......... ..
T Consensus 276 ~~~G-l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~~~~-~~ 351 (781)
T 3v9f_A 276 ELNG-IMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN--NIWIGTWGGGINFISNAPPTFHTWS-YS 351 (781)
T ss_dssp SSSC-EEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSC--CEEEEEBSSCEEEECSSCCSCEEEC---
T ss_pred CCCC-eEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC--CEEEEecCCeEEEeCCCCCcceeec-cC
Confidence 6567 9999987644211110 1124578999988887 4777777788999987654321100 00
Q ss_pred Ce---eeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 217 PI---LAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 217 ~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
+. ...-....|.++...+++. +-.++.++.+..++
T Consensus 352 ~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~ 389 (781)
T 3v9f_A 352 PTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFE 389 (781)
T ss_dssp --CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEE
T ss_pred ccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEE
Confidence 00 0011245689999988886 44555555666654
No 293
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.94 E-value=0.0008 Score=51.30 Aligned_cols=163 Identities=9% Similarity=0.065 Sum_probs=96.7
Q ss_pred cccEEEEEec-CCC-eEEEEeCCCcEEEEEcCCCCCeeeeecc----CCCCCCeeEEEe---eCCCCCEEEEEEe-----
Q 035558 85 DKEVYDIAWG-GVG-VFASVSADGSVRVFDLRDKEHSTIIYES----SEPDTPLVRLGW---NKQDPRYMATIIM----- 150 (253)
Q Consensus 85 ~~~v~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~i~~~~~---~~~~~~~l~~~~~----- 150 (253)
..-..+.+|+ ... ++++.-..++|..||...+......... ......+..+.| .| ++.++++...
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFN 90 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTC
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccc
Confidence 3344567898 444 4444447999999999765433221111 011124578999 68 6777776442
Q ss_pred --------CCCeEEEEECC---CCCCCeeeec--cc-----------ccceeEEEEecCCCCeEEEecCC-CcEEEEecc
Q 035558 151 --------DSAKVVVLDIR---FPTLPVVELQ--RH-----------QASVNAIAWAPHSSCHICTAGDD-SQALIWDLS 205 (253)
Q Consensus 151 --------~~~~i~~~d~~---~~~~~~~~~~--~~-----------~~~i~~~~~~~~~~~~l~~~~~d-g~i~iwd~~ 205 (253)
+.. +..||+. +.+. +.... .. ....+.++..++| +..++++.- +.|..++..
T Consensus 91 ~~g~~~~g~~~-v~~~Dl~~~~tg~~-~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 91 FADQSSHGASS-FHSFNLPLSENSKP-VWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTSCCSSSCCE-EEEEESSCCTTCCC-SEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEECTT
T ss_pred ccccccCCCCE-EEEEcCCcCCCCCE-EEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEEeCC
Confidence 344 9999998 5543 32221 11 1248899999999 577777776 776666554
Q ss_pred CCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 206 SMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
......-.... .........+.|+++|++..|++....+.+..+++
T Consensus 168 G~~~~~~~~~~--~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~ 213 (334)
T 2p9w_A 168 GKTVSTFAWES--GNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDV 213 (334)
T ss_dssp SCCEEEEEECC--CCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEEC
T ss_pred CCEEeeeeecC--CCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcC
Confidence 43211000000 00112234779999999988887766887877664
No 294
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.90 E-value=0.0043 Score=47.74 Aligned_cols=190 Identities=8% Similarity=0.090 Sum_probs=109.8
Q ss_pred CCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-----CCC---e-EEEEeC--CCcEEEEEcCCC-CCeee
Q 035558 54 EPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-----GVG---V-FASVSA--DGSVRVFDLRDK-EHSTI 121 (253)
Q Consensus 54 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-----~~~---~-l~~~~~--dg~i~i~d~~~~-~~~~~ 121 (253)
...+++.....+-+.+||+ +++.++.+.. +.++.+..- .++ + +++.-. +++|.+|++... .....
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 3456776777889999999 6888887763 344444332 233 2 233333 578999987422 22222
Q ss_pred eecc--C--CCCCCeeEEEe--eCCCCC-EEEEEEeCCCeEEEEECCCCC------CCeeeecccccceeEEEEecCCCC
Q 035558 122 IYES--S--EPDTPLVRLGW--NKQDPR-YMATIIMDSAKVVVLDIRFPT------LPVVELQRHQASVNAIAWAPHSSC 188 (253)
Q Consensus 122 ~~~~--~--~~~~~i~~~~~--~~~~~~-~l~~~~~~~~~i~~~d~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~ 188 (253)
+... + .....++.+++ +|..+. ++++...++. +..|++.... +.+.++.. ...+-.+...+.. .
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~-~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~-g 192 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGE-FEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEY-G 192 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSE-EEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTT-T
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCe-EEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCC-C
Confidence 2111 1 11135667777 674554 5666666665 9898884321 22444443 3567788888877 4
Q ss_pred eEEEecCCCcEEEEeccCCCCCCCCCCCCeeec--cC-CCceeEEEE--cCCCC-ceEEEE-cCCcEEEEE
Q 035558 189 HICTAGDDSQALIWDLSSMGQPVEGGLDPILAY--TA-GAEIEQLQW--SSSQP-DWVAIA-FSTKLQILR 252 (253)
Q Consensus 189 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~-~~~v~~~~~--~~~~~-~~~~~~-~~~~i~vw~ 252 (253)
.|+.+-+|..|..++.+...... ....... ++ ...+..|+. .++++ ++++++ .++...+|+
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~---~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSN---GTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSC---CEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred eEEEecccceEEEEeCCcCCCCC---ceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 89999998766666644322100 0011122 22 246778887 55555 576666 566788876
No 295
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.87 E-value=0.0038 Score=51.97 Aligned_cols=55 Identities=15% Similarity=0.062 Sum_probs=32.8
Q ss_pred CcEEEEEcCCCCCeeeeeccCCCC--------CCeeEEEee-CCCC---CEEEEEEeCCCeEEEEECCCCC
Q 035558 106 GSVRVFDLRDKEHSTIIYESSEPD--------TPLVRLGWN-KQDP---RYMATIIMDSAKVVVLDIRFPT 164 (253)
Q Consensus 106 g~i~i~d~~~~~~~~~~~~~~~~~--------~~i~~~~~~-~~~~---~~l~~~~~~~~~i~~~d~~~~~ 164 (253)
+.|..+|.++++..-.... ..+. .++. +... . ++ ..++.++.++. ++++|.++++
T Consensus 291 ~~v~AlD~~TG~~~W~~q~-~~~d~wd~~~~~~p~l-~~~~~~-~G~~~~~v~~~~~~G~-l~~lD~~tG~ 357 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQH-TPNDAWDFSGNNELVL-FDYKAK-DGKIVKATAHADRNGF-FYVVDRSNGK 357 (582)
T ss_dssp SEEEEECTTTCCEEEEEES-STTCCSCCCCCCCCEE-EEEECS-SSCEEEEEEEECTTSE-EEEEETTTCC
T ss_pred ceEEEEeCCCCCEEEEEeC-CCCCcccccCCCCcEE-EeeecC-CCCEEEEEEEECCCce-EEEEECCCCC
Confidence 5899999999874332221 1111 1221 2222 2 45 36777777777 9999998765
No 296
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.86 E-value=0.0053 Score=47.61 Aligned_cols=186 Identities=12% Similarity=0.077 Sum_probs=106.2
Q ss_pred eEEEecCCCCCEEEEE------------eCCCeEEEEeccCc--ee-eeeeec-----ccccEEEEEec-C--CC--eEE
Q 035558 46 TSFDWNEAEPRRIGTS------------SIDTTCTIWDIERE--AV-DTQLIA-----HDKEVYDIAWG-G--VG--VFA 100 (253)
Q Consensus 46 ~~~~~~~~~~~~l~~~------------~~dg~i~vwd~~~~--~~-~~~~~~-----~~~~v~~~~~~-~--~~--~l~ 100 (253)
-.+... +++..++++ ..+|.|.++|..+. +. ...+.+ .......+.+. + +. +++
T Consensus 53 EDi~~~-~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 53 EDLEIL-PNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CEEEEC-TTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred ceeEEc-CCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 366666 566554443 16899999998742 21 112222 22456677765 2 33 344
Q ss_pred EEeC--CCcEEEEEcCCCCCeee-eeccC-CCCCCeeEEEeeCCCCCEEEEEEe-----------------CCCeEEEEE
Q 035558 101 SVSA--DGSVRVFDLRDKEHSTI-IYESS-EPDTPLVRLGWNKQDPRYMATIIM-----------------DSAKVVVLD 159 (253)
Q Consensus 101 ~~~~--dg~i~i~d~~~~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~-----------------~~~~i~~~d 159 (253)
+-.. +.+|.+|++........ +.... ..-...+.+++.+ ++.+.++... .+. |..+|
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~-vyr~d 209 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSF-VTYYS 209 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEE-EEEEC
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccE-EEEEE
Confidence 4333 56788888876543222 22211 2223678899998 7877666431 123 55555
Q ss_pred CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcC-CCCc
Q 035558 160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS-SQPD 238 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 238 (253)
.. . +..+...-...+.++|+|++..+.++-+..+.|..|++....... ...........-.++..+ +|..
T Consensus 210 ~~---~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~-----~~~~~~~~g~PDGi~vD~e~G~l 280 (355)
T 3sre_A 210 PN---D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLT-----PLRVLSFDTLVDNISVDPVTGDL 280 (355)
T ss_dssp TT---C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEE-----EEEEEECSSEEEEEEECTTTCCE
T ss_pred CC---e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEe-----cCEEEeCCCCCceEEEeCCCCcE
Confidence 42 2 333333345678999999995444555678999999987432211 011123356778899998 5886
Q ss_pred eEEEE
Q 035558 239 WVAIA 243 (253)
Q Consensus 239 ~~~~~ 243 (253)
++++.
T Consensus 281 wva~~ 285 (355)
T 3sre_A 281 WVGCH 285 (355)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 66554
No 297
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.85 E-value=0.002 Score=52.26 Aligned_cols=162 Identities=10% Similarity=0.122 Sum_probs=92.8
Q ss_pred EEEEEec-C-CC-eEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEe-------eCCCCCEEEEEEeCC-----
Q 035558 88 VYDIAWG-G-VG-VFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGW-------NKQDPRYMATIIMDS----- 152 (253)
Q Consensus 88 v~~~~~~-~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~~l~~~~~~~----- 152 (253)
...|+|. . .. ++++-...+.|++.|+.++..................++| ++ +++.|+++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGGG
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCccc
Confidence 4577887 2 34 4444444467888998877643333222212235889999 99 777677666554
Q ss_pred -CeEEEEECCCCCCCe-----eeecccccceeEEEEecCCCCeEEEecCCCcEEEEecc-------CCCC--CCCCC---
Q 035558 153 -AKVVVLDIRFPTLPV-----VELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLS-------SMGQ--PVEGG--- 214 (253)
Q Consensus 153 -~~i~~~d~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~-------~~~~--~~~~~--- 214 (253)
..|.+++........ ..+.. -.....++++|++..++++-..++.|..+|+. ++.. +....
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 126666633311111 22222 23456789999654566677788899999997 4442 10000
Q ss_pred -CCCeeeccCCCceeEEEEcCCCCc-eEEEEcCCcEEEE
Q 035558 215 -LDPILAYTAGAEIEQLQWSSSQPD-WVAIAFSTKLQIL 251 (253)
Q Consensus 215 -~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~i~vw 251 (253)
.......+.......|+|+|++.. +++-...+.|+.+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~ki 337 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRS 337 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEE
Confidence 000111223455689999999984 4455556666654
No 298
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.81 E-value=0.011 Score=49.62 Aligned_cols=162 Identities=11% Similarity=0.035 Sum_probs=98.5
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec------ccccEEEEEec-C-CCeEEEEeCCCcEEEEEcC
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA------HDKEVYDIAWG-G-VGVFASVSADGSVRVFDLR 114 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------~~~~v~~~~~~-~-~~~l~~~~~dg~i~i~d~~ 114 (253)
..+.+++|.+.++.++++=...+.|+.++.........+.. ....+..|++. . ++++.+-+..+.|.+.++.
T Consensus 340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~ 419 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD 419 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence 45778999954555555545577898888764432222322 23467889988 4 5566677778899999987
Q ss_pred CCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC-eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEe
Q 035558 115 DKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA-KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTA 193 (253)
Q Consensus 115 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 193 (253)
... ...+.. ........++++|..+.++.+-..... .|...++..... .......-...+.+++++...++.++-
T Consensus 420 G~~-~~~l~~--~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~-~~l~~~~l~~P~gla~D~~~~~LYw~D 495 (628)
T 4a0p_A 420 GRS-VGVVLK--GEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER-EVLFFSGLSKPIALALDSRLGKLFWAD 495 (628)
T ss_dssp SCE-EEEEEE--CTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred CCe-EEEEEe--CCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc-EEEEeccCCCccEEEEeCCCCEEEEEe
Confidence 542 223322 122368899999955555555433331 266666653322 222222334578999999874444555
Q ss_pred cCCCcEEEEeccCCC
Q 035558 194 GDDSQALIWDLSSMG 208 (253)
Q Consensus 194 ~~dg~i~iwd~~~~~ 208 (253)
+..+.|..+++....
T Consensus 496 ~~~~~I~~~~~dG~~ 510 (628)
T 4a0p_A 496 SDLRRIESSDLSGAN 510 (628)
T ss_dssp TTTTEEEEEETTSCS
T ss_pred CCCCEEEEEeCCCCc
Confidence 567889999986543
No 299
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.70 E-value=0.0082 Score=45.28 Aligned_cols=186 Identities=11% Similarity=0.034 Sum_probs=93.0
Q ss_pred CceEEeec----C----cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC-----CeEEEEe
Q 035558 5 PDLLATSS----D----FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID-----TTCTIWD 71 (253)
Q Consensus 5 ~~~l~~~~----~----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vwd 71 (253)
+.+++.|+ . .+.+||+.+. .+..+..+.... ..- ++.. .++.+++.|+.+ ..+.+||
T Consensus 15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r-----~~~-~~~~--~~~~l~v~GG~~~~~~~~~~~~~d 84 (301)
T 2vpj_A 15 EVLLVVGGFGSQQSPIDVVEKYDPKTQ--EWSFLPSITRKR-----RYV-ASVS--LHDRIYVIGGYDGRSRLSSVECLD 84 (301)
T ss_dssp EEEEEECCEETTTEECCCEEEEETTTT--EEEECCCCSSCC-----BSC-EEEE--ETTEEEEECCBCSSCBCCCEEEEE
T ss_pred CEEEEEeCccCCCcceeEEEEEcCCCC--eEEeCCCCChhh-----ccc-cEEE--ECCEEEEEcCCCCCccCceEEEEE
Confidence 45566665 1 6888888773 222222222111 111 2222 246677777754 3688999
Q ss_pred ccCce---e--eeeeecccccEEEEEecCCCeEEEEeCC-----CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC
Q 035558 72 IEREA---V--DTQLIAHDKEVYDIAWGGVGVFASVSAD-----GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD 141 (253)
Q Consensus 72 ~~~~~---~--~~~~~~~~~~v~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 141 (253)
..+.+ - +..+....... +++..++.+++.|+.+ ..+.+||+.+.+-.. +.........- +++.. +
T Consensus 85 ~~~~~~~~W~~~~~~p~~r~~~-~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~~~~--~ 159 (301)
T 2vpj_A 85 YTADEDGVWYSVAPMNVRRGLA-GATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSM-LGDMQTAREGA-GLVVA--S 159 (301)
T ss_dssp TTCCTTCCCEEECCCSSCCBSC-EEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEE-EEECSSCCBSC-EEEEE--T
T ss_pred CCCCCCCeeEECCCCCCCccce-eEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEE-CCCCCCCcccc-eEEEE--C
Confidence 87765 2 22222111111 1222267777777654 358889988765222 22222221111 22222 5
Q ss_pred CCEEEEEEeCC----CeEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEEecCC-----CcEEEEeccCCC
Q 035558 142 PRYMATIIMDS----AKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICTAGDD-----SQALIWDLSSMG 208 (253)
Q Consensus 142 ~~~l~~~~~~~----~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 208 (253)
+.+++.|+.++ ..+.+||..+..- .+..+...... .++... ++ ++++.|+.+ ..+.+||+.+..
T Consensus 160 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 160 GVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSG-AGVALL-ND-HIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TT-EEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCccccc-ceEEEE-CC-EEEEEeCCCCCcccceEEEEeCCCCc
Confidence 67777777543 2388999876431 11111111111 122222 34 577777754 468899988754
No 300
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.69 E-value=0.011 Score=45.99 Aligned_cols=227 Identities=11% Similarity=0.029 Sum_probs=111.5
Q ss_pred CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCC----CCEEEEEeCC-----CeEEEEec
Q 035558 3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAE----PRRIGTSSID-----TTCTIWDI 72 (253)
Q Consensus 3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~d-----g~i~vwd~ 72 (253)
++++++++-.. .|++++ +.. .+.+..+.... .-......++|+ ++ +.++++-... +.|..++.
T Consensus 40 pdG~l~V~e~~g~I~~i~-~g~---~~~~~~~~v~~--~g~~~p~gia~~-pdf~~~g~lYv~~~~~~~~~~~~v~r~~~ 112 (352)
T 2ism_A 40 PDGGMLIAERPGRIRLFR-EGR---LSTYAELSVYH--RGESGLLGLALH-PRFPQEPYVYAYRTVAEGGLRNQVVRLRH 112 (352)
T ss_dssp TTSCEEEEETTTEEEEEE-TTE---EEEEEECCCCC--STTCSEEEEEEC-TTTTTSCEEEEEEEECTTSSEEEEEEEEE
T ss_pred CCCeEEEEeCCCeEEEEE-CCC---ccEeecceEee--cCCCCceeEEEC-CCCCCCCEEEEEEecCCCCCccEEEEEEe
Confidence 35667777665 888887 221 12222221000 001467899999 55 4444444332 57777887
Q ss_pred cCce------eeeeee---cccccEEEEEec-CCCeEEEEeCC-------------CcEEEEEcCCC------------C
Q 035558 73 EREA------VDTQLI---AHDKEVYDIAWG-GVGVFASVSAD-------------GSVRVFDLRDK------------E 117 (253)
Q Consensus 73 ~~~~------~~~~~~---~~~~~v~~~~~~-~~~~l~~~~~d-------------g~i~i~d~~~~------------~ 117 (253)
..++ .+..+. ........++|. ++.++++.+.. |.|.-++.... .
T Consensus 113 ~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~ 192 (352)
T 2ism_A 113 LGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGA 192 (352)
T ss_dssp CSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTS
T ss_pred CCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCC
Confidence 6431 111122 111123678998 88766664321 45555555431 0
Q ss_pred CeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC-------eEEEEECCC---------------CCCCeeeeccccc
Q 035558 118 HSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA-------KVVVLDIRF---------------PTLPVVELQRHQA 175 (253)
Q Consensus 118 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~-------~i~~~d~~~---------------~~~~~~~~~~~~~ 175 (253)
....... ++ .....++|+|.++.++++-...+. .|.+..... ...++..+..| .
T Consensus 193 ~~~i~a~--G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~-~ 268 (352)
T 2ism_A 193 RPEVYSL--GH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQG-F 268 (352)
T ss_dssp CTTEEEE--CC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC-C
T ss_pred CccEEEE--cC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCC-C
Confidence 0011110 11 135668899855555444322221 133332111 01233333222 3
Q ss_pred ceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEE
Q 035558 176 SVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA 243 (253)
Q Consensus 176 ~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 243 (253)
....++| .++ .++++.-..+.|...++......... .....+......+..+++.|+|..+++..
T Consensus 269 ap~G~~~-~~G-~l~v~~~~~~~v~~v~~~~~~~~~~~-~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 269 PPGNLAF-FRG-DLYVAGLRGQALLRLVLEGERGRWRV-LRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CEEEEEE-ETT-EEEEEETTTTEEEEEEEEEETTEEEE-EEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCcceEE-ECC-EEEEEECCCCEEEEEEECCCCcceee-cchheecccCCCeeEEEECCCCcEEEEEe
Confidence 4567888 455 46666667788888887654321000 00011223346789999999997655543
No 301
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.69 E-value=0.0098 Score=45.62 Aligned_cols=150 Identities=8% Similarity=0.080 Sum_probs=83.4
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEE-Eec--cCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCC
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTI-WDI--EREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEH 118 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~v-wd~--~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~ 118 (253)
..+..+.+. +++.+++.+. +|.+.. .|- .+-+.+. ......+..+.+. ++..+ .++.+|.+++.+...++.
T Consensus 163 ~~~~~~~~~-~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~t 237 (327)
T 2xbg_A 163 GVMRNLNRS-PSGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSEN 237 (327)
T ss_dssp CCEEEEEEC-TTSCEEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEE
T ss_pred cceEEEEEc-CCCcEEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCe
Confidence 568899998 6677776664 454443 332 1112221 2345678888888 66554 556678877764222221
Q ss_pred eeeeecc-CCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeec---ccccceeEEEEecCCCCeEEEec
Q 035558 119 STIIYES-SEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQ---RHQASVNAIAWAPHSSCHICTAG 194 (253)
Q Consensus 119 ~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~ 194 (253)
...+... ......+..+.+.+ ++.+++++ .++. + ++....+.. -..+. .....++++.|.+++ .+++++
T Consensus 238 W~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g-~~g~-i-~~S~DgG~t-W~~~~~~~~~~~~~~~v~~~~~~--~~~~~G 310 (327)
T 2xbg_A 238 WGELLSPLRRNSVGFLDLAYRT-PNEVWLAG-GAGA-L-LCSQDGGQT-WQQDVDVKKVPSNFYKILFFSPD--QGFILG 310 (327)
T ss_dssp ECCCBCTTSSCCSCEEEEEESS-SSCEEEEE-STTC-E-EEESSTTSS-CEECGGGTTSSSCCCEEEEEETT--EEEEEC
T ss_pred eEeccCCcccCCcceEEEEecC-CCEEEEEe-CCCe-E-EEeCCCCcc-cEEcCccCCCCCCeEEEEEECCC--ceEEEc
Confidence 1111111 01122578899987 66666654 4665 5 344333332 22232 123567889998654 566777
Q ss_pred CCCcEEEEec
Q 035558 195 DDSQALIWDL 204 (253)
Q Consensus 195 ~dg~i~iwd~ 204 (253)
.+|.|.-++-
T Consensus 311 ~~G~i~~~~~ 320 (327)
T 2xbg_A 311 QKGILLRYVT 320 (327)
T ss_dssp STTEEEEECC
T ss_pred CCceEEEEcC
Confidence 7898776653
No 302
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.68 E-value=0.0093 Score=45.10 Aligned_cols=186 Identities=6% Similarity=-0.052 Sum_probs=93.8
Q ss_pred CceEEeec-C---cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC----CeEEEEeccCce
Q 035558 5 PDLLATSS-D---FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID----TTCTIWDIEREA 76 (253)
Q Consensus 5 ~~~l~~~~-~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~ 76 (253)
+.+++.|+ + .+.+||..+. .+..+..+.... ..-..+. .++.+++.|+.+ ..+.+||+.+.+
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~--~W~~~~~~p~~r-----~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~d~~~~~ 81 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDY--SWTDIRCPFEKR-----RDAACVF---WDNVVYILGGSQLFPIKRMDCYNVVKDS 81 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTT--EEEECCCCSCCC-----BSCEEEE---ETTEEEEECCBSSSBCCEEEEEETTTTE
T ss_pred ceEEEEeCCCCCceEEEecCCCC--CEecCCCCCccc-----ceeEEEE---ECCEEEEEeCCCCCCcceEEEEeCCCCe
Confidence 44556665 2 8999998873 222222222111 1112222 246677777754 578889988775
Q ss_pred eee--eeecccccEEEEEecCCCeEEEEeCC------CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558 77 VDT--QLIAHDKEVYDIAWGGVGVFASVSAD------GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI 148 (253)
Q Consensus 77 ~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 148 (253)
-.. .+....... +++..++.+++.|+.+ ..+.+||..+.+-. .+.........- +++.. ++.+++.|
T Consensus 82 W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~-~~~~~--~~~iyv~G 156 (306)
T 3ii7_A 82 WYSKLGPPTPRDSL-AACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWH-TKPSMLTQRCSH-GMVEA--NGLIYVCG 156 (306)
T ss_dssp EEEEECCSSCCBSC-EEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEE-EECCCSSCCBSC-EEEEE--TTEEEEEC
T ss_pred EEECCCCCccccce-eEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceE-eCCCCcCCccee-EEEEE--CCEEEEEC
Confidence 222 222111111 1222267777888765 45889998876522 222222111111 22222 56677777
Q ss_pred EeCC--------CeEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEEecCC-----CcEEEEeccCCC
Q 035558 149 IMDS--------AKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICTAGDD-----SQALIWDLSSMG 208 (253)
Q Consensus 149 ~~~~--------~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 208 (253)
+.++ ..+.+||..+..- .+..+..... -.++... ++ ++++.|+.+ ..+.+||+.+..
