BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035561
(979 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 172 bits (436), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 143/508 (28%), Positives = 232/508 (45%), Gaps = 69/508 (13%)
Query: 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAI 508
N + KD E EE+ EVV FL++PS F +GAR P+G+L+VG GTGKT LA A+
Sbjct: 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAV 69
Query: 509 AAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFI 568
A EA VP ++ + L+VG A+ VR+LF A+ AP I+F+++ D RG +
Sbjct: 70 AGEANVPFFHISGSDF-VELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128
Query: 569 HTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQ 628
+ E +NQLLVE+DGF+ ++G+++MA T +D AL RPGR D+ + P
Sbjct: 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDM 188
Query: 629 SEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSKFLDTD 688
R+KIL I T ++ L + V+ +A++T G+ D +
Sbjct: 189 LGRKKILEI---HTRNKPLAEDVNLEIIAKRTP------------GFVGA-------DLE 226
Query: 689 ELMSYCGWFATFSGVVPKWFRKTKIVKKISRMLVDHLGLTLTKEDLQNVVDLMEPYGQIS 748
L++ A G + KI K +D + ++ L
Sbjct: 227 NLVNEAALLAAREG-------RDKITMKDFEEAIDRVIAGPARKSL-------------- 265
Query: 749 NGIELLTPPLDWTRETKLPHAVWAAGRGLIALLLPNFDTVDNLWLEPCAWEGIGCTKITK 808
L++P K A AG +++ ++PN + V + + P ++ +G T
Sbjct: 266 ----LISPA------EKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLP 315
Query: 809 AEKEGSMSGNPESRSYLEKKLVFCFGSYAAAQLLLPFGEENLLSSSEIKQAQEIATRMVL 868
E + + SR+ L KL G AA +++ FG+ ++++I++A EIA MV
Sbjct: 316 EEDKYLV-----SRNELLDKLTALLGGRAAEEVV--FGDVTSGAANDIERATEIARNMVC 368
Query: 869 QYGW----GPDDXXXXXXXXXXXXXXXXXXXHEYEMATK----VEKVYDLAYYKAKEMLQ 920
Q G GP + E+A+K V+K+ Y +AKE+++
Sbjct: 369 QLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIR 428
Query: 921 KNRXXXXXXXXXXXXYEILTGKDLERLM 948
K R E + G +L R++
Sbjct: 429 KYRKQLDNIVEILLEKETIEGDELRRIL 456
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 170 bits (430), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 142/508 (27%), Positives = 231/508 (45%), Gaps = 69/508 (13%)
Query: 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAI 508
N + KD E EE+ EVV FL++PS F +GAR P+G+L+VG GTG T LA A+
Sbjct: 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAV 69
Query: 509 AAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFI 568
A EA VP ++ + L+VG A+ VR+LF A+ AP I+F+++ D RG +
Sbjct: 70 AGEANVPFFHISGSDF-VELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128
Query: 569 HTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQ 628
+ E +NQLLVE+DGF+ ++G+++MA T +D AL RPGR D+ + P
Sbjct: 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDM 188
Query: 629 SEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSKFLDTD 688
R+KIL I T ++ L + V+ +A++T G+ D +
Sbjct: 189 LGRKKILEI---HTRNKPLAEDVNLEIIAKRTP------------GFVGA-------DLE 226
Query: 689 ELMSYCGWFATFSGVVPKWFRKTKIVKKISRMLVDHLGLTLTKEDLQNVVDLMEPYGQIS 748
L++ A G + KI K +D + ++ L
Sbjct: 227 NLVNEAALLAAREG-------RDKITMKDFEEAIDRVIAGPARKSL-------------- 265
Query: 749 NGIELLTPPLDWTRETKLPHAVWAAGRGLIALLLPNFDTVDNLWLEPCAWEGIGCTKITK 808
L++P K A AG +++ ++PN + V + + P ++ +G T
Sbjct: 266 ----LISPA------EKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLP 315
Query: 809 AEKEGSMSGNPESRSYLEKKLVFCFGSYAAAQLLLPFGEENLLSSSEIKQAQEIATRMVL 868
E + + SR+ L KL G AA +++ FG+ ++++I++A EIA MV
Sbjct: 316 EEDKYLV-----SRNELLDKLTALLGGRAAEEVV--FGDVTSGAANDIERATEIARNMVC 368
Query: 869 QYGW----GPDDXXXXXXXXXXXXXXXXXXXHEYEMATK----VEKVYDLAYYKAKEMLQ 920
Q G GP + E+A+K V+K+ Y +AKE+++
Sbjct: 369 QLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIR 428
Query: 921 KNRXXXXXXXXXXXXYEILTGKDLERLM 948
K R E + G +L R++
Sbjct: 429 KYRKQLDNIVEILLEKETIEGDELRRIL 456
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 166 bits (420), Expect = 5e-41, Method: Composition-based stats.
Identities = 98/228 (42%), Positives = 132/228 (57%), Gaps = 8/228 (3%)
Query: 428 RKKKAGIDPIKNAFERMKR-----VKNPPIPLKDFASVESMREEINEVVAFLQNPSAFQE 482
R +AG P +AF K + P + KD A E +EE+ E+V FL+NPS F E
Sbjct: 10 RNGRAG--PSDSAFSFTKSRARVLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHE 67
Query: 483 MGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQ 542
MGAR P+GVL+VG G GKT LA A+A EARVP + + ++VG A+ VR+LF+
Sbjct: 68 MGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF-VEMFVGVGAARVRDLFE 126
Query: 543 TARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTR 602
TA+ AP I+F+++ D RG + + E +NQLLVE+DGFEK +V+MA T
Sbjct: 127 TAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATN 186
Query: 603 NIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDL 650
+D AL RPGR DR + P RE+ILRI A+ E +DL
Sbjct: 187 RPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDL 234
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 164 bits (415), Expect = 2e-40, Method: Composition-based stats.
