Query         035560
Match_columns 398
No_of_seqs    185 out of 1673
Neff          11.3
Searched_HMMs 46136
Date          Fri Mar 29 04:03:12 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035560.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035560hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG0156 Cytochrome P450 CYP2 s 100.0 3.5E-66 7.5E-71  466.1  39.2  357   31-398    25-457 (489)
  2 PLN03234 cytochrome P450 83B1; 100.0 2.4E-61 5.2E-66  449.4  39.9  360   29-398    25-463 (499)
  3 KOG0158 Cytochrome P450 CYP3/C 100.0 1.8E-61 3.9E-66  429.0  35.5  376   12-398    15-465 (499)
  4 PLN02971 tryptophan N-hydroxyl 100.0   4E-60 8.6E-65  443.1  40.1  365   25-398    50-501 (543)
  5 PLN02966 cytochrome P450 83A1  100.0 1.9E-60   4E-65  442.7  36.9  361   29-398    26-464 (502)
  6 PLN02687 flavonoid 3'-monooxyg 100.0 1.7E-59 3.8E-64  437.4  40.5  368   21-398    23-473 (517)
  7 PLN02183 ferulate 5-hydroxylas 100.0 1.1E-59 2.4E-64  438.7  38.5  354   30-398    34-476 (516)
  8 PLN03112 cytochrome P450 famil 100.0 2.2E-59 4.7E-64  437.5  39.6  385    5-398     5-472 (514)
  9 PLN02394 trans-cinnamate 4-mon 100.0 2.2E-59 4.8E-64  436.7  37.8  363   29-398    27-467 (503)
 10 PLN00110 flavonoid 3',5'-hydro 100.0 5.9E-59 1.3E-63  431.3  38.4  381    8-398     7-464 (504)
 11 PLN00168 Cytochrome P450; Prov 100.0 4.4E-58 9.5E-63  428.2  40.9  359   29-398    32-484 (519)
 12 PTZ00404 cytochrome P450; Prov 100.0 1.2E-58 2.6E-63  429.4  36.8  354   31-398    28-451 (482)
 13 PLN02500 cytochrome P450 90B1  100.0 4.2E-58 9.1E-63  426.0  37.1  350   28-398    34-461 (490)
 14 KOG0159 Cytochrome P450 CYP11/ 100.0 3.6E-58 7.8E-63  398.9  33.1  364   29-398    47-487 (519)
 15 KOG0157 Cytochrome P450 CYP4/C 100.0   8E-59 1.7E-63  426.9  30.4  353   30-398    33-465 (497)
 16 PLN02774 brassinosteroid-6-oxi 100.0 1.6E-57 3.5E-62  418.8  34.0  345   32-398    31-435 (463)
 17 PF00067 p450:  Cytochrome P450 100.0 8.6E-58 1.9E-62  424.6  29.9  355   34-398     1-434 (463)
 18 PLN02290 cytokinin trans-hydro 100.0 5.2E-57 1.1E-61  421.7  34.1  334   47-398    86-484 (516)
 19 PLN02196 abscisic acid 8'-hydr 100.0 1.9E-56   4E-61  411.4  35.9  343   29-398    32-433 (463)
 20 PLN02738 carotene beta-ring hy 100.0   2E-56 4.4E-61  419.5  34.5  348   41-398   151-563 (633)
 21 PLN02655 ent-kaurene oxidase   100.0 6.9E-56 1.5E-60  408.3  36.5  348   41-398    19-432 (466)
 22 PLN03018 homomethionine N-hydr 100.0 4.3E-55 9.2E-60  406.2  40.4  386    4-398    11-491 (534)
 23 PLN03141 3-epi-6-deoxocathaste 100.0 3.5E-55 7.5E-60  402.5  34.8  347   28-398     3-422 (452)
 24 PLN02302 ent-kaurenoic acid ox 100.0 7.7E-55 1.7E-59  405.9  37.6  348   27-398    37-458 (490)
 25 PLN03195 fatty acid omega-hydr 100.0 3.2E-54 6.9E-59  402.6  33.7  342   47-398    54-485 (516)
 26 PLN02169 fatty acid (omega-1)- 100.0 1.7E-53 3.8E-58  394.0  35.0  342   45-398    57-469 (500)
 27 PLN02987 Cytochrome P450, fami 100.0 5.3E-53 1.2E-57  387.2  36.6  345   29-398    27-440 (472)
 28 PLN02936 epsilon-ring hydroxyl 100.0 8.7E-53 1.9E-57  389.4  33.9  344   41-398    36-451 (489)
 29 KOG0684 Cytochrome P450 [Secon 100.0 1.6E-52 3.4E-57  355.0  29.2  342   41-398    51-453 (486)
 30 PLN02426 cytochrome P450, fami 100.0 5.1E-51 1.1E-55  377.0  35.7  353   32-398    49-467 (502)
 31 PLN02648 allene oxide synthase 100.0 6.1E-47 1.3E-51  344.7  27.1  349   28-398    13-455 (480)
 32 COG2124 CypX Cytochrome P450 [ 100.0 7.5E-46 1.6E-50  333.7  29.0  320   43-398    24-381 (411)
 33 PF12554 MOZART1:  Mitotic-spin  81.3     5.4 0.00012   23.5   4.4   43  251-293     5-47  (48)
 34 PF12508 DUF3714:  Protein of u  78.8     1.7 3.6E-05   34.9   2.3   50  303-353    55-104 (200)
 35 PF08492 SRP72:  SRP72 RNA-bind  77.3    0.93   2E-05   28.1   0.4   12  345-356    41-52  (59)
 36 PF12273 RCR:  Chitin synthesis  75.2     1.8 3.9E-05   32.2   1.6   17    4-20      4-20  (130)
 37 PF05393 Hum_adeno_E3A:  Human   74.6     3.8 8.2E-05   27.3   2.7   28    1-28     35-62  (94)
 38 PF15300 INT_SG_DDX_CT_C:  INTS  73.5     4.5 9.8E-05   25.7   2.7   12  303-314    43-54  (65)
 39 PF05952 ComX:  Bacillus compet  58.8      10 0.00022   23.3   2.2   27  274-300     4-30  (57)
 40 PF01102 Glycophorin_A:  Glycop  56.2     6.9 0.00015   28.6   1.3   15   19-33     85-99  (122)
 41 PHA03049 IMV membrane protein;  50.4      31 0.00068   21.8   3.3   13    5-17      5-17  (68)
 42 TIGR03779 Bac_Flav_CT_M Bacter  49.2      14  0.0003   33.5   2.4   50  303-353   258-307 (410)
 43 PRK06789 flagellar motor switc  45.8      30 0.00065   22.7   2.9   43  305-347    20-65  (74)
 44 KOG3506 40S ribosomal protein   45.5     9.8 0.00021   22.9   0.6   11  367-377    12-22  (56)
 45 PF05568 ASFV_J13L:  African sw  43.7      14  0.0003   27.4   1.3   23    3-25     33-55  (189)
 46 PF13893 RRM_5:  RNA recognitio  40.0      83  0.0018   18.8   4.7   35   47-81      1-39  (56)
 47 PF15050 SCIMP:  SCIMP protein   38.8      57  0.0012   23.5   3.6   10   30-39     66-75  (133)
 48 PF09926 DUF2158:  Uncharacteri  38.6      36 0.00078   20.7   2.3   17   54-70      3-19  (53)
 49 COG2101 SPT15 TATA-box binding  37.9     8.7 0.00019   29.7  -0.5   36  345-380    35-70  (185)
 50 PF05961 Chordopox_A13L:  Chord  34.7      71  0.0015   20.4   3.2   17    1-17      1-17  (68)
 51 PF13625 Helicase_C_3:  Helicas  34.4      97  0.0021   22.9   4.7   40   42-83     75-114 (129)
 52 PF11808 DUF3329:  Domain of un  34.3      87  0.0019   21.5   4.0   22   32-53     62-83  (90)
 53 PF15062 ARL6IP6:  Haemopoietic  33.6      87  0.0019   21.0   3.6   31    9-39     30-60  (85)
 54 PF12669 P12:  Virus attachment  30.9      28 0.00062   21.6   1.1   17    6-22      5-21  (58)
 55 PF08285 DPM3:  Dolichol-phosph  29.6      86  0.0019   21.6   3.3   29  270-298    54-82  (91)
 56 PF14483 Cut8_M:  Cut8 dimerisa  29.2      96  0.0021   17.3   2.8   21  271-291    14-35  (38)
 57 cd04518 TBP_archaea archaeal T  28.3      14 0.00031   29.1  -0.7   35  345-379    29-63  (174)
 58 PF14824 Sirohm_synth_M:  Siroh  27.6      86  0.0019   16.4   2.3   15  282-296    15-29  (30)
 59 PHA02902 putative IMV membrane  27.5 1.7E+02  0.0036   18.5   5.6   12   10-21     13-24  (70)
 60 KOG3653 Transforming growth fa  27.4 4.6E+02  0.0099   24.7   8.2   38   41-78    209-248 (534)
 61 PRK05933 type III secretion sy  26.9      83  0.0018   27.5   3.4   45  303-347   317-365 (372)
 62 COG4471 Uncharacterized protei  26.7 2.1E+02  0.0046   19.5   4.7   36   47-82     18-53  (90)
 63 KOG0114 Predicted RNA-binding   26.1 2.5E+02  0.0054   20.0   5.2   38   44-81     32-75  (124)
 64 COG3197 FixS Uncharacterized p  25.2      50  0.0011   20.3   1.3    8    1-8       1-8   (58)
 65 PF15183 MRAP:  Melanocortin-2   25.2   2E+02  0.0044   19.3   4.2   12   28-39     70-81  (90)
 66 PRK00394 transcription factor;  25.1      38 0.00082   26.9   1.1   35  345-379    28-62  (179)
 67 PF13993 YccJ:  YccJ-like prote  24.3   1E+02  0.0023   19.1   2.6   31  262-292     8-39  (69)
 68 PF05727 UPF0228:  Uncharacteri  23.8      58  0.0013   23.8   1.7   51  334-384    48-106 (127)
 69 TIGR00847 ccoS cytochrome oxid  23.3      86  0.0019   18.9   2.1    8    1-8       1-8   (51)
 70 PRK02302 hypothetical protein;  23.1 2.6E+02  0.0056   19.2   4.6   33   49-81     21-53  (89)
 71 cd00652 TBP_TLF TATA box bindi  22.5      57  0.0012   25.8   1.7   35  345-379    29-63  (174)
 72 PF14129 DUF4296:  Domain of un  21.7 2.7E+02  0.0058   18.9   6.4   51  248-298    29-79  (87)
 73 PLN00062 TATA-box-binding prot  21.6      22 0.00048   28.2  -0.8   35  345-379    29-63  (179)

No 1  
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=3.5e-66  Score=466.14  Aligned_cols=357  Identities=40%  Similarity=0.636  Sum_probs=307.3

Q ss_pred             CCCCCCCCCC----------cc-hHHHHHHHHHhhCCeEEEecCCccEEEecCHHHHHHHHHhcccccCCCCCc-chhhH
Q 035560           31 HNWQPVPVRY----------QK-LAFYLWKISKQYGPVFSLRLGFRPAIIISSAKLAKEAFKTHDLQFAGRPVL-LGSQI   98 (398)
Q Consensus        31 ~~~ppgp~~~----------~~-~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~~~~~~~i~~~~~~~~~~~~~~-~~~~~   98 (398)
                      .++||||+++          .. ++..+.++.++|||+|.+|+|..++|||+|++.++|++++++..|++||.. .....
T Consensus        25 ~~lPPGP~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d~~fa~Rp~~~~~~~~  104 (489)
T KOG0156|consen   25 RNLPPGPPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQDLEFADRPDPTATLKY  104 (489)
T ss_pred             CCCCcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCCccccCCCCchhhHHH
Confidence            7899999988          44 899999999999999999999999999999999999999999999999972 12111


Q ss_pred             ------------------HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchHHHHHHHHH
Q 035560           99 ------------------DMRKRFVTSLLNSNRIEQFRRVRKDKIFRMVEKISKLGDAADEDASSKAPINVSEIAMTCVR  160 (398)
Q Consensus        99 ------------------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vdl~~~~~~~~~  160 (398)
                                        .+||..+..+++...++++...-.++++.+++.+.+ ..       .+.+||+.+.+..++.
T Consensus       105 ~~~~~~~i~~a~yG~~Wr~~Rr~~~~~L~~~~~~~~~~~~R~~E~~~l~~~l~~-~~-------~~~~vdl~~~l~~~~~  176 (489)
T KOG0156|consen  105 LSYGGKGIVFAPYGDYWREMRRFALTELRSFGRGKSFMEIREEEVDELVKKLSK-SK-------KGEPVDLSELLDLLVG  176 (489)
T ss_pred             hcCCCCceEeCCCcHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHHh-cC-------CCceeeHHHHHHHHHH
Confidence                              899999999999999999877779999999999987 22       2389999999999999


Q ss_pred             HHHHHHHhcccccccchhHHhHHHHHHHHHhhhhccccccccccc-chhhhccchhhHHHHHHH-----------HHHhh
Q 035560          161 NIIFRVTFRKRFEVDGTAAVNRMDFLLAETQLLSGTIFFSDCSYS-FIGNCLDGLTGMHRCLQK-----------HFKDY  228 (398)
Q Consensus       161 ~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~l~~~~~~~~~~~~~~~~-----------~~~~~  228 (398)
                      +++++++||.+++..+.+...++.+.+.......+.+...++ +| ++. +.....+..+.++.           .++++
T Consensus       177 nvI~~~~fG~rf~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~-~p~~l~-~~~~~~g~~~~~~~~~~~~~~~~~~~i~eh  254 (489)
T KOG0156|consen  177 NVICRMLFGRRFEEEDEEEFLELKELVEESLELLGSFNLSDY-FPFLLR-WLDGISGLEKRLKKVSKRLDEFLERIIDEH  254 (489)
T ss_pred             HHHHHHHhCCccccCCchHHHHHHHHHHHHHHHhCCccHHHH-hhHHHH-hcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999986434436688999999999888888888 88 565 44433233332222           22222


Q ss_pred             h-----CCCCChHHHHHhhhhcC---CCCHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcChhHHHHHHHHHHHHhccc
Q 035560          229 A-----GQQGDLIDDLLSLTKAG---YLTLDAVKAAIMEIFIGTTDTSKVTIAMAMTLLMKNPEAMKKAQEEVRSVVKDK  300 (398)
Q Consensus       229 ~-----~~~~~~~~~ll~~~~~~---~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~  300 (398)
                      +     ++..|++|.++...+++   .+++++|...+.++++||+|||++++.|++.+|++||++|+|+|+||++++|.+
T Consensus       255 ~~~~~~~~~~D~vD~lL~~~~~~~~~~~t~~~i~~~~~dl~~AGtdTta~Tl~Wa~a~Ll~~Pev~~K~qeEId~vvG~~  334 (489)
T KOG0156|consen  255 REKIGDEEGRDFVDALLKLMKEEKAEGLTDDHLKALILDLFLAGTDTTATTLEWAMAELLNNPEVQKKLQEEIDEVVGKG  334 (489)
T ss_pred             HhhhccCCCCcHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCC
Confidence            1     12279999999987653   289999999999999999999999999999999999999999999999999876


Q ss_pred             hh-----------HHHHHHHhhcCCCCCC-CCccccceeeeecceEeCCCceEeeC--------------CcccCCcccC
Q 035560          301 GV-----------LNAVIKETMRIQPATQ-FIPKATIESCVIDGYHTPAKTMVLVN--------------DKFIPERFVG  354 (398)
Q Consensus       301 ~~-----------l~a~i~E~lRl~p~~~-~~~r~~~~d~~l~g~~ip~g~~v~~~--------------~~f~PeRf~~  354 (398)
                      ..           |+|+|+|++|++|++| .++|.+.+|+.++||.|||||.|.++              ++|+||||++
T Consensus       335 r~v~e~D~~~lpYL~Avi~E~~Rl~p~~Pl~~ph~~~~d~~i~Gy~IPkgT~v~vn~~ai~rDp~vw~dP~eF~PERFl~  414 (489)
T KOG0156|consen  335 RLVSESDLPKLPYLKAVIKETLRLHPPLPLLLPRETTEDTKIGGYDIPKGTTVLVNLWAIHRDPKVWEDPEEFKPERFLD  414 (489)
T ss_pred             CCCChhhhccCHHHHHHHHHHHhcCCCccccccccccCCeeEcCEEcCCCCEEEEeehhhhcCCccCCCccccChhhhcC
Confidence            52           9999999999999999 88999999999999999999999998              8999999999


Q ss_pred             CCCCCCCCCccccccCCCCCCCcchhhhHHHHHHHHHHHhhhcC
Q 035560          355 SNIDMGGQNFEFIPFGSGRRICPGIHMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       355 ~~~~~~~~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~fd  398 (398)
                      ++ +.+.....++|||.|+|+|||..+|.+++.++++.++++||
T Consensus       415 ~~-d~~~~~~~~iPFG~GRR~CpG~~La~~~l~l~la~llq~F~  457 (489)
T KOG0156|consen  415 SN-DGKGLDFKLIPFGSGRRICPGEGLARAELFLFLANLLQRFD  457 (489)
T ss_pred             Cc-cccCCceEecCCCCCcCCCCcHHHHHHHHHHHHHHHHheee
Confidence            85 33336789999999999999999999999999999999996


No 2  
>PLN03234 cytochrome P450 83B1; Provisional
Probab=100.00  E-value=2.4e-61  Score=449.38  Aligned_cols=360  Identities=41%  Similarity=0.715  Sum_probs=281.2

Q ss_pred             CCCCCCCCCCCC-----------cchHHHHHHHHHhhCCeEEEecCCccEEEecCHHHHHHHHHhcccccCCCCCcchh-
Q 035560           29 SPHNWQPVPVRY-----------QKLAFYLWKISKQYGPVFSLRLGFRPAIIISSAKLAKEAFKTHDLQFAGRPVLLGS-   96 (398)
Q Consensus        29 ~~~~~ppgp~~~-----------~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~~~~~~~i~~~~~~~~~~~~~~~~~-   96 (398)
                      ++.+.||||+++           .++..++.+++++||++|++++|+.++++++||+++++++.++...|.+++..... 
T Consensus        25 ~~~~~pPgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~~~~~~lg~~~~vvv~dpe~~~~il~~~~~~f~~r~~~~~~~  104 (499)
T PLN03234         25 KSLRLPPGPKGLPIIGNLHQMEKFNPQHFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQDLNFTARPLLKGQQ  104 (499)
T ss_pred             CCCCCCcCCCCCCeeccHHhcCCCCccHHHHHHHHHcCCeEEEEecCcCEEEECCHHHHHHHHHhCCccccCCCCchhhh
Confidence            445678888765           25678999999999999999999999999999999999998776666655432110 


Q ss_pred             -----------------hHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchHHHHHHHH
Q 035560           97 -----------------QIDMRKRFVTSLLNSNRIEQFRRVRKDKIFRMVEKISKLGDAADEDASSKAPINVSEIAMTCV  159 (398)
Q Consensus        97 -----------------~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vdl~~~~~~~~  159 (398)
                                       ..++|+.++.+.|+++.++.+.+.+.+.++++++.+....+       +++++|+.+++..++
T Consensus       105 ~~~~~~~~~~~~~~~~~w~~~Rr~l~~~~f~~~~l~~~~~~i~~~~~~ll~~l~~~~~-------~~~~vd~~~~~~~~t  177 (499)
T PLN03234        105 TMSYQGRELGFGQYTAYYREMRKMCMVNLFSPNRVASFRPVREEECQRMMDKIYKAAD-------QSGTVDLSELLLSFT  177 (499)
T ss_pred             hhccCCCccccCCCcHHHHHHHHHHHHHhcCHHHHHHhHHHHHHHHHHHHHHHHHhcc-------CCCeEEHHHHHHHHH
Confidence                             11667765679999999999999999999999999976544       567899999999999


Q ss_pred             HHHHHHHHhcccccccchhHHhHHHHHHHHHhhhhcccccccccccchhhhc-----------cchhhHHHHHHHHHHhh
Q 035560          160 RNIIFRVTFRKRFEVDGTAAVNRMDFLLAETQLLSGTIFFSDCSYSFIGNCL-----------DGLTGMHRCLQKHFKDY  228 (398)
Q Consensus       160 ~~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~-----------~~~~~~~~~~~~~~~~~  228 (398)
                      +++++.++||.+++..+.+. .++.+................. +|++. +.           .......+.+.+.+++.
T Consensus       178 ~dvi~~~~fG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~p~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~  254 (499)
T PLN03234        178 NCVVCRQAFGKRYNEYGTEM-KRFIDILYETQALLGTLFFSDL-FPYFG-FLDNLTGLSARLKKAFKELDTYLQELLDET  254 (499)
T ss_pred             HHHHHHHHhCCcccccchhH-HHHHHHHHHHHHHcCCCcHHHH-hhHHH-HhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999887543333 4555554444333222222223 44433 11           11112222222233222


Q ss_pred             h------CCCCChHHHHHhhhhcC----CCCHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcChhHHHHHHHHHHHHhc
Q 035560          229 A------GQQGDLIDDLLSLTKAG----YLTLDAVKAAIMEIFIGTTDTSKVTIAMAMTLLMKNPEAMKKAQEEVRSVVK  298 (398)
Q Consensus       229 ~------~~~~~~~~~ll~~~~~~----~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~  298 (398)
                      +      .+..|+++.+++..+++    .++++++.+++.++++||+|||+++++|++++|++||++|+++++||+++.+
T Consensus       255 ~~~~~~~~~~~d~l~~l~~~~~~~~~~~~~~~~~i~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~v~~kl~~Ei~~~~~  334 (499)
T PLN03234        255 LDPNRPKQETESFIDLLMQIYKDQPFSIKFTHENVKAMILDIVVPGTDTAAAVVVWAMTYLIKYPEAMKKAQDEVRNVIG  334 (499)
T ss_pred             HhhcccCCCcccHHHHHHHHhhccCcCCCCCHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhC
Confidence            1      23468999988765432    4899999999999999999999999999999999999999999999999886


Q ss_pred             cch-----------hHHHHHHHhhcCCCCCCC-CccccceeeeecceEeCCCceEeeC---------------CcccCCc
Q 035560          299 DKG-----------VLNAVIKETMRIQPATQF-IPKATIESCVIDGYHTPAKTMVLVN---------------DKFIPER  351 (398)
Q Consensus       299 ~~~-----------~l~a~i~E~lRl~p~~~~-~~r~~~~d~~l~g~~ip~g~~v~~~---------------~~f~PeR  351 (398)
                      +..           .++|||+|+||++|++|. ++|.+.+|++++||.||+||.|.++               ++|||||
T Consensus       335 ~~~~~~~~~l~~l~yl~avi~E~lRl~p~~~~~~~R~~~~d~~~~g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR  414 (499)
T PLN03234        335 DKGYVSEEDIPNLPYLKAVIKESLRLEPVIPILLHRETIADAKIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPER  414 (499)
T ss_pred             CCCCCCHHHHhcChHHHHHHHHHhccCCCccccCCcccCCCeeECCEEECCCCEEEEehHhhhCCcccccCChhhcCchh
Confidence            532           199999999999999995 5799999999999999999999998               8999999


Q ss_pred             ccCCCCC--CCCCCccccccCCCCCCCcchhhhHHHHHHHHHHHhhhcC
Q 035560          352 FVGSNID--MGGQNFEFIPFGSGRRICPGIHMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       352 f~~~~~~--~~~~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~fd  398 (398)
                      |+++...  ....+..++|||.|+|+|+|+++|++|+++++|.++++||
T Consensus       415 ~l~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~  463 (499)
T PLN03234        415 FMKEHKGVDFKGQDFELLPFGSGRRMCPAMHLGIAMVEIPFANLLYKFD  463 (499)
T ss_pred             hcCCCCCcCcCCCcceEeCCCCCCCCCCChHHHHHHHHHHHHHHHHhee
Confidence            9976422  2234678999999999999999999999999999999996


No 3  
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=1.8e-61  Score=429.04  Aligned_cols=376  Identities=23%  Similarity=0.365  Sum_probs=288.3

Q ss_pred             HHHHHHhhcccccCCCCCCCCCCCCCCC-C-------cchHHHHHHHHHhhCCeEEEecCCccEEEecCHHHHHHHHHhc
Q 035560           12 LPIFLLYKCQISTWPSSSPHNWQPVPVR-Y-------QKLAFYLWKISKQYGPVFSLRLGFRPAIIISSAKLAKEAFKTH   83 (398)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~ppgp~~-~-------~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~~~~~~~i~~~~   83 (398)
                      +++++++.+.+.+|+++.-+..+|-|+. .       +.+.....+...++|++++++.+.++.++|+|||.+++|+.++
T Consensus        15 ~l~y~~~~~~~~yw~rrGi~~~~p~p~~Gn~~~~~~~~~~~~~~~~~~~~~~~~~G~y~~~~p~l~v~D~elik~I~ik~   94 (499)
T KOG0158|consen   15 VLLYLWLRWTYSYWRRRGIPGPKPLPFLGNLPGMLKRERPGDLLLDIYTKYRPVVGIYEGRQPALLVSDPELIKEILIKD   94 (499)
T ss_pred             HHHHHHHHhhhhhhccCCCCCCCCCCcEecHHHHHhccCcHHHHHHHHhcCCCEEEEEecCCcceEecCHHHHHHHHHHh
Confidence            3556666666667766543333333221 1       2223333344444499999999999999999999999999988


Q ss_pred             ccccCC--CCCcchhh-----H-----------HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccC
Q 035560           84 DLQFAG--RPVLLGSQ-----I-----------DMRKRFVTSLLNSNRIEQFRRVRKDKIFRMVEKISKLGDAADEDASS  145 (398)
Q Consensus        84 ~~~~~~--~~~~~~~~-----~-----------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  145 (398)
                      ...|..  ++......     .           ++|.. ++|.|++.+++++.+.+++.++++++.+.+...       .
T Consensus        95 F~~F~~r~~~~~~d~~~~l~~~~Lf~~~g~~WK~lR~~-lsP~Fts~kmk~m~~t~~~~~~~l~~~l~~~~~-------~  166 (499)
T KOG0158|consen   95 FDNFYNRKRPIYGDPEDPLSALNLFFLRGERWKRLRTK-LSPTFTSGKLKKMFPTMEEVGDELVRHLRRKSE-------G  166 (499)
T ss_pred             CccCcCCCCCCcCCCCCcccccCchhccCchHHHHHHh-hccccchhhHHHHHHHHHHHHHHHHHHHHHhhc-------c
Confidence            888887  32222211     0           56666 899999999999999999999999999998643       3


Q ss_pred             CCCcchHHHHHHHHHHHHHHHHhcccccccchhHHhHHHHHHHHHhhh-hcccc----cccccccchhhhc---cchhhH
Q 035560          146 KAPINVSEIAMTCVRNIIFRVTFRKRFEVDGTAAVNRMDFLLAETQLL-SGTIF----FSDCSYSFIGNCL---DGLTGM  217 (398)
Q Consensus       146 ~~~vdl~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~p~l~~~~---~~~~~~  217 (398)
                      +..+++.+.+.+++.|+|++++||.+.+...+.. .++...-...... .....    .... +|.+...+   ......
T Consensus       167 ~~~~~~~dl~~~yT~DVI~~~AfG~~~~s~~d~~-~~F~~~~~~~~~~~~~~~~l~~~~~~~-~p~l~~~l~~~~~~~~~  244 (499)
T KOG0158|consen  167 GQEGEIKDLCARYTTDVIGSCAFGLDANSLRDPK-AEFRRMGRRAFFLSRGLFPLKFMLIFL-FPKLALPLRVKLFPEDV  244 (499)
T ss_pred             cCCccHHHHHHHHHHHHHhHhhcccchhhhcCch-HHHHHhhHHHHHHhhccchHhHhHHHH-hHHHHHhhhcccChHHH
Confidence            3578999999999999999999999998776555 5555533333332 11111    1111 34333221   111222


Q ss_pred             HHHHHHHHHh----h-h--CCCCChHHHHHhhhhc-------C-CCCHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcC
Q 035560          218 HRCLQKHFKD----Y-A--GQQGDLIDDLLSLTKA-------G-YLTLDAVKAAIMEIFIGTTDTSKVTIAMAMTLLMKN  282 (398)
Q Consensus       218 ~~~~~~~~~~----~-~--~~~~~~~~~ll~~~~~-------~-~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~  282 (398)
                      .+.+.+.+..    + +  ..+.|+++.++++..+       . .+|.+||+++++.+++||.||||+++++++|+||+|
T Consensus       245 ~~~~~~~v~~~v~~R~~~~~~r~Dfi~lll~~~~~~~~~~~~~~~lt~dei~aQafvFl~AGfeTts~tlsf~lYeLA~~  324 (499)
T KOG0158|consen  245 TDFFRKLVNSRVEQREKENIERNDFIDLLLDARASDFAKSKSHKALTDDEIAAQAFVFLLAGFETTASTLSFALYELAKN  324 (499)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHhhcccccccccccccCHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhcC
Confidence            2333333222    2 1  4688999999998853       1 499999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhccch-h----------HHHHHHHhhcCCCCCCCCccccceeeeec-ceEeCCCceEeeC------
Q 035560          283 PEAMKKAQEEVRSVVKDKG-V----------LNAVIKETMRIQPATQFIPKATIESCVID-GYHTPAKTMVLVN------  344 (398)
Q Consensus       283 p~~~~~l~~Ei~~~~~~~~-~----------l~a~i~E~lRl~p~~~~~~r~~~~d~~l~-g~~ip~g~~v~~~------  344 (398)
                      |++|+|||+||+++..+.. .          |++||+||||+||++|.+.|.+++|++++ ++.||||+.|.++      
T Consensus       325 PdvQ~kLreEI~~~~~~~~~ltyd~l~~L~YLd~Vi~ETLR~yP~~~~~~R~C~k~~~i~~~~~i~kG~~V~Ip~~alH~  404 (499)
T KOG0158|consen  325 PDVQDKLREEIDEVLEEKEGLTYDSLSKLKYLDMVIKETLRLYPPAPFLNRECTKDYEIPGGFVIPKGTPVMIPTYALHH  404 (499)
T ss_pred             hHHHHHHHHHHHHHhcccCCCCHHHHhCCcHHHHHHHHHHhhCCCcccccceecCceecCCCeEeCCCCEEEeecccccC
Confidence            9999999999999965544 2          99999999999999998889999999999 9999999999998      


Q ss_pred             --------CcccCCcccCCCCCCCCCCccccccCCCCCCCcchhhhHHHHHHHHHHHhhhcC
Q 035560          345 --------DKFIPERFVGSNIDMGGQNFEFIPFGSGRRICPGIHMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       345 --------~~f~PeRf~~~~~~~~~~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~fd  398 (398)
                              ++|+||||.+++.+ ..++..|+|||.|||+|+|++||.+|+|+.+++||++|+
T Consensus       405 Dp~~~p~Pe~F~PERF~~~~~~-~~~~~~ylPFG~GPR~CIGmRfa~mq~K~~L~~lL~~f~  465 (499)
T KOG0158|consen  405 DPEYWPEPEKFKPERFEEENNK-SRHPGAYLPFGVGPRNCIGMRFALMEAKLALAHLLRNFS  465 (499)
T ss_pred             CcccCCCcccCCCccCCCCccc-ccCCccccCCCCCccccHHHHHHHHHHHHHHHHHHhhCE
Confidence                    89999999988644 457899999999999999999999999999999999995


No 4  
>PLN02971 tryptophan N-hydroxylase
Probab=100.00  E-value=4e-60  Score=443.06  Aligned_cols=365  Identities=23%  Similarity=0.385  Sum_probs=275.4

Q ss_pred             CCCCCCCCCCCCCCCC----------c-c-hHHHHHHHHHhhC-CeEEEecCCccEEEecCHHHHHHHHHhcccccCCCC
Q 035560           25 WPSSSPHNWQPVPVRY----------Q-K-LAFYLWKISKQYG-PVFSLRLGFRPAIIISSAKLAKEAFKTHDLQFAGRP   91 (398)
Q Consensus        25 ~~~~~~~~~ppgp~~~----------~-~-~~~~~~~~~~kyG-~v~~~~~~~~~~vvv~~~~~~~~i~~~~~~~~~~~~   91 (398)
                      .+.+++.+.||||+++          . . .+.++.++.++|| +++++++|+.++|+|+||+.+++++.+++..|.+++
T Consensus        50 ~~~~r~~~lPPGP~~lPiiGnl~~l~~~~~~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~~~~f~~rp  129 (543)
T PLN02971         50 SRNKKLHPLPPGPTGFPIVGMIPAMLKNRPVFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQDALFASRP  129 (543)
T ss_pred             cccCCCCCCCcCCCCCCcccchHHhccCCcHhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhcchhhcCCC
Confidence            3334566789999876          1 1 2567889999999 799999999999999999999999998777777665