T Consensus 157 G~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~-~~-~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 157 GSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARK-NHGLVFV-KD-KIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp CEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCB-SCEEEEE-TT-EEEEECCEETTEEBCCEEEEETTTTE
T ss_pred CCCCCCCcccccceEEEeCCCCCeEEECCCccchhh-cceEEEE-CC-EEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 6421 2288999876531 1111111111 1222222 44 577777754 468889988754
No 303
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.65 E-value=0.0082 Score=47.38 Aligned_cols=144 Identities=8% Similarity=0.110 Sum_probs=88.4
Q ss_pred CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce-------
Q 035558 5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA------- 76 (253)
Q Consensus 5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------- 76 (253)
+.-++.+-+ .||.-++... ...+.++......+ ..|..+..+ ++|++||..+ +..|.|-.+..+.
T Consensus 32 ~t~i~~a~~n~iR~~~i~~~----~~Yk~L~~~~~i~f-~~i~qlvlS-psG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 32 GTRIVFIQDNIIRWYNVLTD----SLYHSLNFSRHLVL-DDTFHVISS-TSGDLLCLFN-DNEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp TTEEEEEETTEEEEEETTTC----SSCEEEECTTTCCC-CTTCEEEEC-TTSSEEEEEC-SSEEEEEECCTTCSCCCCHH
T ss_pred CCEEEEEECCEEEEEECCCC----CcceEEecCccccc-CceeEEEEC-CCCCEEEEec-CCeEEEEEecCccccCcccc
Confidence 333444444 7777777653 22333322200001 357789999 8999999886 4578888876322
Q ss_pred -----eeeeeec------ccccEEEEEec----CCCeEEEEeCCCcEEEEEcCCCCC-eeee------eccCCCCCCeeE
Q 035558 77 -----VDTQLIA------HDKEVYDIAWG----GVGVFASVSADGSVRVFDLRDKEH-STII------YESSEPDTPLVR 134 (253)
Q Consensus 77 -----~~~~~~~------~~~~v~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~-~~~~------~~~~~~~~~i~~ 134 (253)
....++- ...+|..+.|| .+..|++-..|+.|++||+..... +..+ +........|.+
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEE
Confidence 0112221 24679999999 577999999999999999986332 1111 111222357889
Q ss_pred EEeeCCCCCEEEEEE--eCCCeEEE
Q 035558 135 LGWNKQDPRYMATII--MDSAKVVV 157 (253)
Q Consensus 135 ~~~~~~~~~~l~~~~--~~~~~i~~ 157 (253)
++|.+ ++-.|.+.+ ..|. |+-
T Consensus 185 ~~Fg~-~~lTLYvl~~t~~GD-IYA 207 (452)
T 3pbp_A 185 LEFSK-DGLTLYCLNTTEGGD-IFA 207 (452)
T ss_dssp EEECT-TSSCEEEEECTTSCE-EEE
T ss_pred EEEcC-CCcEEEEEecCCCCC-EEE
Confidence 99998 777666655 4454 543
No 304
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.60 E-value=0.016 Score=45.73 Aligned_cols=151 Identities=9% Similarity=0.093 Sum_probs=91.7
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccC-CCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC-CC------
Q 035558 95 GVGVFASVSADGSVRVFDLRDKEHSTIIYESS-EPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT-LP------ 166 (253)
Q Consensus 95 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-~~------ 166 (253)
++..++.+ .++.||.-++.....-+.+.... ..-..+..+..+| +|+++|..+..+ |.|..+..+. ..
T Consensus 31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g~~~--V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFNDNE--IFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEECSSE--EEEEECCTTCSCCCCHHHH
T ss_pred CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEecCCe--EEEEEecCccccCcccccc
Confidence 44444443 24778888877544333333321 1223678899999 999999986553 8888887322 10
Q ss_pred ----eeeecc------cccceeEEEEecCCC--CeEEEecCCCcEEEEeccCCC-CCCCCCCC-C-eeeccCCCceeEEE
Q 035558 167 ----VVELQR------HQASVNAIAWAPHSS--CHICTAGDDSQALIWDLSSMG-QPVEGGLD-P-ILAYTAGAEIEQLQ 231 (253)
Q Consensus 167 ----~~~~~~------~~~~i~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~-~-~~~~~~~~~v~~~~ 231 (253)
.+.+.- ...+|..+.|+|-+. ..|++-..|+.|++||+.... .|...... . .........|.+++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence 112221 246799999999653 289999999999999998732 22100000 0 01112236788999
Q ss_pred EcCCCCceEEEE--cCCcEE
Q 035558 232 WSSSQPDWVAIA--FSTKLQ 249 (253)
Q Consensus 232 ~~~~~~~~~~~~--~~~~i~ 249 (253)
|.+++-.+.+.. .+|.|.
T Consensus 187 Fg~~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEE
T ss_pred EcCCCcEEEEEecCCCCCEE
Confidence 999776566644 556654
No 305
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.60 E-value=0.014 Score=44.94 Aligned_cols=185 Identities=14% Similarity=0.163 Sum_probs=108.1
Q ss_pred CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecC---CCCC---EEEEEeC---CCeEEEEec--
Q 035558 5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNE---AEPR---RIGTSSI---DTTCTIWDI-- 72 (253)
Q Consensus 5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~---~l~~~~~---dg~i~vwd~-- 72 (253)
..+|++..+ .+.+||+.. +.+..+.. +.++.+..-| -.+. ++++... +++|.+|++
T Consensus 41 s~ii~t~k~~gL~Vydl~G-----~~l~~~~~-------g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp 108 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSLDG-----KMLHSYNT-------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG 108 (355)
T ss_dssp CEEEEEETTTEEEEEETTS-----CEEEEECC-------SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECT
T ss_pred cEEEEEcCCCCEEEEcCCC-----cEEEEccC-------CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECC
Confidence 334444445 999999955 66666653 2355555542 1122 2333333 578999976
Q ss_pred cCceeeeeeec------cc-ccEEEEEe--c--CCC-eEEEEeCCCcEEEEEcCC---CCC-eeeeeccCCCCCCeeEEE
Q 035558 73 EREAVDTQLIA------HD-KEVYDIAW--G--GVG-VFASVSADGSVRVFDLRD---KEH-STIIYESSEPDTPLVRLG 136 (253)
Q Consensus 73 ~~~~~~~~~~~------~~-~~v~~~~~--~--~~~-~l~~~~~dg~i~i~d~~~---~~~-~~~~~~~~~~~~~i~~~~ 136 (253)
.+++ +..+.. .. ..+..+++ + .+. +++....+|.+..|++.. +.. .+.+..... .+.+-.+.
T Consensus 109 ~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~Egcv 186 (355)
T 3amr_A 109 KNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMA 186 (355)
T ss_dssp TTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEE
T ss_pred CCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEE
Confidence 3333 333311 11 45666777 4 333 677788899999999943 211 122222222 23678888
Q ss_pred eeCCCCCEEEEEEeCCCeEEEEECCCCC----CCeeeec-cc-ccceeEEEE--ecCCCCeEEEec-CCCcEEEEecc
Q 035558 137 WNKQDPRYMATIIMDSAKVVVLDIRFPT----LPVVELQ-RH-QASVNAIAW--APHSSCHICTAG-DDSQALIWDLS 205 (253)
Q Consensus 137 ~~~~~~~~l~~~~~~~~~i~~~d~~~~~----~~~~~~~-~~-~~~i~~~~~--~~~~~~~l~~~~-~dg~i~iwd~~ 205 (253)
..+ ....|+++-.+.+ |..||.+-.. ..+..+. ++ ...+..|++ .+++..+|++++ .+++..+||.+
T Consensus 187 vDd-~~g~Lyv~eEd~G-Iw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 187 ADD-EYGRLYIAEEDEA-IWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EET-TTTEEEEEETTTE-EEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EcC-CCCeEEEecccce-EEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 988 7778888888877 8888865221 1122221 11 236778887 455532555555 67899999997
No 306
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.53 E-value=0.047 Score=49.28 Aligned_cols=221 Identities=9% Similarity=0.033 Sum_probs=123.4
Q ss_pred cEEEEEccCCccccceeeeecCCCCccccCCeeEEE---ecCCCCCEEEEEe----------CCCeEEEEeccCceeeee
Q 035558 14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFD---WNEAEPRRIGTSS----------IDTTCTIWDIEREAVDTQ 80 (253)
Q Consensus 14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~ 80 (253)
.|++.|..+. +.+..++-... ..+.+++ |......+++.|+ ..|.|+++++..++....
T Consensus 808 ~i~lidp~t~----~~i~~~~l~~n----E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv 879 (1158)
T 3ei3_A 808 NLLIIDQHTF----EVLHAHQFLQN----EYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTV 879 (1158)
T ss_dssp EEEEEETTTC----CEEEEEECCTT----EEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEE
T ss_pred EEEEEeCCCC----eEEEEEeCCCC----cceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEE
Confidence 6778877664 44333322221 2344444 4312347888886 357899999875442222
Q ss_pred ee-cccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558 81 LI-AHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159 (253)
Q Consensus 81 ~~-~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d 159 (253)
.+ ..+++|++++-.++.+++.. ..+|++|++...+....... ... .+..+.... .++++++|..-.+ +.++.
T Consensus 880 ~~~~v~g~v~al~~~~g~Lla~i--g~~l~vy~l~~~~~L~~~~~--~~~-~i~~~~l~~-~~~~I~vgD~~~S-v~~~~ 952 (1158)
T 3ei3_A 880 AEKEVKGAVYSMVEFNGKLLASI--NSTVRLYEWTTEKELRTECN--HYN-NIMALYLKT-KGDFILVGDLMRS-VLLLA 952 (1158)
T ss_dssp EEEEESSCEEEEEEETTEEEEEE--TTEEEEEEECTTSCEEEEEE--ECC-CSCEEEEEE-ETTEEEEEESSBC-EEEEE
T ss_pred EEEEcCCcCEEEeeeCCEEEEEc--CCEEEEEECCCCceEEEEee--ccc-cEEEEEEec-cCCEEEEEEhhhe-EEEEE
Confidence 11 34678888876556444443 47899999987653331111 111 233223322 5678888887777 77765
Q ss_pred CCCCCCCeeeec--ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCC--CCeeeccCCCceeEEE---E
Q 035558 160 IRFPTLPVVELQ--RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGL--DPILAYTAGAEIEQLQ---W 232 (253)
Q Consensus 160 ~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~v~~~~---~ 232 (253)
.+.....+..+. .+...++++.+-.++ .++.+..+|.+.+.............. .....+..+..|+++. +
T Consensus 953 y~~~~~~L~~~a~D~~~~~vta~~~ld~~--t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl 1030 (1158)
T 3ei3_A 953 YKPMEGNFEEIARDFNPNWMSAVEILDDD--NFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSL 1030 (1158)
T ss_dssp EETTTTEEEEEEECCSCBCEEEEEEEETT--EEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCS
T ss_pred EEcCCCeEEEEEeecccccEEEEEEEccC--cEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeee
Confidence 544332233333 244568888887664 677889999999998765321110000 0111222366677765 3
Q ss_pred cCCC---------CceEEEEcCCcEEEE
Q 035558 233 SSSQ---------PDWVAIAFSTKLQIL 251 (253)
Q Consensus 233 ~~~~---------~~~~~~~~~~~i~vw 251 (253)
.+.+ ..++-++.+|.|-++
T Consensus 1031 ~~~~~~~~~~~~~~~il~~T~~GsIg~l 1058 (1158)
T 3ei3_A 1031 VMQNLGETSTPTQGSVLFGTVNGMIGLV 1058 (1158)
T ss_dssp CCC-------CEEEEEEEEETTSCEEEE
T ss_pred ecCCCccccccccceEEEEecCCEEEEE
Confidence 3322 236677788877654
No 307
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.49 E-value=0.016 Score=43.83 Aligned_cols=147 Identities=14% Similarity=0.092 Sum_probs=76.0
Q ss_pred CCCEEEEEeCC------CeEEEEeccCceeee--eeecccccEEEEEecCCCeEEEEeC---------CCcEEEEEcCCC
Q 035558 54 EPRRIGTSSID------TTCTIWDIEREAVDT--QLIAHDKEVYDIAWGGVGVFASVSA---------DGSVRVFDLRDK 116 (253)
Q Consensus 54 ~~~~l~~~~~d------g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~ 116 (253)
++.+++.|+.+ ..+.+||..+.+-.. .+....... +++..++.+++.|+. -..+.+||+.+.
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 179 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSH-GMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE 179 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEETTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCccee-EEEEECCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence 46677777755 458899988765222 222111111 122226677777764 345889999877
Q ss_pred CCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC----CeEEEEECCCCC-CCeeeecccccceeEEEEecCCCCeEE
Q 035558 117 EHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS----AKVVVLDIRFPT-LPVVELQRHQASVNAIAWAPHSSCHIC 191 (253)
Q Consensus 117 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~----~~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~ 191 (253)
+-. .+....... .-.++... ++.+++.|+.++ ..+.+||+.+.. ..+..+.........+.+ ++ ++++
T Consensus 180 ~W~-~~~~~p~~r-~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~i~v 252 (306)
T 3ii7_A 180 TWT-ELCPMIEAR-KNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GS-IVYV 252 (306)
T ss_dssp EEE-EECCCSSCC-BSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TT-EEEE
T ss_pred eEE-ECCCccchh-hcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CC-EEEE
Confidence 422 222222111 11222222 567777776543 138899987643 111112111112222222 44 5777
Q ss_pred EecCC-----CcEEEEeccCCC
Q 035558 192 TAGDD-----SQALIWDLSSMG 208 (253)
Q Consensus 192 ~~~~d-----g~i~iwd~~~~~ 208 (253)
.|+.+ ..+.+||+.+.+
T Consensus 253 ~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 253 LAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EECBCSSSBCCEEEEEETTTTE
T ss_pred EeCcCCCeeeeeEEEEcCCCCe
Confidence 88754 567888887754
No 308
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.46 E-value=0.023 Score=44.10 Aligned_cols=222 Identities=9% Similarity=0.002 Sum_probs=112.6
Q ss_pred CCceEEeecC-cEEEEEccCCccccceeeeec---CCCCccccCCeeEEEecCCC----CCEEEEEeC---C----CeEE
Q 035558 4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLN---GNKNSEYCGPLTSFDWNEAE----PRRIGTSSI---D----TTCT 68 (253)
Q Consensus 4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~---d----g~i~ 68 (253)
+++++++-.. .|++++. .+ . +.+..+. ... .....|+++ ++ +.++++-+. + ..|.
T Consensus 39 dG~l~V~e~~g~I~~~d~-~G-~--~~~~~~~v~~~g~-----~g~~gia~~-pdf~~~g~lyv~~~~~~~~~~~~~~v~ 108 (354)
T 3a9g_A 39 GGRYLVTERPGRLVLISP-SG-K--KLVASFDVANVGE-----AGLLGLALH-PEFPKKSWVYLYASYFAEGGHIRNRVI 108 (354)
T ss_dssp TTEEEEEETTTEEEEECS-SC-E--EEEEECCCCCSTT-----CSEEEEEEC-TTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred CCeEEEEeCCCEEEEEeC-CC-c--eEeeccceeecCC-----CceeeEEeC-CCCCcCCEEEEEEeccCCCCCcceEEE
Confidence 5677777665 8888863 32 1 2222221 111 457899999 54 444444332 3 5677
Q ss_pred EEeccCc-------ee-eeeeec-ccccEEEEEec-CCCeEEEEeCC-------------CcEEEEEcCCCC-------C
Q 035558 69 IWDIERE-------AV-DTQLIA-HDKEVYDIAWG-GVGVFASVSAD-------------GSVRVFDLRDKE-------H 118 (253)
Q Consensus 69 vwd~~~~-------~~-~~~~~~-~~~~v~~~~~~-~~~~l~~~~~d-------------g~i~i~d~~~~~-------~ 118 (253)
.++.... +. +..+.. .......|+|. ++.++++.+.. |.|.-++....- .
T Consensus 109 r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~ 188 (354)
T 3a9g_A 109 RGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPN 188 (354)
T ss_dssp EEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTT
T ss_pred EEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCC
Confidence 7776543 11 111221 11134678898 88766664431 445555543220 0
Q ss_pred eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC--eEEEEECCC---------------CCCCeeeecccccceeEEE
Q 035558 119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA--KVVVLDIRF---------------PTLPVVELQRHQASVNAIA 181 (253)
Q Consensus 119 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~--~i~~~d~~~---------------~~~~~~~~~~~~~~i~~~~ 181 (253)
..+... ++. ....++|+|.++.++++-...+. .|.+..... ...++..+.........++
T Consensus 189 ~~i~a~--G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~ 265 (354)
T 3a9g_A 189 SPIWSY--GHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGAS 265 (354)
T ss_dssp CCEEEE--CCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEE
T ss_pred CcEEEE--ccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceE
Confidence 011111 111 35679999855555554322211 244332111 0123333311224567888
Q ss_pred Ee-------cCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE
Q 035558 182 WA-------PHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI 242 (253)
Q Consensus 182 ~~-------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 242 (253)
|. .++ .++++.-..+.|...++....... .....+.+....+..+++.|+|..+++.
T Consensus 266 ~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g~~~---~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 266 FVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNMEVR---KISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp ECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGGCEE---EEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred EECCCCCcccCC-cEEEEEcCCCEEEEEEECCCCccc---ceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 83 456 577777777888888887532111 0001122235678999999999755554
No 309
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.45 E-value=0.021 Score=43.35 Aligned_cols=185 Identities=9% Similarity=-0.045 Sum_probs=90.8
Q ss_pred eEEeecCcEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC-----C------CeEEEEeccCc
Q 035558 7 LLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI-----D------TTCTIWDIERE 75 (253)
Q Consensus 7 ~l~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----d------g~i~vwd~~~~ 75 (253)
+++.|++.+.+||..+. .+.. ..+..... ..-.+++. .++.+++.|+. . ..+.+||..+.
T Consensus 7 l~~~GG~~~~~yd~~~~--~W~~-~~~~~p~~----r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~ 77 (315)
T 4asc_A 7 IFMISEEGAVAYDPAAN--ECYC-ASLSSQVP----KNHVSLVT--KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS 77 (315)
T ss_dssp EEEEETTEEEEEETTTT--EEEE-EECCCCSC----SSEEEEEC--TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTT
T ss_pred EEEEcCCceEEECCCCC--eEec-CCCCCCCC----ccceEEEE--ECCEEEEEcCcccCCCCCccccccceEEecCCCC
Confidence 44555568999999884 2222 22221110 11122222 46777777773 1 12778888876
Q ss_pred eeee--eeecccccEEEEEecCCCeEEEEeCC--------CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEE
Q 035558 76 AVDT--QLIAHDKEVYDIAWGGVGVFASVSAD--------GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYM 145 (253)
Q Consensus 76 ~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 145 (253)
+-.. .+...... .+++..++.+++.|+.+ ..+.+||..+.+- ..+...+.....- +++.. ++.++
T Consensus 78 ~W~~~~~~p~~r~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~-~~~~~--~~~iy 152 (315)
T 4asc_A 78 EWLGMPPLPSPRCL-FGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKW-GESDPLPYVVYGH-TVLSH--MDLVY 152 (315)
T ss_dssp EEEECCCBSSCEES-CEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEE-EECCCCSSCCBSC-EEEEE--TTEEE
T ss_pred eEEECCCCCcchhc-eeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcE-eECCCCCCcccce-eEEEE--CCEEE
Confidence 5221 22111111 11222267777777742 4588999987642 1221211211111 22222 56777
Q ss_pred EEEEe-CC----CeEEEEECCCCC-CCeeeecccccceeEEEEecCCCCeEEEecCCC-----cEEEEeccCCC
Q 035558 146 ATIIM-DS----AKVVVLDIRFPT-LPVVELQRHQASVNAIAWAPHSSCHICTAGDDS-----QALIWDLSSMG 208 (253)
Q Consensus 146 ~~~~~-~~----~~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~ 208 (253)
+.|+. ++ ..+.+||..+.. ..+..+...... .+++.. ++ ++++.|+.++ .+.+||+.+..
T Consensus 153 v~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 153 VIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSL-FGATVH-DG-RIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp EECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-TT-EEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred EEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhc-eEEEEE-CC-EEEEEeccCCCCccceEEEEECCCCe
Confidence 77776 21 138899987643 111111111111 122222 44 5777777554 57888887754
No 310
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.45 E-value=0.021 Score=43.25 Aligned_cols=187 Identities=9% Similarity=0.052 Sum_probs=92.2
Q ss_pred CCceEEeec---C---cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC----C-----CeEE
Q 035558 4 KPDLLATSS---D---FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI----D-----TTCT 68 (253)
Q Consensus 4 ~~~~l~~~~---~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----d-----g~i~ 68 (253)
++.+++.|+ . .+.+||..+. .+..+..+.... ..- +++. .++.+++.|+. + ..+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r-----~~~-~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~ 93 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNG--TWLRLADLQVPR-----SGL-AGCV--VGGLLYAVGGRNNSPDGNTDSSALD 93 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTT--EEEECCCCSSCC-----BSC-EEEE--ETTEEEEECCEEEETTEEEECCCEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCC--eEeECCCCCccc-----ccc-eEEE--ECCEEEEECCCcCCCCCCeecceEE
Confidence 345666665 2 7888888773 222222221111 111 2222 24667777665 2 3588
Q ss_pred EEeccCceee--eeeecccccEEEEEecCCCeEEEEeCC-----CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC
Q 035558 69 IWDIEREAVD--TQLIAHDKEVYDIAWGGVGVFASVSAD-----GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD 141 (253)
Q Consensus 69 vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 141 (253)
+||+.+.+-. ..+....... +++..++.+++.|+.+ ..+.+||+.+.+-. .+...+.....- +++.. +
T Consensus 94 ~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~~~-~~~~~--~ 168 (308)
T 1zgk_A 94 CYNPMTNQWSPCAPMSVPRNRI-GVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWH-LVAPMLTRRIGV-GVAVL--N 168 (308)
T ss_dssp EEETTTTEEEECCCCSSCCBTC-EEEEETTEEEEECCEETTEECCCEEEEETTTTEEE-ECCCCSSCCBSC-EEEEE--T
T ss_pred EECCCCCeEeECCCCCcCcccc-EEEEECCEEEEEcCCCCCcccccEEEECCCCCeEe-ECCCCCccccce-EEEEE--C
Confidence 8898776522 2222111111 1222267777777643 35888998876421 111111111111 22222 5
Q ss_pred CCEEEEEEeCC----CeEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEEecCC-----CcEEEEeccCCC
Q 035558 142 PRYMATIIMDS----AKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICTAGDD-----SQALIWDLSSMG 208 (253)
Q Consensus 142 ~~~l~~~~~~~----~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 208 (253)
+.+++.|+.++ ..+.+||+.+..- .+..+...... .+++.. ++ ++++.|+.+ ..+.+||+.+..