Identities = 91/201 (45%), Positives = 122/201 (60%), Gaps = 1/201 (0%)
Query: 450 PPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIA 509
P + KD A E +EE+ E+V FL+NPS F EMGAR P+GVL+VG G GKT LA A+A
Sbjct: 11 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 70
Query: 510 AEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIH 569
EARVP + + ++VG A+ VR+LF+TA+ AP I+F+++ D RG +
Sbjct: 71 GEARVPFITASGSDF-VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG 129
Query: 570 TKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQS 629
+ E +NQLLVE+DGFEK +V+MA T +D AL RPGR DR + P
Sbjct: 130 GGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVK 189
Query: 630 EREKILRIAAQETMDEELIDL 650
RE+ILRI A+ E +DL
Sbjct: 190 GREQILRIHARGKPLAEDVDL 210
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 163 bits (413), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 132/229 (57%), Gaps = 8/229 (3%)
Query: 428 RKKKAGIDPIKNAFERMKR-----VKNPPIPLKDFASVESMREEINEVVAFLQNPSAFQE 482
R +AG P +AF K + P + KD A E +EE+ E+V FL+NPS F E
Sbjct: 10 RNGRAG--PSDSAFSFTKSRARVLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHE 67
Query: 483 MGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQ 542
MGAR P+GVL+VG G GKT LA A+A EARVP + + ++VG A+ VR+LF+
Sbjct: 68 MGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF-VEMFVGVGAARVRDLFE 126
Query: 543 TARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTR 602
TA+ AP I+F+++ D RG + + E +NQLLVE+DGFEK +V+MA T
Sbjct: 127 TAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATN 186
Query: 603 NIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLV 651
+D AL RPGR DR + P RE+ILRI A+ E +DL
Sbjct: 187 RPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLA 235
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 163 bits (412), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 132/229 (57%), Gaps = 8/229 (3%)
Query: 428 RKKKAGIDPIKNAFERMKR-----VKNPPIPLKDFASVESMREEINEVVAFLQNPSAFQE 482
R +AG P +AF K + P + KD A E +EE+ E+V FL+NPS F E
Sbjct: 1 RNGRAG--PSDSAFSFTKSRARVLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHE 58
Query: 483 MGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQ 542
MGAR P+GVL+VG G GKT LA A+A EARVP + + ++VG A+ VR+LF+
Sbjct: 59 MGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF-VEMFVGVGAARVRDLFE 117
Query: 543 TARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTR 602
TA+ AP I+F+++ D RG + + E +NQLLVE+DGFEK +V+MA T
Sbjct: 118 TAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATN 177
Query: 603 NIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLV 651
+D AL RPGR DR + P RE+ILRI A+ E +DL
Sbjct: 178 RPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLA 226
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 113/182 (62%), Gaps = 1/182 (0%)
Query: 456 DFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVP 515
D A + +EE+ E+V +L+ PS FQ++G + P+GVL+VG GTGKT LA AIA EA+VP
Sbjct: 13 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP 72
Query: 516 VVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDH 575
+ + ++VG AS VR++F+ A+ AP IIF+++ D RG + +
Sbjct: 73 FFTISGSDF-VEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDER 131
Query: 576 ESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKIL 635
E +NQ+LVE+DGFE +G++++A T +D AL RPGR DR + P RE+IL
Sbjct: 132 EQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQIL 191
Query: 636 RI 637
++
Sbjct: 192 KV 193
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 137 bits (344), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 130/221 (58%), Gaps = 6/221 (2%)
Query: 450 PPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIA 509
P + KD A E +EE+ E+V FL+ P + +GA+ P+GVL+VG GTGKT LA A+A
Sbjct: 6 PNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVA 65
Query: 510 AEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQ-FI 568
EA VP ++ ++VG AS VR+LF+TA+ AP IIF+++ D R +
Sbjct: 66 GEAHVPFFSMGGSSF-IEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGV 124
Query: 569 HTKQQDHESFINQLLVELDGFEKQDG-VVLMATTRNIKQIDEALQRPGRMDRIFNLQKPT 627
+ + E +NQLL E+DGF ++ V+++A T + +D AL RPGR DR + KP
Sbjct: 125 VSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPD 184
Query: 628 QSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIEL 668
+ R +IL++ + +L + V+ ++VA+ TA L +L
Sbjct: 185 FNGRVEILKVHIKGV---KLANDVNLQEVAKLTAGLAGADL 222
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 105/185 (56%), Gaps = 2/185 (1%)
Query: 452 IPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAE 511
+ KD A + + E+ E V +L++P F ++GA+ P+G L++G G GKT LA A+A E
Sbjct: 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62
Query: 512 ARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHT- 570
A+VP + + E + G A+ VR LF+ AR AP I+++++ D R +
Sbjct: 63 AQVPFLAMAGAEF-VEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGF 121
Query: 571 KQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSE 630
+ E +NQLLVE+DG D V+++A+T +D AL RPGR+DR + PT E
Sbjct: 122 SNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQE 181
Query: 631 REKIL 635
R +I
Sbjct: 182 RREIF 186