Q ss_pred             Ccchh------------------hHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchHH
Q 035560           92 VLLGS------------------QIDMRKRFVTSLLNSNRIEQFRRVRKDKIFRMVEKISKLGDAADEDASSKAPINVSE  153 (398)
Q Consensus        92 ~~~~~------------------~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vdl~~  153 (398)
                      .....                  ..++|+.+....+++...+.+.+.++++++.+++.+.....       +++++|+.+
T Consensus       130 ~~~~~~~l~~~~~~~l~~~~G~~Wk~~Rk~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------~~~~vd~~~  202 (543)
T PLN02971        130 LTYAQKILSNGYKTCVITPFGEQFKKMRKVIMTEIVCPARHRWLHDNRAEETDHLTAWLYNMVK-------NSEPVDLRF  202 (543)
T ss_pred             cccchhhccCCCCceEecCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CCCceehHH
Confidence            32110                  00778885566777777778888888888999888865433       456899999


Q ss_pred             HHHHHHHHHHHHHHhcccccccc-----hhHHhHHHHHHHHHhhhhc---ccccccccccchhhhc--c---chhh----
Q 035560          154 IAMTCVRNIIFRVTFRKRFEVDG-----TAAVNRMDFLLAETQLLSG---TIFFSDCSYSFIGNCL--D---GLTG----  216 (398)
Q Consensus       154 ~~~~~~~~~~~~~~fG~~~~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~l~~~~--~---~~~~----  216 (398)
                      .+..++++++++++||.++...+     ++. .+....+........   .....++ +|+++.+.  .   ....    
T Consensus       203 ~~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~p~l~~~~~~~~~~~~~~~~~~  280 (543)
T PLN02971        203 VTRHYCGNAIKRLMFGTRTFSEKTEPDGGPT-LEDIEHMDAMFEGLGFTFAFCISDY-LPMLTGLDLNGHEKIMRESSAI  280 (543)
T ss_pred             HHHHHHHHHHHHHHhCCcccccccccccchh-HHHHHHHHHHHHHHHhccCCcHHHh-CCchhhhcccchHHHHHHHHHH
Confidence            99999999999999999874211     111 122222222222111   1122344 66554210  0   0111    


Q ss_pred             HHHHHHHHHHhh----h-C---CCCChHHHHHhhhhcC---CCCHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcChhH
Q 035560          217 MHRCLQKHFKDY----A-G---QQGDLIDDLLSLTKAG---YLTLDAVKAAIMEIFIGTTDTSKVTIAMAMTLLMKNPEA  285 (398)
Q Consensus       217 ~~~~~~~~~~~~----~-~---~~~~~~~~ll~~~~~~---~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~  285 (398)
                      ..+.+.+.++++    + +   ...|+++.+++..+++   .++++++.+++.++++||+|||+++++|++++|++||++
T Consensus       281 ~~~~~~~~i~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~ls~~~i~~~~~~l~~AG~dTTa~tl~~~l~~La~~Pev  360 (543)
T PLN02971        281 MDKYHDPIIDERIKMWREGKRTQIEDFLDIFISIKDEAGQPLLTADEIKPTIKELVMAAPDNPSNAVEWAMAEMINKPEI  360 (543)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCcCHHHHHHhhhcccCCCCCCHHHHHHhHHHHheeccchHHHHHHHHHHHHHhCHHH
Confidence            111222222221    1 1   2469999999865432   389999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccchh-----------HHHHHHHhhcCCCCCC-CCccccceeeeecceEeCCCceEeeC---------
Q 035560          286 MKKAQEEVRSVVKDKGV-----------LNAVIKETMRIQPATQ-FIPKATIESCVIDGYHTPAKTMVLVN---------  344 (398)
Q Consensus       286 ~~~l~~Ei~~~~~~~~~-----------l~a~i~E~lRl~p~~~-~~~r~~~~d~~l~g~~ip~g~~v~~~---------  344 (398)
                      |+|+++||+++++.+..           ++|||+|+||++|++| .++|.+.+|++++||.||||+.|.++         
T Consensus       361 q~kl~~EI~~v~g~~~~~t~~d~~~LpYl~avi~E~lRl~p~~~~~~~r~~~~d~~~~G~~IpkGt~v~~~~~~~~~d~~  440 (543)
T PLN02971        361 LHKAMEEIDRVVGKERFVQESDIPKLNYVKAIIREAFRLHPVAAFNLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRNPK  440 (543)
T ss_pred             HHHHHHHHHHHhCCCCCCCHHHhccCHHHHHHHHHHHhcCCCcccCcceecCCCeeECCEEECCCCEEEECcHHhcCChh
Confidence            99999999999875321           8999999999999999 58899999999999999999999998         


Q ss_pred             -----CcccCCcccCCCCC--CCCCCccccccCCCCCCCcchhhhHHHHHHHHHHHhhhcC
Q 035560          345 -----DKFIPERFVGSNID--MGGQNFEFIPFGSGRRICPGIHMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       345 -----~~f~PeRf~~~~~~--~~~~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~fd  398 (398)
                           ++|+||||++++.+  ....+..|+|||.|+|.|+|++||++|+++++++++++|+
T Consensus       441 ~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~  501 (543)
T PLN02971        441 VWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTAITTMMLARLLQGFK  501 (543)
T ss_pred             hCCCccccCcccCCCCCccccccCCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCE
Confidence                 89999999975422  1234568999999999999999999999999999999996


No 5  
>PLN02966 cytochrome P450 83A1
Probab=100.00  E-value=1.9e-60  Score=442.71  Aligned_cols=361  Identities=37%  Similarity=0.630  Sum_probs=278.2

Q ss_pred             CCCCCCCCCCCC-----------cchHHHHHHHHHhhCCeEEEecCCccEEEecCHHHHHHHHHhcccccCCCCCcc---
Q 035560           29 SPHNWQPVPVRY-----------QKLAFYLWKISKQYGPVFSLRLGFRPAIIISSAKLAKEAFKTHDLQFAGRPVLL---   94 (398)
Q Consensus        29 ~~~~~ppgp~~~-----------~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~~~~~~~i~~~~~~~~~~~~~~~---   94 (398)
                      +..+.||||+++           .+++.++.+++++||++|++++++.++++++||+.+++++.+++..|.+++...   
T Consensus        26 ~~~~~ppgp~~~p~~G~l~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~~i~~vl~~~~~~~~~~~~~~~~~  105 (502)
T PLN02966         26 KRYKLPPGPSPLPVIGNLLQLQKLNPQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELLKTQDVNFADRPPHRGHE  105 (502)
T ss_pred             CCCCCCcCCCCCCeeccHHhcCCCChhHHHHHHHHHhCCeEEEecCCCcEEEECCHHHHHHHHHhCcccccCCCCCccce
Confidence            334678888764           357889999999999999999999999999999999999987665554332110   


Q ss_pred             ---------------hhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchHHHHHHHH
Q 035560           95 ---------------GSQIDMRKRFVTSLLNSNRIEQFRRVRKDKIFRMVEKISKLGDAADEDASSKAPINVSEIAMTCV  159 (398)
Q Consensus        95 ---------------~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vdl~~~~~~~~  159 (398)
                                     .....+|+.++++.|++..++.+.+.+.+.++++++.+.+...       +++++|+.+++..++
T Consensus       106 ~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~-------~~~~vdl~~~~~~~t  178 (502)
T PLN02966        106 FISYGRRDMALNHYTPYYREIRKMGMNHLFSPTRVATFKHVREEEARRMMDKINKAAD-------KSEVVDISELMLTFT  178 (502)
T ss_pred             eeccCcceeeeCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CCCceeHHHHHHHHH
Confidence                           0011567776889999999999999999999999999976543       567899999999999


Q ss_pred             HHHHHHHHhcccccccchhHHhHHHHHHHHHhhhhcccccccccccchhhh--cc----c----hhhHHHHHHHHHHhh-
Q 035560          160 RNIIFRVTFRKRFEVDGTAAVNRMDFLLAETQLLSGTIFFSDCSYSFIGNC--LD----G----LTGMHRCLQKHFKDY-  228 (398)
Q Consensus       160 ~~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~--~~----~----~~~~~~~~~~~~~~~-  228 (398)
                      +++++.++||.+++..+.+. .++.+.+..............+ +|++..+  +.    .    .....+.+.+.+++. 
T Consensus       179 ~dvi~~~~fG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  256 (502)
T PLN02966        179 NSVVCRQAFGKKYNEDGEEM-KRFIKILYGTQSVLGKIFFSDF-FPYCGFLDDLSGLTAYMKECFERQDTYIQEVVNETL  256 (502)
T ss_pred             HHHHHHHHhCCccCccchHH-HHHHHHHHHHHHHhCcccHHHh-hchhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999887543333 4555544443333222222222 4432200  00    0    011112222222221 


Q ss_pred             ---h--CCCCChHHHHHhhhhcC----CCCHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcChhHHHHHHHHHHHHhcc
Q 035560          229 ---A--GQQGDLIDDLLSLTKAG----YLTLDAVKAAIMEIFIGTTDTSKVTIAMAMTLLMKNPEAMKKAQEEVRSVVKD  299 (398)
Q Consensus       229 ---~--~~~~~~~~~ll~~~~~~----~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~  299 (398)
                         +  .+..++++.+++..+++    .++++++.+++.++++||+|||+++++|++++|++||++|+|+++||+++.+.
T Consensus       257 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~  336 (502)
T PLN02966        257 DPKRVKPETESMIDLLMEIYKEQPFASEFTVDNVKAVILDIVVAGTDTAAAAVVWGMTYLMKYPQVLKKAQAEVREYMKE  336 (502)
T ss_pred             hccccccccccHHHHHHHHHhccCcCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence               1  23468999999765432    58999999999999999999999999999999999999999999999999753


Q ss_pred             c---h----------hHHHHHHHhhcCCCCCC-CCccccceeeeecceEeCCCceEeeC---------------CcccCC
Q 035560          300 K---G----------VLNAVIKETMRIQPATQ-FIPKATIESCVIDGYHTPAKTMVLVN---------------DKFIPE  350 (398)
Q Consensus       300 ~---~----------~l~a~i~E~lRl~p~~~-~~~r~~~~d~~l~g~~ip~g~~v~~~---------------~~f~Pe  350 (398)
                      .   .          .++||++|+||++|++| .++|.+.+|++++||.||+||.|.++               ++|+||
T Consensus       337 ~~~~~~~~~dl~~lpyl~avi~E~LRl~p~v~~~~~R~~~~d~~l~g~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~F~Pe  416 (502)
T PLN02966        337 KGSTFVTEDDVKNLPYFRALVKETLRIEPVIPLLIPRACIQDTKIAGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPE  416 (502)
T ss_pred             cCCCcCCHhhccCCcHHHHHHHHHhccCCCcccccCcccCCCeeEccEEECCCCEEEEecccccCCcccccCChhhCChh
Confidence            1   1          19999999999999999 46899999999999999999999998               789999


Q ss_pred             cccCCCCCCCCCCccccccCCCCCCCcchhhhHHHHHHHHHHHhhhcC
Q 035560          351 RFVGSNIDMGGQNFEFIPFGSGRRICPGIHMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       351 Rf~~~~~~~~~~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~fd  398 (398)
                      ||++++.+....+..|+|||.|+|+|+|++||++|+++++|.++++||
T Consensus       417 Rwl~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~el~~~la~ll~~f~  464 (502)
T PLN02966        417 RFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLGAAMLEVPYANLLLNFN  464 (502)
T ss_pred             hhcCCCCCcCCCcCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHhce
Confidence            999764332234678999999999999999999999999999999996


No 6  
>PLN02687 flavonoid 3'-monooxygenase
Probab=100.00  E-value=1.7e-59  Score=437.38  Aligned_cols=368  Identities=30%  Similarity=0.545  Sum_probs=283.8

Q ss_pred             ccccCCCCCCCCCCCCCCCC----------cchHHHHHHHHHhhCCeEEEecCCccEEEecCHHHHHHHHHhcccccCCC
Q 035560           21 QISTWPSSSPHNWQPVPVRY----------QKLAFYLWKISKQYGPVFSLRLGFRPAIIISSAKLAKEAFKTHDLQFAGR   90 (398)
Q Consensus        21 ~~~~~~~~~~~~~ppgp~~~----------~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~~~~~~~i~~~~~~~~~~~   90 (398)
                      +.....+.++.+.||||.++          .+++..+.++.++||++|++++|+.++++++||+++++++.++...|.++
T Consensus        23 ~~~~~~~~~~~~~pPgp~~~P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~p~~~~~il~~~~~~f~~r  102 (517)
T PLN02687         23 LRRGGSGKHKRPLPPGPRGWPVLGNLPQLGPKPHHTMAALAKTYGPLFRLRFGFVDVVVAASASVAAQFLRTHDANFSNR  102 (517)
T ss_pred             hccccCCCCCCCCCccCCCCCccccHHhcCCchhHHHHHHHHHhCCeeEEecCCceEEEeCCHHHHHHHHHhcchhhhcC
Confidence            33333344555788998765          44778899999999999999999999999999999999998776667765


Q ss_pred             CCcch------------------hhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchH
Q 035560           91 PVLLG------------------SQIDMRKRFVTSLLNSNRIEQFRRVRKDKIFRMVEKISKLGDAADEDASSKAPINVS  152 (398)
Q Consensus        91 ~~~~~------------------~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vdl~  152 (398)
                      +....                  ...++|+.+..+.|+.+.++.+.+.+.++++++++.+.+..        +++++|+.
T Consensus       103 ~~~~~~~~~~~~~~~~l~~~~g~~Wk~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~--------~~~~vd~~  174 (517)
T PLN02687        103 PPNSGAEHMAYNYQDLVFAPYGPRWRALRKICAVHLFSAKALDDFRHVREEEVALLVRELARQH--------GTAPVNLG  174 (517)
T ss_pred             CCccchhhhccCCceeEeCCCCHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHhc--------CCCceeHH
Confidence            42210                  00167777434899999999999999999999999997642        45689999


Q ss_pred             HHHHHHHHHHHHHHHhcccccccc-hhHHhHHHHHHHHHhhhhcccccccccccchhhhcc------chhh----HHHHH
Q 035560          153 EIAMTCVRNIIFRVTFRKRFEVDG-TAAVNRMDFLLAETQLLSGTIFFSDCSYSFIGNCLD------GLTG----MHRCL  221 (398)
Q Consensus       153 ~~~~~~~~~~~~~~~fG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~------~~~~----~~~~~  221 (398)
                      +++..+++++++.++||.++...+ .+....+.+.+............... +|++. ++.      ....    ..+.+
T Consensus       175 ~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~P~l~-~l~~~~~~~~~~~~~~~~~~~~  252 (517)
T PLN02687        175 QLVNVCTTNALGRAMVGRRVFAGDGDEKAREFKEMVVELMQLAGVFNVGDF-VPALR-WLDLQGVVGKMKRLHRRFDAMM  252 (517)
T ss_pred             HHHHHHHHHHHHHHHhCccccccCCcchHHHHHHHHHHHHHHhccCcHHHH-hhhHH-HhCcccHHHHHHHHHHHHHHHH
Confidence            999999999999999999875322 11224565655555543332222233 55433 211      0111    11222


Q ss_pred             HHHHHhhh-------CCCCChHHHHHhhhhc-------CCCCHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcChhHHH
Q 035560          222 QKHFKDYA-------GQQGDLIDDLLSLTKA-------GYLTLDAVKAAIMEIFIGTTDTSKVTIAMAMTLLMKNPEAMK  287 (398)
Q Consensus       222 ~~~~~~~~-------~~~~~~~~~ll~~~~~-------~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~  287 (398)
                      .+.+++++       ++..|+++.+++..++       +.++++++.+++.++++||+|||+++++|++++|++||++|+
T Consensus       253 ~~~i~~r~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~eTta~~l~~~l~~L~~~P~~~~  332 (517)
T PLN02687        253 NGIIEEHKAAGQTGSEEHKDLLSTLLALKREQQADGEGGRITDTEIKALLLNLFTAGTDTTSSTVEWAIAELIRHPDILK  332 (517)
T ss_pred             HHHHHHHHHhccccCcccccHHHHHHHhhccccccccccCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHhCHHHHH
Confidence            23333222       1346999999986532       258999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccch-----------hHHHHHHHhhcCCCCCC-CCccccceeeeecceEeCCCceEeeC-----------
Q 035560          288 KAQEEVRSVVKDKG-----------VLNAVIKETMRIQPATQ-FIPKATIESCVIDGYHTPAKTMVLVN-----------  344 (398)
Q Consensus       288 ~l~~Ei~~~~~~~~-----------~l~a~i~E~lRl~p~~~-~~~r~~~~d~~l~g~~ip~g~~v~~~-----------  344 (398)
                      ++++||+++.+...           .++||++|+||++|+++ .++|.+.+|++++||.||+|+.|.++           
T Consensus       333 kl~~Ei~~~~~~~~~~~~~~l~~lpyl~a~i~EtlRl~p~~~~~~~R~~~~d~~~~g~~ip~Gt~v~~~~~~~h~d~~~~  412 (517)
T PLN02687        333 KAQEELDAVVGRDRLVSESDLPQLTYLQAVIKETFRLHPSTPLSLPRMAAEECEINGYHIPKGATLLVNVWAIARDPEQW  412 (517)
T ss_pred             HHHHHHHHHcCCCCCCCHHHhhhCHHHHHHHHHHHccCCCccccccccCCCCeeECCEEECCCCEEEEecHHhcCCcccC
Confidence            99999999876432           18999999999999999 58999999999999999999999998           


Q ss_pred             ---CcccCCcccCCCCC----CCCCCccccccCCCCCCCcchhhhHHHHHHHHHHHhhhcC
Q 035560          345 ---DKFIPERFVGSNID----MGGQNFEFIPFGSGRRICPGIHMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       345 ---~~f~PeRf~~~~~~----~~~~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~fd  398 (398)
                         ++|+||||++++..    ....+..++|||.|+|.|+|++||.+|++++++.++++||
T Consensus       413 ~dp~~F~PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~C~G~~~A~~e~~~~la~ll~~f~  473 (517)
T PLN02687        413 PDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGLSWGLRMVTLLTATLVHAFD  473 (517)
T ss_pred             CCcccCCchhcCCCCCccccccCCCceeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcc
Confidence               89999999975321    1124568999999999999999999999999999999996


No 7  
>PLN02183 ferulate 5-hydroxylase
Probab=100.00  E-value=1.1e-59  Score=438.66  Aligned_cols=354  Identities=32%  Similarity=0.544  Sum_probs=271.4

Q ss_pred             CCCCCCCCCCC----------cchHHHHHHHHHhhCCeEEEecCCccEEEecCHHHHHHHHHhcccccCCCCCcch----
Q 035560           30 PHNWQPVPVRY----------QKLAFYLWKISKQYGPVFSLRLGFRPAIIISSAKLAKEAFKTHDLQFAGRPVLLG----   95 (398)
Q Consensus        30 ~~~~ppgp~~~----------~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~~~~~~~i~~~~~~~~~~~~~~~~----   95 (398)
                      +.+.||||.++          ...+.++.+++++||++|++++++.++|+++||+++++++.+++..|+.++....    
T Consensus        34 ~~~~ppgp~~~Pl~G~l~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~~~~  113 (516)
T PLN02183         34 RLPYPPGPKGLPIIGNMLMMDQLTHRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQDSVFSNRPANIAISYL  113 (516)
T ss_pred             CCCCCcCCCCCCeeccHHhcCCcchHHHHHHHHHhCCeeEEEeCCcceEEeCCHHHHHHHHHhhhhhhcCCCcccchhcc
Confidence            34678898876          2356788999999999999999999999999999999999877666655543110    


Q ss_pred             --------------hhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchHHHHHHHHHH
Q 035560           96 --------------SQIDMRKRFVTSLLNSNRIEQFRRVRKDKIFRMVEKISKLGDAADEDASSKAPINVSEIAMTCVRN  161 (398)
Q Consensus        96 --------------~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vdl~~~~~~~~~~  161 (398)
                                    ...++|+.+++++|+.+.++.+.+.. ++++.+++.+...         .++++|+.+++..++++
T Consensus       114 ~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~~-~~~~~~~~~l~~~---------~~~~v~~~~~~~~~~~~  183 (516)
T PLN02183        114 TYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWASVR-DEVDSMVRSVSSN---------IGKPVNIGELIFTLTRN  183 (516)
T ss_pred             ccCCCceEeCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH-HHHHHHHHHHHhc---------CCCcEeHHHHHHHHHHH
Confidence                          00167777568999999999888864 6789999998642         46789999999999999


Q ss_pred             HHHHHHhcccccccchhHHhHHHHHHHHHhhhhcccccccccccchhhhcc-----ch----hhHHHHHHHHHHhh----
Q 035560          162 IIFRVTFRKRFEVDGTAAVNRMDFLLAETQLLSGTIFFSDCSYSFIGNCLD-----GL----TGMHRCLQKHFKDY----  228 (398)
Q Consensus       162 ~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~-----~~----~~~~~~~~~~~~~~----  228 (398)
                      ++++++||.+.+..   . .++.+.+..+............ +|++.....     ..    ....+.+.+.++++    
T Consensus       184 vi~~~~fG~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  258 (516)
T PLN02183        184 ITYRAAFGSSSNEG---Q-DEFIKILQEFSKLFGAFNVADF-IPWLGWIDPQGLNKRLVKARKSLDGFIDDIIDDHIQKR  258 (516)
T ss_pred             HHHhHhhcCcccch---H-HHHHHHHHHHHHHhCCccHHHh-cchhHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999877542   2 3444544444333322222233 554431101     11    11111122222221    


Q ss_pred             h-C--------CCCChHHHHHhhhhc-------------CCCCHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcChhHH
Q 035560          229 A-G--------QQGDLIDDLLSLTKA-------------GYLTLDAVKAAIMEIFIGTTDTSKVTIAMAMTLLMKNPEAM  286 (398)
Q Consensus       229 ~-~--------~~~~~~~~ll~~~~~-------------~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~  286 (398)
                      + +        ...|+++.++++..+             ..++++++.+.+.++++||+|||+++++|++++|++||++|
T Consensus       259 ~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTTa~tl~~~l~~La~~Pevq  338 (516)
T PLN02183        259 KNQNADNDSEEAETDMVDDLLAFYSEEAKVNESDDLQNSIKLTRDNIKAIIMDVMFGGTETVASAIEWAMAELMKSPEDL  338 (516)
T ss_pred             cccccccccccccccHHHHHHHhhhccccccccccccccCCCCHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHhCHHHH
Confidence            1 1        235899999975422             14899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccch-----------hHHHHHHHhhcCCCCCCCCccccceeeeecceEeCCCceEeeC-----------
Q 035560          287 KKAQEEVRSVVKDKG-----------VLNAVIKETMRIQPATQFIPKATIESCVIDGYHTPAKTMVLVN-----------  344 (398)
Q Consensus       287 ~~l~~Ei~~~~~~~~-----------~l~a~i~E~lRl~p~~~~~~r~~~~d~~l~g~~ip~g~~v~~~-----------  344 (398)
                      +|+++||+++++...           .++||++||||++|++|...|.+.+|++++||.||||+.|.++           
T Consensus       339 ~kl~~Ei~~v~~~~~~~~~~~l~~L~yl~avi~EtlRl~p~~p~~~r~~~~d~~l~g~~IPkGt~V~~~~~~~hrd~~~~  418 (516)
T PLN02183        339 KRVQQELADVVGLNRRVEESDLEKLTYLKCTLKETLRLHPPIPLLLHETAEDAEVAGYFIPKRSRVMINAWAIGRDKNSW  418 (516)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHhccChHHHHHHHHHhccCCCccceeeeccCceeECCEEECCCCEEEEehhhhcCCcccc
Confidence            999999999986321           1999999999999999977799999999999999999999998           


Q ss_pred             ---CcccCCcccCCCCC-CCCCCccccccCCCCCCCcchhhhHHHHHHHHHHHhhhcC
Q 035560          345 ---DKFIPERFVGSNID-MGGQNFEFIPFGSGRRICPGIHMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       345 ---~~f~PeRf~~~~~~-~~~~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~fd  398 (398)
                         ++|+||||++++.+ ...+...|+|||.|+|+|+|++||++|+++++|.++++||
T Consensus       419 ~dP~~F~PeRfl~~~~~~~~~~~~~~lpFG~G~R~CiG~~lA~~e~~l~la~ll~~f~  476 (516)
T PLN02183        419 EDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHCFT  476 (516)
T ss_pred             CCccccCchhhCCCCCccccCCcceecCCCCCCCCCCChHHHHHHHHHHHHHHHheeE
Confidence               89999999976421 1224568999999999999999999999999999999996


No 8  
>PLN03112 cytochrome P450 family protein; Provisional
Probab=100.00  E-value=2.2e-59  Score=437.53  Aligned_cols=385  Identities=30%  Similarity=0.468  Sum_probs=290.4

Q ss_pred             HHHHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCC----------cchHHHHHHHHHhhCCeEEEecCCccEEEecCHH
Q 035560            5 VLAILFCLPIFLLYKCQISTWPSSSPHNWQPVPVRY----------QKLAFYLWKISKQYGPVFSLRLGFRPAIIISSAK   74 (398)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ppgp~~~----------~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~~~   74 (398)
                      ++.+++++++++++.|.+..++++++.+.||||.++          ..++.++.++++|||++|++++++.+.++++||+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ppgp~~~pl~G~~~~~~~~~~~~~~~~~~kyG~v~~~~~g~~~~v~v~dpe   84 (514)
T PLN03112          5 LLSLLFSVLIFNVLIWRWLNASMRKSLRLPPGPPRWPIVGNLLQLGPLPHRDLASLCKKYGPLVYLRLGSVDAITTDDPE   84 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHccccccCCCCCccCCCCCCeeeeHHhcCCchHHHHHHHHHHhCCeEEEEecCccEEEECCHH
Confidence            333444444444334444455666788899999876          4578889999999999999999999999999999


Q ss_pred             HHHHHHHhcccccCCCCCcchh------------------hHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 035560           75 LAKEAFKTHDLQFAGRPVLLGS------------------QIDMRKRFVTSLLNSNRIEQFRRVRKDKIFRMVEKISKLG  136 (398)
Q Consensus        75 ~~~~i~~~~~~~~~~~~~~~~~------------------~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  136 (398)
                      .+++++.++...|++++.....                  ...+|+.+..+.|+.+.++.+.+.+.++++.+++.+.+..
T Consensus        85 ~~~~vl~~~~~~f~~~~~~~~~~~~~~g~~~~~~~~~g~~wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~lv~~l~~~~  164 (514)
T PLN03112         85 LIREILLRQDDVFASRPRTLAAVHLAYGCGDVALAPLGPHWKRMRRICMEHLLTTKRLESFAKHRAEEARHLIQDVWEAA  164 (514)
T ss_pred             HHHHHHHhCCcccccCCCcccceeeccCCCceEeCCCCHHHHHHHHHHHHHhcCHHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence            9999998776666655443100                  0167777567789999999999999999999999876543


Q ss_pred             ccccccccCCCCcchHHHHHHHHHHHHHHHHhcccccccch---hHHhHHHHHHHHHhhhhcccccccccccchhhhc--
Q 035560          137 DAADEDASSKAPINVSEIAMTCVRNIIFRVTFRKRFEVDGT---AAVNRMDFLLAETQLLSGTIFFSDCSYSFIGNCL--  211 (398)
Q Consensus       137 ~~~~~~~~~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~--  211 (398)
                      .       +++++|+.+.+..+++++++.++||.++.....   +...++.+.+............... +|+++ ++  
T Consensus       165 ~-------~~~~vd~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~-~~~~  235 (514)
T PLN03112        165 Q-------TGKPVNLREVLGAFSMNNVTRMLLGKQYFGAESAGPKEAMEFMHITHELFRLLGVIYLGDY-LPAWR-WLDP  235 (514)
T ss_pred             c-------cCCeeeHHHHHHHHHHHHHHHHHcCCccccccccchHHHHHHHHHHHHHHHHcCCCcHHHh-ChHHH-hcCc
Confidence            3       567899999999999999999999998743211   1124555555554433222222233 45443 11  


Q ss_pred             ----cchhhHHHHH----HHHHHhhh---------CCCCChHHHHHhhhhcC---CCCHHHHHHHHHHHhhhcccchHHH
Q 035560          212 ----DGLTGMHRCL----QKHFKDYA---------GQQGDLIDDLLSLTKAG---YLTLDAVKAAIMEIFIGTTDTSKVT  271 (398)
Q Consensus       212 ----~~~~~~~~~~----~~~~~~~~---------~~~~~~~~~ll~~~~~~---~l~~~~i~~~~~~~~~ag~~tt~~~  271 (398)
                          .......+.+    .+.+++.+         ++..|+++.++++.+++   .++++++.+++.++++||+|||+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTTa~~  315 (514)
T PLN03112        236 YGCEKKMREVEKRVDEFHDKIIDEHRRARSGKLPGGKDMDFVDVLLSLPGENGKEHMDDVEIKALMQDMIAAATDTSAVT  315 (514)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCccchHHHHHHHhhccccccCCCHHHHHHHHHHHhccccccHHHH
Confidence                1111112222    22222211         12358999999864332   4899999999999999999999999


Q ss_pred             HHHHHHHHhcChhHHHHHHHHHHHHhccch-----------hHHHHHHHhhcCCCCCC-CCccccceeeeecceEeCCCc
Q 035560          272 IAMAMTLLMKNPEAMKKAQEEVRSVVKDKG-----------VLNAVIKETMRIQPATQ-FIPKATIESCVIDGYHTPAKT  339 (398)
Q Consensus       272 l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~-----------~l~a~i~E~lRl~p~~~-~~~r~~~~d~~l~g~~ip~g~  339 (398)
                      ++|++++|++||++|+++++||+++++...           .++|||+|++|++|++| .++|.+.+|++++||.||||+
T Consensus       316 l~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~t~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~i~g~~IPkGt  395 (514)
T PLN03112        316 NEWAMAEVIKNPRVLRKIQEELDSVVGRNRMVQESDLVHLNYLRCVVRETFRMHPAGPFLIPHESLRATTINGYYIPAKT  395 (514)
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHHhcCCCCcCChhhhccCcHHHHHHHHHhccCCCcccccccccCCCeeEcCEEeCCCC
Confidence            999999999999999999999999987532           19999999999999999 578999999999999999999


Q ss_pred             eEeeC--------------CcccCCcccCCCCC---C-CCCCccccccCCCCCCCcchhhhHHHHHHHHHHHhhhcC
Q 035560          340 MVLVN--------------DKFIPERFVGSNID---M-GGQNFEFIPFGSGRRICPGIHMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       340 ~v~~~--------------~~f~PeRf~~~~~~---~-~~~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~fd  398 (398)
                      .|.++              ++|+||||.+++..   . ......++|||+|+|.|+|++||++|++++++.++++||
T Consensus       396 ~v~~~~~~~h~d~~~~~dP~~F~PeRf~~~~~~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~  472 (514)
T PLN03112        396 RVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKCPGAPLGVTMVLMALARLFHCFD  472 (514)
T ss_pred             EEEEehHHhhCCcccCCChhhcCCcccCCCCCCccccccCCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHhee
Confidence            99998              89999998654211   1 113468999999999999999999999999999999996


No 9  
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=100.00  E-value=2.2e-59  Score=436.67  Aligned_cols=363  Identities=27%  Similarity=0.474  Sum_probs=273.3