T Consensus 169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSG-AGVCVL-HN-CIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-TT-EEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCcccc-ceEEEE-CC-EEEEEeCCCCCCccceEEEEeCCCCc
Confidence 67777776543 2388999876431 01111111111 122222 44 577777754 568899988754
No 311
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.44 E-value=0.021 Score=43.07 Aligned_cols=147 Identities=14% Similarity=0.123 Sum_probs=75.4
Q ss_pred CCCEEEEEeCCC-----eEEEEeccCceee--eeeecccccEEEEEecCCCeEEEEeCC-------CcEEEEEcCCCCCe
Q 035558 54 EPRRIGTSSIDT-----TCTIWDIEREAVD--TQLIAHDKEVYDIAWGGVGVFASVSAD-------GSVRVFDLRDKEHS 119 (253)
Q Consensus 54 ~~~~l~~~~~dg-----~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~ 119 (253)
++.+++.|+.++ .+.+||+.+.+-. ..+...... .+++..++.+++.|+.+ ..+.+||+.+.+-.
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 186 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS-VGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWT 186 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC-ceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence 467777777553 5778888776522 222211111 12222266777777643 35889998876422
Q ss_pred eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC----CeEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEEec
Q 035558 120 TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS----AKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICTAG 194 (253)
Q Consensus 120 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~----~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 194 (253)
. +.......... +++.. ++.+++.|+.++ ..+.+||..+..- .+..+...... .+++.. ++ ++++.|+
T Consensus 187 ~-~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~~-~~-~i~v~GG 259 (302)
T 2xn4_A 187 Y-IAEMSTRRSGA-GVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN-AGVCAV-NG-LLYVVGG 259 (302)
T ss_dssp E-ECCCSSCCBSC-EEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TT-EEEEECC
T ss_pred E-CCCCccccccc-cEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc-CeEEEE-CC-EEEEECC
Confidence 2 22222211112 22222 567778877653 2388999876431 11111111111 122222 44 5777777
Q ss_pred CCC-----cEEEEeccCCC
Q 035558 195 DDS-----QALIWDLSSMG 208 (253)
Q Consensus 195 ~dg-----~i~iwd~~~~~ 208 (253)
.++ .+.+||+.+..
T Consensus 260 ~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 260 DDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp BCSSSBCCCEEEEETTTTE
T ss_pred cCCCcccccEEEEcCCCCe
Confidence 553 48888887754
No 312
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.44 E-value=0.021 Score=44.18 Aligned_cols=145 Identities=9% Similarity=-0.029 Sum_probs=72.6
Q ss_pred CCceEEeec-C--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC-C---------CeEEEE
Q 035558 4 KPDLLATSS-D--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI-D---------TTCTIW 70 (253)
Q Consensus 4 ~~~~l~~~~-~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d---------g~i~vw 70 (253)
++.+++.|+ + .+.+||+......+..+..+..... ..- +++. .++.+++.|+. + ..+.+|
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R----~~~-~~~~--~~~~lyv~GG~~~~~~~~~~~~~~v~~y 91 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPR----DQA-TSAF--IDGNLYVFGGIGKNSEGLTQVFNDVHKY 91 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCC----BSC-EEEE--ETTEEEEECCEEECTTSCEEECCCEEEE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcC----ccc-eEEE--ECCEEEEEcCCCCCCCccceeeccEEEE
Confidence 445556665 2 7888888642123333333321110 111 2222 24667777765 2 368889
Q ss_pred eccCceee--eeee-cccccEEEEEecCCCeEEEEeCC---------------------------------------CcE
Q 035558 71 DIEREAVD--TQLI-AHDKEVYDIAWGGVGVFASVSAD---------------------------------------GSV 108 (253)
Q Consensus 71 d~~~~~~~--~~~~-~~~~~v~~~~~~~~~~l~~~~~d---------------------------------------g~i 108 (253)
|+.+.+-. ..+. ........+. .++.+++.|+.+ ..+
T Consensus 92 d~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (357)
T 2uvk_A 92 NPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFL 170 (357)
T ss_dssp ETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEE
T ss_pred eCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccE
Confidence 98876522 2222 1111112222 267788888765 468
Q ss_pred EEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC------CCeEEEEEC
Q 035558 109 RVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMD------SAKVVVLDI 160 (253)
Q Consensus 109 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~------~~~i~~~d~ 160 (253)
.+||..+.+-.. +.........-.+++.. ++.+++.|+.+ .. +..||+
T Consensus 171 ~~yd~~~~~W~~-~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~-v~~~d~ 224 (357)
T 2uvk_A 171 LSFDPSTQQWSY-AGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDA-VFELDF 224 (357)
T ss_dssp EEEETTTTEEEE-EEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCC-EEEEEC
T ss_pred EEEeCCCCcEEE-CCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCc-eEEEEe
Confidence 899998765322 22222111111233333 56677776642 23 777887
No 313
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.42 E-value=0.022 Score=42.83 Aligned_cols=147 Identities=12% Similarity=0.059 Sum_probs=75.3
Q ss_pred CCCEEEEEeCC-----CeEEEEeccCceeee--eeecccccEEEEEecCCCeEEEEeCC-----CcEEEEEcCCCCCeee
Q 035558 54 EPRRIGTSSID-----TTCTIWDIEREAVDT--QLIAHDKEVYDIAWGGVGVFASVSAD-----GSVRVFDLRDKEHSTI 121 (253)
Q Consensus 54 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~ 121 (253)
++.+++.|+.+ ..+.+||+.+.+-.. .+...... .+++..++.+++.|+.+ ..+..||+.+.+-. .
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~-~ 189 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG-AGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWT-N 189 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS-CEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEE-E
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCccc-ceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEE-e
Confidence 46677777643 368889988765222 22211111 11222267777777754 45889998876522 2
Q ss_pred eeccCCCCCCeeEEEeeCCCCCEEEEEEeCC----CeEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEEecCC
Q 035558 122 IYESSEPDTPLVRLGWNKQDPRYMATIIMDS----AKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICTAGDD 196 (253)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~----~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 196 (253)
+.......... ++... ++.+++.|+.++ ..+.+||+.+..- .+..+...... .+++.. ++ ++++.|+.+
T Consensus 190 ~~~~p~~r~~~-~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~-~i~v~GG~~ 263 (301)
T 2vpj_A 190 VTPMATKRSGA-GVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY-VGATVL-RG-RLYAIAGYD 263 (301)
T ss_dssp ECCCSSCCBSC-EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TT-EEEEECCBC
T ss_pred CCCCCcccccc-eEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccc-eeEEEE-CC-EEEEEcCcC
Confidence 22222211111 22222 567777777642 2389999986531 11111111111 122222 44 577777755
Q ss_pred -----CcEEEEeccCCC
Q 035558 197 -----SQALIWDLSSMG 208 (253)
Q Consensus 197 -----g~i~iwd~~~~~ 208 (253)
..+.+||+++.+
T Consensus 264 ~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 264 GNSLLSSIECYDPIIDS 280 (301)
T ss_dssp SSSBEEEEEEEETTTTE
T ss_pred CCcccccEEEEcCCCCe
Confidence 356778877644
No 314
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.37 E-value=0.028 Score=42.86 Aligned_cols=220 Identities=9% Similarity=0.120 Sum_probs=124.6
Q ss_pred CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-eeeeeee
Q 035558 5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-AVDTQLI 82 (253)
Q Consensus 5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~ 82 (253)
..++|--.+ .++++|++.. ..++...-. .+|.--.|- +.+.|+..+. ..|+-|+++.. .+.+.+.
T Consensus 78 ~~ViALrag~~LQiFnletK----~klks~~~~------e~VvfWkWi--s~~~L~lVT~-taVyHWs~~~~s~P~kvFd 144 (365)
T 2xzh_A 78 SKVIALKAGKTLQIFNIEMK----SKMKAHTMT------DDVTFWKWI--SLNTVALVTD-NAVYHWSMEGESQPVKMFD 144 (365)
T ss_dssp SSEEEEEETTEEEEEETTTT----EEEEEEECS------SCEEEEEEC--SSSEEEEEES-SEEEEEESSTTCCCEEEEE
T ss_pred ccEEEEecCCeEEEechHHh----hhhcceecC------CccEEEEec--CCCeEEEEcC-CcEEEEcccCCCCCceeee
Confidence 345555445 9999999985 455554443 467777885 5667777664 58999999753 3445554
Q ss_pred ccc----ccEEEEEec-CCCeEEEEe-------CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEe--eCCCCCEEEEE
Q 035558 83 AHD----KEVYDIAWG-GVGVFASVS-------ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGW--NKQDPRYMATI 148 (253)
Q Consensus 83 ~~~----~~v~~~~~~-~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~l~~~ 148 (253)
.|. ..|-.-..+ +.+.++..+ -.|.+.+|..+.+. -....+|......+.+ ++....+++.+
T Consensus 145 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~----sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa 220 (365)
T 2xzh_A 145 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV----SQPIEGHAASFAQFKMEGNAEESTLFCFA 220 (365)
T ss_dssp CCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE----EEEECCSEEEEEEECCTTCSSCEEEEEEE
T ss_pred cchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc----cceeeeeeeeeEEEecCCCCCCceEEEEE
Confidence 443 345444445 666555433 23678888887653 1112233211111211 11112344444
Q ss_pred EeC--CCeEEEEECCCC--CC-Ce--e---eec---ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCC
Q 035558 149 IMD--SAKVVVLDIRFP--TL-PV--V---ELQ---RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGL 215 (253)
Q Consensus 149 ~~~--~~~i~~~d~~~~--~~-~~--~---~~~---~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 215 (253)
... |..+++.++... .. +. + .+. ...+..-++..++.-+ .++.-..-|.|.+||++++....
T Consensus 221 ~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kyg-viyviTK~G~ihlyDleTgt~i~---- 295 (365)
T 2xzh_A 221 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIY---- 295 (365)
T ss_dssp EEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEE----
T ss_pred EecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCC-EEEEEeCCcEEEEEEcccCcEEE----
Confidence 332 234999998553 11 11 1 111 1234566788888763 88888899999999999998554
Q ss_pred CCeeeccCCCceeEEEEcCCCCceEEEEcCCcEE
Q 035558 216 DPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQ 249 (253)
Q Consensus 216 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~ 249 (253)
...-...+|..-+-+.....+++....|.+.
T Consensus 296 ---~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl 326 (365)
T 2xzh_A 296 ---MNRISGETIFVTAPHEATAGIIGVNRKGQVL 326 (365)
T ss_dssp ---EEECCSSCEEEEEEEGGGTEEEEEETTCEEE
T ss_pred ---EeccCCCceEEecccCCCCcEEEEcCCCEEE
Confidence 2333344554444444434566666666543
No 315
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.36 E-value=0.027 Score=42.46 Aligned_cols=186 Identities=11% Similarity=0.131 Sum_probs=92.0
Q ss_pred CceEEeec-C-----cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCC-----eEEEEecc
Q 035558 5 PDLLATSS-D-----FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT-----TCTIWDIE 73 (253)
Q Consensus 5 ~~~l~~~~-~-----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~ 73 (253)
+.+++.|+ + .+.+||+.+. .+..+..+.... .. .+++. .++.+++.|+.++ .+.+||..
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r-----~~-~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~ 85 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEE--RWHQVAELPSRR-----CR-AGMVY--MAGLVFAVGGFNGSLRVRTVDSYDPV 85 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTT--EEEEECCCSSCC-----BS-CEEEE--ETTEEEEESCBCSSSBCCCEEEEETT
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCC--cEeEcccCCccc-----cc-ceEEE--ECCEEEEEeCcCCCccccceEEECCC
Confidence 34555555 1 6788888773 222222222111 11 12222 2466777776543 58889988
Q ss_pred Cceee--eeeecccccEEEEEecCCCeEEEEeCCC-----cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEE
Q 035558 74 REAVD--TQLIAHDKEVYDIAWGGVGVFASVSADG-----SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMA 146 (253)
Q Consensus 74 ~~~~~--~~~~~~~~~v~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 146 (253)
+.+-. ..+...... .+++..++.+++.|+.++ .+.+||+.+.+-. .+......... .+++.. ++.+++
T Consensus 86 ~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~-~~~~~~--~~~iyv 160 (302)
T 2xn4_A 86 KDQWTSVANMRDRRST-LGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWF-HVAPMNTRRSS-VGVGVV--GGLLYA 160 (302)
T ss_dssp TTEEEEECCCSSCCBS-CEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEE-EECCCSSCCBS-CEEEEE--TTEEEE
T ss_pred CCceeeCCCCCccccc-eEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEe-ecCCCCCcccC-ceEEEE--CCEEEE
Confidence 76522 222211111 122222677778887653 4778888776422 22222221111 222222 567777
Q ss_pred EEEeCC------CeEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEEecCC-----CcEEEEeccCCC
Q 035558 147 TIIMDS------AKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICTAGDD-----SQALIWDLSSMG 208 (253)
Q Consensus 147 ~~~~~~------~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 208 (253)
.|+.++ ..+.+||..+..- .+..+...... .+++.. ++ ++++.|+.+ ..+.+||+.+..
T Consensus 161 ~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 161 VGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSG-AGVGVL-NN-LLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp ECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TT-EEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred EeCCCCCCCccccEEEEEeCCCCcEEECCCCcccccc-ccEEEE-CC-EEEEECCCCCCcccceEEEEeCCCCC
Confidence 776532 1288999876431 11111111111 122222 34 577777754 468899987754
No 316
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.25 E-value=0.036 Score=43.00 Aligned_cols=138 Identities=13% Similarity=0.051 Sum_probs=74.8
Q ss_pred CCCcEEEEEcCCCCC-eeeeecc----CCCCCCeeEEEeeCC-CCC-EEEEEEeC--CCeEEEEECCCCCCC---eeeec
Q 035558 104 ADGSVRVFDLRDKEH-STIIYES----SEPDTPLVRLGWNKQ-DPR-YMATIIMD--SAKVVVLDIRFPTLP---VVELQ 171 (253)
Q Consensus 104 ~dg~i~i~d~~~~~~-~~~~~~~----~~~~~~i~~~~~~~~-~~~-~l~~~~~~--~~~i~~~d~~~~~~~---~~~~~ 171 (253)
.+|.|.++|..+... ...+... .........+.+.++ ++. +|+++... +..|.+|++...... +..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 689999999974321 1122111 111235566666552 232 34444332 345888887654322 22222
Q ss_pred cc-ccceeEEEEecCCCCeEEEec---C--------------CCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEc
Q 035558 172 RH-QASVNAIAWAPHSSCHICTAG---D--------------DSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWS 233 (253)
Q Consensus 172 ~~-~~~i~~~~~~~~~~~~l~~~~---~--------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 233 (253)
+. -...+.+.+.++| .+.++.. . .|.|.-+|. .+ . ......-...+.++|+
T Consensus 161 g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~-------~~~~~~l~~pNGia~s 229 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-V-------RVVAEGFDFANGINIS 229 (355)
T ss_dssp CTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-C-------EEEEEEESSEEEEEEC
T ss_pred cCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-E-------EEeecCCcccCcceEC
Confidence 21 2357899999998 5666654 1 234444443 21 1 2333334567899999
Q ss_pred CCCCceEEE-EcCCcEEEEE
Q 035558 234 SSQPDWVAI-AFSTKLQILR 252 (253)
Q Consensus 234 ~~~~~~~~~-~~~~~i~vw~ 252 (253)
|+++.++.+ +..+.|..|+
T Consensus 230 pDg~~lYvadt~~~~I~~~~ 249 (355)
T 3sre_A 230 PDGKYVYIAELLAHKIHVYE 249 (355)
T ss_dssp TTSSEEEEEEGGGTEEEEEE
T ss_pred CCCCEEEEEeCCCCeEEEEE
Confidence 999866644 4566777665
No 317
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.09 E-value=0.05 Score=41.28 Aligned_cols=147 Identities=9% Similarity=-0.023 Sum_probs=74.6
Q ss_pred CCCEEEEEeCC--------CeEEEEeccCcee--eeeeecccccEEEEEecCCCeEEEEeC-C-----CcEEEEEcCCCC
Q 035558 54 EPRRIGTSSID--------TTCTIWDIEREAV--DTQLIAHDKEVYDIAWGGVGVFASVSA-D-----GSVRVFDLRDKE 117 (253)
Q Consensus 54 ~~~~l~~~~~d--------g~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~l~~~~~-d-----g~i~i~d~~~~~ 117 (253)
++.+++.|+.+ ..+.+||..+.+- +..+...... .+++..++.+++.|+. + ..+.+||..+.+
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFE 176 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence 46666777632 3588899887652 2222211111 1122226677777776 2 468899988764
Q ss_pred CeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC----eEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEE
Q 035558 118 HSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA----KVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICT 192 (253)
Q Consensus 118 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~----~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~ 192 (253)
-. .+...+...... +++.. ++.+++.|+.++. .+.+||..+..- .+..+...... .+++.. ++ ++++.
T Consensus 177 W~-~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~-~l~v~ 249 (315)
T 4asc_A 177 WK-ELAPMQTARSLF-GATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSS-LSLVSL-VG-TLYAI 249 (315)
T ss_dssp EE-ECCCCSSCCBSC-EEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TT-EEEEE
T ss_pred EE-ECCCCCCchhce-EEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccc-eeEEEE-CC-EEEEE
Confidence 21 121111111111 22222 6678888877553 488899876531 11111111111 122222 34 57777
Q ss_pred ecCC--------------CcEEEEeccCCC
Q 035558 193 AGDD--------------SQALIWDLSSMG 208 (253)
Q Consensus 193 ~~~d--------------g~i~iwd~~~~~ 208 (253)
|+.+ ..+.+||+.+.+
T Consensus 250 GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 250 GGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred CCccccCcCCccccccccCcEEEecCCCCh
Confidence 7753 236678877654
No 318
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.08 E-value=0.075 Score=42.23 Aligned_cols=219 Identities=9% Similarity=0.133 Sum_probs=126.2
Q ss_pred ceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-eeeeeeec
Q 035558 6 DLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-AVDTQLIA 83 (253)
Q Consensus 6 ~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~ 83 (253)
.++|--.+ +++|+|++.. ..++...-. ..|.--.|- +.+.|+..+ +..|+-|+++.. .+.+.+..
T Consensus 78 ~iiALrag~~lQiFnle~K----~klks~~~~------e~VvfWkWi--s~~~l~lVT-~taVyHWsi~~~s~P~kvFdR 144 (494)
T 1bpo_A 78 KVIALKAGKTLQIFNIEMK----SKMKAHTMT------DDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDR 144 (494)
T ss_dssp SCEEEEETTEEEEEETTTT----EEEEEEECS------SCCCEEEEE--ETTEEEEEC-SSEEEEEESSSSCCCEEEEEC
T ss_pred cEEEEecCCeEEEEchHHh----hhhcceecC------CCceEEEec--CCCeEEEEc-CCeeEEecccCCCCchhheec
Confidence 45555445 9999999985 445554443 457777785 466677665 468999999753 35555544
Q ss_pred cc----ccEEEEEec-CCCeEEEEe-------CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEee--CCCCCEEEEEE
Q 035558 84 HD----KEVYDIAWG-GVGVFASVS-------ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWN--KQDPRYMATII 149 (253)
Q Consensus 84 ~~----~~v~~~~~~-~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~ 149 (253)
|. ..|-.-..+ +.++++..+ -.|.+.+|..+.+.. ....+|......+.+. +....++..+.
T Consensus 145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s----Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~ 220 (494)
T 1bpo_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS----QPIEGHAASFAQFKMEGNAEESTLFCFAV 220 (494)
T ss_dssp CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE----EEECCSEEEEEEEECTTCSSEEEEEEEEE
T ss_pred chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc----chheeeeeeeEEEecCCCCCCceEEEEEE
Confidence 43 345444555 666655433 247788998876641 1122332222222221 11112344443
Q ss_pred eC--CCeEEEEECCCC--CC-Ce--ee---ec---ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCC
Q 035558 150 MD--SAKVVVLDIRFP--TL-PV--VE---LQ---RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLD 216 (253)
Q Consensus 150 ~~--~~~i~~~d~~~~--~~-~~--~~---~~---~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 216 (253)
.. |..+++.++... .. +. +. +. ...+...++..++.-+ .++.-..-|.|.+||++++....
T Consensus 221 r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt~i~----- 294 (494)
T 1bpo_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIY----- 294 (494)
T ss_dssp CSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEE-----
T ss_pred ecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC-EEEEEecCceEEEEecccceeee-----
Confidence 32 334999998654 11 11 11 11 1234566788888774 88888899999999999988554
Q ss_pred CeeeccCCCceeEEEEcCCCCceEEEEcCCcEE
Q 035558 217 PILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQ 249 (253)
Q Consensus 217 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~ 249 (253)
...-...+|..-+-+.....+++....|.|.
T Consensus 295 --~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl 325 (494)
T 1bpo_A 295 --MNRISGETIFVTAPHEATAGIIGVNRKGQVL 325 (494)
T ss_dssp --EEECCSSCEEEEEEETTTTEEEEEETTCEEE
T ss_pred --eecccCCceEEecccCCCCcEEEEccCceEE
Confidence 3333345555445544444566666666543
No 319
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.06 E-value=0.17 Score=46.35 Aligned_cols=189 Identities=10% Similarity=0.137 Sum_probs=104.5
Q ss_pred CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-eeeeeee
Q 035558 5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-AVDTQLI 82 (253)
Q Consensus 5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~ 82 (253)
..++|--.+ +++|+++++. ..++...-. .+|.--.|- +.+.|+..+ +..|+-|++... .+...+.
T Consensus 77 ~~iiALrag~~lQiFnl~~k----~klks~~~~------e~VvfWkWi--s~~~l~lVT-~~aVyHW~~~~~s~P~k~fd 143 (1630)
T 1xi4_A 77 SKVIALKAGKTLQIFNIEMK----SKMKAHTMT------DDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFD 143 (1630)
T ss_pred cceEEEecCCeEEEeehHHh----hhhcccccC------CCceEEEec--CCCeeEEEc-CCeEEEeccCCCCccHHHHh
Confidence 345665555 9999999884 334443333 467777785 556666665 458999999743 3443343
Q ss_pred cc----cccEEEEEec-CCCeEEEEe-------CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEee--CCCCCEEEEE
Q 035558 83 AH----DKEVYDIAWG-GVGVFASVS-------ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWN--KQDPRYMATI 148 (253)
Q Consensus 83 ~~----~~~v~~~~~~-~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~ 148 (253)
.| ...|..-..+ +.++++..| -.|.+.+|..+.+... ...+|.+....+... +....++..+
T Consensus 144 R~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ----~iegha~~F~~~~~~~~~~~~~l~~f~ 219 (1630)
T 1xi4_A 144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ----PIEGHAASFAQFKMEGNAEESTLFCFA 219 (1630)
T ss_pred cchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch----hhhHhHhhhheeccCCCCCCceEEEEE
Confidence 33 2345444445 566555332 3578888888765411 111222111111111 1112233322
Q ss_pred Ee--CCCeEEEEECCCC--CCC------eeeecc---cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC
Q 035558 149 IM--DSAKVVVLDIRFP--TLP------VVELQR---HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV 211 (253)
Q Consensus 149 ~~--~~~~i~~~d~~~~--~~~------~~~~~~---~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 211 (253)
.. .|+.+++.++... ..+ +..+.. ......++..++..+ .+..-+.-|.|.+||+.++....