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 118/210 (56%), Gaps = 2/210 (0%)
Query: 450 PPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAI 508
P + +D +E +EI EVV L++P F+++G P+G+L+ G GTGKT LA A+
Sbjct: 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAV 71
Query: 509 AAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFI 568
A E + V EL ++G+ AS V+++F+ A++ AP IIF+++ D A R +
Sbjct: 72 ATETNATFIRVVGSEL-VKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDAL 130
Query: 569 HTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQ 628
++ + + QLL E+DGF+ + V ++ T +D A+ RPGR DRI + P +
Sbjct: 131 TGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDE 190
Query: 629 SEREKILRIAAQETMDEELIDLVDWRKVAE 658
R +IL+I ++ E ++L + K+ E
Sbjct: 191 KGRLEILKIHTRKMNLAEDVNLEEIAKMTE 220
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 112/205 (54%), Gaps = 2/205 (0%)
Query: 447 VKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLA 505
V+ P + +D +E ++ E+ E+V + +++P F + G +GVL G G GKT LA
Sbjct: 7 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66
Query: 506 LAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRG 565
AIA E + ++++ EL +W G+S +NVRE+F AR AP ++F ++ D A RG
Sbjct: 67 KAIANECQANFISIKGPEL-LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 125
Query: 566 QFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQK 625
I + INQ+L E+DG + V ++ T ID A+ RPGR+D++ +
Sbjct: 126 GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 185
Query: 626 PTQSEREKILRIAAQETMDEELIDL 650
P + R IL+ +++ + +DL
Sbjct: 186 PDEKSRVAILKANLRKSPVAKDVDL 210
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 139/257 (54%), Gaps = 15/257 (5%)
Query: 434 IDPIKNAFE-RMKRVKNPPIPLKDFASVESMREEINEVVAFLQNP----SAFQEMGARAP 488
+D + + F+ R+K ++ P + ++ V + ++I E+V + P F++MG RAP
Sbjct: 156 LDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAP 215
Query: 489 RGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLA 548
+G L+ G GTGKT LA A AA+ + + A +L +++G+ A VR+ F A++ A
Sbjct: 216 KGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQL-VQMYIGEGAKLVRDAFALAKEKA 274
Query: 549 PVIIFVEDFDLFAGVRGQFIHTKQQDHE--SFINQLLVELDGFEKQDGVVLMATTRNIKQ 606
P IIF+++ D R F K D E + +LL +LDGF D V ++A T +
Sbjct: 275 PTIIFIDELDAIGTKR--FDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV 332
Query: 607 IDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQE-TMDEELIDLVDWRKVAEKTALLRP 665
+D AL R GR+DR P++ R +IL+I +++ T D++ ++W+++A T
Sbjct: 333 LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDD----INWQELARSTDEFNG 388
Query: 666 IELKLVPVALEGSAFRS 682
+LK V V A R+
Sbjct: 389 AQLKAVTVEAGMIALRN 405
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 112/205 (54%), Gaps = 2/205 (0%)
Query: 447 VKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLA 505
V+ P + +D +E ++ E+ E+V + +++P F + G +GVL G G GKT LA
Sbjct: 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 528
Query: 506 LAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRG 565
AIA E + ++++ EL +W G+S +NVRE+F AR AP ++F ++ D A RG
Sbjct: 529 KAIANECQANFISIKGPEL-LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 566 QFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQK 625
I + INQ+L E+DG + V ++ T ID A+ RPGR+D++ +
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647
Query: 626 PTQSEREKILRIAAQETMDEELIDL 650
P + R IL+ +++ + +DL
Sbjct: 648 PDEKSRVAILKANLRKSPVAKDVDL 672
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 8/206 (3%)
Query: 456 DFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARV 514
D +I E+V L++P+ F+ +G + PRG+L+ G GTGKT +A A+A E
Sbjct: 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264
Query: 515 PVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQD 574
+ E+ + L G+S SN+R+ F+ A AP IIF+++ D A R + T +
Sbjct: 265 FFFLINGPEIMSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK---THGEV 320
Query: 575 HESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKI 634
++QLL +DG +++ V++MA T ID AL+R GR DR ++ P + R +I
Sbjct: 321 ERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 380
Query: 635 LRIAAQETMDEELIDLVDWRKVAEKT 660
L+I T + +L D VD +VA +T
Sbjct: 381 LQI---HTKNMKLADDVDLEQVANET 403
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 112/205 (54%), Gaps = 2/205 (0%)
Query: 447 VKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLA 505
V+ P + +D +E ++ E+ E+V + +++P F + G +GVL G G GKT LA
Sbjct: 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 528
Query: 506 LAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRG 565
AIA E + ++++ EL +W G+S +NVRE+F AR AP ++F ++ D A RG
Sbjct: 529 KAIANECQANFISIKGPEL-LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 566 QFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQK 625
I + INQ+L E+DG + V ++ T ID A+ RPGR+D++ +
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647
Query: 626 PTQSEREKILRIAAQETMDEELIDL 650
P + R IL+ +++ + +DL
Sbjct: 648 PDEKSRVAILKANLRKSPVAKDVDL 672
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 8/206 (3%)
Query: 456 DFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARV 514
D +I E+V L++P+ F+ +G + PRG+L+ G GTGKT +A A+A E