Q ss_pred             CCCCCCCCCCCC----------cc-hHHHHHHHHHhhCCeEEEecCCccEEEecCHHHHHHHHHhcccccCCCCCcch--
Q 035560           29 SPHNWQPVPVRY----------QK-LAFYLWKISKQYGPVFSLRLGFRPAIIISSAKLAKEAFKTHDLQFAGRPVLLG--   95 (398)
Q Consensus        29 ~~~~~ppgp~~~----------~~-~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~~~~~~~i~~~~~~~~~~~~~~~~--   95 (398)
                      ++.+.||||+++          .+ .+..+.+++++||++|++++|++++|+++||+.+++++.+++..|.+++....  
T Consensus        27 ~~~~~pPgp~~~p~~g~l~~~~~~~~~~~~~~~~~~yG~v~~i~~g~~~~v~v~dpe~i~~il~~~~~~~~~r~~~~~~~  106 (503)
T PLN02394         27 KKLKLPPGPAAVPIFGNWLQVGDDLNHRNLAEMAKKYGDVFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFD  106 (503)
T ss_pred             CcCCCCcCCCCCCeeeeHHhcCCCchhHHHHHHHHHhCCeEEEEcCCeeEEEeCCHHHHHHHHHhCCccccCCCCcchHh
Confidence            456788899865          22 46789999999999999999999999999999999999866555554331100  


Q ss_pred             -h---------------hHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchHHHHHHHH
Q 035560           96 -S---------------QIDMRKRFVTSLLNSNRIEQFRRVRKDKIFRMVEKISKLGDAADEDASSKAPINVSEIAMTCV  159 (398)
Q Consensus        96 -~---------------~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vdl~~~~~~~~  159 (398)
                       .               ..++|+.+..+.|++..++.+.+.+.++++.+++.+......      .++.+|+.+.+..++
T Consensus       107 ~~~g~~~~~l~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~i~~~v~~lv~~l~~~~~~------~~~~v~~~~~~~~~~  180 (503)
T PLN02394        107 IFTGKGQDMVFTVYGDHWRKMRRIMTVPFFTNKVVQQYRYGWEEEADLVVEDVRANPEA------ATEGVVIRRRLQLMM  180 (503)
T ss_pred             HhccCCCceeecCCCHHHHHHHHHHHHHhcChHHHHHhhHHHHHHHHHHHHHHHHhhhc------cCCcEecHHHHHHHH
Confidence             0               016677744599999999999999999999999998754320      245689999999999


Q ss_pred             HHHHHHHHhcccccccchhHHhHHHHHHHHHhhhhcc--cccccccccchhhhccch----hhHH----HHHHH-HHHhh
Q 035560          160 RNIIFRVTFRKRFEVDGTAAVNRMDFLLAETQLLSGT--IFFSDCSYSFIGNCLDGL----TGMH----RCLQK-HFKDY  228 (398)
Q Consensus       160 ~~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~l~~~~~~~----~~~~----~~~~~-~~~~~  228 (398)
                      ++++++++||.+++..+......+.............  ...... +|++.......    ....    +.+.. .++++
T Consensus       181 ~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  259 (503)
T PLN02394        181 YNIMYRMMFDRRFESEDDPLFLKLKALNGERSRLAQSFEYNYGDF-IPILRPFLRGYLKICQDVKERRLALFKDYFVDER  259 (503)
T ss_pred             HHHHHHHHhCCCcccccchhHHHHHHHHHHHHHHhcccccchhhh-chHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998754322223332332222222111  111222 44333111111    1100    01111 12221


Q ss_pred             h----------CCCCChHHHHHhhhhcCCCCHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcChhHHHHHHHHHHHHhc
Q 035560          229 A----------GQQGDLIDDLLSLTKAGYLTLDAVKAAIMEIFIGTTDTSKVTIAMAMTLLMKNPEAMKKAQEEVRSVVK  298 (398)
Q Consensus       229 ~----------~~~~~~~~~ll~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~  298 (398)
                      +          +...|+++.++++.+++.++++++..++.++++||+|||+++++|++++|++||++|+++++||+++.+
T Consensus       260 ~~~~~~~~~~~~~~~d~l~~ll~~~~~~~l~~~~i~~~~~~~~~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~v~~  339 (503)
T PLN02394        260 KKLMSAKGMDKEGLKCAIDHILEAQKKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRDELDTVLG  339 (503)
T ss_pred             HHHhhhccCCcchhhhHHHHHHhccccCCCCHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhC
Confidence            1          123689999998876667999999999999999999999999999999999999999999999999986


Q ss_pred             cchh-----------HHHHHHHhhcCCCCCC-CCccccceeeeecceEeCCCceEeeC--------------CcccCCcc
Q 035560          299 DKGV-----------LNAVIKETMRIQPATQ-FIPKATIESCVIDGYHTPAKTMVLVN--------------DKFIPERF  352 (398)
Q Consensus       299 ~~~~-----------l~a~i~E~lRl~p~~~-~~~r~~~~d~~l~g~~ip~g~~v~~~--------------~~f~PeRf  352 (398)
                      .+..           ++|||+|+||++|++| ..+|.+.+|++++||.||+||.|.++              ++|+||||
T Consensus       340 ~~~~~~~~~l~~lpyl~avi~EtlRl~p~~~~~~~r~~~~d~~i~g~~IP~Gt~V~~~~~~~~rd~~~~~~P~~F~PeRw  419 (503)
T PLN02394        340 PGNQVTEPDTHKLPYLQAVVKETLRLHMAIPLLVPHMNLEDAKLGGYDIPAESKILVNAWWLANNPELWKNPEEFRPERF  419 (503)
T ss_pred             CCCCCCHhHHhhCHHHHHHHHHHHhcCCCcccccceecCCCcccCCEEeCCCCEEEEchHHHhCCcccCCCccccCcccc
Confidence            4221           9999999999999999 56799999999999999999999998              89999999


Q ss_pred             cCCCCC--CCCCCccccccCCCCCCCcchhhhHHHHHHHHHHHhhhcC
Q 035560          353 VGSNID--MGGQNFEFIPFGSGRRICPGIHMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       353 ~~~~~~--~~~~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~fd  398 (398)
                      ++++.+  .......++|||.|+|+|+|++||++|+++++|.++++||
T Consensus       420 l~~~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~  467 (503)
T PLN02394        420 LEEEAKVEANGNDFRFLPFGVGRRSCPGIILALPILGIVLGRLVQNFE  467 (503)
T ss_pred             CCCCCcccccCCCCceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHce
Confidence            975421  1224568999999999999999999999999999999996


No 10 
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=100.00  E-value=5.9e-59  Score=431.30  Aligned_cols=381  Identities=28%  Similarity=0.496  Sum_probs=287.4

Q ss_pred             HHHHHHHHHHhhcccccCCCCCCCCCCCCCCCC----------cchHHHHHHHHHhhCCeEEEecCCccEEEecCHHHHH
Q 035560            8 ILFCLPIFLLYKCQISTWPSSSPHNWQPVPVRY----------QKLAFYLWKISKQYGPVFSLRLGFRPAIIISSAKLAK   77 (398)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~ppgp~~~----------~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~~~~~~   77 (398)
                      +.++.++.++.+++.+......+.+.||||+++          ..++.++.+++++||++|++++|++++|+++||++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~pPgp~~~Pl~G~l~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~   86 (504)
T PLN00110          7 LAAATLLFFITRFFIRSLLPKPSRKLPPGPRGWPLLGALPLLGNMPHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAAR   86 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccCCCcccCCCCCeeechhhcCCchHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHH
Confidence            334444444444444444444556778888765          4468899999999999999999999999999999999


Q ss_pred             HHHHhcccccCCCCCcchh------------------hHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 035560           78 EAFKTHDLQFAGRPVLLGS------------------QIDMRKRFVTSLLNSNRIEQFRRVRKDKIFRMVEKISKLGDAA  139 (398)
Q Consensus        78 ~i~~~~~~~~~~~~~~~~~------------------~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  139 (398)
                      +++.++...|..++.....                  ..++|+.+..+.|+.+.++.+.+.+.++++.+++.+.+...  
T Consensus        87 ~vl~~~~~~f~~r~~~~~~~~~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~i~~~~~~~~~~l~~~~~--  164 (504)
T PLN00110         87 AFLKTLDINFSNRPPNAGATHLAYGAQDMVFADYGPRWKLLRKLSNLHMLGGKALEDWSQVRTVELGHMLRAMLELSQ--  164 (504)
T ss_pred             HHHHhcchhhcCCCCccchhhhccCCCceeeCCCCHHHHHHHHHHHHHhCCHHHHHHhhHHHHHHHHHHHHHHHHhcc--
Confidence            9998776666655432110                  01777774446899999999999999999999999876443  


Q ss_pred             cccccCCCCcchHHHHHHHHHHHHHHHHhccccc-ccchhHHhHHHHHHHHHhhhhcccccccccccchhhhcc------
Q 035560          140 DEDASSKAPINVSEIAMTCVRNIIFRVTFRKRFE-VDGTAAVNRMDFLLAETQLLSGTIFFSDCSYSFIGNCLD------  212 (398)
Q Consensus       140 ~~~~~~~~~vdl~~~~~~~~~~~~~~~~fG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~------  212 (398)
                           +++++|+.+++..+++++++.++||.++. ..+.+. .++.+.+............... +|++. ++.      
T Consensus       165 -----~g~~~~~~~~~~~~~~~vi~~~~fg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~p~l~-~l~~~~~~~  236 (504)
T PLN00110        165 -----RGEPVVVPEMLTFSMANMIGQVILSRRVFETKGSES-NEFKDMVVELMTTAGYFNIGDF-IPSIA-WMDIQGIER  236 (504)
T ss_pred             -----CCCcEeHHHHHHHHHHHHHHHHHhCCcccccCchhH-HHHHHHHHHHHHHhccccHHHH-cchHh-hhCcchHHH
Confidence                 56789999999999999999999999862 222222 4555555554433322222233 55443 211      


Q ss_pred             chhhHHHHH----HHHHHhhh------CCCCChHHHHHhhhhc---CCCCHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035560          213 GLTGMHRCL----QKHFKDYA------GQQGDLIDDLLSLTKA---GYLTLDAVKAAIMEIFIGTTDTSKVTIAMAMTLL  279 (398)
Q Consensus       213 ~~~~~~~~~----~~~~~~~~------~~~~~~~~~ll~~~~~---~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l  279 (398)
                      ......+.+    .+.+++++      ....|+++.+++..+.   ..++++++.+++.++++||+|||+++++|++++|
T Consensus       237 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~l~~~~i~~~~~~~~~Ag~dTta~~l~~~l~~L  316 (504)
T PLN00110        237 GMKHLHKKFDKLLTRMIEEHTASAHERKGNPDFLDVVMANQENSTGEKLTLTNIKALLLNLFTAGTDTSSSVIEWSLAEM  316 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccCCChhhHHhhcccccCCCCCCHHHHHHHHHhhhcccccchHHHHHHHHHHH
Confidence            111112222    22222221      1246899999976432   2689999999999999999999999999999999


Q ss_pred             hcChhHHHHHHHHHHHHhccch-----------hHHHHHHHhhcCCCCCC-CCccccceeeeecceEeCCCceEeeC---
Q 035560          280 MKNPEAMKKAQEEVRSVVKDKG-----------VLNAVIKETMRIQPATQ-FIPKATIESCVIDGYHTPAKTMVLVN---  344 (398)
Q Consensus       280 ~~~p~~~~~l~~Ei~~~~~~~~-----------~l~a~i~E~lRl~p~~~-~~~r~~~~d~~l~g~~ip~g~~v~~~---  344 (398)
                      ++||++|+|+++||+++.+...           .++||++||||++|+++ .++|.+.+|++++||.||+|+.|.++   
T Consensus       317 ~~~P~~~~kl~~Ei~~~~~~~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~Ip~Gt~V~~~~~~  396 (504)
T PLN00110        317 LKNPSILKRAHEEMDQVIGRNRRLVESDLPKLPYLQAICKESFRKHPSTPLNLPRVSTQACEVNGYYIPKNTRLSVNIWA  396 (504)
T ss_pred             HhCHHHHHHHHHHHHHHhCCCCCCCHHHhhcChHHHHHHHHHhcCCCCcccccccccCCCeeeCCEEECCCCEEEEeHHH
Confidence            9999999999999999986432           18999999999999999 58999999999999999999999998   


Q ss_pred             -----------CcccCCcccCCCCCCC---CCCccccccCCCCCCCcchhhhHHHHHHHHHHHhhhcC
Q 035560          345 -----------DKFIPERFVGSNIDMG---GQNFEFIPFGSGRRICPGIHMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       345 -----------~~f~PeRf~~~~~~~~---~~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~fd  398 (398)
                                 ++|+||||++++....   .+...++|||.|+|.|+|++||++|++++++.++++||
T Consensus       397 ~h~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~  464 (504)
T PLN00110        397 IGRDPDVWENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVEYILGTLVHSFD  464 (504)
T ss_pred             hcCChhhcCCcccCCcccccCCCCcccccCCCeeeEeCCCCCCCCCCcHHHHHHHHHHHHHHHHHhce
Confidence                       8999999997532111   12358999999999999999999999999999999996


No 11 
>PLN00168 Cytochrome P450; Provisional
Probab=100.00  E-value=4.4e-58  Score=428.18  Aligned_cols=359  Identities=23%  Similarity=0.368  Sum_probs=272.5

Q ss_pred             CCCCCCCCCCCC-------------cchHHHHHHHHHhhCCeEEEecCCccEEEecCHHHHHHHHHhcccccCCCCCcch
Q 035560           29 SPHNWQPVPVRY-------------QKLAFYLWKISKQYGPVFSLRLGFRPAIIISSAKLAKEAFKTHDLQFAGRPVLLG   95 (398)
Q Consensus        29 ~~~~~ppgp~~~-------------~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~~~~~~~i~~~~~~~~~~~~~~~~   95 (398)
                      ...++||||+++             ..++.++.+++++||++|++++|+.+.++++||+.+++++.++...|+.++....
T Consensus        32 ~~~~lpPgp~~~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~il~~~~~~f~~rp~~~~  111 (519)
T PLN00168         32 KGRRLPPGPPAVPLLGSLVWLTNSSADVEPLLRRLIARYGPVVSLRVGSRLSVFVADRRLAHAALVERGAALADRPAVAS  111 (519)
T ss_pred             CCCCCCcCCCCCcccccHHhhccccccHHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcCCccccCCcccc
Confidence            344678888765             1256778999999999999999999999999999999999877766665543110


Q ss_pred             ----------h-----h---HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchHHHHHH
Q 035560           96 ----------S-----Q---IDMRKRFVTSLLNSNRIEQFRRVRKDKIFRMVEKISKLGDAADEDASSKAPINVSEIAMT  157 (398)
Q Consensus        96 ----------~-----~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vdl~~~~~~  157 (398)
                                .     .   .++||.+++++|+.+.++++.+.+.+.++.+++.+.+...       .+..+|+.+.+..
T Consensus       112 ~~~~~~~~~~~~~~~~G~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~-------~~~~v~~~~~~~~  184 (519)
T PLN00168        112 SRLLGESDNTITRSSYGPVWRLLRRNLVAETLHPSRVRLFAPARAWVRRVLVDKLRREAE-------DAAAPRVVETFQY  184 (519)
T ss_pred             hhhhccCCCceeCCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCCcCHHHHHHH
Confidence                      0     0   1556666899999999999999999999999999976543       4457899999999


Q ss_pred             HHHHHHHHHHhcccccccchhHHhHHHHHHHHHhhhh-cccccccccccchhhhcc---------chhhHHHHHHHHHHh
Q 035560          158 CVRNIIFRVTFRKRFEVDGTAAVNRMDFLLAETQLLS-GTIFFSDCSYSFIGNCLD---------GLTGMHRCLQKHFKD  227 (398)
Q Consensus       158 ~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~l~~~~~---------~~~~~~~~~~~~~~~  227 (398)
                      ++.++++.++||.+++..  .. ..+........... ........ +|++.....         ......+.+.+.+++
T Consensus       185 ~~~~ii~~~~fG~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~-~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  260 (519)
T PLN00168        185 AMFCLLVLMCFGERLDEP--AV-RAIAAAQRDWLLYVSKKMSVFAF-FPAVTKHLFRGRLQKALALRRRQKELFVPLIDA  260 (519)
T ss_pred             HHHHHHHHHHcCCCcChh--hH-HHHHHHHHHHHHHhcCCCCHHHh-CcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988632  11 23333333221111 11112233 453321110         011112222222222


Q ss_pred             hhC-----------------CCCChHHHHHhhhh--c--CCCCHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcChhHH
Q 035560          228 YAG-----------------QQGDLIDDLLSLTK--A--GYLTLDAVKAAIMEIFIGTTDTSKVTIAMAMTLLMKNPEAM  286 (398)
Q Consensus       228 ~~~-----------------~~~~~~~~ll~~~~--~--~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~  286 (398)
                      ++.                 ...|+++.+++...  +  ..++++++.+++.++++||+|||+++++|++++|++||++|
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~AG~dTTa~~l~~~l~~L~~~P~~q  340 (519)
T PLN00168        261 RREYKNHLGQGGEPPKKETTFEHSYVDTLLDIRLPEDGDRALTDDEIVNLCSEFLNAGTDTTSTALQWIMAELVKNPSIQ  340 (519)
T ss_pred             HHHHhhhccccCccccccccccccHHHHHHhhhccccccCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhCHHHH
Confidence            110                 03589999997642  1  25999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccch------------hHHHHHHHhhcCCCCCC-CCccccceeeeecceEeCCCceEeeC---------
Q 035560          287 KKAQEEVRSVVKDKG------------VLNAVIKETMRIQPATQ-FIPKATIESCVIDGYHTPAKTMVLVN---------  344 (398)
Q Consensus       287 ~~l~~Ei~~~~~~~~------------~l~a~i~E~lRl~p~~~-~~~r~~~~d~~l~g~~ip~g~~v~~~---------  344 (398)
                      +|+++||+++++...            .++||++|+||++|+++ .++|.+.+|++++||.||||+.|.++         
T Consensus       341 ~kl~~Ei~~v~~~~~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~IpkGt~v~~~~~~~~~d~~  420 (519)
T PLN00168        341 SKLHDEIKAKTGDDQEEVSEEDVHKMPYLKAVVLEGLRKHPPAHFVLPHKAAEDMEVGGYLIPKGATVNFMVAEMGRDER  420 (519)
T ss_pred             HHHHHHHHHHhCCCCCCCCHHHhhCChHHHHHHHHHhhcCCCCcccCCccCCCCccCCCEEECCCCEEEEChHHHhcCcc
Confidence            999999999986421            18999999999999998 56899999999999999999999998         


Q ss_pred             -----CcccCCcccCCCCC----C-CCCCccccccCCCCCCCcchhhhHHHHHHHHHHHhhhcC
Q 035560          345 -----DKFIPERFVGSNID----M-GGQNFEFIPFGSGRRICPGIHMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       345 -----~~f~PeRf~~~~~~----~-~~~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~fd  398 (398)
                           ++|+||||++++..    . ...+..++|||.|+|+|+|++||++|++++++.++++||
T Consensus       421 ~~~~p~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~  484 (519)
T PLN00168        421 EWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLGIAMLHLEYFVANMVREFE  484 (519)
T ss_pred             ccCCccccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHHcc
Confidence                 89999999975311    1 123468999999999999999999999999999999996


No 12 
>PTZ00404 cytochrome P450; Provisional
Probab=100.00  E-value=1.2e-58  Score=429.43  Aligned_cols=354  Identities=22%  Similarity=0.352  Sum_probs=270.0

Q ss_pred             CCCCCCCCCC----------cchHHHHHHHHHhhCCeEEEecCCccEEEecCHHHHHHHHHhcccccCCCCCcchh----
Q 035560           31 HNWQPVPVRY----------QKLAFYLWKISKQYGPVFSLRLGFRPAIIISSAKLAKEAFKTHDLQFAGRPVLLGS----   96 (398)
Q Consensus        31 ~~~ppgp~~~----------~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~~~~~~~i~~~~~~~~~~~~~~~~~----   96 (398)
                      .+.+|||+++          .+++..+.+++++||++|++++|+.++|+++||+++++++.++...|..++.....    
T Consensus        28 ~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~~~~~  107 (482)
T PTZ00404         28 KNELKGPIPIPILGNLHQLGNLPHRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREMFVDNFDNFSDRPKIPSIKHGT  107 (482)
T ss_pred             CCCCCCCCCCCeeccHhhhcccHHHHHHHHHHHhCCeeEEEecCCCEEEECCHHHHHHHHHhcchhhcCCCCcceeeeec
Confidence            4456777654          55788899999999999999999999999999999999998765555443322111    


Q ss_pred             ------------hHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchHHHHHHHHHHHHH
Q 035560           97 ------------QIDMRKRFVTSLLNSNRIEQFRRVRKDKIFRMVEKISKLGDAADEDASSKAPINVSEIAMTCVRNIIF  164 (398)
Q Consensus        97 ------------~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vdl~~~~~~~~~~~~~  164 (398)
                                  ..++|+. +++.|+.+.++++.+.+.+.++.+++.+.+..+       .++.+|+.+++..+++++++
T Consensus       108 ~~~~l~~~~g~~w~~~Rk~-~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~-------~~~~vd~~~~~~~~~~dvi~  179 (482)
T PTZ00404        108 FYHGIVTSSGEYWKRNREI-VGKAMRKTNLKHIYDLLDDQVDVLIESMKKIES-------SGETFEPRYYLTKFTMSAMF  179 (482)
T ss_pred             cCCceeccChHHHHHHHHH-HHHHHhhhccccHHHHHHHHHHHHHHHHHHHHh-------cCCccCHHHHHHHHHHHHHH
Confidence                        0055666 899999999999999999999999999976543       56679999999999999999


Q ss_pred             HHHhcccccccch---hHHhHHHHHHHHHhhhhcccccccccccchhh----hccc----hhhHHHHHHHHHHhhh----
Q 035560          165 RVTFRKRFEVDGT---AAVNRMDFLLAETQLLSGTIFFSDCSYSFIGN----CLDG----LTGMHRCLQKHFKDYA----  229 (398)
Q Consensus       165 ~~~fG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~----~~~~----~~~~~~~~~~~~~~~~----  229 (398)
                      .++||.+++..++   +...++.+.+............... ++++..    +...    .....+.+.+.+++++    
T Consensus       180 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  258 (482)
T PTZ00404        180 KYIFNEDISFDEDIHNGKLAELMGPMEQVFKDLGSGSLFDV-IEITQPLYYQYLEHTDKNFKKIKKFIKEKYHEHLKTID  258 (482)
T ss_pred             HHHhccccccccccchhHHHHHHHHHHHHHHHhCCCchhhh-hhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            9999998764321   1113445544444433222111111 222111    1111    1122222222222221    


Q ss_pred             -CCCCChHHHHHhhhhc-CCCCHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcChhHHHHHHHHHHHHhccchh-----
Q 035560          230 -GQQGDLIDDLLSLTKA-GYLTLDAVKAAIMEIFIGTTDTSKVTIAMAMTLLMKNPEAMKKAQEEVRSVVKDKGV-----  302 (398)
Q Consensus       230 -~~~~~~~~~ll~~~~~-~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~~-----  302 (398)
                       +...|+++.++++..+ ...+.+++++++.++++||+|||+++++|++++|++||++|+|+++||++++++...     
T Consensus       259 ~~~~~dll~~ll~~~~~~~~~~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~vq~kl~~Ei~~v~~~~~~~~~~~  338 (482)
T PTZ00404        259 PEVPRDLLDLLIKEYGTNTDDDILSILATILDFFLAGVDTSATSLEWMVLMLCNYPEIQEKAYNEIKSTVNGRNKVLLSD  338 (482)
T ss_pred             CCCcccHHHHHHHHhccCCcccHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhcCCCCCCccc
Confidence             1356899999987532 122233588999999999999999999999999999999999999999999875321     


Q ss_pred             ------HHHHHHHhhcCCCCCC-CCccccceeeee-cceEeCCCceEeeC--------------CcccCCcccCCCCCCC
Q 035560          303 ------LNAVIKETMRIQPATQ-FIPKATIESCVI-DGYHTPAKTMVLVN--------------DKFIPERFVGSNIDMG  360 (398)
Q Consensus       303 ------l~a~i~E~lRl~p~~~-~~~r~~~~d~~l-~g~~ip~g~~v~~~--------------~~f~PeRf~~~~~~~~  360 (398)
                            ++||++||||++|++| .++|.+.+|+++ +||.||+|+.|.++              ++|+||||+++.    
T Consensus       339 l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~l~~g~~Ip~Gt~V~~~~~a~hrdp~~~~dP~~F~PeRwl~~~----  414 (482)
T PTZ00404        339 RQSTPYTVAIIKETLRYKPVSPFGLPRSTSNDIIIGGGHFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNPD----  414 (482)
T ss_pred             cccChHHHHHHHHHHHhcCCcccccceeccCCEEecCCeEECCCCEEEeeHHHhhCCccccCCccccCccccCCCC----
Confidence                  9999999999999999 579999999999 99999999999998              899999998652    


Q ss_pred             CCCccccccCCCCCCCcchhhhHHHHHHHHHHHhhhcC
Q 035560          361 GQNFEFIPFGSGRRICPGIHMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       361 ~~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~fd  398 (398)
                       .+..++|||+|+|.|+|++||++|++++++.++++|+
T Consensus       415 -~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~  451 (482)
T PTZ00404        415 -SNDAFMPFSIGPRNCVGQQFAQDELYLAFSNIILNFK  451 (482)
T ss_pred             -CCCceeccCCCCCCCccHHHHHHHHHHHHHHHHHhcE
Confidence             4679999999999999999999999999999999996


No 13 
>PLN02500 cytochrome P450 90B1
Probab=100.00  E-value=4.2e-58  Score=426.02  Aligned_cols=350  Identities=18%  Similarity=0.298  Sum_probs=262.2

Q ss_pred             CCCCCCCCCCCCC---cc------------hHHHHHHHHHhhCCeEEEecCCccEEEecCHHHHHHHHHhcccccCCCCC
Q 035560           28 SSPHNWQPVPVRY---QK------------LAFYLWKISKQYGPVFSLRLGFRPAIIISSAKLAKEAFKTHDLQFAGRPV   92 (398)
Q Consensus        28 ~~~~~~ppgp~~~---~~------------~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~~~~~~~i~~~~~~~~~~~~~   92 (398)
                      +++.+.||||+++   ++            ++.++.++.++||++|++++|++++|+++||+++++++.+++..|+.+..
T Consensus        34 ~~~~~~PPgp~~~PiiGn~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~vl~~~~~~f~~~~~  113 (490)
T PLN02500         34 QKRFNLPPGNMGWPFLGETIGYLKPYSATSIGEFMEQHISRYGKIYRSNLFGEPTIVSADAGLNRFILQNEGRLFECSYP  113 (490)
T ss_pred             cCCCCCCCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhcccccccccCCCeEEecCHHHHHHHHhCCCCeEEeeCc
Confidence            3555789999876   22            23457888999999999999999999999999999999877655542211


Q ss_pred             cc-----h----------hhHHHHHHHHHhhcchhHHHH-HHHHHHHHHHHHHHHHHhhcccccccccCCCCcchHHHHH
Q 035560           93 LL-----G----------SQIDMRKRFVTSLLNSNRIEQ-FRRVRKDKIFRMVEKISKLGDAADEDASSKAPINVSEIAM  156 (398)
Q Consensus        93 ~~-----~----------~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vdl~~~~~  156 (398)
                      ..     .          ...++|+. +++.|+...++. +.+.+.+.+..+++.+.           .+..+|+.+.+.
T Consensus       114 ~~~~~~~g~~~~~~~~g~~wr~~Rk~-~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~vd~~~~~~  181 (490)
T PLN02500        114 RSIGGILGKWSMLVLVGDMHRDMRSI-SLNFLSHARLRTHLLKEVERHTLLVLDSWK-----------ENSTFSAQDEAK  181 (490)
T ss_pred             hHHHHHhCcccccccCCHHHHHHHHH-HHHhcChHHHHHHHHHHHHHHHHHHHHHhC-----------CCCCEEehHHHH
Confidence            00     0          00166666 679999988876 56777777777777764           445799999999


Q ss_pred             HHHHHHHHHHHhcccccccchhHHhHHHHHHHHHhhhhcccccccccccch--hhhccchhhHHHHHHHHHHhhh-----
Q 035560          157 TCVRNIIFRVTFRKRFEVDGTAAVNRMDFLLAETQLLSGTIFFSDCSYSFI--GNCLDGLTGMHRCLQKHFKDYA-----  229 (398)
Q Consensus       157 ~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l--~~~~~~~~~~~~~~~~~~~~~~-----  229 (398)
                      .++++++++++||.+.+..  +. .++...+.........  .... +|..  ++.........+.+.+.+++++     
T Consensus       182 ~~~~~vi~~~~fg~~~~~~--~~-~~~~~~~~~~~~~~~~--~~~~-~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  255 (490)
T PLN02500        182 KFTFNLMAKHIMSMDPGEE--ET-EQLKKEYVTFMKGVVS--APLN-FPGTAYRKALKSRATILKFIERKMEERIEKLKE  255 (490)
T ss_pred             HHHHHHHHHHHhCCCCCch--HH-HHHHHHHHHHHhhhhc--chhc-CCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            9999999999999876432  11 2333222222221111  1112 3432  1122222223333333333321     


Q ss_pred             C----CCCChHHHHHhhhhcCCCCHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcChhHHHHHHHHHHHHhcc-----c
Q 035560          230 G----QQGDLIDDLLSLTKAGYLTLDAVKAAIMEIFIGTTDTSKVTIAMAMTLLMKNPEAMKKAQEEVRSVVKD-----K  300 (398)
Q Consensus       230 ~----~~~~~~~~ll~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~-----~  300 (398)
                      +    ...|+++.+++..   .++++++.+++.++++||+|||+++++|++++|++||++|+|+++||+++.+.     .
T Consensus       256 ~~~~~~~~d~l~~ll~~~---~ls~~~i~~~~~~ll~AG~dTta~tl~~~l~~L~~~Pevq~kl~~Ei~~v~~~~~~~~~  332 (490)
T PLN02500        256 EDESVEEDDLLGWVLKHS---NLSTEQILDLILSLLFAGHETSSVAIALAIFFLQGCPKAVQELREEHLEIARAKKQSGE  332 (490)
T ss_pred             ccCCCCcchHHHHHHhcc---CCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhccccCCC
Confidence            1    2468999998752   58999999999999999999999999999999999999999999999988631     1


Q ss_pred             -h----------hHHHHHHHhhcCCCCCCCCccccceeeeecceEeCCCceEeeC--------------CcccCCcccCC
Q 035560          301 -G----------VLNAVIKETMRIQPATQFIPKATIESCVIDGYHTPAKTMVLVN--------------DKFIPERFVGS  355 (398)
Q Consensus       301 -~----------~l~a~i~E~lRl~p~~~~~~r~~~~d~~l~g~~ip~g~~v~~~--------------~~f~PeRf~~~  355 (398)
                       .          .++|||+|+||++|++|.++|.+.+|++++||.||||+.|.++              ++|+||||+++
T Consensus       333 ~~~~~~d~~~lpyl~avikEtlRl~P~~~~~~R~~~~d~~~~G~~IPkGt~V~~~~~~~hrdp~~~~dP~~F~PeRfl~~  412 (490)
T PLN02500        333 SELNWEDYKKMEFTQCVINETLRLGNVVRFLHRKALKDVRYKGYDIPSGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQN  412 (490)
T ss_pred             CCCCHHHhccCHHHHHHHHHHHhcCCCccCeeeEeCCCceeCCEEECCCCEEEechhhcccCcccCCCccccChhhccCC
Confidence             1          1999999999999999987899999999999999999999998              89999999975


Q ss_pred             CCCCC------CCCccccccCCCCCCCcchhhhHHHHHHHHHHHhhhcC
Q 035560          356 NIDMG------GQNFEFIPFGSGRRICPGIHMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       356 ~~~~~------~~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~fd  398 (398)
                      +....      ..+..++|||.|+|.|+|++||++|+++++++++++|+
T Consensus       413 ~~~~~~~~~~~~~~~~~lpFG~G~R~CiG~~~A~~el~~~la~ll~~f~  461 (490)
T PLN02500        413 NNRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKLEMAVFIHHLVLNFN  461 (490)
T ss_pred             CcccccccccCCCCCCCcCCCCCCCCCCcHHHHHHHHHHHHHHHHhccE
Confidence            42211      24578999999999999999999999999999999996


No 14 
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=3.6e-58  Score=398.88  Aligned_cols=364  Identities=22%  Similarity=0.325  Sum_probs=282.3