T Consensus 220 ~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 220 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred EecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC-EEEEEecCceEEEEecccchhhh
Confidence 22 2334999988653 111 111111 133455677888764 78888899999999999988654
No 320
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.96 E-value=0.074 Score=40.18 Aligned_cols=147 Identities=13% Similarity=0.073 Sum_probs=73.8
Q ss_pred CCCEEEEEeCC-----CeEEEEeccCceeee--eeecccccEEEEEecCCCeEEEEeCC-----CcEEEEEcCCCCCeee
Q 035558 54 EPRRIGTSSID-----TTCTIWDIEREAVDT--QLIAHDKEVYDIAWGGVGVFASVSAD-----GSVRVFDLRDKEHSTI 121 (253)
Q Consensus 54 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~ 121 (253)
++.+++.|+.+ ..+.+||+.+.+-.. .+......- +++..++.+++.|+.+ ..+.+||+.+.+-. .
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~ 198 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV-GVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWR-M 198 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEE-E
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccce-EEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEe-e
Confidence 46677776643 358888988765222 222111111 1222267777777764 45889998876422 1
Q ss_pred eeccCCCCCCeeEEEeeCCCCCEEEEEEeCC----CeEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEEecCC
Q 035558 122 IYESSEPDTPLVRLGWNKQDPRYMATIIMDS----AKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICTAGDD 196 (253)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~----~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 196 (253)
+.......... +++.. ++.+++.|+.++ ..+.+||+.+..- .+..+...... .+++.. ++ ++++.|+.+
T Consensus 199 ~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~-~i~v~GG~~ 272 (308)
T 1zgk_A 199 ITAMNTIRSGA-GVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA-LGITVH-QG-RIYVLGGYD 272 (308)
T ss_dssp CCCCSSCCBSC-EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-TT-EEEEECCBC
T ss_pred CCCCCCccccc-eEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc-eEEEEE-CC-EEEEEcCcC
Confidence 11111111112 22222 567777776642 2389999876431 11111111111 122222 34 577777754
Q ss_pred -----CcEEEEeccCCC
Q 035558 197 -----SQALIWDLSSMG 208 (253)
Q Consensus 197 -----g~i~iwd~~~~~ 208 (253)
..+.+||+.+.+
T Consensus 273 ~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 273 GHTFLDSVECYDPDTDT 289 (308)
T ss_dssp SSCBCCEEEEEETTTTE
T ss_pred CCcccceEEEEcCCCCE
Confidence 356777776643
No 321
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.87 E-value=0.12 Score=41.13 Aligned_cols=192 Identities=9% Similarity=0.143 Sum_probs=115.4
Q ss_pred ceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe-------CCCeEEEEeccCcee
Q 035558 6 DLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS-------IDTTCTIWDIEREAV 77 (253)
Q Consensus 6 ~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------~dg~i~vwd~~~~~~ 77 (253)
+.|+-..+ .|+-|++... ..+.+.+..|..-.- ..|..-..+ ++.++++..+ -.|.+.+|..+. +.
T Consensus 117 ~~l~lVT~taVyHWsi~~~---s~P~kvFdR~~~L~~-~QIInY~~d-~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~ 190 (494)
T 1bpo_A 117 NTVALVTDNAVYHWSMEGE---SQPVKMFDRHSSLAG-CQIINYRTD-AKQKWLLLTGISAQQNRVVGAMQLYSVDR-KV 190 (494)
T ss_dssp TEEEEECSSEEEEEESSSS---CCCEEEEECCGGGTT-CEEEEEEEC-TTSSEEEEEEEEEETTEEEEEEEEEESTT-CC
T ss_pred CeEEEEcCCeeEEecccCC---CCchhheecchhccc-ceEEEEEEC-CCCCeEEEEeecccCCcccceEEEeeccc-cc
Confidence 44555555 9999999653 255666666653321 467777777 7788776443 246788998874 44
Q ss_pred eeeeecccccEEEEEec-C---CCeEEEEeC---CCcEEEEEcCCCC---C------eeeeeccCCCCCCeeEEEeeCCC
Q 035558 78 DTQLIAHDKEVYDIAWG-G---VGVFASVSA---DGSVRVFDLRDKE---H------STIIYESSEPDTPLVRLGWNKQD 141 (253)
Q Consensus 78 ~~~~~~~~~~v~~~~~~-~---~~~l~~~~~---dg~i~i~d~~~~~---~------~~~~~~~~~~~~~i~~~~~~~~~ 141 (253)
-+.+.+|...-..+... + ..+|..+.. .+.+++-++.... . ....+.......-..++..++ .
T Consensus 191 sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-k 269 (494)
T 1bpo_A 191 SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-K 269 (494)
T ss_dssp EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-T
T ss_pred cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-c
Confidence 55677787666555554 1 124444444 2789999986541 0 011122223344566788888 5
Q ss_pred CCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCC
Q 035558 142 PRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM 207 (253)
Q Consensus 142 ~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 207 (253)
-..+..-+.-|. +++||+.++.. +..-+-....|..-+-..... =++.....|.|.--.+...
T Consensus 270 ygviyviTK~G~-i~lyDleTgt~-i~~nrIs~~~iF~t~~~~~~~-Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 270 HDVVFLITKYGY-IHLYDLETGTC-IYMNRISGETIFVTAPHEATA-GIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp TTEEEEEETTSE-EEEEETTTCCE-EEEEECCSSCEEEEEEETTTT-EEEEEETTCEEEEEEECTT
T ss_pred CCEEEEEecCce-EEEEeccccee-eeeecccCCceEEecccCCCC-cEEEEccCceEEEEEEccc
Confidence 666777777776 99999999763 554444445555544444432 3444446776666655543
No 322
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.73 E-value=0.083 Score=37.87 Aligned_cols=107 Identities=4% Similarity=-0.087 Sum_probs=62.1
Q ss_pred CeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccc--------eeEEEEecCCCCeEEEecCCCcEEEE
Q 035558 131 PLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQAS--------VNAIAWAPHSSCHICTAGDDSQALIW 202 (253)
Q Consensus 131 ~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~~l~~~~~dg~i~iw 202 (253)
.+..++|+| ++.+.++ .++. ++-.+..+... ....+-... ..++.|.|+| .+.++ .||.|+-+
T Consensus 42 ~~~~laf~P-~G~LYaV--~~G~-Ly~~~~~t~~~--~~W~~s~t~IG~~Gw~~F~a~~fD~~G-~LYav--~dG~iyr~ 112 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV--LNDK-IYKGTPPTHDN--DNWMGRAKKIGNGGWNQFQFLFFDPNG-YLYAV--SKDKLYKA 112 (236)
T ss_dssp TCSEEEECT-TSCEEEE--ETTE-EEEESCCCSTT--CCHHHHCEEEECSCGGGCSEEEECTTS-CEEEE--ETTEEEEE
T ss_pred cceeEEECC-CccEEEE--eCCe-EEEECCCCCCc--ccccccccEecccccccceEEEECCCC-CEEEe--CCCEEEEe
Confidence 678999999 8887777 6665 77766544221 111111222 4789999999 34444 56988777
Q ss_pred eccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcE
Q 035558 203 DLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKL 248 (253)
Q Consensus 203 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i 248 (253)
+-.+.....-.......-..-=..+..|.+.|+|. |.++. ++.+
T Consensus 113 ~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~-dg~l 156 (236)
T 1tl2_A 113 SPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH-GQQF 156 (236)
T ss_dssp SCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE-TTEE
T ss_pred CCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe-CCcE
Confidence 65432211100000001111124679999999996 66777 7764
No 323
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.62 E-value=0.081 Score=37.92 Aligned_cols=151 Identities=5% Similarity=-0.042 Sum_probs=80.8
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeeccccc--------EEEEEec-CCCeEEEEeCCCcEEEEEc
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKE--------VYDIAWG-GVGVFASVSADGSVRVFDL 113 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--------v~~~~~~-~~~~l~~~~~dg~i~i~d~ 113 (253)
..+..++|+ |++.+.+. .+|.++-.+..+.... .+.+.... -.++.|. ++.+.++ .||.|.-++-
T Consensus 41 ~~~~~laf~-P~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLS-PGGELYGV--LNDKIYKGTPPTHDND-NWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEEC-TTSCEEEE--ETTEEEEESCCCSTTC-CHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ccceeEEEC-CCccEEEE--eCCeEEEECCCCCCcc-cccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 467899999 58886666 6788776666442211 11111122 3667777 7777766 5698887775
Q ss_pred CCCCCeeeeecc----CCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCC-----eeeec-ccccceeEEEEe
Q 035558 114 RDKEHSTIIYES----SEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLP-----VVELQ-RHQASVNAIAWA 183 (253)
Q Consensus 114 ~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~-----~~~~~-~~~~~i~~~~~~ 183 (253)
.+......+... ...=..+..|.|.| ++.+.++. ++. ++-...-..... ...+. ..-....-+.|.
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~-lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~ 190 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQ-FYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFS 190 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTE-EEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEEC
T ss_pred CcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCc-EEecCCCCCCCcccccccceeccCCcceEEEEEEC
Confidence 433221111110 00112678899999 88888776 665 432221111100 01111 222234457799
Q ss_pred cCCCCeEEEecCCCcEEEEeccCCC
Q 035558 184 PHSSCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 184 ~~~~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
|++ .+.++. +| ++|.....+
T Consensus 191 ~~G-~l~~v~--~g--~~Y~~~~p~ 210 (236)
T 1tl2_A 191 SVG-TLFGVQ--GG--KFYEDYPPS 210 (236)
T ss_dssp TTS-CEEEEE--TT--EEEEESCCC
T ss_pred CCC-cEEEEe--CC--eEEecCCcc
Confidence 988 444444 66 555555443
No 324
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.58 E-value=0.16 Score=38.55 Aligned_cols=185 Identities=9% Similarity=-0.003 Sum_probs=88.7
Q ss_pred eEEeecCcEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC----CC-------eEEEEeccCc
Q 035558 7 LLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI----DT-------TCTIWDIERE 75 (253)
Q Consensus 7 ~l~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg-------~i~vwd~~~~ 75 (253)
+++.|+..+..||..+. .+.. ..+..... ..-.+++. .++.+++.|+. ++ .+.+||..+.
T Consensus 18 i~~~GG~~~~~yd~~~~--~W~~-~~~~~~~~----r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~ 88 (318)
T 2woz_A 18 ILLVNDTAAVAYDPMEN--ECYL-TALAEQIP----RNHSSIVT--QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS 88 (318)
T ss_dssp EEEECSSEEEEEETTTT--EEEE-EEECTTSC----SSEEEEEC--SSSCEEEEESSCC-------CCCBEEEEEETTTT
T ss_pred hhhccccceEEECCCCC--ceec-ccCCccCC----ccceEEEE--ECCEEEEECCcccCccccCCCccccEEEEeCCCC
Confidence 44445558889998874 2222 11211110 11122332 46777778873 12 1777888766
Q ss_pred eeee--eeecccccEEEEEecCCCeEEEEeCC-------CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEE
Q 035558 76 AVDT--QLIAHDKEVYDIAWGGVGVFASVSAD-------GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMA 146 (253)
Q Consensus 76 ~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 146 (253)
+-.. .+...... .+++..++.+++.|+.+ ..+.+||..+.+-. .+...+.....- +++. . ++.+++
T Consensus 89 ~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~~~-~~~~-~-~~~iyv 163 (318)
T 2woz_A 89 EWVGLPPLPSARCL-FGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWS-EVKNLPIKVYGH-NVIS-H-NGMIYC 163 (318)
T ss_dssp EEEECSCBSSCBCS-CEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEE-EECCCSSCEESC-EEEE-E-TTEEEE
T ss_pred cEEECCCCCccccc-cceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEe-ECCCCCCccccc-EEEE-E-CCEEEE
Confidence 5222 22211111 12222267777777754 24788888876422 121111111111 2222 2 667777
Q ss_pred EEEeCC-----CeEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEEecCC-----CcEEEEeccCCC
Q 035558 147 TIIMDS-----AKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICTAGDD-----SQALIWDLSSMG 208 (253)
Q Consensus 147 ~~~~~~-----~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 208 (253)
.|+.+. ..+.+||..+..- .+..+...... .+++.. ++ ++++.|+.+ ..+.+||+.+..
T Consensus 164 ~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 164 LGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM-FGVAIH-KG-KIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp ECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TT-EEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred EcCCCCCCCccceEEEEcCCCCEEEECCCCCCCccc-ceEEEE-CC-EEEEEcCcCCCCccceEEEEECCCCe
Confidence 776521 1388999886531 11111111111 122222 34 567777643 356788887765
No 325
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.47 E-value=0.35 Score=41.25 Aligned_cols=153 Identities=9% Similarity=0.031 Sum_probs=81.9
Q ss_pred CCCEEEEEeCCC------eEEEEeccCce--eeeeeecccccEEEEEe-cCCCeEEEEeCCC--cEEEEEcCCCCCeeee
Q 035558 54 EPRRIGTSSIDT------TCTIWDIEREA--VDTQLIAHDKEVYDIAW-GGVGVFASVSADG--SVRVFDLRDKEHSTII 122 (253)
Q Consensus 54 ~~~~l~~~~~dg------~i~vwd~~~~~--~~~~~~~~~~~v~~~~~-~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~ 122 (253)
++.+++.|+.++ .+.+||..+.+ .+..+...... .+++. .++.+++.|+.++ .+.+||..+..-....
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 677778877543 57888888754 22222211122 22333 3778888887655 6899999876522111
Q ss_pred e--ccCCCCCCeeEEEeeCCCCCEEEEEEeC--C----CeEEEEECCCCCC--C--eeeecc---cccceeEEEEecCCC
Q 035558 123 Y--ESSEPDTPLVRLGWNKQDPRYMATIIMD--S----AKVVVLDIRFPTL--P--VVELQR---HQASVNAIAWAPHSS 187 (253)
Q Consensus 123 ~--~~~~~~~~i~~~~~~~~~~~~l~~~~~~--~----~~i~~~d~~~~~~--~--~~~~~~---~~~~i~~~~~~~~~~ 187 (253)
. ..+........+.+....+.+++.|+.+ + ..+..||+.+..- . -..+.. ....-.++....++
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~- 608 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPR- 608 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETT-
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCC-
Confidence 1 0111222233355565336677777762 1 2488999887551 0 111111 11111233333434
Q ss_pred CeEEEecC--------CCcEEEEeccCCC
Q 035558 188 CHICTAGD--------DSQALIWDLSSMG 208 (253)
Q Consensus 188 ~~l~~~~~--------dg~i~iwd~~~~~ 208 (253)
++++.|+. ...+.+||+.+..
T Consensus 609 ~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 609 KLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp EEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred EEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 57777774 3568899988754
No 326
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.43 E-value=0.21 Score=38.21 Aligned_cols=197 Identities=12% Similarity=0.157 Sum_probs=120.6
Q ss_pred EecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccC--
Q 035558 49 DWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESS-- 126 (253)
Q Consensus 49 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-- 126 (253)
-.+ |..+.+|.-. ..++.++|+++.+.+....- ...|.-=.|-+.+.|+..+ +..|+-|++.....+..+....
T Consensus 73 IMn-P~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~ 148 (365)
T 2xzh_A 73 IMN-PASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSS 148 (365)
T ss_dssp EEC-SSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSEEEEEE-SSEEEEEESSTTCCCEEEEECCGG
T ss_pred eeC-CCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCCeEEEEc-CCcEEEEcccCCCCCceeeecchh
Confidence 346 6777777765 67999999999887777663 4567666666777777666 4579999998755444444322
Q ss_pred CCCCCeeEEEeeCCCCCEEEEEEe---CC---CeEEEEECCCCCCCeeeecccccceeEEEEecC--CCCeEEEecC---
Q 035558 127 EPDTPLVRLGWNKQDPRYMATIIM---DS---AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPH--SSCHICTAGD--- 195 (253)
Q Consensus 127 ~~~~~i~~~~~~~~~~~~l~~~~~---~~---~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~--- 195 (253)
-....|.....++ +.++++..+- ++ +.+.+|..+... -+.+.+|.+....+.+..+ ..++++.+..
T Consensus 149 L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~~--sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 225 (365)
T 2xzh_A 149 LAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKV--SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 225 (365)
T ss_dssp GTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTTTE--EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred cccceEEEEEECC-CCCEEEEEeEeccCCccceeEEEEeecccc--cceeeeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 1234677777777 7777665542 22 237888887532 5677777665544433221 1123443332
Q ss_pred CCcEEEEeccCC---CCCCCCCCCCeeec---cCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558 196 DSQALIWDLSSM---GQPVEGGLDPILAY---TAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 253 (253)
Q Consensus 196 dg~i~iwd~~~~---~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l 253 (253)
.++++|-++... ..+.... .....+ ...+-..++..++....+.....-|.++++|+
T Consensus 226 g~kLhIiEi~~~~~~~~~f~kk-~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDl 288 (365)
T 2xzh_A 226 GGKLHIIEVGTPPTGNQPFPKK-AVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDL 288 (365)
T ss_dssp EEEEEEEECSSCCTTCCCCCCE-EEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEET
T ss_pred CcEEEEEEcCCCCCCCCCcccc-cceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEc
Confidence 368999998553 1111000 000111 12455567888887777778888888998875
No 327
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.38 E-value=0.22 Score=38.04 Aligned_cols=189 Identities=7% Similarity=-0.043 Sum_probs=95.9
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---eeee-eecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCC
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---VDTQ-LIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEH 118 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~-~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 118 (253)
..+.+|.|. ..+..+++ +..|.|. .....++ .+.. .......+.++.+.+ +.+..++.++.|.. ....++.
T Consensus 36 ~~~~~v~~~-~~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~t 110 (327)
T 2xbg_A 36 ATILDMSFI-DRHHGWLV-GVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQS 110 (327)
T ss_dssp SCEEEEEES-SSSCEEEE-ETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSS
T ss_pred CcEEEEEEC-CCCcEEEE-cCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEECCCeEEE-ECCCCCC
Confidence 578999987 55566664 4577653 3333333 2211 111244678888864 33444556665443 2333443
Q ss_pred eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCc
Q 035558 119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQ 198 (253)
Q Consensus 119 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 198 (253)
...+.........+..+.+.+ ++..++++ .++. |.. ....+..-..........+..+++.|++ .+++.+. +|.
T Consensus 111 W~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~-v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~-~~~~~g~-~G~ 184 (327)
T 2xbg_A 111 WSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGA-IYR-TKDSGKNWQALVQEAIGVMRNLNRSPSG-EYVAVSS-RGS 184 (327)
T ss_dssp CEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCC-EEE-ESSTTSSEEEEECSCCCCEEEEEECTTS-CEEEEET-TSS
T ss_pred ceECccccCCCCCeEEEEEEC-CCCEEEEe-CCcc-EEE-EcCCCCCCEEeecCCCcceEEEEEcCCC-cEEEEEC-CCc
Confidence 333322212223567787765 55555544 4554 432 1111221112222345578899999987 5666654 454
Q ss_pred EEE-EeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEE
Q 035558 199 ALI-WDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQI 250 (253)
Q Consensus 199 i~i-wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~v 250 (253)
+.. .|-. +..-. .........+..+++.+++. +++++.++.+.+
T Consensus 185 ~~~S~d~g-G~tW~------~~~~~~~~~~~~~~~~~~g~-~~~~~~~G~~~~ 229 (327)
T 2xbg_A 185 FYSTWEPG-QTAWE------PHNRTTSRRLHNMGFTPDGR-LWMIVNGGKIAF 229 (327)
T ss_dssp EEEEECTT-CSSCE------EEECCSSSCEEEEEECTTSC-EEEEETTTEEEE
T ss_pred EEEEeCCC-CCcee------ECCCCCCCccceeEECCCCC-EEEEeCCceEEE
Confidence 433 3321 11110 11223456788899988886 555665665544
No 328
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.38 E-value=0.23 Score=38.31 Aligned_cols=151 Identities=13% Similarity=0.175 Sum_probs=80.3
Q ss_pred cccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeecc----CCCCCCeeEEEeeCC--CCCEEEEE-E--eCCCe
Q 035558 85 DKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYES----SEPDTPLVRLGWNKQ--DPRYMATI-I--MDSAK 154 (253)
Q Consensus 85 ~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~i~~~~~~~~--~~~~l~~~-~--~~~~~ 154 (253)
-...+.|+|. +++++++--..|.|++++...++.. .+... .........|+++|+ .+..|.+. + .++.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~-~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~- 108 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT-ELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR- 108 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE-
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe-eecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE-
Confidence 3467899999 8887777655899999986655422 22111 123457889999993 13344432 2 2333
Q ss_pred EEEEECCCCC-------CCee---eec-ccccceeEEEEecCCCCeEEEecC-------------CCcEEEEeccCCCCC
Q 035558 155 VVVLDIRFPT-------LPVV---ELQ-RHQASVNAIAWAPHSSCHICTAGD-------------DSQALIWDLSSMGQP 210 (253)
Q Consensus 155 i~~~d~~~~~-------~~~~---~~~-~~~~~i~~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~~~ 210 (253)
|.-|.+.... .... .+. .....-..|+|.|+| .+.++.+. -|.|.-.+... +.+
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG-~ip 186 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTPDG-EPA 186 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECTTS-SBC
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeCCC-Ccc
Confidence 6666654411 1111 121 112234679999999 56665442 24444444332 111
Q ss_pred CCCC--CCCeeeccCCCceeEEEEcCCCCceE
Q 035558 211 VEGG--LDPILAYTAGAEIEQLQWSSSQPDWV 240 (253)
Q Consensus 211 ~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~ 240 (253)
.... .......+|. ....++|+|++..++
T Consensus 187 ~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~ 217 (347)
T 3das_A 187 PGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFA 217 (347)
T ss_dssp TTCSSTTCCEEEBCCS-BCCEEEECTTCCEEE
T ss_pred CCCCCCCCeEEeeCCC-CcceEEECCCCCEEE
Confidence 1000 0123444554 455899999876443
No 329
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.32 E-value=0.26 Score=38.16 Aligned_cols=101 Identities=6% Similarity=-0.012 Sum_probs=58.4
Q ss_pred CeeEEEecCCCCCEEEEEeCCCeEEEEeccCce--eeeeee---cccccEEEEEec-C---CCeEEEEeC-C-----CcE
Q 035558 44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA--VDTQLI---AHDKEVYDIAWG-G---VGVFASVSA-D-----GSV 108 (253)
Q Consensus 44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~---~~~~~v~~~~~~-~---~~~l~~~~~-d-----g~i 108 (253)
....++|. +++++++ +..+|.|++++ +++ .+..+. ........|+++ + +..|+.+.. . +.|
T Consensus 32 ~P~~ia~~-pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 32 VPWALAFL-PDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp CEEEEEEC-TTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CceEEEEc-CCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 45689999 7888555 45679999998 343 222111 123567899999 6 445544433 2 568
Q ss_pred EEEEcCCCCC--eeeeec-cC---CCCCCeeEEEeeCCCCCEEEEEE
Q 035558 109 RVFDLRDKEH--STIIYE-SS---EPDTPLVRLGWNKQDPRYMATII 149 (253)
Q Consensus 109 ~i~d~~~~~~--~~~~~~-~~---~~~~~i~~~~~~~~~~~~l~~~~ 149 (253)
..++...... ...+.. .. ........++|.| ++.+.++.+
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G 153 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTG 153 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEEC
Confidence 8888764321 111211 11 1112346899999 786666543
No 330
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.26 E-value=0.65 Score=42.11 Aligned_cols=187 Identities=10% Similarity=0.015 Sum_probs=100.3
Q ss_pred CCeeEEEecCCC-----CCEEEEEeC-CCeEEEEeccCceeeeeee-cccccEEEEEec---CCCeEEEEeCCCcEEEEE
Q 035558 43 GPLTSFDWNEAE-----PRRIGTSSI-DTTCTIWDIEREAVDTQLI-AHDKEVYDIAWG---GVGVFASVSADGSVRVFD 112 (253)
Q Consensus 43 ~~v~~~~~~~~~-----~~~l~~~~~-dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~---~~~~l~~~~~dg~i~i~d 112 (253)
..|.|+++.|.. .++++.|.. |++|+|+++.+.+.+.... +......++.+. ...+|..|-.||.+.-+.