Sbjct: 205 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264
Query: 515 PVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQD 574
+ E+ + L G+S SN+R+ F+ A AP IIF+++ D A R + T +
Sbjct: 265 FFFLINGPEIMSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK---THGEV 320
Query: 575 HESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKI 634
++QLL +DG +++ V++MA T ID AL+R GR DR ++ P + R +I
Sbjct: 321 ERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 380
Query: 635 LRIAAQETMDEELIDLVDWRKVAEKT 660
L+I T + +L D VD +VA +T
Sbjct: 381 LQI---HTKNMKLADDVDLEQVANET 403
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 109/193 (56%), Gaps = 15/193 (7%)
Query: 450 PPIPLKDFASVESMREEIN-EVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAI 508
P + D ++E +REE+ ++A ++NP F+ +G P GVL+ G G GKT LA A+
Sbjct: 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAV 64
Query: 509 AAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFI 568
A E+ + ++V+ EL ++VG+S VR++FQ A++ AP +IF ++ D
Sbjct: 65 ANESGLNFISVKGPEL-LNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALC------- 116
Query: 569 HTKQQDHES-----FINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNL 623
++ D E+ +NQLL E+DG E + V +MA T ID A+ RPGR+D+ +
Sbjct: 117 -PRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFV 175
Query: 624 QKPTQSEREKILR 636
P ++R IL+
Sbjct: 176 GLPPPADRLAILK 188
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 108/196 (55%), Gaps = 5/196 (2%)
Query: 465 EEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQE 523
+EI EV+ +++P F+ +G P+GV++ G GTGKT LA A+A + V E
Sbjct: 158 KEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAE 217
Query: 524 LEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLL 583
L ++G+ + VRELF AR+ AP IIF+++ D R + + + + +LL
Sbjct: 218 L-VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELL 276
Query: 584 VELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETM 643
+LDGFE + ++ T + +D AL RPGR+DR P+ + R +ILRI +++
Sbjct: 277 NQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKM- 335
Query: 644 DEELIDLVDWRKVAEK 659
L ++ RKVAEK
Sbjct: 336 --NLTRGINLRKVAEK 349
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 8/206 (3%)
Query: 456 DFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARV 514
D +I E+V L++P+ F+ +G + PRG+L+ G GTGKT +A A+A E
Sbjct: 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264
Query: 515 PVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQD 574
+ E+ + L G+S SN+R+ F+ A AP IIF+++ D A R + T +
Sbjct: 265 FFFLINGPEIMSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK---THGEV 320
Query: 575 HESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKI 634
++QLL +DG +++ V++MA T ID AL+R GR DR ++ P + R +I
Sbjct: 321 ERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 380
Query: 635 LRIAAQETMDEELIDLVDWRKVAEKT 660
L+I T + +L D VD +VA +T
Sbjct: 381 LQI---HTKNMKLADDVDLEQVANET 403
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 106/195 (54%), Gaps = 2/195 (1%)
Query: 444 MKRVKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKT 502
MK K+P D +ES +EI E V L +P ++EMG + P+GV++ G GTGKT
Sbjct: 171 MKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKT 230
Query: 503 SLALAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAG 562
LA A+A + + + EL ++G R++F+ A + AP I+F+++ D
Sbjct: 231 LLAKAVANQTSATFLRIVGSEL-IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGT 289
Query: 563 VRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFN 622
R +++ + + +LL +LDGF+ + V ++ T I+ +D AL RPGR+DR
Sbjct: 290 KRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKIL 349
Query: 623 LQKPTQSEREKILRI 637
+ P S ++KIL I
Sbjct: 350 FENPDLSTKKKILGI 364
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 8/206 (3%)
Query: 456 DFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARV 514
D +I E+V L++P+ F+ +G + PRG+L+ G GTGKT +A A+A E
Sbjct: 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264
Query: 515 PVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQD 574
+ E+ + L G+S SN+R+ F+ A AP IIF+++ D A R + T +
Sbjct: 265 FFFLINGPEIMSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK---THGEV 320
Query: 575 HESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKI 634
++QLL +DG +++ V++MA T ID AL+R GR DR ++ P + R +I
Sbjct: 321 ERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 380
Query: 635 LRIAAQETMDEELIDLVDWRKVAEKT 660
L+I T + +L D VD +VA +T
Sbjct: 381 LQI---HTKNMKLADDVDLEQVANET 403
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 8/206 (3%)
Query: 456 DFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARV 514
D +I E+V L++P+ F+ +G + PRG+L+ G GTGKT +A A+A E
Sbjct: 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264
Query: 515 PVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQD 574
+ E+ + L G+S SN+R+ F+ A AP IIF+++ D A R + T +
Sbjct: 265 FFFLINGPEIMSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK---THGEV 320
Query: 575 HESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKI 634
++QLL +DG +++ V++MA T ID AL+R GR DR ++ P + R +I
Sbjct: 321 ERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 380
Query: 635 LRIAAQETMDEELIDLVDWRKVAEKT 660