Q ss_pred             CCCCCCCCCCCC--------------cchHHHHHHHHHhhCCeEEEe-cCCccEEEecCHHHHHHHHHhcccccCCCC-C
Q 035560           29 SPHNWQPVPVRY--------------QKLAFYLWKISKQYGPVFSLR-LGFRPAIIISSAKLAKEAFKTHDLQFAGRP-V   92 (398)
Q Consensus        29 ~~~~~ppgp~~~--------------~~~~~~~~~~~~kyG~v~~~~-~~~~~~vvv~~~~~~~~i~~~~~~~~~~~~-~   92 (398)
                      ++..-+|||.++              .+.++....+++|||+||+.. +|+...|.+.||++++.+|++.+ .+..|+ .
T Consensus        47 r~~~~IP~p~~~~~l~~l~~~~~~~~~~lh~~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r~EG-~~P~Rp~~  125 (519)
T KOG0159|consen   47 RPFEEIPGPKGLPFLGLLWIWRAGGATKLHQHIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFRNEG-KYPFRPLL  125 (519)
T ss_pred             CChhhcCCCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHhcCC-CCCCcccc
Confidence            334446777776              667888999999999999999 78889999999999999998665 345554 1


Q ss_pred             cchhhH--------------------HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchH
Q 035560           93 LLGSQI--------------------DMRKRFVTSLLNSNRIEQFRRVRKDKIFRMVEKISKLGDAADEDASSKAPINVS  152 (398)
Q Consensus        93 ~~~~~~--------------------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vdl~  152 (398)
                      ...+..                    +.|..+...+++++.++.+.+.+++.+++++..+....+    +.+...+.|+.
T Consensus       126 ~~~w~~~rd~~~~~~Gl~~~~G~~W~~~Rs~ln~~ll~P~~v~~yl~~l~~V~~DF~~~l~~~r~----~~~~~~~~D~~  201 (519)
T KOG0159|consen  126 IEPWVAYRDFRGGVCGLFLLEGPEWQRLRSALNPLLLQPQAVRRYLPQLNAVSDDFVERLRAQRD----PERGELVPDFA  201 (519)
T ss_pred             cchhhhhHHhhccCCCcccCCCHHHHHHHHHhchhhcCHHHHHHHhhHHHHHHHHHHHHHHHHhc----ccccccchhHH
Confidence            111111                    788887778899999999999999999999999987754    12255678999


Q ss_pred             HHHHHHHHHHHHHHHhcccccccch---hHHhHHHHHHHHHhhhhccccc----ccc-cccchhhhccchhhHHHHHHHH
Q 035560          153 EIAMTCVRNIIFRVTFRKRFEVDGT---AAVNRMDFLLAETQLLSGTIFF----SDC-SYSFIGNCLDGLTGMHRCLQKH  224 (398)
Q Consensus       153 ~~~~~~~~~~~~~~~fG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~-~~p~l~~~~~~~~~~~~~~~~~  224 (398)
                      +.+.+++++.+|.++||.+++....   +..+.+.+++..++........    ..+ ..|.++.+......+.+...++
T Consensus       202 ~~l~~wslEsi~~V~l~~rlG~L~~~~~~~a~~fi~ai~~~F~~s~~l~~~p~l~r~~~t~~wk~~~~~~D~i~~~~~~~  281 (519)
T KOG0159|consen  202 QELYRWSLESICLVLLGTRLGLLGESPPSEAQQFIDAIKKMFESSAQLMLMPSLWRYFPTKVWKDFVRAWDQIFDVGDKY  281 (519)
T ss_pred             HHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHhHHHHHhcchHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999987643   2236677777766655443211    000 0112222222222233333333


Q ss_pred             HHh--h--h-CCC--CChHHHHHhhhhcCCCCHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcChhHHHHHHHHHHHHh
Q 035560          225 FKD--Y--A-GQQ--GDLIDDLLSLTKAGYLTLDAVKAAIMEIFIGTTDTSKVTIAMAMTLLMKNPEAMKKAQEEVRSVV  297 (398)
Q Consensus       225 ~~~--~--~-~~~--~~~~~~ll~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~  297 (398)
                      +++  +  + +..  ...-+.+++....+.++.+++..++++++.||.||||+++.|+||+|++||++|++|++||.++.
T Consensus       282 Id~~l~~l~~~~~~~~~~~~~l~~~L~~~~l~~k~~~~~~~dll~aGvDTTs~tl~~~Ly~LarnP~~Q~~L~~Ei~~~~  361 (519)
T KOG0159|consen  282 IDNALEELEKQDSAGSEYTGSLLELLLRKELSRKDAKANVMDLLAAGVDTTSNTLLWALYELARNPEVQQRLREEILAVL  361 (519)
T ss_pred             HHHHHHHHHhccccccchhHHHHHHHHHccCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcChHHHHHHHHHHHhhC
Confidence            333  1  1 111  23333333333333689999999999999999999999999999999999999999999999998


Q ss_pred             ccchh------------HHHHHHHhhcCCCCCCCCccccceeeeecceEeCCCceEeeC--------------CcccCCc
Q 035560          298 KDKGV------------LNAVIKETMRIQPATQFIPKATIESCVIDGYHTPAKTMVLVN--------------DKFIPER  351 (398)
Q Consensus       298 ~~~~~------------l~a~i~E~lRl~p~~~~~~r~~~~d~~l~g~~ip~g~~v~~~--------------~~f~PeR  351 (398)
                      .....            |+||||||+|++|.+|...|...+|.+++||.|||||.|.++              .+|+|||
T Consensus       362 p~~~~~~~~~~l~~~pyLrAcIKEtlRlyPv~~~~~R~l~~D~vL~gY~vPagT~V~l~~~~~~r~~~~F~~p~~F~PeR  441 (519)
T KOG0159|consen  362 PSGNSELTQKALTNMPYLRACIKETLRLYPVVPGNGRVLPKDLVLSGYHVPAGTLVVLFLYVLGRNPAYFPDPEEFLPER  441 (519)
T ss_pred             CCcccccchHHHhhCHHHHHHHHhhhceeccccccccccchhceeccceecCCCeEEEeehhhccChhhCCCccccChhh
Confidence            87421            999999999999999999999999999999999999988665              8999999


Q ss_pred             ccCCCCCCCCCCccccccCCCCCCCcchhhhHHHHHHHHHHHhhhcC
Q 035560          352 FVGSNIDMGGQNFEFIPFGSGRRICPGIHMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       352 f~~~~~~~~~~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~fd  398 (398)
                      |+.++. ...+++.++|||.|+|+|+|+++|++|+.+++|+++++||
T Consensus       442 WL~~~~-~~~~pF~~LPFGfG~R~C~GRRiAElEl~llLarllr~f~  487 (519)
T KOG0159|consen  442 WLKPST-KTIHPFASLPFGFGPRMCLGRRIAELELHLLLARLLRNFK  487 (519)
T ss_pred             hccccc-CCCCCceecCCCCCccccchHHHHHHHHHHHHHHHHHhcc
Confidence            999863 3457999999999999999999999999999999999996


No 15 
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=100.00  E-value=8e-59  Score=426.91  Aligned_cols=353  Identities=22%  Similarity=0.377  Sum_probs=268.4

Q ss_pred             CCCCCCCCCCC-----------c--chHHHHHHHHHhhCCeEEEecCCccEEEecCHHHHHHHHHhcccccCCCCCcc-h
Q 035560           30 PHNWQPVPVRY-----------Q--KLAFYLWKISKQYGPVFSLRLGFRPAIIISSAKLAKEAFKTHDLQFAGRPVLL-G   95 (398)
Q Consensus        30 ~~~~ppgp~~~-----------~--~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~~~~~~~i~~~~~~~~~~~~~~~-~   95 (398)
                      ....||||.++           .  ....++.++..+||++|+.|+|+.+.++++||+.+++|+.++...+.+.+... .
T Consensus        33 ~~~~~~gp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~~~~~~~~k~~~~~~~  112 (497)
T KOG0157|consen   33 KKKLPPGPPGWPLIGNLLEFLKPLEEILDFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILKSSNENYPKGPDYPES  112 (497)
T ss_pred             HhccCCCCCCCCcccchHHhhcchhHHHHHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHhcCcccCCCchhHHHH
Confidence            45678888876           2  45678899999999999999999999999999999999964444333332222 1


Q ss_pred             h---------------hHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchHHHHHHHHH
Q 035560           96 S---------------QIDMRKRFVTSLLNSNRIEQFRRVRKDKIFRMVEKISKLGDAADEDASSKAPINVSEIAMTCVR  160 (398)
Q Consensus        96 ~---------------~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vdl~~~~~~~~~  160 (398)
                      .               ..++|+. ++++|+.+.++.+...+.+.+..++..+....        .+..+|+++.+.++++
T Consensus       113 ~~~~lG~gll~~~g~~W~~~Rk~-~~~~f~~~~L~~~~~~~~~~~~~~~~~~~~~~--------~~~~vd~~~~~~~~tl  183 (497)
T KOG0157|consen  113 LKPWLGDGLLFSDGEKWHKHRKL-LTPAFHFEILKSFVPVFIESSLILLLLLELAA--------SGEEVDLQDLLKRLTL  183 (497)
T ss_pred             HHHHhcCccccCCchHHHHHHhh-ccHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--------cCCeEcHHHHHHHHHH
Confidence            1               0156666 89999999999999999999998888877643        2233999999999999


Q ss_pred             HHHHHHHhcccc-cccchhHHhHHHHHHHHHhhhhccccccccccc-chhhhcc----------chhhHHHHHHHHHHhh
Q 035560          161 NIIFRVTFRKRF-EVDGTAAVNRMDFLLAETQLLSGTIFFSDCSYS-FIGNCLD----------GLTGMHRCLQKHFKDY  228 (398)
Q Consensus       161 ~~~~~~~fG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~l~~~~~----------~~~~~~~~~~~~~~~~  228 (398)
                      |++|.++||... +...... .++..++...........   . .| +.. +..          ......+.+.+.++++
T Consensus       184 d~i~~~~~G~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~---~-~p~~~~-~~~~~~~~~~~~~a~~~~~~~~~~iI~~r  257 (497)
T KOG0157|consen  184 DIICKTAMGPESLDAEGPEL-FEYVQAFDDLTELISKRI---N-LPLGTK-FLYGLKSERKLKKARKILHDFLEKIIRER  257 (497)
T ss_pred             HHHHHHhcCCccccccCCcc-cHHHHHHHHHHHHHHHHH---c-Cchhhh-HHhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999322 2222222 345555554333332211   1 33 222 111          1122233333333332


Q ss_pred             h-----------CCCCChHHHHHhhhhcCCCCHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcChhHHHHHHHHHHHHh
Q 035560          229 A-----------GQQGDLIDDLLSLTKAGYLTLDAVKAAIMEIFIGTTDTSKVTIAMAMTLLMKNPEAMKKAQEEVRSVV  297 (398)
Q Consensus       229 ~-----------~~~~~~~~~ll~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~  297 (398)
                      +           ....|+++.+....+ ..++++++.+++.++++||+||||++++|++++|+.||++|+++++|+++++
T Consensus       258 r~~~~~~~~~~~~~~~d~L~~~~~~~~-~~l~~~~i~d~v~tf~faG~DTTss~ltw~l~~La~hP~vq~k~~eEi~~i~  336 (497)
T KOG0157|consen  258 REELEKEGSGEEKKRLDFLDTLLLEED-KPLTDEDIRDEVDTFMFAGHDTTSSALTWTLWLLAKHPEVQEKLREEVDEIL  336 (497)
T ss_pred             HHHHHhcCCcccchhhhHHHHHHHhcc-CCCCHHHHHHHHHHheeeccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            2           123566665332222 4799999999999999999999999999999999999999999999999998


Q ss_pred             ccc-h-----------hHHHHHHHhhcCCCCCCCCccccceeeeec-ceEeCCCceEeeC---------------CcccC
Q 035560          298 KDK-G-----------VLNAVIKETMRIQPATQFIPKATIESCVID-GYHTPAKTMVLVN---------------DKFIP  349 (398)
Q Consensus       298 ~~~-~-----------~l~a~i~E~lRl~p~~~~~~r~~~~d~~l~-g~~ip~g~~v~~~---------------~~f~P  349 (398)
                      +.. .           .+++||+|||||+||+|.+.|.+.+|++++ ||.||||+.|.++               ++|||
T Consensus       337 ~~~~~~~~~~~~~~m~yl~~vi~EsLRLyppvp~~~R~~~~d~~l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~P  416 (497)
T KOG0157|consen  337 GNRDDKWEVEKLDQMKYLEMVIKESLRLYPPVPLVARKATKDVKLPGGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDP  416 (497)
T ss_pred             CCCCCCCChhhhhhhHHHHHHHHHHhccCCCCchhhcccCCCeEcCCCcEeCCCCEEEEehHHhccCccccCCChhhcCc
Confidence            632 1           189999999999999999999999999994 8999999999998               68999


Q ss_pred             CcccCCCCCCCCCCccccccCCCCCCCcchhhhHHHHHHHHHHHhhhcC
Q 035560          350 ERFVGSNIDMGGQNFEFIPFGSGRRICPGIHMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       350 eRf~~~~~~~~~~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~fd  398 (398)
                      |||+++.....+++++|+|||+|+|.|+|++||++|+++++++++++|+
T Consensus       417 eRf~~~~~~~~~~~~~fipFsaGpR~CiG~~fA~lemKv~l~~ll~~f~  465 (497)
T KOG0157|consen  417 ERFLDGEEKAKRHPFAFIPFSAGPRNCIGQKFAMLEMKVVLAHLLRRFR  465 (497)
T ss_pred             cccCCCCCcCCCCCccccCCCCCcccchhHHHHHHHHHHHHHHHHHheE
Confidence            9999764333557899999999999999999999999999999999995


No 16 
>PLN02774 brassinosteroid-6-oxidase
Probab=100.00  E-value=1.6e-57  Score=418.80  Aligned_cols=345  Identities=16%  Similarity=0.208  Sum_probs=260.9

Q ss_pred             CCCCCCCCC----------cchHHHHHHHHHhhCCeEEEecCCccEEEecCHHHHHHHHHhcccccCCCCCcch------
Q 035560           32 NWQPVPVRY----------QKLAFYLWKISKQYGPVFSLRLGFRPAIIISSAKLAKEAFKTHDLQFAGRPVLLG------   95 (398)
Q Consensus        32 ~~ppgp~~~----------~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~~~~~~~i~~~~~~~~~~~~~~~~------   95 (398)
                      +.||||+++          +++..++++++++||++|+++++++++++++||+.+++++.++...|..+.....      
T Consensus        31 ~~ppgp~~~P~~G~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~lg~  110 (463)
T PLN02774         31 GLPPGTMGWPLFGETTEFLKQGPDFMKNQRLRYGSFFKSHILGCPTIVSMDPELNRYILMNEGKGLVPGYPQSMLDILGT  110 (463)
T ss_pred             CCCCCCCCCCchhhHHHHHHhhHHHHHHHHHHhccCccceecCCCeEEEeCHHHHHHHHcCCCCeEEecCCHHHHHHhCc
Confidence            567777654          4456788999999999999999999999999999999999866554422110000      


Q ss_pred             ---------hhHHHHHHHHHhhcchhHHHH-HHHHHHHHHHHHHHHHHhhcccccccccCCCCcchHHHHHHHHHHHHHH
Q 035560           96 ---------SQIDMRKRFVTSLLNSNRIEQ-FRRVRKDKIFRMVEKISKLGDAADEDASSKAPINVSEIAMTCVRNIIFR  165 (398)
Q Consensus        96 ---------~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vdl~~~~~~~~~~~~~~  165 (398)
                               ....+|+. +++.|++..++. +.+.+.+.++++++.+.           .++++|+.+.+..+++++++.
T Consensus       111 ~~~~~~~g~~w~~~R~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~~~~  178 (463)
T PLN02774        111 CNIAAVHGSTHRYMRGS-LLSLISPTMIRDHLLPKIDEFMRSHLSGWD-----------GLKTIDIQEKTKEMALLSALK  178 (463)
T ss_pred             cchhhcCCHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHHHHHhhC-----------CCCCEEeeHHHHHHHHHHHHH
Confidence                     00066666 688999988875 78888888888887764           446799999999999999999


Q ss_pred             HHhcccccccchhHHhHHHHHHHHHhhhhcccccccccccch--hhhccchhhHHHHHHHHHHhhh---CCCCChHHHHH
Q 035560          166 VTFRKRFEVDGTAAVNRMDFLLAETQLLSGTIFFSDCSYSFI--GNCLDGLTGMHRCLQKHFKDYA---GQQGDLIDDLL  240 (398)
Q Consensus       166 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ll  240 (398)
                      ++||.+.+.   .. .++...+......  ....... +|..  +..........+.+.+.+++++   .+..|+++.++
T Consensus       179 ~~~g~~~~~---~~-~~~~~~~~~~~~~--~~~~~~~-lp~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~d~l~~ll  251 (463)
T PLN02774        179 QIAGTLSKP---IS-EEFKTEFFKLVLG--TLSLPID-LPGTNYRSGVQARKNIVRMLRQLIQERRASGETHTDMLGYLM  251 (463)
T ss_pred             HHcCCCChH---HH-HHHHHHHHHHhcc--cccCCcC-CCChhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence            999976542   11 2222222222211  1111122 3421  1111212223333444444433   23579999998


Q ss_pred             hhhhcC-CCCHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcChhHHHHHHHHHHHHhccc--------------hhHHH
Q 035560          241 SLTKAG-YLTLDAVKAAIMEIFIGTTDTSKVTIAMAMTLLMKNPEAMKKAQEEVRSVVKDK--------------GVLNA  305 (398)
Q Consensus       241 ~~~~~~-~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~--------------~~l~a  305 (398)
                      +...++ .++++++.+++.++++||+|||+++++|++++|++||++|+|+++||+++.+..              +.++|
T Consensus       252 ~~~~~~~~~s~~ei~~~~~~ll~Ag~dTt~~~l~w~l~~L~~~P~~q~kl~~Ei~~~~~~~~~~~~~~~~~l~~lpyl~a  331 (463)
T PLN02774        252 RKEGNRYKLTDEEIIDQIITILYSGYETVSTTSMMAVKYLHDHPKALQELRKEHLAIRERKRPEDPIDWNDYKSMRFTRA  331 (463)
T ss_pred             hCccCCCCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCCCCCCCHHHHhcCcHHHH
Confidence            744332 589999999999999999999999999999999999999999999999987531              11899


Q ss_pred             HHHHhhcCCCCCCCCccccceeeeecceEeCCCceEeeC--------------CcccCCcccCCCCCCCCCCccccccCC
Q 035560          306 VIKETMRIQPATQFIPKATIESCVIDGYHTPAKTMVLVN--------------DKFIPERFVGSNIDMGGQNFEFIPFGS  371 (398)
Q Consensus       306 ~i~E~lRl~p~~~~~~r~~~~d~~l~g~~ip~g~~v~~~--------------~~f~PeRf~~~~~~~~~~~~~~~~Fg~  371 (398)
                      |++|+||++|+++.++|.+.+|++++||.||||+.|.++              ++|+||||++++.  . ....++|||+
T Consensus       332 ~ikE~lRl~P~v~~~~R~~~~d~~l~g~~IpkGt~v~~~~~~~~rdp~~~~dP~~F~PeRfl~~~~--~-~~~~~lpFG~  408 (463)
T PLN02774        332 VIFETSRLATIVNGVLRKTTQDMELNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLDKSL--E-SHNYFFLFGG  408 (463)
T ss_pred             HHHHHHhcCCCCCCcccccCCCeeECCEEECCCCEEEEehHHhcCCcccCCChhccCchhcCCCCc--C-CCccccCcCC
Confidence            999999999999988899999999999999999999998              8999999997532  1 2236999999


Q ss_pred             CCCCCcchhhhHHHHHHHHHHHhhhcC
Q 035560          372 GRRICPGIHMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       372 G~r~C~G~~la~~~~~~~l~~ll~~fd  398 (398)
                      |+|.|+|++||.+|++++++.|+++|+
T Consensus       409 G~r~C~G~~~A~~e~~~~la~Ll~~f~  435 (463)
T PLN02774        409 GTRLCPGKELGIVEISTFLHYFVTRYR  435 (463)
T ss_pred             CCCcCCcHHHHHHHHHHHHHHHHHhce
Confidence            999999999999999999999999996


No 17 
>PF00067 p450:  Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature;  InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=100.00  E-value=8.6e-58  Score=424.65  Aligned_cols=355  Identities=26%  Similarity=0.460  Sum_probs=277.5

Q ss_pred             CCCCCCC------------cchHHHHHHHHHhhCCeEEEecCCccEEEecCHHHHHHHHHhcccccCCCCCcchhh----
Q 035560           34 QPVPVRY------------QKLAFYLWKISKQYGPVFSLRLGFRPAIIISSAKLAKEAFKTHDLQFAGRPVLLGSQ----   97 (398)
Q Consensus        34 ppgp~~~------------~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~~~~~~~i~~~~~~~~~~~~~~~~~~----   97 (398)
                      ||||+++            +.++.++.++++|||+||+++++++++++|+||+.+++++.++...++.++......    
T Consensus         1 Ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~~~~~~~~~~~~~~~~~~   80 (463)
T PF00067_consen    1 PPGPPPLPILGNLLQFRRKGNPHEFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRSKYFSFRPRPPWFEIFRG   80 (463)
T ss_dssp             SSCSSSBTTTBTHHHHHTTHHHHHHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTTTTEEEEHCHHHHHHHHH
T ss_pred             CcCCCCcCceeEHHHhcCCCcHHHHHHHHHHHhCCEEEEeEecccccccccchhhccccccccccccccccccccccccc
Confidence            6777665            457788999999999999999999999999999999999987765554432111110    


Q ss_pred             ------------H---HHHHHHHHhhcchh-HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchHHHHHHHHHH
Q 035560           98 ------------I---DMRKRFVTSLLNSN-RIEQFRRVRKDKIFRMVEKISKLGDAADEDASSKAPINVSEIAMTCVRN  161 (398)
Q Consensus        98 ------------~---~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vdl~~~~~~~~~~  161 (398)
                                  .   .+|+. +.+.|+.. .+ .+.+.+.+.++.+++.+.....       .++.+|+.+++..++++
T Consensus        81 ~~~~~~l~~~~~~~~~~~R~~-~~~~~~~~~~~-~~~~~i~~~~~~l~~~l~~~~~-------~~~~vd~~~~~~~~~~d  151 (463)
T PF00067_consen   81 PFGGKGLFFSDGERWRRQRRL-LAPAFSSKKIL-KLEPLIDEEAEELIDQLRKKAG-------SSGPVDLFDWLRRFALD  151 (463)
T ss_dssp             HHTTTSSTTSSHHHHHHHHHH-HHHHHSHHHHH-HHHHHHHHHHHHHHHHHHHTTT-------SESEEEHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccccc-------ccceeeeeccccccccc
Confidence                        0   55666 78888887 66 8999999999999999998765       44479999999999999


Q ss_pred             HHHHHHhcccccccchhHHhHHHHHHHHHhhhhccc--ccccccccchhhhc----cchh----hHHHHHHHHHHhhh--
Q 035560          162 IIFRVTFRKRFEVDGTAAVNRMDFLLAETQLLSGTI--FFSDCSYSFIGNCL----DGLT----GMHRCLQKHFKDYA--  229 (398)
Q Consensus       162 ~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~l~~~~----~~~~----~~~~~~~~~~~~~~--  229 (398)
                      +++.++||.+++..+.+...++.+.+..........  ..... +|++....    +...    ...+.+.+.+++.+  
T Consensus       152 ~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  230 (463)
T PF00067_consen  152 VIGRVLFGKDFGSLDDEDFEEFLEAFDELFELLSNFFWNLPFF-FPWLKYLPTPLFRRFKRARDRLRKYIKEIIEERREE  230 (463)
T ss_dssp             HHHHHHHSSHHHGTTHHHHHHHHHHHHHHHHHHHSHHHHHHHH-HHHHCTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ccccccccceeeecccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            999999999988544443245666666655433221  11222 44333111    1111    12222233333322  


Q ss_pred             ---C--CCCChHHHHHhhh--hcC--CCCHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcChhHHHHHHHHHHHHhccc
Q 035560          230 ---G--QQGDLIDDLLSLT--KAG--YLTLDAVKAAIMEIFIGTTDTSKVTIAMAMTLLMKNPEAMKKAQEEVRSVVKDK  300 (398)
Q Consensus       230 ---~--~~~~~~~~ll~~~--~~~--~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~  300 (398)
                         +  ...|+++.++...  .++  .++++++.+.+..+++||++||+.+++|++++|++||++|+++++||+++.++.
T Consensus       231 ~~~~~~~~~d~l~~ll~~~~~~~~~~~ls~~~i~~~~~~~~~ag~dtt~~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~  310 (463)
T PF00067_consen  231 LDDGDESRRDLLDSLLQASSDSDGPSGLSDEEIAAELLTLLFAGHDTTASTLSWTLYELAKNPEVQEKLREEIDSVLGDG  310 (463)
T ss_dssp             HHSSSSSCSSHHHHHHHHHHTTTTTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTTS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence               2  4789999999986  222  699999999999999999999999999999999999999999999999998653


Q ss_pred             h-----------hHHHHHHHhhcCCCCCC-CCccccceeeeecceEeCCCceEeeC--------------CcccCCcccC
Q 035560          301 G-----------VLNAVIKETMRIQPATQ-FIPKATIESCVIDGYHTPAKTMVLVN--------------DKFIPERFVG  354 (398)
Q Consensus       301 ~-----------~l~a~i~E~lRl~p~~~-~~~r~~~~d~~l~g~~ip~g~~v~~~--------------~~f~PeRf~~  354 (398)
                      .           .|+|||+||+|++|+++ .++|.+.+|++++||.||||+.|.++              ++|+||||++
T Consensus       311 ~~~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~R~~~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~P~R~~~  390 (463)
T PF00067_consen  311 REITFEDLSKLPYLDAVIKETLRLYPPVPFSLPRVATEDVTLGGYFIPKGTIVIVSIYALHRDPEYFPDPDEFDPERFLD  390 (463)
T ss_dssp             SSHHHHHHGTGHHHHHHHHHHHHHSTSSSTEEEEEESSSEEETTEEEETTSEEEEEHHHHTTSTTTSSSTTS--TTGGBT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            2           19999999999999999 89999999999999999999999998              8999999999


Q ss_pred             CCCCCCCCCccccccCCCCCCCcchhhhHHHHHHHHHHHhhhcC
Q 035560          355 SNIDMGGQNFEFIPFGSGRRICPGIHMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       355 ~~~~~~~~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~fd  398 (398)
                      ++......+..++|||.|+|.|+|++||++|++++++.++++||
T Consensus       391 ~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~f~  434 (463)
T PF00067_consen  391 ERGISNRPSFAFLPFGAGPRMCPGRNLAMMEMKVFLAKLLRRFD  434 (463)
T ss_dssp             TTSTBCSSSTTSSTTESSTTS-TTHHHHHHHHHHHHHHHHHHEE
T ss_pred             cccccccccccccccccccccchHHHHHHHHHHHHHHHHHHhCE
Confidence            86523357889999999999999999999999999999999996


No 18 
>PLN02290 cytokinin trans-hydroxylase
Probab=100.00  E-value=5.2e-57  Score=421.70  Aligned_cols=334  Identities=23%  Similarity=0.363  Sum_probs=254.6

Q ss_pred             HHHHHHhhCCeEEEecCCccEEEecCHHHHHHHHHhcccccCCCCCcch--h---------------hHHHHHHHHHhhc
Q 035560           47 LWKISKQYGPVFSLRLGFRPAIIISSAKLAKEAFKTHDLQFAGRPVLLG--S---------------QIDMRKRFVTSLL  109 (398)
Q Consensus        47 ~~~~~~kyG~v~~~~~~~~~~vvv~~~~~~~~i~~~~~~~~~~~~~~~~--~---------------~~~~r~~~~~~~~  109 (398)
                      +.+++++||++|++++|+.+.++++||+.+++++.++. .+..++....  .               ..++|+. +++.|
T Consensus        86 ~~~~~~~yG~i~~~~~g~~~~vvv~dp~~v~~il~~~~-~~~~r~~~~~~~~~~~~g~~l~~~~g~~Wk~~Rk~-~~~~f  163 (516)
T PLN02290         86 YVAWSKQYGKRFIYWNGTEPRLCLTETELIKELLTKYN-TVTGKSWLQQQGTKHFIGRGLLMANGADWYHQRHI-AAPAF  163 (516)
T ss_pred             HHHHHHHhCCeEEEccCCccEEEECCHHHHHHHHhcCC-CCCCCcchhhhHHHHHhcCCccccCchHHHHHHhh-ccccc
Confidence            56789999999999999999999999999999998653 3444432110  0               0056666 78999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchHHHHHHHHHHHHHHHHhcccccccchhHHhHHHHHHHH
Q 035560          110 NSNRIEQFRRVRKDKIFRMVEKISKLGDAADEDASSKAPINVSEIAMTCVRNIIFRVTFRKRFEVDGTAAVNRMDFLLAE  189 (398)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~~~  189 (398)
                      +..+++.+.+.+.++++.+++.+.+..+.      ++..+|+.+++..++++++++++||.+++..     +++.+.+..
T Consensus       164 ~~~~l~~~~~~i~~~~~~l~~~l~~~~~~------~~~~vd~~~~~~~~~~~vi~~~~fG~~~~~~-----~~~~~~~~~  232 (516)
T PLN02290        164 MGDRLKGYAGHMVECTKQMLQSLQKAVES------GQTEVEIGEYMTRLTADIISRTEFDSSYEKG-----KQIFHLLTV  232 (516)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCceEEhHHHHHHHHHHHHHHHHcCCccccc-----hHHHHHHHH
Confidence            99999999999999999999999765320      2357999999999999999999999987642     122222222


Q ss_pred             Hhhhhcccccccccccchhhhcc---------chhhHHHHHHHHHHhhh-----C----CCCChHHHHHhhhhc-----C
Q 035560          190 TQLLSGTIFFSDCSYSFIGNCLD---------GLTGMHRCLQKHFKDYA-----G----QQGDLIDDLLSLTKA-----G  246 (398)
Q Consensus       190 ~~~~~~~~~~~~~~~p~l~~~~~---------~~~~~~~~~~~~~~~~~-----~----~~~~~~~~ll~~~~~-----~  246 (398)
                      ............. +|++. +++         ....+.+.+.+.+++++     +    ...|+++.+++..++     .
T Consensus       233 ~~~~~~~~~~~~~-~p~~~-~~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~  310 (516)
T PLN02290        233 LQRLCAQATRHLC-FPGSR-FFPSKYNREIKSLKGEVERLLMEIIQSRRDCVEIGRSSSYGDDLLGMLLNEMEKKRSNGF  310 (516)
T ss_pred             HHHHHHHhhhhhc-Cchhh-hCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCHHHHHHHhccccCCCCC
Confidence            2211111111111 33322 111         01112222233333221     1    247899999876432     1


Q ss_pred             CCCHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcChhHHHHHHHHHHHHhccch----------hHHHHHHHhhcCCCC
Q 035560          247 YLTLDAVKAAIMEIFIGTTDTSKVTIAMAMTLLMKNPEAMKKAQEEVRSVVKDKG----------VLNAVIKETMRIQPA  316 (398)
Q Consensus       247 ~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~----------~l~a~i~E~lRl~p~  316 (398)
                      .++++++.+++.++++||+|||+++++|++++|++||++|+|+++||+++++.+.          .++|||+||||++|+
T Consensus       311 ~l~~~~i~~~~~~~~~AG~dTta~tl~~~l~~L~~~P~vq~kl~~Ei~~v~~~~~~~~~~l~~lpYl~avi~EtlRl~p~  390 (516)
T PLN02290        311 NLNLQLIMDECKTFFFAGHETTALLLTWTLMLLASNPTWQDKVRAEVAEVCGGETPSVDHLSKLTLLNMVINESLRLYPP  390 (516)
T ss_pred             CCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCCHHHHhcChHHHHHHHHHHHcCCC
Confidence            4789999999999999999999999999999999999999999999999987532          299999999999999