T Consensus 554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~ 633 (1158)
T 3ei3_A 554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFG 633 (1158)
T ss_dssp SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEE
T ss_pred CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEE
Confidence 679999997422 478999996 9999999998766544322 112345555554 345788899999987666
Q ss_pred cCC--CCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccce-eEEEEecCC-CC
Q 035558 113 LRD--KEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASV-NAIAWAPHS-SC 188 (253)
Q Consensus 113 ~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i-~~~~~~~~~-~~ 188 (253)
+.. +..........+ ..++.-..+.. .+..-+.+..+.. ..+|--+. + +....-....+ ....|+... +.
T Consensus 634 ~d~~tg~l~d~r~~~LG-~~pv~L~~~~~-~~~~~V~a~s~rp-~liy~~~~-~--l~~s~l~~~~v~~~~~F~se~~~~ 707 (1158)
T 3ei3_A 634 LNIETGLLSDRKKVTLG-TQPTVLRTFRS-LSTTNVFACSDRP-TVIYSSNH-K--LVFSNVNLKEVNYMCPLNSDGYPD 707 (1158)
T ss_dssp ECTTTCCEEEEEEEECC-SSCCEEEEEES-SSCEEEEEESSSC-EEEEESSS-S--EEEEEBSSSCCCEEEEECCSSSTT
T ss_pred EcCCCCccccceeEEcC-CCceEEEEEee-CCceeEEEECCCC-EEEEEcCC-c--eEEeccChHHhceEeccCcccCCC
Confidence 543 322111111112 22444444443 3333333333444 34443321 2 11111111223 223453321 12
Q ss_pred eEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE
Q 035558 189 HICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI 242 (253)
Q Consensus 189 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 242 (253)
-++..+ ++.++|..+...... +.....-...+..++++|..+.++.+
T Consensus 708 g~v~~~-~~~LrI~~i~~~~~~------~~~~ipL~~Tprri~y~~~~~~~~v~ 754 (1158)
T 3ei3_A 708 SLALAN-NSTLTIGTIDEIQKL------HIRTVPLYESPRKICYQEVSQCFGVL 754 (1158)
T ss_dssp EEEEEC-SSCEEEEEECCSSSE------EEEEEECSSEEEEEEEEGGGTEEEEE
T ss_pred cEEEEc-CCceEEEEecccCCe------eEEEEeCCCCceEEEEcCCCCEEEEE
Confidence 244333 456999988654322 23444556789999999988755543
No 331
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.01 E-value=0.65 Score=39.91 Aligned_cols=184 Identities=6% Similarity=0.024 Sum_probs=98.4
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee-----cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCC
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI-----AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDK 116 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~ 116 (253)
..|.++... ++ .|..|+.+ -|..+|..+++.. .+. .....|.++... ++.+.+ ++.+| +..+|..+.
T Consensus 103 ~~i~~i~~~--~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~ 175 (758)
T 3ott_A 103 TDVRTMALQ--GD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNG 175 (758)
T ss_dssp SCEEEEEEE--TT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEEE-EETTE-EEEEETTTT
T ss_pred ceEEEEEec--CC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCC
Confidence 357666543 34 56666666 5788888765532 221 113467787777 666555 44444 777887665
Q ss_pred CCeeeeeccCC---CCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeec-ccccceeEEEEecCCCCeEEE
Q 035558 117 EHSTIIYESSE---PDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQ-RHQASVNAIAWAPHSSCHICT 192 (253)
Q Consensus 117 ~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~ 192 (253)
+.. ....... ....|.++...+ ++..|..++. ++ +..+|..+.. ...+. .....|.++...+++ .|..
T Consensus 176 ~~~-~~~~~~~~~~~~~~i~~i~~d~-~~~~lWigt~-~G-l~~~~~~~~~--~~~~~~l~~~~i~~i~~d~~g--~lWi 247 (758)
T 3ott_A 176 KFE-GIPLPVHSSQSNLFVNSLLEDT-TRQCVWIGTE-GY-LFQYFPSTGQ--IKQTEAFHNNSIKSLALDGNG--DLLA 247 (758)
T ss_dssp EEE-EECCCCCTTCSSCCEEEEEEET-TTTEEEEEEE-EE-EEEEETTTTE--EEEEEEEEEEEEEEEEECTTC--CEEE
T ss_pred ceE-EecCCCccccccceeEEEEEEC-CCCEEEEEEC-CC-CeEEcCCCCe--EEeccCCCCCeEEEEEEcCCC--CEEE
Confidence 421 1111110 122478887776 5555555554 45 9999976543 22221 123458888888777 3555
Q ss_pred ecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE
Q 035558 193 AGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI 242 (253)
Q Consensus 193 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 242 (253)
|+. +-+.+++..+...............-....|.++...+++..+++.
T Consensus 248 gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT 296 (758)
T 3ott_A 248 GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGT 296 (758)
T ss_dssp EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEE
T ss_pred EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEe
Confidence 554 4577888765431110000000000123468888888877655543
No 332
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.96 E-value=0.36 Score=36.54 Aligned_cols=106 Identities=7% Similarity=0.045 Sum_probs=55.7
Q ss_pred CCCEEEEEeCC-------CeEEEEeccCceeee--eeecccccEEEEEecCCCeEEEEeC------CCcEEEEEcCCCCC
Q 035558 54 EPRRIGTSSID-------TTCTIWDIEREAVDT--QLIAHDKEVYDIAWGGVGVFASVSA------DGSVRVFDLRDKEH 118 (253)
Q Consensus 54 ~~~~l~~~~~d-------g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~ 118 (253)
++.+++.|+.+ ..+.+||..+.+-.. .+...... .+++..++.+++.|+. -..+.+||+.+.+-
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-HNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-CEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-cEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence 46677777754 257788887765222 22111111 1112226677777764 23589999987652
Q ss_pred eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC----eEEEEECCCCC
Q 035558 119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA----KVVVLDIRFPT 164 (253)
Q Consensus 119 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~----~i~~~d~~~~~ 164 (253)
. .+......... .+++.. ++.+++.|+.++. .+.+||+.+..
T Consensus 188 ~-~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 188 K-DLAPMKTPRSM-FGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp E-EECCCSSCCBS-CEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred E-ECCCCCCCccc-ceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 2 22222221111 222222 5677788776432 37789987654
No 333
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.90 E-value=0.73 Score=39.60 Aligned_cols=188 Identities=7% Similarity=0.000 Sum_probs=103.2
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeee
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTII 122 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 122 (253)
..|.++.-. .++ .|..|+.+| +..||..+.+...........|.++...++ .|..++.+ -+..+|..+.+.....
T Consensus 63 ~~i~~i~~d-~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~~g-~lWigt~~-Gl~~~~~~~~~~~~~~ 137 (758)
T 3ott_A 63 TRIYCGVII-DNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQGD-TLWLGALN-GLYTYQLQSRKLTSFD 137 (758)
T ss_dssp SCEEEEEEE-TTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEETT-EEEEEETT-EEEEEETTTCCEEEEC
T ss_pred ceEEEEEEc-CCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEecCC-cEEEEcCC-cceeEeCCCCeEEEec
Confidence 468887765 444 566777666 788998876533211112235666644344 45555555 5788888765422110
Q ss_pred e-ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeec--c----cccceeEEEEecCCCCeEEEecC
Q 035558 123 Y-ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQ--R----HQASVNAIAWAPHSSCHICTAGD 195 (253)
Q Consensus 123 ~-~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~----~~~~i~~~~~~~~~~~~l~~~~~ 195 (253)
. ........|.++.... ++.+.+ ++ .++ +..+|..+.. ...+. . ....|.++...+++ ..|..|..
T Consensus 138 ~~~~~l~~~~i~~i~~d~-~g~lWi-gt-~~G-l~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~~~-~~lWigt~ 210 (758)
T 3ott_A 138 TRRNGLPNNTIYSIIRTK-DNQIYV-GT-YNG-LCRYIPSNGK--FEGIPLPVHSSQSNLFVNSLLEDTTR-QCVWIGTE 210 (758)
T ss_dssp HHHHCCSCSCEEEEEECT-TCCEEE-EE-TTE-EEEEETTTTE--EEEECCCCCTTCSSCCEEEEEEETTT-TEEEEEEE
T ss_pred cCCCCcCCCeEEEEEEcC-CCCEEE-Ee-CCC-HhhCccCCCc--eEEecCCCccccccceeEEEEEECCC-CEEEEEEC
Confidence 1 1112233678887776 565554 44 345 8889876533 22111 1 12247888887766 35555553
Q ss_pred CCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 196 DSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 196 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
+-+..+|..+..... ...-....|.++...+++..+++ + ++.+.+++
T Consensus 211 -~Gl~~~~~~~~~~~~-------~~~l~~~~i~~i~~d~~g~lWig-T-~~Gl~~~~ 257 (758)
T 3ott_A 211 -GYLFQYFPSTGQIKQ-------TEAFHNNSIKSLALDGNGDLLAG-T-DNGLYVYH 257 (758)
T ss_dssp -EEEEEEETTTTEEEE-------EEEEEEEEEEEEEECTTCCEEEE-E-TTEEEEEC
T ss_pred -CCCeEEcCCCCeEEe-------ccCCCCCeEEEEEEcCCCCEEEE-e-CCceeEEe
Confidence 457788876543111 00112346888888888875544 3 34555543
No 334
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.87 E-value=0.54 Score=37.84 Aligned_cols=107 Identities=10% Similarity=0.197 Sum_probs=58.7
Q ss_pred ccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccC------CCCCCeeEEEeeCC--CCCEEEEEEeC-----
Q 035558 86 KEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESS------EPDTPLVRLGWNKQ--DPRYMATIIMD----- 151 (253)
Q Consensus 86 ~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~~~i~~~~~~~~--~~~~l~~~~~~----- 151 (253)
...+.|+|. +++++++-...+.|++++..++... .+.... .....+..|+|+|+ .+..|.++...
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~-~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVK-TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe-EEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 356789999 8887776544457888876544422 222111 12457789999993 04444444321
Q ss_pred -------CCeEEEEECCCCC------CCee-eecc-cccceeEEEEecCCCCeEEEec
Q 035558 152 -------SAKVVVLDIRFPT------LPVV-ELQR-HQASVNAIAWAPHSSCHICTAG 194 (253)
Q Consensus 152 -------~~~i~~~d~~~~~------~~~~-~~~~-~~~~i~~~~~~~~~~~~l~~~~ 194 (253)
...|.-++..... +.+. .+.. .......|+|.|+| ++.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEEC
Confidence 1226666654321 0111 1221 12346889999999 4555544
No 335
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.85 E-value=0.45 Score=36.82 Aligned_cols=103 Identities=8% Similarity=-0.110 Sum_probs=58.7
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce-eeeeee---cccccEEEEEec-C---CCeEEEEeC----C----C
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA-VDTQLI---AHDKEVYDIAWG-G---VGVFASVSA----D----G 106 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~---~~~~~v~~~~~~-~---~~~l~~~~~----d----g 106 (253)
.....++|. +++++++ +..+|.|++++. +++ .+..+. ........|+++ + +..|..+.. + .
T Consensus 29 ~~P~~ia~~-pdG~l~V-~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 29 EVPWSIAPL-GGGRYLV-TERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp SCEEEEEEE-ETTEEEE-EETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCeEEEEc-CCCeEEE-EeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 356789999 7787554 566799999974 444 222211 123467899998 5 445544433 3 5
Q ss_pred cEEEEEcCCCC--C--eeeeec-c-CCCCCCeeEEEeeCCCCCEEEEEE
Q 035558 107 SVRVFDLRDKE--H--STIIYE-S-SEPDTPLVRLGWNKQDPRYMATII 149 (253)
Q Consensus 107 ~i~i~d~~~~~--~--~~~~~~-~-~~~~~~i~~~~~~~~~~~~l~~~~ 149 (253)
.|..++..... . ...+.. . .........|+|.| ++.+.++.+
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G 153 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTG 153 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECC
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEEC
Confidence 67777776541 0 111111 1 11111356799999 887666643
No 336
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.65 E-value=0.81 Score=42.20 Aligned_cols=192 Identities=9% Similarity=0.144 Sum_probs=102.0
Q ss_pred CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe-------CCCeEEEEeccCce
Q 035558 5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS-------IDTTCTIWDIEREA 76 (253)
Q Consensus 5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------~dg~i~vwd~~~~~ 76 (253)
.+.|+-.++ .|.-|++... ..+.+.+..|..-.- ..|..-..+ ++.++++..+ ..|.+.+|..+.+
T Consensus 116 ~~~l~lVT~~aVyHW~~~~~---s~P~k~fdR~~~L~~-~QIinY~~d-~~~kW~~l~gi~~~~~~v~G~mQLyS~er~- 189 (1630)
T 1xi4_A 116 LNTVALVTDNAVYHWSMEGE---SQPVKMFDRHSSLAG-CQIINYRTD-AKQKWLLLTGISAQQNRVVGAMQLYSVDRK- 189 (1630)
T ss_pred CCeeEEEcCCeEEEeccCCC---CccHHHHhcchhccc-CeeEEeeeC-CCCCeEEEEeeccCCCcccceeeeeecccc-
Confidence 344555555 9999999642 245555555542221 456677777 7777766443 3578899988743
Q ss_pred eeeeeecccccEEEEEec----CCCeEEEEeC---CCcEEEEEcCCC-C--C------eeeeeccCCCCCCeeEEEeeCC
Q 035558 77 VDTQLIAHDKEVYDIAWG----GVGVFASVSA---DGSVRVFDLRDK-E--H------STIIYESSEPDTPLVRLGWNKQ 140 (253)
Q Consensus 77 ~~~~~~~~~~~v~~~~~~----~~~~l~~~~~---dg~i~i~d~~~~-~--~------~~~~~~~~~~~~~i~~~~~~~~ 140 (253)
..+.+.||...-..+... ...++..+.. .+.+++-++... . . ....+.......-..++..++
T Consensus 190 ~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~- 268 (1630)
T 1xi4_A 190 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE- 268 (1630)
T ss_pred cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecc-
Confidence 344455665544333333 1122222222 368999988654 1 0 011112222233445677777
Q ss_pred CCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccC
Q 035558 141 DPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSS 206 (253)
Q Consensus 141 ~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 206 (253)
.-..+...+.-|. +++||+.++.. +..-+-...+|...+-.+... =++.....|.|.--.+..
T Consensus 269 k~g~iy~itk~G~-~~~~d~~t~~~-i~~~ris~~~iF~~~~~~~~~-g~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 269 KHDVVFLITKYGY-IHLYDLETGTC-IYMNRISGETIFVTAPHEATA-GIIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred ccCEEEEEecCce-EEEEecccchh-hhhccccCCceEEeccCCCCC-ceEEEcCCceEEEEEEcc
Confidence 5556666677777 99999998763 333222233343333332221 233333555555444443
No 337
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.20 E-value=0.77 Score=35.27 Aligned_cols=139 Identities=9% Similarity=-0.045 Sum_probs=62.4
Q ss_pred CeEEEEeccCceee--eeeecccccEEEEEecCCCeEEEEeC------CCcEEEEEc--CCCCCeeeeeccCCCCCCee-
Q 035558 65 TTCTIWDIEREAVD--TQLIAHDKEVYDIAWGGVGVFASVSA------DGSVRVFDL--RDKEHSTIIYESSEPDTPLV- 133 (253)
Q Consensus 65 g~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~l~~~~~------dg~i~i~d~--~~~~~~~~~~~~~~~~~~i~- 133 (253)
..+.+||..+.+-. ..+......-.+++..++.+++.|+. ...+..||+ .+.. ...+...........
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~-W~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLK-WNKLAPVSSPDGVAGG 246 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CE-EEECCCSSTTTCCBSC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCc-EEecCCCCCCcccccc
Confidence 47889998876522 22221111102223236677777764 345777877 3332 222222111111111
Q ss_pred EEEeeCCCCCEEEEEEeCC---------------------CeEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEE
Q 035558 134 RLGWNKQDPRYMATIIMDS---------------------AKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHIC 191 (253)
Q Consensus 134 ~~~~~~~~~~~l~~~~~~~---------------------~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~ 191 (253)
++... ++.+++.|+.+. ..+.+||+.+..- .+..+......- ++ ..-++ ++++
T Consensus 247 ~~~~~--~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~-~~~~~-~i~v 321 (357)
T 2uvk_A 247 FAGIS--NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYG-VS-LPWNN-SLLI 321 (357)
T ss_dssp EEEEE--TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSS-EE-EEETT-EEEE
T ss_pred eEEEE--CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccc-ee-EEeCC-EEEE
Confidence 12222 567777777431 1278899886541 122222211211 22 22344 5777
Q ss_pred EecCCC------cEEEEeccCCCC
Q 035558 192 TAGDDS------QALIWDLSSMGQ 209 (253)
Q Consensus 192 ~~~~dg------~i~iwd~~~~~~ 209 (253)
.|+.++ .+.++++++.+.
T Consensus 322 ~GG~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 322 IGGETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp EEEECGGGCEEEEEEEEEC-CCSC
T ss_pred EeeeCCCCCEeeeEEEEEEcCcEe
Confidence 777542 355567776653
No 338
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.07 E-value=0.66 Score=35.68 Aligned_cols=107 Identities=9% Similarity=-0.050 Sum_probs=62.0
Q ss_pred ceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEec--CCCCCEEEEE-eCCCeEEEEeccCceeeeee
Q 035558 6 DLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWN--EAEPRRIGTS-SIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 6 ~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~ 81 (253)
.+++++.+ .|.-.|..++ +....++.... .++....-. +.++..++.. +.||.|..++.+++.....+
T Consensus 12 ~V~v~t~dG~l~Ald~~tG----~~~W~~~~~~~----~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~ 83 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNG----HIIWSIEPENF----QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL 83 (339)
T ss_dssp EEEEEETTSCEEEEETTTT----EEEEEECGGGS----CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCC----cEEEEecCCcc----CCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee
Confidence 34555556 9999999888 66666554310 222222111 0122333333 58999999999888644433
Q ss_pred ec----ccccEEE---EEe------cCCCeEEEEeCCCcEEEEEcCCCCCee
Q 035558 82 IA----HDKEVYD---IAW------GGVGVFASVSADGSVRVFDLRDKEHST 120 (253)
Q Consensus 82 ~~----~~~~v~~---~~~------~~~~~l~~~~~dg~i~i~d~~~~~~~~ 120 (253)
.. ...++.. ... +.+..+++|+.+|.+...|+++++...
T Consensus 84 ~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W 135 (339)
T 2be1_A 84 SIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIIS 135 (339)
T ss_dssp EHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEE
T ss_pred ccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEE
Confidence 21 1122221 000 146688899999999999999998443
No 339
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.64 E-value=1.2 Score=34.49 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=44.2
Q ss_pred cceeEEEEec-------CCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCc
Q 035558 175 ASVNAIAWAP-------HSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTK 247 (253)
Q Consensus 175 ~~i~~~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 247 (253)
..+..++|.+ ++ .++++.-..+.|...++....... ....+......+..+++.|+|.. +.+..+..
T Consensus 271 ~ap~G~~~y~g~~fp~~~g-~l~v~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~~rp~~v~~~pdG~l-yv~td~~~ 344 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQ-KLFIGALKDKDVIVMSVNGDKVTE----DGRILTDRGQRIRDVRTGPDGYL-YVLTDESS 344 (353)
T ss_dssp CCEEEEEEECCSSSGGGTT-EEEEEETTTTEEEEEEEETTEEEE----EEEESGGGCCCEEEEEECTTSCE-EEEECSTT
T ss_pred cCcceeEEECCccCcccCC-cEEEEEccCCEEEEEEeCCCeEee----eEEcccCCCCceeEEEECCCCcE-EEEEeCCC
Confidence 3567788864 35 577777778888888887532111 00111233458999999999984 44433344
Q ss_pred EEEEEC
Q 035558 248 LQILRV 253 (253)
Q Consensus 248 i~vw~l 253 (253)
-+||+|
T Consensus 345 g~I~ri 350 (353)
T 2g8s_A 345 GELLKV 350 (353)
T ss_dssp EEEEEE
T ss_pred CEEEEE
Confidence 566654
No 340
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=92.45 E-value=0.66 Score=35.69 Aligned_cols=110 Identities=8% Similarity=0.028 Sum_probs=63.4
Q ss_pred CCEEEEEeCCCeEEEEeccCceeeeeeecc-cccEEEEEec----CCCeEEEE-eCCCcEEEEEcCCCCCeeeeeccC-C
Q 035558 55 PRRIGTSSIDTTCTIWDIEREAVDTQLIAH-DKEVYDIAWG----GVGVFASV-SADGSVRVFDLRDKEHSTIIYESS-E 127 (253)
Q Consensus 55 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~----~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~-~ 127 (253)
+.+++.++.||.|.-+|.++|+....++.. ..++....-. ++..++.. +.||.|..++..++.......... .
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 457888999999999999999988887643 1222222111 22333333 589999999988764221111100 0
Q ss_pred CCCCeeE---EEe-eC---CCCCEEEEEEeCCCeEEEEECCCCCC
Q 035558 128 PDTPLVR---LGW-NK---QDPRYMATIIMDSAKVVVLDIRFPTL 165 (253)
Q Consensus 128 ~~~~i~~---~~~-~~---~~~~~l~~~~~~~~~i~~~d~~~~~~ 165 (253)
...++.. ... .+ ..+..+++++.++. +...|+++++.
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~-l~ald~~tG~~ 133 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTI-MYTINMLNGEI 133 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEE-EEEEETTTCCE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCE-EEEEECCCCcE
Confidence 0112211 000 00 03456778888887 88888887663
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.17 E-value=5 Score=34.22 Aligned_cols=109 Identities=6% Similarity=-0.022 Sum_probs=60.2
Q ss_pred CCCEEEEEeCCC--eEEEEeccCceeeee-----eecccccEEEEEec-C-CCeEEEEeC--C-----CcEEEEEcCCCC
Q 035558 54 EPRRIGTSSIDT--TCTIWDIEREAVDTQ-----LIAHDKEVYDIAWG-G-VGVFASVSA--D-----GSVRVFDLRDKE 117 (253)
Q Consensus 54 ~~~~l~~~~~dg--~i~vwd~~~~~~~~~-----~~~~~~~v~~~~~~-~-~~~l~~~~~--d-----g~i~i~d~~~~~ 117 (253)
++.+++.|+.++ .+.+||..+.+-... +........++.+. + +.+++.|+. + ..+..||+.+..
T Consensus 500 ~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 500 DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 678888887655 689999987652221 11111222334445 3 667777776 2 358899998876
Q ss_pred C-----eeeeecc-CCCCCCeeEEEeeCCCCCEEEEEEeCC-------CeEEEEECCCCC
Q 035558 118 H-----STIIYES-SEPDTPLVRLGWNKQDPRYMATIIMDS-------AKVVVLDIRFPT 164 (253)
Q Consensus 118 ~-----~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~~~-------~~i~~~d~~~~~ 164 (253)
. ...+... .........+.+. ++.+++.|+.++ ..+.+||..+..
T Consensus 580 w~~~~~W~~~~~~p~~~R~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 580 ATEPITVIKKLQHPLFQRYGSQIKYIT--PRKLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp SSCCEEEEEEEECGGGCCBSCEEEEEE--TTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred cccceEEEEcCCCCCCCcccceEEEeC--CCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 2 2222221 1111122223332 367777777431 238899987643
No 342
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=91.52 E-value=3.8 Score=31.55 Aligned_cols=104 Identities=7% Similarity=0.019 Sum_probs=56.9
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee---eee----ecccccEEEEEec-C---CCeEEEEe-C------
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD---TQL----IAHDKEVYDIAWG-G---VGVFASVS-A------ 104 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~----~~~~~~v~~~~~~-~---~~~l~~~~-~------ 104 (253)
.....++|. ++++.|+.+...|.|++++.. ++.. ..+ .........|+++ + +..|..+. .