L+I T + +L D VD +VA +T
Sbjct: 381 LQI---HTKNMKLADDVDLEQVANET 403
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 8/206 (3%)
Query: 456 DFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARV 514
D +I E+V L++P+ F+ +G + PRG+L+ G GTGKT +A A+A E
Sbjct: 205 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264
Query: 515 PVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQD 574
+ E+ + L G+S SN+R+ F+ A AP IIF+++ D A R + T +
Sbjct: 265 FFFLINGPEIMSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK---THGEV 320
Query: 575 HESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKI 634
++QLL +DG +++ V++MA T ID AL+R GR DR ++ P + R +I
Sbjct: 321 ERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 380
Query: 635 LRIAAQETMDEELIDLVDWRKVAEKT 660
L+I T + +L D VD +VA +T
Sbjct: 381 LQI---HTKNMKLADDVDLEQVANET 403
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 98/208 (47%), Gaps = 5/208 (2%)
Query: 434 IDPIKNAFERMKRVKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVL 492
IDP + M + P + D + E++ EVV L +P F +G P+G+L
Sbjct: 191 IDP---SVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGIL 247
Query: 493 IVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVII 552
+ G GTGKT A A+A + V EL +VG+ A VRELF+ AR II
Sbjct: 248 LYGPPGTGKTLCARAVANRTDATFIRVIGSEL-VQKYVGEGARMVRELFEMARTKKACII 306
Query: 553 FVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQ 612
F ++ D G R + + + +L+ +LDGF+ + + +M T +D AL
Sbjct: 307 FFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALL 366
Query: 613 RPGRMDRIFNLQKPTQSEREKILRIAAQ 640
RPGR+DR P R I RI ++
Sbjct: 367 RPGRIDRKVEFSLPDLEGRANIFRIHSK 394
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 96/173 (55%), Gaps = 2/173 (1%)
Query: 466 EINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524
E+ EV+ L+NP FQ +G + P+GVL+ G GTGKT LA A+AA + A +
Sbjct: 192 ELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGI 251
Query: 525 EAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLV 584
++G+SA +RE+F A++ P IIF+++ D G R + ++ + + +LL
Sbjct: 252 -VDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLT 310
Query: 585 ELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRI 637
++DGF+ ++ T +D AL RPGR+DR + P ++ R +I +I
Sbjct: 311 QMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKI 363
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 95/178 (53%), Gaps = 4/178 (2%)
Query: 444 MKRVKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKT 502
M + P + D ++ ++EI E V L ++++G PRGVL+ G GTGKT
Sbjct: 161 MGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKT 220
Query: 503 SLALAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAG 562
L A+A + + V E ++G+ VR++F+ AR+ AP IIF+++ D A
Sbjct: 221 MLVKAVANSTKAAFIRVNGSEF-VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIAT 279
Query: 563 VRGQFIHTKQQDHESFINQLLVELDGFEKQDGV-VLMATTRNIKQIDEALQRPGRMDR 619
R ++ + + +LL ++DGF++ V V+MAT R +D AL RPGR+DR
Sbjct: 280 KRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNR-ADTLDPALLRPGRLDR 336
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 126/269 (46%), Gaps = 22/269 (8%)
Query: 449 NPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAP-RGVLIVGERGTGKTSLAL 506
PP+ +D A VE + I E+V + + P F G R P +G+L+ G GTGKT +
Sbjct: 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIF--TGLRGPPKGILLFGPPGTGKTLIGK 135
Query: 507 AIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQ 566
IA+++ ++ A L + WVG+ VR LF AR P +IF+++ D RG
Sbjct: 136 CIASQSGATFFSISASSLTSK-WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD 194
Query: 567 FIHTKQQDHESFINQLLVELDG--FEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQ 624
H + + LV+LDG +D ++++ T ++IDEA +R R+ + +
Sbjct: 195 GEH---ESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIP 249
Query: 625 KPTQSEREKIL-------RIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPV-ALE 676
P S R++I+ + E E+++ D A+ T L R E L P+ +L+
Sbjct: 250 LPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCR--EASLGPIRSLQ 307
Query: 677 GSAFRSKFLDTDELMSYCGWFATFSGVVP 705
+ + D ++Y + F V P
Sbjct: 308 TADIATITPDQVRPIAYIDFENAFRTVRP 336
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 104/213 (48%), Gaps = 16/213 (7%)
Query: 433 GIDPIKNAFERMKRVKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAP-RG 490
GIDP + P + +D A +E +E + E V ++ P F+ G R P G
Sbjct: 1 GIDPFTAILS-----EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSG 53
Query: 491 VLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPV 550
+L+ G GTGK+ LA A+A EA +V + +L W+G+S V++LF AR+ P
Sbjct: 54 ILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL-VSKWMGESEKLVKQLFAMARENKPS 112
Query: 551 IIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIK-QIDE 609
IIF++ D G RG+ + + +LLV+++G VL+ NI Q+D
Sbjct: 113 IIFIDQVDALTGTRGE---GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 169
Query: 610 ALQRPGRMDRIFNLQKPTQSEREKILRIAAQET 642
A++R R +R + P + R + I +T
Sbjct: 170 AIRR--RFERRIYIPLPDLAARTTMFEINVGDT 200
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 109/226 (48%), Gaps = 24/226 (10%)
Query: 433 GIDPIK---NAFERMKRVKN----------PPIPLKDFASVESMREEINEVVAF-LQNPS 478