Q ss_pred             CCCCccccceeeeecceEeCCCceEeeC---------------CcccCCcccCCCCCCCCCCccccccCCCCCCCcchhh
Q 035560          317 TQFIPKATIESCVIDGYHTPAKTMVLVN---------------DKFIPERFVGSNIDMGGQNFEFIPFGSGRRICPGIHM  381 (398)
Q Consensus       317 ~~~~~r~~~~d~~l~g~~ip~g~~v~~~---------------~~f~PeRf~~~~~~~~~~~~~~~~Fg~G~r~C~G~~l  381 (398)
                      ++.++|.+.+|++++||.||+|+.|.++               ++|+||||++++   ......++|||.|+|.|+|++|
T Consensus       391 ~~~~~R~~~~d~~i~g~~IP~Gt~V~~~~~~~~rdp~~~~~dP~~F~PeRfl~~~---~~~~~~~~pFG~G~R~C~G~~l  467 (516)
T PLN02290        391 ATLLPRMAFEDIKLGDLHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRP---FAPGRHFIPFAAGPRNCIGQAF  467 (516)
T ss_pred             ccccceeecCCeeECCEEECCCCEEEecHHHhcCChhhhCCChhhcCccccCCCC---CCCCCeEecCCCCCCCCccHHH
Confidence            9988999999999999999999999998               789999999542   1234579999999999999999


Q ss_pred             hHHHHHHHHHHHhhhcC
Q 035560          382 AVPSVQLALANLLYKFD  398 (398)
Q Consensus       382 a~~~~~~~l~~ll~~fd  398 (398)
                      |++|++++++.++++||
T Consensus       468 A~~el~l~la~ll~~f~  484 (516)
T PLN02290        468 AMMEAKIILAMLISKFS  484 (516)
T ss_pred             HHHHHHHHHHHHHHhce
Confidence            99999999999999996


No 19 
>PLN02196 abscisic acid 8'-hydroxylase
Probab=100.00  E-value=1.9e-56  Score=411.42  Aligned_cols=343  Identities=20%  Similarity=0.265  Sum_probs=264.2

Q ss_pred             CCCCCCCCCCCC-----------cchHHHHHHHHHhhCCeEEEecCCccEEEecCHHHHHHHHHhcccccCCCCCcc---
Q 035560           29 SPHNWQPVPVRY-----------QKLAFYLWKISKQYGPVFSLRLGFRPAIIISSAKLAKEAFKTHDLQFAGRPVLL---   94 (398)
Q Consensus        29 ~~~~~ppgp~~~-----------~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~~~~~~~i~~~~~~~~~~~~~~~---   94 (398)
                      +..+.||||+++           ++++.++.+++++||++++++++++++|+++||+.+++++.++...|.......   
T Consensus        32 ~~~~~Ppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~~~~~~  111 (463)
T PLN02196         32 TKLPLPPGTMGWPYVGETFQLYSQDPNVFFASKQKRYGSVFKTHVLGCPCVMISSPEAAKFVLVTKSHLFKPTFPASKER  111 (463)
T ss_pred             CCCCCCCCCCCCCccchHHHHHhcCHHHHHHHHHHHhhhhheeeecCCceEEEcCHHHHHHHHhCCCCcccccCchHHHH
Confidence            456778887654           467788999999999999999999999999999999999986655453211000   


Q ss_pred             ------hh------hHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchHHHHHHHHHHH
Q 035560           95 ------GS------QIDMRKRFVTSLLNSNRIEQFRRVRKDKIFRMVEKISKLGDAADEDASSKAPINVSEIAMTCVRNI  162 (398)
Q Consensus        95 ------~~------~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vdl~~~~~~~~~~~  162 (398)
                            ..      ..++|+. +++.|+++.++.+.+.+.+.++++++.|.            ++++|+.+++..+++++
T Consensus       112 ~~g~~~l~~~~g~~w~~~Rk~-l~~~f~~~~l~~~~~~i~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~v  178 (463)
T PLN02196        112 MLGKQAIFFHQGDYHAKLRKL-VLRAFMPDAIRNMVPDIESIAQESLNSWE------------GTQINTYQEMKTYTFNV  178 (463)
T ss_pred             HcCcccccccCcHHHHHHHHH-HHHhcChHHHHHHHHHHHHHHHHHHHcCC------------CCeEEeHHHHHHHHHHH
Confidence                  00      0056666 78999999999999999999999988763            34689999999999999


Q ss_pred             HHHHHhcccccccchhHHhHHHHHHHHHhhhhcccccccccccc--hhhhccchhhHHHHHHHHHHhhh---CCCCChHH
Q 035560          163 IFRVTFRKRFEVDGTAAVNRMDFLLAETQLLSGTIFFSDCSYSF--IGNCLDGLTGMHRCLQKHFKDYA---GQQGDLID  237 (398)
Q Consensus       163 ~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  237 (398)
                      ++.++||.+....   . ..+.+...........+  +.. +|.  ..+.......+.+.+.+.+++++   .+..|+++
T Consensus       179 ~~~~~fG~~~~~~---~-~~~~~~~~~~~~~~~~~--~~~-~p~~~~~~~~~a~~~~~~~~~~~i~~~~~~~~~~~d~l~  251 (463)
T PLN02196        179 ALLSIFGKDEVLY---R-EDLKRCYYILEKGYNSM--PIN-LPGTLFHKSMKARKELAQILAKILSKRRQNGSSHNDLLG  251 (463)
T ss_pred             HHHHHcCCCCchH---H-HHHHHHHHHHhcchhcc--ccc-CCCccchHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHH
Confidence            9999999875421   1 22222222221111111  111 221  11112222333344444444433   24678999


Q ss_pred             HHHhhhhcCCCCHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcChhHHHHHHHHHHHHhccch--------------hH
Q 035560          238 DLLSLTKAGYLTLDAVKAAIMEIFIGTTDTSKVTIAMAMTLLMKNPEAMKKAQEEVRSVVKDKG--------------VL  303 (398)
Q Consensus       238 ~ll~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~--------------~l  303 (398)
                      .+++.  .++++++++.+++..+++||+|||+++++|++++|++||++|+++++||+++.+...              .+
T Consensus       252 ~ll~~--~~~l~~~ei~~~~~~~~~Ag~dTta~~l~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~~~~~~~~~~~l~yl  329 (463)
T PLN02196        252 SFMGD--KEGLTDEQIADNIIGVIFAARDTTASVLTWILKYLAENPSVLEAVTEEQMAIRKDKEEGESLTWEDTKKMPLT  329 (463)
T ss_pred             HHHhc--CCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccccCCCCCHHHHhcChHH
Confidence            98863  236899999999999999999999999999999999999999999999998875311              28


Q ss_pred             HHHHHHhhcCCCCCCCCccccceeeeecceEeCCCceEeeC--------------CcccCCcccCCCCCCCCCCcccccc
Q 035560          304 NAVIKETMRIQPATQFIPKATIESCVIDGYHTPAKTMVLVN--------------DKFIPERFVGSNIDMGGQNFEFIPF  369 (398)
Q Consensus       304 ~a~i~E~lRl~p~~~~~~r~~~~d~~l~g~~ip~g~~v~~~--------------~~f~PeRf~~~~~~~~~~~~~~~~F  369 (398)
                      +||++|+||++|+++...|.+.+|+.++||.||||+.|+++              ++|+||||++..     .+..++||
T Consensus       330 ~avi~EtlRl~p~~~~~~R~~~~d~~i~g~~IpkGt~v~~~~~~~~rd~~~~~dP~~F~PeRfl~~~-----~~~~~lpF  404 (463)
T PLN02196        330 SRVIQETLRVASILSFTFREAVEDVEYEGYLIPKGWKVLPLFRNIHHSADIFSDPGKFDPSRFEVAP-----KPNTFMPF  404 (463)
T ss_pred             HHHHHHHHhcCCCccccceeeccccccCCEEeCCCCEEEeeHHHhcCCchhcCCcCccChhhhcCCC-----CCCcccCc
Confidence            99999999999999977799999999999999999999998              899999998642     45789999


Q ss_pred             CCCCCCCcchhhhHHHHHHHHHHHhhhcC
Q 035560          370 GSGRRICPGIHMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       370 g~G~r~C~G~~la~~~~~~~l~~ll~~fd  398 (398)
                      |.|+|.|+|+++|++|++++++.++++||
T Consensus       405 G~G~r~C~G~~~A~~e~~~~la~ll~~f~  433 (463)
T PLN02196        405 GNGTHSCPGNELAKLEISVLIHHLTTKYR  433 (463)
T ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHhcE
Confidence            99999999999999999999999999996


No 20 
>PLN02738 carotene beta-ring hydroxylase
Probab=100.00  E-value=2e-56  Score=419.50  Aligned_cols=348  Identities=21%  Similarity=0.309  Sum_probs=262.3

Q ss_pred             cchHHHHHHHHHhhCCeEEEecCCccEEEecCHHHHHHHHHhcccccCCCCCcch--------------hhHHHHHHHHH
Q 035560           41 QKLAFYLWKISKQYGPVFSLRLGFRPAIIISSAKLAKEAFKTHDLQFAGRPVLLG--------------SQIDMRKRFVT  106 (398)
Q Consensus        41 ~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~~~~~~~i~~~~~~~~~~~~~~~~--------------~~~~~r~~~~~  106 (398)
                      +.++..++++++||||||++++|+.++++|+||+.++++|.++...|.+++....              ...+.||..+.
T Consensus       151 g~~~~~l~~lh~kYGpI~ri~lGp~~~vvIsDpe~i~eIl~~~~~~f~k~~~~~~~~~~~g~~l~~~dge~wr~rRr~l~  230 (633)
T PLN02738        151 EAFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGILAEILEFVMGKGLIPADGEIWRVRRRAIV  230 (633)
T ss_pred             chHHHHHHHHHHHhCCEEEEEeCCCCEEEECCHHHHHHHHhhCcccCCCcchHHHHhhccCCceecCCcHHHHHHHHhcc
Confidence            5567899999999999999999999999999999999999876555655432100              00044444489


Q ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchHHHHHHHHHHHHHHHHhcccccccchh--HHhHHH
Q 035560          107 SLLNSNRIEQFRRVRKDKIFRMVEKISKLGDAADEDASSKAPINVSEIAMTCVRNIIFRVTFRKRFEVDGTA--AVNRMD  184 (398)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~~~~~--~~~~~~  184 (398)
                      +.|+...++.+.+.+.+.++.+++.+.+...       +++++|+.+.+..+++|+++.++||.+++....+  ....+.
T Consensus       231 p~Fs~~~v~~l~~~i~~~v~~L~~~L~~~~~-------~g~~vdl~~~~~~lt~DVI~~~~FG~~~~~~~~~~~~~~~~~  303 (633)
T PLN02738        231 PALHQKYVAAMISLFGQASDRLCQKLDAAAS-------DGEDVEMESLFSRLTLDIIGKAVFNYDFDSLSNDTGIVEAVY  303 (633)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCcEeHHHHHHHHHHHHHHHHHhCCCccccccchHHHHHHH
Confidence            9999999999999999999999999987544       5778999999999999999999999998753222  112222


Q ss_pred             HHHHHHhhhhcccccccccccchhhhcc-------chhhHHHHHHHHHHh------hh----------CCCCChHHHHHh
Q 035560          185 FLLAETQLLSGTIFFSDCSYSFIGNCLD-------GLTGMHRCLQKHFKD------YA----------GQQGDLIDDLLS  241 (398)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~p~l~~~~~-------~~~~~~~~~~~~~~~------~~----------~~~~~~~~~ll~  241 (398)
                      ..+............... +|.+.....       ....+...+...++.      ++          ....++++.+++
T Consensus       304 ~~~~~~~~~~~~~~~~~~-~p~~~~l~~~~~~~~~~~~~l~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~dil~~Ll~  382 (633)
T PLN02738        304 TVLREAEDRSVSPIPVWE-IPIWKDISPRQRKVAEALKLINDTLDDLIAICKRMVEEEELQFHEEYMNERDPSILHFLLA  382 (633)
T ss_pred             HHHHHHHHHhhcchhhhh-hhHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhcccccccchHHHHHHH
Confidence            222222111111111111 222210100       001111111111111      00          123578888887


Q ss_pred             hhhcCCCCHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcChhHHHHHHHHHHHHhccch----------hHHHHHHHhh
Q 035560          242 LTKAGYLTLDAVKAAIMEIFIGTTDTSKVTIAMAMTLLMKNPEAMKKAQEEVRSVVKDKG----------VLNAVIKETM  311 (398)
Q Consensus       242 ~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~----------~l~a~i~E~l  311 (398)
                      ..  +.++++++.+++..+++||+|||+.+++|++++|++||++|+|||+||++++++..          .|+|||+|+|
T Consensus       383 ~~--~~ls~~~L~~e~~~ll~AG~eTTA~tLt~~l~~L~~~Pevq~kLreEl~~v~~~~~~t~edL~kLPYL~AVIkEtL  460 (633)
T PLN02738        383 SG--DDVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSKEPSVVAKLQEEVDSVLGDRFPTIEDMKKLKYTTRVINESL  460 (633)
T ss_pred             cC--CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCCCCHHHHccCHHHHHHHHHHH
Confidence            53  25899999999999999999999999999999999999999999999999987432          1899999999


Q ss_pred             cCCCCCCCCccccceeeeecceEeCCCceEeeC--------------CcccCCcccCCCC--CCCCCCccccccCCCCCC
Q 035560          312 RIQPATQFIPKATIESCVIDGYHTPAKTMVLVN--------------DKFIPERFVGSNI--DMGGQNFEFIPFGSGRRI  375 (398)
Q Consensus       312 Rl~p~~~~~~r~~~~d~~l~g~~ip~g~~v~~~--------------~~f~PeRf~~~~~--~~~~~~~~~~~Fg~G~r~  375 (398)
                      |++|++|..+|++.+|++++||.||+||.|.++              ++|+||||+....  +.......++|||.|+|.
T Consensus       461 RL~p~~p~~~R~a~~d~~i~gy~IPkGT~V~~s~~~ihrdp~ifpdP~~F~PERWl~~~~~~~~~~~~~~~vpFG~G~R~  540 (633)
T PLN02738        461 RLYPQPPVLIRRSLENDMLGGYPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNFSYLPFGGGPRK  540 (633)
T ss_pred             hcCCCccccceeeccCceECCEEECCCCEEEecHHHHhCCccccCCccccCcccCCCCCCCccccCCCCceeCCCCCCCC
Confidence            999999977799999999999999999999998              8999999985321  122346789999999999


Q ss_pred             CcchhhhHHHHHHHHHHHhhhcC
Q 035560          376 CPGIHMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       376 C~G~~la~~~~~~~l~~ll~~fd  398 (398)
                      |+|++||++|+++++|.|+++||
T Consensus       541 CiG~~lA~~El~l~LA~Llr~F~  563 (633)
T PLN02738        541 CVGDMFASFENVVATAMLVRRFD  563 (633)
T ss_pred             CcCHHHHHHHHHHHHHHHHHhCe
Confidence            99999999999999999999996


No 21 
>PLN02655 ent-kaurene oxidase
Probab=100.00  E-value=6.9e-56  Score=408.32  Aligned_cols=348  Identities=24%  Similarity=0.384  Sum_probs=266.8

Q ss_pred             cchHHHHHHHHHhhCCeEEEecCCccEEEecCHHHHHHHHHhcccccCCCCCcchhh---------------H---HHHH
Q 035560           41 QKLAFYLWKISKQYGPVFSLRLGFRPAIIISSAKLAKEAFKTHDLQFAGRPVLLGSQ---------------I---DMRK  102 (398)
Q Consensus        41 ~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~~~~~~~i~~~~~~~~~~~~~~~~~~---------------~---~~r~  102 (398)
                      .+++..+.+++++||++|++++++.++++|+||+.+++++.++...|+.++......               .   ++||
T Consensus        19 ~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~~~~f~~r~~~~~~~~~~~~~~~~~~~~~g~~wr~~Rr   98 (466)
T PLN02655         19 KKPHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTKFSSISTRKLSKALTVLTRDKSMVATSDYGDFHKMVKR   98 (466)
T ss_pred             CchhHHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhcCchhcCCChhhHHHHHhcCCCceeeCCCcHHHHHHHH
Confidence            347889999999999999999999999999999999999988777776554221110               1   5677


Q ss_pred             HHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchHHHHHHHHHHHHHHHHhcccccccchhH---
Q 035560          103 RFVTSLLNSNRIEQFRRVRKDKIFRMVEKISKLGDAADEDASSKAPINVSEIAMTCVRNIIFRVTFRKRFEVDGTAA---  179 (398)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~~~~~~---  179 (398)
                      .+..+.|+...++.+.+.+.+.++.+++.+.+...+     ..++++|+.+.+..+++++++.++||.+++..+.+.   
T Consensus        99 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~vd~~~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~  173 (466)
T PLN02655         99 YVMNNLLGANAQKRFRDTRDMLIENMLSGLHALVKD-----DPHSPVNFRDVFENELFGLSLIQALGEDVESVYVEELGT  173 (466)
T ss_pred             HHHHHhcCchHHHHhHHHHHHHHHHHHHHHHhhccc-----cCCCceeHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence            767788888888889999999989888888654321     035679999999999999999999999876532111   


Q ss_pred             ----HhHHHHHHHHHhhhhcccccccccccchhhhccc------hhh----HHHHHHHHHHhhh------CCCCChHHHH
Q 035560          180 ----VNRMDFLLAETQLLSGTIFFSDCSYSFIGNCLDG------LTG----MHRCLQKHFKDYA------GQQGDLIDDL  239 (398)
Q Consensus       180 ----~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~------~~~----~~~~~~~~~~~~~------~~~~~~~~~l  239 (398)
                          ...+...+..+............ +|.++ ++..      ...    ..+.+.+.+++++      .+..|+++.+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~l~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~l~~l  251 (466)
T PLN02655        174 EISKEEIFDVLVHDMMMCAIEVDWRDF-FPYLS-WIPNKSFETRVQTTEFRRTAVMKALIKQQKKRIARGEERDCYLDFL  251 (466)
T ss_pred             chhhHHHHHHHHHHHHHHhCCcchhhh-hhhhh-hcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH
Confidence                01222233333332222222233 55443 2211      000    1112222222211      2246899999


Q ss_pred             HhhhhcCCCCHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcChhHHHHHHHHHHHHhccch----------hHHHHHHH
Q 035560          240 LSLTKAGYLTLDAVKAAIMEIFIGTTDTSKVTIAMAMTLLMKNPEAMKKAQEEVRSVVKDKG----------VLNAVIKE  309 (398)
Q Consensus       240 l~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~----------~l~a~i~E  309 (398)
                      ++...  .++++++.+++.++++||+|||+++++|++++|++||++|+++++||+.+.+...          .++||++|
T Consensus       252 l~~~~--~ls~~~i~~~~~~~~~ag~dtta~~l~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~l~~l~yl~a~i~E  329 (466)
T PLN02655        252 LSEAT--HLTDEQLMMLVWEPIIEAADTTLVTTEWAMYELAKNPDKQERLYREIREVCGDERVTEEDLPNLPYLNAVFHE  329 (466)
T ss_pred             HhccC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCCCCCHHHHhcChHHHHHHHH
Confidence            97753  5899999999999999999999999999999999999999999999999987532          28999999


Q ss_pred             hhcCCCCCC-CCccccceeeeecceEeCCCceEeeC--------------CcccCCcccCCCCCCCCCCccccccCCCCC
Q 035560          310 TMRIQPATQ-FIPKATIESCVIDGYHTPAKTMVLVN--------------DKFIPERFVGSNIDMGGQNFEFIPFGSGRR  374 (398)
Q Consensus       310 ~lRl~p~~~-~~~r~~~~d~~l~g~~ip~g~~v~~~--------------~~f~PeRf~~~~~~~~~~~~~~~~Fg~G~r  374 (398)
                      |||++|+++ ..+|.+.+|++++||.||||+.|.++              ++|+||||++++.. ......++|||+|+|
T Consensus       330 tlRl~p~~~~~~~r~~~~d~~~~g~~ip~gt~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~~~-~~~~~~~~~Fg~G~r  408 (466)
T PLN02655        330 TLRKYSPVPLLPPRFVHEDTTLGGYDIPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYE-SADMYKTMAFGAGKR  408 (466)
T ss_pred             HhccCCCcCCCCCcccCCCcccCCEEECCCCEEEecHHHhcCCcccCCChhccCccccCCCCcc-cCCcccccCCCCCCC
Confidence            999999999 55799999999999999999999998              89999999976422 123578999999999


Q ss_pred             CCcchhhhHHHHHHHHHHHhhhcC
Q 035560          375 ICPGIHMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       375 ~C~G~~la~~~~~~~l~~ll~~fd  398 (398)
                      .|+|++||+.|++++++.++++||
T Consensus       409 ~C~G~~~A~~~~~~~l~~ll~~f~  432 (466)
T PLN02655        409 VCAGSLQAMLIACMAIARLVQEFE  432 (466)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHeE
Confidence            999999999999999999999986


No 22 
>PLN03018 homomethionine N-hydroxylase
Probab=100.00  E-value=4.3e-55  Score=406.22  Aligned_cols=386  Identities=22%  Similarity=0.322  Sum_probs=272.6

Q ss_pred             HHHHHHHHHHHHHHhhcccccCC-CCCCCCCCCCCCCC---cchH---------HHHHHHHHhh-CCeEEEecCCccEEE
Q 035560            4 LVLAILFCLPIFLLYKCQISTWP-SSSPHNWQPVPVRY---QKLA---------FYLWKISKQY-GPVFSLRLGFRPAII   69 (398)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ppgp~~~---~~~~---------~~~~~~~~ky-G~v~~~~~~~~~~vv   69 (398)
                      ++..++++..+.++-+...+... +++..+.||||+++   ++.+         .++++..++| |+||++++|+.++|+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PPgp~~~P~iGnl~~l~~~~~~~~~~~~~~~~~~g~i~~~~lg~~~~vv   90 (534)
T PLN03018         11 LLGFIVFIASITLLGRILSRPSKTKDRSRQLPPGPPGWPILGNLPELIMTRPRSKYFHLAMKELKTDIACFNFAGTHTIT   90 (534)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCcCCCCCCeeccHHHhccCCCcchhHHHHHHHhCCCeEEEEeCCccEEE
Confidence            33444444444444444443333 33455679999876   3322         2456667776 799999999999999


Q ss_pred             ecCHHHHHHHHHhcccccCCCCCcchh------------------hHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHH
Q 035560           70 ISSAKLAKEAFKTHDLQFAGRPVLLGS------------------QIDMRKRFVTSLL-NSNRIEQFRRVRKDKIFRMVE  130 (398)
Q Consensus        70 v~~~~~~~~i~~~~~~~~~~~~~~~~~------------------~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~  130 (398)
                      |+||+.+++++.+++..|++++.....                  ..++|+. +++.| +....+.+.+..+.+++.+++
T Consensus        91 vsdpe~ikevl~~~~~~f~~rp~~~~~~~l~~~~~~i~~~~~G~~Wk~~Rk~-l~~~~~~~~~~~~~~~~~~~~~~~l~~  169 (534)
T PLN03018         91 INSDEIAREAFRERDADLADRPQLSIMETIGDNYKSMGTSPYGEQFMKMKKV-ITTEIMSVKTLNMLEAARTIEADNLIA  169 (534)
T ss_pred             ECCHHHHHHHHHhCcHhhcCCCCchhhhhhccCCCceEecCCCHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998777767776532111                  0166777 66665 444445556666677889999


Q ss_pred             HHHhhcccccccccCCCCcchHHHHHHHHHHHHHHHHhcccccccc------hhHHhHHHHHHHHHhhhhc---cccccc
Q 035560          131 KISKLGDAADEDASSKAPINVSEIAMTCVRNIIFRVTFRKRFEVDG------TAAVNRMDFLLAETQLLSG---TIFFSD  201 (398)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~~~------~~~~~~~~~~~~~~~~~~~---~~~~~~  201 (398)
                      .+.....       .+.++|+.+.+..++++++++++||.+++..+      ......+............   .....+
T Consensus       170 ~l~~~~~-------~~~~vd~~~~~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (534)
T PLN03018        170 YIHSMYQ-------RSETVDVRELSRVYGYAVTMRMLFGRRHVTKENVFSDDGRLGKAEKHHLEVIFNTLNCLPGFSPVD  242 (534)
T ss_pred             HHHHhcc-------cCCceeHHHHHHHHHHHHHHHHHhCCccccccccccccccchhHHHHHHHHHHHHHHHhCCCcHHH
Confidence            9875432       45679999999999999999999999875321      1110112212222111111   111112


Q ss_pred             cccc-chhhhc-cc----hh----hHHHHHHHHHHhhh-------C--CCCChHHHHHhhhhcC---CCCHHHHHHHHHH
Q 035560          202 CSYS-FIGNCL-DG----LT----GMHRCLQKHFKDYA-------G--QQGDLIDDLLSLTKAG---YLTLDAVKAAIME  259 (398)
Q Consensus       202 ~~~p-~l~~~~-~~----~~----~~~~~~~~~~~~~~-------~--~~~~~~~~ll~~~~~~---~l~~~~i~~~~~~  259 (398)
                      . +| |+..+. ..    ..    ...+.+.+.+++++       +  ...|+++.+++..+++   .++++++.+.+.+
T Consensus       243 ~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~ls~~~i~~~~~~  321 (534)
T PLN03018        243 Y-VERWLRGWNIDGQEERAKVNVNLVRSYNNPIIDERVELWREKGGKAAVEDWLDTFITLKDQNGKYLVTPDEIKAQCVE  321 (534)
T ss_pred             H-hhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcccHHHHHHHhhcccCCCCCCHHHHHHHHHH
Confidence            2 33 333110 00    00    11122222232221       1  2368999999765432   3899999999999


Q ss_pred             HhhhcccchHHHHHHHHHHHhcChhHHHHHHHHHHHHhccch-----------hHHHHHHHhhcCCCCCCC-Ccccccee
Q 035560          260 IFIGTTDTSKVTIAMAMTLLMKNPEAMKKAQEEVRSVVKDKG-----------VLNAVIKETMRIQPATQF-IPKATIES  327 (398)
Q Consensus       260 ~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~-----------~l~a~i~E~lRl~p~~~~-~~r~~~~d  327 (398)
                      +++||+|||+++++|++++|+.||++|+++++||+++++...           .++||++|+||++|++|. .+|.+.+|
T Consensus       322 ~~~aG~dTta~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~~~~~~~~~lpyl~a~i~EtlRl~p~~~~~~~r~~~~d  401 (534)
T PLN03018        322 FCIAAIDNPANNMEWTLGEMLKNPEILRKALKELDEVVGKDRLVQESDIPNLNYLKACCRETFRIHPSAHYVPPHVARQD  401 (534)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCCCCCCHHHhcCCHHHHHHHHHHHhcCCCccccCCcccCCC
Confidence            999999999999999999999999999999999999986432           299999999999999994 47999999


Q ss_pred             eeecceEeCCCceEeeC--------------CcccCCcccCCCCCC-----CCCCccccccCCCCCCCcchhhhHHHHHH
Q 035560          328 CVIDGYHTPAKTMVLVN--------------DKFIPERFVGSNIDM-----GGQNFEFIPFGSGRRICPGIHMAVPSVQL  388 (398)
Q Consensus       328 ~~l~g~~ip~g~~v~~~--------------~~f~PeRf~~~~~~~-----~~~~~~~~~Fg~G~r~C~G~~la~~~~~~  388 (398)
                      ++++||.||||+.|.++              ++|+||||++++...     ...+..++|||.|+|.|+|++||.+|+++
T Consensus       402 ~~i~G~~IpkGt~V~~~~~~~~~dp~~~~~p~~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~lA~~e~~~  481 (534)
T PLN03018        402 TTLGGYFIPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIMMVM  481 (534)
T ss_pred             eeECCEEECCCCEEEEChHHhcCCcccCCCccccCCccCCCCCCccccccccCCCCCccCCCCCCCCCccHHHHHHHHHH
Confidence            99999999999999998              799999999754221     12456899999999999999999999999


Q ss_pred             HHHHHhhhcC
Q 035560          389 ALANLLYKFD  398 (398)
Q Consensus       389 ~l~~ll~~fd  398 (398)
                      ++++++++||
T Consensus       482 ~la~ll~~f~  491 (534)
T PLN03018        482 MLARFLQGFN  491 (534)
T ss_pred             HHHHHHHhce
Confidence            9999999996


No 23 
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=100.00  E-value=3.5e-55  Score=402.46  Aligned_cols=347  Identities=18%  Similarity=0.243  Sum_probs=260.1

Q ss_pred             CCCCCCCCCCCCC---c------------chHHHHHHHHHhhCCeEEEecCCccEEEecCHHHHHHHHHhcccccCCCCC
Q 035560           28 SSPHNWQPVPVRY---Q------------KLAFYLWKISKQYGPVFSLRLGFRPAIIISSAKLAKEAFKTHDLQFAGRPV   92 (398)
Q Consensus        28 ~~~~~~ppgp~~~---~------------~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~~~~~~~i~~~~~~~~~~~~~   92 (398)
                      +++.+.||||+++   +            +++.++.++.++||+||++++|+.+.++++||+++++++.+++..|..+..
T Consensus         3 ~~~~~~Ppg~~~~P~iG~~~~l~~~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~~~~~~~~~   82 (452)
T PLN03141          3 KKKSRLPKGSLGWPVIGETLDFISCAYSSRPESFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDGNAFVPAYP   82 (452)
T ss_pred             CCCCCCCCCCCCCCchhhHHHHHhhcccCChHHHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCCCeeeccCc
Confidence            3566678898876   1            356788999999999999999999999999999999999877665654321


Q ss_pred             cch---h------------hHHHHHHHHHhhcchhHHHH-HHHHHHHHHHHHHHHHHhhcccccccccCCCCcchHHHHH
Q 035560           93 LLG---S------------QIDMRKRFVTSLLNSNRIEQ-FRRVRKDKIFRMVEKISKLGDAADEDASSKAPINVSEIAM  156 (398)
Q Consensus        93 ~~~---~------------~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vdl~~~~~  156 (398)
                      ...   .            ..+.|+. +.+.|+...+.. ..+.+.+.++++++.+.           ++..+|+.+.+.
T Consensus        83 ~~~~~l~g~~~~~~~~g~~wr~~r~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~  150 (452)
T PLN03141         83 KSLTELMGKSSILLINGSLQRRVHGL-IGAFLKSPHLKAQITRDMERYVSESLDSWR-----------DDPPVLVQDETK  150 (452)
T ss_pred             hhHHHHhCcccccccCcHHHHHHHHH-HHHhcCcHHHHHHHHHHHHHHHHHHHHhcc-----------CCCCEEhHHHHH
Confidence            000   0            0044544 678888777665 34555555555555442           456799999999


Q ss_pred             HHHHHHHHHHHhcccccccchhHHhHHHHHHHHHhhhhcccccccccccchh--hhccchhhHHHHHHHHHHhhh-----
Q 035560          157 TCVRNIIFRVTFRKRFEVDGTAAVNRMDFLLAETQLLSGTIFFSDCSYSFIG--NCLDGLTGMHRCLQKHFKDYA-----  229 (398)
Q Consensus       157 ~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~--~~~~~~~~~~~~~~~~~~~~~-----  229 (398)
                      .++++++++++||.+.+.   +. .++...+..+......  .+.. +|...  +.......+.+.+.+.+++++     
T Consensus       151 ~~~~~vi~~~~~G~~~~~---~~-~~~~~~~~~~~~~~~~--~~~~-~p~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~  223 (452)
T PLN03141        151 KIAFEVLVKALISLEPGE---EM-EFLKKEFQEFIKGLMS--LPIK-LPGTRLYRSLQAKKRMVKLVKKIIEEKRRAMKN  223 (452)
T ss_pred             HHHHHHHHHHHcCCCchH---HH-HHHHHHHHHHhhhHHh--CccC-CCchHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999987642   22 3333333333322211  1122 34322  111222233333344443322     