T Consensus 18 ~~P~~i~~~-pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFL-PDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEEC-STTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCcEEEEEc-CCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 345789999 788834455678999999854 3321 111 1123456889998 4 45444442 2
Q ss_pred -CCcEEEEEcCCCC----Ceeeee-ccC---CCCCCeeEEEeeCCCCCEEEEEE
Q 035558 105 -DGSVRVFDLRDKE----HSTIIY-ESS---EPDTPLVRLGWNKQDPRYMATII 149 (253)
Q Consensus 105 -dg~i~i~d~~~~~----~~~~~~-~~~---~~~~~i~~~~~~~~~~~~l~~~~ 149 (253)
...|..+++.... ....+. ... ........|+|.| ++.+.++.+
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G 148 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALG 148 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEEC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEEC
Confidence 2356666665431 112222 111 1111346799999 776555543
No 343
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.57 E-value=4.1 Score=30.26 Aligned_cols=180 Identities=13% Similarity=0.089 Sum_probs=94.4
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeee
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTII 122 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 122 (253)
..|..++.. . ...+.-. ||.|+.|-....-.+.........|..++......++. . ||.|..|-.........
T Consensus 24 ~~i~~ia~G-~--~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~- 96 (282)
T 3qhy_B 24 SGVDAIAGG-Y--FHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTV- 96 (282)
T ss_dssp SSCCEEEEC-S--SEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCC-
T ss_pred CCCcEEEeC-C--CeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCC-
Confidence 357777765 2 2333335 89999997654322211111234676776653333444 4 99999997665432111
Q ss_pred eccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEE
Q 035558 123 YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIW 202 (253)
Q Consensus 123 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iw 202 (253)
+......|..++.-. ...+.-. ++. |+.|-.....+ +-........|..++...+. .++. . ||.+..|
T Consensus 97 --P~~~~~~v~~ia~G~---~hs~al~-~G~-v~~wG~n~~gq-lg~~~~~~~~i~~i~~G~~~--~~~l-~-~G~v~~w 164 (282)
T 3qhy_B 97 --PAEARSGVDAIAAGA---WASYALK-DGK-VIAWGDDSDGQ-TTVPAEAQSGVTALDGGVYT--ALAV-K-NGGVIAW 164 (282)
T ss_dssp --CGGGSSSEEEEEEET---TEEEEEE-TTE-EEEEECCTTST-TSCCGGGGSSEEEEEECSSE--EEEE-E-TTEEEEE
T ss_pred --CcccCCCeEEEECcC---CEEEEEe-CCe-EEEecCCCCCc-CCCCccCCCCeEEEEcccCE--EEEE-E-CCEEEEe
Confidence 111123677777653 3334444 777 99997655332 11111123457777665443 3333 3 7889888
Q ss_pred eccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEE
Q 035558 203 DLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQIL 251 (253)
Q Consensus 203 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw 251 (253)
-.....+.. ........|..++..... .++. .++.+..|
T Consensus 165 G~n~~gqlg-------~p~~~~~~v~~i~~G~~h--s~al-~~G~v~~w 203 (282)
T 3qhy_B 165 GDNYFGQTT-------VPAEAQSGVDDVAGGIFH--SLAL-KDGKVIAW 203 (282)
T ss_dssp ECCTTSTTS-------CCGGGGSSEEEEEECSSE--EEEE-ETTEEEEE
T ss_pred cCCCCCCCC-------CceecCCCeEEEEecCCE--EEEE-ECCeEEEE
Confidence 766543321 111113456666665442 3444 57777666
No 344
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=90.41 E-value=4.5 Score=30.44 Aligned_cols=135 Identities=9% Similarity=0.023 Sum_probs=70.4
Q ss_pred CCCEEEEEe--CCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCC--------------CcEEEEEcCCC
Q 035558 54 EPRRIGTSS--IDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSAD--------------GSVRVFDLRDK 116 (253)
Q Consensus 54 ~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d--------------g~i~i~d~~~~ 116 (253)
++..+.-.. .++.|+..+..... ...+.. ..+. -++ +++.|+-+... ..|+..++...
T Consensus 24 ~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~--~~~~--~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~ 98 (302)
T 3s25_A 24 SDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN--DTAM--YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH 98 (302)
T ss_dssp ETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE--EEEE--EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC
T ss_pred eCCEEEEEeCCCCceEEEEcCCCCC-CEEccC--Ccee--eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC
Confidence 355554443 24566666665333 333332 2222 234 67777666543 35777777766
Q ss_pred CCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE---eCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEe
Q 035558 117 EHSTIIYESSEPDTPLVRLGWNKQDPRYMATII---MDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTA 193 (253)
Q Consensus 117 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 193 (253)
+...+. .. . ...|++ +++.|+-.. .....|...++.... ...+..+.. .+++|++..+..+.
T Consensus 99 ~~~~l~-~~-----~--~~~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~ 163 (302)
T 3s25_A 99 GSTVLD-PD-----P--CIYASL-IGNYIYYLHYDTQTATSLYRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNN 163 (302)
T ss_dssp CCEEEE-CS-----C--EEEEEE-ETTEEEEEEESSSSCEEEEEEETTSCC--CEEEESSCC----CCSEEETTEEEEEC
T ss_pred cceEee-cC-----C--ccEEEE-eCCEEEEEeecCCCCceEEEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEe
Confidence 532222 11 1 236777 777777766 223236666665432 344443332 45678885334454
Q ss_pred cCCCcEEEEeccCCC
Q 035558 194 GDDSQALIWDLSSMG 208 (253)
Q Consensus 194 ~~dg~i~iwd~~~~~ 208 (253)
.....|..-++....
T Consensus 164 ~g~~~Iy~~~l~g~~ 178 (302)
T 3s25_A 164 PKNGQLYRYDTASQS 178 (302)
T ss_dssp TTTCCEEEEETTTTE
T ss_pred CCCceEEEEECCCCC
Confidence 446677777766543
No 345
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=90.35 E-value=1.3 Score=36.51 Aligned_cols=80 Identities=5% Similarity=0.047 Sum_probs=51.8
Q ss_pred ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCC----CC-CeeeccCCCceeEEEEcCCCCceEEEEcCCcE
Q 035558 174 QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGG----LD-PILAYTAGAEIEQLQWSSSQPDWVAIAFSTKL 248 (253)
Q Consensus 174 ~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i 248 (253)
......+..+|+|...+++|-.+.++.++|++......... .. ......-+......+|.++|..+.+.--|..|
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqv 401 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQV 401 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceE
Confidence 34567789999995444556689999999998633211000 00 01112235667788999999544566689999
Q ss_pred EEEEC
Q 035558 249 QILRV 253 (253)
Q Consensus 249 ~vw~l 253 (253)
.-|++
T Consensus 402 vkWni 406 (638)
T 3sbq_A 402 VKWNM 406 (638)
T ss_dssp EEEEH
T ss_pred EEEec
Confidence 99974
No 346
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=89.28 E-value=7.4 Score=31.24 Aligned_cols=106 Identities=13% Similarity=0.055 Sum_probs=60.2
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee--eeeeec------ccccEEEEEec-C---CCeEEEEeC------
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV--DTQLIA------HDKEVYDIAWG-G---VGVFASVSA------ 104 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~------~~~~v~~~~~~-~---~~~l~~~~~------ 104 (253)
.....++|. ++++++++-...+.|++++..+++. +..+.. .......|+|+ + +..|..+..
T Consensus 27 ~~P~~~a~~-pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWG-PDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEc-CCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345699999 8888777654435798888654542 222211 24567799998 4 555554432
Q ss_pred -------CCcEEEEEcCCCC----Ceeeeec-c-CCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558 105 -------DGSVRVFDLRDKE----HSTIIYE-S-SEPDTPLVRLGWNKQDPRYMATIIM 150 (253)
Q Consensus 105 -------dg~i~i~d~~~~~----~~~~~~~-~-~~~~~~i~~~~~~~~~~~~l~~~~~ 150 (253)
...|.-++..... ....+.. . .........|+|.| ++.+.++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECC
Confidence 2345556554321 1122221 1 11123578899999 8877766543
No 347
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=88.86 E-value=4.2 Score=33.70 Aligned_cols=74 Identities=16% Similarity=0.071 Sum_probs=52.7
Q ss_pred CeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC--------C----eeeecccccceeEEEEecCCCCeEEEecCCCc
Q 035558 131 PLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL--------P----VVELQRHQASVNAIAWAPHSSCHICTAGDDSQ 198 (253)
Q Consensus 131 ~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~--------~----~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 198 (253)
....+..+| +++++++++.-..++.++|.++... + +.+.. -.-.....+|.++| +...+.--|..
T Consensus 324 sPHGv~vsP-DGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfidSq 400 (638)
T 3sbq_A 324 NPHGCNTSS-DGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFIDSQ 400 (638)
T ss_dssp SCCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETTTTE
T ss_pred CCcceeeCC-CCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeeecce
Confidence 344578899 9999998887666699999984210 0 11112 22345678999998 56677779999
Q ss_pred EEEEeccCC
Q 035558 199 ALIWDLSSM 207 (253)
Q Consensus 199 i~iwd~~~~ 207 (253)
|.-|++...
T Consensus 401 vvkWni~~a 409 (638)
T 3sbq_A 401 VVKWNMEEA 409 (638)
T ss_dssp EEEEEHHHH
T ss_pred EEEEeccHH
Confidence 999999763
No 348
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=88.55 E-value=6.1 Score=29.35 Aligned_cols=180 Identities=13% Similarity=0.121 Sum_probs=95.0
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeee
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTII 122 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 122 (253)
..|..++.. . ...++. . ||.|+.|-....-.+.....-...|..++.. ....+.-. ||.|..|-..........
T Consensus 63 ~~i~~ia~G-~-~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G-~~hs~al~-~G~v~~wG~n~~gqlg~~ 136 (282)
T 3qhy_B 63 SGVDAIAAG-N-YHSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAG-AWASYALK-DGKVIAWGDDSDGQTTVP 136 (282)
T ss_dssp SCCCEEEEC-S-SEEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEE-TTEEEEEE-TTEEEEEECCTTSTTSCC
T ss_pred CCEEEEEeC-C-CEEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECc-CCEEEEEe-CCeEEEecCCCCCcCCCC
Confidence 467777765 2 233333 5 8999999765432221111113467777665 23333334 999999977653321111
Q ss_pred eccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEE
Q 035558 123 YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIW 202 (253)
Q Consensus 123 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iw 202 (253)
......|..++.-. ...+.-. ++. |..|-.....+ +..-..-...|..++..... .++. .||.+..|
T Consensus 137 ---~~~~~~i~~i~~G~---~~~~~l~-~G~-v~~wG~n~~gq-lg~p~~~~~~v~~i~~G~~h--s~al--~~G~v~~w 203 (282)
T 3qhy_B 137 ---AEAQSGVTALDGGV---YTALAVK-NGG-VIAWGDNYFGQ-TTVPAEAQSGVDDVAGGIFH--SLAL--KDGKVIAW 203 (282)
T ss_dssp ---GGGGSSEEEEEECS---SEEEEEE-TTE-EEEEECCTTST-TSCCGGGGSSEEEEEECSSE--EEEE--ETTEEEEE
T ss_pred ---ccCCCCeEEEEccc---CEEEEEE-CCE-EEEecCCCCCC-CCCceecCCCeEEEEecCCE--EEEE--ECCeEEEE
Confidence 11122566666532 2333333 676 99997655332 11111113467777766543 4444 59999999
Q ss_pred eccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEE
Q 035558 203 DLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQIL 251 (253)
Q Consensus 203 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw 251 (253)
-.....+.- ........|..|+-... ..++.. ++.+..|
T Consensus 204 G~n~~gqlg-------~p~~~~~~v~~i~~G~~--h~~al~-~g~v~~w 242 (282)
T 3qhy_B 204 GDNRYKQTT-------VPTEALSGVSAIASGEW--YSLALK-NGKVIAW 242 (282)
T ss_dssp ECCTTSTTC-------CCGGGGSSCCEEEECSS--CEEEEE-TTEEEEE
T ss_pred ECCCCCCCC-------CCcccCCCceEEEcCCC--EEEEEE-CCEEEEe
Confidence 766543322 11112245667766554 344555 7777776
No 349
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=87.18 E-value=9 Score=29.79 Aligned_cols=150 Identities=11% Similarity=0.023 Sum_probs=75.6
Q ss_pred CCeeEEEecCCCCCEEEEEeCCC----eEEEEeccCce---eeee---eec--------ccccEEEEEec--C-CCeEEE
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDT----TCTIWDIEREA---VDTQ---LIA--------HDKEVYDIAWG--G-VGVFAS 101 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg----~i~vwd~~~~~---~~~~---~~~--------~~~~v~~~~~~--~-~~~l~~ 101 (253)
..|.+|++.|.+...+..++..| .|...+ ..++ .+.. +.. ....|.++++. + ...+..
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 46899999954555566665555 444332 2222 1111 110 11257778886 3 667777
Q ss_pred EeCCCcEEEEEcCCCCCeeeeecc----------------CCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC
Q 035558 102 VSADGSVRVFDLRDKEHSTIIYES----------------SEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL 165 (253)
Q Consensus 102 ~~~dg~i~i~d~~~~~~~~~~~~~----------------~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~ 165 (253)
+...+.|...+= .++....+... ......+.+|.++|.+...+.++...+. |...+-.. +
T Consensus 134 g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~gg-l~~s~DgG-~- 209 (394)
T 3b7f_A 134 GTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGG-VFESTDAG-T- 209 (394)
T ss_dssp EEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBE-EEEESSTT-S-
T ss_pred EecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCC-EEEECCCC-C-
Confidence 666665544422 22222222110 0112357889998855566666666655 54443221 1
Q ss_pred Ceeeecc-----c--------ccceeEEEEecCCCCeEEEecCCC
Q 035558 166 PVVELQR-----H--------QASVNAIAWAPHSSCHICTAGDDS 197 (253)
Q Consensus 166 ~~~~~~~-----~--------~~~i~~~~~~~~~~~~l~~~~~dg 197 (253)
.-..+.. + ...+.+++++|..+..|+.+...+
T Consensus 210 tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 210 DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 1111110 0 134889999997434666666544
No 350
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=85.88 E-value=11 Score=29.49 Aligned_cols=172 Identities=9% Similarity=0.073 Sum_probs=95.7
Q ss_pred eEEEEeccCc--eeeeeeec------ccccEEEEEec-C-------CCeEEEE-eCCCcEEEEEcCCCCCeeeeeccCCC
Q 035558 66 TCTIWDIERE--AVDTQLIA------HDKEVYDIAWG-G-------VGVFASV-SADGSVRVFDLRDKEHSTIIYESSEP 128 (253)
Q Consensus 66 ~i~vwd~~~~--~~~~~~~~------~~~~v~~~~~~-~-------~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~ 128 (253)
.|.+||+.+. +.++.+.- ....+.++++. . +.++..+ +..+-|.++|+.+++..+........
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 6889999999 87776642 23457777776 2 2333333 34677999999988755544211111
Q ss_pred ---------------CCCeeEEEeeCCC----CCEEEEEEeCCCeEEEEE---CCCCC--CCeeeecccc--cceeEEEE
Q 035558 129 ---------------DTPLVRLGWNKQD----PRYMATIIMDSAKVVVLD---IRFPT--LPVVELQRHQ--ASVNAIAW 182 (253)
Q Consensus 129 ---------------~~~i~~~~~~~~~----~~~l~~~~~~~~~i~~~d---~~~~~--~~~~~~~~~~--~~i~~~~~ 182 (253)
...+..|+++| + ++.|......+..+.-.. +++.. ..++.+.... ..-..++.
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp-~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGD-RDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECC-CCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecC-CcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 13678888988 4 667777666653233333 22221 1122222111 22335667
Q ss_pred e-cCCCCeEEEecCCCcEEEEeccC-CCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558 183 A-PHSSCHICTAGDDSQALIWDLSS-MGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA 241 (253)
Q Consensus 183 ~-~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 241 (253)
. .+| .++++--..+.|..|+..+ .-.+. ..........-..+..+.+.+++..++.
T Consensus 283 D~~~G-~ly~~~~~~~aI~~w~~~~~~~~~~--n~~~l~~d~~l~~pd~~~i~~~g~Lwv~ 340 (381)
T 3q6k_A 283 DPKTK-VIFFAEANTKQVSCWNTQKMPLRMK--NTDVVYTSSRFVFGTDISVDSKGGLWFM 340 (381)
T ss_dssp CTTTC-EEEEEESSSSEEEEEETTSCSBCGG--GEEEEEECTTCCSEEEEEECTTSCEEEE
T ss_pred eCCCC-eEEEEeccCCeEEEEeCCCCccccC--ceEEEEECCCccccCeEEECCCCeEEEE
Confidence 5 556 5777778899999999876 22111 0000111112334677777777754443
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=85.10 E-value=14 Score=29.85 Aligned_cols=109 Identities=9% Similarity=0.153 Sum_probs=57.5
Q ss_pred ccEEEEEec-CCC-eEEEEeCCCcEEEEEcCCCCCeeeeecc---C------CCCCCeeEEEeeCC---CCCEEEEEEeC
Q 035558 86 KEVYDIAWG-GVG-VFASVSADGSVRVFDLRDKEHSTIIYES---S------EPDTPLVRLGWNKQ---DPRYMATIIMD 151 (253)
Q Consensus 86 ~~v~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~------~~~~~i~~~~~~~~---~~~~l~~~~~~ 151 (253)
...+.|+|. ++. .++++...|.|++++.........+... . ..+.....|+|+|. ++.+.++-+..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 356789999 775 4555678899999975432111111110 0 12457889999983 23444433321
Q ss_pred C-----------CeEEEEECCCC--C-------CCeeeec--ccccceeEEEEecCCCCeEEEecC
Q 035558 152 S-----------AKVVVLDIRFP--T-------LPVVELQ--RHQASVNAIAWAPHSSCHICTAGD 195 (253)
Q Consensus 152 ~-----------~~i~~~d~~~~--~-------~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~ 195 (253)
. ..|.-|.+... . +.+..+. .....-..|+|.||| ++.++.+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG-~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDG-FLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTS-CEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCC-cEEEEeCC
Confidence 1 12555665421 0 1122221 112345789999999 45555443
No 352
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=82.64 E-value=13 Score=27.86 Aligned_cols=138 Identities=9% Similarity=-0.012 Sum_probs=69.3
Q ss_pred ecCCCCCEEEEEeCC--------------CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEe--CC--CcEEE
Q 035558 50 WNEAEPRRIGTSSID--------------TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVS--AD--GSVRV 110 (253)
Q Consensus 50 ~~~~~~~~l~~~~~d--------------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~--~d--g~i~i 110 (253)
++ +++++|+-.... ..|+..++...+... +.. ... ..|+ +++.|+-.. .+ ..|..
T Consensus 60 i~-~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~--~~~--~~~s~~g~~Iy~~~~~~~~~~~Iy~ 133 (302)
T 3s25_A 60 IN-ADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP--DPC--IYASLIGNYIYYLHYDTQTATSLYR 133 (302)
T ss_dssp EE-ECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC--SCE--EEEEEETTEEEEEEESSSSCEEEEE
T ss_pred EE-EcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec--CCc--cEEEEeCCEEEEEeecCCCCceEEE
Confidence 45 567766655432 367777777654322 321 122 2455 677777665 33 34555
Q ss_pred EEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeE
Q 035558 111 FDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHI 190 (253)
Q Consensus 111 ~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 190 (253)
-++..... ..+... .+ .+++| +++.|+-.+.....|...++..... ..+.. +... ..+.|++. +|
T Consensus 134 ~~~dGs~~-~~lt~~-----~~--~~~~~-~g~~iy~t~~g~~~Iy~~~l~g~~~--~~l~~--~~~~-~~~~P~g~-~i 198 (302)
T 3s25_A 134 IRIDGEEK-KKIKNH-----YL--FTCNT-SDRYFYYNNPKNGQLYRYDTASQSE--ALFYD--CNCY-KPVVLDDT-NV 198 (302)
T ss_dssp EETTSCCC-EEEESS-----CC--CCSEE-ETTEEEEECTTTCCEEEEETTTTEE--EEEEC--SCEE-EEEEEETT-EE
T ss_pred EECCCCCe-EEEeCC-----Cc--eEeeE-ECCEEEEEeCCCceEEEEECCCCCE--EEEeC--CCcc-ceeeecCC-EE
Confidence 55554432 222221 11 34666 6666665554333388888765432 23321 2222 34668884 55
Q ss_pred EEecC-C-CcEEEEeccCCC
Q 035558 191 CTAGD-D-SQALIWDLSSMG 208 (253)
Q Consensus 191 ~~~~~-d-g~i~iwd~~~~~ 208 (253)
+-... + ..|..-++....
T Consensus 199 y~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 199 YYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp EEEEGGGTTEEEEECSSSCC
T ss_pred EEEEcCCCcEEEEEECCCCC
Confidence 54433 3 345555555433
No 353
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=81.68 E-value=26 Score=30.46 Aligned_cols=150 Identities=9% Similarity=-0.026 Sum_probs=77.5
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec-------ccccEEEEEec--CCCeEEEEeCCCc----EE
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA-------HDKEVYDIAWG--GVGVFASVSADGS----VR 109 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~~--~~~~l~~~~~dg~----i~ 109 (253)
..|.+|+++|.+...++.++..+.|...+=. ++.=..+.. ....+.+|++. +.+.++.+..+.. -.
T Consensus 15 g~i~~i~~~p~~~~~~~a~~~~ggv~rS~Dg-G~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~ 93 (789)
T 1sqj_A 15 GYITGIVAHPKTKDLLYARTDIGGAYRWDAG-TSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA 93 (789)
T ss_dssp SCEEEEEECSSSTTCEEEEESSSCEEEEETT-TTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred CcEEEEEECCCCCCEEEEEecCCCEEEecCC-CCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence 5799999997677778888877776554422 321111211 12468899987 4444544432211 23
Q ss_pred EEEc-CCCCCeeeeeccCC------CCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeec------ccccc
Q 035558 110 VFDL-RDKEHSTIIYESSE------PDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQ------RHQAS 176 (253)
Q Consensus 110 i~d~-~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~------~~~~~ 176 (253)
||.- ..++....+..... ....+..++++|.+.+.+.++...+. | |-.....+.-..+. .....
T Consensus 94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g-l--~~S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG-I--WKSSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC-E--EEESSTTSSCEEETTSCCCCSTTTC
T ss_pred EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC-E--EEECCCCcccCCCccCccccCCCCC
Confidence 3333 33333333321111 11135678898866667777664444 3 32222221111111 11245
Q ss_pred eeEEEEecCCCCeEEEecCC
Q 035558 177 VNAIAWAPHSSCHICTAGDD 196 (253)
Q Consensus 177 i~~~~~~~~~~~~l~~~~~d 196 (253)
+..+.++|..+..++.+..+
T Consensus 171 ~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEEECTTSTTCEEEEESS
T ss_pred eEEEEECCCCCCEEEEEEcC
Confidence 78899998654466666544
No 354
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=77.95 E-value=4.4 Score=36.02 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=30.8
Q ss_pred CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
.+.++... ++..++++-+.|+++|+|++.+++++.+.