GIDP N E K+++ P + +D A +E +E + E V ++ P
Sbjct: 1 GIDPFTGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPH 60
Query: 479 AFQEMGARAP-RGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNV 537
F+ G R P G+L+ G GTGK+ LA A+A EA +V + +L W+G+S V
Sbjct: 61 LFK--GNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL-VSKWMGESEKLV 117
Query: 538 RELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVL 597
++LF AR+ P IIF++ D G RG+ + + +LLV+++G VL
Sbjct: 118 KQLFAMARENKPSIIFIDQVDALTGTRGE---GESEASRRIKTELLVQMNGVGNDSQGVL 174
Query: 598 MATTRNIK-QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQET 642
+ NI Q+D A++R R +R + P + R + I +T
Sbjct: 175 VLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDT 218
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 100/196 (51%), Gaps = 11/196 (5%)
Query: 450 PPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAP-RGVLIVGERGTGKTSLALA 507
P + +D A +E +E + E V ++ P F+ G R P G+L+ G GTGK+ LA A
Sbjct: 22 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLYGPPGTGKSYLAKA 79
Query: 508 IAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQF 567
+A EA +V + +L W+G+S V++LF AR+ P IIF+++ D G RG+
Sbjct: 80 VATEANSTFFSVSSSDL-VSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGE- 137
Query: 568 IHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIK-QIDEALQRPGRMDRIFNLQKP 626
+ + +LLV+++G VL+ NI Q+D A++R R +R + P
Sbjct: 138 --GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLP 193
Query: 627 TQSEREKILRIAAQET 642
+ R + I +T
Sbjct: 194 DLAARTTMFEINVGDT 209
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 99/196 (50%), Gaps = 11/196 (5%)
Query: 450 PPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAP-RGVLIVGERGTGKTSLALA 507
P + +D A +E +E + E V ++ P F+ G R P G+L+ G GTGK+ LA A
Sbjct: 46 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLYGPPGTGKSYLAKA 103
Query: 508 IAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQF 567
+A EA +V + +L W+G+S V++LF AR+ P IIF++ D G RG+
Sbjct: 104 VATEANSTFFSVSSSDL-VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE- 161
Query: 568 IHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIK-QIDEALQRPGRMDRIFNLQKP 626
+ + +LLV+++G VL+ NI Q+D A++R R +R + P
Sbjct: 162 --GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLP 217
Query: 627 TQSEREKILRIAAQET 642
+ R + I +T
Sbjct: 218 DLAARTTMFEINVGDT 233
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 107/218 (49%), Gaps = 14/218 (6%)
Query: 447 VKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAP-RGVLIVGERGTGKTSL 504
++ P + D A +E +E + E V ++ P F G R P RG+L+ G GTGK+ L
Sbjct: 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKSYL 61
Query: 505 ALAIAAEARVPVV-NVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGV 563
A A+A EA ++ + +L W+G+S V+ LFQ AR+ P IIF+++ D G
Sbjct: 62 AKAVATEANNSTFFSISSSDL-VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGS 120
Query: 564 RGQFIHTKQQDHESFINQLLVELDGFE-KQDGVVLMATTRNIKQIDEALQRPGRMDRIFN 622
R + + + + LV++ G DG++++ T +D A++R R ++
Sbjct: 121 RSE---NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIY 175
Query: 623 LQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKT 660
+ P R + ++ T + + D+R++ KT
Sbjct: 176 IPLPEPHARAAMFKLHLGTTQNS--LTEADFRELGRKT 211
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 111/228 (48%), Gaps = 14/228 (6%)
Query: 437 IKNAFERMKRVKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAP-RGVLIV 494
++N + ++ P + D A +E +E + E V ++ P F G R P RG+L+
Sbjct: 116 LQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLF--TGKRTPWRGILLF 173
Query: 495 GERGTGKTSLALAIAAEARVPVV-NVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIF 553
G GTGK+ LA A+A EA ++ + +L W+G+S V+ LFQ AR+ P IIF
Sbjct: 174 GPPGTGKSYLAKAVATEANNSTFFSISSSDL-VSKWLGESEKLVKNLFQLARENKPSIIF 232
Query: 554 VEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE-KQDGVVLMATTRNIKQIDEALQ 612
+++ D G R + + + + LV++ G DG++++ T +D A++
Sbjct: 233 IDEIDSLCGSRSE---NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIR 289
Query: 613 RPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKT 660
R R ++ + P R + R+ T + + D++++ KT
Sbjct: 290 R--RFEKRIYIPLPEAHARAAMFRLHLGSTQNS--LTEADFQELGRKT 333
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 12/163 (7%)
Query: 456 DFASVESMREEINEVVAFLQNPSAFQEM--GARAP-RGVLIVGERGTGKTSLALAIAAEA 512
D A + ++ + E+V PS E+ G RAP RG+L+ G G GKT LA A+AAE+
Sbjct: 116 DIAGQDLAKQALQEIVIL---PSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES 172
Query: 513 RVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQ 572
N+ A L + +VG+ VR LF AR+L P IIF++ D R + H
Sbjct: 173 NATFFNISAASLTSK-YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDAS 231
Query: 573 QDHESFINQLLVELDGFEK--QDGVVLMATTRNIKQIDEALQR 613
+ + L+E DG + D V++M T +++DEA+ R
Sbjct: 232 R---RLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR 271
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 89/186 (47%), Gaps = 15/186 (8%)
Query: 456 DFASVESMREEINEVVAFLQNPSAFQEM--GARAP-RGVLIVGERGTGKTSLALAIAAEA 512
D A + ++ + E+V PS E+ G RAP +G+L+ G G GKT LA A+A E