Q ss_pred             C------CCCChHHHHHhhhhcCCCCHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcChhHHHHHHHHHHHHhcc----
Q 035560          230 G------QQGDLIDDLLSLTKAGYLTLDAVKAAIMEIFIGTTDTSKVTIAMAMTLLMKNPEAMKKAQEEVRSVVKD----  299 (398)
Q Consensus       230 ~------~~~~~~~~ll~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~----  299 (398)
                      +      ...|+++.+++... +.++++++.+++..+++||+|||+++++|++++|++||++|+++++||+++.+.    
T Consensus       224 ~~~~~~~~~~d~l~~ll~~~~-~~l~~~~i~~~~~~ll~Ag~dTts~tl~~~~~~L~~~P~v~~kl~~Ei~~~~~~~~~~  302 (452)
T PLN03141        224 KEEDETGIPKDVVDVLLRDGS-DELTDDLISDNMIDMMIPGEDSVPVLMTLAVKFLSDCPVALQQLTEENMKLKRLKADT  302 (452)
T ss_pred             cCccccCChhhHHHHHHhcCC-CCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHhccCCC
Confidence            1      13589999887653 368999999999999999999999999999999999999999999999887531    


Q ss_pred             c-----------hhHHHHHHHhhcCCCCCCCCccccceeeeecceEeCCCceEeeC--------------CcccCCcccC
Q 035560          300 K-----------GVLNAVIKETMRIQPATQFIPKATIESCVIDGYHTPAKTMVLVN--------------DKFIPERFVG  354 (398)
Q Consensus       300 ~-----------~~l~a~i~E~lRl~p~~~~~~r~~~~d~~l~g~~ip~g~~v~~~--------------~~f~PeRf~~  354 (398)
                      .           +.++|||+|++|++|+++.++|.+.+|++++||.||||+.|.++              ++|+||||++
T Consensus       303 ~~~~~~~~~~~lpyl~avi~E~lRl~p~~~~~~R~~~~d~~l~g~~IPkG~~V~~~~~~~~~d~~~~~dP~~F~PeRfl~  382 (452)
T PLN03141        303 GEPLYWTDYMSLPFTQNVITETLRMGNIINGVMRKAMKDVEIKGYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPWRWQE  382 (452)
T ss_pred             CCCCCHHHHhccHHHHHHHHHHHhccCCcCCcceeecCCeeECCEEECCCCEEEEehHhccCCchhcCCccccCcccccC
Confidence            1           12999999999999999988999999999999999999999998              8999999997


Q ss_pred             CCCCCCCCCccccccCCCCCCCcchhhhHHHHHHHHHHHhhhcC
Q 035560          355 SNIDMGGQNFEFIPFGSGRRICPGIHMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       355 ~~~~~~~~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~fd  398 (398)
                      ++    ..+..|+|||+|+|.|+|++||.+|+++++|.++++||
T Consensus       383 ~~----~~~~~~~pFG~G~R~C~G~~lA~~el~~~la~ll~~f~  422 (452)
T PLN03141        383 KD----MNNSSFTPFGGGQRLCPGLDLARLEASIFLHHLVTRFR  422 (452)
T ss_pred             CC----CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCe
Confidence            53    23568999999999999999999999999999999996


No 24 
>PLN02302 ent-kaurenoic acid oxidase
Probab=100.00  E-value=7.7e-55  Score=405.89  Aligned_cols=348  Identities=16%  Similarity=0.247  Sum_probs=266.2

Q ss_pred             CCCCCCCCCCCCCC---------------cchHHHHHHHHHhhCC--eEEEecCCccEEEecCHHHHHHHHHhcccccCC
Q 035560           27 SSSPHNWQPVPVRY---------------QKLAFYLWKISKQYGP--VFSLRLGFRPAIIISSAKLAKEAFKTHDLQFAG   89 (398)
Q Consensus        27 ~~~~~~~ppgp~~~---------------~~~~~~~~~~~~kyG~--v~~~~~~~~~~vvv~~~~~~~~i~~~~~~~~~~   89 (398)
                      ...+.++||||+++               .+++.++.++++|||+  +|++++++.+.++++||+.+++++.++ ..|..
T Consensus        37 ~~~~~~lpPgp~~~PilG~l~~~~~~~~~~~~~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~-~~f~~  115 (490)
T PLN02302         37 GEGQPPLPPGDLGWPVIGNMWSFLRAFKSSNPDSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDD-DAFEP  115 (490)
T ss_pred             ccCCCCCcCCCCCCCccccHHHHHHhcccCCcHHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCC-Ccccc
Confidence            44666789999876               2467789999999997  799999999999999999999999865 33432


Q ss_pred             CCCcch--------------h-hHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchHH
Q 035560           90 RPVLLG--------------S-QIDMRKRFVTSLL-NSNRIEQFRRVRKDKIFRMVEKISKLGDAADEDASSKAPINVSE  153 (398)
Q Consensus        90 ~~~~~~--------------~-~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vdl~~  153 (398)
                      +.....              . ..++|+. +.+.| +++.++.+.+.+.+.++++++.+.           +++.+|+.+
T Consensus       116 ~~~~~~~~~~g~~~~~~~~g~~w~~~R~~-~~~~f~~~~~l~~~~~~i~~~v~~~~~~~~-----------~~~~v~~~~  183 (490)
T PLN02302        116 GWPESTVELIGRKSFVGITGEEHKRLRRL-TAAPVNGPEALSTYIPYIEENVKSCLEKWS-----------KMGEIEFLT  183 (490)
T ss_pred             CCchhHHHHhccccccccCcHHHHHHHHH-HHhccCCHHHHHHHHHHHHHHHHHHHHHhc-----------CCCCEehHH
Confidence            211100              0 0066777 77888 467899999999999999999885           334699999


Q ss_pred             HHHHHHHHHHHHHHhcccccccchhHHhHHHHHHHHHhhhhcccccccccccchh--hhccchhhHHHHHHHHHHhhh--
Q 035560          154 IAMTCVRNIIFRVTFRKRFEVDGTAAVNRMDFLLAETQLLSGTIFFSDCSYSFIG--NCLDGLTGMHRCLQKHFKDYA--  229 (398)
Q Consensus       154 ~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~--~~~~~~~~~~~~~~~~~~~~~--  229 (398)
                      .+..++++++++++||.+.+..   . .++...+..........  ... +|...  ...+......+.+.+.+++++  
T Consensus       184 ~~~~~~~~vi~~~~~G~~~~~~---~-~~~~~~~~~~~~~~~~~--~~~-~p~~~~~~~~~~~~~l~~~~~~~i~~~~~~  256 (490)
T PLN02302        184 ELRKLTFKIIMYIFLSSESELV---M-EALEREYTTLNYGVRAM--AIN-LPGFAYHRALKARKKLVALFQSIVDERRNS  256 (490)
T ss_pred             HHHHHHHHHHHHHHcCCCChHH---H-HHHHHHHHHHHHHhhhC--CcC-CCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999876531   1 22222222221111111  111 33321  111111223333333333322  


Q ss_pred             ------CCCCChHHHHHhhhhcC--CCCHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcChhHHHHHHHHHHHHhccch
Q 035560          230 ------GQQGDLIDDLLSLTKAG--YLTLDAVKAAIMEIFIGTTDTSKVTIAMAMTLLMKNPEAMKKAQEEVRSVVKDKG  301 (398)
Q Consensus       230 ------~~~~~~~~~ll~~~~~~--~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~  301 (398)
                            .+..|+++.+++..+++  .++++++.+++..+++||+|||+++++|++++|++||++|+|+++|++++.+...
T Consensus       257 ~~~~~~~~~~d~l~~ll~~~~~~~~~~~~~~i~~~~~~~~~Ag~dtta~~l~~~l~~L~~~P~~~~kl~~E~~~v~~~~~  336 (490)
T PLN02302        257 RKQNISPRKKDMLDLLLDAEDENGRKLDDEEIIDLLLMYLNAGHESSGHLTMWATIFLQEHPEVLQKAKAEQEEIAKKRP  336 (490)
T ss_pred             hhccCCCCcCCHHHHHHhhhccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCC
Confidence                  13579999999875432  5899999999999999999999999999999999999999999999999875321


Q ss_pred             ---------------hHHHHHHHhhcCCCCCCCCccccceeeeecceEeCCCceEeeC--------------CcccCCcc
Q 035560          302 ---------------VLNAVIKETMRIQPATQFIPKATIESCVIDGYHTPAKTMVLVN--------------DKFIPERF  352 (398)
Q Consensus       302 ---------------~l~a~i~E~lRl~p~~~~~~r~~~~d~~l~g~~ip~g~~v~~~--------------~~f~PeRf  352 (398)
                                     .++|||+|++|++|++|..+|.+.+|++++||.||||+.|.++              ++|+||||
T Consensus       337 ~~~~~~~~~~l~~lpyl~a~i~E~lRl~p~~~~~~R~~~~d~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeR~  416 (490)
T PLN02302        337 PGQKGLTLKDVRKMEYLSQVIDETLRLINISLTVFREAKTDVEVNGYTIPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRW  416 (490)
T ss_pred             CCCCCCCHHHHhcChHHHHHHHHHHHhCCCcccchhcccCCEeECCEEECCCCEEEeeHHHhcCCcccCCCccccChhhc
Confidence                           2899999999999999977899999999999999999999998              89999999


Q ss_pred             cCCCCCCCCCCccccccCCCCCCCcchhhhHHHHHHHHHHHhhhcC
Q 035560          353 VGSNIDMGGQNFEFIPFGSGRRICPGIHMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       353 ~~~~~~~~~~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~fd  398 (398)
                      ++..    ..+..++|||.|+|.|+|++||.+|++++++.++++||
T Consensus       417 ~~~~----~~~~~~~pFG~G~r~C~G~~lA~~e~~~~la~ll~~f~  458 (490)
T PLN02302        417 DNYT----PKAGTFLPFGLGSRLCPGNDLAKLEISIFLHHFLLGYR  458 (490)
T ss_pred             CCCC----CCCCCccCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCe
Confidence            8653    24668999999999999999999999999999999996


No 25 
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=100.00  E-value=3.2e-54  Score=402.65  Aligned_cols=342  Identities=20%  Similarity=0.302  Sum_probs=248.0

Q ss_pred             HHHHHHhh---CCeEEEecCCccEEEecCHHHHHHHHHhcccccCCCCCcch----------------hhHHHHHHHHHh
Q 035560           47 LWKISKQY---GPVFSLRLGFRPAIIISSAKLAKEAFKTHDLQFAGRPVLLG----------------SQIDMRKRFVTS  107 (398)
Q Consensus        47 ~~~~~~ky---G~v~~~~~~~~~~vvv~~~~~~~~i~~~~~~~~~~~~~~~~----------------~~~~~r~~~~~~  107 (398)
                      +.++.++|   |++|++++++.+.++++||+.+++++.++...|...+....                ...++|+. +++
T Consensus        54 ~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~g~~l~~~~g~~w~~~Rr~-l~~  132 (516)
T PLN03195         54 MHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVEHVLKTNFANYPKGEVYHSYMEVLLGDGIFNVDGELWRKQRKT-ASF  132 (516)
T ss_pred             HHHHHHHHhccCCcEEEeeCCCCceEecCHHHHHHHHhhCccccCCcHhHHHHHHHHhcCeeeccCcHHHHHHHHh-cch
Confidence            55677777   89999999999999999999999999865444443322110                00055665 799


Q ss_pred             hcchhHHHHHHHHH-HHHHHHHHHHHHhhcccccccccCCCCcchHHHHHHHHHHHHHHHHhcccccccchhH-HhHHHH
Q 035560          108 LLNSNRIEQFRRVR-KDKIFRMVEKISKLGDAADEDASSKAPINVSEIAMTCVRNIIFRVTFRKRFEVDGTAA-VNRMDF  185 (398)
Q Consensus       108 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~~~~~~-~~~~~~  185 (398)
                      .|+.+.++.+.+.+ .+.++.+++.+.+...       .+.++|+.+++..+++++++.++||.+++..+.+. ...+.+
T Consensus       133 ~fs~~~l~~~~~~~~~~~~~~l~~~l~~~~~-------~~~~vd~~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~~~  205 (516)
T PLN03195        133 EFASKNLRDFSTVVFREYSLKLSSILSQASF-------ANQVVDMQDLFMRMTLDSICKVGFGVEIGTLSPSLPENPFAQ  205 (516)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCeEcHHHHHHHHHHHHHHHHHhCCCccccccCCCccHHHH
Confidence            99999999998876 5556777777764322       45679999999999999999999999887543211 022333


Q ss_pred             HHHHHhhhhcccccccccccchhhhc---------cchhhHHHHHHHHHHhhh-----------CCCCChHHHHHhhhhc
Q 035560          186 LLAETQLLSGTIFFSDCSYSFIGNCL---------DGLTGMHRCLQKHFKDYA-----------GQQGDLIDDLLSLTKA  245 (398)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~p~l~~~~---------~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ll~~~~~  245 (398)
                      .+........... ... ++.+..+.         .......+.+.+.+++++           ....|+++.+++..++
T Consensus       206 ~~~~~~~~~~~~~-~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~  283 (516)
T PLN03195        206 AFDTANIIVTLRF-IDP-LWKLKKFLNIGSEALLSKSIKVVDDFTYSVIRRRKAEMDEARKSGKKVKHDILSRFIELGED  283 (516)
T ss_pred             HHHHHHHHHHHHH-hcc-hhhHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHhccCC
Confidence            3332221110000 000 11111010         011112222222332211           1246899999976543


Q ss_pred             --CCCCHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcChhHHHHHHHHHHHHhccc-----------------------
Q 035560          246 --GYLTLDAVKAAIMEIFIGTTDTSKVTIAMAMTLLMKNPEAMKKAQEEVRSVVKDK-----------------------  300 (398)
Q Consensus       246 --~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~-----------------------  300 (398)
                        +.++++++.+++.++++||+|||+++++|++++|++||++|+|+++||+++.+..                       
T Consensus       284 ~~~~l~~~~i~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (516)
T PLN03195        284 PDSNFTDKSLRDIVLNFVIAGRDTTATTLSWFVYMIMMNPHVAEKLYSELKALEKERAKEEDPEDSQSFNQRVTQFAGLL  363 (516)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhcccccccccccchhhhhcccccCCC
Confidence              3589999999999999999999999999999999999999999999999876321                       


Q ss_pred             --------hhHHHHHHHhhcCCCCCCCCccccceeeee-cceEeCCCceEeeC---------------CcccCCcccCCC
Q 035560          301 --------GVLNAVIKETMRIQPATQFIPKATIESCVI-DGYHTPAKTMVLVN---------------DKFIPERFVGSN  356 (398)
Q Consensus       301 --------~~l~a~i~E~lRl~p~~~~~~r~~~~d~~l-~g~~ip~g~~v~~~---------------~~f~PeRf~~~~  356 (398)
                              +.++|||+||||++|++|..+|.+.+|.++ +|+.||||+.|.++               ++|+||||++++
T Consensus       364 ~~~~l~~Lpyl~Avi~EtLRl~p~~p~~~r~~~~d~~~~~G~~IpkGt~V~~~~~~~h~dp~~~g~dP~~F~PeRwl~~~  443 (516)
T PLN03195        364 TYDSLGKLQYLHAVITETLRLYPAVPQDPKGILEDDVLPDGTKVKAGGMVTYVPYSMGRMEYNWGPDAASFKPERWIKDG  443 (516)
T ss_pred             CHHHHhcCHHHHHHHHHHhhcCCCCcchhhhhccCcCcCCCcEECCCCEEEEehHhhccChhhhccChhhcCCcccCCCC
Confidence                    129999999999999999777888887666 89999999999987               689999999643


Q ss_pred             CCCCCCCccccccCCCCCCCcchhhhHHHHHHHHHHHhhhcC
Q 035560          357 IDMGGQNFEFIPFGSGRRICPGIHMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       357 ~~~~~~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~fd  398 (398)
                      ......+..|+|||+|+|.|+|++||++|++++++.++++||
T Consensus       444 ~~~~~~~~~~~pFG~G~R~CiG~~lA~~e~~~~la~ll~~f~  485 (516)
T PLN03195        444 VFQNASPFKFTAFQAGPRICLGKDSAYLQMKMALALLCRFFK  485 (516)
T ss_pred             CcCCCCCceEeccCCCCCcCcCHHHHHHHHHHHHHHHHHhce
Confidence            211234568999999999999999999999999999999996


No 26 
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=100.00  E-value=1.7e-53  Score=394.03  Aligned_cols=342  Identities=16%  Similarity=0.217  Sum_probs=246.9

Q ss_pred             HHHHHHHHhhCCeEE---EecCCccEEEecCHHHHHHHHHhcccccCCCCCcchhh----H-----------HHHHHHHH
Q 035560           45 FYLWKISKQYGPVFS---LRLGFRPAIIISSAKLAKEAFKTHDLQFAGRPVLLGSQ----I-----------DMRKRFVT  106 (398)
Q Consensus        45 ~~~~~~~~kyG~v~~---~~~~~~~~vvv~~~~~~~~i~~~~~~~~~~~~~~~~~~----~-----------~~r~~~~~  106 (398)
                      ..+.++..+||..++   .++|+.++++|+||+.+++|+.++...|.+++......    .           ++|+. ++
T Consensus        57 ~~~~~~~~~~~~~~~~~g~~~g~~~~vvv~dpe~i~~il~~~~~~~~k~~~~~~~~~~~g~gl~~~~g~~Wr~~Rk~-l~  135 (500)
T PLN02169         57 DWTVEVLEASNLTFYFKGPWLSGTDMLFTADPKNIHHILSSNFGNYPKGPEFKKIFDVLGEGILTVDFELWEDLRKS-NH  135 (500)
T ss_pred             HHHHHHHHhCCCcEEEEeeccCCCCeEEEcCHHHHHHHHhhCcccCCCcHHHHHHHHhhcCcccccCcHHHHHHHHH-HH
Confidence            334444445886655   67889999999999999999987666565543221110    0           66666 78


Q ss_pred             hhcchhHHHHH--HHHHHHHHHHHHHHHHhhcccccccccCCCCcchHHHHHHHHHHHHHHHHhcccccccchh-HHhHH
Q 035560          107 SLLNSNRIEQF--RRVRKDKIFRMVEKISKLGDAADEDASSKAPINVSEIAMTCVRNIIFRVTFRKRFEVDGTA-AVNRM  183 (398)
Q Consensus       107 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~~~~~-~~~~~  183 (398)
                      +.|+...+..+  .+.+.+.++.+++.+.+...       ++.++|+.+.+..++++++++++||.+.+..+.+ ...++
T Consensus       136 p~F~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------~~~~vd~~~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~  208 (500)
T PLN02169        136 ALFHNQDFIELSLSSNKSKLKEGLVPFLDNAAH-------ENIIIDLQDVFMRFMFDTSSILMTGYDPMSLSIEMLEVEF  208 (500)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCeEeHHHHHHHHHHHHHHhheeCCCccccCCCCCCCHH
Confidence            99998877643  46677777888888875433       5678999999999999999999999987543211 00233


Q ss_pred             HHHHHHHhhhhcccccccccccchh----hhc---------cchhhHHHHHHHHHHhhh-C---------CCCChHHHHH
Q 035560          184 DFLLAETQLLSGTIFFSDCSYSFIG----NCL---------DGLTGMHRCLQKHFKDYA-G---------QQGDLIDDLL  240 (398)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~p~l~----~~~---------~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~ll  240 (398)
                      .............   ... .|++.    .+.         .........+.+.+++++ .         ...|+++.++
T Consensus       209 ~~~~~~~~~~~~~---~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~r~~~~~~~~~~~~~~~d~l~~ll  284 (500)
T PLN02169        209 GEAADIGEEAIYY---RHF-KPVILWRLQNWIGIGLERKMRTALATVNRMFAKIISSRRKEEISRAETEPYSKDALTYYM  284 (500)
T ss_pred             HHHHHHHHHHHHh---HHh-ccHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcCHHHHHH
Confidence            3333332221110   001 22110    010         111112222223333222 1         1368999998


Q ss_pred             hhhhc-----CCCCHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcChhHHHHHHHHHHHHhccch-----hHHHHHHHh
Q 035560          241 SLTKA-----GYLTLDAVKAAIMEIFIGTTDTSKVTIAMAMTLLMKNPEAMKKAQEEVRSVVKDKG-----VLNAVIKET  310 (398)
Q Consensus       241 ~~~~~-----~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~-----~l~a~i~E~  310 (398)
                      +...+     ..++++++.+++.++++||+|||+++++|++++|++||++|+|+++||++++..++     .++||++||
T Consensus       285 ~~~~~~~~~~~~~~~~~i~~~~~~~l~AG~dTTa~tl~w~l~~La~~Pevq~kl~~Ei~~v~~~~dl~~L~Yl~avi~Et  364 (500)
T PLN02169        285 NVDTSKYKLLKPKKDKFIRDVIFSLVLAGRDTTSSALTWFFWLLSKHPQVMAKIRHEINTKFDNEDLEKLVYLHAALSES  364 (500)
T ss_pred             hccccccccccCCChHHHHHHHHHHHHhchhHHHHHHHHHHHHHHCCHHHHHHHHHHHHhhCCHHHHhcCHHHHHHHHHH
Confidence            76432     13788999999999999999999999999999999999999999999999875333     299999999


Q ss_pred             hcCCCCCCCCccccceeeee-cceEeCCCceEeeC---------------CcccCCcccCCCCCCC-CCCccccccCCCC
Q 035560          311 MRIQPATQFIPKATIESCVI-DGYHTPAKTMVLVN---------------DKFIPERFVGSNIDMG-GQNFEFIPFGSGR  373 (398)
Q Consensus       311 lRl~p~~~~~~r~~~~d~~l-~g~~ip~g~~v~~~---------------~~f~PeRf~~~~~~~~-~~~~~~~~Fg~G~  373 (398)
                      ||++|++|...|.+.+|.++ +|+.||||+.|.++               ++|+||||++++++.. ..+.+|+|||+|+
T Consensus       365 LRl~P~vp~~~r~~~~d~~~~~G~~IpkGt~v~i~~~~ihrd~~~w~~dP~~F~PeRfl~~~~~~~~~~~~~~lPFG~Gp  444 (500)
T PLN02169        365 MRLYPPLPFNHKAPAKPDVLPSGHKVDAESKIVICIYALGRMRSVWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGP  444 (500)
T ss_pred             HhcCCCCCcCceecCCCCCccCCEEECCCCEEEEcHHHhhCCccccCCChhhcCccccCCCCCCccCCCCccccCCCCCC
Confidence            99999999777877777665 99999999999998               7899999997653322 2467999999999


Q ss_pred             CCCcchhhhHHHHHHHHHHHhhhcC
Q 035560          374 RICPGIHMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       374 r~C~G~~la~~~~~~~l~~ll~~fd  398 (398)
                      |+|+|++||++|++++++.++++|+
T Consensus       445 R~CiG~~~A~~e~k~~la~ll~~f~  469 (500)
T PLN02169        445 RTCLGKHLALLQMKIVALEIIKNYD  469 (500)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHCE
Confidence            9999999999999999999999995


No 27 
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=100.00  E-value=5.3e-53  Score=387.23  Aligned_cols=345  Identities=16%  Similarity=0.184  Sum_probs=248.8

Q ss_pred             CCCCCCCCCCCC---c------------chHHHHHHHHHhhCCeEEEecCCccEEEecCHHHHHHHHHhcccccCCCCCc
Q 035560           29 SPHNWQPVPVRY---Q------------KLAFYLWKISKQYGPVFSLRLGFRPAIIISSAKLAKEAFKTHDLQFAGRPVL   93 (398)
Q Consensus        29 ~~~~~ppgp~~~---~------------~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~~~~~~~i~~~~~~~~~~~~~~   93 (398)
                      .+.+.||||.++   +            +++.++.++.++||++|++++++.+.++|+||+.+++++.++...|.+++..
T Consensus        27 ~~~~lppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~l~~~~~vvv~~pe~~~~il~~~~~~f~~~~~~  106 (472)
T PLN02987         27 RRMRLPPGSLGLPLVGETLQLISAYKTENPEPFIDERVARYGSLFMTHLFGEPTVFSADPETNRFILQNEGKLFECSYPG  106 (472)
T ss_pred             CCCCCcCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhchhhhhhhcCCCeEEEeCHHHHHHHHhCCCceEEecCcH
Confidence            444678899876   1            2566788999999999999999999999999999999998776666443211


Q ss_pred             ch---------h------hHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchHHHHHHH
Q 035560           94 LG---------S------QIDMRKRFVTSLLNSNRIEQFRRVRKDKIFRMVEKISKLGDAADEDASSKAPINVSEIAMTC  158 (398)
Q Consensus        94 ~~---------~------~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vdl~~~~~~~  158 (398)
                      ..         .      ..++|+. +.+.++.+.++.+.   .+++.++++.....         ..+++++.+.+..+
T Consensus       107 ~~~~~lg~~~l~~~~g~~wr~~R~~-~~~f~~~~~~~~~~---~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~  173 (472)
T PLN02987        107 SISNLLGKHSLLLMKGNLHKKMHSL-TMSFANSSIIKDHL---LLDIDRLIRFNLDS---------WSSRVLLMEEAKKI  173 (472)
T ss_pred             HHHHHhCcccccccCcHHHHHHHHH-HHHhcChHHHHHHH---HHHHHHHHHHHHHh---------hccceehHHHHHHH
Confidence            00         0      0056666 45433434444332   22233333332211         12468999999999


Q ss_pred             HHHHHHHHHhcccccccchhHHhHHHHHHHHHhhhhcccccccccccchh----hhccchhhHHHHHHHHHHhhh-----
Q 035560          159 VRNIIFRVTFRKRFEVDGTAAVNRMDFLLAETQLLSGTIFFSDCSYSFIG----NCLDGLTGMHRCLQKHFKDYA-----  229 (398)
Q Consensus       159 ~~~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~----~~~~~~~~~~~~~~~~~~~~~-----  229 (398)
                      +++++++++||.+.+...    +.+...+........    ... +|++.    +.........+.+.+.+++++     
T Consensus       174 t~~vi~~~~fg~~~~~~~----~~~~~~~~~~~~~~~----~~~-~p~l~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~  244 (472)
T PLN02987        174 TFELTVKQLMSFDPGEWT----ESLRKEYVLVIEGFF----SVP-LPLFSTTYRRAIQARTKVAEALTLVVMKRRKEEEE  244 (472)
T ss_pred             HHHHHHHHHcCCCChHHH----HHHHHHHHHHHhhhh----cCC-CcCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            999999999998764211    222222222211111    112 34331    111222223333333333322     


Q ss_pred             C--CCCChHHHHHhhhhcCCCCHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcChhHHHHHHHHHHHHhccc-------
Q 035560          230 G--QQGDLIDDLLSLTKAGYLTLDAVKAAIMEIFIGTTDTSKVTIAMAMTLLMKNPEAMKKAQEEVRSVVKDK-------  300 (398)
Q Consensus       230 ~--~~~~~~~~ll~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~-------  300 (398)
                      +  ...|+++.+++..+  +++++++.+++.++++||+|||+++++|++++|++||++|+++++|++++.+..       
T Consensus       245 ~~~~~~d~l~~ll~~~~--~~~~~ei~~~~~~l~~Ag~~tta~~l~~~l~~L~~~P~~~~~l~~E~~~~~~~~~~~~~~~  322 (472)
T PLN02987        245 GAEKKKDMLAALLASDD--GFSDEEIVDFLVALLVAGYETTSTIMTLAVKFLTETPLALAQLKEEHEKIRAMKSDSYSLE  322 (472)
T ss_pred             cCcccccHHHHHHhcCC--CCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhChHHHHHHHHHHHHHHcccCCCCCCC
Confidence            1  34799999997643  599999999999999999999999999999999999999999999999886421       


Q ss_pred             -------hhHHHHHHHhhcCCCCCCCCccccceeeeecceEeCCCceEeeC--------------CcccCCcccCCCCCC
Q 035560          301 -------GVLNAVIKETMRIQPATQFIPKATIESCVIDGYHTPAKTMVLVN--------------DKFIPERFVGSNIDM  359 (398)
Q Consensus       301 -------~~l~a~i~E~lRl~p~~~~~~r~~~~d~~l~g~~ip~g~~v~~~--------------~~f~PeRf~~~~~~~  359 (398)
                             +.++||++|+||++|+++.++|.+.+|++++||.||+|+.|.++              ++|+||||++++.. 
T Consensus       323 ~~~l~~lpyl~a~i~EtLRl~p~~~~~~R~~~~d~~~~G~~ip~Gt~v~~~~~~~~~d~~~~~~p~~F~PeRfl~~~~~-  401 (472)
T PLN02987        323 WSDYKSMPFTQCVVNETLRVANIIGGIFRRAMTDIEVKGYTIPKGWKVFASFRAVHLDHEYFKDARTFNPWRWQSNSGT-  401 (472)
T ss_pred             HHHHhcChHHHHHHHHHHHccCCcCCccccCCCCeeECCEEECCCCEEEEehHHhhCCcccCCCccccCcccCCCCCCC-
Confidence                   11899999999999999988899999999999999999999997              79999999975422 


Q ss_pred             CCCCccccccCCCCCCCcchhhhHHHHHHHHHHHhhhcC
Q 035560          360 GGQNFEFIPFGSGRRICPGIHMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       360 ~~~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~fd  398 (398)
                      ......++|||+|+|.|+|++||.+|++++++.++++||
T Consensus       402 ~~~~~~~l~FG~G~r~C~G~~lA~~e~~~~la~ll~~f~  440 (472)
T PLN02987        402 TVPSNVFTPFGGGPRLCPGYELARVALSVFLHRLVTRFS  440 (472)
T ss_pred             CCCCcceECCCCCCcCCCcHHHHHHHHHHHHHHHHhceE
Confidence            223568999999999999999999999999999999986


No 28 
>PLN02936 epsilon-ring hydroxylase
Probab=100.00  E-value=8.7e-53  Score=389.42  Aligned_cols=344  Identities=24%  Similarity=0.350  Sum_probs=258.1

Q ss_pred             cchHHHHHHHHHhhCCeEEEecCCccEEEecCHHHHHHHHHhcccccCCCCCcchhh---------------HHHHHHHH
Q 035560           41 QKLAFYLWKISKQYGPVFSLRLGFRPAIIISSAKLAKEAFKTHDLQFAGRPVLLGSQ---------------IDMRKRFV  105 (398)
Q Consensus        41 ~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~~~~~~~i~~~~~~~~~~~~~~~~~~---------------~~~r~~~~  105 (398)
                      +.++.++.+++++||++|++++|+.++++++||+++++++.+.+..|.+++......               .++|+. +
T Consensus        36 ~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~~~~~~~~~~i~~~~g~~wk~~Rk~-l  114 (489)
T PLN02936         36 GALFLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNYGSKYAKGLVAEVSEFLFGSGFAIAEGELWTARRRA-V  114 (489)
T ss_pred             cHHHHHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhccccccCcchhhhhHHHhcCccccCCchHHHHHHHh-h
Confidence            678899999999999999999999999999999999999987656665543211100               056666 8


Q ss_pred             HhhcchhHHHHHHH-HHHHHHHHHHHHHHhhcccccccccCCCCcchHHHHHHHHHHHHHHHHhcccccccchhHHhHHH
Q 035560          106 TSLLNSNRIEQFRR-VRKDKIFRMVEKISKLGDAADEDASSKAPINVSEIAMTCVRNIIFRVTFRKRFEVDGTAAVNRMD  184 (398)
Q Consensus       106 ~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~  184 (398)
                      ++.|+...++.+.+ .+.+.++.+++.+.+...       ++.++|+.+++..+++++++.++||.+++..+.+  .++.
T Consensus       115 ~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~-------~g~~vd~~~~~~~~~~dvi~~~~fG~~~~~~~~~--~~~~  185 (489)
T PLN02936        115 VPSLHRRYLSVMVDRVFCKCAERLVEKLEPVAL-------SGEAVNMEAKFSQLTLDVIGLSVFNYNFDSLTTD--SPVI  185 (489)
T ss_pred             cCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCceeHHHHHHHHHHHHHHHHHcCCCccccccC--cHHH
Confidence            99999888887654 778889999999987543       5678999999999999999999999998764322  1222


Q ss_pred             HHHHHHhhhhcccccccccccch-----h-------hhccchhhHHHHHHHHHHhhh-----------------CCCCCh
Q 035560          185 FLLAETQLLSGTIFFSDCSYSFI-----G-------NCLDGLTGMHRCLQKHFKDYA-----------------GQQGDL  235 (398)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~p~l-----~-------~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~  235 (398)
                      ..+......... ..... +|++     .       ........+...+.+.+++.+                 +...++
T Consensus       186 ~~~~~~~~~~~~-~~~~~-~p~~~~~~l~~~~p~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~  263 (489)
T PLN02936        186 QAVYTALKEAET-RSTDL-LPYWKVDFLCKISPRQIKAEKAVTVIRETVEDLVDKCKEIVEAEGEVIEGEEYVNDSDPSV  263 (489)
T ss_pred             HHHHHHHHHHHH-hhhcc-chHHhhHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCchHH
Confidence            222222111110 00111 2221     1       011111111222222222211                 113568