T Consensus 237 ~~~~~~~~-~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFL-STYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEE-TTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeec-CCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 45666766 67889999999999999999999877654
No 355
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=75.79 E-value=26 Score=27.18 Aligned_cols=141 Identities=9% Similarity=-0.023 Sum_probs=69.6
Q ss_pred CCEEEEEeCCCeEEEEeccC-ceeeeee--ecccccEEEEEec--CCCeEEEEeCCC----cEEEEEcCCCCCeeeeecc
Q 035558 55 PRRIGTSSIDTTCTIWDIER-EAVDTQL--IAHDKEVYDIAWG--GVGVFASVSADG----SVRVFDLRDKEHSTIIYES 125 (253)
Q Consensus 55 ~~~l~~~~~dg~i~vwd~~~-~~~~~~~--~~~~~~v~~~~~~--~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~ 125 (253)
...|..|+..| +.+++... ++.-..+ ......|.+|++. +...+..+...| .|...+ ..++....+...
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~ 99 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRP 99 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcc
Confidence 45677788777 55555432 2211111 1223568999987 456666666555 343332 223222222111
Q ss_pred ---CC--------CCCCeeEEEeeCCC-CCEEEEEEeCCCeEEEEECCCCCCCeeeec-------------------ccc
Q 035558 126 ---SE--------PDTPLVRLGWNKQD-PRYMATIIMDSAKVVVLDIRFPTLPVVELQ-------------------RHQ 174 (253)
Q Consensus 126 ---~~--------~~~~i~~~~~~~~~-~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-------------------~~~ 174 (253)
.. ....|.++++.|.+ ...+.+++..+. |...+-.. . .-..+. ...
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~gg-l~~S~DgG-~-tW~~~~~~~~~p~~~~~~~~~~~g~~~~ 176 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQG-LFRSTDHG-A-SWEPVAGFNDHPMRRAWTGGEQDGTPDG 176 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTE-EEEESSTT-S-BCEECHHHHTCTTHHHHHCCC----CCC
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCc-EEEEcCCC-C-CeEECcCccCCccccccccccccCCCCC
Confidence 10 11257788998754 566777766666 65543221 1 111111 012
Q ss_pred cceeEEEEecCCCCeEEEecCCCcEE
Q 035558 175 ASVNAIAWAPHSSCHICTAGDDSQAL 200 (253)
Q Consensus 175 ~~i~~~~~~~~~~~~l~~~~~dg~i~ 200 (253)
..+.+|.++|..+..|+.+..++.|.
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~ 202 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVF 202 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEE
T ss_pred CceeEEEECCCCCCEEEEEECCCCEE
Confidence 35788999985334555554444433
No 356
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=75.08 E-value=8.5 Score=32.88 Aligned_cols=36 Identities=11% Similarity=0.138 Sum_probs=28.6
Q ss_pred CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558 44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI 82 (253)
Q Consensus 44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 82 (253)
.|.++.+ +..++++-+.|.++|+|++.+++++....
T Consensus 223 ~Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 223 VISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 4555554 37799999999999999999998776654
No 357
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=74.75 E-value=27 Score=26.90 Aligned_cols=158 Identities=12% Similarity=0.078 Sum_probs=84.6
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee--eeee----ecccccEEEEEec-C---CCeEEEE---eCCCcEE
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV--DTQL----IAHDKEVYDIAWG-G---VGVFASV---SADGSVR 109 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~----~~~~~~v~~~~~~-~---~~~l~~~---~~dg~i~ 109 (253)
.....++|. ++++++++--..|.|++++...++. +..+ .........|+++ + +..|... ..++.|.
T Consensus 32 ~~P~~ia~~-pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 32 NSPWGLAPL-PGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp SSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCceEEEEc-CCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 456799999 7888777655489999998765542 2111 1234567899997 3 3444432 2345566
Q ss_pred EEEcCCCC-------Ceeeee-ccC-CCCCCeeEEEeeCCCCCEEEEEEe-------------CCCeEEEEECCCC----
Q 035558 110 VFDLRDKE-------HSTIIY-ESS-EPDTPLVRLGWNKQDPRYMATIIM-------------DSAKVVVLDIRFP---- 163 (253)
Q Consensus 110 i~d~~~~~-------~~~~~~-~~~-~~~~~i~~~~~~~~~~~~l~~~~~-------------~~~~i~~~d~~~~---- 163 (253)
-|.+.... ....+. ... ........|+|.| ++.+.++.+. .+. |.-++....
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~-IlRi~~dG~ip~~ 188 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGK-ILRMTPDGEPAPG 188 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTC-EEEECTTSSBCTT
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCE-EEEEeCCCCccCC
Confidence 66665421 112222 111 1122456799999 7877666542 234 544454422
Q ss_pred ----CCCeeeecccccceeEEEEecCCCCeEEEe-cCCCcEEEEeccC
Q 035558 164 ----TLPVVELQRHQASVNAIAWAPHSSCHICTA-GDDSQALIWDLSS 206 (253)
Q Consensus 164 ----~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~ 206 (253)
...+. -.+|. ....++|+|++ .++++- +.|+.=.|--+..
T Consensus 189 nPf~~~~i~-a~G~R-Np~Gla~dp~G-~L~~~d~g~~~~deln~i~~ 233 (347)
T 3das_A 189 NPFPGSPVY-SYGHR-NVQGLAWDDKQ-RLFASEFGQDTWDELNAIKP 233 (347)
T ss_dssp CSSTTCCEE-EBCCS-BCCEEEECTTC-CEEEEECCSSSCEEEEEECT
T ss_pred CCCCCCeEE-eeCCC-CcceEEECCCC-CEEEEecCCCCCceeeEEcC
Confidence 00011 12343 34689999987 344433 3344334444433
No 358
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.59 E-value=4.9 Score=36.50 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=29.7
Q ss_pred CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558 44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL 81 (253)
Q Consensus 44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 81 (253)
.+.+++.. .+..++++-+.|+++|+|++.+++++.+.
T Consensus 239 ~~vs~~~~-~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFL-STYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEE-TTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeecc-CCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 34455555 67789999999999999999999877654
No 359
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=62.86 E-value=16 Score=33.23 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=26.3
Q ss_pred EEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeee
Q 035558 88 VYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTI 121 (253)
Q Consensus 88 v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~ 121 (253)
+.+++.. +..++++-+.|+++|+|++.++++...
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t 274 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 274 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEe
Confidence 3344445 677899999999999999999875444
No 360
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=62.45 E-value=75 Score=27.28 Aligned_cols=107 Identities=16% Similarity=0.013 Sum_probs=58.4
Q ss_pred CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecc-------cccEEEEEec--CCCeEEEEeCC-------Cc
Q 035558 44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAH-------DKEVYDIAWG--GVGVFASVSAD-------GS 107 (253)
Q Consensus 44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~~--~~~~l~~~~~d-------g~ 107 (253)
.|..|+++|.+...++.+...+.|...+-. ++.-..+..+ ...|.+|+++ +.+.++.+... +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~-G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPS-TETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETT-TTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCC-CCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 789999997677777778766766655432 2211112111 2458899998 44455444321 12
Q ss_pred EEEEEcC-CCCCeeeeeccCC------CCCCeeEEEeeCCCCCEEEEEEeC
Q 035558 108 VRVFDLR-DKEHSTIIYESSE------PDTPLVRLGWNKQDPRYMATIIMD 151 (253)
Q Consensus 108 i~i~d~~-~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~l~~~~~~ 151 (253)
..||.-. .++....+..... ....+..|+++|.+.+.++++...
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 4455443 3333333322110 011346799999777777776643
No 361
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=58.04 E-value=40 Score=28.20 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=33.8
Q ss_pred eeEEEEecCCCCeEEEecCC------------CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558 177 VNAIAWAPHSSCHICTAGDD------------SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA 241 (253)
Q Consensus 177 i~~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 241 (253)
.--|+|+|.| .+++.-..+ ..+.+.+..+++... .........++.++|+|+++.|+.
T Consensus 478 PDNL~fd~~G-~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~r------f~~~P~gaE~TG~~fspDg~tlfv 547 (592)
T 3zwu_A 478 PDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRR------FMVGPIGCEVTGISFSPDQKTLFV 547 (592)
T ss_dssp EEEEEECTTC-CEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEE------EEECCTTCEEEEEEECTTSSEEEE
T ss_pred CcceEECCCC-CEEEEecCCCcccccccccccceEEEEeCCCCeEEE------EEeCCCCccCcCeeECCCCCEEEE
Confidence 3558999998 444443321 123344443333211 222235789999999999987764
No 362
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=55.20 E-value=57 Score=27.20 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=34.7
Q ss_pred ceeEEEEecCCCCeEE-EecC-----------CCcEEEEeccCCCCCCCCCCCCeeec-cCCCceeEEEEcCCCCceEEE
Q 035558 176 SVNAIAWAPHSSCHIC-TAGD-----------DSQALIWDLSSMGQPVEGGLDPILAY-TAGAEIEQLQWSSSQPDWVAI 242 (253)
Q Consensus 176 ~i~~~~~~~~~~~~l~-~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~ 242 (253)
....|.|.++|. +.+ +=.. ...+..++..+++.. .... .....++.++|+|+++.|+..
T Consensus 477 sPDnL~fd~~G~-LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~-------~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIR-------RFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCC-EEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEE-------EEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCC-EEEEeCCCcCccccccccCCceEEEEeCCCCeEE-------EEEeCCCCccccCCEECCCCCEEEEE
Confidence 456789999984 444 3221 114444544444321 1222 235679999999999877643
No 363
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=54.73 E-value=1e+02 Score=26.44 Aligned_cols=195 Identities=10% Similarity=0.108 Sum_probs=94.1
Q ss_pred eeEEE-ecCCCCCEEEEE-eCCC----eEEEEeccCceeeee-ee-cccc------cEEEEEec-CCCeEEEE-------
Q 035558 45 LTSFD-WNEAEPRRIGTS-SIDT----TCTIWDIEREAVDTQ-LI-AHDK------EVYDIAWG-GVGVFASV------- 102 (253)
Q Consensus 45 v~~~~-~~~~~~~~l~~~-~~dg----~i~vwd~~~~~~~~~-~~-~~~~------~v~~~~~~-~~~~l~~~------- 102 (253)
...+. ++ +++++++.+ +..| .++++|+++++.+.. +. .-+. ....++|. ++..+++.
T Consensus 131 ~~g~~~~~-~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 131 YRGVSNCF-QNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEECS-SSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCB
T ss_pred EeceeecC-CCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCc
Confidence 34455 66 677766544 3333 799999999886642 22 0001 11334777 44444432
Q ss_pred ---eCCCcEEEEEcCCCCC-eeeeeccCCCCCCeeEEEeeCCCCC-----EEEEEEeC--CCeEEEEECCCCCCCeeeec
Q 035558 103 ---SADGSVRVFDLRDKEH-STIIYESSEPDTPLVRLGWNKQDPR-----YMATIIMD--SAKVVVLDIRFPTLPVVELQ 171 (253)
Q Consensus 103 ---~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~-----~l~~~~~~--~~~i~~~d~~~~~~~~~~~~ 171 (253)
+.-..|+.|.+-+... -..++...... .-.....++ ++. .+++.+.+ ...+.+.|..........+.
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~-~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 287 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEY-IYVSAGKLL-SDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKIN 287 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTTS-CEEEEEESS-CTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECC
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCCc-eEEEEEEec-CCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEee
Confidence 1235688888877642 23344433322 223344455 444 24443312 23366667654332233332
Q ss_pred ccccceeEEEEecCCCCeEEEec----------CCCcEEEEeccCCCCC---CCCCCCCeeeccCCCceeEEEEcCCCCc
Q 035558 172 RHQASVNAIAWAPHSSCHICTAG----------DDSQALIWDLSSMGQP---VEGGLDPILAYTAGAEIEQLQWSSSQPD 238 (253)
Q Consensus 172 ~~~~~i~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 238 (253)
.... ..+.....+ ++++... ..+.|...++...... . ..............+..+.|..+. .
T Consensus 288 ~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~-l 362 (711)
T 4hvt_A 288 MPSD--ATLQGSFKE-YVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDK-TSLKILFTPTANEVFNFISTTKDR-V 362 (711)
T ss_dssp SCTT--CEEEEEETT-EEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGC-TTCEEEECCCTTEEEEEEEECSSC-E
T ss_pred cCCc--ceEeeeECC-EEEEEECcccccccccCCCCeEEEEECCccccccccc-ccceEEECCCCCCeEEEEEEECCE-E
Confidence 2222 122334455 4444321 3677888988764210 0 000011222335567888898763 4
Q ss_pred eEEEEcCCc
Q 035558 239 WVAIAFSTK 247 (253)
Q Consensus 239 ~~~~~~~~~ 247 (253)
+++...++.
T Consensus 363 ~~~~~~~~~ 371 (711)
T 4hvt_A 363 FLATYDNVV 371 (711)
T ss_dssp EEEEEETTE
T ss_pred EEEEEECCE
Confidence 445555554
No 364
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=54.14 E-value=20 Score=30.70 Aligned_cols=35 Identities=6% Similarity=0.030 Sum_probs=26.9
Q ss_pred cEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeee
Q 035558 87 EVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTII 122 (253)
Q Consensus 87 ~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 122 (253)
.|.++.+ +..++++-+.|.++|+|++++++.....
T Consensus 223 ~Is~~~~-~~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 223 VISCKLF-HERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp EEEEEEE-TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEecc-CCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 3554444 5789999999999999999998754443
No 365
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=53.99 E-value=41 Score=28.09 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=35.0
Q ss_pred eeEEEeeCCCCCEEEEEEeCC-----------CeEEEEECCCCCCCeeee-cc-cccceeEEEEecCCCCeEEEe
Q 035558 132 LVRLGWNKQDPRYMATIIMDS-----------AKVVVLDIRFPTLPVVEL-QR-HQASVNAIAWAPHSSCHICTA 193 (253)
Q Consensus 132 i~~~~~~~~~~~~l~~~~~~~-----------~~i~~~d~~~~~~~~~~~-~~-~~~~i~~~~~~~~~~~~l~~~ 193 (253)
.--|+|+| .+++++.-..+. ..+.+.+..+++ +..+ .. ....++.++|+||+ +.|+..
T Consensus 478 PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~--~~rf~~~P~gaE~TG~~fspDg-~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGE--IRRFMVGPIGCEVTGISFSPDQ-KTLFVG 548 (592)
T ss_dssp EEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCC--EEEEEECCTTCEEEEEEECTTS-SEEEEE
T ss_pred CcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCCe--EEEEEeCCCCccCcCeeECCCC-CEEEEE
Confidence 35588999 788766544321 124555554433 3332 22 34689999999998 566554
No 366
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=51.66 E-value=74 Score=23.91 Aligned_cols=153 Identities=7% Similarity=0.040 Sum_probs=78.9
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCCCee-----eeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC---CCC--
Q 035558 95 GVGVFASVSADGSVRVFDLRDKEHST-----IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR---FPT-- 164 (253)
Q Consensus 95 ~~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~---~~~-- 164 (253)
+...+++.+.+|.|+--.+..-.... ...........+..+.... +...++..+..|. ++-.... ...
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~-~~~~ll~~T~~G~-~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVN-THDYLFMISNEGK-LYLINAYEIKDSSRA 84 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEE-TTCEEEEEETTSE-EEEEEGGGSCC----
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEEC-CCCEEEEEECCCe-EEEEEHHHCCCCCcc
Confidence 45578888999999988765432111 0000011222454544444 4556666677776 6555443 211
Q ss_pred ---CC---eeeecccccceeEEEEec---CCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC
Q 035558 165 ---LP---VVELQRHQASVNAIAWAP---HSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS 235 (253)
Q Consensus 165 ---~~---~~~~~~~~~~i~~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 235 (253)
.+ ...+.. ...|.++...+ +. .+|+..+..|.++--.+...............+. ....+..+.....
T Consensus 85 ~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~-~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~-~~d~lv~~~~~~~ 161 (312)
T 1suu_A 85 SKGQNISELINLGD-QEEILTIKNSKDLTDD-AYLLLTTASGKIARFESTDFKAVKSRGVIVIKLN-DKDFVTSAEIVFK 161 (312)
T ss_dssp ---CBGGGTSCCCT-TCCEEEEEEESCCCTT-CEEEEEETTSEEEEEEGGGGCC----CEECBCCC-TTCCEEEEEEECT
T ss_pred CCCcChhhccCCCC-CCEEEEEEEeccCCCC-CEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecC-CCCEEEEEEEeCC
Confidence 11 111222 23444443332 23 4788889999999988865432110001111222 2556666655544
Q ss_pred CCceEEEEcCCcEEEEE
Q 035558 236 QPDWVAIAFSTKLQILR 252 (253)
Q Consensus 236 ~~~~~~~~~~~~i~vw~ 252 (253)
+..++..+.+|.+..+.
T Consensus 162 ~~~i~l~T~~G~~~r~~ 178 (312)
T 1suu_A 162 DEKVICLSKKGSAFIFN 178 (312)
T ss_dssp TCEEEEEETTSEEEEEE
T ss_pred CCEEEEEeCCCcEEEEE
Confidence 55677888888766554
No 367
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=49.93 E-value=88 Score=24.23 Aligned_cols=198 Identities=14% Similarity=0.052 Sum_probs=98.7
Q ss_pred CeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-e----------eeeeeec-ccccEEEEEec-CCCeEEEEeCCCcEEE
Q 035558 44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-A----------VDTQLIA-HDKEVYDIAWG-GVGVFASVSADGSVRV 110 (253)
Q Consensus 44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~----------~~~~~~~-~~~~v~~~~~~-~~~~l~~~~~dg~i~i 110 (253)
.|..++.. ....+.-..||.|+.|-.... + ....+.. ....+..++.. .....+....||.|..
T Consensus 54 ~i~~i~~G---~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~ 130 (389)
T 3kci_A 54 RPVQLIGG---EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYS 130 (389)
T ss_dssp CEEEEEEE---TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEE
T ss_pred ceEEEEeC---CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEE
Confidence 35555543 455556678999999964321 1 0111111 12345556666 6666777788999999
Q ss_pred EEcCCCC---------CeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC-----------Ceeee
Q 035558 111 FDLRDKE---------HSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL-----------PVVEL 170 (253)
Q Consensus 111 ~d~~~~~---------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-----------~~~~~ 170 (253)
|-..... ...+..........|..++. .....++...++. |+.|-.....+ |....
T Consensus 131 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~---G~~hs~alt~~G~-v~~wG~n~~GqLG~~~~~~~~~p~~v~ 206 (389)
T 3kci_A 131 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA---GGAHSACVTAAGD-LYTWGKGRYGRLGHSDSEDQLKPKLVE 206 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTSC-EEEEECCGGGTTCSSSCCCEEEEEECG
T ss_pred EeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe---CcCeEEEEeCCCe-EEEeCCCCCCCcCCCCCcccccceEec
Confidence 9654311 00111111111124555554 3445555566777 99996532111 11100
Q ss_pred cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCC----CCCeeecc-CCCceeEEEEcCCCCceEEEEcC
Q 035558 171 QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGG----LDPILAYT-AGAEIEQLQWSSSQPDWVAIAFS 245 (253)
Q Consensus 171 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~ 245 (253)
......|..++..... ...+.-..||.|..|-.....+.-... ..|..... ....|..++.... ..++...+
T Consensus 207 ~~~~~~v~~ia~G~g~-~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~--hs~alt~~ 283 (389)
T 3kci_A 207 ALQGHRVVDIACGSGD-AQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ--FSVALTKS 283 (389)
T ss_dssp GGTTSCEEEEEECCSS-CEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT--EEEEEETT
T ss_pred ccCCCeEEEEEEcCCC-cEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC--EEEEEeCC
Confidence 1112346666654422 355566679999999655432211000 01111111 1234666665443 45566777
Q ss_pred CcEEEE
Q 035558 246 TKLQIL 251 (253)
Q Consensus 246 ~~i~vw 251 (253)
+.+..|
T Consensus 284 G~v~~w 289 (389)
T 3kci_A 284 GAVYTW 289 (389)
T ss_dssp SCEEEE
T ss_pred CeEEEE
Confidence 777776
No 368
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=48.05 E-value=1.1e+02 Score=25.62 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=35.9
Q ss_pred CeeEEEeeCCCCCEEEEEEeC-----------CCeEEEEECCCCCCCeeeec-c-cccceeEEEEecCCCCeEEEe
Q 035558 131 PLVRLGWNKQDPRYMATIIMD-----------SAKVVVLDIRFPTLPVVELQ-R-HQASVNAIAWAPHSSCHICTA 193 (253)
Q Consensus 131 ~i~~~~~~~~~~~~l~~~~~~-----------~~~i~~~d~~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~~l~~~ 193 (253)
....|.|++ ++.+.+..... ...+..++..+++ +..+. . ....++.++|+||+ +.|+++
T Consensus 477 sPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGe--l~~fl~~P~~aEpnGiafSPD~-ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGE--IRRFMVGPIGCEVTGISFSPDQ-KTLFVG 548 (592)
T ss_dssp CEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCC--EEEEEECCTTCEEEEEEECTTS-SEEEEE
T ss_pred CCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCe--EEEEEeCCCCccccCCEECCCC-CEEEEE
Confidence 456789998 77777643221 1136666665544 33332 2 23568999999999 466554
No 369
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=45.45 E-value=95 Score=23.33 Aligned_cols=194 Identities=8% Similarity=0.056 Sum_probs=105.0
Q ss_pred CCCCEEEEEeCCCeEEEEeccCceee---------eeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCC----
Q 035558 53 AEPRRIGTSSIDTTCTIWDIEREAVD---------TQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEH---- 118 (253)
Q Consensus 53 ~~~~~l~~~~~dg~i~vwd~~~~~~~---------~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~---- 118 (253)
++...+++.+.+|.|+--.+..-+.. ..++. .+.+..+... ..+.++..+..|.++-+....-..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 45667888999999998766543211 11232 2344444444 666777888899877766542110
Q ss_pred -----eeeeeccCCCCCCeeEEEeeCC--CCCEEEEEEeCCCeEEEEECCCCCC------CeeeecccccceeEEEEecC
Q 035558 119 -----STIIYESSEPDTPLVRLGWNKQ--DPRYMATIIMDSAKVVVLDIRFPTL------PVVELQRHQASVNAIAWAPH 185 (253)
Q Consensus 119 -----~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~~~~~i~~~d~~~~~~------~~~~~~~~~~~i~~~~~~~~ 185 (253)
......... ...|..+...+. +..+++..+..|. ++...+..... ....+.. ...+..+.....
T Consensus 85 ~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~-~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~ 161 (312)
T 1suu_A 85 SKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGK-IARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFK 161 (312)
T ss_dssp ---CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSE-EEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECT
T ss_pred CCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCe-EEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCC
Confidence 000111122 224555433321 3567777788887 88877643221 1122333 345555555444
Q ss_pred CCCeEEEecCCCcEEEEeccCCCCCCC--CCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558 186 SSCHICTAGDDSQALIWDLSSMGQPVE--GGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 186 ~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~ 252 (253)
. ..++..+.+|.+..+....-..... .......+ .....|.++..-+++..++..+..+..+...
T Consensus 162 ~-~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L-~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~ 228 (312)
T 1suu_A 162 D-EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKL-KEGDLFVKVLSVKENPYLLIVSENGYGKRLN 228 (312)
T ss_dssp T-CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCC-CTTCCEEEEEECTTCSEEEEEETTSEEEEEE
T ss_pred C-CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEe-CCCCEEEEEEEECCCCeEEEEECCCceEEEE
Confidence 4 4788888899999998865321110 00001111 1255666666555555678888888776554
No 370
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=45.20 E-value=90 Score=22.98 Aligned_cols=211 Identities=7% Similarity=-0.048 Sum_probs=110.5
Q ss_pred eeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEe---ccCceeeeeeecccccEEEEEec--CCCeEEEEeC
Q 035558 30 KSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWD---IEREAVDTQLIAHDKEVYDIAWG--GVGVFASVSA 104 (253)
Q Consensus 30 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd---~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~ 104 (253)
++..++|.. ..+.+..+.-. .+.+.|+.-+..|.++--. +........+. ....|..+... +...++..+.