Sbjct: 22 DIAGQDVAKQALQEMVIL---PSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC 78
Query: 513 RVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQ 572
+N+ A L + +VG VR LF AR + P IIF+++ D R H
Sbjct: 79 SATFLNISAASLTSK-YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEH--- 134
Query: 573 QDHESFINQLLVELDGFEKQ---DGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQS 629
+ + LVE DG D +V++A T +++DEA R R + + P +
Sbjct: 135 EASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQ 192
Query: 630 EREKIL 635
RE +L
Sbjct: 193 TRELLL 198
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSA-SNVRELFQTARD 546
P+ +L++G G GKT +A +A A P + VEA + +VG+ S +R+L +A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGG 109
Query: 547 LAPV-----IIFVEDFD 558
I+F+++ D
Sbjct: 110 AIDAVEQNGIVFIDEID 126
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSA-SNVRELFQTARD 546
P+ +L++G G GKT +A +A A P + VEA + +VG+ S +R+L +A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMK 109
Query: 547 L 547
L
Sbjct: 110 L 110
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSA-SNVRELFQTA 544
P+ +L++G G GKT +A +A A P + VEA + +VG+ S +R+L A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 107
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSA-SNVRELFQTA 544
P+ +L++G G GKT +A +A A P + VEA + +VG+ S +R+L A
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 106
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSA-SNVRELFQTA 544
P+ +L++G G GKT +A +A A P + VEA + +VG+ S +R+L A
Sbjct: 56 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 113
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 9/57 (15%)
Query: 461 ESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAE--ARVP 515
E+ RE +V +++ ++M RA VL+ G GTGKT+LALAIA E ++VP
Sbjct: 43 ENAREACGVIVELIKS----KKMAGRA---VLLAGPPGTGKTALALAIAQELGSKVP 92
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSA-SNVRELFQTARD 546
P+ +L +G G GKT +A +A A P + VEA + +VG+ S +R+L +A
Sbjct: 50 PKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAXK 109
Query: 547 L 547
L
Sbjct: 110 L 110
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 491 VLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARD---- 546
+L++G G+GKT +A +A +P+ +A L +VG+ N+ A D
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 134
Query: 547 -LAPVIIFVEDFD 558
I+F+++ D
Sbjct: 135 KAQKGIVFIDEID 147
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Query: 461 ESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAE--ARVP 515
E+ RE +V +++ A R VL+ G GTGKT+LALAIA E ++VP
Sbjct: 57 ENAREACGVIVELIKSKKX-------AGRAVLLAGPPGTGKTALALAIAQELGSKVP 106
>pdb|2ZE5|A Chain A, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase
pdb|2ZE6|A Chain A, Crystal Structure Of Adenosine
Phosphate-isopentenyltransferase Complexed With
Substrate Analog, Dmaspp
pdb|2ZE7|A Chain A, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With Zinc Ion
And Substrate Analog, Dmaspp
pdb|2ZE8|A Chain A, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
pdb|2ZE8|B Chain B, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
pdb|2ZE8|C Chain C, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
pdb|2ZE8|D Chain D, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
Length = 253
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 492 LIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVI 551
LI G +GKT +A+ IA E PVV ++ + + G EL T R
Sbjct: 5 LIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRR------ 58
Query: 552 IFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVL 597
I+++ L G+ D ES +L+ E+D + ++G++L
Sbjct: 59 IYLDSRPLTEGI---------LDAESAHRRLIFEVDWRKSEEGLIL 95
>pdb|2RHM|A Chain A, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
pdb|2RHM|B Chain B, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
pdb|2RHM|C Chain C, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
pdb|2RHM|D Chain D, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
Length = 193
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 484 GARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEA 521
G + P +++ G TGKT+L+ A+A R+P+++ +A
Sbjct: 1 GXQTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDA 38
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 45/207 (21%), Positives = 88/207 (42%), Gaps = 36/207 (17%)
Query: 455 KDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVL---IVGERGTGKTSLALAIAA- 510
++ ++ +++ I E A L A Q++G L G GTGKT++AL +A
Sbjct: 31 RELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGL 90
Query: 511 ------EARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVR 564
+ +V+V +L G ++G +A +E+ + R + V+ E + L+
Sbjct: 91 LHRLGYVRKGHLVSVTRDDL-VGQYIGHTAPKTKEVLK--RAMGGVLFIDEAYYLYR--- 144
Query: 565 GQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQ 624
++D+ ++L+++ + D VV++A G DR+ N
Sbjct: 145 ----PDNERDYGQEAIEILLQVMENNRDDLVVILA---------------GYADRMENFF 185
Query: 625 KPTQSEREKIL-RIAAQETMDEELIDL 650
+ R +I I + DEEL ++
Sbjct: 186 QSNPGFRSRIAHHIEFPDYSDEELFEI 212
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 488 PRGV--LIVGERGTGKTSLALAIAAE 511
P+G+ LI G GTGKTS+A IAAE
Sbjct: 8 PKGINILITGTPGTGKTSMAEMIAAE 33