Q ss_pred             HHHHHhhhhcCCCCHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcChhHHHHHHHHHHHHhccch----------hHHH
Q 035560          236 IDDLLSLTKAGYLTLDAVKAAIMEIFIGTTDTSKVTIAMAMTLLMKNPEAMKKAQEEVRSVVKDKG----------VLNA  305 (398)
Q Consensus       236 ~~~ll~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~----------~l~a  305 (398)
                      ++.+++..+  .++++++.+++.++++||+|||+++++|++++|++||++|+++++||+++++...          .++|
T Consensus       264 l~~ll~~~~--~~~~~~i~~~~~~~~~aG~dTta~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~~~~~~~~~~~lpyl~a  341 (489)
T PLN02936        264 LRFLLASRE--EVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKNPEALRKAQEELDRVLQGRPPTYEDIKELKYLTR  341 (489)
T ss_pred             HHHHHhccc--cCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCCHHHHhhCHHHHH
Confidence            888886543  5899999999999999999999999999999999999999999999999876432          1999


Q ss_pred             HHHHhhcCCCCCC-CCccccceeeeecceEeCCCceEeeC--------------CcccCCcccCCCCC--CCCCCccccc
Q 035560          306 VIKETMRIQPATQ-FIPKATIESCVIDGYHTPAKTMVLVN--------------DKFIPERFVGSNID--MGGQNFEFIP  368 (398)
Q Consensus       306 ~i~E~lRl~p~~~-~~~r~~~~d~~l~g~~ip~g~~v~~~--------------~~f~PeRf~~~~~~--~~~~~~~~~~  368 (398)
                      |++||||++|+++ ..+|.+..|+.++||.||+|+.|+++              ++|+||||++++..  ....+..++|
T Consensus       342 vi~EtlRl~p~~~~~~~r~~~~~~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeRwl~~~~~~~~~~~~~~~~p  421 (489)
T PLN02936        342 CINESMRLYPHPPVLIRRAQVEDVLPGGYKVNAGQDIMISVYNIHRSPEVWERAEEFVPERFDLDGPVPNETNTDFRYIP  421 (489)
T ss_pred             HHHHhhhcCCCcccccceeccCccccCCeEECCCCEEEecHHhccCChhhCCCccccCccccCCCCCCccccCCCcceeC
Confidence            9999999999999 55555567777899999999999998              89999999965321  1223468999


Q ss_pred             cCCCCCCCcchhhhHHHHHHHHHHHhhhcC
Q 035560          369 FGSGRRICPGIHMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       369 Fg~G~r~C~G~~la~~~~~~~l~~ll~~fd  398 (398)
                      ||.|+|.|+|++||++|++++++.++++|+
T Consensus       422 Fg~G~R~C~G~~la~~~~~~~la~ll~~f~  451 (489)
T PLN02936        422 FSGGPRKCVGDQFALLEAIVALAVLLQRLD  451 (489)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHhCe
Confidence            999999999999999999999999999996


No 29 
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=1.6e-52  Score=354.97  Aligned_cols=342  Identities=19%  Similarity=0.285  Sum_probs=261.0

Q ss_pred             cchHHHHHHHHHhhCCeEEEecCCccEEEecCHHHHHHHHHhcccc--------------cCCCCCcchhhH---HHHHH
Q 035560           41 QKLAFYLWKISKQYGPVFSLRLGFRPAIIISSAKLAKEAFKTHDLQ--------------FAGRPVLLGSQI---DMRKR  103 (398)
Q Consensus        41 ~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~~~~~~~i~~~~~~~--------------~~~~~~~~~~~~---~~r~~  103 (398)
                      ++|..+++++.+|||+||.+.++|+.+.++.+|+....+++.+...              |..+-.......   ++.+.
T Consensus        51 k~P~eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~~~~ld~~~~~~~l~~~vFg~~v~~d~~~~~~~e~~~~  130 (486)
T KOG0684|consen   51 KDPLEFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAKLADLDFEEAYSKLTTPVFGKGVVYDVPNHVMMEQKKF  130 (486)
T ss_pred             cCHHHHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCcccccCHHHHHHHhhhhhcCCCccccCCCchHHHHHHH
Confidence            9999999999999999999999999999999999999999755222              221111111111   34444


Q ss_pred             HHHhhcchhHHHHHHHHHHHHHHHHHHH-HHhhcccccccccCCCCcchHHHHHHHHHHHHHHHHhcccccccchhHHhH
Q 035560          104 FVTSLLNSNRIEQFRRVRKDKIFRMVEK-ISKLGDAADEDASSKAPINVSEIAMTCVRNIIFRVTFRKRFEVDGTAAVNR  182 (398)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~  182 (398)
                       ....+....++++.+.+.+++++.++. +.+          ++....+.+.+..+++.+.-.+++|......+.+. ..
T Consensus       131 -~k~~L~~~~lk~~~e~m~~el~~~f~~~~~~----------s~~~d~l~~~~~~ii~tAs~~ll~~e~r~~~d~~~-a~  198 (486)
T KOG0684|consen  131 -FKSALGGVALKSLVELMLEELHAYFETSLGE----------SGETDGLYTFCRLIIFTASRLLLGGEVRDQLDADV-AK  198 (486)
T ss_pred             -HHHHhchhhHHHHHHHHHHHHHHHHhccccc----------ccchhHhhhhhHHHhhhhHHHhhhhhhhhhhcchH-HH
Confidence             778888899999999999999988887 322          56667788888888998888888887766544343 23


Q ss_pred             HHHHHHHHhhhhcccccccccccchhhhccchhhHHHHHHHHHHh----hh----CCCCChHHHHHhhhhcC-CCCHHHH
Q 035560          183 MDFLLAETQLLSGTIFFSDCSYSFIGNCLDGLTGMHRCLQKHFKD----YA----GQQGDLIDDLLSLTKAG-YLTLDAV  253 (398)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~ll~~~~~~-~l~~~~i  253 (398)
                      +..-+...+..+...++.....|.+++.    .+.++++.+.+..    +|    ....|+++.+++..+++ ..+++|+
T Consensus       199 l~~dLd~~F~~~d~~FP~~LP~~~~r~~----~ra~~~i~k~f~~~i~~rr~s~s~~~~dmlq~l~~~y~dg~~~te~e~  274 (486)
T KOG0684|consen  199 LYHDLDQGFQPFDFLFPYNLPIPLLRRR----DRARKKISKIFSKIILDRRASISKWDNDMLQSLMEKYKDGRPTTEEEI  274 (486)
T ss_pred             HHHHHhccccchHhhcccCCCcchhhhH----HHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHhhcCCcCcHHHH
Confidence            3332333222222222211112333311    2344444444433    33    23568899998844433 7899999


Q ss_pred             HHHHHHHhhhcccchHHHHHHHHHHHhcChhHHHHHHHHHHHHhccchh------------HHHHHHHhhcCCCCCCCCc
Q 035560          254 KAAIMEIFIGTTDTSKVTIAMAMTLLMKNPEAMKKAQEEVRSVVKDKGV------------LNAVIKETMRIQPATQFIP  321 (398)
Q Consensus       254 ~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~~------------l~a~i~E~lRl~p~~~~~~  321 (398)
                      +...+.++|||+.|++.+.+|++++|++|||+++.+++|++++++....            |+.||+|||||+||.+.+.
T Consensus       275 a~~li~~LwA~Q~ns~ptsfW~l~yLl~~Pe~~~a~~eE~k~vlG~~~~~l~~d~L~~lplL~~~IkEtLRL~~p~~~~~  354 (486)
T KOG0684|consen  275 AGLLIGLLWAGQHNSSPTSFWTLAYLLRHPEAQKAVREEQKRVLGEKKEKLTYDQLKDLPLLDSCIKETLRLHPPAHSLM  354 (486)
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhhccCCCCCHHHHhcchHHHHHHHHHHhcCCchhhHH
Confidence            9999999999999999999999999999999999999999999975433            9999999999999999888


Q ss_pred             cccceeeeecc----eEeCCCceEeeC--------------CcccCCcccCCCCCCCC----CCccccccCCCCCCCcch
Q 035560          322 KATIESCVIDG----YHTPAKTMVLVN--------------DKFIPERFVGSNIDMGG----QNFEFIPFGSGRRICPGI  379 (398)
Q Consensus       322 r~~~~d~~l~g----~~ip~g~~v~~~--------------~~f~PeRf~~~~~~~~~----~~~~~~~Fg~G~r~C~G~  379 (398)
                      |.+.+|.++.+    |.||+|..|.++              +.|+|+||++++++.++    -...++|||+|.|.|||+
T Consensus       355 R~v~~D~tv~~~~~~Y~Ip~G~~valsP~~~hr~peif~dp~~Fk~dRf~~~~~~~~k~g~kl~yy~mpfGaGr~~CpGr  434 (486)
T KOG0684|consen  355 RKVHEDLTVPGSDGEYVIPKGDIVALSPFLLHRDPEIFPDPEDFKPDRFLKDNGESKKNGEKLDYYYMPFGAGRHRCPGR  434 (486)
T ss_pred             HhhccceeeccCCcceecCCCCEEEeccccccCCccccCChhhCChhhccCCCcccccccccccccccccCCCcCCCCch
Confidence            99999999966    999999999998              89999999987644311    235679999999999999


Q ss_pred             hhhHHHHHHHHHHHhhhcC
Q 035560          380 HMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       380 ~la~~~~~~~l~~ll~~fd  398 (398)
                      .||.+|++.++..+|++||
T Consensus       435 ~FA~~eIk~~~~l~L~~fd  453 (486)
T KOG0684|consen  435 SFAYLEIKQFISLLLRHFD  453 (486)
T ss_pred             HHHHHHHHHHHHHHHHHcc
Confidence            9999999999999999997


No 30 
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=100.00  E-value=5.1e-51  Score=377.00  Aligned_cols=353  Identities=17%  Similarity=0.208  Sum_probs=255.0

Q ss_pred             CCCCCCCCC--cchHHHHHHHHHhhC-CeEEEecCCccEEEecCHHHHHHHHHhcccccCCCCCcchh------------
Q 035560           32 NWQPVPVRY--QKLAFYLWKISKQYG-PVFSLRLGFRPAIIISSAKLAKEAFKTHDLQFAGRPVLLGS------------   96 (398)
Q Consensus        32 ~~ppgp~~~--~~~~~~~~~~~~kyG-~v~~~~~~~~~~vvv~~~~~~~~i~~~~~~~~~~~~~~~~~------------   96 (398)
                      ...+|+...  .+....+.++.++++ .+++++.++.  ++++||+.+++++..+...|.+.......            
T Consensus        49 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--iv~~dpe~i~~vl~~~~~~~~k~~~~~~~~~~~~g~gi~~~  126 (502)
T PLN02426         49 AYLTASWAKDFDNLCDWYAHLLRRSPTGTIHVHVLGN--TITANPENVEYMLKTRFDNYPKGKPFSAILGDLLGRGIFNV  126 (502)
T ss_pred             CCccHHHHHhcccHHHHHHHHHHhCCCcEEEEecCCc--EEecCHHHHHHHHhhChhcCCCcHhHHHHHHHhcCCceeec
Confidence            344555432  555667767888876 5788876554  89999999999998765556543221100            


Q ss_pred             ----hHHHHHHHHHhhcchhHHHHHH--HHHHHHHHHHHHHHHhhcccccccccCCCCcchHHHHHHHHHHHHHHHHhcc
Q 035560           97 ----QIDMRKRFVTSLLNSNRIEQFR--RVRKDKIFRMVEKISKLGDAADEDASSKAPINVSEIAMTCVRNIIFRVTFRK  170 (398)
Q Consensus        97 ----~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vdl~~~~~~~~~~~~~~~~fG~  170 (398)
                          ..++||. +++.|+...++.+.  +.+.+..+.+++.+.+..+.     +++.++|+.+++..+++|+++.++||.
T Consensus       127 ~g~~wk~~Rk~-l~~~fs~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~vd~~~~~~~~t~dvi~~~~fG~  200 (502)
T PLN02426        127 DGDSWRFQRKM-ASLELGSVSIRSYAFEIVASEIESRLLPLLSSAADD-----GEGAVLDLQDVFRRFSFDNICKFSFGL  200 (502)
T ss_pred             CcHHHHHHHHH-hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCceEcHHHHHHHHHHHHHHHHHhCC
Confidence                0066666 79999999888763  66777777888888754321     034679999999999999999999999


Q ss_pred             cccccchh-HHhHHHHHHHHHhhhhcccccccccccchh---hhc---------cchhhHHHHHHHHHHhhh----CCCC
Q 035560          171 RFEVDGTA-AVNRMDFLLAETQLLSGTIFFSDCSYSFIG---NCL---------DGLTGMHRCLQKHFKDYA----GQQG  233 (398)
Q Consensus       171 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~---~~~---------~~~~~~~~~~~~~~~~~~----~~~~  233 (398)
                      +++..+.+ ...++.+.+........... ... .|++.   .++         .....+.+.+.+.+++++    +...
T Consensus       201 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~r~~~~~~~~~  278 (502)
T PLN02426        201 DPGCLELSLPISEFADAFDTASKLSAERA-MAA-SPLLWKIKRLLNIGSERKLKEAIKLVDELAAEVIRQRRKLGFSASK  278 (502)
T ss_pred             CCcccCCCCCccHHHHHHHHHHHHHHHHH-hcc-hhHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCcc
Confidence            98754321 11334444433322111100 011 22111   011         111122222233333332    2357


Q ss_pred             ChHHHHHhhhhcCCCCHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcChhHHHHHHHHHHHHhccch------------
Q 035560          234 DLIDDLLSLTKAGYLTLDAVKAAIMEIFIGTTDTSKVTIAMAMTLLMKNPEAMKKAQEEVRSVVKDKG------------  301 (398)
Q Consensus       234 ~~~~~ll~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~------------  301 (398)
                      |+++.+++..    .+++++.+++.++++||+|||+++++|++++|++||++|+|+++||+++.+...            
T Consensus       279 dll~~ll~~~----~~~~~l~~~~~~~l~AG~dTta~~l~~~l~~L~~~P~v~~kl~~Ei~~~~~~~~~~~t~~~l~~Lp  354 (502)
T PLN02426        279 DLLSRFMASI----NDDKYLRDIVVSFLLAGRDTVASALTSFFWLLSKHPEVASAIREEADRVMGPNQEAASFEEMKEMH  354 (502)
T ss_pred             hHHHHHHhcC----CCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCCCCHHHHhcCh
Confidence            8999999764    378899999999999999999999999999999999999999999999876422            


Q ss_pred             hHHHHHHHhhcCCCCCCCCccccceeeee-cceEeCCCceEeeC---------------CcccCCcccCCCCCCCCCCcc
Q 035560          302 VLNAVIKETMRIQPATQFIPKATIESCVI-DGYHTPAKTMVLVN---------------DKFIPERFVGSNIDMGGQNFE  365 (398)
Q Consensus       302 ~l~a~i~E~lRl~p~~~~~~r~~~~d~~l-~g~~ip~g~~v~~~---------------~~f~PeRf~~~~~~~~~~~~~  365 (398)
                      .++|||+|+||++||+|...|.+.+|.++ +|+.||+|+.|.++               ++|+||||++++......+..
T Consensus       355 Yl~avi~EtLRl~p~v~~~~r~~~~d~~~~~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~~~~~~~~~~  434 (502)
T PLN02426        355 YLHAALYESMRLFPPVQFDSKFAAEDDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNGVFVPENPFK  434 (502)
T ss_pred             HHHHHHHHHHhCCCCCCCcceeeccCCCcCCCcEECCCCEEEEchHHhcCCccccCcChhhcCccccCCCCCcCCCCCcc
Confidence            19999999999999999777999998887 89999999999998               789999999743111234568


Q ss_pred             ccccCCCCCCCcchhhhHHHHHHHHHHHhhhcC
Q 035560          366 FIPFGSGRRICPGIHMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       366 ~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~fd  398 (398)
                      ++|||+|+|.|+|++||++|++++++.++++||
T Consensus       435 ~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~  467 (502)
T PLN02426        435 YPVFQAGLRVCLGKEMALMEMKSVAVAVVRRFD  467 (502)
T ss_pred             cCCCCCCCCCCccHHHHHHHHHHHHHHHHHHce
Confidence            999999999999999999999999999999996


No 31 
>PLN02648 allene oxide synthase
Probab=100.00  E-value=6.1e-47  Score=344.68  Aligned_cols=349  Identities=18%  Similarity=0.230  Sum_probs=242.9

Q ss_pred             CCCCCCCCCCCCC---------------cchHHHHHHHHHhhCC-eEEEecCCccE-------EEecCHHHHHHHHHh--
Q 035560           28 SSPHNWQPVPVRY---------------QKLAFYLWKISKQYGP-VFSLRLGFRPA-------IIISSAKLAKEAFKT--   82 (398)
Q Consensus        28 ~~~~~~ppgp~~~---------------~~~~~~~~~~~~kyG~-v~~~~~~~~~~-------vvv~~~~~~~~i~~~--   82 (398)
                      ..|.+.|||+.+|               .++..++.+.++|||+ ||+++++|.+.       |+++||++++.+|.+  
T Consensus        13 ~~~~~~PPg~~g~P~iG~~~~~~~~~~~~~~~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~~~~v~~~~~   92 (480)
T PLN02648         13 SLPLREIPGSYGLPFLGAIKDRLDYFYFQGEDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKSFPVLFDVSK   92 (480)
T ss_pred             CCCCCCCCCCCCCcCcchhhhhhhHHHhcChHHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCceeeeecchh
Confidence            3566679999887               2336899999999999 99999998655       999999999999974  


Q ss_pred             --cccccCCC-C----C---------cch--hhH-HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 035560           83 --HDLQFAGR-P----V---------LLG--SQI-DMRKRFVTSLLNSNRIEQFRRVRKDKIFRMVEKISKLGDAADEDA  143 (398)
Q Consensus        83 --~~~~~~~~-~----~---------~~~--~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  143 (398)
                        ++..+... +    .         ...  ..+ +.|+. +.+.|+ ..++.+.+.+.+.++++++.|.....      
T Consensus        93 ~~~~~~~~~~~~~~~~l~G~~~~~s~~~~~g~~H~r~Rrl-l~~~f~-~~~~~~~~~m~~~~~~~~~~w~~~~~------  164 (480)
T PLN02648         93 VDKRDVFTGTYMPSTAFTGGYRVLSYLDPSEPKHAKLKSF-LFELLK-SRHRRFIPEFRAAFAELFDTWEAELA------  164 (480)
T ss_pred             ccccccceeeeccCccccCCceeeeecCCCCchHHHHHHH-HHHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHh------
Confidence              32222211 0    0         000  111 55555 899998 57788999999999999999965422      


Q ss_pred             cCCCCcchHHHHHHHHHHHHHHHHhcccccccchhHHhHHHHHHHHHhhhhccccccccccc-chhhhc-cch-------
Q 035560          144 SSKAPINVSEIAMTCVRNIIFRVTFRKRFEVDGTAAVNRMDFLLAETQLLSGTIFFSDCSYS-FIGNCL-DGL-------  214 (398)
Q Consensus       144 ~~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~l~~~~-~~~-------  214 (398)
                       ++..+|+.+.+..++++++++++||.+.+..  ...+.+......+............ +| ++...+ ...       
T Consensus       165 -~~~~vdv~~~~~~lt~~vi~~~lfG~~~~~~--~l~~~~~~~~~~~~~~~~~p~~~~~-l~~~~~~~i~~~~~~~~~~~  240 (480)
T PLN02648        165 -KKGKAEFNDPLDQMAFNFLCKALTGKDPSET--ALGSDGPALIQKWLALQLAPLASTG-LPHVLEELLLHTFPLPFFLV  240 (480)
T ss_pred             -hCCCccccchHHHHHHHHHHHHHcCCCcchh--hhccchhHHHHHHHHHHhhHHHHcC-chHHHHHHhhcccCCchhhh
Confidence             4557999999999999999999999876541  0101111122211110000000000 11 111000 000       


Q ss_pred             hhHHHHHHHHHHhhhCCCCChHHHHHhhhhcCCCCHHHHHHHHHH-HhhhcccchHHHHHHHHHHHhcChh-HHHHHHHH
Q 035560          215 TGMHRCLQKHFKDYAGQQGDLIDDLLSLTKAGYLTLDAVKAAIME-IFIGTTDTSKVTIAMAMTLLMKNPE-AMKKAQEE  292 (398)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~i~~~~~~-~~~ag~~tt~~~l~~~l~~l~~~p~-~~~~l~~E  292 (398)
                      ....+.+.+.+.       +.++.+++..++.+++++++.++++. +.+++++|++++++|++++|++||+ +|+++++|
T Consensus       241 ~~~~~~~~~~~~-------~~~~~ll~~~~~~~l~~~ei~~~~l~~~~~~t~~~~~~~l~~~l~~L~~~p~~v~~klr~E  313 (480)
T PLN02648        241 KSDYDKLYDFFR-------ASATEALDLAEKFGISREEALHNLLFVLGFNAFGGFKIFFPALLKWVGRAGEELQARLAEE  313 (480)
T ss_pred             hccHHHHHHHHH-------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            011111111111       12334444433346999999999875 4456788888899999999999995 99999999


Q ss_pred             HHHHhccc--h----------hHHHHHHHhhcCCCCCCCCccccceeeeec----ceEeCCCceEeeC------------
Q 035560          293 VRSVVKDK--G----------VLNAVIKETMRIQPATQFIPKATIESCVID----GYHTPAKTMVLVN------------  344 (398)
Q Consensus       293 i~~~~~~~--~----------~l~a~i~E~lRl~p~~~~~~r~~~~d~~l~----g~~ip~g~~v~~~------------  344 (398)
                      |+.+.+..  .          .+++|++|+||++|+++...|++.+|++++    ||.||||+.|.++            
T Consensus       314 i~~~~~~~~~~~t~~~l~~l~yl~avi~EtLRl~p~v~~~~r~a~~d~~l~~~~~g~~IpkG~~V~~~~~~~hrdp~~~~  393 (480)
T PLN02648        314 VRSAVKAGGGGVTFAALEKMPLVKSVVYEALRIEPPVPFQYGRAREDFVIESHDAAFEIKKGEMLFGYQPLVTRDPKVFD  393 (480)
T ss_pred             HHHHhccCCCCCCHHHHhcCHHHHHHHHHHHhhcCCcccccceecCCEEEecCCceEEECCCCEEEEChHHHhCCcccCC
Confidence            99987521  1          189999999999999998889999999996    7999999999987            


Q ss_pred             --CcccCCcccCCCCCCCCCCcccccc---------CCCCCCCcchhhhHHHHHHHHHHHhhhcC
Q 035560          345 --DKFIPERFVGSNIDMGGQNFEFIPF---------GSGRRICPGIHMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       345 --~~f~PeRf~~~~~~~~~~~~~~~~F---------g~G~r~C~G~~la~~~~~~~l~~ll~~fd  398 (398)
                        ++|||+||++++.+   ....+++|         |+|+|.|+|++||++|++++++.++++|+
T Consensus       394 dP~~F~PeRf~~~~~~---~~~~~~~f~~g~~~~~~G~G~R~C~G~~~A~~e~~~~la~Ll~~f~  455 (480)
T PLN02648        394 RPEEFVPDRFMGEEGE---KLLKYVFWSNGRETESPTVGNKQCAGKDFVVLVARLFVAELFLRYD  455 (480)
T ss_pred             CcceeCCCCCCCCCcc---ccccccccCCCcccCCCCCCCccCccHHHHHHHHHHHHHHHHHHhC
Confidence              89999999875321   12344444         66789999999999999999999999996


No 32 
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00  E-value=7.5e-46  Score=333.75  Aligned_cols=320  Identities=23%  Similarity=0.351  Sum_probs=254.4

Q ss_pred             hHHHHHHHHHhhCCeEEEecCCcc--EEEecCHHHHHHHHHhcc--cccCCCCC--------cc--------hhhH-HHH
Q 035560           43 LAFYLWKISKQYGPVFSLRLGFRP--AIIISSAKLAKEAFKTHD--LQFAGRPV--------LL--------GSQI-DMR  101 (398)
Q Consensus        43 ~~~~~~~~~~kyG~v~~~~~~~~~--~vvv~~~~~~~~i~~~~~--~~~~~~~~--------~~--------~~~~-~~r  101 (398)
                      +......+.+.||.++.++..++.  .++++++++++++++++.  ........        ..        ...+ ++|
T Consensus        24 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~dg~~H~r~R  103 (411)
T COG2124          24 PRFFLERAEDPYGDYFTLRLPGPGDGFWVVSRPADVREVLRDPRFFSSALGAGLRPRLLRPVLGDGSLLTLDGPEHTRLR  103 (411)
T ss_pred             hhhhHHHHhCCCchhhhhhccCccceEEEEcCHHHHHHHHcCcccccccccccccccchhhhccccceeecCCHHHHHHH
Confidence            445666788889999998877665  899999999999998653  11111000        00        0011 566


Q ss_pred             HHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchHHHHHHHHHHHHHHHHhcccccccchhHHh
Q 035560          102 KRFVTSLLNSNRIEQFRRVRKDKIFRMVEKISKLGDAADEDASSKAPINVSEIAMTCVRNIIFRVTFRKRFEVDGTAAVN  181 (398)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~  181 (398)
                      +. +++.|+++.++.+.+.+.+.++++++.+ .          .+..+++.+....++.++++ .+||.+.++    . .
T Consensus       104 kl-~~~~F~~~~~~~~~~~i~~~~~~~~~~~-~----------~~~~~~v~~~a~~l~~~vi~-~l~Gv~~~~----~-~  165 (411)
T COG2124         104 KL-LAPAFTPRALRGYRPLIREIADRLLDDL-W----------QGGADLVLDFAAELTLRVIA-ELLGVPLED----R-P  165 (411)
T ss_pred             HH-hccccCHHHHHHHHHHHHHHHHHHHHhc-c----------cCCchhHHHHhhhhhHHHHH-HHhCCCHHH----H-H
Confidence            66 8999999999999999999999999998 3          34778899999999999999 999998873    3 3


Q ss_pred             HHHHHHHHHhhhhcccccccccccchhhhccchhhHHHHHHHHHHhhh-CCCCChHHHHHhhhhcCC--CCHHHHHHHHH
Q 035560          182 RMDFLLAETQLLSGTIFFSDCSYSFIGNCLDGLTGMHRCLQKHFKDYA-GQQGDLIDDLLSLTKAGY--LTLDAVKAAIM  258 (398)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--l~~~~i~~~~~  258 (398)
                      .+..+.......... ..... .++.. .......+.+.+.+.++++| ....|+++.++.+.++++  +|++||.++++
T Consensus       166 ~~~~~~~~~~~~~~~-~~~~~-~~~~~-~~~a~~~~~~~~~~li~~rR~~~~~dlls~l~~a~~~~~~~lsd~Ei~~~~~  242 (411)
T COG2124         166 QLLRWSDALLLRLDP-DLGPE-EPWRR-ARAARRELDAYLRALIAERRAAPRDDLLSLLLSAEDDGGGRLSDDEIRDELI  242 (411)
T ss_pred             HHHHHHHHHHhccCc-ccCCc-ccHHH-HHHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHhhCCCCcCCHHHHHHHHH
Confidence            344443333332110 00000 11222 23334456666677777766 578999999999988764  99999999999


Q ss_pred             HHhhhcccchHHHHHHHHHHHhcChhHHHHHHHHHHHHhccchhHHHHHHHhhcCCCCCCCCccccceeeeecceEeCCC
Q 035560          259 EIFIGTTDTSKVTIAMAMTLLMKNPEAMKKAQEEVRSVVKDKGVLNAVIKETMRIQPATQFIPKATIESCVIDGYHTPAK  338 (398)
Q Consensus       259 ~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~~l~a~i~E~lRl~p~~~~~~r~~~~d~~l~g~~ip~g  338 (398)
                      ++++||+|||+++|+|+++.|++||++++++++|.+.     ..++++++|+||++||++...|.+.+|++++|+.||+|
T Consensus       243 ~ll~AGheTTa~~l~~a~~~L~~~P~~~~~l~~e~~~-----~~~~~~v~E~LR~~ppv~~~~R~~~~d~~igg~~Ip~G  317 (411)
T COG2124         243 TLLVAGHETTANALAWALYALLRHPDQLAKLRAEPDR-----PLLEAVVEETLRLYPPVPLARRVATEDVELGGYRIPAG  317 (411)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHCchHHHHHHhCcch-----HHHHHHHHHHHHhCCchhccceeccCCEeeCCEEeCCC
Confidence            9999999999999999999999999999999998666     34789999999999999998899999999999999999


Q ss_pred             ceEeeC--------------CcccCCcccCCCCCCCCCCccccccCCCCCCCcchhhhHHHHHHHHHHHhhhcC
Q 035560          339 TMVLVN--------------DKFIPERFVGSNIDMGGQNFEFIPFGSGRRICPGIHMAVPSVQLALANLLYKFD  398 (398)
Q Consensus       339 ~~v~~~--------------~~f~PeRf~~~~~~~~~~~~~~~~Fg~G~r~C~G~~la~~~~~~~l~~ll~~fd  398 (398)
                      +.|.++              ++|||+||.          ..++|||+|+|.|+|.+||++|++++++.++++|+
T Consensus       318 ~~V~~~~~~anrDp~~f~~P~~F~p~R~~----------~~~l~FG~G~H~ClG~~lA~~E~~~~l~~ll~r~~  381 (411)
T COG2124         318 TVVLLSIGAANRDPEVFPDPDEFDPERFN----------NAHLPFGGGPHRCLGAALARLELKVALAELLRRFP  381 (411)
T ss_pred             CEEEecHhhhcCChhhCCChhhcCCCCCC----------CCCcCCCCCCccccCHHHHHHHHHHHHHHHHHhCc
Confidence            999998              677777774          68999999999999999999999999999999985


No 33 
>PF12554 MOZART1:  Mitotic-spindle organizing gamma-tubulin ring associated;  InterPro: IPR022214  This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important. 
Probab=81.34  E-value=5.4  Score=23.52  Aligned_cols=43  Identities=21%  Similarity=0.239  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHhhhcccchHHHHHHHHHHHhcChhHHHHHHHHH
Q 035560          251 DAVKAAIMEIFIGTTDTSKVTIAMAMTLLMKNPEAMKKAQEEV  293 (398)
Q Consensus       251 ~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei  293 (398)
                      -++...+..++-.|.|..+-.++-.|++..-||+....+-+|+
T Consensus         5 ~d~l~eiS~lLntgLd~etL~ici~L~e~GVnPeaLA~vI~el   47 (48)
T PF12554_consen    5 LDVLHEISDLLNTGLDRETLSICIELCENGVNPEALAAVIKEL   47 (48)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence            3567777888888999999999999999999999999888776


No 34 
>PF12508 DUF3714:  Protein of unknown function (DUF3714) ;  InterPro: IPR022187  Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage. 
Probab=78.77  E-value=1.7  Score=34.95  Aligned_cols=50  Identities=20%  Similarity=0.274  Sum_probs=37.5

Q ss_pred             HHHHHHHhhcCCCCCCCCccccceeeeecceEeCCCceEeeCCcccCCccc
Q 035560          303 LNAVIKETMRIQPATQFIPKATIESCVIDGYHTPAKTMVLVNDKFIPERFV  353 (398)
Q Consensus       303 l~a~i~E~lRl~p~~~~~~r~~~~d~~l~g~~ip~g~~v~~~~~f~PeRf~  353 (398)
                      +.|||.|+.-..... .+.=+..+|+.++|..||||+.+.-...|.++|-.
T Consensus        55 I~A~V~~~qtv~~Gs-~vrlRLle~i~i~g~~IPkgt~l~G~~~~~~~Rl~  104 (200)
T PF12508_consen   55 IRAVVDGTQTVVDGS-RVRLRLLEDIQIGGILIPKGTYLYGVASFQGQRLL  104 (200)
T ss_pred             EEEEEecceEEeCCC-EEEEEEcCceEECCEEeCCCCEEEEEEeeeccEEE
Confidence            778888887665332 33224668999999999999999998777777764