T Consensus 13 ir~~~g~~~--~gD~~~~~~~~-~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~ 88 (276)
T 3no0_A 13 IIPVEELPL--EKAPVVNILRV-PFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATK 88 (276)
T ss_dssp EEEGGGCCS--SCCCEEEEEEE-ETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEET
T ss_pred eeeccCCCC--CCCeEEEEEEE-CCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeC
Confidence 344455532 11566666555 4455666677888876543 32221111133 24455554323 4678999999
Q ss_pred CCcEEEEEcCCCC--C-eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC------C--Ceeeeccc
Q 035558 105 DGSVRVFDLRDKE--H-STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT------L--PVVELQRH 173 (253)
Q Consensus 105 dg~i~i~d~~~~~--~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~------~--~~~~~~~~ 173 (253)
+|.++-..+..-. . -....... ....+..+.... +...++..+..|. +..+....-. . +...+..
T Consensus 89 ~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~-~~~~ill~T~~G~-~~r~~~~eip~~gR~a~Gv~~i~L~~- 164 (276)
T 3no0_A 89 KGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSV-DETHILLFTKKGR-VARFSVREVPPSTPGARGVQGIKLEK- 164 (276)
T ss_dssp TSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECC-SSCEEEEEETTSE-EEEEEGGGSCBCCTTCCCEECCCCCT-
T ss_pred CCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeC-CCCEEEEEECCCE-EEEEEhhhCCCcCCCCCCEEEEccCC-
Confidence 9999998875432 0 00111111 223555555554 5567777788887 7666653211 0 1112222
Q ss_pred ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEE
Q 035558 174 QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQI 250 (253)
Q Consensus 174 ~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~v 250 (253)
...|.++...+++ ..++..+..|.++...+................ ...+.+..+.....+..++..+.++.+..
T Consensus 165 ~d~vv~~~~~~~~-~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir 239 (276)
T 3no0_A 165 NDETSGLRIWNGE-PYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFY 239 (276)
T ss_dssp TCCEEEEEEESSC-SEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEE
T ss_pred CCEEEEEEEeCCC-CEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEE
Confidence 2455555555555 488888999999998876544222111111111 23444555443333335666777766554
No 371
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=40.92 E-value=1.8e+02 Score=25.25 Aligned_cols=108 Identities=6% Similarity=-0.067 Sum_probs=52.4
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCe----EEEEec-cCceeeeeeec---------ccccEEEEEec--CCCeEEEEeCCC
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTT----CTIWDI-EREAVDTQLIA---------HDKEVYDIAWG--GVGVFASVSADG 106 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~----i~vwd~-~~~~~~~~~~~---------~~~~v~~~~~~--~~~~l~~~~~dg 106 (253)
..|.+|++.|.+.+.++.+..+.. -.||.- ..++.=..+.. ....+..++++ +.+.+..+...+
T Consensus 64 ~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~ 143 (789)
T 1sqj_A 64 MGTESIALDPNNPDRLYLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTE 143 (789)
T ss_dssp CSEEEEEEETTEEEEEEEEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSS
T ss_pred CceeEEEECCCCCCEEEEEeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccC
Confidence 469999999555565655543211 233332 22321111110 00124456666 455666666444
Q ss_pred cEEEEEcCCCCCeeeeeccC---CCCCCeeEEEeeCCCCCEEEEEEeC
Q 035558 107 SVRVFDLRDKEHSTIIYESS---EPDTPLVRLGWNKQDPRYMATIIMD 151 (253)
Q Consensus 107 ~i~i~d~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~~~ 151 (253)
.|. .....++....+.... .....+..+.++|.++..++++..+
T Consensus 144 gl~-~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 144 GIW-KSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CEE-EESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred CEE-EECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 332 1222333333332211 1123678899998666677776655
No 372
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=39.45 E-value=2.1e+02 Score=25.58 Aligned_cols=32 Identities=13% Similarity=0.121 Sum_probs=27.1
Q ss_pred ceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558 176 SVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 176 ~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
.+.+++..++. .++++-+.|+++|+|++.+++
T Consensus 237 ~~~~~~~~~~~-~~lftl~~D~~LRiWsl~t~~ 268 (950)
T 4gq2_M 237 TIISMIFLSTY-NVLVMLSLDYKLKVLDLSTNQ 268 (950)
T ss_dssp CEEEEEEETTT-TEEEEEETTCEEEEEETTTTE
T ss_pred eEEEEeecCCC-cEEEEEECCCEEEEEECCCCC
Confidence 46677777776 599999999999999999875
No 373
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=36.68 E-value=95 Score=25.27 Aligned_cols=74 Identities=12% Similarity=-0.006 Sum_probs=41.0
Q ss_pred eeEEEEecC----CC-CeEEEecCCCcEEEEeccCCCCC---CCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcE
Q 035558 177 VNAIAWAPH----SS-CHICTAGDDSQALIWDLSSMGQP---VEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKL 248 (253)
Q Consensus 177 i~~~~~~~~----~~-~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i 248 (253)
.++|+...- +. ..++.|..+|.|.=.-+...... .....+.........+|..+.++++..+|++++.++-+
T Consensus 406 lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~ 485 (495)
T 1q47_A 406 FTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVA 485 (495)
T ss_dssp EEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEE
T ss_pred eEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEE
Confidence 455555432 31 25678888998854433322110 00000011222346799999999998888888877755
Q ss_pred EE
Q 035558 249 QI 250 (253)
Q Consensus 249 ~v 250 (253)
+|
T Consensus 486 ~v 487 (495)
T 1q47_A 486 QL 487 (495)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 374
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=35.98 E-value=1.3e+02 Score=24.46 Aligned_cols=57 Identities=11% Similarity=0.091 Sum_probs=34.6
Q ss_pred EEEEEEeCCCeEEEEECCCCC------CCeeeecc--cccceeEEEEecCCCCeEEEecCCCcEEE
Q 035558 144 YMATIIMDSAKVVVLDIRFPT------LPVVELQR--HQASVNAIAWAPHSSCHICTAGDDSQALI 201 (253)
Q Consensus 144 ~l~~~~~~~~~i~~~d~~~~~------~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~i 201 (253)
.+..|+.+|...++.-..... ..+.++.- ...+|..|.++++. .+|+.++.++.++|
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~-~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQ-QQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTT-TEEEEEBSSCEEEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCC-CEEEEEECCeEEEE
Confidence 455677777744554433221 12223332 35789999999998 58999988776654
No 375
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=35.64 E-value=1.3e+02 Score=22.10 Aligned_cols=157 Identities=11% Similarity=0.021 Sum_probs=90.9
Q ss_pred CCeeEEEecCC-CCCEEEEEeCCCeEEEEeccCce------eeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcC
Q 035558 43 GPLTSFDWNEA-EPRRIGTSSIDTTCTIWDIEREA------VDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLR 114 (253)
Q Consensus 43 ~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~ 114 (253)
..|..+... . +...++..+.+|.++-..+..-. ....++. .+.+..+... ..+.++..+..|.+..+...
T Consensus 68 e~i~~v~~~-~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~ 145 (276)
T 3no0_A 68 EKIVGAFIR-EKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVR 145 (276)
T ss_dssp CCEEEEEEG-GGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGG
T ss_pred CEEEEEECC-cCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhh
Confidence 456666432 2 46789999999999998875432 2222332 3455555555 56678888899998888764
Q ss_pred CCC-------CeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC------CCeeeecccccceeEEE
Q 035558 115 DKE-------HSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT------LPVVELQRHQASVNAIA 181 (253)
Q Consensus 115 ~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~------~~~~~~~~~~~~i~~~~ 181 (253)
.-. -...+ .. .....|..+...+ ++..++..+..|. ++...+.... .-+..+ ...+.+..+.
T Consensus 146 eip~~gR~a~Gv~~i-~L-~~~d~vv~~~~~~-~~~~ll~~T~~G~-~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~ 220 (276)
T 3no0_A 146 EVPPSTPGARGVQGI-KL-EKNDETSGLRIWN-GEPYLLVITAKGR-VKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLI 220 (276)
T ss_dssp GSCBCCTTCCCEECC-CC-CTTCCEEEEEEES-SCSEEEEEETTSC-EEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEE
T ss_pred hCCCcCCCCCCEEEE-cc-CCCCEEEEEEEeC-CCCEEEEEeCCCc-EEEeEHHHcccCCCCCcceEEE-cCCCcEEEEE
Confidence 321 11111 11 1223566665555 5667888888887 8887764322 112223 2234444443
Q ss_pred EecCCCCeEEEecCCCcEEE--EeccCC
Q 035558 182 WAPHSSCHICTAGDDSQALI--WDLSSM 207 (253)
Q Consensus 182 ~~~~~~~~l~~~~~dg~i~i--wd~~~~ 207 (253)
..... ..++..+.+|.+.. ++...-
T Consensus 221 ~~~~~-~~i~~~t~~G~~ir~~~~~~~i 247 (276)
T 3no0_A 221 PIKEE-VELLITTKNGKAFYDKINQKDI 247 (276)
T ss_dssp EESSE-EEEEEEETTSCEEEEEEEGGGS
T ss_pred EeCCC-CEEEEEcCCCeEEEeeeCHHHC
Confidence 33333 36667777888887 877653
No 376
>1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10
Probab=30.69 E-value=30 Score=23.77 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=26.4
Q ss_pred ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558 174 QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG 208 (253)
Q Consensus 174 ~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 208 (253)
...+.++.|.+.+.+.+++...+|++.+||..-++
T Consensus 118 ~~hllsl~f~~g~aHaia~S~~g~~~tlFDPN~GE 152 (188)
T 1ukf_A 118 RKHLLSLRFANVQGHAIACSCEGSQFKLFDPNLGE 152 (188)
T ss_dssp CEEEEEEEETTTEEEEEEEEEETTEEEEEETTTEE
T ss_pred CceEEEEEecCCCceeEEeccCCCeEEEeCCCCce
Confidence 45566777776655567777789999999998765
No 377
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=30.46 E-value=1.9e+02 Score=22.53 Aligned_cols=141 Identities=9% Similarity=0.061 Sum_probs=73.8
Q ss_pred cEEEEEcCCC--CCeeeeecc---CCCCCCeeEEEee---CC---CCCEEEEEEeCCCeEEEEECCCCCCCeeee-----
Q 035558 107 SVRVFDLRDK--EHSTIIYES---SEPDTPLVRLGWN---KQ---DPRYMATIIMDSAKVVVLDIRFPTLPVVEL----- 170 (253)
Q Consensus 107 ~i~i~d~~~~--~~~~~~~~~---~~~~~~i~~~~~~---~~---~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~----- 170 (253)
+|.+||+.+. +..+.+... ....+.+..+++. |. ++.++..+...+..|.++|+.+++. .+.+
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~s-wRv~~~~~~ 202 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDS-WNVTHPTFK 202 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEE-EEEECGGGS
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcE-EEEccCCCc
Confidence 5888999998 655444321 1223467888887 21 1445555554444499999987642 1111
Q ss_pred ---------ccc----ccceeEEEEecC----CCCeEEEecCCCcEEEEeccCC--CCCCCCCCCCeeeccCC---Ccee
Q 035558 171 ---------QRH----QASVNAIAWAPH----SSCHICTAGDDSQALIWDLSSM--GQPVEGGLDPILAYTAG---AEIE 228 (253)
Q Consensus 171 ---------~~~----~~~i~~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~---~~v~ 228 (253)
.+. ...+..|+++|+ + +.|.-....+ -++|.+.+. .... ........+.. ..-.
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~-~~LYf~plss-~~ly~V~T~~L~~~~--~~~~v~~~G~kg~~s~~~ 278 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGN-RPAYYLAGSA-IKVYSVNTKELKQKG--GKLNPELLGNRGKYNDAI 278 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSC-CEEEEEESSC-SEEEEEEHHHHSSTT--CCCCCEEEEECCTTCCEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCC-eEEEEEECCC-CcEEEEEHHHhhCcc--hhhceEEeeecCCCCCcc
Confidence 111 236888999987 5 4555444333 234444321 1100 01111222222 3344
Q ss_pred EEEEc-CCCCceEEEEcCCcEEEEE
Q 035558 229 QLQWS-SSQPDWVAIAFSTKLQILR 252 (253)
Q Consensus 229 ~~~~~-~~~~~~~~~~~~~~i~vw~ 252 (253)
.++.. .+|..+++--..+.|..|+
T Consensus 279 ~~~~D~~~G~ly~~~~~~~aI~~w~ 303 (381)
T 3q6k_A 279 ALAYDPKTKVIFFAEANTKQVSCWN 303 (381)
T ss_dssp EEEECTTTCEEEEEESSSSEEEEEE
T ss_pred eEEEeCCCCeEEEEeccCCeEEEEe
Confidence 56665 5665555656667777775
No 378
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=28.34 E-value=1.9e+02 Score=21.85 Aligned_cols=202 Identities=7% Similarity=0.005 Sum_probs=104.9
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEe---ccCc------eeee---eeecccccEEEE-Eec---CCCeEEEEeCCC
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWD---IERE------AVDT---QLIAHDKEVYDI-AWG---GVGVFASVSADG 106 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd---~~~~------~~~~---~~~~~~~~v~~~-~~~---~~~~l~~~~~dg 106 (253)
+.+..+... .+...|+.-+..|.++-.. +... ..+. .+. ....|.++ ... +...++..+.+|
T Consensus 42 D~~~~~~~~-~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G 119 (327)
T 3uc1_A 42 DIVAHFFVC-STHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNG 119 (327)
T ss_dssp GCEEEEEEE-ETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTS
T ss_pred CEEEEEEEe-CCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCC
Confidence 345554444 4556666667788776544 3222 2211 122 23445544 333 367999999999
Q ss_pred cEEEEEcCCCCCee---e-eeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC--CC---CCC---e--eeecc
Q 035558 107 SVRVFDLRDKEHST---I-IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR--FP---TLP---V--VELQR 172 (253)
Q Consensus 107 ~i~i~d~~~~~~~~---~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~--~~---~~~---~--~~~~~ 172 (253)
.++--.+..-.... . ...... ...+..+.... ....++..+..|. +..+... .- ... + ..+.
T Consensus 120 ~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~-~~rf~~~~~eip~~gr~a~Gv~~i~L~- 195 (327)
T 3uc1_A 120 LVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQ-SIRFSATDEALRPMGRATSGVQGMRFN- 195 (327)
T ss_dssp EEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSE-EEEEECCTTTSCCCCTTSBCEESSCCC-
T ss_pred EEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCe-EEEEECcccccCcCCcCCCCeeeecCC-
Confidence 99998775422111 1 111122 33555555555 5567777788887 7666655 21 110 1 1122
Q ss_pred cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCC--CeeeccCCCceeEEEEcCCCCceEEEEcCCcEEE
Q 035558 173 HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLD--PILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQI 250 (253)
Q Consensus 173 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~v 250 (253)
....|.++...+.+ ..++..+..|.++.-.+............ ...+..-...+..+........++..+.++.+.-
T Consensus 196 ~~d~Vv~~~~~~~~-~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir 274 (327)
T 3uc1_A 196 IDDRLLSLNVVREG-TYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIR 274 (327)
T ss_dssp TTCCEEEEEECCTT-CEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEE
T ss_pred CCCEEEEEEEECCC-CEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEE
Confidence 23456666555555 48888999999998887654322100000 0111111334544444333445666666665544
Q ss_pred E
Q 035558 251 L 251 (253)
Q Consensus 251 w 251 (253)
+
T Consensus 275 ~ 275 (327)
T 3uc1_A 275 T 275 (327)
T ss_dssp E
T ss_pred E
Confidence 3
No 379
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=26.81 E-value=1.1e+02 Score=25.91 Aligned_cols=58 Identities=14% Similarity=-0.009 Sum_probs=35.4
Q ss_pred eEEEecCCCcEEEE-eccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC--CceEEEEcCCcEEE
Q 035558 189 HICTAGDDSQALIW-DLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ--PDWVAIAFSTKLQI 250 (253)
Q Consensus 189 ~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~i~v 250 (253)
.++.|..+|.|.=. ......... +.........+|..+.+++.. .++++++..+-++|
T Consensus 417 V~flGT~~G~l~Kvv~~~~~~~~~----ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 417 VMFVSTDRGALHKAISLEHAVHII----EETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEETTSEEEEEEECSSSEEEE----EEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCceEE----EEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 67788889987543 333221111 112233456789999999887 77777776665544
No 380
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=25.07 E-value=3.3e+02 Score=23.46 Aligned_cols=158 Identities=10% Similarity=-0.045 Sum_probs=78.3
Q ss_pred CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---eeee-ee----c----ccccEEEEEec--CCCeEEEEeCC---
Q 035558 43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---VDTQ-LI----A----HDKEVYDIAWG--GVGVFASVSAD--- 105 (253)
Q Consensus 43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~-~~----~----~~~~v~~~~~~--~~~~l~~~~~d--- 105 (253)
+.|.+|.++|.+.+.++.+...|-|...+= .++ .+.. +. + ....+.+++++ +.+.++.+..+
T Consensus 21 g~i~~i~~~p~~~~~~y~~~~~ggv~~S~D-gG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~~~ 99 (763)
T 3a0f_A 21 GFISGLVAHPTEKDLIYARTDIGGTYRWNA-AKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDYVQ 99 (763)
T ss_dssp SCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSCTT
T ss_pred CceeEEEeCCCCCCEEEEEeccCcEEEECC-CCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccccc
Confidence 679999999777777888876666544332 222 1111 10 0 12458889887 44554443321
Q ss_pred --CcEEEEEc-CCCCCeeeeeccCCC----CCC--eeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc----
Q 035558 106 --GSVRVFDL-RDKEHSTIIYESSEP----DTP--LVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR---- 172 (253)
Q Consensus 106 --g~i~i~d~-~~~~~~~~~~~~~~~----~~~--i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~---- 172 (253)
....||.- ..++....+...... .+. ...++++|.+...+.++...+. |. -.....+.-..+..
T Consensus 100 ~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~-l~--~S~DgG~TW~~~~~~~~~ 176 (763)
T 3a0f_A 100 WDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQG-LW--RSTDRAQTWSRMNQLPDS 176 (763)
T ss_dssp TCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSC-EE--EESSTTSSCEECTTSCCC
T ss_pred CCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCc-EE--EECCCCcCccccccCccc
Confidence 11334433 334433333221110 111 2468888866666666655444 33 22222211111111
Q ss_pred --cccceeEEEEecCCCCeEEEecCCCcEEEEecc
Q 035558 173 --HQASVNAIAWAPHSSCHICTAGDDSQALIWDLS 205 (253)
Q Consensus 173 --~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 205 (253)
....+..++++|..+..++.+..++. .+|-..
T Consensus 177 ~~~~~~~~~i~~~p~~~~~~~~~~~~~g-~v~~S~ 210 (763)
T 3a0f_A 177 STYGIGIISVIFDPKNVGTAYVASHAVG-GLWVTW 210 (763)
T ss_dssp SCTTTCEEEEEECSSSTTCEEEEESSTT-CEEEES
T ss_pred CCCccceEEEEECCCCCCEEEEEEeCCC-eEEEEC
Confidence 11347788999875455666655543 344333
No 381
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=24.79 E-value=2.2e+02 Score=23.82 Aligned_cols=59 Identities=8% Similarity=0.093 Sum_probs=34.8
Q ss_pred CEEEEEEeCCCeEEEEECCCCC--CC--eeeec--ccccceeEEEEecCCCCeEEEecCCCcEEEE
Q 035558 143 RYMATIIMDSAKVVVLDIRFPT--LP--VVELQ--RHQASVNAIAWAPHSSCHICTAGDDSQALIW 202 (253)
Q Consensus 143 ~~l~~~~~~~~~i~~~d~~~~~--~~--~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iw 202 (253)
..+..|+.+|...++....... .. +..+. ....+|..|.++++. ..|+.++.++.++|-
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~-~~LyV~s~~~V~qVP 445 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAER-RKLYVSSQWEVSQVP 445 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTT-TEEEEECSSEEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCC-CEEEEEecceEEEcc
Confidence 3455667777744454443221 01 12222 245688999999987 588888877665553
No 382
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=24.00 E-value=1.1e+02 Score=26.16 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=36.3
Q ss_pred eEEEecCCCcEE-EEeccCCCCCC--CCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEE
Q 035558 189 HICTAGDDSQAL-IWDLSSMGQPV--EGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQI 250 (253)
Q Consensus 189 ~l~~~~~dg~i~-iwd~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~v 250 (253)
.++.|..+|.|. +.......... ....+.........+|..+.++++...|++++.++-++|
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 567888899885 33222221100 000001223456788999999999988888887776554
No 383
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=22.23 E-value=1.6e+02 Score=24.67 Aligned_cols=62 Identities=8% Similarity=-0.005 Sum_probs=35.5
Q ss_pred eEEEecCCCcEEEEeccCCC-CCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEE
Q 035558 189 HICTAGDDSQALIWDLSSMG-QPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQI 250 (253)
Q Consensus 189 ~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~v 250 (253)
.++.|..+|.|.-.-+.... .................+|..+.++++...+++++.++-++|
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 66788889988644333211 100000000122235678999999998887777776655544
No 384
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=22.14 E-value=2.5e+02 Score=23.14 Aligned_cols=71 Identities=13% Similarity=0.084 Sum_probs=40.8
Q ss_pred eeEEEEec-CCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCce-eEEEEcCCCCceEEEEcCCcEEE
Q 035558 177 VNAIAWAP-HSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEI-EQLQWSSSQPDWVAIAFSTKLQI 250 (253)
Q Consensus 177 i~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~i~v 250 (253)
.++|+... ++...++.|..+|.|.-.-+....... ..+.... ....+| ..+.+++....+++++..+-++|
T Consensus 389 lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~--~~ee~~v-~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 389 LTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGH--PYSTQSI-QQGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSC--CSEEEES-STTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred eEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCee--EEeeecc-CCCCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence 45555443 232366778899998755443221111 0111122 456678 48999998887888777766554
No 385
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=21.95 E-value=3.3e+02 Score=22.42 Aligned_cols=65 Identities=11% Similarity=0.182 Sum_probs=38.3
Q ss_pred cEEEEEec---CCCeEEEEeCCCcEEEEEcCCCCCe-eeee--ccCCCCCCee-EEEeeCCCCCEEEEEEeCC
Q 035558 87 EVYDIAWG---GVGVFASVSADGSVRVFDLRDKEHS-TIIY--ESSEPDTPLV-RLGWNKQDPRYMATIIMDS 152 (253)
Q Consensus 87 ~v~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~--~~~~~~~~i~-~~~~~~~~~~~l~~~~~~~ 152 (253)
..++|+.. +-..+..|..+|.|.-..+...... ..+. .......+|. .|.+++ +...|++++..+
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~-~~~~Lyv~s~~~ 472 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSI-NQLYLYVMSERQ 472 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECT-TSSEEEEECSSE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEcc-CCCeEEEEeccc
Confidence 35555555 3446778889998876655433221 1111 1112234774 899998 778888876654
No 386
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=21.79 E-value=2.7e+02 Score=23.72 Aligned_cols=57 Identities=12% Similarity=0.100 Sum_probs=34.0
Q ss_pred EEEEEEeCCCeEEEEECCCCCC------Ceeee--cccccceeEEEEecCCCCeEEEecCCCcEEE
Q 035558 144 YMATIIMDSAKVVVLDIRFPTL------PVVEL--QRHQASVNAIAWAPHSSCHICTAGDDSQALI 201 (253)
Q Consensus 144 ~l~~~~~~~~~i~~~d~~~~~~------~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i 201 (253)
.+..|+.+|...++.-...... .+.++ .....+|..|.++++. ..|+.++.++.++|
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~-~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQ-QQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTT-TEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCC-CEEEEEECCEEEEE
Confidence 4556677777445554332210 11111 2345689999999998 58999888776654
Done!