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 491 VLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNV 537
+L++G G+GKT LA +A VP +A L +VG+ N+
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENI 100
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 491 VLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNV 537
+L++G G+GKT LA +A VP +A L +VG+ N+
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENI 100
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 484 GARAPRGVLIVGERGTGKTSLALAIA 509
G A R VLI G+ GTGKT++A+ +A
Sbjct: 66 GKIAGRAVLIAGQPGTGKTAIAMGMA 91
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 455 KDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVL---IVGERGTGKTSLALAIAA- 510
++ ++ +++ I E A L A Q++G L G GTGKT++AL +A
Sbjct: 24 RELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGL 83
Query: 511 ------EARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLF 560
+ +V+V +L G ++G +A +E+ + R + V+ E + L+
Sbjct: 84 LHRLGYVRKGHLVSVTRDDL-VGQYIGHTAPKTKEVLK--RAMGGVLFIDEAYYLY 136
>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat
Length = 332
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 15/92 (16%)
Query: 168 DRVVSKTWYNE-DKSRWEMDPVAVPYAVSNKIVESARIRHDWGAMYLSLKGDDKEFYVDI 226
DR+V K +Y E D SR + +++++ + HD G ++ LK ++ +Y
Sbjct: 105 DRIVEKGFYTERDASR-----------LIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLD 153
Query: 227 KEFEVLFEDFGGF---DELYMKMLACGIPTAV 255
++ +++ DFG D + ACG P V
Sbjct: 154 EDSKIMISDFGLSKMEDPGSVLSTACGTPGYV 185
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 45/207 (21%), Positives = 85/207 (41%), Gaps = 36/207 (17%)
Query: 455 KDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVL---IVGERGTGKTSLALAIAA- 510
++ ++ +++ I E A L A Q++G L G GTGKT++AL A
Sbjct: 31 RELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHXSFTGNPGTGKTTVALKXAGL 90
Query: 511 ------EARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVR 564
+ +V+V +L G ++G +A +E+ + R V+ E + L+
Sbjct: 91 LHRLGYVRKGHLVSVTRDDL-VGQYIGHTAPKTKEVLK--RAXGGVLFIDEAYYLYRP-- 145
Query: 565 GQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQ 624
++D+ ++L+++ + D VV++A G DR N
Sbjct: 146 -----DNERDYGQEAIEILLQVXENNRDDLVVILA---------------GYADRXENFF 185
Query: 625 KPTQSEREKIL-RIAAQETMDEELIDL 650
+ R +I I + DEEL ++
Sbjct: 186 QSNPGFRSRIAHHIEFPDYSDEELFEI 212
>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-293 In Complex With Atp
Length = 293
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 15/92 (16%)
Query: 168 DRVVSKTWYNE-DKSRWEMDPVAVPYAVSNKIVESARIRHDWGAMYLSLKGDDKEFYVDI 226
DR+V K +Y E D SR + +++++ + HD G ++ LK ++ +Y
Sbjct: 105 DRIVEKGFYTERDASR-----------LIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLD 153
Query: 227 KEFEVLFEDFGGF---DELYMKMLACGIPTAV 255
++ +++ DFG D + ACG P V
Sbjct: 154 EDSKIMISDFGLSKMEDPGSVLSTACGTPGYV 185
>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FG9|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FGB|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I Apo Form
Length = 320
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 15/92 (16%)
Query: 168 DRVVSKTWYNE-DKSRWEMDPVAVPYAVSNKIVESARIRHDWGAMYLSLKGDDKEFYVDI 226
DR+V K +Y E D SR + +++++ + HD G ++ LK ++ +Y
Sbjct: 105 DRIVEKGFYTERDASR-----------LIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLD 153
Query: 227 KEFEVLFEDFGGF---DELYMKMLACGIPTAV 255
++ +++ DFG D + ACG P V
Sbjct: 154 EDSKIMISDFGLSKMEDPGSVLSTACGTPGYV 185
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 17/149 (11%)
Query: 439 NAFERMKRVKNPPI-PLKDFASVESMREEINEVVAF-LQNPSAFQE-----MGARAPRGV 491
N E ++R N P+ +K F + + + V A PS QE M A P+ +
Sbjct: 8 NQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNL 67
Query: 492 LIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNVREL-FQTARDLAPV 550
+ + GTGKT+ A +A ++V N Q L S EL QT + + +
Sbjct: 68 IAQSQSGTGKTA-AFVLAMLSQVEPANKYPQCL--------CLSPTYELALQTGKVIEQM 118
Query: 551 IIFVEDFDLFAGVRGQFIHTKQQDHESFI 579
F + L VRG + Q+ E +
Sbjct: 119 GKFYPELKLAYAVRGNKLERGQKISEQIV 147
>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
pdb|4FG8|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
Length = 315
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 15/92 (16%)
Query: 168 DRVVSKTWYNE-DKSRWEMDPVAVPYAVSNKIVESARIRHDWGAMYLSLKGDDKEFYVDI 226
DR+V K +Y E D SR + +++++ + HD G ++ LK ++ +Y
Sbjct: 105 DRIVEKGFYTERDASR-----------LIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLD 153
Query: 227 KEFEVLFEDFGGF---DELYMKMLACGIPTAV 255
++ +++ DFG D + ACG P V
Sbjct: 154 EDSKIMISDFGLSKMEDPGSVLSTACGTPGYV 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,731,476
Number of Sequences: 62578
Number of extensions: 1150957
Number of successful extensions: 3316
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3210
Number of HSP's gapped (non-prelim): 77
length of query: 979
length of database: 14,973,337
effective HSP length: 108
effective length of query: 871
effective length of database: 8,214,913
effective search space: 7155189223
effective search space used: 7155189223
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)