No 35 
>PF08492 SRP72:  SRP72 RNA-binding domain;  InterPro: IPR013699  The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=77.28  E-value=0.93  Score=28.05  Aligned_cols=12  Identities=25%  Similarity=0.365  Sum_probs=8.9

Q ss_pred             CcccCCcccCCC
Q 035560          345 DKFIPERFVGSN  356 (398)
Q Consensus       345 ~~f~PeRf~~~~  356 (398)
                      ..-||||||+..
T Consensus        41 ~~PDPERWLP~~   52 (59)
T PF08492_consen   41 KTPDPERWLPKR   52 (59)
T ss_pred             CCCCccccCchh
Confidence            345999999763


No 36 
>PF12273 RCR:  Chitin synthesis regulation, resistance to Congo red;  InterPro: IPR020999  RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 []. 
Probab=75.24  E-value=1.8  Score=32.25  Aligned_cols=17  Identities=24%  Similarity=0.432  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHHHHhhc
Q 035560            4 LVLAILFCLPIFLLYKC   20 (398)
Q Consensus         4 ~~~~~~~~~~~~~~~~~   20 (398)
                      ++++++++++++++..+
T Consensus         4 l~~iii~~i~l~~~~~~   20 (130)
T PF12273_consen    4 LFAIIIVAILLFLFLFY   20 (130)
T ss_pred             eHHHHHHHHHHHHHHHH
Confidence            34444444434333333


No 37 
>PF05393 Hum_adeno_E3A:  Human adenovirus early E3A glycoprotein;  InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=74.62  E-value=3.8  Score=27.34  Aligned_cols=28  Identities=29%  Similarity=0.394  Sum_probs=16.2

Q ss_pred             ChhHHHHHHHHHHHHHHhhcccccCCCC
Q 035560            1 MDLLVLAILFCLPIFLLYKCQISTWPSS   28 (398)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~   28 (398)
                      |+++.+..++++++++++.+..++++.|
T Consensus        35 m~~lvI~~iFil~VilwfvCC~kRkrsR   62 (94)
T PF05393_consen   35 MWFLVICGIFILLVILWFVCCKKRKRSR   62 (94)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            4555555565566666666666555443


No 38 
>PF15300 INT_SG_DDX_CT_C:  INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=73.46  E-value=4.5  Score=25.66  Aligned_cols=12  Identities=33%  Similarity=0.639  Sum_probs=10.6

Q ss_pred             HHHHHHHhhcCC
Q 035560          303 LNAVIKETMRIQ  314 (398)
Q Consensus       303 l~a~i~E~lRl~  314 (398)
                      ++.+|+|++|+-
T Consensus        43 v~~~IkEA~RFk   54 (65)
T PF15300_consen   43 VEMIIKEAARFK   54 (65)
T ss_pred             HHHHHHHHHHHH
Confidence            899999999974


No 39 
>PF05952 ComX:  Bacillus competence pheromone ComX;  InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible.  DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=58.77  E-value=10  Score=23.31  Aligned_cols=27  Identities=26%  Similarity=0.407  Sum_probs=19.6

Q ss_pred             HHHHHHhcChhHHHHHHHHHHHHhccc
Q 035560          274 MAMTLLMKNPEAMKKAQEEVRSVVKDK  300 (398)
Q Consensus       274 ~~l~~l~~~p~~~~~l~~Ei~~~~~~~  300 (398)
                      -.+.||.+||++.+++.+.=...++-+
T Consensus         4 ~iV~YLv~nPevl~kl~~g~asLIGv~   30 (57)
T PF05952_consen    4 EIVNYLVQNPEVLEKLKEGEASLIGVD   30 (57)
T ss_pred             HHHHHHHHChHHHHHHHcCCeeEecCC
Confidence            467899999999999987444444433


No 40 
>PF01102 Glycophorin_A:  Glycophorin A;  InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=56.16  E-value=6.9  Score=28.60  Aligned_cols=15  Identities=13%  Similarity=0.034  Sum_probs=3.1

Q ss_pred             hcccccCCCCCCCCC
Q 035560           19 KCQISTWPSSSPHNW   33 (398)
Q Consensus        19 ~~~~~~~~~~~~~~~   33 (398)
                      .|+.++++++.+...
T Consensus        85 ~y~irR~~Kk~~~~~   99 (122)
T PF01102_consen   85 SYCIRRLRKKSSSDV   99 (122)
T ss_dssp             HHHHHHHS-------
T ss_pred             HHHHHHHhccCCCCC
Confidence            333334444433333


No 41 
>PHA03049 IMV membrane protein; Provisional
Probab=50.37  E-value=31  Score=21.76  Aligned_cols=13  Identities=23%  Similarity=0.710  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHHHH
Q 035560            5 VLAILFCLPIFLL   17 (398)
Q Consensus         5 ~~~~~~~~~~~~~   17 (398)
                      ++++++|++++.+
T Consensus         5 ~~l~iICVaIi~l   17 (68)
T PHA03049          5 IILVIICVVIIGL   17 (68)
T ss_pred             HHHHHHHHHHHHH
Confidence            3334444443333


No 42 
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=49.23  E-value=14  Score=33.51  Aligned_cols=50  Identities=18%  Similarity=0.201  Sum_probs=37.7

Q ss_pred             HHHHHHHhhcCCCCCCCCccccceeeeecceEeCCCceEeeCCcccCCccc
Q 035560          303 LNAVIKETMRIQPATQFIPKATIESCVIDGYHTPAKTMVLVNDKFIPERFV  353 (398)
Q Consensus       303 l~a~i~E~lRl~p~~~~~~r~~~~d~~l~g~~ip~g~~v~~~~~f~PeRf~  353 (398)
                      +.|||.|+.-+.-. ..+.=+..+|+.++|..||+||.|.....|..+|-.
T Consensus       258 I~A~V~~~qtv~~G-~~vrlRLle~~~v~~~~ipkgt~l~g~~~~~g~R~~  307 (410)
T TIGR03779       258 IRACVHETQTVVDG-SAVKLRLLEPIQAGDLVIPKGTVLYGTAKIQGERLD  307 (410)
T ss_pred             eEEEEcCceEEecC-CEEEEEEcCceeeCCEEecCCCEEEEEeeeccceEE
Confidence            78888888877532 233234678999999999999999988666666653


No 43 
>PRK06789 flagellar motor switch protein; Validated
Probab=45.75  E-value=30  Score=22.74  Aligned_cols=43  Identities=14%  Similarity=0.203  Sum_probs=32.1

Q ss_pred             HHHHHhhcCCCCCC-CCccccce--eeeecceEeCCCceEeeCCcc
Q 035560          305 AVIKETMRIQPATQ-FIPKATIE--SCVIDGYHTPAKTMVLVNDKF  347 (398)
Q Consensus       305 a~i~E~lRl~p~~~-~~~r~~~~--d~~l~g~~ip~g~~v~~~~~f  347 (398)
                      .-++|-+.|.+... .+-|.+.+  |+.++|..|.+|..|.+++.|
T Consensus        20 ~~i~dll~L~~Gsvi~Ldk~~~epvdI~vNg~lia~GEvVvv~~~f   65 (74)
T PRK06789         20 KKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKNGKM   65 (74)
T ss_pred             eEHHHHhcCCCCCEEEeCCcCCCCEEEEECCEEEeEEeEEEECCEE
Confidence            34788899987665 56566654  466699999999999987443


No 44 
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=45.50  E-value=9.8  Score=22.89  Aligned_cols=11  Identities=45%  Similarity=0.930  Sum_probs=9.0

Q ss_pred             cccCCCCCCCc
Q 035560          367 IPFGSGRRICP  377 (398)
Q Consensus       367 ~~Fg~G~r~C~  377 (398)
                      -+||.|.|.|-
T Consensus        12 ~kfg~GsrsC~   22 (56)
T KOG3506|consen   12 RKFGQGSRSCR   22 (56)
T ss_pred             cccCCCCccee
Confidence            36999999985


No 45 
>PF05568 ASFV_J13L:  African swine fever virus J13L protein;  InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=43.72  E-value=14  Score=27.40  Aligned_cols=23  Identities=17%  Similarity=0.284  Sum_probs=9.9

Q ss_pred             hHHHHHHHHHHHHHHhhcccccC
Q 035560            3 LLVLAILFCLPIFLLYKCQISTW   25 (398)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~   25 (398)
                      ++++.++++++++++..+++..+
T Consensus        33 tILiaIvVliiiiivli~lcssR   55 (189)
T PF05568_consen   33 TILIAIVVLIIIIIVLIYLCSSR   55 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhh
Confidence            34444444444444434444333


No 46 
>PF13893 RRM_5:  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=39.96  E-value=83  Score=18.82  Aligned_cols=35  Identities=20%  Similarity=0.340  Sum_probs=24.9

Q ss_pred             HHHHHHhhCCeEEEecCCcc----EEEecCHHHHHHHHH
Q 035560           47 LWKISKQYGPVFSLRLGFRP----AIIISSAKLAKEAFK   81 (398)
Q Consensus        47 ~~~~~~kyG~v~~~~~~~~~----~vvv~~~~~~~~i~~   81 (398)
                      +.+.-.+||+|-.+.+....    .|-..+++.++....
T Consensus         1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~   39 (56)
T PF13893_consen    1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIE   39 (56)
T ss_dssp             HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHH
T ss_pred             ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence            34677899999998875532    555678888888775


No 47 
>PF15050 SCIMP:  SCIMP protein
Probab=38.80  E-value=57  Score=23.52  Aligned_cols=10  Identities=40%  Similarity=0.843  Sum_probs=4.6

Q ss_pred             CCCCCCCCCC
Q 035560           30 PHNWQPVPVR   39 (398)
Q Consensus        30 ~~~~ppgp~~   39 (398)
                      +..+||.|+.
T Consensus        66 ~~~LPpLPPR   75 (133)
T PF15050_consen   66 PVQLPPLPPR   75 (133)
T ss_pred             cCCCCCCCCC
Confidence            3344555543


No 48 
>PF09926 DUF2158:  Uncharacterized small protein (DUF2158);  InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function. 
Probab=38.55  E-value=36  Score=20.67  Aligned_cols=17  Identities=24%  Similarity=0.282  Sum_probs=15.4

Q ss_pred             hCCeEEEecCCccEEEe
Q 035560           54 YGPVFSLRLGFRPAIII   70 (398)
Q Consensus        54 yG~v~~~~~~~~~~vvv   70 (398)
                      -|++++++.||+.+.|.
T Consensus         3 ~GDvV~LKSGGp~MTV~   19 (53)
T PF09926_consen    3 IGDVVQLKSGGPRMTVT   19 (53)
T ss_pred             CCCEEEEccCCCCeEEE
Confidence            38999999999999887


No 49 
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=37.94  E-value=8.7  Score=29.75  Aligned_cols=36  Identities=25%  Similarity=0.524  Sum_probs=28.4

Q ss_pred             CcccCCcccCCCCCCCCCCccccccCCCCCCCcchh
Q 035560          345 DKFIPERFVGSNIDMGGQNFEFIPFGSGRRICPGIH  380 (398)
Q Consensus       345 ~~f~PeRf~~~~~~~~~~~~~~~~Fg~G~r~C~G~~  380 (398)
                      .+|||++|..-=-.+..+....+-|..|+=.|-|..
T Consensus        35 aeYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGaK   70 (185)
T COG2101          35 AEYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGAK   70 (185)
T ss_pred             CccCHhHCCeeEEEecCCcceEEEEecCcEEEeccC
Confidence            689999997543334446778999999999999964


No 50 
>PF05961 Chordopox_A13L:  Chordopoxvirus A13L protein;  InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=34.75  E-value=71  Score=20.35  Aligned_cols=17  Identities=29%  Similarity=0.389  Sum_probs=6.8

Q ss_pred             ChhHHHHHHHHHHHHHH
Q 035560            1 MDLLVLAILFCLPIFLL   17 (398)
Q Consensus         1 m~~~~~~~~~~~~~~~~   17 (398)
                      |..-++++.+|++++.+
T Consensus         1 MI~d~iLi~ICVaii~l   17 (68)
T PF05961_consen    1 MIGDFILIIICVAIIGL   17 (68)
T ss_pred             ChHHHHHHHHHHHHHHH
Confidence            33334444444443333


No 51 
>PF13625 Helicase_C_3:  Helicase conserved C-terminal domain
Probab=34.39  E-value=97  Score=22.91  Aligned_cols=40  Identities=13%  Similarity=0.106  Sum_probs=31.3

Q ss_pred             chHHHHHHHHHhhCCeEEEecCCccEEEecCHHHHHHHHHhc
Q 035560           42 KLAFYLWKISKQYGPVFSLRLGFRPAIIISSAKLAKEAFKTH   83 (398)
Q Consensus        42 ~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~~~~~~~i~~~~   83 (398)
                      +....+++|.++||.+--..  +...+...|++.++++.++.
T Consensus        75 ~v~~~i~~w~~~~g~v~l~~--~~~~l~~~d~~~l~~l~~~~  114 (129)
T PF13625_consen   75 NVEQSIEDWARRYGRVRLYK--GAYLLECDDPELLDELLADP  114 (129)
T ss_pred             HHHHHHHHHHHhcCCEEEec--CeEEEEECCHHHHHHHHhCh
Confidence            45688999999999865532  46678889999999998643


No 52 
>PF11808 DUF3329:  Domain of unknown function (DUF3329);  InterPro: IPR021766  This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=34.32  E-value=87  Score=21.49  Aligned_cols=22  Identities=5%  Similarity=0.049  Sum_probs=12.0

Q ss_pred             CCCCCCCCCcchHHHHHHHHHh
Q 035560           32 NWQPVPVRYQKLAFYLWKISKQ   53 (398)
Q Consensus        32 ~~ppgp~~~~~~~~~~~~~~~k   53 (398)
                      ..|.++..|++....+.++.++
T Consensus        62 ~pP~~~G~W~~if~~Lyr~qrr   83 (90)
T PF11808_consen   62 EPPEGSGIWGEIFDRLYRLQRR   83 (90)
T ss_pred             CCCCCCCcHHHHHHHHHHHHHH
Confidence            4455555566655555555444


No 53 
>PF15062 ARL6IP6:  Haemopoietic lineage transmembrane helix
Probab=33.56  E-value=87  Score=21.00  Aligned_cols=31  Identities=26%  Similarity=0.366  Sum_probs=20.2

Q ss_pred             HHHHHHHHHhhcccccCCCCCCCCCCCCCCC
Q 035560            9 LFCLPIFLLYKCQISTWPSSSPHNWQPVPVR   39 (398)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~ppgp~~   39 (398)
                      +++.++...+.|...+..+..|.-.||-|+.
T Consensus        30 ll~Gllv~~Ft~~ivYlDS~~PGv~PptPfS   60 (85)
T PF15062_consen   30 LLCGLLVCSFTWTIVYLDSSEPGVNPPTPFS   60 (85)
T ss_pred             HHHHHHHHHhhheeEEecccCCCCCCCCCCC
Confidence            3334455555666667777777777888884


No 54 
>PF12669 P12:  Virus attachment protein p12 family
Probab=30.92  E-value=28  Score=21.56  Aligned_cols=17  Identities=12%  Similarity=0.131  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHhhccc
Q 035560            6 LAILFCLPIFLLYKCQI   22 (398)
Q Consensus         6 ~~~~~~~~~~~~~~~~~   22 (398)
                      .+++++++++++++..+
T Consensus         5 ~~Ii~~~~~~v~~r~~~   21 (58)
T PF12669_consen    5 GIIILAAVAYVAIRKFI   21 (58)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333343334444


No 55 
>PF08285 DPM3:  Dolichol-phosphate mannosyltransferase subunit 3 (DPM3);  InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=29.61  E-value=86  Score=21.65  Aligned_cols=29  Identities=24%  Similarity=0.383  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHhcChhHHHHHHHHHHHHhc
Q 035560          270 VTIAMAMTLLMKNPEAMKKAQEEVRSVVK  298 (398)
Q Consensus       270 ~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~  298 (398)
                      .++.|-++..-..||..+.+++||+++..
T Consensus        54 ~~lgy~v~tFnDcpeA~~eL~~eI~eAK~   82 (91)
T PF08285_consen   54 FTLGYGVATFNDCPEAAKELQKEIKEAKA   82 (91)
T ss_pred             HHHHHhhhccCCCHHHHHHHHHHHHHHHH
Confidence            34555555556679999999999998853


No 56 
>PF14483 Cut8_M:  Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=29.17  E-value=96  Score=17.28  Aligned_cols=21  Identities=14%  Similarity=0.330  Sum_probs=13.7

Q ss_pred             HHHHHHHHHh-cChhHHHHHHH
Q 035560          271 TIAMAMTLLM-KNPEAMKKAQE  291 (398)
Q Consensus       271 ~l~~~l~~l~-~~p~~~~~l~~  291 (398)
                      .+...+..++ +|||+++.+++
T Consensus        14 qL~~lL~~l~~~HPei~~~i~~   35 (38)
T PF14483_consen   14 QLQSLLQSLCERHPEIQQEIRS   35 (38)
T ss_dssp             HHHHHHHHHHHHSTHHHHHHHT
T ss_pred             HHHHHHHHHHHhChhHHHHHHh
Confidence            3444555555 79998888764


No 57 
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=28.28  E-value=14  Score=29.08  Aligned_cols=35  Identities=23%  Similarity=0.566  Sum_probs=27.2

Q ss_pred             CcccCCcccCCCCCCCCCCccccccCCCCCCCcch
Q 035560          345 DKFIPERFVGSNIDMGGQNFEFIPFGSGRRICPGI  379 (398)
Q Consensus       345 ~~f~PeRf~~~~~~~~~~~~~~~~Fg~G~r~C~G~  379 (398)
                      .+|+|+||..--.....+....+-|+.|+=.|-|-
T Consensus        29 ~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGa   63 (174)
T cd04518          29 AEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTGA   63 (174)
T ss_pred             cEECCCcCcEEEEEccCCcEEEEEECCCeEEEEcc
Confidence            68999999754333444567899999999999986


No 58 
>PF14824 Sirohm_synth_M:  Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=27.62  E-value=86  Score=16.44  Aligned_cols=15  Identities=13%  Similarity=0.406  Sum_probs=11.5

Q ss_pred             ChhHHHHHHHHHHHH
Q 035560          282 NPEAMKKAQEEVRSV  296 (398)
Q Consensus       282 ~p~~~~~l~~Ei~~~  296 (398)
                      .|.+-.++|+||++.
T Consensus        15 sP~la~~iR~~ie~~   29 (30)
T PF14824_consen   15 SPRLARLIRKEIERL   29 (30)
T ss_dssp             -HHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHh
Confidence            477888899998865


No 59 
>PHA02902 putative IMV membrane protein; Provisional
Probab=27.49  E-value=1.7e+02  Score=18.49  Aligned_cols=12  Identities=17%  Similarity=0.332  Sum_probs=4.6

Q ss_pred             HHHHHHHHhhcc
Q 035560           10 FCLPIFLLYKCQ   21 (398)
Q Consensus        10 ~~~~~~~~~~~~   21 (398)
                      ++++++++|..+
T Consensus        13 v~Ivclliya~Y   24 (70)
T PHA02902         13 VIIFCLLIYAAY   24 (70)
T ss_pred             HHHHHHHHHHHH
Confidence            333334444333


No 60 
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=27.39  E-value=4.6e+02  Score=24.73  Aligned_cols=38  Identities=18%  Similarity=0.198  Sum_probs=20.6

Q ss_pred             cchHHHHHHHHH-hhCCeEEEecCCccEEE-ecCHHHHHH
Q 035560           41 QKLAFYLWKISK-QYGPVFSLRLGFRPAII-ISSAKLAKE   78 (398)
Q Consensus        41 ~~~~~~~~~~~~-kyG~v~~~~~~~~~~vv-v~~~~~~~~   78 (398)
                      ..+...++-..+ +||.|++-.+-++.+-| +..++..+.
T Consensus       209 l~pl~l~eli~~Grfg~V~KaqL~~~~VAVKifp~~~kqs  248 (534)
T KOG3653|consen  209 LDPLQLLELIGRGRFGCVWKAQLDNRLVAVKIFPEQEKQS  248 (534)
T ss_pred             CCchhhHHHhhcCccceeehhhccCceeEEEecCHHHHHH
Confidence            334444443333 67888887777766533 444444433


No 61 
>PRK05933 type III secretion system protein; Validated
Probab=26.92  E-value=83  Score=27.47  Aligned_cols=45  Identities=9%  Similarity=0.208  Sum_probs=35.2

Q ss_pred             HHHHHHHhhcCCCCCC-CCcccc---ceeeeecceEeCCCceEeeCCcc
Q 035560          303 LNAVIKETMRIQPATQ-FIPKAT---IESCVIDGYHTPAKTMVLVNDKF  347 (398)
Q Consensus       303 l~a~i~E~lRl~p~~~-~~~r~~---~~d~~l~g~~ip~g~~v~~~~~f  347 (398)
                      .+.-|+|.++|.+... .+-|.+   .-|+.++|..|.+|.+|.+++.|
T Consensus       317 T~l~IkELL~L~~GSVIeLDk~a~GEpVDI~VNGrLIARGEVVVVdd~f  365 (372)
T PRK05933        317 YSLSVGEFLKLGPGSILQFDGVHPTLGVDIILNGAKVGRGEIIALGDVL  365 (372)
T ss_pred             ccccHHHHhccCCCCEEEeCCcCCCCCEEEEECCEEEeeeeEEEECCee
Confidence            6788999999998766 443443   35688899999999999987443


No 62 
>COG4471 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.66  E-value=2.1e+02  Score=19.49  Aligned_cols=36  Identities=6%  Similarity=0.087  Sum_probs=27.4

Q ss_pred             HHHHHHhhCCeEEEecCCccEEEecCHHHHHHHHHh
Q 035560           47 LWKISKQYGPVFSLRLGFRPAIIISSAKLAKEAFKT   82 (398)
Q Consensus        47 ~~~~~~kyG~v~~~~~~~~~~vvv~~~~~~~~i~~~   82 (398)
                      ..+..+|||+|....--.+-.+.-++-+.+.+++.+
T Consensus        18 ~aRqLrkfG~v~Y~Skk~kY~vlYvn~~~ve~~~~k   53 (90)
T COG4471          18 DARQLRKFGDVHYVSKKSKYVVLYVNEQDVEQIVEK   53 (90)
T ss_pred             hhHHHHhcCCEEEEecceeEEEEEECHHHHHHHHHH
Confidence            445677899999886544566777899999999863


No 63 
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=26.08  E-value=2.5e+02  Score=20.03  Aligned_cols=38  Identities=18%  Similarity=0.313  Sum_probs=30.1

Q ss_pred             HHHHHHHHHhhCCeEEEecCC------ccEEEecCHHHHHHHHH
Q 035560           44 AFYLWKISKQYGPVFSLRLGF------RPAIIISSAKLAKEAFK   81 (398)
Q Consensus        44 ~~~~~~~~~kyG~v~~~~~~~------~~~vvv~~~~~~~~i~~   81 (398)
                      ..-+.++.-+||+|..+++|.      .-+||-.|-..++....
T Consensus        32 seemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~d   75 (124)
T KOG0114|consen   32 SEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACD   75 (124)
T ss_pred             HHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHH
Confidence            466777888999999999984      34677788888887775


No 64 
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=25.20  E-value=50  Score=20.34  Aligned_cols=8  Identities=38%  Similarity=0.762  Sum_probs=3.0

Q ss_pred             ChhHHHHH
Q 035560            1 MDLLVLAI    8 (398)
Q Consensus         1 m~~~~~~~    8 (398)
                      |+++.+++
T Consensus         1 m~~l~~Li    8 (58)
T COG3197           1 MEILYILI    8 (58)
T ss_pred             CceeeeHH
Confidence            33333333


No 65 
>PF15183 MRAP:  Melanocortin-2 receptor accessory protein family
Probab=25.18  E-value=2e+02  Score=19.31  Aligned_cols=12  Identities=17%  Similarity=0.163  Sum_probs=6.2

Q ss_pred             CCCCCCCCCCCC
Q 035560           28 SSPHNWQPVPVR   39 (398)
Q Consensus        28 ~~~~~~ppgp~~   39 (398)
                      ..+...+++|+.
T Consensus        70 ~~~k~~~~~p~~   81 (90)
T PF15183_consen   70 NSEKHHPMCPWS   81 (90)
T ss_pred             CccccCCCCCcc
Confidence            344455666653


No 66 
>PRK00394 transcription factor; Reviewed
Probab=25.07  E-value=38  Score=26.90  Aligned_cols=35  Identities=26%  Similarity=0.572  Sum_probs=27.1

Q ss_pred             CcccCCcccCCCCCCCCCCccccccCCCCCCCcch
Q 035560          345 DKFIPERFVGSNIDMGGQNFEFIPFGSGRRICPGI  379 (398)
Q Consensus       345 ~~f~PeRf~~~~~~~~~~~~~~~~Fg~G~r~C~G~  379 (398)
                      .+|+||||..--.....+....+-|..|+=.|-|-
T Consensus        28 ~eYePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tGa   62 (179)
T PRK00394         28 AEYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTGA   62 (179)
T ss_pred             ceeCcccCceEEEEecCCceEEEEEcCCcEEEEcc
Confidence            68999999754333444567899999999999993


No 67 
>PF13993 YccJ:  YccJ-like protein
Probab=24.27  E-value=1e+02  Score=19.12  Aligned_cols=31  Identities=29%  Similarity=0.319  Sum_probs=23.3

Q ss_pred             hhcccchHHHHHHHHHHHhcChhHH-HHHHHH
Q 035560          262 IGTTDTSKVTIAMAMTLLMKNPEAM-KKAQEE  292 (398)
Q Consensus       262 ~ag~~tt~~~l~~~l~~l~~~p~~~-~~l~~E  292 (398)
                      ||..-.||.-+.-++++|+++.|.+ +++-+|
T Consensus         8 WA~~ReTS~EIAeAIFElA~~dE~lAekIWee   39 (69)
T PF13993_consen    8 WANVRETSIEIAEAIFELANNDEVLAEKIWEE   39 (69)
T ss_pred             HHHHhcCCHHHHHHHHHHhcccHHHHHHHHHc
Confidence            5667778889999999999988754 344443


No 68 
>PF05727 UPF0228:  Uncharacterised protein family (UPF0228);  InterPro: IPR008887 This small family of proteins is currently restricted to Methanosarcina species. Members of this family are about 200 residues in length, except for Q8TMK1 from SWISSPROT that has two copies of this region. Although the function of this region is unknown the pattern of conservation suggests that this may be an enzyme, including multiple conserved aspartate and glutamate residues. The most conserved motif in these proteins is NEL/MEXNE/D, where X can be any amino acid, and is found at the C terminus of these proteins.
Probab=23.79  E-value=58  Score=23.76  Aligned_cols=51  Identities=16%  Similarity=0.249  Sum_probs=34.0

Q ss_pred             EeCCCceEeeC--CcccCC-cccC----CCCCCCCCCccccccCCCCCC-CcchhhhHH
Q 035560          334 HTPAKTMVLVN--DKFIPE-RFVG----SNIDMGGQNFEFIPFGSGRRI-CPGIHMAVP  384 (398)
Q Consensus       334 ~ip~g~~v~~~--~~f~Pe-Rf~~----~~~~~~~~~~~~~~Fg~G~r~-C~G~~la~~  384 (398)
                      .|.||.--+++  +++.++ -|+.    .+...++-.-.++.||.|++. |+++.=|..
T Consensus        48 ~ikKgdyyiI~vSEqai~d~~FL~iL~K~nLqvKKfVwCyI~f~dgs~nywIpe~DAir  106 (127)
T PF05727_consen   48 VIKKGDYYIIMVSEQAIEDKNFLEILEKYNLQVKKFVWCYIRFGDGSKNYWIPEKDAIR  106 (127)
T ss_pred             hcccCCeEEEEeehhhcCchhHHHHHHhcCcceeEEEEEEEEcCCCCcccccchHHHHH
Confidence            47777776665  555544 6663    223344445688999999998 999876653


No 69 
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=23.28  E-value=86  Score=18.88  Aligned_cols=8  Identities=38%  Similarity=0.808  Sum_probs=3.3

Q ss_pred             ChhHHHHH
Q 035560            1 MDLLVLAI    8 (398)
Q Consensus         1 m~~~~~~~    8 (398)
                      |+.+.+++
T Consensus         1 M~il~~LI    8 (51)
T TIGR00847         1 MEILTILI    8 (51)
T ss_pred             CchHHHHH
Confidence            44444433


No 70 
>PRK02302 hypothetical protein; Provisional
Probab=23.12  E-value=2.6e+02  Score=19.24  Aligned_cols=33  Identities=9%  Similarity=0.155  Sum_probs=24.9

Q ss_pred             HHHHhhCCeEEEecCCccEEEecCHHHHHHHHH
Q 035560           49 KISKQYGPVFSLRLGFRPAIIISSAKLAKEAFK   81 (398)
Q Consensus        49 ~~~~kyG~v~~~~~~~~~~vvv~~~~~~~~i~~   81 (398)
                      +-.+|||+|..+.--.+-.++=+|.+.+.++..
T Consensus        21 r~LrkfG~I~Y~Skk~kYvvlYvn~~~~e~~~~   53 (89)
T PRK02302         21 RKLSKYGDIVYHSKRSRYLVLYVNKEDVEQKLE   53 (89)
T ss_pred             HHHhhcCcEEEEeccccEEEEEECHHHHHHHHH
Confidence            455789999888654455666689999988886


No 71 
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=22.53  E-value=57  Score=25.76  Aligned_cols=35  Identities=23%  Similarity=0.470  Sum_probs=26.8

Q ss_pred             CcccCCcccCCCCCCCCCCccccccCCCCCCCcch
Q 035560          345 DKFIPERFVGSNIDMGGQNFEFIPFGSGRRICPGI  379 (398)
Q Consensus       345 ~~f~PeRf~~~~~~~~~~~~~~~~Fg~G~r~C~G~  379 (398)
                      .+|+||||..--.....+....+-|+.|+=.|-|-
T Consensus        29 ~~YePe~fpgli~R~~~P~~t~lIf~sGKivitGa   63 (174)
T cd00652          29 AEYNPKRFPGVIMRLREPKTTALIFSSGKMVITGA   63 (174)
T ss_pred             cEECCCccceEEEEcCCCcEEEEEECCCEEEEEec
Confidence            68999999754333344667889999999999983


No 72 
>PF14129 DUF4296:  Domain of unknown function (DUF4296)
Probab=21.67  E-value=2.7e+02  Score=18.87  Aligned_cols=51  Identities=16%  Similarity=0.172  Sum_probs=41.4

Q ss_pred             CCHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcChhHHHHHHHHHHHHhc
Q 035560          248 LTLDAVKAAIMEIFIGTTDTSKVTIAMAMTLLMKNPEAMKKAQEEVRSVVK  298 (398)
Q Consensus       248 l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~  298 (398)
                      ...+.........++-=+..++....-.+.+.+.||+..+++.+.+..-+.
T Consensus        29 ~~~~~~~~~~~~~I~kKy~Ids~~f~~S~~YY~~~p~~~~~Iy~~V~~rL~   79 (87)
T PF14129_consen   29 DSSDDNMIAYYQYIFKKYGIDSAQFDSSMVYYSRNPEEYEKIYDKVIERLE   79 (87)
T ss_pred             ccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            345566666778888888999999999999999999999999887765543


No 73 
>PLN00062 TATA-box-binding protein; Provisional
Probab=21.60  E-value=22  Score=28.18  Aligned_cols=35  Identities=23%  Similarity=0.547  Sum_probs=26.8

Q ss_pred             CcccCCcccCCCCCCCCCCccccccCCCCCCCcch
Q 035560          345 DKFIPERFVGSNIDMGGQNFEFIPFGSGRRICPGI  379 (398)
Q Consensus       345 ~~f~PeRf~~~~~~~~~~~~~~~~Fg~G~r~C~G~  379 (398)
                      .+|+||+|..--.....+....+-|+.|+=.|-|.
T Consensus        29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGa   63 (179)
T PLN00062         29 AEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA   63 (179)
T ss_pred             CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEec
Confidence            68999999754333344566889999999999985


Done!